LOCUS       DATIHC010000001         2932 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4672, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000001 DATIHC010000000
VERSION     DATIHC010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2932)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2932
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4672"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..867
                     /locus_tag="VLF16_00005"
     CDS             <1..867
                     /locus_tag="VLF16_00005"
                     /EC_number="3.5.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003246302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016990 - arginine deiminase activity
                     [Evidence IEA];
                     GO_process: GO:0006527 - arginine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase"
                     /protein_id="HSX69286.1"
                     /translation="DLVRHKDSDAAKMFNAYLGESSFIFPPLPNTQFTRDTTCWIYGG
                     VTLNPMYWPARRQETLLASAIYKFHPDFVNEEFEIWYGDPDKDHGAATLEGGDVMPIG
                     NGTVLIGMGERSSHQAIGQVAQALFAKGAAEKVVVAGLGRSRAAMHLDTVFSFCDRDL
                     VTVFPEVANSIVPFVLRPDESRPGGIDVRRENKSFIEVVAESLGLPKLRVVETGGDAY
                     EAEREQWDDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGHC
                     MTCPIIRDPIDY"
     gene            933..1943
                     /locus_tag="VLF16_00010"
     CDS             933..1943
                     /locus_tag="VLF16_00010"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006591 - ornithine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HSX69287.1"
                     /translation="MAFNMHNRNLLSLMHHSTRELRYLLDLSRDLKRAKYTGTEQPHL
                     LRKNIALIFEKTSTRTRCAFEVAAYDQGANVTYIDPGSSQIGHKESMKDTARVLGRMY
                     DAIEYRGFKQEIVEDLAKYAGVPVFNGLTDEYHPTQMLADVLTMREHSDKPLHDISYA
                     YLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPTDEHVAACKQFAEESGARITLTED
                     AREAVKGVDFVHTDVWVSMGEPVEAWGERIQQLLPYQVNMDLMKAVGNPRVKFMHCLP
                     AFHNSETKVGKQIAEQYPDLKNGIEVTDDVFESPYCIAFEQAENRMHTIKAILVSTLA
                     DV"
     gene            2057..>2932
                     /gene="arcC"
                     /locus_tag="VLF16_00015"
     CDS             2057..>2932
                     /gene="arcC"
                     /locus_tag="VLF16_00015"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008804 - carbamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HSX69288.1"
                     /translation="MRLVIALGGNALLRRGEAMTADNQRENVRIACEQIAKVAAGNEL
                     VIAHGNGPQVGLLALQGNAYDPANPYPLDVLGAETEGMIGYMIEQELGNLLPFEVPFA
                     TILTQVEVDSGDPAFKTPTKPIGPVYSKEDAERLAAEKGWSIAPDGDKFRRVVASPRP
                     QRIFEIRPVKWLLEKGSVVICAGGGGIPTLYDNGKLKGVEAVIDKDLCSALLAEQLDS
                     DLLVIATDVDAAYVDWGKPTQQAIAQAHPDELERLGFAAGSMGPKVQAACEFARNTGK
                     VAVVGSLANIEAIVQG"
BASE COUNT          558 a         1050 c          922 g          402 t
ORIGIN      
        1 gacctggtgc ggcacaagga ttccgacgcg gcgaagatgt tcaacgccta cctcggcgag
       61 tccagcttca tcttcccgcc gctgcccaac acccagttca cccgcgacac cacctgctgg
      121 atctatggcg gcgtcaccct caaccccatg tactggccgg cgcgccgtca ggaaaccctg
      181 ctggccagcg ccatctacaa attccatccg gacttcgtca acgaggagtt cgagatctgg
      241 tacggcgacc ccgacaagga ccacggcgcg gccacgctgg agggcggcga cgtgatgccc
      301 atcggcaacg gcaccgtgct catcggcatg ggcgagcgct cctcgcatca ggccatcggc
      361 caggtcgccc aggccctgtt cgccaagggc gcggcggaga aggtggtggt cgccggcctc
      421 ggcagatcgc gcgccgccat gcacctggac accgtgttca gcttctgcga ccgcgacctg
      481 gtgaccgtct tccccgaggt ggccaactcc atcgtgccgt tcgtcctgcg tccggacgag
      541 agccgccccg gcggcatcga cgtgcgccgc gagaacaagt ccttcatcga ggtggtcgcc
      601 gagtccctcg gcctgcccaa gctgcgcgtg gtggaaaccg gcggcgacgc ctacgaggcc
      661 gagcgcgagc agtgggacga cggcaacaac gtggtctgcc tggagcccgg cgtggtggtc
      721 ggctacgacc gcaacaccta caccaacacc ctgctgcgca aggccggcgt cgaggtcatc
      781 accatcagcg ccagcgaact gggccgcggc cgcggcggtg gccactgcat gacttgcccg
      841 atcatccgcg accccatcga ttactgaccg agccagcccg ggcggccatt cgccgcccag
      901 gcgtttccat ctacccacga ggagaacgaa tcatggcctt caacatgcac aaccgtaacc
      961 tgctcagcct gatgcaccac agcacccgcg agctgcgcta cctgctggat ctgtcccgcg
     1021 acctcaagcg cgccaagtac accggcaccg agcagccgca cctgctgcgc aagaacatcg
     1081 cgctgatctt cgagaagact tctacccgca cccgctgcgc cttcgaggtg gccgcctacg
     1141 accagggcgc caacgtcacc tacatcgacc cgggctcctc gcagatcggc cacaaggagt
     1201 cgatgaagga caccgcccgc gtgctcggcc gcatgtacga cgccatcgaa taccgcggct
     1261 tcaagcagga gatcgtcgag gacctggcca agtacgccgg cgtgccggtg ttcaacggcc
     1321 tgaccgacga ataccacccg acccagatgc tcgccgacgt gctgaccatg cgcgagcaca
     1381 gcgacaagcc gttgcacgac atcagctacg cctacctggg cgacgcccgc aacaacatgg
     1441 gcaactcgct gctgctgatc ggcgccaagc tcggtatgga cgtacgcatc gccgcaccca
     1501 aggccctgtg gccgaccgac gagcacgtcg ccgcgtgcaa gcagttcgcc gaggagagcg
     1561 gcgcgcgcat caccctcacc gaggacgcca gggaagcggt caagggcgtc gacttcgtcc
     1621 acaccgacgt ctgggtgtcc atgggcgagc cggtcgaggc ctggggcgag cgcatccagc
     1681 aactgctgcc gtaccaggtg aacatggacc tgatgaaggc cgtcggcaat ccgcgggtca
     1741 agttcatgca ctgcctgccc gccttccaca acagcgagac caaggtcggc aagcagatcg
     1801 ccgagcagta cccggacctg aagaacggca tcgaggtcac cgacgacgtg ttcgagtcgc
     1861 cgtactgcat cgccttcgag caggcggaga accgcatgca cacgatcaag gcaatcctcg
     1921 tctcgaccct cgccgacgtc tgacccggcc acctgcacag atccctctct ccgggagggc
     1981 ctgggcgggg gcgttgcggc aacacggcgc agccgggagg cacgccctcg cctcacaacg
     2041 aaccaggaga acaaccatgc gactagtcat cgccctgggc ggcaacgccc tgctgcggcg
     2101 tggcgaggcc atgaccgcgg acaaccagcg cgagaacgta cgcatcgcct gcgagcagat
     2161 cgccaaggtc gcggcgggca acgaactggt gatcgcccac ggcaatggcc cgcaggtcgg
     2221 cctgctggcc ctgcagggca acgcctacga ccccgccaac ccctacccgc tggacgtgct
     2281 cggcgccgag accgaaggca tgatcggcta catgatcgaa caggagctgg gcaacctgct
     2341 gccgttcgag gtgccgttcg ccaccatcct cacccaggtc gaggtggaca gcggcgaccc
     2401 cgccttcaag accccgacca agccgatcgg cccggtgtac agcaaggaag acgccgagcg
     2461 cctggccgcc gaaaagggct ggagtatcgc cccggacggc gacaagttcc gccgcgtggt
     2521 cgccagccca cggccgcagc gcatcttcga gattcgcccg gtgaagtggc tgctggagaa
     2581 gggcagcgtg gtgatctgcg cgggcggcgg cggcatcccg accctgtacg acaacggcaa
     2641 gctcaagggc gtggaggcgg tgatcgacaa ggacctgtgc tcggcgctgc tggccgagca
     2701 gctggacagc gacctgctgg tgatcgccac cgacgtggac gccgcctatg tcgactgggg
     2761 caaaccgacc cagcaggcca tcgcccaggc ccacccggac gagctggagc gcctcggctt
     2821 cgccgccggc tccatggggc ccaaggtcca ggccgcctgc gagttcgcgc gcaacaccgg
     2881 caaggtcgcg gtggtcggct cgctggccaa catcgaggcc atcgtccagg gc
//
LOCUS       DATIHC010000002         3108 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28053, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000002 DATIHC010000000
VERSION     DATIHC010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3108
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28053"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..706
                     /gene="aroC"
                     /locus_tag="VLF16_00020"
     CDS             <1..706
                     /gene="aroC"
                     /locus_tag="VLF16_00020"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HSX69289.1"
                     /translation="ETAMRVAAGAVAKKVLAGLGIQVRGYMSQLGPIEIAFKTWDSVE
                     QNAFFSPDPDKVPELEAYMDQLRRDQDSVGAKITVVAEGVMPGLGEPIFDRLDADLAH
                     ALMSINAVKGVEIGAGFACVAQRGTEHRDELTPEGFLSNNAGGILGGISSGQPIVAHL
                     ALKPTSSITTPGRSIDVDGNPVDVITKGRHDPCVGIRATPIAEAMMAIVLLDHLLRHR
                     AQNADVRVSTPVLPQL"
     gene            703..1857
                     /locus_tag="VLF16_00025"
     CDS             703..1857
                     /locus_tag="VLF16_00025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015276748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSX69290.1"
                     /translation="MTGQPLPYWRLSAFYFFYFAMLGATAPFLPLYFQHLGFSPARIG
                     ELVAIPMLMRCLAPNLWGWLGDRSGQRLRIVRFGALCTLLSFALIFVDQSYAWLALVM
                     ALHAFFWHAVLPQFEVITLAHLQEQTARYSQVRLWGAIGFIVAVIGLGELFERFSPAL
                     FPAMVVLILAGILVGTLWVPNAVPQARAGQGGEGGFLAQLLRPGVPAFFLCVCLMQLS
                     HGPYYTFLTLHLEQLGYERGFIGQMWALGVVAEIVLFLFMARILTRFSVRWVLAASFA
                     LASLRWLLLGNLADHLGVLLFAQLLHAATFGSFHAAAIHFVQRSFGPNQQGQGQALYA
                     ALAGTGGALGALYAGYSWVGLGPSLTFAIASLVALAAAFIIAIRLREERA"
     gene            1854..2465
                     /locus_tag="VLF16_00030"
     CDS             1854..2465
                     /locus_tag="VLF16_00030"
                     /EC_number="4.2.1.109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylthioribulose 1-phosphate dehydratase"
                     /protein_id="HSX69291.1"
                     /translation="MNREQLTRQIIEAGRFLYGRGWSPATSSNYSARLAADQALLTVS
                     GKHKGELGEGDVLATDLDGNSLEPGKKPSAETLLHTQLYRWKPEIGAVLHTHSVNATV
                     LSRMTLADSLVFADYELQKAFAGISTHESQVLVPIFDNDQDIARLASRVQPWLDEHAD
                     CVGYLIRGHGLYTWGATMADCLRQVEAFEFLFECELKVRALQR"
     gene            2530..3075
                     /locus_tag="VLF16_00035"
     CDS             2530..3075
                     /locus_tag="VLF16_00035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acireductone dioxygenase"
                     /protein_id="HSX69292.1"
                     /translation="MSSLTVYHQSSPDVPNKVLTHAEDIAATLAAVGVHFERWQASAP
                     IQPGAGQDEVIAAYRPQIDKLMSERGYVTVDVVSLNKDHPQKDELRAKFLDEHRHGED
                     EVRFFVAGRGLFTLHIDDYVYAVLCEKNDLISVPAGTRHWFDMGEFPHFVAIRLFNNP
                     EGWVANFTGDEIAGRFPRLED"
BASE COUNT          466 a         1109 c         1000 g          533 t
ORIGIN      
        1 cgagaccgcc atgcgcgtcg ccgccggcgc cgtggcgaag aaggtgctgg ccggcctggg
       61 catccaggtg cgtggctaca tgagccagct cggcccgatc gagattgcgt tcaagacctg
      121 ggacagcgtt gagcagaacg ccttcttcag ccccgacccg gacaaggtgc cggagcttga
      181 ggcctacatg gaccagctgc gccgcgacca ggattccgtg ggcgccaaga tcaccgtggt
      241 cgccgaaggc gtgatgcccg gcctgggcga accgattttc gaccgcctgg acgccgacct
      301 ggcccacgcg ctgatgagca tcaacgcggt caagggcgtg gaaatcggcg ccggtttcgc
      361 ctgcgtggcc cagcgcggca ccgaacaccg cgacgagctg acgccggaag ggttcctgtc
      421 caacaacgcc ggcggcatcc tcggcggcat ttccagcggc cagccgatcg tcgctcacct
      481 ggcgctgaag ccgacctcca gcatcaccac tccgggccgc tccatcgatg tcgacggcaa
      541 tccggtagat gtgatcacca agggtcgcca tgacccctgc gtgggcatcc gcgccacgcc
      601 gatcgccgag gcgatgatgg ccatcgtgct gctcgaccac ctgctgcgcc accgcgcaca
      661 gaacgccgac gtgcgggtca gcaccccggt actgccgcag ctgtgaccgg ccagccgctg
      721 ccgtactggc ggctgtccgc gttctacttc ttctacttcg ccatgctggg cgccaccgcg
      781 cccttcctgc cgctgtattt ccagcacctg ggcttctcgc cggcgcgcat cggcgagctg
      841 gtggccattc ccatgctgat gcgctgcctg gcgcccaacc tgtggggctg gctgggcgat
      901 cgcagcggcc agcgcctgcg catcgtgcgc ttcggcgcgc tgtgcacgct gctcagcttc
      961 gccctgatct tcgtcgacca gagctacgcc tggctggccc tggtgatggc gctgcatgcg
     1021 ttcttctggc acgcggtgct gccgcagttc gaggtgatca ccctggccca cctgcaggag
     1081 cagaccgcgc gctactcgca ggtccgcctg tggggcgcga tcggcttcat cgtcgcggtg
     1141 atcggcctgg gcgagctctt cgagcgcttc agcccggcgc tgtttccggc catggtggtg
     1201 ctgatcctcg ccggcatcct ggtcggcacc ctgtgggtgc ccaacgcggt gccgcaggcg
     1261 cgggccgggc agggcggcga gggcggtttc ctcgcccagc tgctgcgtcc gggcgtgccg
     1321 gcgttctttc tctgcgtctg cctgatgcag ctgtcgcacg ggccgtacta caccttcctc
     1381 actctgcacc tggaacagct cggctacgag cgcggcttca tcggccagat gtgggcgctg
     1441 ggcgtggtgg cggagatcgt gctgttcctg ttcatggcac gcatcctcac gcgcttctcg
     1501 gtgcgctggg tgctggcggc cagcttcgcg ctggcatcgc tgcgctggct gctgctgggc
     1561 aacctggccg atcacctggg cgtgttgctg ttcgcccagc tgctgcacgc cgccaccttc
     1621 ggcagcttcc acgccgccgc cattcatttc gtccagcgca gcttcggccc caatcagcag
     1681 ggccagggtc aggcgctgta tgcggcactg gccggcaccg ggggcgccct cggcgcgctg
     1741 tacgccggct acagctgggt cggactcggc ccgagcctga ccttcgccat agccagcttg
     1801 gtcgccctgg ccgcggcctt tatcattgcc atccgtttgc gcgaggagcg ggcatgaacc
     1861 gtgaacaact gacccggcag atcatcgagg ccgggcgctt cctgtacggc cgcggctggt
     1921 cgccggccac cagcagcaac tactcggcgc gcctggcggc cgaccaggcg ctgctgaccg
     1981 tctccggcaa gcacaagggc gagctgggcg agggcgacgt gctggccacc gacctcgacg
     2041 gcaacagcct ggagccgggc aagaagccct cggccgagac cctgctgcac acccagctgt
     2101 accgctggaa gccggagatc ggcgccgtgc tgcacaccca ctcggtcaac gccaccgtgc
     2161 tgtcgcgcat gaccctggcc gattccctgg tgttcgccga ttacgagttg cagaaggcct
     2221 tcgccgggat ttccacccac gagagccagg tgctggtgcc gatcttcgac aacgaccagg
     2281 acatcgcccg cctggcctcc cgggtacaac cctggcttga cgagcatgcc gattgcgtcg
     2341 gctacctgat tcgcggccat ggcctgtaca cctggggcgc gaccatggcc gactgtctgc
     2401 gccaggtcga ggccttcgaa ttcctcttcg agtgcgagct gaaggtgcgc gccctgcagc
     2461 gctgacgcca tcctccggtg cgcacgaacg caccgacaga acatgagccc gatgggccgg
     2521 agaccgacca tgagcagcct gaccgtctac caccagtcca gccccgacgt gccgaacaag
     2581 gtgttgaccc acgccgagga catcgccgcc acgctggccg ccgtcggcgt gcacttcgag
     2641 cgctggcagg ccagtgcacc gatccagccc ggcgccggcc aggacgaggt gatcgccgcc
     2701 taccgcccgc agatcgacaa gctgatgagc gagcgcggct acgtcaccgt cgacgtggtc
     2761 agcctgaaca aggaccaccc gcagaaggac gaactgcgcg ccaagttcct cgacgagcac
     2821 cgccatggcg aggacgaggt gcgcttcttc gtcgccggtc gcggcctgtt caccctgcat
     2881 atcgacgact acgtctacgc cgtgctgtgc gagaagaacg acctgatctc ggtgccggcc
     2941 ggtacccgcc actggttcga catgggcgaa ttcccgcact tcgtggcgat ccgcctgttc
     3001 aacaaccccg agggttgggt cgccaacttc accggcgacg agatcgctgg ccgctttccg
     3061 cgtctggaag actgactggt taaccctctc cccagccctc tcccatga
//
LOCUS       DATIHC010000003         2508 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_9357, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000003 DATIHC010000000
VERSION     DATIHC010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2508
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9357"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1936)
                     /locus_tag="VLF16_00040"
     CDS             complement(<1..1936)
                     /locus_tag="VLF16_00040"
                     /EC_number="1.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013715783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent dehydrogenase, methanol/ethanol
                     family"
                     /protein_id="HSX69293.1"
                     /translation="MRSIGLAAPSACPSPDRQTAPRLPRSALFAAVLLAGFGHLAQAA
                     EMPADVDGKRIVAADQEPGNWMSHGRTYDEQRYSPLDEINQQNVGKLGLAWSYKLDLD
                     RGVEATPIVVDGVMYTTGPFSVVYALDARNGKLLWKYDPKSDRNRAGEACCDAVNRGV
                     AVWKGKVYVGVLDGRLEAIDAKTGQRVWSVDTRSDHNRSYTITGAPRVVNGKVIIGNG
                     GAEFGVRGYVTAYDAESGKQAWRFYTVPGDPKLPPEDKAMEIAAKTWYGDAFAEQGGG
                     GTAWDSFAFDPELNLLYIGVGNGSLWDPKWRSEAKGDNLFLSSIVAVDADTGEYAWHY
                     QTTPGDAWDFTATQHMILAELEIDGKERKVLMQAPKNGFFYVIDRATGELLSAENIVP
                     VNWAKGIDMKTGRPIVDDEAAAYWKDGKRKLVTPAFWGAHDWHPMSFNPKTGLVYIPA
                     HIMSAYYEHIPEAPARNPFKSMYQLGLRTGMMPEGPDGLLEMAKTWSGKLIAWDPVKQ
                     KAAWEVPYITIFNGGTLSTAGNLVFEGSADGRVIAYAAEDGKKLWEQPAASGVMAAPI
                     TYSVDGEQYVTFMAGWGGAFSTFAGALSLRAGVQPYAQVLTYKLGGTAKLQEPAPLAD
                     APKPPALTGDAATVEAGGKLY"
     gene            complement(2367..>2508)
                     /locus_tag="VLF16_00045"
     CDS             complement(2367..>2508)
                     /locus_tag="VLF16_00045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HSX69294.1"
                     /translation="LYPAHAAFGGYKKSGVGRETHKMMLDHYQQTKNLLVSYDINPLG
                     FF"
BASE COUNT          375 a          800 c          885 g          448 t
ORIGIN      
        1 cgtacagctt gccgcccgcc tcgacggttg ccgcatcgcc agtcagcgcc ggtggcttcg
       61 gtgcatcggc caatggcgcc ggctcctgca gcttggcggt accgccgagc ttgtaggtca
      121 gcacctgggc gtagggctgc acgccggcac gcagcgatag ggcgccggcg aaggtggaga
      181 acgcgccgcc ccagccggcc atgaaggtga cgtactgctc gccgtccacc gagtaggtga
      241 tcggtgcagc cattacgcca ctggctgcgg gttgctccca gagtttcttg ccatcctcgg
      301 cggcgtaggc gatcacccgc ccgtcggcgc tgccctcgaa caccaggttg ccggcggtgc
      361 tcagcgtgcc gccgttgaag atggtgatgt aaggcacttc ccaggcggcc ttctgcttca
      421 ctgggtccca ggcgatcagc ttgccggacc aggtcttggc catctccagc aggccgtccg
      481 ggccttccgg catcatgccg gtgcgcaggc cgagctggta catgctcttg aacgggttgc
      541 gcgccggcgc ctccgggatg tgctcgtagt aggcggacat gatgtgcgcc gggatgtaga
      601 ccaggccggt cttggggttg aacgacatcg ggtgccagtc gtgcgcgccc cagaacgccg
      661 gagtgaccag cttgcgcttg ccatccttcc agtaggcggc ggcctcgtcg tctacgatgg
      721 gccggccggt cttcatgtcg atgcccttgg cccagttcac cggcacgatg ttctcggccg
      781 acagcagctc gccggtggcg cggtcgatga cgtagaagaa gccgttcttc ggtgcctgca
      841 tcagcacctt gcgctctttg ccgtcgatct ccagctcggc gaggatcatg tgctgcgtgg
      901 cggtgaagtc ccaggcatcg cccggcgtgg tctggtagtg ccaggcgtac tcaccggtgt
      961 cggcatcgac ggcgacgatg gacgacagga acaggttgtc gcccttggcc tcgctacgcc
     1021 atttcggatc ccacaacgag ccgttgccga cgccgatata gagcaggttc agctccgggt
     1081 cgaaggcgaa ggagtcccag gctgtgccgc caccgccctg ctcggcgaag gcatcgccgt
     1141 accaggtctt ggcggcgatt tccatggcct tgtcttccgg cggcagcttg gggtcgcccg
     1201 gcacggtgta gaagcgccag gcctgcttgc cgctctcggc atcgtaggcg gtgacgtagc
     1261 cgcgcacgcc gaactcggcg ccgccgttgc cgatgatgac cttgccgttc actacccgcg
     1321 gcgcgccggt gatggtgtag ctgcgattgt ggtcggagcg ggtatcgacc gaccagacac
     1381 gctggccggt cttggcgtca atggcctcca ggcggccgtc gagtacgccg acgtagacct
     1441 tgcccttcca taccgccacg ccgcggttga ccgcatcgca acaggcctcg ccggcgcgat
     1501 tgcggtcgga tttggggtcg tacttccaca gcagcttgcc gttgcgcgcg tccagtgcgt
     1561 agaccaccga gaatggcccg gtggtgtaca tcacgccgtc gaccacgatc ggcgtggcct
     1621 ccacgccgcg gtccaggtcg agtttgtagc tccaggccag gccgagcttg ccgacgttct
     1681 gctggttgat ctcatccagc gggctgtaac gctgttcgtc gtaggtacgg ccgtggctca
     1741 tccagttgcc cggctcctgg tcggccgcga cgatgcgctt gccgtcgacg tcggcgggca
     1801 tctcggcggc ctgggcgagg tggccgaagc cggccagcag cacggcggcg aacagggcgg
     1861 aacggggtag acgcggggcg gtttgccggt cgggtgacgg gcaggcggaa ggcgcagcga
     1921 ggccaatcga tctcatggag tttctccgat tcttgttgtt gccccgacct ctcgcgccgg
     1981 ggcttggcag tgcttgagca acgcctgtgc cagcgcccgc acaatgggct gcaagccacg
     2041 cggcgcaagg ggtgcgcagt tatcggaggg agacctggga ggcgcaccgc ggcgcgacag
     2101 ctgtagcgtt cacacggacg tttgtcgcac cggcgcgacg cggcgatggc aagcgtcgtt
     2161 gcggtgaggg agaaaggctg ttcgaggacg ccgggcagga cgcccgaagc ggaaaaaaga
     2221 cgcggccgac gggccgcgtg ggacatcaat gcgccggccg gctacgggcc ctcgggggaa
     2281 ggcccgcgct cagtcgggcc ggacgacgca agcgcctcct tgcgcgcgat gaaagcgtgc
     2341 gcccgctgcg aagcgggcgc gaaggctcag aagaagccca gcgggttgat gtcgtagctc
     2401 accagcaggt tcttggtctg ctggtagtgg tcgagcatca tcttgtgggt ctcgcggccg
     2461 acgccggatt tcttgtagcc gccgaacgcg gcgtgcgccg ggtacaag
//
LOCUS       DATIHC010000004         4583 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30383, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000004 DATIHC010000000
VERSION     DATIHC010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4583
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30383"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..553)
                     /locus_tag="VLF16_00050"
     CDS             complement(<1..553)
                     /locus_tag="VLF16_00050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HSX69295.1"
                     /translation="MTTTKLKPTLGTLHLWGIAVGLVISGEYFGWSYGWGVAGTLGFL
                     VTTLMVAAMYSCFIFSFTELTTAIPHAGGPFAYSRRAFGPTGGMIAGMATLIEFVFAP
                     PAIAMAIGAYLNVQFPGLDPKLAAVGAYLIFMTLNILGVSIAATFELVVTVLAVAELL
                     VFMGVVAPGFSFSNFVLGGWAGSD"
     gene            855..1904
                     /locus_tag="VLF16_00055"
     CDS             855..1904
                     /locus_tag="VLF16_00055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004420398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSX69296.1"
                     /translation="MSLNIPHPLAMTDAPSNLGVLSAAASGLDRFIGLQGGDAERVFG
                     VAGIDPDLLLHPTLSLSLSNYCKVLEEAATQSGCDNFGLRYGQQFQPRALGLLGYVGL
                     CSESLEQALQNFARAFPYHQHDTLIRLVDIGECYRFDYQVRHPAILDKRQDAELTMGM
                     ALNLVRHVLGPTWAPRAVLFEHGKPEGWREHQAVFNAPILFDQPCNALLIPKRDLADQ
                     PMPERDPVLLMLVQDAIARLGGQQHQQCLVDQARGLVRDALPLGEPALEQIAAHLGLS
                     PAAFQRRLREQNLCFSALIDQVRRELALHYLRRRLPVSDLAPLLGYSETSAFSRAFRR
                     WFDTSPRQWLQTCSA"
     gene            1984..2478
                     /locus_tag="VLF16_00060"
     CDS             1984..2478
                     /locus_tag="VLF16_00060"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003452860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSX69297.1"
                     /translation="MNIRDAGEADLPAILAIYNDAVANTTAIWNETLVDLADRQAWLN
                     QRRAAGFPVLVAEDADGGVLGYASYGTWRGIEGFRHTVEHSVYVSGDQRGRGLGIALM
                     RALIERARAAGLHVMVAAIETENAASIGLHRRLGFEITGQMPQVGRKFGRWLDLTFMQ
                     LLLE"
     gene            complement(2483..2746)
                     /locus_tag="VLF16_00065"
     CDS             complement(2483..2746)
                     /locus_tag="VLF16_00065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DksA/TraR family C4-type zinc finger protein"
                     /protein_id="HSX69298.1"
                     /translation="MAGGWTNDGAVQDQIDSSIEDAVARARSQLPRGESLHHCEECDA
                     PIPEARRQAVPGVRLCVNCQAVHDREQAFSGYNRRGSKDSQLR"
     gene            2853..3590
                     /locus_tag="VLF16_00070"
     CDS             2853..3590
                     /locus_tag="VLF16_00070"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HSX69299.1"
                     /translation="MPGLRVLLILLFGCTVLLAQAETRVALDNANPPFMYRQDGRAMG
                     LYPRLLEAVFARIGEPLSLRPMPWKRALRRGAAGQMGIGGIYKNAARLEVFDYSAPIF
                     EERLLLYVQRGRAFAFARTEDLYGKRIGVIRGWSYTEAFDQATRAGRIDAEEGGSDEA
                     NLRKLASGRLDAVVAIELAGQRLLAEPGLENLQALPRPLSTNATHLVFARQAGKRELL
                     QRFDAALEAMRRDGSLQRLVEQVTTTP"
     gene            complement(3580..4443)
                     /locus_tag="VLF16_00075"
     CDS             complement(3580..4443)
                     /locus_tag="VLF16_00075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxaloacetate decarboxylase"
                     /protein_id="HSX69300.1"
                     /translation="MQRASHQDLRAQFRALLASNACYHTASVFDPMSARIAADLGFEV
                     GILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYGNALNAMRT
                     VVELERAGVAALTLEDTLLPAQFGRKSTDLIGVDEGVGKIRAALEARVDPGLAIIART
                     HAGVIEVDEVIRRTKAYQDAGADGICMVGIRDFEHLEAIAAHLSVPLMLVSYGNPNLR
                     DDARLASLGVRIVIDGHAAYFAAIKATYDCLREQRGVAASDLNATELTHKYTQPEDYI
                     VWAREYMNVKE"
BASE COUNT          733 a         1564 c         1548 g          738 t
ORIGIN      
        1 cgtcgctacc ggcccagcca cccagcacga agttgctgaa gctgaagccc ggcgccacca
       61 cacccatgaa caccagcagc tcggcgactg ccagcacggt gaccaccagt tcgaaggtgg
      121 cggcgatgct gacgccgaga atgttgaggg tcatgaagat gaggtaggca ccgaccgccg
      181 ccagtttcgg atcgagcccg gggaactgca cgttgaggta ggcgccaatg gccatggcga
      241 tggccggcgg agcgaagacg aattcgatca gggtggccat gccggcgatc atcccgccgg
      301 tgggaccgaa ggcacggcgg ctgtaggcga agggcccacc ggcgtgcggt attgcagtgg
      361 tcagctcggt gaagctgaag atgaagcagc tgtacatcgc cgccaccatc agcgtggtga
      421 ccaggaagcc cagcgtaccc gccacgcccc agccatagct ccagccaaaa tattccccgg
      481 aaatcaccag acccacggcg atgccccaca ggtgcagggt gccgagggtc ggtttcagtt
      541 tcgttgttgt cattgccaat tcctcgatgt gagagccacg tcagacgtcg atcgcttagc
      601 gaggatatcc agccaacccc ggccgagact tgaccttgca aagtccgcgc acggctgcag
      661 agtcaagtcg ccgcaagggc tgcagaccgc tctgcgccgg gcttttgcgc cacatgcgtg
      721 cactgcgcca cgagcgcgcc ccacggcgat gcatgaacac gccgcgcggt aagtccgttg
      781 gctgatgcag tgccctctca ggacggggca cgactattgc ttttgcctgc ccatcaccct
      841 ggcgcgcccc gtccatgtcc ctgaacattc cgcatccgct ggccatgacc gatgccccga
      901 gcaatctcgg cgtgctgtcg gccgccgcca gcggcctgga tcgtttcatc ggcctgcagg
      961 gtggcgatgc cgaacgggtg ttcggcgtgg ccggcatcga ccccgacctg ctgctgcacc
     1021 cgaccctgag cctgagtctg agcaactact gcaaggtgct ggaggaagcc gccacccagt
     1081 ccggctgcga caacttcggg ctgcgctacg gccagcagtt ccagccccgc gccctcggcc
     1141 tgctcggcta tgtcgggctg tgctcggaga gcctggagca ggcgctgcag aacttcgccc
     1201 gcgccttccc ctatcaccag cacgacacgc tgatccgcct ggtggatatc ggcgagtgct
     1261 accgcttcga ctatcaggtg cgccacccgg cgatcctcga caaacgccag gacgccgagc
     1321 tgaccatggg catggcgctg aatctggtgc gtcatgtgct gggcccgacc tgggcaccgc
     1381 gcgccgtgct gttcgagcac ggcaaaccgg aaggctggcg cgagcaccag gcggtgttca
     1441 atgcgccgat cctgttcgac caaccgtgca acgccctgct gattcccaag cgcgacctgg
     1501 ccgaccaacc gatgcccgaa cgcgacccgg tgctgctgat gctggtccag gacgccatcg
     1561 cccgcctcgg cggccagcag caccagcagt gcctggtcga ccaggcccgc ggcctggtgc
     1621 gcgacgccct gcccctgggc gagccggcgc tggagcagat cgccgcgcac ctcggtttga
     1681 gcccggcggc attccagcgc cgcctgcgcg aacagaacct gtgcttttct gcgctgatcg
     1741 accaggtgcg ccgcgaactg gccctgcatt acctgcgccg gcgcctgccg gtcagcgacc
     1801 tggcgccgct gctcggctac tccgagacca gcgccttctc ccgggccttc cgccgctggt
     1861 tcgataccag cccgcggcaa tggctgcaga cctgctcggc ctgaagaccg cgatccatgc
     1921 acgcactgct cgccgggccc gcgagcgcgt atgctcgccc gaccgagcgc ccctggagct
     1981 gacatgaaca tacgcgacgc cggcgaggcc gacctgcccg ccatcctcgc catctacaac
     2041 gacgccgtgg cgaacaccac ggcgatctgg aacgaaaccc tggtcgacct ggccgaccgc
     2101 caggcctggc tgaaccagcg ccgcgccgcc ggctttccag tgctggtggc ggaggacgca
     2161 gacggcggcg tgctcggcta cgccagctac ggcacctggc gcggcatcga gggcttccgc
     2221 cataccgtgg agcattcggt ctacgtgagt ggcgatcagc gcggccgcgg gctgggcatc
     2281 gccctgatgc gggcgctgat cgagcgcgcc cgcgccgccg gcctgcacgt gatggtggcc
     2341 gccatcgaaa cggagaatgc cgcctccatc ggcctgcacc gacgcctcgg gttcgagatc
     2401 accgggcaga tgccgcaggt gggccgcaag ttcgggcgct ggctcgacct caccttcatg
     2461 cagctgctgc tggaatagcg cctcagcgca gctggctgtc cttgctgccg cgccggttgt
     2521 agccgctgaa cgcctgctcg cggtcgtgca ccgcctggca gttcacgcac agccgcacgc
     2581 cgggcacggc ttggcggcgc gcctcgggaa tcggtgcgtc gcattcctcg cagtgatgca
     2641 ggctctcgcc gcgcggcagc tggctgcggg cgcgggcgac cgcgtcctcg atgctgctgt
     2701 cgatctggtc ctgcaccgcg ccgtcgttgg tccatcctcc ggccatggca acctccggga
     2761 tcatcgttcc cttgcagata tgagcccgct cgccggcgaa tgcaagcgca gcgtcggact
     2821 atgcttgcca tacggatggg gaggatctgt ccatgcctgg cctgcgcgtg ctgctgattc
     2881 tgttgttcgg gtgcaccgtc ctgctggcgc aggcggagac gcgggtcgcg ctcgacaacg
     2941 ccaacccgcc cttcatgtac cggcaggacg gccgcgccat ggggctttat ccgcggctgc
     3001 tggaggcggt cttcgcgcgt atcggcgagc cgctgagcct gcgcccgatg ccctggaagc
     3061 gcgccctgcg caggggcgcc gccgggcaga tgggcatcgg cggcatctac aagaacgccg
     3121 cgcgactgga ggtgttcgac tattccgcgc cgatcttcga ggagcgcctg ctgctctatg
     3181 tgcagcgcgg ccgggcgttc gccttcgcgc gcaccgagga cctgtacggc aagcgcatcg
     3241 gggtgatccg cggctggagc tataccgagg cgttcgacca ggccacgcgg gccgggcgga
     3301 tcgacgccga ggaaggcggc tccgacgagg ccaacctgcg caagctggcg tcgggtcgac
     3361 tggacgcggt ggtggccatc gaactggccg gccagcgcct gttggccgaa ccggggctgg
     3421 agaacctgca ggcgctgcca cggccgctga gcaccaatgc cacccacctg gtcttcgccc
     3481 ggcaggcggg caagcgcgag ctgctgcagc gcttcgacgc ggcgctggag gcgatgcgcc
     3541 gggacggctc gctgcagcgc ctggtcgagc aggtgaccac tactccttga cgttcatgta
     3601 ctcgcgcgcc cagacgatgt agtcctcggg ctgcgtgtac ttgtgcgtca gttctgtggc
     3661 gttgaggtcg ctggcggcaa cgccgcgctg ctcgcgcagg cagtcgtagg tggccttgat
     3721 cgcggcgaag taggcggcat ggccgtcgat cacgatgcgc acgccgaggc tggccaggcg
     3781 cgcgtcgtcg cgcaggttgg ggttgccgta gctgaccagc atcagcggca cgctgaggtg
     3841 cgcagcgatg gcctcgaggt gctcgaagtc gcggatgccg accatgcaga tgccatcggc
     3901 accggcgtcc tgataggcct tggtgcggcg gatcacctca tcgacctcga tgactccggc
     3961 atgggtgcgg gcgatgatcg ccagccccgg gtcgacgcgc gcctcaagcg ccgcgcggat
     4021 cttgccgacg ccttcgtcga cgccgatcag gtcggtggac ttgcgcccga actgggccgg
     4081 cagcagcgtg tcctcgaggg tcagcgcggc cacgccggcg cgctccagct cgaccacggt
     4141 gcgcatggcg ttgagcgcgt tgccgtagcc gtggtcggcg tcggcgatca ccggaaggcg
     4201 tgccacccgg ccgatgcggg tggcctgctc gacgaactcg ctcagggtga tcagggcgaa
     4261 gtccggcgcc gccagaactt gtagtgaagc tacagacccg cccaggatgc cgacttcgaa
     4321 acccaagtcg gcggcgatgc gggcggacat cgggtcgaac accgaagccg tgtggtagca
     4381 ggcgttggac gcgaggagcg cgcggaactg cgcgcggagg tcttgatgcg aggctctttg
     4441 catggggtgc actacgggct ggtttctaat ctctgagtgc ggcccattat gtagtaaaac
     4501 tacaaaacca gccagggcgc gatcgaatcg aacgcccggc tcgggccttg gaacgagtct
     4561 agaagacctt ctgcacaggg acc
//
LOCUS       DATIHC010000005         1543 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_25709, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000005 DATIHC010000000
VERSION     DATIHC010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25709"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..375
                     /locus_tag="VLF16_00080"
     CDS             <1..375
                     /locus_tag="VLF16_00080"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008365945.1"
                     /note="catalyzes the ATP-dependent formation of a
                     phosphodiester at the site of a single strand break in
                     duplex DNA; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HSX69301.1"
                     /translation="VLVYAQRGHGRRASLYTDYTFAVWDGPPDASERSLVPFAKAYSG
                     LTDEEMRRVDAIVRKTTVEKFGPVRSVTPTLVFELGFEGIALSKRHKSGIAVRFPRML
                     RWRHDKPVEEADTLAHLQDLLR"
     gene            393..>1543
                     /locus_tag="VLF16_00085"
     CDS             393..>1543
                     /locus_tag="VLF16_00085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSX69302.1"
                     /translation="MRARGWKPFPFQKEVWQAVAAGESGLLHATTGSGKTYAVWLAAL
                     NAFARPTPATTAGGQPRKRQPAAAPLAVLWITPMRALAADTQRALQAPLDELAIPWSL
                     GLRTGDTGSGERARQARRLPSALITTPESLTLLLTAADARERFAGLRMLVVDEWHELL
                     GNKRGVQLQLALARLRRWHPDLIVWGLSATLSNLPHAREVLLGNVEGRLVQGKQDKRL
                     RIDTLLPPGIERFPWAGHLGLRMLPQVVDEVEHSGACLLFTNTRSQAEVWYQALLEAR
                     PDWAGLIALHHGSLSREVRDWVELGLKEGRLKAVVCTSSLDLGVDFLPVERVLQIGSA
                     KGVARLLQRAGRSGHAPGRPSRISLVPTHALELVEAAAVRDAVAAGRIEG"
BASE COUNT          206 a          577 c          551 g          209 t
ORIGIN      
        1 gtgctggtct atgcccagcg cggccacggc cgccgcgcca gcctctacac cgactacacc
       61 ttcgccgtct gggacggccc gcccgacgcc agcgagcgca gcctggtgcc cttcgccaag
      121 gcctactcgg gcctgaccga cgaggaaatg cgccgggtcg atgccatcgt gcgcaagacc
      181 acggtggaga agttcggccc ggtgcgcagc gtcaccccca ccctggtgtt cgagctgggc
      241 ttcgagggca tcgccctgtc caagcggcac aagagcggca tcgccgtgcg cttcccgcgg
      301 atgctgcgct ggcgccacga caaaccggtc gaggaggccg acaccctcgc gcatctgcag
      361 gacctgttgc ggtgagcctg gcctcggact ggatgcgtgc gcgcggctgg aagccctttc
      421 ccttccagaa ggaggtgtgg caggcggtgg ccgctggcga gtccggcctg ctgcacgcca
      481 ccaccggctc cggcaagacc tacgcggtgt ggctggccgc gctgaacgcc ttcgcccggc
      541 ccacgccggc aaccacggcc ggtggtcagc cgcgcaagcg ccagccggcc gccgcgccgc
      601 tggccgtgct gtggatcacg ccgatgcgcg ccctggccgc cgacacccag cgtgccctgc
      661 aggcgccgct ggacgagctg gcgattccct ggagcctggg cctgcgcacc ggcgacaccg
      721 gcagcggcga acgcgcccgc caggcgcggc gactgcccag cgcactgatc acaacgcccg
      781 agagcctgac cctgctgctc accgccgcgg acgcccgcga gcgcttcgcc ggcctgcgca
      841 tgctggtggt ggacgagtgg cacgaactgc tcggcaacaa gcgcggcgtg cagctgcaac
      901 tggccctggc gcggctgcgg cgctggcacc ccgacctgat cgtctggggc ctgtcggcca
      961 ccctcagcaa cctgccgcat gcccgcgagg tgctgctggg caatgtcgag ggtcgcctgg
     1021 tgcagggcaa gcaggacaag cgcctgcgca tcgacaccct gctgcccccg ggcatcgagc
     1081 gcttcccctg ggccgggcac ctgggcctgc gcatgctgcc gcaggtggtc gacgaggtcg
     1141 aacacagcgg cgcctgcctg ctgttcacca acacccgctc gcaggccgag gtctggtacc
     1201 aggcgctgct cgaggcccgt cccgactggg ccgggctgat cgccctgcac cacggctcgc
     1261 tgtcgcgcga ggtgcgcgac tgggtcgaac tggggctcaa ggagggacgc ctgaaggccg
     1321 tggtgtgtac ctccagcctc gacctcggcg tggacttcct gccggtggag cgggtgctgc
     1381 agatcggctc ggccaagggc gtggcgcgcc tgctgcagcg cgccggccgc tccggccacg
     1441 cgccgggccg cccgtcgcgc atcagcctgg tgccgaccca tgcgctggag ctggtggagg
     1501 ccgccgccgt gcgcgacgcg gtggccgccg ggcgcatcga ggg
//
LOCUS       DATIHC010000006         2052 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42062, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000006 DATIHC010000000
VERSION     DATIHC010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42062"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(235..1146)
                     /locus_tag="VLF16_00090"
     CDS             complement(235..1146)
                     /locus_tag="VLF16_00090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010451949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HSX69303.1"
                     /translation="MTQPNALPAADQALLYPSPLKEFWQAFAHNKGAVGGLLFMLVIV
                     FCALFAPWVAPFDPSEQFRDALLTPPSWLEGGQMRFLLGTDELGRDLLSRLIHGARLS
                     LMIGLASVLMSLIPGILMGLVAGFFPRLLGPSIMRLMDIMLALPSLLLAVAIVAILGP
                     GLINTVIAIAIVSLPSYVRLTRAAVMGELGRDYVTAARLAGAGLPRLMFITVLPNCMA
                     PLIVQATLSFSSAILDAAALGFLGLGVQPPTPEWGTMLASARDYIERAWWVVSLPGLT
                     ILLSVLAINLMGDGLRDALDPKLKNAQ"
     gene            complement(1159..>2052)
                     /locus_tag="VLF16_00095"
     CDS             complement(1159..>2052)
                     /locus_tag="VLF16_00095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HSX69304.1"
                     /translation="GERRIDPEMHAEAMHRLGLDKPLPAQYLDYITKLAQGDLGESLR
                     TREGVWEEFLTLFPATLELSLAALLFAGTLGVIAGVIAALKRGSLFDHGVMGVSLAGY
                     SMPIFWWGLLLIMFFSVYLGWTPVSGRIDLLYDIEPKTGFMLIDTLLSEEEGAFQDAL
                     MHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYIRTARAKGLSPARVVFVHGLRNAL
                     IPVLTVFGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDYPVVQNGILLIACLVI
                     LVNFVVDILYGLVNPRIRHQR"
BASE COUNT          384 a          639 c          736 g          293 t
ORIGIN      
        1 actgctccct ctcccattta tgggagaggg ttggggagag ggcggagttg gcaattacac
       61 cctctccccc gtaaatggga gaggggagga aagaagccag cgttgcgtaa atgttcatgg
      121 cgggctcctt actgcgcatt cttcagcagt ggtagcccgg acttcagtcc gggggcgctt
      181 ggcggattgt cccggactga agtccgggct actggatttc gcatgctggg caccttactg
      241 cgcattcttc agtttcgggt cgagcgcatc gcgcagcccg tcgcccatca ggttgatcgc
      301 cagcacgctg agcaggatgg tcagccccgg cagcgacacc acccaccagg cgcgttcgat
      361 gtagtcgcgc gcggaggcca gcatggtgcc ccactcgggc gtcggcggct gcacgccgag
      421 gccgaggaag cccagggccg ccgcgtcgag gatggccgag gagaagctca gggtggcctg
      481 cacgatcaac ggcgccatgc agttgggcag cacggtgatg aacatcagcc gcggcagtcc
      541 ggcgccggcc agtcgggcgg cggtgacgta gtcgcggccc agctcgccca tcaccgcggc
      601 gcgggtcagg cgcacgtagc tgggcagcga gacgatggcg atggcgatca ccgtgttgat
      661 cagcccaggg ccgaggatgg cgacgatcgc cacggccagc agcagcgagg gcagggccag
      721 catgatgtcc atcaggcgca tgatcgaggg gccgagcagg cgcgggaaga agccggccac
      781 caggcccatg aggatgccgg ggatcagcga catcagcacc gaggccaggc cgatcatcag
      841 cgacaggcgc gcgccgtgga tcagccgcga gagcaggtcg cggcccagct cgtcggtgcc
      901 gagcaggaag cgcatctgcc cgccctccag ccaggatggc ggggtgagca gggcatcgcg
      961 gaactgttcg ctgggatcga agggcgccac ccatggcgcg aacagcgcgc agaacacgat
     1021 gaccagcatg aacagcaggc cgccgacggc gcccttgttg tgggcgaagg cctgccagaa
     1081 ctccttcagt ggcgaggggt agagcagcgc ctggtcggcg gcgggcaatg cattgggttg
     1141 agtcatgtgc gggcctcctt agcgctgatg acgaatgcgt gggttaacca ggccgtagag
     1201 gatgtccacg acaaagttga ccaggatcac caggcaggcg atcagcagga tgccgttctg
     1261 caccaccggg tagtcgcggg cgcctatggc ctcgatcagc catttgccga tgcccggcca
     1321 ggaaaagatg gtctcggtca gcacggcgcc ggccagcagg gttccgacct gcaggccgaa
     1381 cacggtgagc accgggatca gcgcgttgcg caggccatgc acgaacacca cgcgggccgg
     1441 cgagaggccc ttggcgcggg cggtgcggat gtagtcctcg cgcagcacct cgagcatcgc
     1501 cgagcgggtc atgcgagcga tcaccgccag gggaatggtg cccagcacga tggccggcag
     1561 gatcaggtgc atcagcgcgt cctggaacgc gccttcctct tccgagagca gggtgtcgat
     1621 cagcatgaag ccggtcttgg gttcgatgtc gtagagcagg tcgatgcgcc cggacaccgg
     1681 cgtccagccc aggtacacgg agaagaacat gatcagcagc aggccccacc agaagatcgg
     1741 catcgagtag ccggccagcg acacgcccat caccccgtgg tcgaacagcg agccgcgctt
     1801 gagggcggcg atcactccgg caatcacgcc gagcgtgccg gcaaacagca gggcggccag
     1861 ggacagctcc agggtcgccg ggaacagggt gaggaactcc tcccacacac cctcgcgggt
     1921 gcgcagcgac tcgccgaggt cgccctgggc cagcttggtg atgtagtcca ggtactgggc
     1981 cggcagcggc ttgtccaggc ccaggcggtg catggcctcg gcgtgcatct cggggtcgat
     2041 gcggcgctcg cc
//
LOCUS       DATIHC010000007         1718 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4692, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000007 DATIHC010000000
VERSION     DATIHC010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4692"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..891)
                     /locus_tag="VLF16_00100"
     CDS             complement(<1..891)
                     /locus_tag="VLF16_00100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1302 family protein"
                     /protein_id="HSX69305.1"
                     /translation="MIGSAMAVDFQLGEIDGQLDSSLSIGTSISTANPDPDQLNSATG
                     DDGRRNFRSGDAFSGIFKGTHDLQLSHGDFGVFLRGNYWYDYVLRDRDQRFKDVEDNN
                     RKLSAKSAGAELLDAFAYYNYDLADQPGSVRLGQQVVNWGESTFIQGGLNVVNPFNLS
                     ALRRPGSEVKEGLVPVNMFYVSQNLTDALSTDFFYQLDWEQTQLDNCGTFFSGNDFLA
                     DGCDGLDVGSVLNGVPLAVAALTPYGVNLTDEGIRIPRAKDQDARDGGQWGVSLRWFA
                     AELDTEFGAYVANYHSRLPYM"
     gene            1258..>1718
                     /locus_tag="VLF16_00105"
     CDS             1258..>1718
                     /locus_tag="VLF16_00105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019472166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX69306.1"
                     /translation="MTLKQLRYLIAIAEAGSFSAAARRAFIAQPALSRQIGLLESELQ
                     MQLLERQHDGVALTDAGRRLYEVARSVVQKLDSVKDELASTRGDPKGHVAISIPATAS
                     ALLLPEIIARAAEKFPSVALTVCDGLTREGGQAIELGKVDFGVVPNAEELE"
BASE COUNT          299 a          522 c          595 g          302 t
ORIGIN      
        1 catgtacggc aggcggctgt ggtagttggc cacgtaggcg ccgaactcgg tgtccagctc
       61 ggcggcgaac cagcgcagcg agacgcccca ctggccgccg tcgcgggcgt cctggtcctt
      121 ggcccgcggg atgcggatgc cctcgtcggt gaggttgacg ccatagggcg tcagcgccgc
      181 caccgccagc ggcacgccgt tcagcacgct gcccacgtcg aggccgtcgc agccatcggc
      241 gaggaagtcg ttgccggaga agaaggtgcc gcagttgtcg agctgggtct gctcccagtc
      301 gagctggtag aagaagtcgg tggacagggc gtcggtgagg ttctgcgaga cgtagaacat
      361 gttcaccggc accaggcctt ccttcacctc cgagcccggc cggcgcagcg ccgacaggtt
      421 gaacgggttg accacgttga ggccgccctg gatgaaggtg ctctcgcccc agttcaccac
      481 ctgctggccg aggcgcacgg agcccggctg atcggcgagg tcgtagttgt agtaggcgaa
      541 ggcgtcgagc agctccgcgc cggcggactt cgccgacagc ttgcggttgt tgtcctcgac
      601 gtccttgaag cgctggtcgc ggtcgcgcag gacgtagtcg taccagtagt tgccgcgcag
      661 gaacacgccg aagtcgccgt ggctgagctg caggtcgtgg gtgcccttga aaatgccgga
      721 gaaggcgtcc ccggagcgga agttgcgccg gccgtcgtcg ccggtggcgc tgttcagctg
      781 gtccgggtcg gggttggcgg tggagatgct ggtgccgatg gacagcgaag aatccagctg
      841 tccgtcgatt tcaccgagct ggaaatccac cgccatggca ctaccgatca tgcagctgag
      901 gggcagcagg agataaggcg gtttgagcaa accgtgcagt ctgaatctca tcactcattg
      961 tcctctttgt tgtcgagtga gaatcggatt tcacgcgcag aggacaacaa gccgcgaagt
     1021 tcgcgggcga agcagacccc gctccaccgg gagtggaacg ctggcattcg gcagaatgga
     1081 tgattcgctc gataggggtg tgctacggca ttacttattg ttctgcactg ttacgtcgag
     1141 ttgcggatac tcccttcgtc ctagtgtttc agggatacta gggaccctcg aaaagcccca
     1201 caaatagtgt cttcggatgg aagccataac gcttcggcat ggcccagaga gaaccgcatg
     1261 accctcaagc agctccgtta tctgatcgcc attgccgagg ccggcagctt ctccgcggcc
     1321 gcccgccggg cgttcatcgc ccagccggcg ctgagccggc agatcggcct gctggagagc
     1381 gagttgcaga tgcagctgct ggagcgccag cacgacggtg tggcattgac cgacgccggc
     1441 cggcgcctct acgaggtggc gcgctcggtg gtgcagaagc tcgattcggt gaaggacgaa
     1501 ctggcctcga cccgcggcga ccccaagggc cacgtggcca tctcgattcc ggccaccgcc
     1561 tcggcgctgc tactgccgga gatcatcgcg cgggccgcgg agaagttccc cagcgtggcg
     1621 ctgaccgtgt gcgacggcct gacccgcgaa ggcggccagg ccatcgagct gggcaaggtg
     1681 gacttcggcg tggtgcccaa tgccgaggag ctggagca
//
LOCUS       DATIHC010000008         2725 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_9367, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000008 DATIHC010000000
VERSION     DATIHC010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2725
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9367"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..747)
                     /locus_tag="VLF16_00110"
     CDS             complement(<1..747)
                     /locus_tag="VLF16_00110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HSX69307.1"
                     /translation="MQLSSLTAVSPVDGRYAGKTSALRPIFSEYGLIRFRVMVEVRWL
                     QRLAAHEGVAEVAPFSAEANALLDELAENFAIEHAERVKEIERTTNHDVKAVEYLLKE
                     QAAKLPELAAVSEFIHFACTSEDINNLSHALMLREGRDSVLLPLMKQIAAAIRELAVK
                     FAGVPMLSRTHGQPASPTTLGKELANVVYRLERQIAQVAAVPLLGKINGAVGNYNAHL
                     SAYPQIDWEANAKQFIEGDLGLQFNPYTTQI"
     gene            complement(824..1693)
                     /locus_tag="VLF16_00115"
     CDS             complement(824..1693)
                     /locus_tag="VLF16_00115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017677078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HSX69308.1"
                     /translation="MSIPSRSVKPVQGALLLALSALLFSLMGVGIREVSGGVNNETVV
                     FFRSLVGVFFFLPLLLVKGTHPLRTARPKAHLWRATYGLAAMYCFFYAIAHLPLADAM
                     LFTYSAPVFTPVLAWWLLKEPLTKRMLITSATGLIGVLLVAKPSEALFDALALVGLAA
                     SLLAAFAFVSIREMSDTEPAFRIVFYFSLFSALISAVPLTWAWQPLSQQQLGLLLAIG
                     LLATVSQIVMSKAYGLAPPGLIGPFAYLAIVFAGIIAWLRWGEIPDLTSIFGAALIFA
                     AGLLSIARRPVAH"
     gene            complement(1695..2315)
                     /gene="hflD"
                     /locus_tag="VLF16_00120"
     CDS             complement(1695..2315)
                     /gene="hflD"
                     /locus_tag="VLF16_00120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016780206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high frequency lysogenization protein HflD"
                     /protein_id="HSX69309.1"
                     /translation="MTPIQEQLIALSAVFQAAALVDKLARTGQISDAQLGCLLGSLLV
                     RDPKSTLEVYGGDDLNLREGYKALVSTLERNPTSLQREPLRYTLALLGLERQLAKRDD
                     LLQVIGTRLDQIQNQVEHFGPTHDNVVAACGGLYQDTISTFRQRIQVHGDMRFLQQPA
                     VASKVRALLLTGIRSARLWRQLGGHRWQLVFSRGKLLKELYPLLRG"
     gene            complement(2312..>2725)
                     /locus_tag="VLF16_00125"
     CDS             complement(2312..>2725)
                     /locus_tag="VLF16_00125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013791419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyltransferase beta-barrel
                     domain-containing protein"
                     /protein_id="HSX69310.1"
                     /translation="MYHTIGQRQGLGIGGMKNAGDEPWYVLHKDLKRNVLIVGQGNDH
                     PWLFSRALLASDIYWVNPIDLSSPRRLTAKVRYRQADQACTLETTEHGYRAVFDEPQR
                     AVTPGQSVVFYDGEVCLGGGVIEIAEPCAEGAPSA"
BASE COUNT          472 a          814 c          992 g          447 t
ORIGIN      
        1 gatctgggtg gtgtaagggt tgaactgcag gcccaggtcg ccctcgatga attgcttggc
       61 gttggcctcc cagtcgatct gcgggtaggc ggacaggtgg gcgttgtagt tgcccacggc
      121 gccgttgatc ttgcccagca gcggcacggc ggctacctgg gcgatctggc gttccagacg
      181 gtagacgacg ttggccagtt ccttgcccag ggtggtcggc gaggccggct ggccgtgggt
      241 gcgcgacagc atcggcacgc cggcgaattt gaccgccagc tcgcggatgg cggcggcgat
      301 ctgcttcatc agcggcagca gcacgctgtc gcggccttcg cgcagcatca gggcgtggga
      361 caggttgttg atgtcctcgc tggtgcaggc gaagtggatg aactcgctca cggcggccag
      421 ttcaggcaac ttggcggcct gctccttgag caggtattcc acggctttca cgtcgtggtt
      481 ggtggtgcgc tcgatctctt tcacgcgctc ggcgtgttcg atggcgaagt tctcggccag
      541 ctcgtcgagc agggcattgg cttcggcgga gaagggcgcc acttcggcga cgccttcatg
      601 ggcggccagg cgttgcagcc agcgcacttc gaccatcacg cggaaacgga tcaggccgta
      661 ttcgctgaag atcgggcgca aggcgctggt tttgccggcg tagcggccat cgacggggga
      721 aaccgcggtg agcgaggaga gctgcatgga ggcgttctcg gacaggtcgg tcaacgaaaa
      781 gggcgcacat catacatgaa ctcacccgga ctggcccgct tggctaatgt gcgactggtc
      841 ggcgggcgat ggacagcagg ccggccgcga agatcagcgc ggcgccgaaa atcgacgtga
      901 gatccggtat ctcgccccag cgcagccagg cgatgatgcc ggcgaagacg atggccaggt
      961 aggcgaaggg gccgatgagc ccgggcggcg ccaggccata ggccttggac atgacgatct
     1021 ggctgaccgt ggcgagcagg ccgattgcca gcagcaggcc gagctgctgc tggctcagcg
     1081 gctgccaggc ccaggtcagc ggcacggcag aaatcagcgc gctgaacagc gagaagtaga
     1141 aaacgatgcg gaaggccggc tcggtgtcgc tcatctcgcg gatcgacacg aaggcgaagg
     1201 ctgccagaag actggccgcc aggccgacca gggccagagc atcgaacagc gcctcgctgg
     1261 gcttggccac cagcagcacg ccgatcaggc cggtggcgct ggtgatcagc atgcgcttgg
     1321 tcagcggctc cttgagcagc caccaggcca ataccggcgt gaacaccggc gcggaatagg
     1381 tgaagagcat ggcgtcggcc agcggcaggt gggcgatggc gtagaagaag cagtacatcg
     1441 ccgccaggcc gtacgtggcc cgccagagat gggccttcgg gcgggcggtc ctgagcgggt
     1501 gtgtgccttt caccagcagc aacggcagga agaaaaagac cccaaccagg ctacgaaaaa
     1561 acaccaccgt ctcgttgttg accccgccgg agacttcgcg gatgccgacg cccatcagcg
     1621 agaagagcag ggcggagagg gccaggagca gagcgccctg gaccggcttc acgctgcggc
     1681 tgggaatgct cacgtcagcc ccgcagcagc gggtagagtt ccttgagcaa cttgccgcgg
     1741 ctgaacacca gttgccagcg atggccgccg agctggcgcc acaggcgcgc cgagcggatg
     1801 ccggtgagca gcagggcgcg caccttggaa gccacggccg gttgttgcag gaaacgcatg
     1861 tcgccatgca cctggatgcg ctggcggaag gtgctgatgg tgtcctgata cagcccgccg
     1921 caagcggcga cgacgttgtc gtgggtcggt ccgaagtgct cgacctggtt ctggatctgg
     1981 tccaggcggg tgccgatcac ctgcagcagg tcgtcgcgct tggccagctg gcgctccagg
     2041 ccgagcaggg ccagggtgta gcgcagcggc tcgcgctgca ggctggtcgg attgcgctcc
     2101 agggtgctga ccagggcctt gtagccttcg cgtagattga ggtcgtcgcc gccgtagact
     2161 tccagtgtgc tcttcggatc gcgcaccagc aggctgccga gcaggcagcc gagctgggcg
     2221 tcgctgatct ggcccgtgcg ggccagtttg tccaccaggg cggcggcctg gaatacggcg
     2281 gagagtgcga tcagctgttc ctggatcgga gtcatgcgct cggagctcct tccgcgcagg
     2341 gctcggcaat ttcgatcacg ccgccaccga ggcagacttc gccgtcgtag aacaccaccg
     2401 actgaccggg ggtgacggcg cgctgcggct cgtcgaacac cgcgcggtag ccgtgttcgg
     2461 tcgtctccag ggtgcaggcc tggtcggcct ggcggtagcg caccttggcg gtgaggcggc
     2521 gcgggctgga cagatcgatg ggattgaccc agtagatgtc cgaggcgagc agggcgcggg
     2581 agaacagcca ggggtggtcg ttgccctggc cgacgatgag cacgttgcgc ttcaggtcct
     2641 tgtgcagcac gtaccagggc tcgtcaccgg cattcttcat tccgccgatg cccaggccct
     2701 ggcgctggcc gatggtgtgg tacat
//
LOCUS       DATIHC010000009         2784 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4695, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000009 DATIHC010000000
VERSION     DATIHC010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2784
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4695"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..273
                     /locus_tag="VLF16_00130"
     CDS             <1..273
                     /locus_tag="VLF16_00130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012075072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspK"
                     /protein_id="HSX69311.1"
                     /translation="ALKTAIEGRGRTGYRDPGAFVQQLGAYAVSHQGLSTATQYFRVT
                     TEVLLGDRRQVLASYLQRGNDGRVRLMARDLGQEGLAPLPTEEPEK"
     gene            270..1415
                     /gene="gspL"
                     /locus_tag="VLF16_00135"
     CDS             270..1415
                     /gene="gspL"
                     /locus_tag="VLF16_00135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013714871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspL"
                     /protein_id="HSX69312.1"
                     /translation="MSLPTLFLPSQACTQVLAELPVWQVDGDICSQRPFAEALPAEAQ
                     PWRLVLPVEAVTVCLVQLPTTKARWLQKALPFAVEELLAEEVEQFHLSVGGQLADGRH
                     RVYAVRRAWLAGWLALCGGHLPQRIEVDADLLTGEGSQLLCLGERWLLGGSGEARLAL
                     RGEDWPQLAPLCPEPRVAYVAAGQAAPADVDESHELASPLAWLARQRAECNLAQGPFA
                     RREPSGQWQRWRPLAALLGLCLVLQWGFNLAQGWYLQREGERYAEASESLYRELFPGD
                     SKLINLRAQFDQHLSESQGGAQQQLLQLLDQAAAAIGEEGAQVQVQQLDFSAERGDLA
                     LNLQASDFSALESLRTRLQEAGLAVDMGSASREDNGVSARLVIGGNG"
     gene            1412..1921
                     /locus_tag="VLF16_00140"
     CDS             1412..1921
                     /locus_tag="VLF16_00140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016491964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein M"
                     /protein_id="HSX69313.1"
                     /translation="MSLVSQLQTRIAHNPLAARWHGLPPRDRLALGLLGGFLLLVLLY
                     LLLWRPVSQDLEQARSFLQQQRALHAYLQENAPQVQALQGRPQVDIDPTALQGLVTGS
                     AASQGLNIERLDNQGDGGLQVSLQPTDFGRLLRWLVSLEEQGVRVEEAGMERAEKGLV
                     STRLLLRAG"
     gene            2065..2140
                     /locus_tag="VLF16_00145"
     tRNA            2065..2140
                     /locus_tag="VLF16_00145"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2098..2100,aa:Val,seq:tac)
     gene            2163..2239
                     /locus_tag="VLF16_00150"
     tRNA            2163..2239
                     /locus_tag="VLF16_00150"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2197..2199,aa:Asp,seq:gtc)
     gene            2341..2466
                     /locus_tag="VLF16_00155"
     CDS             2341..2466
                     /locus_tag="VLF16_00155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011062261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69314.1"
                     /translation="MFGPHRHSKEDNPMDDYVEELLESRAVEQDPLEPAEDAFEL"
     gene            complement(2463..>2784)
                     /locus_tag="VLF16_00160"
     CDS             complement(2463..>2784)
                     /locus_tag="VLF16_00160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003244380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HSX69315.1"
                     /translation="RERIIHLLGPMLHGREPELEEVARKLQLPSWTLRRKLAEEGTQF
                     RTLLNETRRDLAMAYIRDTELAFGEIAFLLGFASAEAFQRAFKRWSGQTPGEFRRLQR
                     LQAG"
BASE COUNT          440 a          915 c          969 g          460 t
ORIGIN      
        1 gcgctgaaga cagccatcga ggggcgcgga cgcaccggct atcgcgatcc cggcgccttc
       61 gtccagcagc tcggcgccta cgcggtgagc caccaggggc tgagcaccgc cacccagtat
      121 ttccgcgtca ccaccgaagt gctgctgggc gaccggcgtc aggtgctggc gagttatctg
      181 caacgtggta atgatggacg cgtgcgcctg atggcgcgcg atctggggca ggagggcctg
      241 gcgcccctgc ccaccgagga gcccgaaaaa tgagcctgcc caccctgttt cttccttccc
      301 aggcctgtac ccaggtgctg gccgagctgc ccgtctggca ggtcgatggc gacatctgca
      361 gccagcgccc cttcgccgag gccctgccgg ctgaggcgca gccctggcgc ctggtgctgc
      421 cggtggaggc ggtgacggtg tgcctggtgc agctgcccac caccaaggcg cgctggctgc
      481 agaaggcatt gccgtttgcc gtggaggaat tgctggccga ggaggtcgag cagttccacc
      541 tgagcgtcgg tggacaactg gccgacggtc gtcaccgggt ctatgcggtg cgccgcgcat
      601 ggctggccgg ctggctggcc ctgtgcggcg gccacctgcc gcagcgcatc gaggtggatg
      661 ccgatctgct caccggcgag ggtagccagc tgctttgtct cggcgagcgc tggctgctcg
      721 gcggcagcgg cgaggcgcgc ctggccctgc gtggcgaaga ctggccgcag ttggcgccgc
      781 tgtgcccgga gccgcgcgtg gcctatgtgg cagccggcca ggcagcgccg gcggacgtcg
      841 atgaatccca cgaactggcg tcgccgctgg cctggctggc ccgccagcgc gccgagtgca
      901 acctggccca ggggccgttc gcgcggcgcg agccctccgg tcaatggcag cgctggcggc
      961 cgctggcggc gctgctcggc ctgtgcctgg tgctgcaatg gggcttcaac ctcgctcagg
     1021 gctggtacct gcagcgcgag ggcgagcgtt acgccgaggc cagcgagtcg ttgtaccgcg
     1081 agctgttccc cggtgacagc aaactgatca acctgcgtgc ccagttcgac cagcacctgt
     1141 ccgaatcgca gggcggtgct cagcagcagc tactgcagct gctcgaccag gccgccgcgg
     1201 ccatcggcga ggaaggcgcg caggtgcagg tgcagcagct ggacttcagc gccgagcgcg
     1261 gtgacctcgc gctcaacctg caggccagcg acttctcggc cctggagagc ctgcgcaccc
     1321 ggctgcagga ggcggggctg gcggtggaca tgggctcggc gagccgtgaa gacaacggcg
     1381 tcagcgcacg cctggtgatc ggaggcaacg gatgagcctg gtttcgcaac tgcagacacg
     1441 catcgcccac aatccgctgg ccgcgcgctg gcacggtctg ccgccgcgcg accgtttggc
     1501 cctgggcctg ctcggcggtt tcctgctact ggtcttgctc tacctgctgc tgtggcggcc
     1561 ggtcagccag gacctggagc aggcacgcag cttcctgcag caacagcgcg cgctgcacgc
     1621 ctacctgcag gagaacgcgc cgcaggtaca ggccctgcag gggcggccgc aggtcgatat
     1681 cgatcccacg gcactgcagg gcctggtcac cggcagtgcc gccagccagg ggctgaacat
     1741 cgaacgcctg gacaaccagg gcgacggcgg tctgcaggtg agcctgcagc ccaccgactt
     1801 cggccgcctg ctgcgctggc tggtgagcct ggaagagcag ggcgtgcgcg tcgaggaagc
     1861 cggcatggag agggccgaga aaggcttggt gagcacccgc ctgctgctgc gtgcgggttg
     1921 agggctgcac cggggcggtg ccgccggcac cgtaatcggg catgcgggcg tgctcgccaa
     1981 acccgtccgt gaagaaaaat ttcaagcagg gtgttgactt aggtaaggcc cctgcgtaaa
     2041 ttgcgccacc tcgcaaggct actcgggtga ttagctcagc cgggagagca tctgccttac
     2101 aagcagaggg tcggcggttc gatcccgtca tcacccacca tatctcttgc gagaaccgac
     2161 gcgcagcggt agttcagtcg gttagaatac cggcctgtca cgccgggggt cgcgggttcg
     2221 agtcccgtcc gctgcgccat atacagagaa gccctcagct cgcaagagct gggggctttt
     2281 cgcatctggg cctctgtcac cacagtgtca tcgggaatct tcagtctgtt ggcatggtct
     2341 ttgtttggac cacatcgcca ctcaaaggag gacaacccga tggatgacta cgtcgaagag
     2401 ctgctggagt cccgtgccgt cgagcaggac ccgctggaac ccgccgaaga cgcgttcgag
     2461 ctttaaccgg cctgcagtcg ctgaaggcgg cgaaactcac ccggagtctg cccgctccag
     2521 cgcttgaagg cccgttgaaa ggcctccgcg gaggcgaagc cgagcaggaa ggcgatctcg
     2581 ccgaaggcca gttcggtatc gcgaatgtag gccatggcca ggtctcgtcg cgtctcattg
     2641 agcagtgtgc ggaactgcgt cccttcttcc gccagcttgc gcctgagcgt ccagctcggc
     2701 agctgtaatt tcctcgccac ttcttcgagc tccggctcgc gcccgtgcag catcggcccc
     2761 agcagatgga tgatgcgctc gcgc
//
LOCUS       DATIHC010000010         2999 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_9376, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000010 DATIHC010000000
VERSION     DATIHC010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2999)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2999)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2999
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9376"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..722)
                     /locus_tag="VLF16_00165"
     CDS             complement(<1..722)
                     /locus_tag="VLF16_00165"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003247085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSX69316.1"
                     /translation="MAKLQHNVVITVPVYNEGPYILETLTSLAAQTYSDFRVLVADNA
                     STDDTQSICQAFCAQDSRFHYARHESNLGATANFKYCFDNTESELFMWLGGHDVLHPE
                     FLEEACARMAAHPGLSLVYSHTRWIDENNRTLGQTNGGNYVFQEPLAPQVRFLKLLNA
                     LDRCEAINQVIRRKFVDLPFRPIVSADLVFLCHLAAHGPFARIERPLYIRREIRKRTS
                     TMMERITGKRIDPQYQELAAFFT"
     gene            complement(804..1541)
                     /locus_tag="VLF16_00170"
     CDS             complement(804..1541)
                     /locus_tag="VLF16_00170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020290754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cephalosporin hydroxylase family protein"
                     /protein_id="HSX69317.1"
                     /translation="MNELERFEAEVQANIDGLHDDHDVQALSRVWLREITRHKYAYNF
                     RWMGRPIIQFPQDMMAMQELIWQIKPDLIIETGIAHGGSALYYASLLELVGGEGYVLG
                     IDIDIREHNRVEIERHPMSKRLQLLQGSSIDPETVRQVAEHVRGKQRVLVVLDSNHTH
                     DHVLQELRAYSPFVTRDSYLVVYDTLIEDMPEDLQSADRPWGRGNNPKTAVRTFMQEN
                     DRFEIDQRIVSKLLITVAPDGYLRCVG"
     gene            complement(1538..2251)
                     /locus_tag="VLF16_00175"
     CDS             complement(1538..2251)
                     /locus_tag="VLF16_00175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017132853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WbqC family protein"
                     /protein_id="HSX69318.1"
                     /translation="MRVVISQAMFFPWPGFLEQVRLADVFVHYNDVQFSKGSFTNRVQ
                     VKTAAGVRWLTVPLSGRTLEQSIAQVSIDDRENWRERHLALMRQAYAAAPYRDDMLAL
                     LENVYAAPAASIADLSGLSLQALCNYFQIGRQTRFMSVDELGIAGSGSQRVLDVVKAL
                     GGDTYVTGLGGRNYLDHQAFERAGIEVAYMNYSKTPYPQLHGDFTPFVSSLDMVANCG
                     REGAKLIQPSTISWREILQ"
     gene            complement(2248..2760)
                     /locus_tag="VLF16_00180"
     CDS             complement(2248..2760)
                     /locus_tag="VLF16_00180"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024812.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HSX69319.1"
                     /translation="MLEGPLIELRAWQEEDLPTLHALRNDLELQNLLLTQARPNSMER
                     VRRWLGDRSTQEHTLFFVIAQRGSGQCLGYVQLVNMHPLHRTAELGICLSPDAQGRGV
                     GREALELLERYARDVFALRKIVLQVQAEQGAAEFYRRQGYREVGRLVEHVFQNGRYCD
                     VLMMERLLPA"
     gene            complement(2774..>2999)
                     /locus_tag="VLF16_00185"
     CDS             complement(2774..>2999)
                     /locus_tag="VLF16_00185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69320.1"
                     /translation="FITACLGGSERIRCFVDQNPFLQGTTLFERPVVAPADLEASVDT
                     LLVGLNPAHARQIIGEIEAFNARALRCFYL"
BASE COUNT          563 a          926 c          942 g          568 t
ORIGIN      
        1 gtgaagaatg ccgccagttc ctggtattgc gggtcgatgc gcttgccggt gatgcgctcc
       61 atcatggtgg aggtgcgctt gcggatttcg cggcggatat acagcgggcg ctcgatacgg
      121 gcaaagggac catgcgcggc caggtggcag aggaacacca ggtcggcgct gacgatcggg
      181 cggaagggca agtcgacgaa cttgcgccgg atcacctgat tgatggcctc gcaacggtcc
      241 agcgcgttga gcagcttgag gaaacgcacc tgtggagcga gcggctcctg gaaaacgtag
      301 ttgccgccgt tggtctgacc cagcgtccga ttgttctcgt cgatccagcg ggtgtggcta
      361 tagaccaggc tgaggcccgg atgggccgcc atcctggcgc aggcttcctc gaggaactcc
      421 gggtgcagca catcgtgccc gccgagccac atgaacagtt cggactcggt gttatcgaag
      481 caatacttga agttcgcggt ggcgcccaga ttgctctcgt ggcgggcgta gtggaaccgc
      541 gagtcctgcg cacagaaggc ctggcagatg ctctgggtgt cgtccgtgga ggcgttgtcg
      601 gccaccagca cgcggaaatc ggagtaggtc tgggccgcca gagacgtgag cgtctcgagt
      661 atgtacggcc cttcgttgta aacgggcacg gtgatgacga cattgtgttg cagcttagcc
      721 atgagtttcc ccgcgacctg gaatggcggt ataccgcgag gcgctctgcc tgccggtaaa
      781 gaatgggatg tggtagcgcc ggctcagccg acgcagcgca gatagccgtc aggcgcgacg
      841 gtgatcagca gcttgctgac gattcgctga tcgatctcga agcggtcgtt ttcctgcatg
      901 aaggtcctga cggcggtctt gggattattg ccgcgccccc acgggcggtc agccgattgc
      961 aggtcctccg gcatgtcctc gatgagcgtg tcgtagacca cgagatagct gtcccgggta
     1021 acgaacgggg aatacgcgcg cagttcctgc agaacatggt cgtgggtgtg gttggagtcc
     1081 agcaccacca gcacccgctg cttgccccga acatgctcgg ccacctggcg gaccgtctcg
     1141 ggatcaatgg acgacccttg tagcaactgc agacgcttgc tcatcggatg ccgctcgatc
     1201 tccacccggt tgtgttcgcg gatatcgatg tcgatgccca ggacgtagcc ctcgccgccc
     1261 accagctcca gcagggaggc gtagtacagc gccgagccac cgtgggcgat gcccgtctcg
     1321 atgatgagat cgggcttgat ctgccagatc agctcctgca tcgccatcat gtcctggggg
     1381 aactggatga tcggtcgccc catccagcgg aagttgtagg cgtacttgtg ccgcgtgatc
     1441 tcgcgtagcc agacacgtga cagcgcctgc acgtcgtggt cgtcgtgcag cccatcgata
     1501 ttggcctgta cctcggcctc gaaacgctct agctcattca ttgcaaaatc tcccgccagg
     1561 atatcgtgct gggttggatc agtttggccc cctctcgccc gcagttggcg accatgtcga
     1621 ggctcgacac gaagggggtg aaatcgccgt gcagctgtgg gtaaggggtc ttgctgtagt
     1681 tcatgtaggc cacttcgata ccggcgcgct cgaatgcctg gtgatccagg taattcctgc
     1741 ctccgaggcc cgtcacatag gtgtcgcccc cgagtgcctt gacgacatcc agcacgcgct
     1801 ggctgccgct tcctgcgata ccgagctcgt cgaccgacat gaagcgggtc tgacggccga
     1861 tctggaaata attgcaaagc gcctgcaacg acaggccact caggtcggcg atggatgccg
     1921 ccggcgcggc atagacattt tccagcagcg ccagcatgtc gtcgcgatag ggtgcggcgg
     1981 cgtatgcctg acgcatcagc gccagatgcc gttcacgcca gttctcgcgg tcatcgatgc
     2041 tgacctgcgc aatgctctgt tccagcgttc ggcccgacag cggaaccgtc agccagcgaa
     2101 cgcccgccgc cgtcttgacc tgcacgcggt tggtgaagct gcccttggaa aactgcacat
     2161 cgttgtaatg cacgaacaca tcggccaggc gcacctgctc cagaaagccc ggccagggaa
     2221 agaacatggc ctgagaaatg accactctca tgccggcagc aacctttcca tcatcaagac
     2281 atcgcaatag cggccgttct ggaagacgtg ctcgaccagg cgccccactt cacgatatcc
     2341 ctggcgtcga tagaactcgg cagcgccctg ctccgcctgg acctgcagca cgatcttgcg
     2401 cagcgcgaac acatcccggg catagcgctc cagcagttcc agcgcctcgc gaccaacgcc
     2461 ccgaccttga gcatcggggg acaggcagat gccgagctcc gccgttcgat gcaacgggtg
     2521 catgttcacc agctgcacat agcccaggca ctgccccgag ccgcgctggg cgatcacgaa
     2581 gaacagggtg tgctcctggg tgcttctgtc gccgagccac cgcctgacgc gctccatcga
     2641 attgggcctg gcctgggtca gcagcaggtt ctgcagttcc aggtcgttgc gcagcgcgtg
     2701 gagggtcggc agatcctcct cttgccaggc gcgcagctcg atcagtggtc cttcaagcat
     2761 cgatgaacac ctttcacaga tagaaacagc gcagcgctcg cgcgttgaag gcttcgatct
     2821 cgccgatgat ctgccgcgca tgggccggat tcagccccac caacagggta tcgaccgacg
     2881 cctcgagatc agccggcgca accaccggtc tctcgaacag ggtcgtgccc tggagaaacg
     2941 gattctgatc gacgaagcag cggattcgct cgctgccgcc caggcacgcg gtgatgaac
//
LOCUS       DATIHC010000011         1919 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35098, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000011 DATIHC010000000
VERSION     DATIHC010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1919
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35098"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..405)
                     /gene="ispF"
                     /locus_tag="VLF16_00190"
     CDS             complement(<1..405)
                     /gene="ispF"
                     /locus_tag="VLF16_00190"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HSX69321.1"
                     /translation="MRIGHGYDVHRFGEGGFITLGGVRIPHKFGLIAHSDGDVLLHAL
                     SDALLGACALGDIGKHFPDTDPTFKGADSRALLRHVLGLIHAKGYVVGNVDATIVAQA
                     PKMAPHIEAMRGLIAEDLQVELDAVNVKATTTE"
     gene            complement(480..737)
                     /locus_tag="VLF16_00195"
     CDS             complement(480..737)
                     /locus_tag="VLF16_00195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69322.1"
                     /translation="MSLREWLGLALLMAALASMPFAGWLSRDWLFVTLALVCVGGPLF
                     FISRRRRRIDRTENGDAERLPVLGEARGFAGHRAFDDGADD"
     gene            complement(741..1583)
                     /gene="fghA"
                     /locus_tag="VLF16_00200"
     CDS             complement(741..1583)
                     /gene="fghA"
                     /locus_tag="VLF16_00200"
                     /EC_number="3.1.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018738 - S-formylglutathione hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0046292 - formaldehyde metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HSX69323.1"
                     /translation="MTLEIVSSNKSCGGWHKRYRHRSTALNCDMVFAVYLPPQAEQGA
                     KLPVLYWLSGLTCTDENFMQKAGAQKLAAELGLIIVAPDTSPRGEGVPDDANKAWDFG
                     LGAGFYLNATQEPWARHYRMYDYVVQELPALIEANFPVTDKRGIAGHSMGGHGALICA
                     LKNPGRYQSVSAFSPITNPLNCPWGEKAFSNYLGDDRSRWREWDACVLLAEATEKLPI
                     LVDQGDRDDFLEVQLKPQSLQAAAKAAEHPLTLRMQPGYDHSYYFIASFIDDHLRHHA
                     AALS"
     gene            complement(1686..>1919)
                     /locus_tag="VLF16_00205"
     CDS             complement(1686..>1919)
                     /locus_tag="VLF16_00205"
                     /EC_number="1.1.1.284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252319.1"
                     /note="catalyzes the formation of S-formylglutathione from
                     S-(hydroxymethyl)glutathione; also catalyzes the formation
                     of aldehyde or ketone from alcohols; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-(hydroxymethyl)glutathione dehydrogenase"
                     /protein_id="HSX69324.1"
                     /translation="GQEISTRPFQLVTGRVWRGSAFGGVKGRTELPSYVEKSQKGEIP
                     LDTFITHTMGLGEINTAFDLMHEGKSIRTVIHF"
BASE COUNT          335 a          630 c          636 g          318 t
ORIGIN      
        1 ctcggtggtg gtggccttga cgttgactgc gtccagctcg acctgcaggt cctcggcgat
       61 caggccgcgc atggcctcga tatgcggcgc catcttcggc gcctgggcga cgatggtggc
      121 gtcgacgttg ccgaccacat agcccttggc gtggatcagg ccgagcacat ggcgcagcag
      181 cgcgcggctg tcagcgccct tgaaggtcgg gtcggtatcg gggaagtgct tgccgatatc
      241 gcccagagcg caggcgccga gcaaagcgtc gctcagagca tgtagcagca cgtcgccatc
      301 ggaatgggcg atcaggccga acttgtgcgg gatgcgcacg ccgccgaggg tgatgaagcc
      361 gccctcgccg aagcgatgaa cgtcgtagcc atggccaata cgcataagaa gaacacccgg
      421 aaaaatcagg tcgcgattct accccaggcc gtcatcctgc gaacccttcg catccgccct
      481 cagtcgtcag ccccgtcgtc gaaggcgcga tgcccggcga accccctggc ctcgcccagc
      541 accggaagcc gctcggcatc gccattttcc gtccgatcaa tacgccgcct gcggcgcgag
      601 atgaagaaca gcggcccgcc gacgcacacc agcgcaagcg tgacgaacag ccagtccctg
      661 ctcagccacc cggcgaaagg catcgacgcc agcgccgcca tcagcagcgc cagcccgagc
      721 cactcgcgca ggctcatcga tcagctcagc gccgccgcat ggtggcgcag gtgatcgtcg
      781 atgaagctgg cgatgaagta gtaactgtgg tcgtaacccg gctgcatgcg cagggtcagc
      841 ggatgctcgg cagccttggc cgcggcctgc agtgactggg gcttgagctg gacctcgagg
      901 aagtcgtcgc ggtcgccctg gtccaccagg atcggcagct tctccgtggc ctcggccagc
      961 aacacgcagg catcccactc gcgccagcgc gaacggtcgt cgcccaggta attggagaag
     1021 gccttctcgc cccaggggca gttgagcgga ttggtgatcg gcgaaaacgc cgagaccgac
     1081 tggtagcgcc caggattctt caacgcacag atcagtgcac cgtggccgcc catggagtgg
     1141 ccggcgatgc cgcgcttgtc ggtgaccggg aagttggcct cgatcagcgc cggcagctcc
     1201 tgcaccacgt agtcgtacat gcggtagtgg cgtgcccagg gctcctgggt ggcgttgagg
     1261 tagaagccgg caccgagacc gaagtcccag gccttgttgg cgtcatccgg cacgccttcg
     1321 ccacgcgggc tggtgtccgg cgcgacgatg atcaggccga gctcggccgc cagcttctgc
     1381 gcgccggcct tctgcatgaa gttctcgtcg gtgcaggtca ggccgctcag ccagtacagc
     1441 accggcagtt tggcgccctg ctccgcctgc ggcggcaggt acacggcgaa caccatgtcg
     1501 cagttgagcg cggtggagcg gtggcggtag cgcttgtgcc agccgccgca gctcttgttg
     1561 ctggaaacga tttcgagggt catgagccag ttccgtaggg tgcgccatgc gcaccagtgg
     1621 agtttcggtg cgcatggcgc accctacgcg aaaaccgcga agccatgagg cctcgcgact
     1681 cggcatcaga agtgaatgac ggtgcggatg ctcttgcctt cgtgcatcag gtcgaaggcg
     1741 gtgttgatct cgcccaggcc catggtgtgg gtgatgaagg tgtccagcgg gatctcgccc
     1801 ttctgcgact tctccacata gctcggcagc tcggtgcggc ccttgacgcc gccgaacgcc
     1861 gaaccgcgcc acacgcgccc ggtcaccaac tggaacggac gggtgctgat ctcctggcc
//
LOCUS       DATIHC010000012         2921 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35103, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000012 DATIHC010000000
VERSION     DATIHC010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2921
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35103"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1057
                     /locus_tag="VLF16_00210"
     CDS             <1..1057
                     /locus_tag="VLF16_00210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69325.1"
                     /translation="MTDRFYTKDYRPEIYTAEGLAWVENTTMVDVIKRHNPELDGSLV
                     GVENAFKPWGLNIPADYETWPAKAKADNLWVNGALRSQYAEGELPAIPPVDIGGLISS
                     VLWKKVQERTDVAPAGYEKAMHPNGVMAKVKFSAVPGNPYTGLFQGADNGLLRLSVAG
                     DPATNGFQPGLAWKAFVDGKPSQNVSALYTLSGQGSNHNFFANELSQFVLPETNDTLG
                     TTLLFSLVSLKPTLLRVDDMAEVTQTGQAVGSVKAPTQIYFVPKSELRNLFATDAHDF
                     RNDLTTLAAGTKLYDVYATSMAIKTSIFPSSNRSYAQQRRNSAVKIGELELTSPFIAS
                     AFGDNGVFFKHQRSEDK"
     gene            1281..2792
                     /gene="gspE"
                     /locus_tag="VLF16_00215"
     CDS             1281..2792
                     /gene="gspE"
                     /locus_tag="VLF16_00215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system ATPase GspE"
                     /protein_id="HSX69326.1"
                     /translation="MSIDTHAALAAPAEPPLRSLPFAFAKRHGVLLRESYGQAQLQVR
                     RGASLTAVQEAQRFAGRVLPLQWLEPEAFEEQLSLAYQRDSSEVRQMAEGLGAELDLA
                     SLAELTPESGDLLEQEDDAPIIRLINAILSEAIKAGASDIHLETFEKRLVVRFRVDGI
                     LREVIEPRRELAALLVSRVKVMARLDIAEKRVPQDGRISLKVGGREVDIRVSTLPSAN
                     GERVVLRLLDKQAGRLSLQHLGMSERDRRLLDENLRKPHGIILVTGPTGSGKTTTLYA
                     GLVTLNDRSRNILTVEDPIEYYLEGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGE
                     IRDQETADIAVQASLTGHLVLSTLHTNSAVGAVTRLVDMGVEPFLLSSSLLGVLAQRL
                     VRVLCVHCREARPADEAECGLLGLDPQTQPLIHHAKGCPECHQQGYRGRTGIYELVIF
                     DDKMRTLVHNGVGEQELLRHARSLGPSIRDDGRRKVLEGVTTLEEVLRVTRED"
     gene            2792..>2921
                     /locus_tag="VLF16_00220"
     CDS             2792..>2921
                     /locus_tag="VLF16_00220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspF"
                     /protein_id="HSX69327.1"
                     /translation="MAAFEYLALDPKGRQQKGVLEGDSARQVRQLLREKQLSPLQVE"
BASE COUNT          533 a         1001 c          911 g          476 t
ORIGIN      
        1 gatgaccgac cgcttctaca ccaaggacta tcgcccggag atctataccg ccgaaggcct
       61 ggcctgggtc gagaacacca ccatggtcga cgtgatcaag cgccacaacc cggagctgga
      121 cggcagcctg gtgggtgtcg agaacgcgtt caagccttgg ggtctgaaca tcccggccga
      181 ctacgagact tggccggcca aggccaaggc cgacaacctg tgggtcaatg gcgccctgcg
      241 cagccagtac gccgaaggcg aactgccggc gattccgccg gtggacatcg gtggcctgat
      301 cagctcggtg ctgtggaaga aggtgcagga gcgcaccgac gtggccccgg ctggctacga
      361 gaaggccatg caccccaacg gcgtgatggc caaggtcaag ttcagcgcgg tgccgggtaa
      421 tccctacacc ggcctgttcc agggggccga caacgggctg ctgcgcctgt ccgtggccgg
      481 cgacccggcc accaacggct tccagcctgg cctggcctgg aaggccttcg tcgatggcaa
      541 gccgtcgcag aacgtctcgg cgctctacac gctgagcggg cagggcagca accacaactt
      601 cttcgccaac gagctttcgc agttcgtcct gccggagacc aacgacaccc tgggtaccac
      661 gctactgttc tcgctggtca gcctgaagcc gaccctgctg cgggtcgacg acatggccga
      721 agtcacccag accggtcagg ccgtgggttc ggtcaaggcg ccgacgcaga tctacttcgt
      781 gccgaagtcg gagctgcgca acctgttcgc caccgacgcc catgacttcc gcaacgatct
      841 gacgaccctg gcggccggca ccaagctcta tgacgtctac gccacctcga tggcgatcaa
      901 gacctcgatc ttcccgtcgt ccaaccgcag ctacgcccag cagcgtcgca acagcgcggt
      961 gaagatcggc gagctggaac tgacctctcc gttcatcgcc tccgcgttcg gcgacaacgg
     1021 tgtgttcttc aagcaccagc gcagcgaaga caagtaacag gagcctgcta gaaagaaccc
     1081 cggccgatgc cggggttctt tttttgtgct cggatgtagg ggcataacga atttatccgg
     1141 gcgttgtcgc tcgaatgtcg tagctgcgaa atcggcactg cagattccgc tgaaatccgt
     1201 taacttggcg cgtcagtcgt gccgcataac aagaaaaaca acagctagat ggatcttctg
     1261 tttcaggaac gggcccgcac atgtccatcg acacccatgc cgcgctagcg gccccggcag
     1321 agccgccgct gcgctctttg cccttcgcct tcgccaaacg ccacggcgtg ctgctgcgcg
     1381 aatcctatgg tcaggcccag ctgcaggtcc gccgcggcgc cagcctcacc gccgtgcagg
     1441 aggcccagcg tttcgccggc cgggtgctac cgctgcagtg gctggaaccc gaggctttcg
     1501 aggaacagct gtcgctggcc taccagcgcg attcttccga ggtgcggcag atggccgagg
     1561 gcctcggtgc cgaactcgat ctggccagcc tggccgaact cactcccgaa tccggtgacc
     1621 tgctggagca ggaagacgat gcaccgatca tccgcctgat caacgccatc ctcagcgagg
     1681 cgatcaaggc cggcgcctcc gacatccacc tggaaacctt cgaaaaacgc ctggtcgtgc
     1741 gctttcgcgt cgacggcatc ctgcgtgaag tgatcgagcc gcgccgcgag ctggcggcct
     1801 tgctggtctc gcgggtcaag gtcatggcgc gcctggacat cgccgagaag cgcgtgccgc
     1861 aggacggccg catctcgctc aaggtcggtg gccgcgaagt ggatattcgc gtctccacgt
     1921 tgccgtcggc caatggcgag cgtgtggtgc tgcgtctgct ggataagcaa gccgggcgtc
     1981 tgtcgctgca gcacctgggc atgagcgagc gcgaccgccg cctgctcgac gagaacctgc
     2041 gcaagcccca cggcatcatc ctggtcaccg gccccaccgg ttcgggcaag accaccaccc
     2101 tgtacgccgg cctggtcacc ctcaacgacc gctcgcgcaa catccttacg gtggaagacc
     2161 ccatcgagta ctacctggaa ggtatcggcc agacccaggt caacccgcgg gtggacatga
     2221 ccttcgcccg cggcctgcgc gccatcctgc gccaggaccc ggacgtggtg atggtcggcg
     2281 agatccgtga ccaggaaacc gccgacatcg ccgtgcaagc ctcgctcacc ggtcacctgg
     2341 tgctctccac cctgcacacc aacagcgccg tcggcgccgt cacccgcctg gtggacatgg
     2401 gcgtcgagcc cttcctgctg tcctcatcct tgcttggcgt gctggcccag cgcctggtgc
     2461 gcgtgctctg cgtgcattgc cgcgaggcgc gcccggccga cgaggccgaa tgcggcctgc
     2521 tcggcctcga tccgcagacc cagccgctga tccaccacgc caagggctgc cccgagtgcc
     2581 accagcaggg ctaccgcggc cgtaccggca tctatgaact ggtgattttc gacgacaaga
     2641 tgcgcaccct ggtgcacaac ggcgtcggcg agcaggagct gctgcggcac gcccgcagcc
     2701 tcggcccgag catccgtgac gatggtcggc gcaaggtgct ggaaggggtg accaccctgg
     2761 aagaagtcct gcgcgtcact agagaggact gatggccgcc ttcgagtacc tcgccctgga
     2821 ccccaagggt cgccagcaga aaggcgtgct ggaaggcgac agcgcccgcc aggtgcgcca
     2881 gctgctgcgc gagaaacagc tgtcgccgct gcaggtcgag c
//
LOCUS       DATIHC010000013         4436 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_39731, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000013 DATIHC010000000
VERSION     DATIHC010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4436)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4436)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4436
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39731"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..772
                     /locus_tag="VLF16_00225"
     CDS             <1..772
                     /locus_tag="VLF16_00225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HSX69328.1"
                     /translation="AFAGAKNHMVIMPDAPKDQVLSNLLGASCGAAGQRCMAISVAVF
                     VGESKAWIDELAAQMAELKPGHWKDPSSAYGPLISQQAKQRVQKLIAEGKAEGAECLL
                     DGSQCEVAGYPNGNWLGPTLFRGVTTGMSLYREEIFGPVLVCMEVDTLEEAIELVNAS
                     PYGNGTSIFTRSGGAARHYQHAVEVGQVGINVPIPVPLPFFSFTGWKGSFYGDLHAYG
                     KQAVRFYTETKTVTSRWFDDTLGGNPPVSGPNMTIQLK"
     gene            879..2126
                     /locus_tag="VLF16_00230"
     CDS             879..2126
                     /locus_tag="VLF16_00230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013714569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSX69329.1"
                     /translation="MKRLTACLALWVGLTAAAQAAEPITLGLSYPRTGSYKEEGLAQM
                     RGALLAIDELNAQGGVLGRPLRLSSLDDASRPEKAARNVDKLAGEGAVMLFGGASSAA
                     AIAAGKRAQEKGLLYFGTLTYSNDTTGKDGHRYLFRECNSAWMSARVLGQYLARHLPD
                     KRYFYVTADYTWGTTTESSLRETTGTQDGARNPGLKVPFPGARMADYQNALTQAAQSD
                     AEVLVLVLFGEDLVRAMRVAEDLGLAGKVQIVAPNLTQGIVEQAGPGLMEGVLGTEPW
                     TWRVPELEGSQAGQAFVRNFEQRYEVYPSSAAASAYSIVLQWADAAGRARSLESEALI
                     GALEGHRYSLLKGPQQWRGFDHQNVQTVYAVKVKTRAEIMASPRRQDYFEIVHRLDGE
                     QAAPSLAEWQAERRAAGQPTTLQ"
     gene            2133..3296
                     /locus_tag="VLF16_00235"
     CDS             2133..3296
                     /locus_tag="VLF16_00235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isobutyryl-CoA dehydrogenase"
                     /protein_id="HSX69330.1"
                     /translation="MDFELNEEQRLLVDSARAFAARELAPHAADWDREHHFPVEVIRR
                     AAEQGYLALYIGEEDGGLGLSRLTSSLIFEQLAAGCVATTAYLTIHNMATWMLASFAD
                     QALKDTWLAGLTTGELLASYCLTEPDAGSDAAHLRTRARREGDDYVLDGSKCFISGAG
                     STDVLIVMARTGEDGAKGISCFLVPAGAEGVKYGRNEDKMGWKAQPTRTITFEGVRIP
                     AGNRIGPEGQGFVYAMKGLDGGRLNIASCSLGAAQAALEQSLRYVEERRQFGKQLSEF
                     QALQFKLADMLTDLTASRQMVRLAAHKLDNRHGEASLYCAMAKRFATDHCFTLCNEAL
                     QLHGGYGYLNDYPLERWVRDSRVHQILEGTNEIMRVIVARRLLDQGGMLDRLL"
     gene            3406..4224
                     /locus_tag="VLF16_00240"
     CDS             3406..4224
                     /locus_tag="VLF16_00240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009618757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HSX69331.1"
                     /translation="MTTSIEAYNPGMFDLTHKLTVEKHGHTALITINHPPANTWDRDS
                     LIGLKQVIEHLNRDDDIYALVVTGQGSKFFSAGADLNLFADGDKARAREMARRFGEAF
                     ETLRDFRGVSIAAINGYAMGGGLECALACDIRIAERQAQMALPEATVGLLPCAGGTQN
                     LPWLVGEGWAKRMILCGERIDAETALRIGLIEQVVDSGEARGTALLLAAKVARQSPVA
                     VRTIKPLIQGARERGPNTWLGDERERFVDLFDADDTREGVNAFLEKRDAQWRNK"
     gene            4334..>4436
                     /locus_tag="VLF16_00245"
     CDS             4334..>4436
                     /locus_tag="VLF16_00245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69332.1"
                     /translation="MNVTFEERPALHGFRIGIASLDAEKSLNALTLPM"
BASE COUNT          815 a         1561 c         1429 g          631 t
ORIGIN      
        1 ggccttcgcc ggcgccaaga accacatggt gatcatgccc gacgcgccga aggaccaggt
       61 gctcagcaac ctgctcggcg ccagctgcgg cgccgccggc cagcgctgca tggcgatcag
      121 cgtggcggtg ttcgtcggcg aatcgaaagc ctggatcgac gaactggccg cgcagatggc
      181 cgagctcaag ccgggccact ggaaggaccc cagttccgcc tacggcccgc tgatcagcca
      241 acaggccaag cagcgcgtgc agaagctgat cgccgagggc aaggcggaag gcgccgagtg
      301 cctgctcgac ggctcgcagt gcgaagtagc tggctacccc aacggcaact ggctgggccc
      361 gaccctgttc cgcggcgtga ccaccgggat gagcctgtac cgcgaggaaa tcttcggccc
      421 ggtgctggtg tgcatggagg tcgataccct ggaagaggcc atcgagctgg tcaacgccag
      481 cccctacggc aacggcacca gcatcttcac ccgctccggc ggcgcggcgc ggcattacca
      541 gcatgcagtg gaagtcggcc aggtgggcat caacgtgccg atcccggtgc cgctgccgtt
      601 cttctccttc accggctgga agggctcgtt ctatggcgac ctgcacgcct acggcaaaca
      661 ggcggtgcgc ttctataccg agaccaagac cgtcaccagc cgctggttcg atgacactct
      721 gggcggcaat ccgccggtga gcggaccaaa tatgaccatt caactgaagt gagacctgac
      781 tcacctcaat tagcgacgac taagacgaaa agacaatgcc tccgcgttcg ccagagcccc
      841 acagtcggcc ctggcacaac aagaacaagg agccattgat gaaacgactg actgcctgtc
      901 tggccctctg ggtcggactc accgccgccg cgcaggcggc cgagccgatt accctcggcc
      961 tcagctaccc gcgcaccggc agctacaagg aagaaggact ggcacagatg cgcggagccc
     1021 tgctggccat cgacgagctg aacgcccagg gcggcgtact cggccgccca ctgcggctgt
     1081 ccagcctgga cgacgcctcg cgccccgaga aggccgcgcg caacgtcgac aagctggccg
     1141 gcgaaggcgc cgtcatgctc ttcggtggcg cctccagtgc ggccgccatc gccgccggca
     1201 agcgtgccca ggaaaagggc ctgctgtact tcggcaccct cacctactcc aacgacacca
     1261 ccggcaagga cggccaccgc tacctgttcc gcgagtgcaa cagcgcctgg atgagcgccc
     1321 gcgtgctcgg ccagtacctg gccaggcacc tgccggacaa gcgctacttc tacgtcaccg
     1381 ccgactacac ctggggcacc accaccgaga gctcgctgcg cgagaccacc ggcacccagg
     1441 acggcgcgcg caaccccggc ctcaaggtgc ccttccccgg cgcgcgcatg gccgactatc
     1501 agaacgccct gacccaggct gcgcagagcg acgccgaggt gctggttctg gtgctgttcg
     1561 gcgaagacct ggtgcgcgcc atgcgcgtgg ccgaggatct cggcctggct ggcaaggtgc
     1621 agatcgtcgc gcccaatctg acccagggca tcgtcgagca ggccggcccg ggcctgatgg
     1681 aaggcgtgct gggcacggag ccttggacct ggcgcgtgcc cgagctggaa ggcagccagg
     1741 caggccaggc cttcgtgcgc aacttcgagc aacgctacga ggtctatccc tccagcgccg
     1801 cggcctcggc ctacagcatc gtcctacagt gggcagatgc cgccggccgc gccaggagcc
     1861 tggaaagtga agcgctgatc ggcgcgctgg aaggccaccg ctacagcctg ctcaagggcc
     1921 cgcagcaatg gcgcggcttc gatcaccaga acgtgcagac cgtctacgcg gtgaaggtga
     1981 aaacgcgggc cgagatcatg gcctcgccac gccgccagga ttacttcgag atcgtccacc
     2041 gcctggacgg agaacaggcc gcccccagcc tcgccgaatg gcaggccgag cggcgcgccg
     2101 ccggccagcc cacgacattg cagtgagagc ctatggattt tgagctgaac gaggaacaac
     2161 gcctgctggt cgatagcgcc cgcgccttcg ccgcgcggga gctggcgcct cacgccgccg
     2221 actgggaccg cgagcaccac ttcccggtgg aggtgatccg ccgcgccgcc gagcagggct
     2281 acctggccct gtatataggc gaggaagacg gcggcctggg cctgtcgcgg ctgaccagct
     2341 cgctgatctt cgaacagctc gccgccggct gcgtggccac cacggcctac ctgaccattc
     2401 acaacatggc cacctggatg ctcgccagct tcgccgacca ggcgctgaag gacacctggc
     2461 tggccggcct gaccacgggc gagctgctgg cctcctattg cctgaccgaa ccggatgccg
     2521 gttccgacgc cgcccacctg cgcacccgtg cccggcgaga gggcgacgac tacgtgctgg
     2581 acggcagcaa gtgcttcatc tccggcgccg gcagcaccga tgtgctgatc gtcatggcgc
     2641 gcaccggcga ggacggtgcc aagggcatct cctgcttcct ggtgccggcg ggtgccgagg
     2701 gcgtaaagta cgggcgcaac gaggacaaga tgggctggaa ggcgcagccg acccgcacca
     2761 tcaccttcga gggcgtgcgc atccccgccg gcaaccgcat cggccccgag ggccagggct
     2821 tcgtctacgc catgaagggc ctggacggcg gccgcctgaa catcgccagc tgctcgctcg
     2881 gcgcggccca ggcggcgctg gagcagagcc tgcgctatgt cgaggagcgc aggcagttcg
     2941 gcaaacaact cagcgagttc caggccctgc agttcaagct cgccgatatg ctcaccgacc
     3001 tcaccgccag ccggcagatg gtgcgcctgg ccgcgcacaa gctggacaac cgccatggcg
     3061 aggccagcct gtactgcgcc atggccaagc gcttcgccac cgaccactgc tttacgctgt
     3121 gcaatgaggc cctgcagctg cacggcggct acggttacct gaacgactat ccgctggagc
     3181 gctgggtgcg cgacagccgc gtacaccaga tactggaagg caccaacgag atcatgcggg
     3241 tgatcgtcgc ccgccgcctg ctggaccagg gcggcatgct cgatcgcctg ctgtagcttt
     3301 cagccccctc tccccacggg gagagggcta gggagagggg ccgtgccgct tcccccaatc
     3361 cctctcccat aaatgggcga ggggagtaat ccgacgagga cgcctatgac cacttccatc
     3421 gaagcctaca accccggcat gttcgacctg acgcacaagc tgacggtgga gaagcacggc
     3481 cacaccgcgc tgatcaccat caaccacccg ccggccaata cctgggaccg cgactcgctg
     3541 atcggcctca agcaggtgat cgagcacctc aaccgcgacg acgatatcta tgccctggtg
     3601 gtgaccggtc agggcagcaa gttcttcagc gccggcgccg acctcaacct gttcgccgac
     3661 ggcgacaagg cccgcgcccg cgagatggca cggcgcttcg gcgaggcctt cgagaccctg
     3721 cgcgactttc gtggtgtatc cattgccgcg atcaacggct acgccatggg cggcggcctg
     3781 gaatgcgcgc tggcctgcga catccgcatc gccgagcgtc aggcgcagat ggccctgccg
     3841 gaagccaccg tcggcctgct gccctgcgcc ggcggcacgc agaacctgcc gtggctggtg
     3901 ggcgaaggct gggccaagcg catgatcctc tgcggcgagc gcatcgatgc cgagaccgcc
     3961 ctgcgcatcg gcctcatcga gcaggtggtg gacagcggcg aggcccgtgg caccgccctg
     4021 ctgctggcgg ccaaggtggc gcggcagagc ccggtggcgg tgcgcaccat caagccgctg
     4081 atccagggcg cccgcgagcg cggcccgaac acctggctgg gcgacgagcg cgaacgcttc
     4141 gtcgacctgt tcgatgccga cgacacccgc gagggcgtca acgccttcct cgagaaacgc
     4201 gacgcccagt ggcgcaacaa atgactcgta gggtggagaa cgaccgcagg tcttttccac
     4261 ccatcctcca ttcggtggaa aacgctgcgc gtttttccac ggggtggcca tccacactgc
     4321 gataggcacc gcaatgaacg tgaccttcga agaacgcccc gccctgcacg gcttccgcat
     4381 cggcatcgcc agcctggatg cggagaagag cctcaatgcc ctgaccctgc cgatga
//
LOCUS       DATIHC010000014         2869 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28069, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000014 DATIHC010000000
VERSION     DATIHC010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2869
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28069"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..282)
                     /locus_tag="VLF16_00250"
     CDS             complement(<1..282)
                     /locus_tag="VLF16_00250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017674988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0030955 - potassium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HSX69333.1"
                     /translation="MTLRRTKIVATLGPASSSPEVLEQLIIAGIDVARLNFSHGTADD
                     HKARATLVRELAAKHGRHVALLGDLQGPKIRIAKFENKRIELKEGDLFRL"
     gene            428..802
                     /locus_tag="VLF16_00255"
     CDS             428..802
                     /locus_tag="VLF16_00255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003462373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSX69334.1"
                     /translation="MRTLILMLTLTSLFGCSRMALDRHLDEAYRHYDQGDCDQALLDL
                     SRAERNSRSRRYIQPEISLLRGQCLERQNLFVDAAQTYEFIVNRYPSSEYAFRARARL
                     ETLRQLGHHRTAEPAKATPASL"
     gene            859..1284
                     /locus_tag="VLF16_00260"
     CDS             859..1284
                     /locus_tag="VLF16_00260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003093901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4124 domain-containing protein"
                     /protein_id="HSX69335.1"
                     /translation="MRHLIFIALLVPGLAGAEIYRWTDAQGRVHFGEKPGGNGAEQVQ
                     VKPQVVERDEATRQREQRTQQYFDARRDERAAADARAADARAERSKECGELRNSLAQI
                     QRGGRYFTTDAAGERQYIDEADVEAARSRLSSRIAERCG"
     gene            1345..1704
                     /locus_tag="VLF16_00265"
     CDS             1345..1704
                     /locus_tag="VLF16_00265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017362687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HSX69336.1"
                     /translation="MHTQRRIERHQLPYYLKVFNRITDKPMGYIGNLSLDGLMLISQY
                     PLLVNARFDMRLKVPGRDGRIHNVDFAATCHWSREDVTPGTYDSGFSLVAPPTEYVEM
                     VDALRSYFSFHPLAASA"
     gene            complement(1734..2660)
                     /locus_tag="VLF16_00270"
     CDS             complement(1734..2660)
                     /locus_tag="VLF16_00270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011332748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX69337.1"
                     /translation="MRFTLRQLEVFVAVAKQESVSRAAESLALSQSAASTSLSELERQ
                     SDCQLFDRAGKRLSLNALGRQLLPQAVALLDQAKEIEHLLSGKTGFGLLEVGATLTVG
                     NYLATLLIGNFMQRHPECRLKLHVQNTANVVQQVAHYELDLGLIEGDCQHPDIEVQPW
                     VEDELVVFCAPRHPLAERGSATLEELGREAWILREQGSGTRLTFDQAMRHHPSQLNIR
                     LELEHTEAIKRAVESGLGIGCISRLALRDAFRRGSLVPVETPELDLTRQFYFIWHRQK
                     YQTAAMREFLELCREMTAGIRRSDEIVLPSIA"
BASE COUNT          493 a          957 c          914 g          505 t
ORIGIN      
        1 gaggcggaac aggtcgcctt ccttcagctc gatgcgcttg ttctcgaact tggcgatgcg
       61 gatcttcgga ccctgcaggt cgcccagcag cgccacatgg cgcccgtgct tggccgccag
      121 ttcgcgcacc agcgtggcgc gggccttgtg atcgtcggcg gtgccgtggg agaagttcag
      181 acgggcgacg tcgatgccgg cgatgatcag ctgctccagc acttccgggg agctgctggc
      241 ggggccgagg gtagcgacga tcttggtgcg gcgcagggtc atgcggtaac tccggttttc
      301 atggcttgcc gcgaggctac tacggtcgat cactgtagtc attgttcgcc tgcactactt
      361 gtcgtcgacg agccgctgca gaaaaccggc cattcgccga tacactgcaa cagcggagga
      421 attcaccatg cgcaccctga tcctgatgct caccctgacc agcctgttcg gctgctcccg
      481 catggcgctg gaccgccacc tggacgaggc ctaccggcac tacgaccagg gcgattgcga
      541 ccaggccctg ctcgatctgt cgcgggccga gcgcaacagc cgctcgcgcc gctatatcca
      601 gccggagatt tcgctgctgc gcggccaatg cctggaacgg cagaacctgt tcgtcgacgc
      661 ggcgcagacc tacgagttca tcgtcaatcg ctaccccagc agcgaatacg cgttccgcgc
      721 ccgggccagg ctggagacat tgcgtcagct cgggcatcat cggacggccg agccggccaa
      781 ggccacgccg gcgtcgttgt gacgccgggc tgcccattcg ggaagggcag cgccgggctc
      841 gccgcaggag ggattcgcat gcgtcatctg atcttcatcg ctctgctcgt gccaggcctg
      901 gccggcgcgg agatctatcg ctggacggac gcacagggcc gcgtccactt cggcgaaaag
      961 cccggcggca atggtgccga acaggtgcag gtgaaacccc aggtggtcga gcgcgacgag
     1021 gcgacccgtc agcgcgagca gcgtacccag cagtatttcg atgcccgtcg cgacgagcgt
     1081 gcggcggccg atgcccgcgc cgccgatgct cgtgccgagc gcagcaagga atgcggcgag
     1141 ctgcgcaaca gcctggcgca gatccagcgc ggcgggcgct acttcaccac ggacgccgcg
     1201 ggcgagcgcc agtacatcga cgaggccgac gtggaggccg cccgcagccg tctgtcatcc
     1261 cgcatcgccg agcgttgtgg ctgagggtgg tcgacccgcc gctggcaggg catactcgaa
     1321 cttcttccat agcgattggc caccatgcat acccagcgcc gcatcgaacg ccaccagctg
     1381 ccctactacc tgaaggtgtt caaccgcatc accgacaagc ccatgggcta catcggcaac
     1441 ctctcgctgg acgggctgat gctgatcagc caataccccc tgctggtcaa tgctcgcttc
     1501 gacatgcgcc tgaaggtgcc gggccgcgac ggccgcatcc acaacgtgga cttcgccgcg
     1561 acctgccact ggagccgcga ggacgtcacc cccggcacct acgactccgg gttttccctg
     1621 gtggcgccgc cgaccgaata cgtcgagatg gtcgatgccc tgcgcagcta cttcagcttt
     1681 catcccctgg ccgcctcggc ctgactgaac cccccgcctc cgctggcccg ccctcaggcg
     1741 atcgacggca gcacgatctc gtcgctgcgg cggatgcccg cggtcatctc ccggcacagc
     1801 tcgagaaact cacgcatcgc cgcggtctgg tacttctgcc ggtgccagat gaaatagaac
     1861 tggcgggtga ggtccagctc cggcgtctcc accggtacca ggctgccgcg gcggaaggcg
     1921 tcacgcaggg ccaggcgcga gatgcagccg atgccgaggc ccgactccac ggcgcgcttg
     1981 atcgcctcgg tgtgttccag ctccaggcgg atgttgagct gggaagggtg atggcgcatg
     2041 gcctggtcga aggtcaggcg cgtgcccgaa ccctgctcac gcagaatcca ggcctcgcgg
     2101 ccaagttcct ccagggtcgc gctgccgcgc tcggccagcg gatggcgcgg cgcgcagaac
     2161 accaccagct cgtcctcgac ccagggctgc acctcgatgt ccgggtgctg gcagtcgccc
     2221 tcgatcaggc ccaggtccag ctcgtagtgg gccacctgct gcaccacgtt ggcggtgttc
     2281 tgcacatgca gcttgaggcg gcattccggg tggcgctgca tgaagttgcc gatcagcagc
     2341 gtggccaggt agttgccgac ggtgagcgtg gcgcccacct cgagcaaacc gaagccggtc
     2401 ttgccgctca gcagatgctc gatttccttg gcctggtcca gcagtgccac cgcctggggc
     2461 aacagctggc ggccgagggc gttgagcgac aggcgtttgc cggcccggtc gaacagctgg
     2521 cagtcggatt gccgctccag ttcgctgagt gaggtactgg ccgccgactg cgacaacgcc
     2581 agcgattccg cggccctgga cacgctttcc tgcttagcga cggcgacgaa aacttccagt
     2641 tgtctgagtg tgaatcgcat atctatataa ccaatattgg atatcttgat aattcgctta
     2701 acagatattg tggtcgtcac tagaatggcg cgcaatgttg ccggtgcgcc tttttccgca
     2761 ttgatctggc tcaaccagag cggatgcact ttccggcatt ctgaataccg agacttttga
     2821 ggacacccgc atgagcaaca tgaactcgga acgcgtactc agtgtgcac
//
LOCUS       DATIHC010000015         2463 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18721, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000015 DATIHC010000000
VERSION     DATIHC010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2463
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18721"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..682
                     /locus_tag="VLF16_00275"
     CDS             <1..682
                     /locus_tag="VLF16_00275"
                     /EC_number="1.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008157173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HSX69338.1"
                     /translation="ERTHTKRIIFHPQMMPRIVISDPALSVGMPAFITAGTGMDAFSH
                     CLEAYCAPGFHPMADGIAVEGMRLVKGALVRAVKQPDDLDARADMLAAAAMGATAFQK
                     GLGGMHALAHPIGALYDTHHGMTNATLMPYVLKFNRSAIEERITRLAAYLGLANPGFD
                     SFLEMVLQLRAEVGVPHSLAELGLDDGKTALIAQMAVADPSAGGNPLPLTEENVGQLF
                     TNALHGRL"
     gene            827..1279
                     /locus_tag="VLF16_00280"
     CDS             827..1279
                     /locus_tag="VLF16_00280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSX69339.1"
                     /translation="MRIVQATLEHLDLLTPLFIKYREFYGELPFPDSSRKFLETRLKR
                     KESVIYLALADDEDKLLGYCQLFPSYSSLSLKRVWILNDIFVAEDARRMLVADRLLQT
                     AKQMAKETNAVRMRVATSVSNEVAQKTYESIGFREDALFKNYILELGD"
     gene            1329..2147
                     /locus_tag="VLF16_00285"
     CDS             1329..2147
                     /locus_tag="VLF16_00285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M90 family metallopeptidase"
                     /protein_id="HSX69340.1"
                     /translation="MWSFRAWRRRRILSRSPYTPEHWRETRARLPILDGLSEAEMQRL
                     FQRAVLFLHRKRLTALPGVELDEIDRLALAAQAELPLLHLTDLDWYQGFHEIVLYPDD
                     FVSPQRHRDASGIEHEWDDERSGEAWHQGPVILAWPGVQAGGGWDAYNLVIHELSHKL
                     DMLGGDANGLPPLHRDMRVQDWAQAMQAAYDGMNTVLDADPEVATAIDPYAAENPAEF
                     FAVTSEYFFTAPDLLHEAFPAVYTQLAAFYRQDPLARLQALQQSHPDYRDTTNG"
     gene            2225..>2463
                     /locus_tag="VLF16_00290"
     CDS             2225..>2463
                     /locus_tag="VLF16_00290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HSX69341.1"
                     /translation="MSYSKVPAGKDVPNDIYVAIEIPANHAPIKYEIDHDTDCLFVDR
                     FMATPMFYPANYGFIPHTLADDGDPLDVLVVTPYPV"
BASE COUNT          447 a          917 c          710 g          389 t
ORIGIN      
        1 cgagcgcacg cacaccaaac gcatcatctt ccacccacag atgatgccgc gcatcgtcat
       61 cagcgacccg gcgctgtccg tcggcatgcc ggccttcatc accgccggca ccggcatgga
      121 tgccttctcc cactgcctgg aagcctactg cgcgccgggc ttccatccca tggccgacgg
      181 catcgcggtg gagggcatgc gcctggtcaa gggcgcgctg gtcagagcgg tgaaacagcc
      241 ggacgacctc gacgcccgcg ccgacatgct cgccgccgcc gccatgggcg ccaccgcctt
      301 ccagaaaggc ctcggcggca tgcacgcgct ggcccacccg atcggcgcgc tgtacgacac
      361 tcaccacggc atgaccaacg ccacgctgat gccctacgtg ctcaagttca accgcagcgc
      421 catcgaggag cgcatcaccc gcctggcggc ctacctgggt ctggccaatc ccggcttcga
      481 cagcttcctg gaaatggtct tgcaactgcg cgccgaggtc ggcgtgccgc acagcctggc
      541 cgaactcggg ctggacgacg gcaagaccgc actgatcgcg cagatggcgg ttgccgaccc
      601 ttccgccggc ggcaacccgc tgccgctgac cgaggagaat gtcggccaac tgttcaccaa
      661 cgccctgcac ggccggctct gagccgcgcc gcgcggcgac tcgccgcctg cgctgcaatc
      721 aaacgcttgc ttggattgcg ctttccatcg gcattgggca gcatcgggat gacccggcac
      781 agcatctgca gcgccaccct cacacttcaa gacgacgagg cccgccatgc gcattgtcca
      841 agccaccctg gagcacctgg acctgctgac cccgctgttc atcaagtacc gtgagttcta
      901 tggcgagctg ccgttcccgg actcctcgcg caagttcctc gagacccgcc tcaagcgcaa
      961 ggagtcggtg atctacctgg ccctggccga tgacgaggac aagctgctcg gctactgcca
     1021 gctgttcccc agctactcct cgctgtcgct caagcgtgtg tggattctca acgacatctt
     1081 cgtcgccgag gacgcccgcc gcatgctggt cgccgaccgc ctgctgcaga ccgccaagca
     1141 gatggccaag gaaaccaacg ccgtgcgcat gcgcgtggcc accagcgtga gcaacgaggt
     1201 ggcacagaag acctacgagt ccatcggctt ccgcgaagac gccctgttca agaactacat
     1261 cctggagctg ggcgactgat atccgcgcgg gcgagccgct gctcgcccgc atcgcccgag
     1321 acatagccat gtggtccttc cgcgcctggc gccgccggcg catcctgtcc cgctcgccgt
     1381 acacccccga gcattggcgc gaaacacgcg cgcgcctgcc gatcctcgac ggcctgagcg
     1441 aggccgaaat gcagcgcctg ttccagcgcg ccgtcctgtt ccttcatcgc aagcgcctga
     1501 ccgccctgcc cggcgtcgag ctggacgaga tcgaccgcct ggcgctggcc gcccaggccg
     1561 agttgccatt gctgcacctg accgacctgg actggtatca gggtttccac gagatcgtgc
     1621 tgtacccgga cgacttcgtc agcccgcaac gccaccgcga tgccagcggc atcgaacacg
     1681 aatgggacga cgagcgcagc ggcgaggcct ggcatcaggg cccggtgatc ctcgcctggc
     1741 ccggcgtgca ggcaggaggt ggctgggacg cctataacct ggtgatccac gagctgtcgc
     1801 acaagctcga catgctgggc ggcgacgcca acggcctgcc acccctgcac cgcgacatgc
     1861 gcgtgcagga ctgggcccag gccatgcagg ccgcctacga cggaatgaac acggtgctcg
     1921 acgccgatcc cgaggtcgca accgccatcg atccctacgc ggcggagaat cccgccgagt
     1981 ttttcgccgt caccagcgaa tacttcttca ccgcgcccga cctgctgcat gaggccttcc
     2041 cggccgtgta cacccagctc gccgcctttt accgccagga cccgctcgcc cgcctgcagg
     2101 ccctgcagca aagccatccg gattaccgcg acacgaccaa cggatgaaca ggcagtcgta
     2161 gtaacgccac cggaatgtgc ctataatccg cccacttttt ttggcccacc caagggagtc
     2221 gcccatgagc tacagcaaag ttccggccgg caaagacgtg ccgaacgaca tctacgtcgc
     2281 catcgagatt ccggccaatc acgcgccgat caaatacgaa atcgatcacg acaccgactg
     2341 cctgttcgtc gatcgtttca tggccacccc gatgttctac ccggccaact acggcttcat
     2401 cccgcacacc ctggccgacg acggcgaccc cctcgacgtg ctggtcgtga ccccgtaccc
     2461 ggt
//
LOCUS       DATIHC010000016         1792 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7033, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000016 DATIHC010000000
VERSION     DATIHC010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1792
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7033"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     regulatory      complement(293..514)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     regulatory      575..823
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            918..>1792
                     /gene="cobW"
                     /locus_tag="VLF16_00295"
     CDS             918..>1792
                     /gene="cobW"
                     /locus_tag="VLF16_00295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005737828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein CobW"
                     /protein_id="HSX69342.1"
                     /translation="MQSLAKLPVTIVTGFLGAGKTTLLRHLLANAGGRRIAVIVNEFG
                     ELGIDGAILKQCSIGCTEEEANGRIFELANGCLCCTVQEEFFPVMRELVARRGELDHI
                     LIETSGLALPKPLVQAFNWPEIRTACTVDAVITVVDSPAVAAGTFAAFPDQVDAQRKQ
                     DPNLDHESPLHELFADQLASADLVVLNKTDLLDAAALAAVRTEVAEELPPAVKVIEAQ
                     GGDLPLGVLLGLNCETELHIDARRTHHDEEDEDHDHDEFDSFDLVLPEAEEARLLAAL
                     KDAVAKHGILRVKGFA"
BASE COUNT          324 a          614 c          569 g          285 t
ORIGIN      
        1 ccggcaacga aaatcagcag cgcgccgagc aggcagctgc aggcggcgat ggccaggcgt
       61 ttggacaacg ggagtgaaac ggcgacggag gacgacagcg tgcggctgga catgatgggc
      121 accttccagg gattggtgtt ccggcagaag gtcgcagcaa ggaaatggcc cgcccagggc
      181 cataaaccgg catgcgcccg cccaccgcgg gttgccaacg agcccgttcg acgtctgctg
      241 cgcgccggcc ctgcggataa cggcaggccc tggctcgcga ggcgtctcat cgggttctaa
      301 cgaagattca ggccggtctc cgggcttgcg acgcctttgc aggaaccggg tcggccttcc
      361 catgcacgag gcacagtggc attgaagacc cgtcgatcgc ttaccgttgc gggggcagcg
      421 ccggactcgc ccactccacg cggagaaggg cccaccggct tcccgtttca cctcgcgcac
      481 ggcggcgaga ggcacctgaa acagcttttc tagaacatca tgaagcccgc tgcagcgtca
      541 accgcgcggt tgaccgcctc tggggcactg cgtagccttg cgccctttcc gaggttcttc
      601 ttcgctagcc gaagaagcta agagggaaca gggtccatgc cctggctgcc cccgcaactg
      661 tgaacggacg agattcttcg aaatgccact gccctgtatg gcgggaaggt gaaggatcgg
      721 gcccggacct cttacgattt cgccagccca ggcggcgaaa tcgtaaaagg tttttgggct
      781 cacgccgtga gccaggagac ctgcctcgca aacgtttcga caaccgggcg gggtgatccg
      841 gtggtgttcg gccctcgctc gtccgcgcgt gccccgccct gcccgtcggt ccatttcacg
      901 acgcttccgg ggctgccatg caatcgctcg ccaaacttcc cgtcaccatc gtcaccggct
      961 ttctcggtgc cggtaaaacc accctgctcc gccacctgct ggccaacgcc ggcggccgcc
     1021 gcatcgcggt gatcgtcaac gaattcggcg agttgggcat cgacggcgcc atcctcaagc
     1081 agtgctccat cggctgcacc gaggaagaag ctaacggccg catctttgag ctggccaacg
     1141 gctgcctgtg ctgcaccgtg caggaagagt tcttcccggt gatgcgcgag ctggtggccc
     1201 gacgcggcga gctggaccac atccttatcg agacttcggg actcgcgttg cccaagccac
     1261 tggtacaggc cttcaactgg ccggaaatcc gcaccgcctg caccgtggat gcggtgatca
     1321 ccgtggtcga cagcccggcc gtggccgccg gcaccttcgc cgccttcccc gaccaggtgg
     1381 acgcccagcg taagcaggac cccaacctcg accacgagtc gccgctgcac gagctgttcg
     1441 ccgaccagct ggccagcgcc gacctggtgg tattgaacaa gaccgacctg ctcgacgctg
     1501 ccgccctggc ggccgtgcgc accgaagtcg ccgaggaact gccgccggcg gtcaaggtga
     1561 tcgaagccca gggcggcgac ctgccgctgg gcgtgctgct cggcctgaac tgcgagaccg
     1621 agctgcacat cgacgcccgt cgcacccacc acgacgagga agacgaggac cacgaccacg
     1681 acgagttcga ctccttcgac ctggtcctgc cggaagccga ggaagcacgc ctgctggccg
     1741 cgctgaagga cgcagtggcc aagcacggca tcctgcgcgt caagggcttc gc
//
LOCUS       DATIHC010000017         6680 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28076, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000017 DATIHC010000000
VERSION     DATIHC010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6680
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28076"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..278
                     /locus_tag="VLF16_00300"
     CDS             <1..278
                     /locus_tag="VLF16_00300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003090446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="secretin"
                     /protein_id="HSX69343.1"
                     /translation="NVNQGFYVTASVTGDMVHVSISSNNDRVNQYQPGVIDTQSTDTR
                     VSGRLGEWIPLGGVSGENSSQNSAFLRQHSTRGSNDMSMRIRVEALD"
     gene            740..2335
                     /locus_tag="VLF16_00305"
     CDS             740..2335
                     /locus_tag="VLF16_00305"
                     /EC_number="4.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004451 - isocitrate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase"
                     /protein_id="HSX69344.1"
                     /translation="MSVYQTEIKAVAALKEKYGSSWGAINPEYAARMRVQNRFKTGLD
                     IAKYTAAIMRKDMAEYDADSSKYTQSLGCWHGFIGQQKLIAIKKHLKTTDKRYLYLSG
                     WMVAALRSDFGPLPDQSMHEKTSVAALIEELYTFLRQADARELDLLFTGLDAARAAGD
                     NAKAAEIQAQIDGFQTHVVPIIADIDAGFGNAEATYLLAKKMIEAGACCIQIENQVSD
                     EKQCGHQDGKVTVPHVDFLAKINAVRYAFLELGIDDGVIVARTDSLGAGLTKQIAVTN
                     EPGDLGDQYNSFLDCDEISAADLGNGDVVINRGGKLLRPKRLPSNLFQFRKGTGEARC
                     VLDCVTSLQNGADLLWIETEKPHVGQIAAMVNEIRKVIPDAKLVYNNSPSFNWTLNFR
                     QQVFDAFSAEGKDVSAYDRAKLMSVEYDETELAQVADEKIRTFQRDGSAHAGIFHHLI
                     TLPTYHTAALSTDNLAKGYFADQGMLAYVKGVQRQELRQGIACVKHQNMAGSDIGDNH
                     KEYFAGEAALKASGKDNTMNQFH"
     gene            2471..3082
                     /locus_tag="VLF16_00310"
     CDS             2471..3082
                     /locus_tag="VLF16_00310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016492426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase catalytic domain
                     family protein"
                     /protein_id="HSX69345.1"
                     /translation="MRKLLIISLLIICPGASADDLQRLLPAHTVQAVLEQLHDDRHAH
                     FAVVDYARHSSQPRLLLFERDDLRLVASYRVAHGRGSDPDHDGYADSFSDAEGSRASS
                     LGAFRTTQVYQSEEPGHGLSMRLLGLSASNANAERRAIVLHAKDYMEEDFIRRHGVAG
                     RSHGCLVLAAADRDAVIATLRSGALIFAVDSRQQSQRYLSQRK"
     gene            3417..3830
                     /locus_tag="VLF16_00315"
     CDS             3417..3830
                     /locus_tag="VLF16_00315"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020305710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HSX69346.1"
                     /translation="MPDAVTTMSHNWAFAVFLLGVFGLIAFMLGLSSLLGSKAWGRSK
                     NDPFESGMLPVGNARLRFSAKFYLVAMLFVIFDVEALFLFAWAVSVRESGWAGLIEAT
                     VFIAILLAGLVYLWRIGALDWAPEGRRNRQAKLKQ"
     gene            3841..4518
                     /locus_tag="VLF16_00320"
     CDS             3841..4518
                     /locus_tag="VLF16_00320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HSX69347.1"
                     /translation="MQYKLTRIDPDAPNEQYPIGQRETVADPLLEDEVHKNIFMGKLE
                     DVLNGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMV
                     IAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCANSGGMYDIYSVVQGVDKFLPVDVYI
                     PGCPPRPEAFLQGLMLLQESIGQERRPLSWVVGDQGIYRAEMPSQKEQRREQRIAVTN
                     LRSPDEV"
     gene            4574..6355
                     /gene="nuoC"
                     /locus_tag="VLF16_00325"
     CDS             4574..6355
                     /gene="nuoC"
                     /locus_tag="VLF16_00325"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030964 - NADH dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C/D"
                     /protein_id="HSX69348.1"
                     /translation="MTADSILSVPPYKADDQDVVVELNSRFGAETFTVQSTRTGMPVL
                     WVARDRLINVLTFLRNLPRPYVMLYDLHGVDERLRTQRRGLPGADFTVFYHLMSIERN
                     SDVMIKVALKEGDLNAPTVTGIWPNANWYEREVWDLYGITFQGHPHLTRIMMPPTWEG
                     HPLRKDYPARATEFDPFSLTLAKQQLEEEAARFKPEDWGMKRQGEHEDYMFLNLGPNH
                     PSAHGAFRIILQLDGEEIIDCVPDIGYHHRGAEKMAERQSWHSYIPYTDRIDYLGGVM
                     NNLPYVLAVEKLAGIKVPDRVDFIRVMLAEFFRITSHLLFLGTYIQDVGAMTPVFFTF
                     TDRQRAYKVIEAITGFRLHPAWYRIGGVAHDLPRGWDKLVKEFVDWLPKRLDEYTKAA
                     LKNSILIGRTKGVAQYTTKEALEWGTTGAGLRSTGLDFDLRKARPYSGYEHFEFEVPL
                     AHNGDAYDRCMVRVEEMRQSIRIIDQCLRNMPEGPYKADHPLTTPPPKERTLQHIETL
                     ITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSYPHLQQIP
                     SVIRGSMIADLIAYLGSIDFVMADVDR"
     gene            6360..>6680
                     /gene="nuoE"
                     /locus_tag="VLF16_00330"
     CDS             6360..>6680
                     /gene="nuoE"
                     /locus_tag="VLF16_00330"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HSX69349.1"
                     /translation="MSQADLIQTDRFELSQAEYDAIEHEMHHYEDPRAASIEALKIVQ
                     KQRGWVPDGAIYAIADILGIPASDVEGVATFYSQIFRVPVGRHVIRVCDSMTCFIGGH
                     ESILD"
BASE COUNT         1358 a         2276 c         1875 g         1171 t
ORIGIN      
        1 gcaacgtcaa ccagggcttc tacgtcaccg ccagcgtcac cggcgacatg gtccacgtca
       61 gcatcagcag caacaacgac cgggtgaacc agtaccagcc gggtgtcatc gacacccaga
      121 gcaccgatac ccgggtcagc ggccggctcg gagaatggat tccgctcggc ggcgtcagcg
      181 gcgaaaacag cagccagaac tcggcgttcc tgcgccagca ctccacccgc ggcagcaacg
      241 acatgagcat gcgcatccgc gtcgaggccc tcgactaagg tctggccctc gaccatgtag
      301 tcgccttaaa aaagcactac aaaacgattg acgaacgccc gtttgaaagc gcatgatggc
      361 gccgctcccg ctagccaggg gtcctgattc agggcctccg gatcgcaccg acccaccgtc
      421 gggacgatca gtgtcctacc agcccacaag gcagttcgac gaggttgcga ctggaacgag
      481 gttgtcctga gggacgggga agcgtttagc cgtatcagcc ggatctgaaa gccattcagc
      541 gtcacccaac ggcatccacg agccagtcgg tgacacatca catcggccca gttccactgt
      601 tcgtctcgtc acccctcctc gcggtacatc ctcgcctcgg tcgaatcctc gacgtcccag
      661 cggtagcatc ccacttcgcg acctgtcagc aggtttgtgg gcagtcggtg ctcaacacac
      721 actttttgaa ggattgacca tgtccgttta ccagaccgag atcaaggccg ttgccgccct
      781 gaaagagaaa tacggcagca gctggggcgc catcaacccc gagtacgccg ctcgcatgcg
      841 cgttcagaac cgcttcaaga ccggcctgga catcgccaag tacaccgcgg ccatcatgcg
      901 caaagacatg gccgagtacg atgccgactc ctccaagtac acccagtccc tgggttgctg
      961 gcatggcttc atcggtcagc agaagctgat cgccatcaag aagcacctga agaccaccga
     1021 caagcgctac ctgtacctgt ccggctggat ggtcgccgcc ctgcgttccg acttcggccc
     1081 gctgccggac cagtccatgc acgagaagac ttccgttgcc gctctgatcg aagagctgta
     1141 caccttcctg cgccaggccg atgcccgcga actggacctg ctgttcaccg gcctcgacgc
     1201 tgcccgcgcc gccggcgaca acgccaaggc cgctgaaatc caggctcaga tcgacggctt
     1261 ccagacccac gtcgtaccga tcatcgccga catcgacgcc ggtttcggta acgccgaagc
     1321 cacctacctg ctggccaaga agatgatcga agccggtgcc tgctgcatcc agatcgagaa
     1381 ccaggtttcc gacgagaagc agtgcggcca ccaagacggt aaagtcaccg ttccgcacgt
     1441 tgacttcctg gccaagatca acgccgttcg ctacgccttc ctggaactgg gcatcgacga
     1501 cggcgtgatc gtcgctcgta ccgactccct gggcgccggc ctgaccaagc agatcgccgt
     1561 gaccaacgag ccgggcgacc tgggcgacca gtacaacagc ttcctggatt gcgacgaaat
     1621 ctccgctgcc gacctgggca acggcgacgt cgtgatcaac cgcggtggca agctgctgcg
     1681 tccgaagcgc ctgccgtcca acctgttcca gttccgcaag ggcaccggcg aagcacgctg
     1741 cgtgctggac tgcgtcacct cgctgcagaa cggcgccgac ctgctgtgga tcgaaaccga
     1801 gaagccgcac gttggccaga tcgccgccat ggttaacgag atccgcaagg tgatcccgga
     1861 cgccaagctg gtctacaaca acagcccgtc cttcaactgg accctgaact tccgtcagca
     1921 agtgttcgac gcgttcagcg ccgaaggcaa agacgtctcc gcctacgacc gcgccaagct
     1981 gatgagcgtc gagtacgacg agaccgaact ggcccaggtt gccgacgaga agatccgtac
     2041 cttccagcgc gacggttcgg ctcacgccgg catcttccac cacctgatca ccctgccgac
     2101 ctaccacacc gccgctctgt cgaccgacaa cctggccaaa ggctacttcg ccgaccaggg
     2161 catgctggcc tacgtgaaag gcgttcagcg tcaggaactg cgtcagggca tcgcctgcgt
     2221 caagcaccag aacatggctg gttccgacat cggcgacaac cacaaagagt acttcgctgg
     2281 cgaagccgct ctgaaggcca gtggtaaaga caacaccatg aaccagttcc actgatagga
     2341 accggctccg cggcttagcc gcaggtgtta gggaagcccc agcagcgatg ccggggcttc
     2401 ttcgtttccg ccccttgcca gaaccctctg cacggcgtaa caagagcgca cccgatccct
     2461 ggattcgctc atgcgcaaac tcctgatcat cagcctgctc atcatctgcc ccggcgccag
     2521 cgccgatgac ctgcaacggc tgctgcccgc acataccgtg caggcggtcc tcgagcagct
     2581 tcatgacgat cgccatgcgc atttcgccgt cgtcgattac gcccgccatt ccagtcagcc
     2641 acgcttgctg ctgttcgaac gcgatgacct gcgtctggtc gccagctacc gggtcgccca
     2701 tggccgcggc tccgacccgg accacgacgg ttacgccgac agcttctccg atgccgaggg
     2761 cagccgcgcc agctcgctcg gcgccttccg aaccacccag gtgtaccaga gcgaggagcc
     2821 gggccacggc ttgtcgatgc gcctgctcgg cctcagcgcc agcaacgcca atgcggagcg
     2881 ccgcgctatc gtgctgcacg ccaaggatta catggaggag gatttcatcc gtcgccacgg
     2941 cgtggctggg cgcagccatg gctgcctggt gctggccgcg gcggaccgtg acgcggtgat
     3001 cgccacgttg cgcagcggcg cactgatctt cgccgtcgac tcccgccaac aatcgcagcg
     3061 ctatttgagc cagcgtaaat aaaagttgat cggaaataac aacaatgcgc tccgctcacg
     3121 catcaataag cggctccgct gtaaacaatt accgacagac tctttcagaa acgcgtcatt
     3181 gccgctgcga atggccatag gaccaaagca ctaagtctgc ccaaaggcct cggcctacct
     3241 gcatttgcag cgatcggcaa acaaatagag cgcaacggcc gttcattttt ttattcggaa
     3301 aaatttactt ggtgcgccaa gcgcgcataa aattgccgcc actactttgc agggcaatcc
     3361 catcggcttg ctctaccatt attaaaaagc cgccccttta cccaaggagt cccggcatgc
     3421 ctgatgcggt aacgaccatg tcccacaact gggccttcgc tgtattcctg ctcggagtct
     3481 tcgggctcat cgctttcatg ctcggtctgt ccagcctgct gggtagcaag gcctggggcc
     3541 gcagcaagaa cgatccgttc gagtcgggca tgctgcccgt cggcaatgcc cgtctgcgct
     3601 tttccgcaaa attctatctg gtcgcgatgc tcttcgtgat cttcgacgtt gaagccctct
     3661 ttctcttcgc ttgggctgtc tcggtacgcg aaagcggctg ggccggcctg atcgaagcta
     3721 cagttttcat agcaattctg ttggctggtc ttgtctatct ttggcgtata ggcgcgctcg
     3781 actgggcgcc cgaaggccgt cgcaatcggc aggcgaagct aaaacaatga ggctttggcg
     3841 atgcaataca aacttactcg gatcgatccg gatgctccca acgagcagta tccgatcggc
     3901 cagcgggaga ccgtagccga tccactgcta gaggatgagg tccacaagaa catcttcatg
     3961 ggtaagctcg aagatgttct caacggtgcg gtgaactggg gtcgcaagaa ctccctgtgg
     4021 ccgtacaact tcggtctgtc ctgctgctac gtggaaatga ccacggcctt cactgcgccc
     4081 cacgacatcg cccgcttcgg tgcggaagtg atccgtgcat caccgcgcca ggccgacttc
     4141 atggtcatcg ccggcacctg cttcatcaag atggccccgg tcatccagcg cctctatgag
     4201 cagatgctgg agcccaagtg ggtcatttcc atggggtcgt gcgccaactc cggcggcatg
     4261 tacgacatct actcggtggt ccagggtgtc gacaaattcc ttcccgtgga cgtctatatt
     4321 cccggctgcc cgccccgccc cgaggcgttc ctgcaaggcc tgatgctgct gcaggaatcc
     4381 atcggccagg agcgtcgccc gctatcctgg gttgttggcg accaaggcat ctaccgtgcc
     4441 gaaatgcctt cgcagaagga gcagcgccgc gagcaacgca tcgctgtgac caacctgcgc
     4501 agccccgacg aagtgtgaac cggcgttccg ccccgttcac tgacgccgta taccgccgat
     4561 agcgaccgag accatgactg cagacagcat tctgtccgtt ccaccgtaca aggccgatga
     4621 ccaggacgtg gtcgtcgaac tgaattcccg ctttggtgcc gagaccttca ccgtccagag
     4681 cacccgcacc ggcatgccgg tgctgtgggt cgcccgtgat cgcctgatca acgtgttgac
     4741 cttcctgcgc aacctgccgc gcccctacgt catgctgtat gacctgcatg gcgtggacga
     4801 gcgcctgcgc acccagcgcc gcggcctgcc gggcgccgac ttcaccgtgt tctatcacct
     4861 gatgtcgatc gagcgtaaca gcgacgtgat gatcaaggtc gcgctcaagg aaggcgacct
     4921 gaacgcaccg accgtcaccg gcatctggcc caacgccaac tggtacgagc gcgaggtctg
     4981 ggacctgtac ggcatcacct tccagggcca cccgcacctg acccgcatca tgatgccgcc
     5041 gacctgggaa ggtcacccgc tgcgcaagga ctacccggcg cgcgccaccg agttcgatcc
     5101 gttcagcctg accctggcca agcagcagct ggaagaagaa gccgcgcgct tcaagccgga
     5161 agactggggc atgaagcgcc agggcgagca cgaggactac atgttcctca acctcggccc
     5221 gaaccacccg tccgcccacg gtgcgttccg catcatcctg cagctggacg gcgaagagat
     5281 catcgactgc gtgccggaca tcggttacca ccaccgtggc gccgagaaga tggccgagcg
     5341 ccagtcctgg cacagctaca tcccctatac cgaccgcatc gactacctcg gcggggtgat
     5401 gaacaacctg ccctacgtgc tggccgtcga gaagctggcc ggcatcaagg tgccggaccg
     5461 cgtcgacttc atccgagtga tgctggccga gttcttccgc atcaccagcc acctgctgtt
     5521 cctggggacc tacatccagg acgtcggcgc catgacgccg gtgttcttca ccttcaccga
     5581 ccgccagcgc gcctacaagg tgattgaggc catcaccggc ttccgtctgc atccggcctg
     5641 gtaccgcatc ggcggtgtcg cccacgacct gccgcgcggc tgggacaagc tggtcaagga
     5701 gttcgtcgac tggctgccca agcgcctcga cgagtacacc aaggccgcat tgaagaacag
     5761 catcctcatc ggccgtacca agggcgtcgc ccagtacacc accaaggaag cgctggaatg
     5821 gggtaccacc ggtgccggcc tgcgctccac cggcctggac ttcgacctgc gcaaggcgcg
     5881 cccgtactcc ggctacgagc acttcgagtt cgaagtgccg ctggcccaca acggcgacgc
     5941 ctatgaccgc tgtatggtcc gcgtcgagga gatgcgccag agcatccgca tcatcgacca
     6001 gtgcctgcgc aacatgccgg aaggcccgta caaggcggat cacccgctga ccacgccgcc
     6061 gccgaaagag cgcaccctgc agcacatcga gaccctgatc acccacttcc tgcaagtctc
     6121 ctggggcccg gtcatgccgg ccaacgagag cttccagatg atcgaggcga ccaagggcat
     6181 caacagctac tacctgacca gcgacggcag caccatgagc taccgcacgc gcatccggac
     6241 gcccagctat ccgcacctgc agcagatccc ctcggtgatc cgcggcagca tgatcgcgga
     6301 cctgatcgcc tacctgggga gcatcgattt cgttatggcc gacgtggacc gttaatcaca
     6361 tgagccaggc agacctgatc caaaccgacc gcttcgaact cagccaggcc gagtacgacg
     6421 ccatcgaaca cgaaatgcac cactacgagg acccgcgcgc ggcgtccatc gaagccctga
     6481 aaatcgtgca gaagcagcgt ggctgggtgc cggacggcgc catctacgcc atcgccgaca
     6541 tcctcggcat ccccgccagc gacgtcgagg gcgtggccac cttctacagc cagatcttcc
     6601 gcgtgccggt cggccgccac gtgatccgcg tgtgcgacag catgacctgc ttcatcggcg
     6661 ggcatgaatc gatcctggat
//
LOCUS       DATIHC010000018         2310 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7037, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000018 DATIHC010000000
VERSION     DATIHC010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2310)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2310)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2310
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7037"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..923
                     /gene="ampC"
                     /locus_tag="VLF16_00335"
     CDS             <1..923
                     /gene="ampC"
                     /locus_tag="VLF16_00335"
                     /EC_number="3.5.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017360736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0008800 - beta-lactamase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class C beta-lactamase"
                     /protein_id="HSX69350.1"
                     /translation="EHTLFELGSVSKLFTATLGAYAQAEGKLRLSDKASQHLPALRGG
                     AFEQISLLDLATYTPGGLPLQFPDAVHNERQMLDYYRAWQPAYPAGSQRLYSNPSIGL
                     FGYLAAASLGVPFEQALERRLFPQLGMTESHVRVPADQMDRYAWGYREEKAIRVQPGA
                     LDAEAYGVKSTAADMLRFVEANLDPSPLPAPLRQAIDTTHQGYYQVGDMTQGLGWERY
                     AYPITLQRLQDGNSSQMALEPHAVARFAQPKTAEGDLLLNKTGSTNGFGAYVVLLPAR
                     ATGLVILANRNYPNAERVRIALQILSALER"
     gene            1279..1935
                     /gene="paoA"
                     /locus_tag="VLF16_00340"
     CDS             1279..1935
                     /gene="paoA"
                     /locus_tag="VLF16_00340"
                     /EC_number="1.2.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014821604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0047770 - carboxylate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase iron-sulfur subunit PaoA"
                     /protein_id="HSX69351.1"
                     /translation="MSESGDDNGYTRRDILSLSRTLLVLGATPAAALANEPAQEDARP
                     MRRIETSRVRLRVNGKAHELELDNRTSLLDALREHLHLTGSKKGCDHGQCGACTLIVD
                     GRRINGCLTLAVMHQDAEITTIEGLGTPEQLHPMQAAFVRHDGYQCGYCTPGQICSAV
                     AVLDEVQRGIPSHVSDDLEGAPQLSDAELRERMSGNICRCGAYSNIIDAINDVAGKRA
                     "
     gene            1932..>2310
                     /locus_tag="VLF16_00345"
     CDS             1932..>2310
                     /locus_tag="VLF16_00345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000643333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD binding domain-containing protein"
                     /protein_id="HSX69352.1"
                     /translation="MKPFSYERARTPGEAAAAAARTPGAKFIAGGTNLLDLMKLEIET
                     PLHLIDVNGLGLDRIEPTDDGGVRIGALVSNTDLAADMRIRRDYAVLSRALLAGASGQ
                     LRNKATTAGNLLQRTRCPYFYDTN"
BASE COUNT          389 a          883 c          740 g          298 t
ORIGIN      
        1 gcgagcacac cctgttcgag ctgggctcgg tgagcaagct gttcaccgcc accctcggcg
       61 cctatgccca ggccgagggc aagctgcgcc tgagcgacaa ggccagccag catctgccgg
      121 cgctgcgcgg cggcgccttc gagcagatca gcctgctcga cctggcgacc tacacgcccg
      181 gcggcctgcc gctgcagttc ccggatgccg tgcacaacga gcggcagatg ctcgactact
      241 accgcgcctg gcagccggcc taccccgccg gcagccagcg gctgtactcc aaccccagca
      301 tcggcctgtt cggctacctg gccgccgcca gcctgggcgt gcccttcgag caggcgctgg
      361 agcgccggct gttcccgcag ctgggtatga ccgagagcca tgtgcgcgtg ccggcggacc
      421 agatggaccg ctacgcctgg ggctatcgcg aggagaaggc gatccgcgtg caaccgggcg
      481 cgctggatgc ggaggcctac ggggtgaagt ccacggccgc cgacatgctg cgcttcgtcg
      541 aggccaacct cgatccgtcg ccgctgccgg ccccgctgcg ccaggccatc gacaccaccc
      601 accagggcta ctaccaggtc ggcgacatga cccagggcct gggctgggag cgttatgcgt
      661 accccatcac cctgcaacgc ctgcaggacg gcaactcctc gcagatggcg ctggagccac
      721 acgcggtcgc acgcttcgcc cagccaaaga cggccgaagg cgacctgctg ctgaacaaga
      781 ccggctcgac caacggcttc ggcgcctacg tggtgctgct gccggcccgc gccaccggcc
      841 tggtgatcct ggccaaccgc aactacccga acgccgagcg ggtgcgcatc gccctgcaga
      901 ttctctccgc actggagcgc tgaggccgta gggaaggttc gaccggactc ggcggaggtc
      961 ggccgacaga gcggtgaagg cgtccaccct ggcctcgggc tggccaggct gcacggggca
     1021 cgcatgccgc gcgccctcga ccaccctgcc cggctgtcat ccttgcccga tgcccagccg
     1081 gcgggcagcc gatggagtgt agccggccat ccgccggagg cgccgcgaca tagggtcgct
     1141 ggcactgcgc gccgcccctc gccatcggcc gctcggcata tcgctgcaac ttgccgcgct
     1201 ctggggcagt cggaacctgg acaccgcagc gcccgggcaa tccgggccgc ctacagtccg
     1261 cagcccgagg agacccgcat gagcgaatcc ggtgacgaca acggctacac gcgtcgggac
     1321 atcctctcgc tgagccgaac cctgctggtg ctgggcgcca cgcccgccgc ggcgctcgcc
     1381 aacgaacccg cacaggagga cgcccgcccc atgcgccgca tcgaaacatc ccgagtccgc
     1441 ctgcgggtca acggcaaggc ccacgaactg gagctggaca accgcacctc gctgctcgac
     1501 gcgctgcgcg agcatctcca cctcactggc agcaagaagg gctgcgacca cggccagtgt
     1561 ggcgcctgca cgctgatcgt cgacggtcgc cgcatcaacg gctgcctgac gctggcggtg
     1621 atgcaccagg acgccgagat caccaccatc gaaggcctcg gcacgcccga gcagctgcac
     1681 ccgatgcagg ccgccttcgt ccgccacgac ggctaccagt gcggctactg cacgcccggg
     1741 cagatctgct ccgccgtggc ggtgctcgac gaagtgcagc gcggcatccc cagccatgtc
     1801 agcgacgacc tggagggcgc tccgcaactg agcgatgccg agctgcgcga acgcatgagc
     1861 ggcaacatct gccgctgcgg cgcctactcc aacatcatcg acgcgatcaa cgacgtggcg
     1921 gggaaacgcg catgaagccc ttctcctacg aacgcgcccg cactccgggc gaagccgccg
     1981 cggcggccgc acgcacgccc ggcgcgaagt tcatcgccgg cggcaccaac ctgctggacc
     2041 tgatgaagct cgagatcgag acgccgctgc acctgatcga tgtcaacggc ctcggcctgg
     2101 atcgcatcga gccgacggac gacggcggcg tgcgcatcgg cgcgctggtg agcaacaccg
     2161 acctggccgc cgacatgcgc attcgccgcg actacgccgt actctcccgc gccctgctcg
     2221 ccggggcctc cggccagctg cgcaacaagg cgaccaccgc cggcaacctg ctgcaacgca
     2281 cccgctgccc ctacttctac gacaccaacc
//
LOCUS       DATIHC010000019         2792 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28078, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000019 DATIHC010000000
VERSION     DATIHC010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2792
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28078"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1117
                     /locus_tag="VLF16_00350"
     CDS             <1..1117
                     /locus_tag="VLF16_00350"
                     /EC_number="2.7.7.65"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017362763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA];
                     GO_function: GO:0071111 - cyclic-guanylate-specific
                     phosphodiesterase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional diguanylate
                     cyclase/phosphodiesterase"
                     /protein_id="HSX69353.1"
                     /translation="SHSGRLGALARLGGDQFALVQADIEQPYEAAELAQSILDNLDTP
                     FALEQQEVRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKSRSRNRYQFYIASVDSE
                     MRRRRELEKELREALNRNEMHLVFQPQVDYRDHRVVGVEALLRWQHPQHGFVAPDLFI
                     PLAEQNGTIIAIGEWVLDQACRQLREWHDQGFSELRMAVNLSTVQLHHAELPRMVSNL
                     LQVYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRAGAMIAIDDFGTGYSSLSYLKS
                     LPLDKMKIDKSFVQDLLDDEDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIIAQG
                     CNEGQGYLYSKPLPARELTLYLKQARRLSNAGNPATL"
     gene            1190..1930
                     /locus_tag="VLF16_00355"
     CDS             1190..1930
                     /locus_tag="VLF16_00355"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HSX69354.1"
                     /translation="MKPALLLALSLLCGIATAAPEPCQLRVGWEEWYPLIHQQDGRLT
                     GSEYQRVRQLADGAGCRLEFVEVPWARALQLLRNGQLDMLYGASRSAERETYARFSQA
                     YRQERMVLVVSAQSSATTDLDEVSLAAWLDEPRSDGRPRRLGLIRGFHYGEALKSVLD
                     SDKGTRLEVRWDEQLQQMLALGRIDGYLVELSVARAQQAAADAAPMRLFTVGEHPREP
                     MHLMFSLGVPVQVVERFDAAIRLQRTRP"
     gene            1947..2405
                     /locus_tag="VLF16_00360"
     CDS             1947..2405
                     /locus_tag="VLF16_00360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LEA type 2 family protein"
                     /protein_id="HSX69355.1"
                     /translation="MRPLLVLLVFLLTGCASLAPRDPLRIDLVGLEPLPAQGMEMRFA
                     VVLRVQNPNDNPIDYDGLSVELEINDQPLASGVSDQRGQVPRYGGALLRVPLSISALS
                     MMRQAWAAAGYRGERGLPYELRGKLGGGLFGTARFSDSGTLDWPQPATMP"
     gene            complement(2410..>2792)
                     /locus_tag="VLF16_00365"
     CDS             complement(2410..>2792)
                     /locus_tag="VLF16_00365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003290446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HSX69356.1"
                     /translation="LAEWVGLESVMVTIWAWVRWPLAVLMLTAVVAAVYYLAPDVKQE
                     FRFITPGSVLAVVVWIAASLAFGFYAQNFADYNATYGGIGAIIVFLLYLYISSAVLLF
                     GAELNAVIEHHAHEGKELGEKSAS"
BASE COUNT          489 a          989 c          890 g          424 t
ORIGIN      
        1 cagccacagc ggccgcctcg gcgccctggc ccgcctcggc ggcgaccagt tcgccctggt
       61 ccaggccgac atcgagcagc cctacgaggc cgccgagctg gcgcagagca tcctcgacaa
      121 cctggacaca cccttcgccc tcgagcagca ggaagtccgc ctgcgcgcca ctatcggcat
      181 caccctgttc ccggaagacg gcgacagcac cgagaagctg ctgcagaaag ccgaacagac
      241 catgaccctg gccaagagcc gttcgcgcaa ccgctaccag ttctacattg ccagcgtcga
      301 cagcgagatg cgtcgccgcc gcgagttgga gaaggaactg cgcgaggcgc tcaaccgcaa
      361 cgaaatgcac ctggtgttcc agcctcaggt cgactaccgc gaccaccgcg tggtgggtgt
      421 cgaggccctg ctgcgctggc agcatccgca acacggcttc gtcgccccgg acctgttcat
      481 cccgctggcc gagcagaacg gcaccatcat cgccatcggc gaatgggtgc tggaccaggc
      541 ctgccgccag ctgcgcgaat ggcatgacca gggcttcagc gaattgcgca tggcggtcaa
      601 cctgtccacc gtgcagctgc accacgccga gctgccgcgc atggtcagca acctgctgca
      661 ggtctaccgc ctgccgccgc gcagcctcga gttggaagtc accgaaaccg gcctgatgga
      721 agatatcagc accgccgccc agcacctgct cagcctgcgc cgcgccggcg ccatgatcgc
      781 catcgacgac ttcggcaccg gctattcctc gctcagctac ctgaagagcc tgccgctgga
      841 caagatgaag atcgacaaga gcttcgtgca ggacctgctc gacgacgagg acgacgccac
      901 catcgttcgc gccatcatcc agctcggcaa gagtctgggc atgcaggtga tcgccgaggg
      961 cgtggagacc gccgagcagg aggcctacat catcgcccag ggctgcaacg agggtcaggg
     1021 ctacctgtac agcaagccgc tgccggcccg cgagctgacc ctctacctca agcaggcccg
     1081 ccgcctgagc aacgccggca atcccgcgac cctctgaccc tccgtcgctc gacgcggcgg
     1141 cggcccctgg cgcttctaga ctgccagcca ggtcactgcg atatccgtta tgaagccagc
     1201 cctcctcctc gccctctcgc tgttatgcgg aattgccacc gccgcgccgg agccttgtca
     1261 gctcagggtc ggctgggagg aatggtatcc cctgatccac cagcaggacg gccggctcac
     1321 cggcagtgaa taccagcgcg ttcggcaact cgccgacggc gccggttgcc gcctggagtt
     1381 cgtcgaggtg ccgtgggccc gggccctgca actgctcagg aacgggcaac tggatatgct
     1441 ctacggcgcc agccgcagcg ccgagcgcga aacctatgcc cgcttcagcc aggcctatcg
     1501 gcaggagcgg atggtgctgg tagtaagtgc gcagagcagc gccacgaccg acctcgacga
     1561 ggtgtcgctg gcggcctggt tggacgagcc acgcagtgac ggccggccac gccggctcgg
     1621 cctgatccgc ggcttccact atggcgaggc gctgaagtcc gttctcgaca gcgacaaggg
     1681 gacgcgcctg gaggtgcgct gggacgagca actccagcag atgctcgcgc tcggtcgtat
     1741 cgacggctac ctggtcgaac tgagcgtggc ccgtgcccag caggcggccg cagatgccgc
     1801 gccgatgcgc ctgttcacgg tcggcgagca cccacgcgag cccatgcacc tgatgttctc
     1861 cctgggcgtg ccggtgcaag tggtggaacg cttcgacgcg gccatccgtc tacagcggac
     1921 ccgcccctga tcgagaccgt cgcgccatgc gccctttact tgtcttgctt gttttcctgc
     1981 tcaccggctg tgcctccctc gccccgcgag acccgctgcg catcgatctg gtcgggctgg
     2041 agccgttgcc ggcgcagggc atggagatgc gcttcgccgt ggtcttgcgg gtgcagaatc
     2101 ccaacgacaa tcccatcgac tacgacggtc tgagcgtgga gctggagatc aacgaccagc
     2161 cgctggccag cggcgtgagc gaccagcgcg gccaggtgcc gcgttatggc ggggcgctgc
     2221 tgcgggtccc gctgagcatc tcggcgttgt cgatgatgcg ccaggcctgg gccgcggccg
     2281 gctatcgcgg ggagcgcggg ctgccctacg agctgcgcgg caagctgggt ggcgggctgt
     2341 tcggcacggc gcgcttcagc gacagcggca ccctcgactg gccgcagccg gcgacgatgc
     2401 cctgatcgat caggaggcgc tcttctcgcc gagctccttg ccctcgtggg catggtgctc
     2461 gatcaccgca ttgagctctg cgccgaacag cagcaccgcc gaagaaatgt acaggtagag
     2521 caggaacacg atgatcgcgc cgataccgcc gtacgtggcg ttgtagtcgg cgaagttctg
     2581 cgcgtagaag ccgaaggcca gggaggcggc gatccacacc accaccgcca gcaccgagcc
     2641 gggggtgatg aagcggaatt cctgcttcac atccggcgcc aggtagtaca ccgccgccac
     2701 cacggcggtc agcatcagca ccgccaacgg ccagcgcacc caggcccaga tcgtcaccat
     2761 cacgctctcc aggccgaccc attcggccag cc
//
LOCUS       DATIHC010000020         2767 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_14037, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000020 DATIHC010000000
VERSION     DATIHC010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2767)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2767)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2767
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14037"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..867
                     /locus_tag="VLF16_00370"
     CDS             <1..867
                     /locus_tag="VLF16_00370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003282875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HSX69357.1"
                     /translation="LNQQQPEQFSRNLTYYDYIGKARLEQLNTFNETLRQLANVENDI
                     ATQQAQLQQQKTALDSRRDELAAARKERQAALAKLNKQYGAGDRKLKAKQQEQIELAR
                     VLKTIEETLARQAREAEEARRLAAVQAQQARNPNSRPLPLGPSVSSGAGFGGPFAKAK
                     GKLPWPVNGRLVARYGSPRDGDARAKWDGVLIGASAGSQVRAVHGGRVVFADWLRGAG
                     LLVILDHGNGYLSLYGHNQSLLKDAGDMVEAGEAIATVGTSGGQDTPALYFAIRQQGR
                     ASDPAQWCRAQG"
     gene            897..2207
                     /locus_tag="VLF16_00375"
     CDS             897..2207
                     /locus_tag="VLF16_00375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010222282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HSX69358.1"
                     /translation="MQQFRRLTPLALALGLLLGSPAALAAEVVEAPAAATEGKAPLPL
                     DELRTFAEVMDRIKAAYVEPVDDKTLLENAIKGMLSNLDPHSAYLEPEAFAELQESTS
                     GEFGGLGIEVGTEDGFIKVVSPIDDTPASKAGIQPGDLIVKIDGQPTKGLSLMEAVDK
                     MRGKAGSKINLTLVREGGKPFDVELTRAVIKVRSVKSQMLEDGYGLIRISQFQVNTGE
                     EVGKALGKLRKDNGKKLRGLVLDLRNNPGGVLQAAVEVSDHFLKKGLIVYTEGRIANS
                     ELRFNADPADASEGVPLVVLINGGSASASEIVAGALQDHKRGVLMGTDSFGKGSVQTV
                     LPLNNDRALKLTTALYFTPNGRSIQAQGIVPDIEVARAKLTREDGGELIKEADLAGHL
                     GNGNGGADKPSGSRKQQAPRPQDDDYQLSQALNLLKGLSVTRGD"
     gene            complement(2323..>2767)
                     /locus_tag="VLF16_00380"
     CDS             complement(2323..>2767)
                     /locus_tag="VLF16_00380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020302396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSX69359.1"
                     /translation="REKLFKWVGPIGPDDWVMLARADSSINLISLEQAKSYRVGAYKG
                     DAIDEHLRKQGLEPISSLRDQENAHKLQEGHIDLWATGDPAGRYLAKQEGITGLKTVL
                     RFDSAELYLALNPETPDEVVERLQKALDELRASGKVDQIFQSYVQ"
BASE COUNT          511 a          946 c          916 g          394 t
ORIGIN      
        1 ctcaaccagc agcagccgga acagttctcg cgcaacctca cctattacga ctatatcggc
       61 aaggcccgcc tcgagcagct caacaccttc aacgagaccc tgcgccagct ggccaacgtg
      121 gagaacgaca tcgccaccca gcaggcccag ctgcagcagc agaagaccgc gctggacagc
      181 cgccgcgacg aactggccgc ggcacgcaag gagcgccagg cggcgctggc caagctcaac
      241 aagcagtacg gcgccggcga ccgcaagctc aaagcgaagc agcaggaaca gatcgagctg
      301 gcccgtgttc tcaagaccat cgaggaaacg ctggcccgcc aggcccgcga agcagaggag
      361 gcgcgccgtc tggccgcagt gcaagcgcag caagctcgca atccgaacag ccgcccgctg
      421 ccgctggggc cgagcgtgtc cagcggagcc ggtttcggcg gtcccttcgc caaggccaag
      481 ggcaagctgc cgtggccggt caacggccgg ctcgtggccc gctacggctc accgcgcgac
      541 ggcgacgccc gagccaagtg ggacggcgtg ctgatcggcg ccagcgccgg cagccaggtg
      601 cgcgccgtgc acggtggccg ggtggtgttt gccgactggt tgcgtggcgc cgggcttctg
      661 gtcatcctcg atcacggtaa cggctacctc agcctgtatg gccacaatca gagcctgctg
      721 aaggatgccg gcgacatggt cgaggccggc gaggccatcg ccacggtcgg caccagcggc
      781 ggccaggata ccccggcact gtacttcgcc atccgccagc agggccgcgc gagcgatccg
      841 gcgcaatggt gccgcgcaca gggatgaccg ggcgcctcat cacattggga gttcacatgc
      901 agcaattccg tcgtctcacc cccctcgccc tggccctcgg cctgctgctc ggcagccccg
      961 ccgcgctggc cgccgaagtc gtcgaggccc ccgccgccgc gaccgaaggc aaggcgccgc
     1021 tgccgctgga cgagctgcgc accttcgccg aggtgatgga ccgcatcaag gccgcgtacg
     1081 tcgagccggt ggacgacaag accctgctgg agaacgccat caagggcatg ctcagcaacc
     1141 tcgacccgca ctccgcctac ctggagccgg aagccttcgc cgagctgcag gaaagcacca
     1201 gcggcgagtt cggtggcctc ggcatcgagg tcggcaccga agacggcttc atcaaggtgg
     1261 tgtcgccgat cgacgacacc cccgcctcca aggccggcat ccagccgggc gacctgatcg
     1321 tcaagatcga cggccagccg accaagggcc tgtcgctgat ggaagcggtg gacaagatgc
     1381 gcggcaaggc cggcagcaaa atcaacctga ccctggtgcg cgaaggcggc aagccgttcg
     1441 acgtcgaact gacccgcgcg gtgatcaagg tccggagcgt gaagagccag atgctcgagg
     1501 acggctacgg gctgatccgc atcagccagt tccaggtcaa taccggcgag gaagtcggca
     1561 aggccctggg caagctgcgc aaggacaacg gcaagaagct tcgcggcctg gtgctggacc
     1621 tgcgcaacaa ccctggcggc gtactgcagg cggcggtgga agtgtccgac cacttcctca
     1681 agaagggcct gatcgtctac accgagggcc gcatcgccaa ctctgagctg cgcttcaatg
     1741 ccgacccggc cgacgccagc gagggcgtac cgctggtggt gctgatcaac ggcggcagcg
     1801 cctcggcgtc ggagatcgtc gccggcgccc tgcaggacca caagcgcggc gtgctgatgg
     1861 gcactgacag cttcggcaag ggctcggtac agaccgtgct gccgctgaac aacgatcgcg
     1921 cgctgaagct gaccaccgcc ctgtacttca cccccaacgg ccgctcgatc caggcccagg
     1981 gcatcgtgcc ggacatcgag gtcgcgcggg ccaagctgac ccgcgaggac ggcggcgagc
     2041 tgatcaagga agccgacctg gccggccacc tgggcaacgg caacggcggt gcggacaagc
     2101 cgagcggcag caggaagcag caggccccgc gcccgcagga cgacgactat cagctgagcc
     2161 aggcgctcaa cctgctcaag ggcctgagcg tcacccgcgg cgactagtta caggcgtttg
     2221 cttgcgctgg tgcgcacggc gcaccctacg aaggcgcgtc gcatggcctt ttcgagggca
     2281 ataaaaaccc gggcaagccc gggtttttat tgcgcgcaga atttactgca cgtaactctg
     2341 gaagatctgg tcgaccttgc cgctggcgcg cagctcgtcg agggccttct gcaggcgttc
     2401 gaccacttcg tccggcgtct ccgggttcag cgccaggtac agctcggcgc tgtcgaaacg
     2461 cagcacggtc ttcaggccgg tgatgccttc ctgcttggcc aggtaacggc cggcgggatc
     2521 gccggtggcc cacaggtcga tatggccttc ctgcagcttg tgcgcgtttt cctggtcgcg
     2581 cagcgagctg atcggctcca ggccctgctt gcgcaggtgt tcgtcgatgg cgtcgccctt
     2641 gtaggcgccg acccggtagg acttggcctg ctccaggctg atcagattga tgctgctgtc
     2701 ggcacgggcc agcatgaccc agtcgtccgg accaatgggg ccgacccatt tgaacagctt
     2761 ctcgcgc
//
LOCUS       DATIHC010000021         3344 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_14038, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000021 DATIHC010000000
VERSION     DATIHC010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3344)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3344)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3344
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14038"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..895)
                     /locus_tag="VLF16_00385"
     CDS             complement(<1..895)
                     /locus_tag="VLF16_00385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69360.1"
                     /translation="MTREQEVPHWLQELRLAYESGAHGQFVLYGNVADRFPLDGRLVS
                     LTRYLDAQLLAGFDVVFLYDPGNGLSLLRGGERFAEWPAAAQVQPWPQEPRAAVELIS
                     RYLRYRANLQALGRGDNQHVAVILRGADLVLPAGQPGDFATASLASLVRDWAAEPPFS
                     DMAFASLLLADNLNDLHPLVANNPRIDRIQVPLPDAGALRECLAQLRVDHPKAFATED
                     DGAEQALAGVGLSALVSLVKRRAHEGKVLGPRDWAEAKKELVETDSAGLVEFIESART
                     LDDYHAQDALKTWLRQDMALWQ"
     gene            complement(1013..1750)
                     /locus_tag="VLF16_00390"
     CDS             complement(1013..1750)
                     /locus_tag="VLF16_00390"
                     /inference="COORDINATES: protein motif:HMM:NF015945.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspA/IM30 family protein"
                     /protein_id="HSX69361.1"
                     /translation="MFARLANVFKGILSLFIKDLERKNPEALLELEQENLRKQIANFN
                     QGLAAHAGLAERLMSQVRKQEAEERELHARTTAHLRAGNKSAAAQNALRLQTLARELE
                     ENRRQLAQAEETYQNLTKAREVAVNAARTKIEALKGAINDMRMKTAMAEMNEMAAGMV
                     STIGGSGDTLNRLHEMVEEERTKAAGRARMARDSMDMSEVNLKEAEMDALAEFAAKEG
                     IALPGAEAAAAPAANRSMGGNPQAESQ"
     gene            complement(1990..2412)
                     /locus_tag="VLF16_00395"
     CDS             complement(1990..2412)
                     /locus_tag="VLF16_00395"
                     /inference="COORDINATES: protein motif:HMM:NF013921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HSX69362.1"
                     /translation="MVLYRRARVAGASYFFTLALADRRQDLLTRHIDLLRECFRQAQL
                     RRPFHIDTVVILPEHLHLVMSLPAGDQDYAARIGQLKVLFTRGLRAGGMAVAANAPRE
                     AGIWQPRYWGMCYVMSGTSLRTSTTSISIRSSMAWCSG"
     gene            complement(2524..>3344)
                     /locus_tag="VLF16_00400"
     CDS             complement(2524..>3344)
                     /locus_tag="VLF16_00400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014598043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding domain-containing protein"
                     /protein_id="HSX69363.1"
                     /translation="VVLLTHSHRFAGDSGIGELARRINTGDAAGTLNLLRENRADLAW
                     QAEPVQSALLERLEQGYAPYLKAARRGEPAAAFVAFNAFRALTAQREGPCGVSGLNEA
                     LESRIKRRYSLAERERWYPGRAVMVRQNDYALGLFNGDIGLCLASEYGLRVFFEGEDG
                     FRAFAPARLPSHDSAFAMTVHKSQGSEFAEVLLALPESPSPLLTRALLYTGITRAKHK
                     VEIWGLPARLAEAVNTKAERAAGLAERLGVGPQTVASEPVAPAVPSATDQLSLF"
BASE COUNT          503 a         1146 c         1131 g          564 t
ORIGIN      
        1 cctgccacag cgccatgtcc tggcgcagcc aggtcttcag cgcgtcctgg gcgtggtagt
       61 cgtcgagggt tcgggcggac tcgatgaact ccaccagccc ggcgctatcg gtttccacca
      121 gttccttctt ggcctccgcc cagtcgcgcg ggccgagcac cttgccctcg tgcgcgcggc
      181 gcttgaccag gctgaccagg gcactgaggc cgaccccggc cagcgcctgc tcggcaccgt
      241 cgtcctcggt ggcgaaggcc ttggggtgat cgacgcgcaa ctgggccagg cactcgcgca
      301 acgcgccggc atccggcagc ggcacctgga tgcggtcgat gcgcgggttg ttggccacca
      361 gcgggtgcag gtcattgaga ttgtcggcca gcagcaggct ggcgaaagcc atgtcgctga
      421 acggcggctc ggcggcccag tcacgcacca ggctggccag gctcgcggtg gcgaagtcgc
      481 ccggctggcc ggccggcagc accagatcgg cgccgcgcag gatcaccgcc acatgctggt
      541 tatcgccgcg ccccagcgcc tgcaagttgg cgcggtagcg caggtagcgg ctgatcagct
      601 ccaccgccgc ccgcggctcc tgcggccagg gctgcacctg cgccgccgcc ggccattcgg
      661 cgaagcgctc accgccgcgc agcaggctca ggccgttgcc ggggtcgtag aggaacacca
      721 catcgaagcc ggccagcagc tgcgcgtcga gataacgggt caggctgacc aggcggccgt
      781 ccagcgggaa gcggtcggcg acattgccgt acagcacgaa ctgcccatgg gcgccgctct
      841 cgtaggccag gcgcagctcc tgcagccagt ggggtacttc ctgttcccta gtcatgcgtt
      901 ctctttccac aacgactctg cgcgaggggc ccgcccaggc agggggcgaa cgagctcacc
      961 cgcatccatg gtcccgcgcc gcaaggccag gtccgtaggt gagggagggc tcttactggc
     1021 tttccgcctg aggattgccg cccatgctgc ggttggccgc gggcgcagcg gcggcttcgg
     1081 cgccgggcag cgcgatgccc tccttggcgg cgaattcggc cagggcgtcc atctcggctt
     1141 ccttgaggtt cacttcgctc atgtccatcg agtcgcgggc catgcgcgcg cggccggcgg
     1201 ccttggtgcg ctcttcctcg accatttcgt gcagacgatt gagggtgtcg ccggagccgc
     1261 cgatggtgct caccatgccg gcggccatct cgttcatctc ggccatggcg gtcttcatgc
     1321 gcatgtcgtt gatcgcgccc ttgagcgcct cgatcttggt gcgcgcggcg ttcaccgcca
     1381 cttcgcgagc cttggtcagg ttctggtagg tctcttcggc ctgggccagc tggcggcggt
     1441 tctcttccaa ctcgcgggcc agggtctgca gacgcagagc gttctgcgcg gcggccgact
     1501 tgttgccggc gcgcaggtga gcggtggtgc gggcatgcag ctcgcgctcc tcggcctcct
     1561 gcttgcgcac ctggctcatc aggcgctcgg ccaggccggc gtgggcggcc aggccctggt
     1621 tgaagttagc gatctgcttg cgcaggttct cctgctccag ctccagcagg gcctccgggt
     1681 tcttccgctc gaggtccttg atgaacaggg agaggatgcc tttgaagaca ttggcgaggc
     1741 gggcgaacat ggcgactcct tgctgtatga acgatccatc gtgcgccggc agccggggcc
     1801 ggcagggctt ggcgcattct tcgcgagcgg cggggcagat gcaaccttgc tgcgtgattg
     1861 tgcgaagcag ggttcacagc ctgcgctatt cgccaccctc acctgcccgc tcttcatcac
     1921 cacccgccca atccgcggtc aacaatccgt cccgcacata gcgatggaag ctcgaccagg
     1981 gccaatccac tacccgctgc accaggccat gcttgagcgg attgatatgg acgtagtcga
     2041 cgtgcgcagc gaagtcccgc tcatcacgta gcacataccc cagtagcgag gttgccagat
     2101 cccggcctca cgcggggcat tggcagcgac cgccatgccg cccgcccgca ggcctctggt
     2161 gaacagcacc ttgagctggc caatccgcgc cgcgtagtcc tgatcccccg caggtaggct
     2221 catcaccaga tgcaggtgct ccggcagaat caccaccgta tcgatatgaa agggccggcg
     2281 cagctgcgcc tggcgaaagc actcgcgcag cagatcgatg tggcgcgtca gcagatcctg
     2341 gcggcgatcc gccagggcca gggtgaagaa atagctggcg cccgctaccc gggcgcgcct
     2401 atagagcacc atcgcctgaa cctccttgtt cagctatgcc ccggactaaa gtccgggcta
     2461 ccgattagca cataccaccg cccggaccgt agcccggact ttagtccggg agccctgccg
     2521 acatcaaaac aaactgagct gatcggttgc cgacggcacc gcaggtgcga ccggttcact
     2581 ggcgactgtc tgcgggccga ctcccaaccg ctccgccagc cccgccgccc gctcggcctt
     2641 ggtattcacc gcctcggcga ggcgcgccgg caggccccag atttccactt tgtgtttggc
     2701 gcgggtgatg ccggtgtaga gcagcgcgcg ggtcagcagc gggctggggc tttccggcag
     2761 ggccagcagg acctcggcga actccgaacc ctggctcttg tgcacggtca tggcgaaagc
     2821 gctgtcgtgg ctgggcaggc gcgccggggc gaaggcgcgg aagccgtctt cgccctcgaa
     2881 aaagacgcgc aggccgtact ccgaagcgag gcacaggccg atatcgccgt tgaacaggcc
     2941 gagggcgtag tcgttctgcc gcaccatcac cgcgcggccg gggtaccagc gttcgcgctc
     3001 ggccagcgag tagcggcgtt tgatccgtga ttccagggcc tcgttgaggc cgctcacgcc
     3061 gcaggggccc tcgcgctggg cggtgagggc acgaaaggcg ttgaaggcga cgaaggcggc
     3121 ggccggctca ccccggcgcg cggcctttag atagggtgca tagccctgct ccaggcgttc
     3181 cagcagcgcg ctctggaccg gctcggcctg ccaggccagg tccgcacgat tttccctgag
     3241 caggttgagg gtgccggcgg catcgcccgt gttgatccgg cgcgccagct cgccgatgcc
     3301 gctgtcgccg gcgaagcggt ggctgtgggt gagcagcacc acgg
//
LOCUS       DATIHC010000022         2465 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18740, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000022 DATIHC010000000
VERSION     DATIHC010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2465)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2465)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2465
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18740"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..632
                     /gene="mtnC"
                     /locus_tag="VLF16_00405"
     CDS             <1..632
                     /gene="mtnC"
                     /locus_tag="VLF16_00405"
                     /EC_number="3.1.3.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017517262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA];
                     GO_function: GO:0016862 - intramolecular oxidoreductase
                     activity, interconverting keto- and enol-groups [Evidence
                     IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acireductone synthase"
                     /protein_id="HSX69364.1"
                     /translation="FVFDVLFPYAAEHLPQFVIEHAGEPAVVAQLEAVRAESGEGGAD
                     LGRVIEILLQWIAEDRKATPLKALQGMIWQQGYAAGQLKGHVYPDAVEALRRWHREGY
                     ALYVYSSGSVQAQKLIFGCSEAGDLSPLFSGYFDTTSGPKREAGSYRSIAEAIGLPAE
                     QILFLSDVVQELDAARLAGLQTVGVAREGGSLDGHDTVASFAVIDLDRL"
     gene            706..918
                     /locus_tag="VLF16_00410"
     CDS             706..918
                     /locus_tag="VLF16_00410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003280678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLDc N-terminal domain-containing protein"
                     /protein_id="HSX69365.1"
                     /translation="MFDRLMHLPDWLFYGVPALLYLLLTLWALSHVLGSASRRPQKIL
                     WVALLVLFPLLGLFNWMIMGPRRAAH"
     gene            complement(1096..2241)
                     /locus_tag="VLF16_00415"
     CDS             complement(1096..2241)
                     /locus_tag="VLF16_00415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013791696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase family protein"
                     /protein_id="HSX69366.1"
                     /translation="MLKRFWLWLGRLFGRLLLILVVVGALGWGFGEAYYAWKFSGPVS
                     TEEEIPKDEAAMTHGIIEDAIRIVEQHRDNTRVLRDAHAKAHGCVKAEMTVLQNLVPE
                     LRHGVLAEPGKTWQAWMRLSNGNAYPQFDSARDARGMAIKLLDVPGEKLLSSKATAGN
                     QDFVMFNNSLFFVRDVAEYKQNFAAQASGQKIRAFFPSLDPRTWEVRHLFIALKTLAP
                     APDSPVDATYSSIAPFKLGPNNIKYRVVPDPQSCPRYELPEQNTALPNFLRNALYQQL
                     SLDRVPACFALQVQRQNPDYYMPIEDTSVEWSEDISPFETVATIRVAAQDFDTREQNL
                     FCDNLSFNPWHALPEHRPIGGINRLRKAVYEAVSVYRHQRNAAPQSR"
     gene            complement(2254..>2465)
                     /locus_tag="VLF16_00420"
     CDS             complement(2254..>2465)
                     /locus_tag="VLF16_00420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016492404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69367.1"
                     /translation="TGVTGNGNRGHEFRDGCRNEGVIGRFLEPQERYALIEYLKVMGD
                     ARLESRLKPAESRPWTPGPSCQNNN"
BASE COUNT          356 a          790 c          869 g          450 t
ORIGIN      
        1 gcttcgtctt cgacgtgctg ttcccctatg ccgccgagca cctgccgcag ttcgtcatcg
       61 agcacgccgg cgagccggcc gtggtcgcgc agctggaggc ggtgcgtgcc gagagtggcg
      121 agggcggggc tgacctgggc cgggtgatcg agatcctctt gcagtggatc gccgaggacc
      181 gcaaggccac cccgctcaag gccctgcagg gcatgatctg gcagcagggc tacgccgccg
      241 gccagctcaa gggccatgtc tacccggacg cggtggaggc gctcaggcgc tggcatcggg
      301 aaggctacgc actgtacgtc tactcctccg gctcggtgca ggcgcagaag ctgatcttcg
      361 gctgttccga ggccggcgac ctgagcccgc tgttctccgg ttacttcgac accaccagcg
      421 gtcccaagcg cgaggccggc tcctatcgca gcatcgccga ggccatcggc ctgccggccg
      481 agcagatcct gttcctttcc gatgtggtgc aggagctgga cgccgcccgg ctggccggcc
      541 tgcagaccgt cggtgtggcc cgcgagggcg gcagcctgga cggtcatgac acggtggcga
      601 gctttgcggt gatcgatctg gatcggctat aaacgctccg cgaggttgaa cccgagcccg
      661 acggcgaaac cctaagaaag ggaatcgttg ccgggagaga tgccgatgtt cgatcgcctg
      721 atgcacctgc cggactggct gttctacggc gtgcccgcgc tgctctacct gctgctgacg
      781 ctgtgggccc tgtcccacgt gctgggcagc gccagccggc gtccgcagaa aatcctctgg
      841 gtggcgctgc tggtactgtt cccgctgctc ggcctgttca actggatgat catgggaccg
      901 cgccgggccg cgcactgata agcctgtagc tgccggtgcg cacggcgcac cctacccata
      961 ctccgtgggg tgcgccatgc gcaccgcttg cggcggcgcg gtgggcgtcg cttctcggca
     1021 agcttcttga gcgatcacgc ctgtccggcc gactcggtgc gcacggcaca ccctatggcc
     1081 gcgcgatcac accccctacc gggattgcgg cgcggcgttg cgctggtggc ggtacacgct
     1141 gacggcctcg tacaccgcct tgcgcaggcg gttgatgccg ccgatcggcc ggtgctccgg
     1201 cagcgcgtgc caggggttga aggagaggtt gtcgcagaac aggttctgct cgcgggtatc
     1261 gaagtcctgc gccgctacgc ggatggttgc caccgtctcg aagggcgaga tgtcttcgct
     1321 ccattccacg ctggtgtcct cgatgggcat gtagtagtcc ggattctgcc gctgcacctg
     1381 cagggcgaag caggccggca cgcggtccag cgagagctgc tggtacagcg cattgcgcag
     1441 gaaattgggc agggcggtgt tctgctccgg cagctcgtag cgcgggcagc tctgcgggtc
     1501 cggtaccacg cggtacttga tgttgttcgg gccgagcttg aacggggcga tggagctgta
     1561 ggtggcatcc accgggctgt ccggcgccgg ggccagggtc ttcagggcga tgaacaggtg
     1621 gcggacctcc caggtgcgcg ggtctaggct ggggaagaac gcccggatct tctggccgct
     1681 ggcctgggcg gcgaagttct gcttgtactc ggccacgtcg cggacgaaga acagcgagtt
     1741 gttgaacatc acgaagtcct ggttgccagc ggttgccttg ctgctgagca gcttctcgcc
     1801 gggcacgtcg agcagcttga tggccatgcc gcgggcgtcg cgggcgctgt cgaactgcgg
     1861 gtaggcgttg ccgttggaca ggcgcatcca cgcctgccag gtcttgcccg gctcggccag
     1921 tacgccgtgg cgcagctccg gcaccaggtt ctgcagcacg gtcatttcgg ccttcacgca
     1981 gccgtgggcc ttggcatggg cgtcgcgcag cacgcgggtg ttgtcgcggt gctgttcgac
     2041 gatgcggatg gcgtcctcga tgatcccatg ggtcatcgcc gcctcgtcct tgggaatctc
     2101 ctcctcggtc gacacggggc ccgagaattt ccaggcgtag tacgcctcgc cgaagcccca
     2161 gccgagggcg ccgaccacca cgagaatcaa cagcagacgg ccgaagaggc ggccgagcca
     2221 gagccagaag cgtttgagca tggcagcgaa tccttagttg ttgttctggc agctggggcc
     2281 gggcgtccag gggcggcttt cggcgggttt gagccggctc tccagccggg cgtcgcccat
     2341 caccttgagg tattcgatca gcgcgtagcg ctcctggggc tccaggaaac ggccgatcac
     2401 cccctcgttg cggcaaccgt cgcggaactc gtggccgcgg ttgccgttgc cggtcacgcc
     2461 ggtgt
//
LOCUS       DATIHC010000023         3854 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_25726, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000023 DATIHC010000000
VERSION     DATIHC010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3854)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3854)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3854
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25726"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            199..1389
                     /locus_tag="VLF16_00425"
     CDS             199..1389
                     /locus_tag="VLF16_00425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012271060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HSX69368.1"
                     /translation="MLSFYYPPDLSAGSFRASALVSALQKGGAEGLELEVITAQPSRY
                     RSFTPDAPERECSKGVTVRRVLLPAVRPGLLGQIWQFGHFALGAWRLARQQRFDMVVA
                     TSSRLMTAVLGALIATTQGARLYLDIRDIFVETLEDVFTSKIFRPAVWIFSRLERFAI
                     WRASRVNLVSPGFLPYFEARYPGRAFSLHPNGVDEEFGKPITQPLNEPGEQLRVVYAG
                     NVGDGQGLHCVVPELALRLADRAHFQIVGDGGRLAVLTERLKGLGVKNVELINPVSRK
                     VLREIYREADVLLLHLNDCRAFRRVLPSKLFEYAASGKPIWAGVAGYSAEFIANEVPN
                     AAVFHPCDVEGAIAALERLSLEEVPREEFASQFSRQRIMQEMARDVLAVLPAKTQALV
                     ESRH"
     gene            complement(1435..1510)
                     /locus_tag="VLF16_00430"
     tRNA            complement(1435..1510)
                     /locus_tag="VLF16_00430"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1475..1477),aa:Thr,seq:tgt)
     gene            complement(1843..3048)
                     /locus_tag="VLF16_00435"
     CDS             complement(1843..3048)
                     /locus_tag="VLF16_00435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015633813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HSX69369.1"
                     /translation="MILTGPALRERFDALDDFLGAHQHLWRPKPFTCRVLPWETEHPE
                     LAVWLRSRSLEQAEAEHNHPERLSAPAPFPDLARRAIELTHVGELPAHEFGPLPDRLS
                     VDVPGRKWQQIAAFAGRLQFERQPSHWLDWCAGKGHLGRLLAQGGQRLTCLEYDPQLV
                     ETGQRMSERLRIEARHLQQDVLAADASERLHAEHTPVALHACGDLHVRLLRLAGAAGC
                     AQLAVAPCCYNRIAGEHYQPLSAPALASRLQLSKDDLRLPLSETVTAGQRQRRQRDRS
                     MARRLAFDLLQREQRGVDEYLQTPSLPVSWLDKGFPTYCRDLADLKSVTLTDAIDWPA
                     LEAAGWQRLAQVRNLELIRSLFRRPLEIWLLLDRALFLGEQGYRVRLGAFCAHQLTPR
                     NLLLLAEKP"
     gene            complement(3119..3838)
                     /locus_tag="VLF16_00440"
     CDS             complement(3119..3838)
                     /locus_tag="VLF16_00440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003255750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSX69370.1"
                     /translation="MHSLTQAAQWLLPDVIYKYLPKLVEGAQLTLELVAIAVVAGLIL
                     ALPMGIARASKHWYVRALPYGYIFFFRGTPLLVQLFLIYYGLAQFDAVRQGPLWPYLR
                     DPYWCAIITMTLHTAAYIAEILRGAIQAVPPGEIEAARALGMSRAQAMLYIILPRAAR
                     IGLPAYSNEVILMLKASALASTITLLELTGMSRTIIARTYLPVEIFFAAGVFYLVIAF
                     VLVQAFKQLERWLRVDACQGR"
BASE COUNT          703 a         1055 c         1311 g          785 t
ORIGIN      
        1 gtatgagcgt agtctgcagg gactagcaca gagtttggaa ttgaggggga ctacattggg
       61 cgcatttctg aagtttccac ccacctgccc agggaaggcg tatcacttgg tttcacttcc
      121 ggcagttttt atctgttgcc ctagcttttc agaagcggca acaagtagtt tgaggtgttg
      181 atgtcgagca gggttctctt gctgagtttc tattatccgc cggatcttag tgctggctct
      241 ttccgtgcgt ccgcgttggt ttcagcgttg caaaaggggg gggcggaagg gttggagctg
      301 gaggtaatca cggcacagcc ttcgcgctat cgatccttca cccctgatgc tccggagcgt
      361 gagtgctcca aaggcgttac ggtcaggcga gtgctattgc ctgcagttcg ccccgggctg
      421 ttggggcaga tctggcagtt tgggcacttc gctttaggag cctggcggtt ggctcgccag
      481 caacgctttg acatggtcgt agcaacttca tcgcgcttga tgacagccgt gcttggggct
      541 ctgatcgcga ctacacaagg ggcgcgtttg tatttggaca tacgcgatat ttttgtagag
      601 acacttgagg atgtatttac ttcaaaaatt tttcgacccg cggtttggat attttctcga
      661 cttgagcgct ttgctatctg gcgggcttct cgtgtcaacc tggtttcgcc cgggtttctt
      721 ccctacttcg aggcccgcta cccagggagg gcattttcgc tgcatcccaa tggagtcgat
      781 gaagagttcg gaaagccgat tacccagcct ctaaatgagc ctggggagca gttgagggtt
      841 gtatacgcgg ggaatgttgg cgacggacag gggctgcact gtgttgtccc tgagctggcg
      901 ttacggctag ctgatcgcgc gcatttccaa attgttggtg atggtggtcg gctcgcagtg
      961 ctgaccgagc gattgaaggg actaggagtt aaaaatgtcg agcttattaa tcccgtgtcg
     1021 cgcaaagtgc taagagagat ctaccgcgag gccgatgtcc tgcttctgca cctgaacgac
     1081 tgccgagcct tccggcgggt gctgccctcc aagttgttcg aatatgcagc ctcaggtaag
     1141 cccatctggg ctggggtagc gggatattct gcggagttca ttgccaatga ggtgcctaat
     1201 gctgcggtat tccacccctg cgatgtcgaa ggtgccattg ccgcgctgga gcgtctgtca
     1261 ctagaggaag tcccgcgcga ggagtttgcc agtcagtttt ctaggcaacg aatcatgcag
     1321 gagatggcac gggacgtcct cgctgtgctg cccgcgaaga ctcaagcgct agttgagagc
     1381 aggcattaag caataaaaaa ggctcaccaa ggtgagcctt ttttattgct tctatggtgc
     1441 cggcaccagg agtcgaaccc gggacctact gattacaagt cagttgctct accagctgag
     1501 ctataccggc gaaggggtcg ccattatagc cattgcttct gttgtgtaaa ccagagcact
     1561 cgatctgttt gtccggccgc gatggccagg gtgggacggc agcatcgagc ggtggcggct
     1621 atcagcaggc gtttgtttat gcacaaatat gagtagggcg cgatgggtgt gcgcagattg
     1681 tgtgcgctga tccccgtact tcttgtaatg agctgttttt tatagacttt tcgccatcgg
     1741 tcaaaaaata tacaggctcc gatcatgcaa gcgtggccgg ccgtgcagca agttctgcag
     1801 aaaatgcgca cagagttatc cacagtcctt gtgggtaagc gctcagggct tctcggcgag
     1861 caggagcagg ttgcgcgggg tgagctgatg ggcgcagaag gcgcccaggc gtacgcggta
     1921 gccctgttct ccgagaaaca gggctcggtc gagcagcagc cagatttcca gcgggcgacg
     1981 gaacaggctg cggatcagtt ccaggttgcg cacttgcgcc aggcgctgcc agccggcggc
     2041 ctccagggcg ggccagtcaa tagcgtcggt aagcgttacg ctcttgagat cggccaagtc
     2101 gcgacagtag gtggggaagc ccttgtccag ccagctcacc ggtagcgagg gcgtctgcaa
     2161 atattcgtcc acgccgcgct gttcgcgctg cagcaggtcg aaggccaggc ggcgggccat
     2221 ggaccggtcg cgctggcggc gctggcgctg gccagcggtg acggtttcgg acaagggcag
     2281 gcgaaggtcg tcctttgata gctgcaggcg cgaggccagg gccggcgcgg acagcggctg
     2341 gtagtgctcg ccagcgatgc ggttgtagca gcagggtgcc accgccagct gtgcgcagcc
     2401 cgccgcgccg gccagtcgca gcaggcgcac gtgcaggtcg ccgcaggcat gcagggccac
     2461 cggcgtgtgc tcggcgtgca ggcgctcgct ggcgtcggca gccagtacat cctgttgcag
     2521 atgccgggcc tcgatacgca ggcgctcgct catgcgttgc cctgtttcca ctagctgtgg
     2581 gtcgtattcc aggcaggtca gccgctgccc gccctgggcc agcaggcggc cgagatggcc
     2641 tttgccggca caccagtcca gccagtggct cggctgtcgc tcgaactgca ggcgcccggc
     2701 gaacgcggcg atctgctgcc acttgcgtcc cggcacatcg acgctcaggc ggtcgggcag
     2761 cgggccaaac tcatgcgctg gtagctcgcc gacgtgcgtc agctcaatgg ctcgtcgcgc
     2821 cagatcgggg aatggcgccg gggccgataa gcgctcggga tgattgtgct cggcctcggc
     2881 ctgctcaagg ctgcggctgc gcagccagac ggccagctcg gggtgctcgg tttcccacgg
     2941 cagcacgcgg caggtgaagg gcttggggcg ccacaggtgc tggtgggcgc cgaggaagtc
     3001 gtcgagggca tcgaagcgtt cgcgcagggc ggggccggtg aggatcatgc gagggcttag
     3061 ggtggcggcg atgccggcat tctatccctc tcccgccgcg ggagagggat gcggcgaatc
     3121 agcggccctg gcaggcgtcg acgcgtagcc agcgctccag ctgcttgaag gcctggacca
     3181 gcacgaaggc gatgaccagg tagaacacgc ccgccgcgaa gaagatctct accggcaggt
     3241 aggtgcgcgc gatgatggtg cgcgacatgc cggtcagctc cagcaaggtg atggtgctgg
     3301 ccagggcgct ggccttgagc atcaggatca cttcgttgct gtaggccggc aggccgatgc
     3361 gtgcggcgcg tggcaggatg atgtagagca tcgcctgggc gcgtgacatg cccagcgcgc
     3421 gcgcggcctc gatctcgccg ggcggcacgg cctggatggc gccgcgcagg atctcggcga
     3481 tataggccgc ggtgtgcagg gtcatggtga tgatcgcgca ccagtacgga tcgcgcaggt
     3541 aaggccagag cgggccttgg cgcaccgcat cgaattgcgc caggccgtag tagatcagga
     3601 acagctgcac cagcagcggg gtgccgcgga agaagaagat gtaaccgtag ggcagggcgc
     3661 gcacgtacca atgcttggag gcgcgggcga tgcccatggg cagggcgaga atcagcccgg
     3721 ccaccacggc gatggcgacc agctcgaggg tcagctgggc gccttcaacc agcttgggta
     3781 gatacttgta aatgacatcc ggtaaaagcc actgcgctgc ctgggtaagc gagtggatga
     3841 catagtcata agcc
//
LOCUS       DATIHC010000024         2257 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2398, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000024 DATIHC010000000
VERSION     DATIHC010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2398"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            72..548
                     /locus_tag="VLF16_00445"
     CDS             72..548
                     /locus_tag="VLF16_00445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017677177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1289 domain-containing protein"
                     /protein_id="HSX69371.1"
                     /translation="MSNQRIKTPCVGLCSTVYGDLVCRGCKRFHHEVVNWNAYTDDEK
                     RAVWKRLEVLLVQVMQGKVEVFDPQRLRAQLEQHQVRFVPEQSEYCWAYQLIARASRF
                     INRLDAYGMALLPEFRDWPLPELREAIDREFFLLSEAHYERYIVPRFLREGMEVRV"
     gene            complement(603..1466)
                     /locus_tag="VLF16_00450"
     CDS             complement(603..1466)
                     /locus_tag="VLF16_00450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012018837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HSX69372.1"
                     /translation="MQAIRSILVVMDPQQTEGLALRRAKLIAGVTQSHLHLLVCDKKG
                     DHGAYLAEQQAVLQQEGFSASIQQAWHESYYQTVIAAQQAEGCGLVIKQHVPENPLKK
                     ALLTPDDWKLLRYCPSPVLMVKTATPWTGGIILAAVDVGNSDSEHRTLHSGIVSHGYD
                     IARLANGTLHVISAHPSPMLSAADPTFQLKESIEARYREQCKAFQAEYDVSDERLHVE
                     EGPADVLIPYTAQRLGAVVTVVGTVARTGLSGALIGNTAEVVLDALESDVLVLKPDAI
                     IAHLEELVAQR"
     gene            1619..2224
                     /gene="miaE"
                     /locus_tag="VLF16_00455"
     CDS             1619..2224
                     /gene="miaE"
                     /locus_tag="VLF16_00455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014337917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045301 -
                     tRNA-(2-methylthio-N-6-(cis-hydroxy)isopentenyl
                     adenosine)-hydroxylase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase
                     MiaE"
                     /protein_id="HSX69373.1"
                     /translation="MNLPEIPQFLACSTPDAWVTAALADQETLLIDHKNNEFKAASTA
                     MALIAKYNQALDLVNFMSRLAREELVHHEQVLRVMKKRRIEPRPVSASRYASGLRKQV
                     RNHEPQKLVDTLVVGAFIEARSCERFEALVPHLDEELGKFYGGLLKSEARHYQGYLKL
                     AYQYGEASDVERTIDRVRGAERELIESSDTEFRFHSGVPSA"
BASE COUNT          366 a          737 c          737 g          417 t
ORIGIN      
        1 catggtgacc ctgccggggc gagccgctat catgggccgc ctgtttcaca gcgcccgttt
       61 tcgctcctct catgtccaat cagcgcatca agacgccctg cgtcggcctc tgctccaccg
      121 tctacggcga cctggtgtgc cgcggctgca agcgtttcca tcatgaagtg gtgaactgga
      181 acgcctacac cgacgacgag aagcgcgccg tgtggaaacg cctggaggtg ctgctggtgc
      241 aggtgatgca gggcaaggtc gaggtgttcg acccgcagcg cctgcgggct cagctcgagc
      301 agcaccaggt gcgcttcgtg cccgaacagt ccgaatactg ctgggcctac cagttgatcg
      361 cccgcgcctc gcgcttcatc aatcgcctcg atgcctacgg catggcattg ctgccggagt
      421 tccgcgactg gccactgccg gagctgcgcg aggccatcga tcgtgaattc ttcctgctct
      481 ccgaagcgca ctacgagcgt tacatcgtgc cgcgcttcct gcgcgagggc atggaagtcc
      541 gggtctgacg caccaccatg aaaaaagccg ccctcgggcg gctttttcgt ttgcggctgg
      601 gctcagcgct gggccaccag ctcctccaga tgggcgatga tggcgtccgg cttgagcacc
      661 agcacgtcgc tttccagcgc gtccagcacc acttcggcgg tgttgccgat cagcgcgccg
      721 gacaaaccgg tgcgcgccac ggtgccgacc acggtgacca ccgcgcctag gcgctgcgcg
      781 gtgtagggaa tcagcacatc ggccgggcct tcctctacgt gcaggcgttc gtcgctgacg
      841 tcgtattcgg cctggaaggc cttgcactgc tcgcggtagc gcgcctcgat gctctccttg
      901 agctggaagg tcgggtcggc ggccgagagc atgggcgagg ggtgggcgct gatcacgtgc
      961 agggtgccat tggccaggcg ggcgatgtcg tagccgtggc tgacgatgcc cgaatgcagg
     1021 gtgcgatgct cggagtcgct gttgccgacg tccaccgcag cgagaatgat gccgccggtc
     1081 cagggcgtgg ccgtcttcac catcagcacc gggctcgggc agtagcgcag cagcttccag
     1141 tcgtcgggcg tgagcagggc cttcttcagc gggttttccg gcacgtgctg cttgatcacc
     1201 agaccgcagc cctcggcctg ctgcgcggcg atgacggtct ggtagtagct ctcatgccag
     1261 gcctgctgaa tggaggcact gaagccttcc tgctgcagaa cggcctgctg ttcggccaga
     1321 taggcgccgt gatcgccctt tttgtcgcag accagcaggt gcagatggga ctgggtgacg
     1381 ccggcgatca gcttggcgcg cctgagcgcc agaccctcgg tctgctgcgg gtccatcacc
     1441 accagaatac tgcgtatggc ttgcatgagc gtctccctga gcttggttgc ttgcactata
     1501 gaggtggcgg ctggctacgg tcttgacctg catcacggcg tcgctggccc cgcacggctt
     1561 catccgtata atggcccgcc ctcgcagccc tgccaaccgc accacctgga agaccgtctt
     1621 gaacctgcct gagattccgc agttcctcgc ctgctccact cccgacgcct gggtgaccgc
     1681 ggccctggcc gatcaggaaa ccctgctgat cgatcataag aacaacgagt tcaaggcggc
     1741 ctcgacggcc atggcgctga tcgccaagta caaccaggcg ctggacttgg tcaacttcat
     1801 gtcgcgcctg gcccgcgagg agctggtgca ccacgagcag gtgctgcgcg ttatgaagaa
     1861 gcggcgcatc gagccgcgcc ccgtgtcggc ctcgcgctac gcgtcgggcc tgcgcaagca
     1921 ggtgcgcaac cacgagccgc agaaattggt cgacacgctg gtggtgggcg cgttcatcga
     1981 ggcacgcagc tgcgagcgct tcgaggcgct ggtgccgcat ctggacgagg agctgggcaa
     2041 gttctacggc ggcctgctca agtccgaggc gcgtcattac cagggctatc tcaagctggc
     2101 ctatcagtac ggcgaggcga gcgacgtcga gcgcaccatc gaccgggtcc gcggggccga
     2161 gcgcgagctg atcgagtcat ccgacacgga gttccgcttc cacagcggcg tgccctcggc
     2221 ctgaccgctt tcctgcgggc atgaaaaagc cggactc
//
LOCUS       DATIHC010000025         2115 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_23386, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000025 DATIHC010000000
VERSION     DATIHC010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2115
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23386"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2115
                     /locus_tag="VLF16_00460"
     CDS             <1..>2115
                     /locus_tag="VLF16_00460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004352 - glutamate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0019551 - glutamate catabolic process to
                     2-oxoglutarate [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD-glutamate dehydrogenase domain-containing
                     protein"
                     /protein_id="HSX69374.1"
                     /translation="VMSFYQPLTQGAQELHCKLYHADTPLPLSDVLPILENLGLRVLG
                     EFPYKLRRADGREYWIHDFAFTTAEGVSVDIQELNETLQDAFVRIVEGAAENDGFNRL
                     VLSAAMPWRDVALLRAYARYLKQIRLGFDLGYIASTLVNHADIAKELVRLFRTRFYLA
                     RKLSAEDLEDKQQKLEQAILAALDNVAVLNEDRILRRYLDLIKATLRTNFFQNGADGQ
                     AKHYFSFKLSPRLIPEIPRPVPKYEIFVYCPRVEGVHLRFGDVARGGLRWSDREEDFR
                     TEVLGLVKAQQVKNAVIVPMGAKGGFIPRRLPLGGTRDDIQAEAIACYRIFISGLLDV
                     TDNLKEGKVVPPEGVVRHDPDDPYLVVAADKGTATFSDIANGIAQDYGFWLGDAFASG
                     GSAGYDHKGMGITAKGGWVSVQRHFRERGIDVQKDPVTVIGIGDMAGDVFGNGLLLSD
                     QLQMVAAFNHLHIFIDPNPDPARSFAERQRMFALPRSSWADYDAKLISEGGGIFLRSA
                     KSIAISPQMKARFDIAADKLAPNELINALLKAPVDLLWNGGIGTYVKSSKESHADVGD
                     KANDGLRVNGNELRAKVVGEGGNLGMTQLGRVEYGLNGGASNTDFIDNAGGVDCSDHE
                     VNIKILLGEIVAAGDMTGKQRNTLLAEMTDDVGNLVLGNNYKQTQALSLAERRARERL
                     AEYKRLMAALEAAGKLDRALEFL"
BASE COUNT          380 a          737 c          678 g          320 t
ORIGIN      
        1 ggtgatgagc ttctaccagc cgctgaccca gggcgcccag gaactgcact gcaagctgta
       61 ccacgccgac acgccgctgc cgctgtccga cgtgctgccg atcctggaga acctcggcct
      121 gcgcgtgctc ggcgagttcc cctacaagct gcgccgcgcc gacggccgcg agtactggat
      181 tcatgacttc gccttcacca ccgccgaggg cgtcagtgtc gatatccagg agctcaacga
      241 gaccttgcag gacgccttcg tgcgcatcgt cgagggcgcg gccgagaacg acggcttcaa
      301 tcgcctggtg ctgagcgccg ccatgccctg gcgcgacgtg gcgctgctgc gtgcctacgc
      361 ccgctacctc aagcagatcc gcctgggctt tgacctcggc tatatcgcgt caactttggt
      421 gaatcatgcc gacatcgcca aggagctggt gcgcctgttc cgcacccgtt tctacctggc
      481 gcgcaagctg tccgccgagg acctggagga caagcaacag aagctcgagc aggccatcct
      541 cgccgcgctg gacaacgtcg cggtgctcaa cgaggaccgc atcctgcggc gctacctgga
      601 cctgatcaag gccaccctgc gcaccaactt cttccagaac ggtgccgacg gccaggccaa
      661 gcactacttc agtttcaagc tcagcccgcg gctgatcccg gagatcccgc ggccggtgcc
      721 gaagtacgag atcttcgtct actgcccgcg cgtcgagggc gtgcacctgc gcttcggcga
      781 cgtggcccgc ggcggcctgc gttggtccga ccgcgaggaa gacttccgca ccgaggtgct
      841 gggcctggtc aaggcgcagc aggtgaaaaa cgcggtgatc gtgccaatgg gcgccaaggg
      901 cggcttcatc ccgcgtcgcc tgccgttggg cggcacgcgt gacgatatcc aggccgaggc
      961 catcgcctgc taccgcatct tcatcagcgg cctgctcgac gtcaccgaca acctcaagga
     1021 aggcaaggtg gtgccgcccg aaggcgtggt gcgccacgac ccggacgacc cctatctggt
     1081 ggtggcagcc gacaagggca ccgcgacctt ctccgacatc gccaacggca tcgcccagga
     1141 ctacggcttc tggctgggcg acgcgttcgc ctccggcggc tcggccggct acgaccacaa
     1201 gggcatgggc atcaccgcca agggcggctg ggtctcggtg cagcgccact tccgcgagcg
     1261 cggcatcgac gtgcagaagg acccggtcac cgtgatcggc atcggcgaca tggccggcga
     1321 cgtgttcggc aacggcctgc tgctgtcgga ccagctgcag atggtcgcgg ccttcaacca
     1381 cctgcacatc ttcatcgacc cgaatccgga cccggccagg agcttcgccg agcgccagcg
     1441 catgttcgcc ctgccacgct cgtcctgggc cgactatgac gcgaagctga tctccgaggg
     1501 tggcggtatc ttcctgcgca gtgccaagag catcgccatc agcccgcaga tgaaggcgcg
     1561 cttcgacatc gccgccgaca agcttgcgcc caacgagctg atcaacgcgc tgctcaaggc
     1621 gccggtcgac ctgctgtgga acggcggcat cggcacctac gtcaagtcga gcaaggagag
     1681 ccatgccgac gtcggcgaca aggccaacga cggcctgcgc gtcaacggca acgaactgcg
     1741 cgccaaggtg gtgggcgagg gcggcaacct cggcatgacc cagctcggcc gcgtcgagta
     1801 cggcctcaac ggcggtgcca gcaacaccga cttcatcgac aacgcaggcg gcgtggactg
     1861 ctccgaccac gaggtgaata tcaagatcct gctcggcgag atcgtcgcgg ccggcgacat
     1921 gaccggcaag cagcgcaaca cgctgctggc cgagatgacc gacgacgtcg gcaacctggt
     1981 gctgggcaac aactacaagc agacccaggc cctgtccctg gccgagcgcc gcgcccgcga
     2041 gcgcctggcc gagtacaagc gcctgatggc ggcgctggag gcggccggca agctggaccg
     2101 cgcgctggaa tttct
//
LOCUS       DATIHC010000026         1834 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30413, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000026 DATIHC010000000
VERSION     DATIHC010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1834
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30413"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(66..404)
                     /locus_tag="VLF16_00465"
     CDS             complement(66..404)
                     /locus_tag="VLF16_00465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015478251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HSX69375.1"
                     /translation="MLLNWSEYVPAVKKAFGALGKSHPKMLAAYQALNDAASADDALD
                     AKTRELISLAVAITTRCDGCIGVHAEAARKAGASEKEVAQALATAIALNSGAAYVYSL
                     RALEAFEQTA"
     gene            513..1406
                     /locus_tag="VLF16_00470"
     CDS             513..1406
                     /locus_tag="VLF16_00470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017520740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSX69376.1"
                     /translation="MTPLDRLIALADVQGTLDLRCQLHGSWRLDHPQLPAGEAAYHIV
                     SAGECRLQLPDGRSTALRAGQLLLLPHGSPHLLSQGEGRPGKPRQDRHGALPRVRIGR
                     GSDGLDMLCGHFHYAPASPLFAALPEMLLLDLQPDSSLGALVALLRQEADADRQGSRT
                     VIDSLSGVLFTLILRAHLDRHPGLQGALALLTDKRLARAWQAMLEDLARPWSVNELAA
                     LANQSRATFARSFAALAGTTPGAMLTRLRMDKARTLLRTSTMSLNAVALEVGYESPAA
                     FSRAFRQCHGEAPGRYRHAAN"
     gene            1443..>1834
                     /locus_tag="VLF16_00475"
     CDS             1443..>1834
                     /locus_tag="VLF16_00475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014821430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HSX69377.1"
                     /translation="MPSLLDAWRHAPTHRRVWALAAPMILSNLSVPLVALVDATVIGH
                     LPHTQQLGAVVVGGSLYAMLVGVFGILRMSATGFAAQAAGRGDGGALRQVLLQSLALA
                     GLIALLVGLLAIPLSDLALRLMQPSAQL"
BASE COUNT          224 a          685 c          631 g          294 t
ORIGIN      
        1 ctatagtcga gccgacccgc cgcttcgagc gtccgcgcgg cgaactgcga ggtgaatcgc
       61 gtccgtcacg cggtctgctc gaaggcctcc agcgcgcgca gcgaatagac gtaggcggcg
      121 ccgctgttga gggcgatcgc cgtggccagg gcctgggcca cttccttctc gctggcgcct
      181 gccttgcgcg cggcctcggc atgtacgccg atgcagccgt cgcagcgggt ggtgatggcc
      241 acggccagcg aaatcagctc gcgggtcttg gcatccaggg cgtcatcggc gctggcggcg
      301 tcgttcagcg cctggtaggc ggcgagcatc ttcggatggg acttgcccag ggcgccgaag
      361 gctttcttca cggcggggac gtattcggac cagttgagca gcatggcgtt tctcctcggg
      421 ttatggggcc tcgggggccg acgtctgcag tctcccggct ttccgcccgg cgctcgtgtc
      481 cgttacgctc gtttctttgc cccggacgct caatgacccc gctcgacaga ctcatcgccc
      541 tggccgacgt gcagggcacc ctggacctgc gctgccagct gcacggcagc tggcgcctgg
      601 accatccgca gttgccggcg ggcgaggccg cctatcacat cgtctcggcc ggcgaatgcc
      661 gcctgcagct gcccgatggc cgcagcaccg cgctgcgcgc cggccagctg ctgctgttgc
      721 cgcacggctc gccccatctg ctgagccagg gcgagggcag accgggcaag ccccgccagg
      781 atcgccacgg cgcgctgccc cgggtgcgca tcggtcgcgg ctcggacggg ctggacatgc
      841 tctgcggcca cttccattac gccccggcct cgccgctgtt cgccgccctg cccgagatgc
      901 tgctgctgga cctgcagccc gactccagcc tgggcgccct ggtggccctg ttgcgccagg
      961 aggccgatgc cgaccgccag ggctcgcgca cggtgatcga cagcctctcc ggcgtgctct
     1021 tcacgctgat cctgcgcgcc catctggatc ggcatccggg gctgcagggc gcgctggcgc
     1081 tgctgaccga caagcgcttg gccagggcct ggcaggccat gctggaagac ctcgcgcggc
     1141 cgtggagcgt gaacgagctg gccgcactgg ccaaccagtc gcgcgccacc ttcgcccgca
     1201 gcttcgccgc cctcgccggc accacgccgg gcgccatgct cacccggctg cgcatggaca
     1261 aggcccgcac cctgctgcgc acctcgacga tgagcctcaa cgccgtggcg ctggaagtgg
     1321 gctacgagtc gccggcggcg ttcagccgcg ccttccgcca gtgccacggc gaagcccccg
     1381 gccgctaccg ccacgccgcc aactagccgg cgcgtatact gcggcctagc tccggagacc
     1441 ccatgccctc actgctcgac gcctggcgcc acgcaccgac ccaccgccgg gtctgggcgc
     1501 tggccgcgcc gatgatcctg tcaaacctct cggtgccgct ggtggccctg gtggacgcca
     1561 cggtgatcgg ccatctgccg catacccagc agctcggcgc cgtggtggtc ggcggcagcc
     1621 tgtatgccat gctggtcggc gtcttcggca tcctgcgcat gagcgccacc ggcttcgccg
     1681 cccaggcggc cgggcgcggc gatggcggcg cgctgcgcca ggtgctgctg cagagcctgg
     1741 cgctggccgg cctgatcgcc ctgctggtgg ggctgctggc gattccgctg agcgacctgg
     1801 cgctgcggct gatgcagcct tcggcacagc tgga
//
LOCUS       DATIHC010000027         1738 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37398, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000027 DATIHC010000000
VERSION     DATIHC010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1738)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1738)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1738
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37398"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1597)
                     /locus_tag="VLF16_00480"
     CDS             complement(<1..1597)
                     /locus_tag="VLF16_00480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009045519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator"
                     /protein_id="HSX69378.1"
                     /translation="MIACLRPLSILCLAGLLAACAGSPSSGLGELPRTPQTSIDQLLQ
                     QAGQAEPEQAALLRLSAADLAYRQQDIGRATRILSETPKEGLKPAQQVFAATLEAELA
                     MARDKPKSALKALQHSSLERLGELPVELQIRTQLVRARALEADGQLQAAARERVFIAP
                     LLSGEAAKDNHETIWSLVSRLPQSQLTSSGDSDLDGWMSLALATKTFGTPDQQLAAIE
                     DWKTQHPQHPAAEQLPAPLVKLKELAGQPLQKIALLLPQDGQLAAVARALRDGLLAAH
                     YQAQQAGQNPPEVVLYNSSRLSSLDDFYRQAQADGVQLVVGPLEKPLVKQLSDRPQLP
                     LTTLALNYSDAGREAPAQLFQFGLAAEDEAREVARRAWADGMRSAVALVPRGEWGNRV
                     LAAFQQSWQAAGGNLIAAEHVDQPVELAQQIADLLQLRQSEARAKRLQNTLGTQLAAL
                     PSRRQDIDFIFLAATPQQAQQIKPPLAFQYAGDLPVYATSHLYSGGHNPTQYRDLEGI
                     RFCETPWLLDANDPLRQQVDRQWP"
BASE COUNT          240 a          549 c          653 g          296 t
ORIGIN      
        1 gcggccactg ccggtcgacc tgctggcgca gcggatcgtt ggcatccagc agccaggggg
       61 tttcgcagaa gcggatgcct tcgaggtcac gatactgggt tgggttatgg ccgccgctgt
      121 acagatgcga tgtggcatag accggcaggt cgccggcgta ctggaacgcc aggggcggct
      181 tgatctgctg ggcctgctgc ggggtggcgg cgagaaagat gaaatcgatg tcctggcggc
      241 gcgagggcag ggcggccagc tgggtgccca gggtgttctg caggcgcttg gcgcgcgcct
      301 cgctctggcg cagttgcagc agatcggcga tctgctgggc cagctccacc ggctggtcga
      361 cgtgctcggc ggcgatcagg ttgccgccgg cggcttgcca gctctgctgg aaggcggcga
      421 gcacgcggtt gccccattcg ccgcgcggca ccagggcgac ggcgctgcgc atgccatcgg
      481 cccaggcacg acgggcgact tcgcgggctt cgtcctcggc ggccaggccg aactggaaca
      541 gctgggccgg agcctcgcga ccggcgtcgc tatagttcag cgccagggtg gtaagcggca
      601 gttgcgggcg gtcgctgagc tgcttcacca gcggcttctc cagcgggccc accaccagtt
      661 gcacgccatc ggcctgggcc tggcggtaga agtcgtccag cgaggacagg cgcgagctgt
      721 tgtacagcac cacttccggg ggattctgcc ccgcctgctg agcctgatag tgcgcggcca
      781 ggagaccgtc gcgcagggcg cgggccaccg cggccagctg gccgtcctgc ggcagcagca
      841 gggcgatctt ctgcagcggt tgaccggcca gctccttgag tttcaccagc ggcgccggca
      901 gttgctcggc cgcaggatgc tgcgggtgct gggttttcca gtcttcgatg gcggccagtt
      961 gctggtcggg tgtgccgaac gtcttggtgg cgagggccag gctcatccag ccgtccagat
     1021 cgctgtcgcc ggagctggtc agctggctct gcggcagcct cgacaccagg ctccagatgg
     1081 tttcgtgatt atccttggcg gcctcgccgg acagcagggg ggcaatgaac acgcgctcgc
     1141 gggcggcggc ttgcagctgg ccgtcggctt ccagggcgcg ggcacggacc agctgggtgc
     1201 ggatctgcag ttccaccggc agctcgccca gacgctccag gctggagtgc tgcagcgcct
     1261 tgagtgcgct cttcggcttg tcgcgcgcca tggccagctc ggcctcgagc gtggcggcga
     1321 agacctgctg ggccggcttc aggccctctt tcggcgtttc gctgaggatg cgcgtggcgc
     1381 gaccaatgtc ctgctgccgg taggccaggt ccgccgccga gaggcgcagc agcgcggcct
     1441 gctccggttc ggcttgtccg gcctgctgca gcagctggtc gatgctggtc tggggcgtgc
     1501 ggggcagctc gcccagaccg gacgagggcg acccggcgca ggcggcgagc aggccggcga
     1561 gacagaggat ggacagcggg cgcaggcagg cgatcatcga atacgttccc ggtactgatc
     1621 agctttaagg aaggcgcgat tgtacccaag caccgccgcc catgcgatgt cgggggctcg
     1681 aaacgggcta caatgcgcgc tttccgaggt cattcgaggt gcgcctgtga gcgtttcc
//
LOCUS       DATIHC010000028         4170 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11735, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000028 DATIHC010000000
VERSION     DATIHC010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4170
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11735"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..2491)
                     /gene="treY"
                     /locus_tag="VLF16_00485"
                     /pseudo
     CDS             complement(1..2491)
                     /gene="treY"
                     /locus_tag="VLF16_00485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020307472.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0047470 - (1,4)-alpha-D-glucan
                     1-alpha-D-glucosylmutase activity [Evidence IEA];
                     GO_process: GO:0005992 - trehalose biosynthetic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="malto-oligosyltrehalose synthase"
     gene            complement(2484..>4170)
                     /gene="malQ"
                     /locus_tag="VLF16_00490"
     CDS             complement(2484..>4170)
                     /gene="malQ"
                     /locus_tag="VLF16_00490"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003246817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004134 - 4-alpha-glucanotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0005980 - glycogen catabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HSX69379.1"
                     /translation="RLTLAVAPPACRSVQDLCGKPLAWGLTAQLYGLRRHGDGGLGDT
                     RALEDLARHAANLGADALAISPVHAMFGAAPDRYSPYSPSSRLFFNVLHAAPANLLGS
                     DAVARAVAACGLQEEMARLERLDLIDWPGVTATRQRLLSQLYRDFREGDGALLGDFTA
                     FCDVGGDALLQHCRFEALHGHMLRSGQSGDWRNWPETLRDPRNPEVIRFAAEHADEVG
                     LHAFSQWLIARGLESAQTVASGSGMGIGLIADLAVGADVAGSQAWTRQDELLPEVTVG
                     APPDILNRNGQNWGVSAFSPEGLRRHGFRAFIEMLQANLAHAGGVRIDHVMGLQRLWV
                     IPQGGEPQDGAYLRYPLHDMLRLLALESHRHRALIVGEDLGTVPEGLREELARRNILG
                     MRVLLFEQQDGRFIAPRHWPRDALATTATHDLPSLKGWFAGHDIDWRLRAGHSRPEQE
                     QDDRAERRRETDALRQAMHDADLLQADRNDDAEQALQAGIAYIGSTPAPLVLLPLEDA
                     VGLDQQPNLPGPGDDHPNWRRRYELPARELLEQPATLERLELLAKVRKEAGDD"
BASE COUNT          589 a         1420 c         1544 g          617 t
ORIGIN      
        1 gcgcggcacc acggccacca ggtgcacgtc acacaggctg cgggagaagg ccagcacccg
       61 gtcggcctgt tcgccgacga cctgcagcgg gcgatagtcg ccctcggtga acagctgtgg
      121 ccgggcatgc cggatggcca gcagattggc gatcagccat tgcttgatgc gcccgtcgcg
      181 ccattgctgc aacagctcgc ccggctcttc caggccgctg agcgagtcca cccgcgcgtc
      241 gaagtccacc ggccggcggt tgtccgggtc gaccatgctg aagtcccagt attcgcagcc
      301 ctggtacaga tcgggcacgc ccggcgcgct gaggcgcagc aggcattgca ccagggaatt
      361 gagcgcgccc gccggtgcca ggctgtccac cgcggcgacc agttcccggc gcagctcgcg
      421 gccctcgggc gcggtcagca gccgctcgag gaaatcgccg caggcagcct catgctcggc
      481 attgggcgcg ctccagctgc tgttgagctt ggcctcgcgc agggccttct cttgccagcc
      541 acgcatgcgc ggcaggtagg cctgcaggcc cgcgtcgtcg tcggcgccga gttccagcgg
      601 ccagctgccg ccagtggcgc acccgctcgg cgaaccaatc ggcgcgctcg ctgatcacgg
      661 cgagccgagt gcggctgtcc tcgccacgct tgtggtcgtg ggtcgcggtg ccgagcaggc
      721 tggtgggaaa gtgctgtgcg cgttcctggc agcactggtg gaaatgtgcc ggcgggcggc
      781 tgaaatgctc ggcctcgaag cccacgtcat agcgtgacag cagcaggcca ctgcgataga
      841 acgcggtatc ttccacggcc ttggctgcca ccggcgaggt cagttgctgg aagcggccca
      901 tcacccgggc gcgcagcttg cgcgggcggc ccggcggcag ttcgaacagc gcctggccgc
      961 cgagccagcg gtccaggtga tcgagcatcg gccagtcggt ttcggccagg gtctggcgcg
     1021 caccgtccag tgcctgctgg aagatgcgct ggtcctgctc ggagcggccg caggcgctga
     1081 cgtaggtgcg gtacaccggg aagtgcacga tcagttcgac gagcgcgcgg cgaatcgagc
     1141 cgagggtcag gtcgcgggtg gcgatatcgt tgcgcgccac ctgcaacaga ccttgcgcca
     1201 cttcctccag gtcgccggcc aggttgctgc ccagcaccag gcgtctcgct tccagcactt
     1261 cctcggcgaa ctccgcggtg cggccgctga gttcgctcca cagcgcgcgc aacggctcct
     1321 cgccctgcgg gtcgtgctgc agcagcgaca cctggttcat gaactcgtag ccggtggtgc
     1381 cgtcgacgtt ccagtcaccg ggcaggtgct ccccggcgcc gaggatcttt tcgacataga
     1441 tcgggaagtg ctggccgaac atcgcctgcg ggcgcttctc cagcagcccg tcgatgcgcc
     1501 ggcgcaggcg gcggcagtag gcgcgcgggt tggccaggcc gtcgacgtgg tcgatgcgca
     1561 ggccgtcgac caggccgcgc tcgaccagct cgaagatctt ctcgtgggtc agctcgaaga
     1621 cttccggccg ctcgacgcgc aggccgccca gttcgttgat gtcgaagaag cgccgccagt
     1681 tgatgtcgtc cgccgcggtg cgccagctgg ccacccggta gtgctggcgc tcgagcaggc
     1741 gatgcaggcg ctgcaggcct tcctcgccgt cgcagcggta gcgcgccagg gcccgcggga
     1801 tggcgtcgcc ggtcacgtcc ggggagccga gccggctcag ttcggcgaac agctcgtggg
     1861 ccttctgcca ggcgtccgtc gcgccgcgca gggcgtcgaa gcggccggcc agctcgctca
     1921 gctgcggctc gtcggcgcca cgcaggatct cgccgaaact cggcggggtg atcggcaggc
     1981 gatgctcgaa gtgctgggca tagaaggcgc cacggtcgcg gtcgaagtgc aggccgatgc
     2041 tgccttcgct cagcgcctgg ccgtagtcgc agcgcaggaa cggtaccagc agctggccgg
     2101 ccagcagcgg gtcatgggag tgccactgga tgtcgaagaa cttggcgtag gggctgttct
     2161 ggccccattc cagcaggtcc agccaccagg ggttggcgtc gccgccgacg gccatgtggt
     2221 tgggcacgat atccaggatc aggccgatgc cgcgacggtg cagcgcctcg acgaaacgca
     2281 gcaggccggg ctcgccgccc agctcggggt tgatccgggt cgggtcgacc acgtcgtagc
     2341 cgtgcatcga gccggggcgg gcggtgagca atggcgaggc gtagacgtgg ctgatgccca
     2401 ggcgcgaaaa atagggcacc aggggcaccg cgtcgtccag tgtgaagccc tggtggaact
     2461 gcaggcgcag ggtgccgcgc aactcaatca tcgccggcct ccttgcgcac cttggccagc
     2521 aactccaggc gctccagggt cgccggctgc tcgagcagct cgcgagccgg cagctcgtag
     2581 cgccgccgcc agttgggatg gtcgtcgccg gggccgggca ggttgggttg ctggtccagg
     2641 cccacggcat cctcgagcgg cagcagcacc agcggcgccg gcgtgctgcc gatgtaggcg
     2701 atgcccgcct gcagcgcctg ctcggcatcg tcgttgcgat cggcctgcag caggtcggcg
     2761 tcgtgcatgg cctggcgcag cgcgtcggtc tcgcggcggc gctcggcgcg gtcgtcctgt
     2821 tcctgctcgg ggcggctgtg gccggcgcgc aggcgccagt cgatgtcgtg gccggcgaac
     2881 cagcccttga ggctgggcag gtcatgggtg gcggtggtgg ccagggcgtc gcgcggccag
     2941 tgccgcggcg cgatgaagcg tccgtcctgc tgctcgaaca gcagcacgcg catgccgagg
     3001 atattgcgcc gcgccagttc ctcacgcagc ccttcgggca cggtgccgag gtcttcgccg
     3061 acgatcagcg cacgatgacg gtgggactcc agggccagca ggcgcagcat gtcgtgcagc
     3121 gggtagcgca gataggcgcc gtcctgcggc tcgccgccct ggggaatgac ccacaggcgc
     3181 tgcaggccca tgacgtggtc aatgcgcacg ccgcccgcgt gggccaggtt ggcctgcagc
     3241 atctcgatga aggcgcggaa accgtggcgg cgcagcccct cgggcgagaa ggcggagacg
     3301 ccccagttct gcccgttgcg attgaggatg tccggcggcg cgccgaccgt cacctccggc
     3361 agcagctcgt cctggcgggt ccaggcctgg ctgccggcca cgtcggcgcc caccgccagg
     3421 tcggcgatca ggccgatgcc catgcccgag ccgctggcga ccgtctgggc gctctccagg
     3481 ccacgggcga tcagccactg gctgaaggcg tgcaagccca cctcgtcggc atgctcggcg
     3541 gcgaagcgga tgacctcggg attgcgcggg tcgcgcaggg tctccggcca gttgcgccag
     3601 tcgccggact gcccgctgcg cagcatgtgg ccgtgcaggg cctcgaagcg gcagtgctgc
     3661 agcagcgcat cgccgcccac gtcgcagaat gcggtgaagt ctccgagcag ggcgccgtcg
     3721 ccctcgcgga agtcgcggta cagctggctc agcaggcgct gacgggtggc ggtcacgccc
     3781 ggccagtcga tcaggtcgag gcgctccagc cgcgccattt cctcctgcag gccgcaggcc
     3841 gccacggcgc gggccacggc gtcgctgccc agcagattgg ctggcgcggc gtgcagcacg
     3901 ttgaagaaca gccgactgga cggcgagtag gggctgtagc ggtcgggcgc ggcgccgaac
     3961 atggcgtgca ccgggctgat ggccagcgcg tcggcgccga ggttggcggc gtgacgggcc
     4021 aggtcctcca gcgcacgggt gtcgccgagg ccgccgtcgc cgtggcggcg caggccgtag
     4081 agctgagcgg tcaggcccca ggcgaggggc ttgccacaga ggtcctgcac gctgcggcag
     4141 gccggcgggg ccaccgccag ggtcaggcgc
//
LOCUS       DATIHC010000029         3117 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_44409, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000029 DATIHC010000000
VERSION     DATIHC010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3117
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44409"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..670)
                     /locus_tag="VLF16_00495"
     CDS             complement(<1..670)
                     /locus_tag="VLF16_00495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016494040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSX69380.1"
                     /translation="MNLRRMGAIVLKELRQLRRDKLTFVMIAGVPLLELVLFGYAINM
                     DVRGIEAAVLDQANTAQSREAIAEITSSQVIEVKYRLDNPQEIDRLLREGRISAALVV
                     PSDFEARLQRRDRPPLQLVVDGSDQSVQASARQLAAYPLPGWSGAQGVEVVNFYNPER
                     LAPLNTVPGLLGVILTMTMVLFTAVALVREREHGNLELLIATPVSPWELTIGKVLPFI
                     GIGLI"
     gene            complement(667..1605)
                     /locus_tag="VLF16_00500"
     CDS             complement(667..1605)
                     /locus_tag="VLF16_00500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003455089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSX69381.1"
                     /translation="MNDTDLVIRARGLSKRFGKLTAVDNLDLSVPRAEVFGFLGPNGC
                     GKSTTIRMLCGLLQPSEGEVEVLGYQIPRDAEELKRRIGYMTQKFSLYEDLTVQENLE
                     FLAAVQGIGRRDTRERIDELLERYWLADRRKQMAGTMSGGQKQRLALAGAVLHKPDLL
                     LLDEPTSAVDPQSRREFWDSLFELAEAGTTLLVSTHYMDEAERCTRLGILDAGRLVAD
                     GSPRELMDALPGHPLLIECAQPREAQRALQGHPQVLAMAQIGATLRVLCAADGVRDDI
                     AAVLRRAGVNAELRDGEANLEDVFVAVTRKPLEATP"
     gene            complement(1592..2563)
                     /locus_tag="VLF16_00505"
     CDS             complement(1592..2563)
                     /locus_tag="VLF16_00505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016494038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HSX69382.1"
                     /translation="MYRLLRSRLLLASLLVAGLTGCDSGGEQLLGTLEWDRIGLPAET
                     SEPVLAWKVAEGDRVEAGQLLVELDPRRQDARIAQARGEVDQAAARLAELSNGARSET
                     IDSARATLARNRAELTDAERNFTRIAELHRRKMVAVAELDRARAARDQAGAATRSAEA
                     QLRELTNGTRPEQLEQAAAALDAARGNLAQLEVGREHLSLRAPRAGLVDALPFRVGDQ
                     PPAGAEVVSLLVGEAPYARLFIPASIRAGVKVGDTLRIRVEGIEQPFDGRVRNIRSEA
                     SFTPYYALTGDDASRLMYRAEVVLEGEAARQLPAGLPLQAERIDERH"
     gene            complement(2565..>3117)
                     /locus_tag="VLF16_00510"
     CDS             complement(2565..>3117)
                     /locus_tag="VLF16_00510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003455084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HSX69383.1"
                     /translation="LFAHQGIHATSLRAIAERAGVTPALLNYYFGGKDGLVDAMVEER
                     FLPLVTTAAQGLQQAGDDPLALVEAFLRDMSRNVATHPWISQLWVREILCDGGVLRER
                     LMDRIAPMVPLLLAQKFAAAQARGALNPDLDPRLLVVSLIGLTLLPYAAAPIWRGVFA
                     NPQIGDNALIAHTLALLKGAMEP"
BASE COUNT          428 a         1047 c         1173 g          469 t
ORIGIN      
        1 ggatcaggcc gatgccgatg aagggcagca ccttgccgat ggtcagctcc cagggcgata
       61 cgggcgtggc gatcagcagc tccaggttgc cgtgctcccg ttccctgacc agcgccacgg
      121 cggtgaacag caccatggtc atggtcagga tcaccccgag caggccgggc acggtgttca
      181 gcggcgccag gcgttcgggg ttgtagaagt tgaccacctc cacgccctgg gcgccgctcc
      241 agccgggcag cggataggcc gccagctgac gcgccgaggc ctgcacgctc tggtcggagc
      301 cgtccaccac cagctgcagg ggcgggcggt cacggcgctg caggcgtgcc tcgaaatcgc
      361 tcggcaccac cagcgcggca ctgatgcgcc cttcgcgcag caggcggtcg atctcctgcg
      421 ggttgtccag ccggtacttc acctcgatca cctggctgga ggtgatttcc gcgatggcct
      481 cgcgcgactg cgcggtgttg gcctggtcga gcacggcggc ctcgatgccg cgcacatcca
      541 tgttgatggc gtagccgaac agcaccagtt ccagcagcgg cacgccggcg atcatgacga
      601 aggtcagctt gtcgcggcgc agctggcgca gctccttgag gacgatggcg cccatccggc
      661 gcaggttcat ggcgtggcct ccagcggctt gcgggtgacg gcgacgaaca cgtcttccag
      721 gttggcctcg ccgtcgcgca gctcggcgtt caccccggcg cggcgcagga cggcggcgat
      781 gtcatcgcgc acgccgtcgg cggcgcagag cacgcgcagg gtggcgccga tctgcgccat
      841 cgccagcacc tgggggtgac cctgcagggc gcgctgggcc tcgcgcggct gcgcgcattc
      901 gatcagcagc gggtggccgg gcagggcgtc catcagctcg cgcgggctgc cgtcggccac
      961 caggcggccg gcgtcgagaa tgcccagacg cgtgcagcgc tcggcctcgt ccatgtaatg
     1021 ggtggagacc agcagggtgg tgccggcctc ggccagctcg aacagcgagt cccagaattc
     1081 ccggcgcgac tgcgggtcga cggcgctggt gggctcgtcg agcagcagca ggtcgggctt
     1141 gtgcagcacc gcgccggcca gggccaggcg ctgcttctgg ccgccgctca tggtcccggc
     1201 catctgcttg cggcggtcgg ccagccagta gcgctccagc agctcgtcga tgcgttcgcg
     1261 ggtgtcgcgg cggccgatgc cctgcacggc ggccaggaat tccaggttct cctgcaccgt
     1321 gaggtcttcg tagagcgaga acttctgcgt catgtagccg atgcgccgct tcagttcctc
     1381 ggcgtcgcgc gggatctggt aaccgagtac ttccacctcg ccttcgctgg gctgcagcag
     1441 cccgcagagc atgcggatgg tggtggactt gccgcagccg ttggggccga ggaagccgaa
     1501 cacctcggcg cgcggcaccg agaggtcgag attgtcgacc gcggtaagct tgccgaagcg
     1561 cttgctcagg ccgcgggcgc ggatcaccag atcagtgtcg ttcatcgatc cgctccgcct
     1621 gcaatggcag gccggccggc agctggcgcg cggcctcgcc ctcgagcacc acctcggcgc
     1681 ggtacatcag gcggctggcg tcgtcgccgg tgagggcgta gtagggcgtg aagctggcct
     1741 cgctgcggat gttgcgcacg cgaccgtcga agggttgctc gatgccctcg acgcgaatgc
     1801 gcagggtgtc gcccaccttc accccggcgc ggatgctggc gggaatgaac agccgcgcgt
     1861 agggcgcctc gccgaccagc aggctgacca cttcggcgcc ggccggcggc tggtcgccga
     1921 cccggaacgg cagcgcgtcg accaggccgg cgcgcggcgc acgcaggctc aggtgctcgc
     1981 ggccgacctc cagctgggcc aggttgccac gggccgcgtc gagggcggcg gcggcctgtt
     2041 ccagctgctc cggacgggtg ccgttggtca gctcgcgcag ctgcgcctcg gcgctgcggg
     2101 tggcggcgcc ggcctgatct cgggcggcgc gggcgcggtc cagctcggcc acggcgacca
     2161 tcttgcgccg gtgcagctcg gcgatacggg tgaagttgcg ctcggcgtcc gtcagctcgg
     2221 cgcggttgcg cgccagggtg gcgcgggccg agtcgatggt ctcgctgcgc gcaccgttgc
     2281 tcagttcggc cagccgtgcg gcggcttggt ccacctcgcc gcgggcctgg gcgatgcggg
     2341 catcctggcg gcgcggatcg agttccacca gcaactggcc ggcctcgacc cggtctcctt
     2401 cggcgacctt ccaggccagc acgggctcgg aggtctcggc gggcaggccg atgcggtccc
     2461 attccagggt gccgagcagc tgttcgccgc cggagtcgca gccggtcagg ccggcgacca
     2521 ggaggctggc gagcagcaga cgtgatcgca gcagacggta catctcaggg ctccattgcg
     2581 cccttgagca gggcgagggt gtgggcaatc agcgcgttgt cgccgatctg cgggttggcg
     2641 aacacgccac gccagatggg cgcggcggcg taggggagga gggtgaggcc gatcagcgag
     2701 acaaccagca ggcgcgggtc gaggtcgggg ttgagcgcgc cgcgggcctg ggccgcggcg
     2761 aatttctgcg ccagcagcag cggcaccatc ggcgcgatgc ggtccatcag gcgctcgcgc
     2821 agcacgccgc cgtcgcagag gatctcgcgc acccagagct gggagatcca tgggtgggtg
     2881 gcgacattgc ggctcatgtc gcggaggaag gcttcgacca gcgccagcgg atcgtcgccg
     2941 gcctgctgca ggccctgggc ggcggtggtc accagcggca ggaagcgttc ctcgaccatg
     3001 gcgtcgacca ggccgtcctt gccgccgaag tagtagttga gcagggccgg agtcacgccc
     3061 gcgcgctcgg caatggcgcg caggctggtg gcgtggatgc cctggtgggc gaagagg
//
LOCUS       DATIHC010000030         3974 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28096, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000030 DATIHC010000000
VERSION     DATIHC010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3974
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28096"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            27..443
                     /locus_tag="VLF16_00515"
     CDS             27..443
                     /locus_tag="VLF16_00515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012076503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HSX69384.1"
                     /translation="MKIGELAKRTGLAASRIRFYEASGLIAAQRQANGYREYPPQTEQ
                     TLLVITRAQQSGFSLEEIRRLLPDPVAKSWPHDELLAALRRKVEEIEAMQARLAQNKA
                     QLLATIADIENKPEGMQCGENAERMLASLQSRRQSE"
     gene            691..1104
                     /locus_tag="VLF16_00520"
     CDS             691..1104
                     /locus_tag="VLF16_00520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014854519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPF/RaiA family ribosome-associated protein"
                     /protein_id="HSX69385.1"
                     /translation="MQVQVHTNQIEGSARLQEWVSAEVMDRLDHFDEMLTRVVVHISD
                     ENAHKSGSDDKRCQIEARLKGHQPLSVTHKADAMGLAVDGAAEKMRHALENLTGRLEA
                     KTVSTGRIADAGDVQLSDALLEEEFLEKQDDLERG"
     gene            1485..2849
                     /locus_tag="VLF16_00525"
     CDS             1485..2849
                     /locus_tag="VLF16_00525"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase family protein"
                     /protein_id="HSX69386.1"
                     /translation="MQFAPVEQARAFLDANPDIELIELFVLDANGVPRGKLLHREELL
                     ALYQSGRPLPSTMLGLTLPGEDVEDSGLVWEVGDIDCRAYPLPGSLVRLPWRQIPTAA
                     VQVSMHPSEGLPAAVADPRHLLVRVIDQLKADGYHPVMACELEFYLLDQQRDAQGRPQ
                     PALDADGGRPRSTQVYGLRELEQIEPFLADLYAACKAQGIPARTAISEYAPGQVEITL
                     EHGDALAAMDQAVRYKRLVKGVAHKHGMQACFMAKPFDHLAGTGMHMHVSLADGQGAN
                     LFASEDKAGSPLLRQAVGGMLASLLDSLLLFCPNANSYRRFQANSYAPLAPTWGVDNR
                     TVSLRVPGGPAHTRHVEHRICGADANPYLAAAAILAGIHRGIRERLDPGAPVEGNGYA
                     QAREYLPTDWLASLRALERSAWARDAFGADFLRVYLAVKRAEYRQFMGEVGEQDWRWY
                     LTNA"
     gene            2953..>3974
                     /locus_tag="VLF16_00530"
     CDS             2953..>3974
                     /locus_tag="VLF16_00530"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSX69387.1"
                     /translation="MNAATQPVIPAAERAKSYYSATLNQETHYPTLQGQVSVDVAIIG
                     GGFTGVATAVELAERGLKVAIVETHKIGWGATGRNGGQVTGSLSGDEAMRTQMRNSLG
                     EEVDDFIWHLRWRGHEIIKNRVAKYGIRCDLKHGHLHAAMKPAHMDELRASYAEAVRR
                     GMGDEVTLLDAAGVREHLASDLYLGAIKNTRNLHLHPLNLCIGEARAAESLGALIFEH
                     SEVLDIVQSANPAVITAQGRIDAKQVLLAGDVYHKLARKQLKGMIFPAMGGIVTTEPL
                     GELAKTINPQDLAVYDCRFVLDYYRMTADGRLLFGGGANYSGRDSRDIAGELRPCIER
                     TFPQLKG"
BASE COUNT          703 a         1419 c         1284 g          568 t
ORIGIN      
        1 ggtcaatagc ccccggaggc aattccatga agatcggcga actggccaag cgcaccggcc
       61 tggcggcgtc gcgcatccgc ttctacgagg ccagcgggct gatcgccgcc cagcgccagg
      121 ccaacggcta tcgcgaatac ccgccgcaga ccgagcagac cctgctggtg atcacccgcg
      181 cccagcagtc cggcttcagc ctggaggaga tccgccgcct gctgccggac ccggtggcca
      241 agagctggcc ccacgacgaa ttgctcgccg cgctcaggcg caaggtcgag gagatcgagg
      301 cgatgcaggc gcgcctggcg cagaacaagg cgcagctgct ggcgaccatc gccgacatcg
      361 agaacaagcc cgagggcatg cagtgcggcg agaacgccga gcgcatgctg gccagcctgc
      421 agagccggcg ccagagcgag tagggccgca atctgacgaa acatccctgc gacatcttgg
      481 atttgcccgc caggggcggc tgtagtaaga ctggagccag agattcggac cgcggcctgg
      541 ccgccgtccc gtcgagtcgt gtggcccagc agggggagtg atgtgccgat ggcggcacgc
      601 cacgcttggc aggcaacacc agaggagacg cttcaccgcc tgacccgcag ccgcatgcct
      661 cggaataccc caggaaaacg aggatgccct atgcaagttc aagttcacac gaaccagatc
      721 gaaggtagtg ctcggcttca ggaatgggtc agtgcggagg tgatggatcg gctcgatcac
      781 ttcgacgaaa tgctgacccg cgtggtggta cacatcagcg acgagaacgc acacaagtcc
      841 ggcagcgacg acaagcgctg ccagatcgag gcccggctca agggtcatca gcccctatca
      901 gtgacgcaca aggccgatgc catgggcctg gccgtcgacg gcgccgccga aaaaatgcgc
      961 cacgccctgg agaacctgac cggccgcctg gaggccaaga ccgtttccac cggccgcatc
     1021 gccgatgccg gcgacgtcca gctcagcgac gcgctgctgg aagaggaatt cctggaaaag
     1081 caggacgacc tcgaacgcgg ctgaccctcc ctcatccctc tggctcgaac aaccgcccgc
     1141 tttgggcggt tgtcgtttgt gcgagggatt gtttagccag ccctgaactg agtgtgtaaa
     1201 aaatccgatt taacccaggc tcgccggcgt gcgagtctcg gatcatgagt gtgcccagcc
     1261 gtcgatccag tctcctatcc cgcccgtgcc cgacacggcg cggcgacgcc gacgcgctac
     1321 tccctgaaat cctcgccttc tgggcgctct ggcattgccg ccatgcgcgc ccgccggacg
     1381 ccttcctcgc tgcctgaaca cgccagccgc gccatgcccg cggctcgcct ttcatcttgt
     1441 ctgccccttc agacaccgtg cgccgctggc gcaagcgagg aatcatgcaa ttcgctcccg
     1501 tcgagcaagc ccgggcgttt ctcgatgcca accccgatat cgaactgatc gagctgttcg
     1561 tgctggacgc caacggcgtg ccgcgcggca agctgctgca ccgcgaggag ctgctggcgc
     1621 tgtaccagag cggccggccg ctgcccagca ctatgctcgg cctgaccctg cccggcgagg
     1681 atgtcgagga ctccggcctg gtctgggagg tgggcgacat cgactgtcgc gcctacccgc
     1741 tgcccggcag cctggtgcgc ctgccgtggc ggcagattcc caccgccgcc gtgcaggtct
     1801 ccatgcaccc gagcgagggc ctgccggccg cggtggccga cccgcgtcac ctgctggtgc
     1861 gggtgatcga ccagctcaag gccgacggct accacccggt gatggcctgc gagctggagt
     1921 tctacctgct cgaccagcag cgcgatgccc aggggcgtcc gcaaccggcc ctggacgccg
     1981 acggtggccg cccgcgcagc acccaggtgt atggcctgcg cgagctggag cagatcgagc
     2041 cgttcctagc cgacctctac gccgcctgca aggcccaggg cattccggcg cgcacggcga
     2101 tttccgaata cgcgccgggc caggtggaga tcactctgga gcacggcgat gcgcttgccg
     2161 ccatggacca ggccgtgcgc tacaagcgcc tggtcaaggg cgtggcgcac aagcacggca
     2221 tgcaggcgtg cttcatggcc aagccgttcg accacctggc cggcaccggc atgcacatgc
     2281 acgtgagcct ggcggacggg cagggcgcca acctgttcgc cagcgaggac aaggccggca
     2341 gcccgctgct gcgccaggcg gtcggcggca tgctcgcaag cctgctcgat tcgctgctgc
     2401 tgttctgccc caacgccaac tcctaccggc gcttccaggc caacagctac gcgccgctgg
     2461 cacccacctg gggcgtggac aaccgcaccg tgagcctgcg cgtgcccggc ggcccggcgc
     2521 acacccgcca tgtggagcac cgcatctgcg gcgccgacgc caatccctat ctggccgccg
     2581 ccgcgattct tgccggcatt caccgtggca tccgcgagcg cctcgacccc ggcgcgccgg
     2641 tcgagggcaa cggctacgcc caggcccgcg agtatctgcc gaccgactgg ctggcctcgc
     2701 tgcgcgcgct ggagcgctcc gcctgggctc gcgatgcctt cggcgcggac ttcctgcgcg
     2761 tgtacctggc ggtgaaacgc gccgagtacc gccagttcat gggcgaggtg ggcgagcagg
     2821 actggcgctg gtacctgacc aacgcgtgaa cccttcgtag ggtggaaagc cgcgtcagcg
     2881 ctttccacca caactttcac ggtggaaaag accaggcgtc gatttccacc ctaggccgac
     2941 aaggaaatcc agatgaatgc cgcaacccaa cccgtgatcc ccgccgccga gcgggccaag
     3001 tcctactaca gcgccacgct gaaccaggag acccactacc cgaccctgca gggccaggtc
     3061 agcgtcgacg tcgccatcat cggcggcggt ttcaccggcg tcgccaccgc cgtggagttg
     3121 gccgagcgcg gcctcaaggt ggccatcgtc gagacccaca agatcggctg gggcgccacc
     3181 gggcgcaacg gcggccaggt caccggcagc ctgtccggcg acgaggccat gcgcacccag
     3241 atgcgcaaca gcctgggcga ggaagtcgac gacttcatct ggcacctgcg ctggcgcggc
     3301 cacgagatca tcaagaaccg cgtggccaag tacggcatcc gctgcgacct caagcacggc
     3361 cacctgcacg cggcgatgaa gcccgcgcac atggacgagc tgcgcgcctc ctacgccgag
     3421 gcggtgcgcc gcggcatggg cgacgaggtg accctgctcg acgccgccgg cgtgcgcgag
     3481 cacctggcca gcgacctgta cctgggcgcg atcaagaaca cccgcaacct gcacctgcat
     3541 ccgctcaacc tgtgcatcgg cgaggccagg gccgccgaga gcctgggcgc gctgatcttc
     3601 gagcattccg aggtgctgga catcgtccag agcgccaacc cggcggtgat caccgcccag
     3661 ggccgcatcg acgccaagca ggtgctgctg gccggcgacg tctaccacaa gctggcgcgc
     3721 aagcagctca agggcatgat cttcccggcc atgggcggca tcgtcaccac cgagccgctg
     3781 ggcgagctgg ccaagacgat caacccgcag gacctggcgg tgtacgactg ccgcttcgtg
     3841 ctcgactact accgcatgac cgccgacggg cgcctgttgt tcggcggcgg cgccaactac
     3901 tccggccgcg actcgcgcga catcgccggc gagctgcgcc cgtgcatcga acgcaccttt
     3961 ccgcagctca aggg
//
LOCUS       DATIHC010000031         3791 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2409, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000031 DATIHC010000000
VERSION     DATIHC010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3791
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2409"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..223
                     /locus_tag="VLF16_00535"
     CDS             <1..223
                     /locus_tag="VLF16_00535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011063971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HSX69388.1"
                     /translation="QGDIIELGLTATDFGRSSVTLRCEVRNKITRKSILTIDRLVFVH
                     LGEDGLPAPHGKTEISYIRDRFKDEPATA"
     gene            287..736
                     /locus_tag="VLF16_00540"
     CDS             287..736
                     /locus_tag="VLF16_00540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019097660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HSX69389.1"
                     /translation="MKSKLLLALLACTLLAGCDRVDPNSPLGKRQALFEEMLRTSEDL
                     GGMLRGRLSFNAQRFAEGAIKLDELSRQPWQHFPQVREEAGDSQARDEVWQRQERFQQ
                     LARDLEAATAELRGAAQVEPLKPRTLGAPMAKVEAACKACHEEFRIY"
     gene            complement(962..2620)
                     /gene="ligB"
                     /locus_tag="VLF16_00545"
     CDS             complement(962..2620)
                     /gene="ligB"
                     /locus_tag="VLF16_00545"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012699047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigB"
                     /protein_id="HSX69390.1"
                     /translation="MYRRIASLLLFACSAQATPCPDWPAARAGEEIATLERRLAEWDH
                     AYHVQGRALVDDDIYDQSRARLAQWRTCFARPEASADAPLRGAGGPVAHPVAQTGLSK
                     LRDDAAVRTWMAGRDDLWIQPKVDGVAVTLIYRGGRLQQAISRGDGRTGQDWTARARL
                     IPAIPPQLLHDEELILQGELYWRAAAHVQARDGGRNLRGKAAGAMARGTPDAATTAGV
                     GLFVWDWPNGPASMAERLQGLRELGFADSAELTLPLTGVEQAGRWRERWYRSELPFAT
                     DGVVLRQGSRPAGHGWVAEPPSWAAAWKYPPRQALAQVRAVQFEIGRTGRITPLLQLQ
                     PVELDGRRISRVGLGSLQRWQTLDVRPGDEVAIALAGLTIPRLEGVVWRSRQRPELRV
                     PDPAQHHALSCWRPTPGCESQFAARLRWLGGERGLALSGVGAGAWNSLRPQGLLDWLE
                     LDAATLAGRPGLGAKRAATLNAAFAQARQRPFRQWLLALGLPPYGSAPLDGGWELLAA
                     RSARDWDGYTGVGPTRATQLAAFFRHPEVLQLRERLRSAGVDGF"
     gene            complement(2686..3072)
                     /locus_tag="VLF16_00550"
     CDS             complement(2686..3072)
                     /locus_tag="VLF16_00550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007894925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 domain-containing protein"
                     /protein_id="HSX69391.1"
                     /translation="MSQRLLANILLGGCAVLITLPAAAETGGCAAKRDHLQQQIEAAR
                     SAGNRDRQAGLETALSQVVEHCDDGELRKSREEEVLDAEHEVRTREAELQEALKQGEP
                     AKIDKRRDKLAESREELREAQEALQR"
     gene            complement(3215..>3791)
                     /locus_tag="VLF16_00555"
     CDS             complement(3215..>3791)
                     /locus_tag="VLF16_00555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004373084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methionine adenosyltransferase domain-containing
                     protein"
                     /protein_id="HSX69392.1"
                     /translation="EEIIKPVLPAKWLHKGTKFHINPTGKFVIGGPVGDCGLTGRKII
                     VDSYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADRCEIQVSYAIGVA
                     QPTSISINTFGTHKIAEDKIIKLVREVFDLRPYAITKMLDLLHPMYQATAAYGHFGRT
                     PERKTVGEDSFTTFTWEQTDKVDALRAAAGL"
BASE COUNT          530 a         1304 c         1376 g          581 t
ORIGIN      
        1 ccagggcgac atcatcgagc tgggcctgac ggccaccgat ttcggtcgta gctcggtcac
       61 cttgcgctgc gaggtgcgca acaagatcac ccgcaagagc atcctgacca tcgaccgcct
      121 ggtgttcgtc catctcggcg aggacggcct gccggcgccc cacggcaaga ccgagatcag
      181 ctatatccgc gaccgcttca aggatgagcc tgcgacagcc tagcgcttgg cgggcgggcg
      241 gagactggca atactgtcgg gccttcgcac cgaccggttg tagatgatga agtccaaact
      301 gctcttggcc ctgctggcct gtaccctgct cgccggctgt gaccgggtcg accccaactc
      361 gccgctgggc aagcgccagg cgctgttcga ggagatgctg cgtaccagcg aggacctggg
      421 tggcatgctg cgcgggcgcc tgtcgttcaa tgcccagcgc ttcgccgagg gggcgatcaa
      481 gctcgacgag ctgtcgcgcc agccctggca gcatttcccg caggtccgcg aagaggccgg
      541 cgacagccag gcgcgcgacg aggtctggca gcgccaggag cgcttccagc aactggcccg
      601 cgacctcgag gcggcgaccg ccgagctgcg cggcgcggcg caggtcgagc cgctgaagcc
      661 gaggaccctg ggcgcgccga tggccaaggt cgaggcggcc tgcaaggcct gccacgaaga
      721 attccgcatc tactgacgtc gaggccgaag ggtgcgccat gcgcaccgtt atccgttggc
      781 cagatgctca agattggatg ccagagcggc gccgattcgg agcgcccagg ggctcgcttc
      841 cctgtcggct ccgatggtgc gcacggcgca ccctacgttg gacccccgtg ttgcgctcgc
      901 atagggtgcg ccgcgcgcac catgactaag gttgggccgt gcaccctgga gcttcgccga
      961 cttagaagcc gtctaccccg gcgctacgca gccgctcgcg cagttgcagc acctcgggat
     1021 ggcggaagaa cgcggccagc tgcgtggcgc gggtcggtcc cacgccggta tagccgtccc
     1081 agtcacgggc gctgcgcgcc gccagcagtt cccagccgcc gtccagcggg gccgagccgt
     1141 agggtggcag gcccagggcc agcagccatt ggcggaacgg gcgctggcgc gcctgggcga
     1201 atgccgcgtt cagcgttgcc gcgcgcttgg cgcccaggcc ggggcgcccg gccagcgtgg
     1261 cggcatccag ctccagccag tccagcaaac cttgcggacg caggctgttc caggctccgg
     1321 caccgacgcc ggaaagcgcc aggccgcgct cgccgcccag ccagcgcaag cgggcggcga
     1381 actggctctc gcagccgggc gtcggtcgcc agcagctcag cgcgtggtgt tgcgccgggt
     1441 ccggcacgcg cagttcgggg cgctgccggc tgcgccagac cacgccttcc agccgcggga
     1501 tggtcaggcc ggccagggca atcgccacct cgtcgccggg acgcacatcc agggtctgcc
     1561 agcgctgcag ggagccgagg ccgacccggc tgatccggcg gccgtccagt tccaccggct
     1621 gcaactgcag cagcggcgtg atgcgcccgg tgcggccgat ctcgaactgc accgcgcgta
     1681 cctgcgccag cgcctggcgc ggcgggtact tccaggcggc ggcccagctc ggcggttcgg
     1741 cgacccagcc gtggccagcg gggcggctgc cctgacgcag caccacgccg tcggtggcga
     1801 acggcagttc ggagcggtac cagcgctcgc gccaccggcc ggcctgctcg accccggtca
     1861 gcggcagcgt cagttcggcg ctgtcggcga accccagttc gcgcaagccc tgcaggcgct
     1921 cggccatgct cgccgggccg ttgggccagt cccagacgaa cagacccacg cccgctgtcg
     1981 tggccgcatc cggtgtgccc cgggccatgg cgccggctgc cttgccgcgc aggttgcggc
     2041 caccgtcgcg ggcctgcaca tgggctgcgg cgcgccagta cagctcgccc tgcagaatca
     2101 gttcttcatc gtgcaacagc tgtggcggaa tcgccgggat caggcgggcg cgcgccgtcc
     2161 agtcctggcc ggtgcggccg tcgccgcggc tgatcgcctg ctgcagccgg ccgccccgat
     2221 agatcagcgt gacggccacg ccatcgacct tgggctggat ccacagatcg tcgcgcccgg
     2281 ccatccaggt gcgcaccgcg gcgtcgtcgc gcagcttgct caggccggtc tgcgccacgg
     2341 gatgggcgac ggggccgcca gccccgcgca gtggcgcgtc ggcggaggcc tcgggccggg
     2401 cgaagcaggt gcgccattgg gcgaggcggg cgcggctctg gtcgtagatg tcgtcgtcga
     2461 ccagggcgcg gccctgcacg tgataggcgt gatcccattc ggcgaggcgc cgttccagcg
     2521 tggcgatttc ctcgccggcc cgggcggcgg gccagtcagg gcagggtgtg gcctgcgcgg
     2581 agcaggcgaa cagcaggagt gacgcgatcc ggcggtacat ggcgagcatc cttgctccag
     2641 agtgaccggc aacagcctag tcgagccacc acggctgtgc cgcaatcagc gctgcagggc
     2701 ttcctgggcc tcgcgcagct cctcgcggga ctcggccagc ttgtcgcggc gcttgtcgat
     2761 cttggccggt tcgccctgct tcagcgcctc ctgcagctcg gcttcgcggg tgcgcacttc
     2821 gtgctccgca tcgagcacct cctcctcgcg agacttgcgc agctcgccgt cgtcgcaatg
     2881 ctcgacgacc tggctcaggg ccgtctccag cccggcctga cggtcgcggt tgcccgcgga
     2941 gcgggcggct tcgatctgct gctgcaggtg gtcgcgcttg gccgcacagc caccggtctc
     3001 ggcggcggcc ggcagggtga tcaggacggc gcagccgccg agcaggatgt tcgcgagtag
     3061 gcgctgggac atgacaggtt cctcctgggt tgcagaatgg accgcagcgg taggggcagg
     3121 gttgcatgct ggcacggacg gcgcgggcga gctttgatcc cgggcataaa aaagccccgc
     3181 cgaggcgggg cttttcgtgc ggcgtcggtg cggcttacag accggcggcg gcgcgcaggg
     3241 cgtcgacctt gtcggtctgt tcccaggtga aggtggtgaa gctgtcttcg cccacggtct
     3301 tccgctccgg ggtgcggccg aagtggccgt aggccgcggt ggcctggtac atcgggtgca
     3361 gcaggtcgag catcttggtg atggcgtagg ggcgcaggtc gaagacttcg cgcaccagct
     3421 tgatgatctt gtcttcggcg atcttgtggg tgccgaaggt gttgatcgag atggaggtcg
     3481 gctgggccac gccgatggcg taggacacct ggatctcgca gcgatcggcc aggccggcgg
     3541 cgacgatgtt cttggccacg taacgaccgg cgtaggcggc cgagcggtcg accttggacg
     3601 ggtccttgcc ggagaaggcg ccgccgccgt gacgggccat gccgccgtag gagtcgacga
     3661 tgatcttgcg gccggtcagg ccgcagtcgc ccaccgggcc gccgatcacg aacttgccgg
     3721 tcgggttgat gtggaacttg gtgcccttgt gcagccactt cgccggcagc accggcttga
     3781 tgatctcctc g
//
LOCUS       DATIHC010000032         1685 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2410, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000032 DATIHC010000000
VERSION     DATIHC010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1685
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2410"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1685)
                     /locus_tag="VLF16_00560"
     CDS             complement(<1..>1685)
                     /locus_tag="VLF16_00560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003120364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein Rhs"
                     /protein_id="HSX69393.1"
                     /translation="TLFPLPSEQRPAITNRLSRAAIYLGQDPAELILAQAGEAPRFYH
                     FRRHAEGGYLIAISDAYGNRLELSRDLAGRLQRLSSAGRALLLRYESSHIVAVDYQLQ
                     RPAENQEASWESVQTLVRYQYNERGQLIAASNALGETEHYRYDEEHVILERRLAGGAA
                     FYWEWQGRGKLARCVRHWANFGQMGARYVWDDQGSVTVVNADGSKETYVHDQNARLIR
                     QVDPDGAETLRAYDDKGQLVAEKNPLGAITEYRYDEAGRLETRIPAEGEAVHYSYFDG
                     QVRSVRRGKATWKYERNTQGDITEQIDPLGQSTHYRYDTRGRLLEIRHPDGSQHLLVW
                     NAQGELIEEQMPSSGIRRYRYDAFGRLITRQDEQGALTQYQWDAVGRLAQVTLPGGAS
                     RAYGYNAYGKVTSERDEQGRVTRYEYADGLHLVSRRINPDGSQLRYRYDNARLLLTDI
                     ENERGEHYRLDYHPNGLISQETGFDGRRTAYCYDLAGHLIEKKEFAEDGSERTTAYQR
                     DGVGRLLVKTLPDGEQIHYAYDALGRLVSVDDGEWPLAYSYDLRDRLIEEHQG"
BASE COUNT          231 a          541 c          590 g          323 t
ORIGIN      
        1 cagccctggt gttcttcgat cagccggtcg cgcaagtcgt aggagtaggc cagcggccac
       61 tctccatcgt cgacgctgac cagacggccc agagcatcgt aggcgtagtg gatctgctcg
      121 ccatcgggca gggtcttgac cagcaagcgc ccaacgccgt cgcgctggta ggcggtggtc
      181 cgttcgctgc cgtcttcggc gaactccttc ttctcgatca ggtggccggc gaggtcgtag
      241 cagtacgccg ttctgcgtcc gtcaaagcct gtctcctggc tgatcagccc gttggggtgg
      301 tagtccaggc ggtagtgctc gccacgctcg ttctcgatat cggtgagcag caggcgggca
      361 ttgtcgtagc ggtagcgcag ctggctgccg tcggggttga tgcggcgact gaccagatgc
      421 agcccgtcgg catattcgta gcgggtgacg cgcccctgct cgtcgcgctc gctggtgacc
      481 ttgccatagg cgttgtagcc ataggcacgg cttgcgccgc cgggcagagt gacctgggcc
      541 aggcggccga cggcgtccca ttgatactgg gtcagcgcgc cctgttcgtc ctgccgggtg
      601 atcaggcgac cgaaggcgtc gtagcgatag cggcggatgc ccgagctcgg catctgctct
      661 tcgatcagct cgccctgggc attccacacc agcaagtgct ggctgccgtc cggatggcgg
      721 atttccagca ggcggccgcg ggtgtcgtag cgatagtgcg tgctctggcc gagcggatcg
      781 atctgctcgg tgatgtcgcc ctgggtgttg cgctcgtact tccaggtcgc cttgccgcgc
      841 cgcacgctgc gcacctggcc gtcgaagtaa ctgtagtgaa ccgcctcgcc ctcggccggg
      901 atgcgcgtct ccaggcgccc ggcctcgtcg tagcgatact cggtgatcgc gccgagcgga
      961 ttcttctcgg cgaccagctg gcccttgtcg tcgtaggcac gcagcgtctc ggcaccgtcc
     1021 gggtcgacct ggcggatcag gcgcgcgttc tggtcgtgga cgtaggtctc cttgctgccg
     1081 tcggcgttga ccacggtgac gctaccctga tcgtcccaga catagcgggc gcccatctgc
     1141 ccgaagttgg cccagtggcg cacgcaacgc gccagcttgc cgcgaccctg ccactcccag
     1201 tagaaggccg caccgccggc gagccgacgc tcgaggatca cgtgctcctc gtcgtagcga
     1261 tagtgctcgg tctcgcccag ggcgttgctg gcggcgatca gctggccgcg ctcgttgtac
     1321 tggtagcgaa ccagggtctg cacgctctcc cagctggctt cctggttttc cgcggggcgc
     1381 tggagctgat agtccacggc cacgatatgg ctgctctcgt agcgcagcag cagggcgcgc
     1441 ccggcactgc taaggcgctg cagccttccg gccaggtcgc ggctgagctc gaggcggttg
     1501 ccgtaggcat cgctgatagc gatcaggtag ccgccctcgg catggcgacg gaaatggtag
     1561 aagcgcgggg cttctccggc ctgggccagg atcagttcgg ccgggtcctg gccgaggtag
     1621 atggcggcgc gggacaggcg gttggtgatg gccgggcgct gctcactggg cagggggaac
     1681 agggt
//
LOCUS       DATIHC010000033         4020 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2412, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000033 DATIHC010000000
VERSION     DATIHC010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4020
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2412"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            302..883
                     /gene="rpoE"
                     /locus_tag="VLF16_00565"
     CDS             302..883
                     /gene="rpoE"
                     /locus_tag="VLF16_00565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003455239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoE"
                     /protein_id="HSX69394.1"
                     /translation="MLAQEDDQQLVERVQRGDKRAFDLLVLKYQHKILGLVVRFVHDS
                     HEAQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIAINTAKNYLVSRGRRPPDSDVSAE
                     DAEFYDGDHALKDIESPERSMLRDEIEATVHRTIQQLPEDLRTALTLREFDGLSYEDI
                     ASVMQCPVGTVRSRIFRAREAIDKALQPLLQGV"
     gene            921..1499
                     /locus_tag="VLF16_00570"
     CDS             921..1499
                     /locus_tag="VLF16_00570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003184342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016989 - sigma factor antagonist activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RseA family anti-sigma factor"
                     /protein_id="HSX69395.1"
                     /translation="MSRETLQESLSAVMDNEADEMELRRVLASAGSDEELRATWSRYQ
                     IARAVMHKELLEPRLDIAAAVSAALASEALPTQARSPWRMVSRVAVAASVTLAVLAGV
                     RFYNQDELSATQLAQQDGQPELTLPQVQGPAVLAGYTEPAAPQQQSAEQAGSKWHEQR
                     LPSYLRQHAQQGAATGVDSALPYARAASLENR"
     gene            1508..2449
                     /locus_tag="VLF16_00575"
     CDS             1508..2449
                     /locus_tag="VLF16_00575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007979788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucB/RseB C-terminal domain-containing protein"
                     /protein_id="HSX69396.1"
                     /translation="MRVIPLVVLLGSCLAVPAQAAESWLQRLAQADRQSFQGTFIYER
                     NGSFSTHGVWHRGGEEGVTERLLQLDGPEQEVLRVNGKPRCMSGVFAEQAIDAKWPAR
                     ELDAKQLEQRYDLRVLGHSRVAGRAATVLALIPRDQHRYAFELHLDDETALPLKSLLI
                     SEKGQLLERFQFVSFEPVDQFAAADLQPSDACKSVNFTQLAELPASWQAGWVPPGFEL
                     DQALRRGSPSSEEQVACLLYGDGLARFTVFLEPLRGDVLAEDARSQLGPTAVVSRRMS
                     TADGDMMVTVVGEIPLGTAERVALSMQTAATVESTAQ"
     gene            2551..3978
                     /locus_tag="VLF16_00580"
     CDS             2551..3978
                     /locus_tag="VLF16_00580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegQ family serine endoprotease"
                     /protein_id="HSX69397.1"
                     /translation="MLSLKSSLSGLCALLLLGQMSLARAELPEFTELVEEASPAVVNI
                     STRQNMPQRNVAIPGGQMPDLEGLPPMFREFFERNIPQVPRGPGGGRQREAQSLGSGF
                     IISADGYVLTNNHVVADADEIIVRLSDRSELEAKLIGADPRTDVALLKVEGKDLPTVR
                     LGKSQALKVGEWVLAIGSPFGFDHSVTAGIVSAKGRSLPNESYVPFIQTDVAINPGNS
                     GGPLFNLDGEVVGINSQIFTRSGGFMGLSFAIPIDVAMDVANQLKNDGKVSRGWLGVV
                     IQEVNKDLAESFGLDKPAGALVAQVLDDGPAAKGGLQVGDVILSLNGQPIVMSADLPH
                     LVGVLKPGSKAELEVVREGDRKRIQLSIGALPDEEEGTPVVGDAGVERSSNRLGVSVV
                     DLTAEQKKAFDLRGGVVIKEIQNGPAALIGLRPGDVITHLNNQAIDSTDTFTQVAKDL
                     PVNRSVSMRVLRQGRASFITFKLAE"
BASE COUNT          738 a         1169 c         1318 g          795 t
ORIGIN      
        1 agtatataga gggggtgggc ggcacaatag cggccttatg acgtagcaaa gcgctctgga
       61 actttcttag tcgatcaagt tccaacgaca gttgcccgag ctgccggtcg tataggtgcg
      121 gcagcaacag ggctcagatc attcggagcg gcggtcgcag tactgcagtg tctcgcgaaa
      181 accccagcgg atggcgcgag acttattgga ggggagaact tttgcataaa gcccgagtct
      241 atcttggcag accgacagac tggctggctc ggatctcctc cagcactaac gaggagtatt
      301 catgttagcc caggaagacg atcagcaatt ggtcgagcgg gtgcagcgcg gcgacaagcg
      361 tgcattcgac ctgctggtgc tcaagtatca gcacaagatt ctcggcctgg tggtgcgttt
      421 cgttcatgac agccatgagg ctcaggatgt tgcccaggaa gcgttcatca aggcctatcg
      481 tgcattgggg aatttccgcg gtgacagtgc gttctacacc tggctgtacc gcatcgccat
      541 caatacggcg aagaactacc tggtctcgcg gggccggcga ccgccggaca gcgatgtcag
      601 cgcagaggat gcggagttct acgatggaga tcatgcgctc aaggacatcg agtcgccgga
      661 gcgttcgatg ctgcgggatg agatcgaggc caccgtgcat cggaccatcc agcaactgcc
      721 ggaggatctg cgtacggcct tgaccctgcg cgaattcgat ggattgagtt acgaggacat
      781 tgccagcgtc atgcagtgtc cggttggcac ggtgcgatcg cggatattcc gggcgcgcga
      841 agccatcgac aaggccctgc agccactgct gcagggggtg tgaatgtgag acagcggcta
      901 cagccaagag aggaaacacc atgagtcgtg aaaccctgca ggaatcgctg tccgcggtga
      961 tggataacga agcggacgaa atggaactgc gtcgagtgct ggcctccgcc ggcagcgacg
     1021 aggaactgcg tgccacgtgg tcccgttacc agatcgcccg tgcagtgatg cacaaggaac
     1081 tgctggagcc ccgcctcgat atcgcggccg cggtctccgc tgcacttgct agcgaagctc
     1141 tgccgacgca ggcccgcagc ccgtggcgta tggttagccg cgtggcggta gccgcctcgg
     1201 tcactctggc cgtgcttgcc ggcgtgcgtt tttacaatca ggacgagctg tccgccactc
     1261 agctggcgca gcaggatggc cagcccgagc tgaccctgcc gcaggttcaa ggtccggccg
     1321 tgctggctgg ctataccgaa cccgctgccc cgcagcagca gagtgccgag caagctggtt
     1381 cgaagtggca tgagcagcgt ctgccgtcct atctgcgcca gcacgcccag cagggtgcag
     1441 ctaccggcgt ggattccgca ctgccttatg cgcgagccgc tagcctggaa aatcgctgag
     1501 agggtacatg cgcgttatcc cccttgtcgt attgctcggc agctgcctgg cggtccccgc
     1561 ccaagctgcc gagagctggc tgcagcgatt ggcccaggcc gatcgccaga gctttcaagg
     1621 caccttcatt tatgagcgca atggcagttt ctccacccat ggtgtctggc accggggtgg
     1681 tgaagagggc gtgacggagc gcctgctgca gctcgacggg ccggagcagg aagtgctcag
     1741 ggtcaatggc aagcctcgat gcatgagtgg tgtatttgcc gagcaggcga tcgatgccaa
     1801 atggcccgcc agagagctgg acgccaagca gctcgaacag cgctatgacc tccgcgtcct
     1861 cgggcattca cgtgtcgcgg ggcgtgctgc cactgttctc gctttaatcc ctcgtgatca
     1921 acatcgatac gccttcgaac ttcacctcga tgatgagacc gcgcttcctc tgaagtcgct
     1981 gctgatcagc gagaagggac aattgctcga gcgttttcag tttgtgagtt tcgagccggt
     2041 cgatcagttc gctgccgccg atctgcaacc gagcgatgcc tgcaaatcgg tcaatttcac
     2101 tcaactggcg gaactgccgg catcctggca ggccggctgg gtgccgccag gcttcgagct
     2161 ggaccaagcc ctgcgccgcg gaagtccttc gtctgaagaa caggtggcat gtctgcttta
     2221 tggcgacggt ctggcccgtt tcaccgtgtt cctcgaaccg ctgcgcggcg atgttctcgc
     2281 cgaagacgcg cgcagccagc tgggcccgac tgcagtcgtg tcgcgccgca tgagtacggc
     2341 cgatggcgac atgatggtga ccgtggtcgg agagatccct ttgggcaccg cggagcgggt
     2401 ggccctgtcg atgcaaacgg ctgcgaccgt cgagagcacg gctcagtgag tcgtgttgtt
     2461 gcgtgagccg gcttctggca tgtcttgcct cgagccggct ttgtcgtgtc tgaatcaatt
     2521 cctttttctg agtggatgga gctgaagtcg atgcttagcc tgaaatcctc gttgtccggt
     2581 ctgtgcgcat tgctgcttct ggggcaaatg tccctggcgc gtgccgaact gcccgagttc
     2641 accgaattgg tggaggaggc ctcgccggcc gtggtgaaca tcagtacccg gcagaatatg
     2701 ccgcaacgaa acgtggcgat tccgggcggg cagatgcccg atctcgaagg cctgccgccg
     2761 atgtttcgcg aatttttcga acgcaatatt cctcaggttc ctcgcggtcc gggcggcggt
     2821 cgccagcgcg aggcgcaatc cctcggttcg ggcttcatca tctcggccga cggctacgtg
     2881 ctgaccaaca atcacgtggt ggcggacgcc gatgagatca tcgtgcgcct gtcggatcgc
     2941 agcgagcttg aggccaagct gatcggtgcc gacccgcgta ccgacgtggc gctgctcaag
     3001 gtcgaaggca aggatctgcc gaccgtcagg ctgggcaagt cccaggccct gaaggtgggc
     3061 gagtgggtgc tggccattgg ttcgccgttc ggcttcgatc attcggtgac cgccggtatc
     3121 gtctccgcca aggggcgtag cctgccgaac gagagctacg tgccgttcat tcagaccgat
     3181 gtggcgatca accccggcaa ctccggcggc ccgctgttca acctggatgg cgaggtggtg
     3241 ggcatcaact cgcagatttt cacccgctcc ggcggcttca tgggtctgtc gttcgccatt
     3301 ccgatcgatg tggccatgga tgtggccaat cagctgaaga acgacggcaa ggtcagccgg
     3361 ggctggctgg gtgtggtgat ccaggaggtg aacaaggatc tggccgaatc cttcgggctc
     3421 gacaagccgg cgggtgcgct ggtggctcag gtgctggacg acggccctgc ggccaagggc
     3481 ggcctgcagg tgggtgatgt gattctcagc ctgaacggcc agccgatcgt catgtccgct
     3541 gatctgcctc atctggtcgg cgtgctcaag ccgggcagca aggccgagct cgaagtggtg
     3601 cgcgagggtg accgcaagcg tatccagctg agcatcggcg cactgccgga cgaggaagag
     3661 ggtactccgg tcgttggcga tgccggcgtc gagcgcagca gcaaccgtct gggcgtctcg
     3721 gtcgtggacc ttaccgccga gcagaagaag gccttcgatc tgcgcggtgg tgtggtgatc
     3781 aaggaaatcc agaacggccc ggcggctctg atcggcctcc gcccggggga tgtgattact
     3841 cacctgaaca accaggccat cgattcgacc gataccttta cgcaggtcgc caaggacctg
     3901 ccggtcaatc gctcggtgtc catgcgcgta ttgcgtcaag gtcgggccag cttcatcacc
     3961 ttcaagctgg ccgagtaagg cgagttgtgg aaagggcggc ttcggccgcc cttttctatg
//
LOCUS       DATIHC010000034         2702 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_39791, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000034 DATIHC010000000
VERSION     DATIHC010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2702
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39791"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..269
                     /locus_tag="VLF16_00585"
     CDS             <1..269
                     /locus_tag="VLF16_00585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010225011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliP"
                     /protein_id="HSX69398.1"
                     /translation="IASPEAAPLTILIPAFVTSELKTAFQIGFMIFIPFLIIDMVVAS
                     ILMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLAGSFGTL"
     gene            281..550
                     /gene="fliQ"
                     /locus_tag="VLF16_00590"
     CDS             281..550
                     /gene="fliQ"
                     /locus_tag="VLF16_00590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HSX69399.1"
                     /translation="MTPEVAVDLFREALWLTAVIVGLTVLPSLLVGLLVAMFQAATQI
                     NEQTLSFIPRLLVMLLTLMWAGPWLVRELMEYTQTLVQNIPLLIG"
     gene            550..1326
                     /gene="fliR"
                     /locus_tag="VLF16_00595"
     CDS             550..1326
                     /gene="fliR"
                     /locus_tag="VLF16_00595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliR"
                     /protein_id="HSX69400.1"
                     /translation="MLELTNAQIGGWVGQFLLPLFRIASVLMVMPVIGTQLVPMRVRL
                     YLSLAICVVLAPNLPPMPQVDAVSLQAMLLIFEQVLIGVIFGFFLQLYFHLFTVAGQI
                     IAMQMGLGFASMVDPSNGVSVPVLGQFLLMLVTLMFLAMNGHLVVFEVLAESFVTLPV
                     GGGLLLDHYWEMAGKLSWVIAAGLLIALPVITALLIVNLAFGVMTRAAPQLNIFSIGF
                     PLTLVLGMVIFWLGLSDFLSHFQVLTSEALLQLRELARAR"
     gene            1339..2475
                     /gene="flhB"
                     /locus_tag="VLF16_00600"
     CDS             1339..2475
                     /gene="flhB"
                     /locus_tag="VLF16_00600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003155636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HSX69401.1"
                     /translation="MAESESGADKSEEPTGKRLEEARKKGQIARSRELSTLAVTMAGA
                     AALLMYGADMGQAMMDMMRGNFSLSRETLLEEGAMARHLLRTGMEALKALQPFFIVLL
                     IASIIGNVALGGWLFSGEALMPKFSRMNPLEGLKRMFSTKALVELLKALGKFVVILMV
                     ALFVLKSDQDDLLAIANESVESAILHAMDVTGWSLIWLACGLILIAALDVPFQLWDTK
                     QKLMMTKQEVKDEYKDSEGKPEVKSKIRQLQRQMAERRMMQQVPEADVVITNPTHFAV
                     ALKYDPEKGNAPLLVAKGGDFLALKIREIAQEHRVTLLESPALARAVYYSTEVDHEIP
                     AGLYLAVAQVLAYVYQLKQFRAGKGKRPSPLGSLSIPPDLRRDE"
     gene            complement(2519..>2702)
                     /locus_tag="VLF16_00605"
     CDS             complement(2519..>2702)
                     /locus_tag="VLF16_00605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012701598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006801 - superoxide metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="superoxide dismutase family protein"
                     /protein_id="HSX69402.1"
                     /translation="PPLYVDASGKSEQPVLAPRLKSLDELKGHALMVHAGGDNHSDHP
                     KPLGGGGARVACGVIR"
BASE COUNT          432 a          865 c          887 g          518 t
ORIGIN      
        1 acatcgcctc gcccgaggcc gcgccgctga ccatcctgat cccggcgttc gtcacctccg
       61 agctgaagac cgcgttccag atcggcttca tgatcttcat cccgttcctg atcatcgaca
      121 tggtggtggc cagtatcctc atggccatgg gtatgatgat gctgtcgccg ctgatcattt
      181 ccctgccgtt caagatcatg ctgttcgtcc tggtggacgg ctgggcgctg atcatgggca
      241 ccctggccgg cagcttcggc acgctataga gggcttaccg atgacccctg aagtcgccgt
      301 cgacctgttc cgcgaagcac tctggctgac cgccgtgatc gtcggcctca cggtgctgcc
      361 gagcctgctg gtgggcctgc tggtggccat gttccaggcg gccacgcaga tcaacgaaca
      421 gaccctgagc ttcattcccc gtctgctggt gatgctgctc accttgatgt gggcggggcc
      481 ctggctggtg cgcgagctga tggagtacac ccagacgctg gtgcagaaca ttccgctgtt
      541 gatcggctga tgctcgagct gaccaacgcg cagatcggcg gctgggtggg ccagttcctc
      601 ctgccgctgt tccgcatcgc ctcggtgctg atggtgatgc cggtgatcgg cacccagctg
      661 gtaccgatgc gcgtgcgcct gtatctgtcc ctggccatct gcgtggtgct ggcgcccaac
      721 ctgccgccca tgccgcaggt ggacgcggtg agtctgcagg ccatgctgct gatcttcgag
      781 caggttctga tcggcgtgat cttcggcttc ttcctgcagc tgtatttcca cctgttcacc
      841 gtcgccgggc agatcatcgc catgcagatg ggcctgggct tcgcctccat ggtcgatccc
      901 agcaacggcg tgtcggtacc ggtgctgggg cagttcctgc tgatgctggt gacgctgatg
      961 ttcctggcca tgaacggcca cctggtggtg ttcgaggtgc tggccgagag cttcgtgaca
     1021 ctgccggtag gcggagggct gctgctcgac cactactggg aaatggccgg caagctgagc
     1081 tgggtaatcg ccgcgggcct gctgatcgcg ctgccggtga ttaccgcact gctgatcgtc
     1141 aacctggcat tcggcgtgat gacccgcgct gcgccgcaac tgaacatctt ctccatcggt
     1201 ttcccgctga cgctggtgct ggggatggtg atcttctggc tgggcctctc cgatttcctc
     1261 tcgcacttcc aggtgctgac cagcgaggct ctgctgcaac tgcgcgaact ggcgcgcgct
     1321 cgctgaggag gctccagcat ggcggagagc gaaagcggcg cggacaagag tgaagagcca
     1381 acaggcaagc gcctggaaga ggcgcgcaag aaaggccaga tcgcccgctc ccgcgagctg
     1441 agcaccctcg ccgtgaccat ggccggcgcg gcggcgctgc tgatgtacgg cgccgacatg
     1501 ggccaggcca tgatggacat gatgcgcggc aatttttccc tgtcgcgcga gacgctgctg
     1561 gaagaggggg ccatggcccg ccatctgctg cgcaccggca tggaggcgct gaaggcgctg
     1621 cagccgttct tcatcgtgct gctgatcgcc tcgatcatcg gcaacgtcgc gctcggcggc
     1681 tggctgtttt ccggcgaggc gctgatgccc aagttcagcc gcatgaaccc gctggagggg
     1741 ctcaagcgca tgttctccac caaggcgctg gtggaactgc tcaaggccct gggcaagttc
     1801 gtggtcatcc tgatggtggc gttgttcgtg ctcaagtccg accaggacga cttgctggcc
     1861 attgccaacg agtcggtcga gtcggccatc ctgcacgcga tggacgtgac cggctggagt
     1921 ctcatctggc tggcctgcgg gctgatcctg atcgccgcgc tggacgtgcc gttccagctc
     1981 tgggacacca agcagaagct gatgatgacc aagcaggagg tcaaggacga gtacaaggac
     2041 tccgagggca agcccgaggt caagtcgaag atccgccagc tgcaacggca gatggccgag
     2101 cggcggatga tgcagcaggt gcccgaggcc gatgtggtga tcaccaaccc gacccacttc
     2161 gccgtggcgc tgaaatacga tccggagaag ggcaacgcgc cgttgctggt ggccaagggc
     2221 ggcgacttcc tggccctgaa gattcgcgag atcgcccagg aacaccgggt gaccctgctc
     2281 gaatcgccgg ccctggcccg ggccgtttac tactccaccg aggtggatca cgaaattccc
     2341 gccggcctgt acctggccgt ggcccaggtg ctggcctacg tctaccagct caagcagttc
     2401 cgcgccggca agggcaagcg gccgagcccg ctgggcagtc tgtcgatccc gcccgatctg
     2461 cggcgcgacg aataaggcct cgaagcgcca cgcgcctcga ggccgtcgaa ctcgccggtc
     2521 agcggatcac gccgcaggcg acccgcgcgc cgccaccgcc gagcggcttg ggatggtccg
     2581 aatggttgtc gccgccggca tgcaccatca gcgcatggcc cttgagctcg tcgaggctct
     2641 tcaggcgcgg tgccagcacc ggctgttccg acttgccact ggcgtccacg tagagcggcg
     2701 gc
//
LOCUS       DATIHC010000035         3042 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7083, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000035 DATIHC010000000
VERSION     DATIHC010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3042
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7083"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1768)
                     /gene="pbpC"
                     /locus_tag="VLF16_00610"
     CDS             complement(<1..1768)
                     /gene="pbpC"
                     /locus_tag="VLF16_00610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005753130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009274 - peptidoglycan-based cell wall
                     [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1C"
                     /protein_id="HSX69403.1"
                     /translation="MKAPSPLRALRRPWLWVPLLLLALLWSADRLFPLPLPEDGLARV
                     VLAEDGTPLWRFADAEGVWRYPVTPDEVSPYYLDALLTYEDRWFRAHPGVNPLALVRA
                     AWQNLAGGRVVSGGSTLSMQVARLLDPHQRSLGGKFKQLWRTLQLEWHLSKDEILALY
                     LNRAPFGGTLQGVAAASWAYLGKPPSQLTRAEAALLAVLPQAPSRLRPDRHPERAQAA
                     RDKVLQRLAQFEVWTPTTVDEALQEPVLLAPRQEPSLAPLLARRLNVAGSPPLIRTTL
                     DASLQRRLEDLLLGWRARLPERTSAAILVVDGESMAVRAYLGSLDVGDERRFGHVDMI
                     RAQRSPGSTLKPFLYGLAMDAGLIHSESLLQDVPRRYGDYRPGNFAAGFTGPVSASEA
                     LATSLNLPAVQLLEAYGPKRFAGELRGAGVPLALPAGAEPNLALILGGAGSRLEELVA
                     GYSAFARGGMAARPRLQPQDALYERRLLSPGAAWVVRRILSGQARPDRDPRAELVQRP
                     VLAWKTGTSYGFRDAWAVGVGPRHLIGVWIGRPDGTPVPGQFGLASAAPLLLQVHDLL
                     VNRDLQRGLAPPVQDVPASVGVA"
     gene            1847..2140
                     /locus_tag="VLF16_00615"
     CDS             1847..2140
                     /locus_tag="VLF16_00615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69404.1"
                     /translation="MDTESFFERLGEILGNFIRVLVEALTGFFRMIGQAGANFIDGLS
                     RSLGMDPNWVSILVLIIGLLLLVGAVRAFLRGSITWGLIVLLLALWTLSLLIG"
     gene            complement(2176..2709)
                     /locus_tag="VLF16_00620"
     CDS             complement(2176..2709)
                     /locus_tag="VLF16_00620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69405.1"
                     /translation="MPAAVVLPEHLHLLMILPGGDADYSSRVRRMKSLFVGVLKANEA
                     PLRFNARREADVWQRRFWEHLIRDEADFAAHVDYIHANPLKHGLVERVSDWPLSSFHR
                     YVQRGCCQSIGLVRVQLPSTGPESEGRPGFHPGYSLRGWGVMQSSSQRSWPFLRGRRL
                     KSPLAHVWERGGGEGRR"
BASE COUNT          506 a         1063 c         1008 g          465 t
ORIGIN      
        1 cggccacgcc gacactcgct ggcacgtcct gcaccggtgg cgccaggccg cgctggaggt
       61 cgcggttgac cagcagatcg tgcacctgca gcagcagcgg cgcggccgag gccaggccga
      121 actggccggg caccggggtg ccgtccggcc gaccgatcca caccccgatc agatggcgcg
      181 ggccgacgcc gacggcccag gcatcgcgaa agccgtagct ggtgccggtc ttccaggcca
      241 gcaccgggcg ctgcaccagt tcggcccgcg gatcgcggtc cggccgagcc tggccggaaa
      301 gaatgcgccg caccacccag gcggcgcccg gcgagagcag gcgccgttcg tacagcgcgt
      361 cctgcggctg caggcgtggc cgcgcggcca tgccgccgcg ggcgaaggcg ctgtagccgg
      421 ccaccagctc ctccaggcga ctgccggcgc cgccgaggat cagcgccagg ttcggctcgg
      481 cgccggccgg cagtgccagc ggcacgccgg caccccgcag ctcgccggcg aagcgcttgg
      541 gcccgtaggc ctcgagcagc tgcaccgcgg gcaggttgag cgaggtggcc agggcctcgc
      601 tggccgatac cgggccggtg aagccggcgg cgaagttgcc cgggcggtag tcgccgtagc
      661 gccgcggcac gtcctgcagc agcgactcgg aatggatcag cccggcgtcc atggccaggc
      721 cgtagaggaa gggcttgagg gtcgatccgg gcgagcgctg ggcgcggatc atgtcgacgt
      781 ggccgaagcg gcgctcgtcg cccacgtcca gcgaacccag gtaggcgcgc accgccatgc
      841 tctcgccgtc caccaccagg atggccgccg aggtgcgctc gggcaggcgc gcgcgccagc
      901 ccagcagcag gtcttccagg cgccgctgca agctggcgtc gagggtggtg cggatcagcg
      961 gcgggctgcc cgccacgttc agccgtcgcg ccagcagcgg tgccaggctc ggctcctggc
     1021 gcggcgccag cagcaccggc tcctgcagcg cctcgtccac ggtggtgggc gtccacacct
     1081 cgaactgggc taggcgctgt agcaccttgt cccgtgcggc ctgggcgcgt tccgggtgac
     1141 gatccgggcg cagccggctg ggcgcctggg gcagcacggc gagcagcgcc gcctcggcgc
     1201 gggtcagctg gctgggcggt ttgccgaggt aggcccagct ggccgccgcc acgccctgca
     1261 gggtgccgcc gaagggcgcg cgattcaggt acagggcgag gatctcgtcc ttggacaggt
     1321 gccactccag ctgcagggtg cgccacagct gcttgaactt gccgccgagg ctgcgctgat
     1381 gcgggtcgag caggcgtgct acctgcatcg acagggtgct gccgccggac accacgcgcc
     1441 cgccggccag gttctgccag gcggcgcgca ccagcgccag cgggttgacc ccggggtgcg
     1501 cacggaacca gcggtcctcg taggtcagca gcgcgtcgag gtaatagggc gacacctcgt
     1561 ccggcgtcac cggatagcgc cacacgccct cggcatcggc gaagcgccac agcggcgtgc
     1621 catcctcggc gagcaccacc cgagccaggc cgtcttccgg cagcggcagc gggaacagcc
     1681 ggtcggcgct ccagagcagc gccagcagga gcaacggcac ccacaaccag ggcctgcgca
     1741 acgcgcgcag cggtgacggt gccttcatga ccgtggacca cgccgatgga actcggctcg
     1801 cccaagcgca gcccaagctg gaggatcagc gcataaggaa ggatctatgg atactgagag
     1861 cttcttcgag cggctcggcg aaatactggg caacttcatt cgtgtcctgg tcgaggccct
     1921 gaccggcttc tttcgcatga tcggccaggc cggcgccaac ttcatcgacg gcctgtcccg
     1981 atcgctgggg atggacccga actgggtcag catcctggta ctgatcatcg gtctgctgtt
     2041 actggtcggc gccgttcgtg ccttcctccg cggctcgatc acctgggggc tgatcgtact
     2101 gctgctggca ttgtggacgt tgagtttgtt gattgggtga ggactcgggc agtttccgcg
     2161 acccattgcg ccttctcacc tccttccctc tcccccgccc ctctcccaca cgtgggcgag
     2221 gggtgacttc aatcgacggc cccgtagaaa tggccaactt ctttgcgatg aagactgcat
     2281 cactccccat ccgcgcagac tgtagcccgg atgaaatccg ggtctgccct cactctccgg
     2341 ccctgttgat ggaagctgca ccctcaccag cccaatcgac tggcaacagc cccgctgcac
     2401 atagcgatga aagctggaca atggccagtc gcttacccgc tcgaccaacc cgtgcttgag
     2461 cggattggca tggatgtagt ccacatgggc agcaaaatcc gcctcatcgc gaatcaagtg
     2521 ctcccagaag cgacgctgcc agacatctgc ctctcgcctg gcgttgaatc tgagcggagc
     2581 ctcgttagcc ttcagcacgc caacaaacaa cgacttcatg cggcgaaccc tcgacgaata
     2641 atcggcatca ccacccggca gaatcatcag cagatgcagg tgttcgggca gtacaaccgc
     2701 tgcgggcatg tcgaatggtc gctcctgcat tgtccgccac aacgatctcc gtagctcctc
     2761 cgcgtaacgc accagccaat cccgtgatcg gttccgcaaa gcgagagtca ggaagtaaca
     2821 ggcgccttca actctggcgc gtcgataatt caccacgacc agacctccat gtctgatgct
     2881 atggagtggt tcgcgcgcgg acgcccccgg atttcatccg ggctacggca gccctttgct
     2941 ttctaggggt tcatgcgcga acccgcccaa cttcacccgg gccacggctt gtagctggat
     3001 gaaatccggg aaacgccaat cagcgctcgt tgaccaccaa cc
//
LOCUS       DATIHC010000036         1847 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4806, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000036 DATIHC010000000
VERSION     DATIHC010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1847
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4806"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(60..862)
                     /locus_tag="VLF16_00625"
                     /pseudo
     CDS             complement(60..862)
                     /locus_tag="VLF16_00625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611116.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
     gene            1060..>1847
                     /locus_tag="VLF16_00630"
     CDS             1060..>1847
                     /locus_tag="VLF16_00630"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HSX69406.1"
                     /translation="MAKMTEHTIGIDISKTHLDVFRLEDQAARRFENAPRGFRALIRW
                     LGQTPVARIVFEPTGPYHRAFEAALSGKLPLVKVNPLQARRFAEACGTRAKTDAVDAR
                     LLARMGAALKLEPDAPDAENLVLIKNLQVARTALVKERTRLRNRSHLQLNPILKRQIK
                     ARLTLVERQLAELDAEIARHIACDKALERKREILCSIPGLGAIAAALILTFLPEIGTL
                     DRKQAGSLAGLVPHSRESGQWKGKSFISGGRKPLRDALYMPAFVA"
BASE COUNT          322 a          589 c          595 g          341 t
ORIGIN      
        1 atgtccccac gtctcgatga tgcggcagtt cgagattgcc gtaccttata ccaagcgccc
       61 taagcattga ccgcttctgc gtatttgcgc gtagcaattg atcggacgcg ctcggggtcg
      121 cctgcgaagg cgttccatgc gtcgcagcat cggtcgacga tgttgtcgta ggtgtcgaag
      181 accgtaatgg cgaggcggtt tgcccgcaga taggcccaga tgttctcgac cgggttcagc
      241 tccggtgcat agggcgggag cgtcacgatg gtgatgttgt ccgggatgcg cagggtgctg
      301 gagccatgcc agccagcacc gtccatcacg agcacggcgt gggcgcctgg tgcgacggct
      361 tttgcgattt cgacaaggtg ggcgttcatg gccgaggtgt cagcacgcgg catgatcagg
      421 gccgcggttg tggcgcgcgc cggacagacg gcgccgaaga tataggccca tgtgtagcgg
      481 gtatcgcgtg gcgcgcgagg gcgggttccc cgctcggccc aagtccgggt gagcgtcccc
      541 tgctggccca cgcgcgcctc gtcctggtac cacacctcca atggcctgcc gcgcgctgcc
      601 tctggcaggg cggcctttac tgtcgcggca aagttttttt gaatgcctct tgcgccaccg
      661 ggtcggactt agggtgctgg gggcgcaccg acaggcggcg aaagccgagg gccgccagct
      721 gtttgccgac cgtccgctcg tgcatgacca cgccaaagcg gtcctcgatc ttgcgcttga
      781 gatcgacaca gcgccagcgc accaccccat cggcttcaag gtcaggtcct tcccggacca
      841 tccgggccag ttccgccttc tgcttgtctt attcaggagg tggctcctga gggtatacag
      901 gagccactgc ccgccacgcc attcatggcg ggcagtggcg gcggttggat cgtcatctgc
      961 tgggtcagca aggaccgctt cggagtttga tcaaccgccg tcttcaccag gggcctgaac
     1021 ggatacgcgt gtttgcgcca cgcatgacaa gcataggaca tggcgaagat gactgaacat
     1081 accattggca tcgacatctc gaaaacccat ctcgacgtct tccggctgga agaccaggcg
     1141 gcgcggcggt tcgagaacgc gccccggggc ttccgggccc tgatccgttg gctcgggcag
     1201 acgccggtcg cccgcatcgt cttcgaaccg acagggcctt atcatcgggc ctttgaggcg
     1261 gcgctgtcgg gcaagctgcc gctggtcaag gtcaatccgc tgcaggcccg tcgctttgcc
     1321 gaagcgtgcg ggacgcgggc caagaccgat gccgtcgatg cacgcctctt ggcccggatg
     1381 ggggctgccc tgaagctgga accggatgcg cccgatgcgg agaacctagt tttgatcaaa
     1441 aacttgcagg tggcgcggac ggcactggtc aaggagcgaa cccgcctgcg caaccgcagc
     1501 catttgcaac tcaatccaat cctgaaacgc cagatcaagg cgcgcctgac cctcgtcgag
     1561 cgtcagctcg ccgagctcga tgccgagatt gcacgccata tcgcctgcga caaagccctg
     1621 gagcgcaagc gcgagatcct gtgctcgatc cccggcctcg gagccatcgc agccgcgctg
     1681 atcctcacct tcctgcccga aatcggcacc ctcgacagaa agcaggccgg aagtctcgca
     1741 ggccttgtcc cgcacagccg cgagtccggt cagtggaagg gaaagtcatt catcagcggc
     1801 gggcgaaagc ccctgcgtga cgcgctctac atgcctgcct tcgtggc
//
LOCUS       DATIHC010000037         1646 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30454, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000037 DATIHC010000000
VERSION     DATIHC010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1646)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1646)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1646
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30454"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..279)
                     /gene="eno"
                     /locus_tag="VLF16_00635"
     CDS             complement(<1..279)
                     /gene="eno"
                     /locus_tag="VLF16_00635"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252325.1"
                     /note="catalyzes the formation of phosphoenolpyruvate from
                     2-phospho-D-glycerate in glycolysis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HSX69407.1"
                     /translation="MAKIVDIKGREVLDSRGNPTVEADVILEGGIVGSACAPSGASTG
                     SREALELRDGDKSRYLGKGVLKAVANINGLIRDLLLGKDAREQKTLDLA"
     gene            complement(352..1197)
                     /gene="kdsA"
                     /locus_tag="VLF16_00640"
     CDS             complement(352..1197)
                     /gene="kdsA"
                     /locus_tag="VLF16_00640"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HSX69408.1"
                     /translation="MAQKIIKVGGIEIANDKPFVLFGGINVLESRDLAMQACEEYVRV
                     TEKLGIPYVFKASFDKANRSSVTSFRGPGLEEGMKIFEEVKKTFGVPVITDVHEPHQA
                     APVAEVCDIIQLPAFLSRQTDLVVAMAKTGAVINIKKAQFLAPQEMKHILRKCEEAGN
                     DQLILCERGSSFGYNNLVVDMLGFGIMKQFEYPVFFDVTHALQMPGGRADSAGGRRAQ
                     VTDLAKAGMSQGLAGLFLEAHPEPEQAKCDGPCALRLNKLEAFLSQLKQMDDLVKSFP
                     PIETA"
     gene            complement(1351..>1646)
                     /locus_tag="VLF16_00645"
     CDS             complement(1351..>1646)
                     /locus_tag="VLF16_00645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252327.1"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HSX69409.1"
                     /translation="QLMAGSNVRECYGQDVIVERHRHRYEVNNNLLPQLEAGGLKVSG
                     RSADGALVEVVEAPDHPWFVACQFHPEFTSTPRDGHPLFSGFVKAALKQASKA"
BASE COUNT          301 a          504 c          528 g          313 t
ORIGIN      
        1 ggccaggtcg agagtcttct gctcacgggc gtctttgccc agcagcaggt cgcggatcag
       61 gccgttgatg ttggccacgg ctttgagcac gcccttgccc aggtaacggc tcttgtcgcc
      121 atcgcgcagt tccagcgcct cacgggaacc ggtggaagca ccggacggcg cgcaggcgct
      181 accgacgata ccgccttcga ggattacatc ggcttctacg gtggggttac cacgggagtc
      241 gagaacctcg cggcccttga tgtcgacgat ttttgccatc gcgtatagca ctccaaatgt
      301 ttacggaagg gtacggccat cgggcgcgca ctttaccgga gaaatggccg atcaggcagt
      361 ctcgatcggc gggaagctct tgaccaggtc atccatttgc ttgagctggg acaggaacgc
      421 ctccagcttg ttcaggcgca gcgcgcaggg gccgtcgcac ttggcctgct caggctccgg
      481 atgggcctcg aggaacaggc cggccaggcc ctggctcatg ccggccttgg ccaggtcggt
      541 gacctgggcg cggcggccgc cggcggagtc ggcgcgaccg cccggcatct gcagggcatg
      601 ggtcacgtcg aagaacaccg ggtactcgaa ctgcttcatg atgccgaagc cgagcatgtc
      661 caccaccagg ttgttgtaac cgaaggagga gccacgctcg cagaggatca actggtcatt
      721 accggcctct tcgcatttgc gcagaatgtg cttcatctcc tgcggggcga ggaactgggc
      781 cttcttgatg ttgatcaccg cgccggtttt ggccatggcc accaccaggt cggtctgccg
      841 cgaaaggaag gccggaagct ggatgatgtc gcacacctcc gccaccgggg cggcctggtg
      901 cggctcgtgg acatcggtga tcaccggcac gccgaaggtc ttcttcactt cctcgaagat
      961 cttcatgccc tcttccaggc ccgggccgcg gaaggaggtg acggaggaac ggttggcctt
     1021 gtcgaagctg gccttgaaca cgtacgggat gccgagcttc tcggtgaccc gcacgtactc
     1081 ctcgcaggcc tgcatagcca ggtcgcgcga ctccagcacg ttgatgccgc cgaacaggac
     1141 aaacggcttg tcgttggcga tctcgatgcc gccgaccttg atgatcttct gagccatata
     1201 cctttcctta gagtctgttc atgctctcgc gagctagagc catgcaaggc gaaaacaggt
     1261 gaggaagcgc agtttaccga gagtaaatga gcattccgag cctgttttca acgcagcagg
     1321 gccgacgcgc agcagagcat ggactgactc ttatgccttg ctggcctgtt tcagagctgc
     1381 cttgacgaaa ccactgaaca gcgggtggcc gtcacgcggg gtggaggtga actccgggtg
     1441 gaactggcag gcgacgaacc acgggtgatc cggggcctcg accacttcca ccagggcacc
     1501 atcggcggag cgaccgctga ccttgaggcc gccggcctcc agctgcggca gcaagttgtt
     1561 gttcacctcg tagcggtggc gatggcgctc gacgatcaca tcctggccat agcactcgcg
     1621 cacgttggag ccggccatca gctggc
//
LOCUS       DATIHC010000038         1598 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30463, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000038 DATIHC010000000
VERSION     DATIHC010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30463"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..582)
                     /locus_tag="VLF16_00650"
     CDS             complement(<1..582)
                     /locus_tag="VLF16_00650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003253204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family DNA-binding transcription
                     regulator"
                     /protein_id="HSX69410.1"
                     /translation="MSKRNTPQRRHAILALLNEQGEVVVDALAQHFATSEVTIRKDLA
                     ELEKNGLLLRRYGGAVPMPQELIGEPAQPVSRHKQVIARAAVGLIREHARIIIDSGST
                     TAAMIPQLGRKPGLVVMTNSLNVANALRDIEHEPVLLMTGGTWDPHSESFQGQVAEQV
                     LRSYDFDQLFIGADGIDLERGTTTFNELLGLSRV"
     gene            complement(695..>1598)
                     /gene="glmU"
                     /locus_tag="VLF16_00655"
     CDS             complement(695..>1598)
                     /gene="glmU"
                     /locus_tag="VLF16_00655"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003977 - UDP-N-acetylglucosamine
                     diphosphorylase activity [Evidence IEA];
                     GO_function: GO:0019134 - glucosamine-1-phosphate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HSX69411.1"
                     /translation="ASDAQRAIREGNTGILAVPGKRLGDWLGRLSNSNAQGEYYLTDV
                     IAMAVADGLVVATETARDEMEVLGANDRIQLSQLERHYQQRAARALMAQGVTLLDPAR
                     FDLRGEATMGRDVLIDVNVILEGKVVVEDGVQIGPNCVIKDSILRRGAIVKANSHLEG
                     AEVGEGADCGPFARLRPGAKLGAKAHVGNFVELKNAVLGEGAKAGHLSYLGDAEIGAR
                     TNIGAGTITCNYDGANKHRTVMGEDVFIGSNSSIVAPVTLGDGATTGAGSTVTQDVPA
                     AALAVGRAKQRNIEGWKRPQKTPE"
BASE COUNT          262 a          509 c          535 g          292 t
ORIGIN      
        1 gacccttgag aggcccagca gctcgttgaa ggtggtggtg ccacgttcca ggtcgatgcc
       61 atcggcgccg atgaacagct ggtcgaagtc gtaggagcgc agcacctgct cggcgacctg
      121 accctggaag gattcggagt gcgggtccca ggtaccgccg gtcatcagca gcaccggttc
      181 atgctcgatg tcgcgcaggg cattggccac gttcagcgag ttggtcatca ccaccaggcc
      241 gggcttgcgg ccgagctgcg ggatcattgc cgccgtggtg ctaccgctgt cgatgatgat
      301 gcgcgcatgc tcgcggatca ggccgaccgc agcacgggcg atcacctgct tgtgacggga
      361 gacgggctgg gccggctcgc cgatcagctc ctgcggcatg ggcacggcgc cgccgtagcg
      421 acgcagcagc agaccgttct tctccagctc ggccagatcc tttcgaatcg taacttcgga
      481 cgtggcgaaa tgctgagcca gggcatccac gaccacctcg ccctgctcgt tgagcaaggc
      541 gagaatcgcg tggcggcgct gaggagtgtt gcgtttcgac atttaagttt cgattcgaaa
      601 gataggtgcg cgaatcaaaa cctaatgaaa gctaacggtc aagcgctgga tggaaaaagg
      661 cggccagggc cgccttctat tcaatcgctt cggactactc gggagtcttc tgcgggcgct
      721 tccagccttc gatattgcgc tgcttggcgc ggccgacggc cagggcggcg gccggtacat
      781 cctgggtcac cgtggagccg gcgccggtgg tggcgccatc acccaaggtg accggggcga
      841 cgatggagct attggagccg ataaacacgt cctcgcccat caccgtcctg tgcttgttgg
      901 cgccatcgta gttgcacgta atggtgccgg cgccgatgtt ggtgcgcgcg ccgatctcgg
      961 catcgcccag gtagctcagg tggccggcct tggcgccctc gcccagcacg gcgttcttca
     1021 gctcgacgaa gttgccgacg tgagccttgg caccgagctt ggcgcccgga cgaaggcggg
     1081 cgaacggacc acaatcggcg ccctcgccca cttcggcacc ttccaggtgg ctgttggctt
     1141 tgacgatggc gccgcggcgc aggatggaat ccttgatcac gcagttcggg ccgatctgca
     1201 caccatcctc gaccactacc ttgccctcga ggatgacgtt gacgtcgatc agcacatcgc
     1261 ggcccatggt cgcctcgccg cgcaggtcga agcgtgccgg gtccagcagg gtcacgccct
     1321 gggccatcag agcgcgggcg gcgcgctgct ggtaatggcg ctcgagctgc gacagctgga
     1381 tgcgatcgtt ggcgccgagc acttccatct cgtcccgggc cgtctcggtg gccaccacca
     1441 agccgtcggc caccgccatg gcgatgacgt cggtgaggta gtactcgccc tgggcgttgc
     1501 tgttggacag gcgacccagc cagtcgccca ggcgcttgcc cggtacggcg agaatcccgg
     1561 tattgccttc gcggatggcg cgctgcgcgt cgctggca
//
LOCUS       DATIHC010000039         1890 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4821, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000039 DATIHC010000000
VERSION     DATIHC010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1890
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4821"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1349
                     /gene="rpoD"
                     /locus_tag="VLF16_00660"
     CDS             <1..1349
                     /gene="rpoD"
                     /locus_tag="VLF16_00660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HSX69412.1"
                     /translation="YIDADDGSLPAEELEPQLKEASAEAKDDEEEDEESDSDSDDEGD
                     GGPDPEEAARRFGAVAEQLEKARKALKKHGRGSKQADKEQQLLAELFMPIKLVPKQFE
                     ALVERVRGSLDQVRSQERAIMQLCVRDARMPRADFLKLFPGNEVDTAWTAGLAKGKAK
                     YAEAIGNLQGDIQRCQEKMAAIEADAGLLIAEIKDINRRMSIGEAKARRAKKEMVEAN
                     LRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITR
                     SIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLK
                     IAKEPISMETLIGDDEDSHLGDFIEDSTMQSPIEVATVESLKEATREVLAGLTAREAK
                     VLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLDE"
     gene            1433..>1890
                     /locus_tag="VLF16_00665"
     CDS             1433..>1890
                     /locus_tag="VLF16_00665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011531825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HSX69413.1"
                     /translation="MSRLLAILLSCLACWACPAAALELSSDEQAWLAEHPQLHLGIDA
                     SWPPFEFRDDEGRYSGLSAAYVELIEKRLQVRMLPVEPSSWSEVLTRARAGRLDLLPG
                     VMSTPERQRDLAFTRPYLDFPIVILARLDGPQPRRLEQLYGLKVAVVEDYA"
BASE COUNT          380 a          643 c          599 g          268 t
ORIGIN      
        1 gctacatcga cgcggatgac ggcagcctgc cggccgagga actcgagccc cagctgaagg
       61 aagccagcgc cgaggccaag gacgacgaag aagaagacga ggaaagcgac agcgattccg
      121 acgacgaagg cgacggcggc ccggacccgg aagaagcggc acgccgcttc ggcgcggtgg
      181 ccgagcagct cgagaaggcc cgcaaggcgc tgaagaagca cggccgcggc agcaagcagg
      241 cggacaagga gcagcagctc ctcgccgagc tgttcatgcc gatcaagctg gtgccgaagc
      301 agttcgaggc cctggtcgag cgcgttcgtg gctccctgga ccaggtccgt tcccaggaac
      361 gcgccatcat gcagctgtgc gtgcgtgacg cccgcatgcc gcgcgccgac ttcctcaagc
      421 tgttccccgg caacgaagtc gacaccgcct ggaccgccgg tctggcgaag ggcaaggcca
      481 agtacgccga agccatcggc aacctgcagg gcgatatcca gcgctgccag gaaaagatgg
      541 ccgcgatcga ggccgacgcc ggcctgctga tcgccgagat caaggacatc aaccgtcgca
      601 tgtccatcgg tgaagccaag gctcgccggg cgaagaagga aatggtcgag gccaacctgc
      661 gtctcgtgat ctccatcgcc aagaagtaca ccaaccgcgg cctgcagttc ctcgacctga
      721 tccaggaagg caacatcggc ctgatgaagg cggtggacaa gttcgaatac cgccgcggct
      781 acaagttctc gacctacgcc acctggtgga tccgccaggc gatcacccgc tcgatcgccg
      841 accaggcgcg caccatccgt attccggtgc acatgatcga gacgatcaac aagctcaacc
      901 gcatctcccg ccagatgctc caggagatgg gccgcgagcc gactccggag gagctgggcg
      961 agcgcatgga gatgcccgag gacaagatcc gcaaggtact gaagatcgcc aaagagccga
     1021 tctccatgga gacgctgatc ggcgacgacg aagattcgca cctgggcgac ttcatcgagg
     1081 actccaccat gcagtcgccg atcgaggtgg ccaccgtgga aagcctcaag gaagcgaccc
     1141 gcgaagtcct ggccgggctc accgcccgcg aagccaaggt gctgcgcatg cgcttcggca
     1201 tcgacatgaa caccgaccac accctcgagg aagtcggcaa gcagttcgat gtcacccgcg
     1261 agcgtattcg tcagatcgag gccaaggcgc tgcgcaagtt gcgccatccg actcgcagcg
     1321 agcaccttcg ctcgttcctc gacgagtgat ggcaaaaccc cggcacaggc cggggttttt
     1381 gcttctgcgc gaactacact gaaagcatct cccacgctcc cggacccgtc gcatgtcgcg
     1441 tctgctggcc attctcctgt cgtgtctggc gtgctgggcg tgcccggcgg cggcgctcga
     1501 gctcagctcg gacgagcagg cctggctggc cgagcatcca cagctgcacc tgggcatcga
     1561 cgcttcctgg ccgcctttcg agttccgtga cgacgagggc cgctacagcg gcctgagcgc
     1621 cgcctacgtc gaactcatcg aaaagcgcct gcaggtgcgc atgctgccgg tggagccgag
     1681 cagctggagc gaggtgctga cccgcgccag ggccggtcgc ctggacctgc tgccgggcgt
     1741 gatgtccacg cccgaacgcc agcgcgacct ggccttcacc cgcccctacc tcgacttccc
     1801 catcgtcatc ctcgcccgcc tcgacggccc gcagccgcgc cggctcgagc agctgtacgg
     1861 cctcaaggtc gccgtggtcg aggattacgc
//
LOCUS       DATIHC010000040         1610 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_9449, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000040 DATIHC010000000
VERSION     DATIHC010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1610
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9449"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..969
                     /locus_tag="VLF16_00670"
     CDS             <1..969
                     /locus_tag="VLF16_00670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014820711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin dinucleotide binding
                     domain-containing protein"
                     /protein_id="HSX69414.1"
                     /translation="ARHPLHLNTGRLRDQWHGMSRTGTAARLFGHAPEAVLSLHPDEL
                     RQRGLQAGELIHLRSRRGGLILPVQADDALRPGQAYLPMHWGDRFLKGLGTNVLTQPA
                     FDPLSKQPELKISSVDVARAELPWQFFALIEGDVQSRFEALRPLFERFAYASLTPTGR
                     EQRPALLIKAAAEAAPDADLLAEIDSLLGVDRGPVLAYDDAKRRVGKRVRIEDGRIVA
                     VRLAGETAARDWLKGLWEQGSTDADLRRWLLAPLATPPGGGMKASKVLCNCMNVSQDA
                     VCAGIERGLDLDGLKRELKCGTSCGSCVPEIKRLLVTHVAAVAVEA"
     gene            981..>1610
                     /gene="cobA"
                     /locus_tag="VLF16_00675"
     CDS             981..>1610
                     /gene="cobA"
                     /locus_tag="VLF16_00675"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003240038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004851 - uroporphyrin-III
                     C-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0019354 - siroheme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HSX69415.1"
                     /translation="MNAKVWLVGAGPGDPELLTLKAVKALQQADIVMIDDLVNPAVLE
                     HCPDARIVPVGKRGGCRSTPQAFIHRLMLRYARQGKCVVRLKGGDPCIFGRGSEEADW
                     LTTHGVDVEMVNGITAGLAGATHCGIPLTLRGVARGVTLVTAHTQDDSSLNWQALAQG
                     GTTLVVYMGVAKLPEIRESLLAGGMRADMPVAMIENASLPQQRECRSTLA"
BASE COUNT          265 a          572 c          549 g          224 t
ORIGIN      
        1 gcccgtcatc cgctacatct gaacaccgga cgtctgcgcg accagtggca cggcatgagc
       61 cgcaccggca ccgccgcacg actgttcggc cacgcccccg aggcggtgct gagcctgcac
      121 ccggacgagc tgcgccagcg cggcctgcag gccggcgagc tgatccacct gcgcagccgc
      181 cgcggcggcc tgatcctgcc ggtgcaggcc gacgacgcgc tacgtcctgg ccaggcctac
      241 ctgccgatgc actggggcga ccgcttcctc aagggcctgg gcaccaacgt gctgacccag
      301 ccggccttcg acccgctgtc caagcagccg gaactgaaga tcagcagcgt ggacgtggcc
      361 agggccgagc tgccctggca gttcttcgcc ctgatcgaag gcgatgtgca gagccgcttc
      421 gaggcgctgc gcccactgtt cgaacgtttc gcctacgcca gcctgacacc gaccggtcgc
      481 gagcagcgcc cggccctgct gatcaaggct gctgccgaag cggcgccaga tgccgacctg
      541 ctggccgaga tcgacagcct gctcggcgtc gaccggggcc cggtgctggc ctatgacgac
      601 gccaagcgcc gcgtgggcaa gcgcgtgcgc attgaggacg ggcgcatcgt cgccgtgcgt
      661 ctggctggtg aaaccgccgc ccgcgactgg ctcaagggcc tgtgggaaca gggcagcacc
      721 gatgccgacc tgcgccgctg gctgctcgcc ccgctggcca ccccgccggg tggcggcatg
      781 aaagctagca aggtgctgtg caactgcatg aacgtcagcc aggacgcggt gtgcgccggt
      841 atcgagcggg gcctggacct ggacgggctc aagcgcgaac tgaagtgcgg caccagctgc
      901 ggctcgtgcg tgccagaaat caaacgactg ctggtcaccc atgtggccgc cgtcgccgtg
      961 gaagcctgag gagtagaacc atgaatgcaa aagtctggct ggtgggcgca ggccctggcg
     1021 atccggaatt gctgaccctc aaggcggtga aggccctgca acaggccgat atcgtgatga
     1081 tcgacgacct ggtcaacccg gccgtgctgg agcactgccc ggatgcccgc atcgtgccgg
     1141 tgggcaagcg cggcggctgc cgctccaccc cgcaggcctt catccatcgc ctgatgctgc
     1201 gctatgcgcg ccagggcaag tgcgtggtgc gcctgaaagg cggcgacccg tgcatcttcg
     1261 gtcgcggcag cgaggaagcc gactggctca ccacacacgg cgtggacgtg gagatggtca
     1321 acggcatcac cgccggcctg gccggtgcca cccactgcgg catccccctg accctgcgcg
     1381 gcgtggcccg cggcgtgacc ctggtcaccg cccacaccca ggacgacagc agcctcaact
     1441 ggcaggccct ggcccagggc ggcaccaccc tggtggtgta catgggggtg gccaagcttc
     1501 cggaaatccg cgaaagcctg ctggccggcg gcatgcgcgc cgacatgccg gtcgcgatga
     1561 tcgaaaacgc ctcgctgccg cagcagcgcg agtgccgcag caccctggcc
//
LOCUS       DATIHC010000041         2940 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18798, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000041 DATIHC010000000
VERSION     DATIHC010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2940
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18798"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..600)
                     /locus_tag="VLF16_00680"
     CDS             complement(<1..600)
                     /locus_tag="VLF16_00680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase-related protein"
                     /protein_id="HSX69416.1"
                     /translation="MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQ
                     FKDCFLGLEKRAYTRATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFK
                     RDAIAWAWELLTEVWKLPKDKLLVTIYHTDDEAFAIWNEVVGLPPERIIRIGDNKGAP
                     FASDNFWQMADTGPCGPCTEIFYDHGDKIWGGPPGSAEED"
     gene            complement(769..1761)
                     /gene="astE"
                     /locus_tag="VLF16_00685"
     CDS             complement(769..1761)
                     /gene="astE"
                     /locus_tag="VLF16_00685"
                     /EC_number="3.5.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009017 - succinylglutamate desuccinylase
                     activity [Evidence IEA];
                     GO_process: GO:0006527 - arginine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate desuccinylase"
                     /protein_id="HSX69417.1"
                     /translation="MLALGKLLELTLAGREPTEKIQLTREGARLHWLAEGVLEVTPPA
                     QEDSGLDLLLSAGIHGNETAPIELLDRLVQVVASGQLLPRARILFLFGNPEAMRRGER
                     YVEQDINRLFDGRHEQSSGSEALRANELERHAAVFFSKEGRARLHYDLHTAIRGSKIE
                     QFALYPYVEGREHSRAELARLNAAGIDAVLLQRKTGITFSSYTYARLGAEAFTLELGK
                     ARPFGQNQLVNLDLLEKRLRELIENCEPAGDSLEGLLLFAVSREVIKHSDAFKLHLPD
                     DIENFTELETGFLLAEDIAGTRWLVEEQGARIIFPNPKVKNGLRAGILIVPAEL"
     gene            complement(1781..2065)
                     /locus_tag="VLF16_00690"
     CDS             complement(1781..2065)
                     /locus_tag="VLF16_00690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013714884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase II"
                     /protein_id="HSX69418.1"
                     /translation="MSQALQLVLEDTDGTQLETSCTRFAVIWQGKEVWIQAVGDQLLI
                     GVDVEEGDTEYANLLLRPQATNLVGLQLEMEPADLGGDDEDHVHGPDCNH"
     gene            complement(2077..>2940)
                     /locus_tag="VLF16_00695"
     CDS             complement(2077..>2940)
                     /locus_tag="VLF16_00695"
                     /EC_number="3.5.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015476469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009015 - N-succinylarginine dihydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006525 - arginine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-succinylarginine dihydrolase"
                     /protein_id="HSX69419.1"
                     /translation="HAALPAVGQFGDEGAANHTRFCKGYGEAGVEFFVFGRSAFDSRF
                     PAPQRYPARQTLEACQAVARLHGLSEEGVVYAQQNPAVIDQGVFHNDVISVGNGEVLF
                     YHQDAFLDTDKVLAELGDKLARRGGNFQAVRVPASAVSVEDAVRSYLFNSQLLTRADG
                     GMLLIVPEECRNNANVWSYLSELTSGSGPIREVKVFDLKQSMQNGGGPACLRLRVALN
                     QQELAAVNPGVVMTQALFETLNAWVDKHYRDRMAESDLADPQLLIECRTALDELTQIL
                     KLGSVYPFQLV"
BASE COUNT          473 a          940 c          998 g          529 t
ORIGIN      
        1 atcttcttcc gcgctgcccg gagggcctcc ccagatcttg tcgccgtgat cgtagaagat
       61 ctcggtgcag gggccgcagg ggccggtgtc ggccatctgc cagaagttgt cggaggcgaa
      121 cggcgcgccc ttgttgtcgc cgatgcggat gatgcgctcg ggcggcaggc cgacgacctc
      181 gttccagatg gcgaaggctt cgtcgtcggt gtggtagatg gtgacgagca gcttgtcctt
      241 cggcagcttc cagacttcgg tcagcagctc ccacgcccag gcgatggcgt cgcgcttgaa
      301 gtagtcgccg aagctgaagt tgcccagcat ctcgaagaag gtgtggtggc gcgcggtgta
      361 gccgacgttc tccagatcgt tgtgcttgcc gccggcacgc acgcacttct ggctggtggt
      421 ggcgcgggtg taggcgcgct tttccaggcc gaggaagcag tccttgaact ggttcatgcc
      481 ggcattggtg aacagcaggg tcgggtcgtt cgccgggatc agcgaactgg aggcgacgcg
      541 ggtgtgcccc ttctcttcga agaagcggag gaaggcttca cggatttctg cgcttttcat
      601 ctatgtcatc caggcaaacg gcggccacgg cagagccggc aaagggccgc attatatcgg
      661 ccctgcgcgg cggggacagc ccgcccgaag ggaatttgga tagaaaacga ctatcgagcg
      721 gcgtgacggt cacggagcga gcgggcggat gcgcccccgc cccgcagatc agagctcggc
      781 agggacgatc aggatgccgg cgcgcaggcc gttcttgacc ttggggttgg gaaagatgat
      841 gcgcgcaccc tgttcttcga ccagccagcg cgtgccggcg atatcctcgg ccagcagaaa
      901 gcccgtctcc agctcggtga agttctcgat gtcgtcgggc aggtgcagct tgaaggcatc
      961 gctgtgcttg atcacctcgc gggacacggc gaacagcagc aggccttcca gcgagtcgcc
     1021 ggccggctcg caattctcga tcagctcgcg caggcgcttc tccagcaggt cgaggttgac
     1081 cagctggttc tgcccgaatg gccgcgcctt gcccagctcc agggtgaagg cctcggcgcc
     1141 gaggcgcgca taggtgtagg agctgaaggt gatgccggtc ttgcgctgca gcagcaccgc
     1201 gtcgatgccg gccgcattca ggcgggccag ctcggcgcgt gagtgctcgc ggccttcgac
     1261 atagggatag agggcgaact gctctatctt cgagccacgg atcgcggtgt gcaggtcgta
     1321 gtgcagccgc gcacggcctt ccttgctgaa gaacaccgcg gcatgtcgct ccagctcgtt
     1381 ggcgcgcagc gcctcggagc cgctgctctg ctcgtggcga ccgtcgaaca gacgattgat
     1441 gtcctgctcc acatagcgct cgccgcggcg catggcctcg gggttgccga acaggaacag
     1501 gatgcgcgcc ctcggcagca gctggccgga ggcgaccacc tgcaccaggc ggtcgagcaa
     1561 ctcgatcggc gccgtctcgt tgccgtggat gccggccgac agcagcagat cgagaccgct
     1621 gtcctcctgg gcgggcggcg tcacttccag cacgccctcg gccagccagt gcaggcgcgc
     1681 gccctcgcgg gtcagctgaa tcttctcggt cggctcgcgg ccggcgaggg tgagttcgag
     1741 cagtttgccg agggcgagca tgggattacc tcagtcgggc tcaatgattg cagtcgggac
     1801 cgtgcacatg atcctcatcg tcgccgccca gatcggccgg ctccatttcc agctgcaggc
     1861 cgaccaggtt ggtagcctgc gggcgcagca gcaggttggc gtactcggtg tcgccctcct
     1921 ccacgtcaac gccgatcagc agttgatcac ccaccgcctg gatccacact tccttgccct
     1981 gccagatcac ggcgaagcgc gtgcaggagg tttccagctg ggtgccatcg gtgtcttcga
     2041 ggacgagttg cagggcttgg gacatggtcg ggactctcac acgagttgga aggggtagac
     2101 ggagcccagt ttaaggatct gcgtcagttc atccaatgcc gtacggcatt cgatcagcag
     2161 ctgcgggtcg gccaggtcgc tttcggccat gcggtcgcgg tagtgcttgt cgacccaggc
     2221 attgagcgtc tcgaacaggg cctgggtcat caccacaccc ggattcaccg cggccagctc
     2281 ctgctgattg agcgccacgc gcaggcgcag gcaggccggg ccgccgccgt tctgcatgct
     2341 ctgcttgagg tcgaagacct tcacctcgcg gatcgggccg ctgccgctgg tgagctcgct
     2401 caggtagctc cacacgttgg cgttgttgcg gcattcctcc ggcacgatca gcagcatgcc
     2461 gccatcggcg cgggtcagca gctggctgtt gaacaggtag gagcgcactg cgtcctcgac
     2521 gctcacggcg ctggccggca cacgcacggc ctggaagttg ccgccccggc gagccagctt
     2581 gtcgcccagt tcggcaagga ccttgtcggt gtcgaggaag gcgtcctggt gatagaacag
     2641 cacctcgccg ttgccgaccg agatcacgtc gttgtggaac acgccctgat cgatcaccgc
     2701 cggattctgc tgggcgtaga ccacgccctc ctcgctcagc ccatgcaggc gggccaccgc
     2761 ctggcaggcc tccagagtct gccgcgccgg gtaacgttgc ggcgccggaa agcggctgtc
     2821 gaaggcgctg cggccgaaca cgaagaactc cacgccggcc tcgccatacc ccttgcagaa
     2881 gcgcgtgtgg ttggccgcgc cctcgtcgcc gaactggccc acggccggca gcgccgcgtg
//
LOCUS       DATIHC010000042         6061 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11783, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000042 DATIHC010000000
VERSION     DATIHC010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6061
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11783"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            25..702
                     /locus_tag="VLF16_00700"
     CDS             25..702
                     /locus_tag="VLF16_00700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003293502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HSX69420.1"
                     /translation="MWELVKSGGWMMLPIILCSIAAAGIIAERLWTLRASRIAPPHLL
                     GQVWLWIKEKKLTNDKLKELRANSPLGQVLAAGLANSKHGREIMKECIEEAAARVIHE
                     LERYLNALGTIAGVAPLLGLLGTVLGMIDIFSAFMGSNMANAAVLAGGIAKALITTAA
                     GLFVAIPALFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDMGNGAAPVATAKDT
                     RKEGKKA"
     gene            699..1127
                     /locus_tag="VLF16_00705"
     CDS             699..1127
                     /locus_tag="VLF16_00705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015276529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HSX69421.1"
                     /translation="MKFRRKPRENVEINLASLIDVVFILLLFFVVTTTFTRETQLKVD
                     LPEAASGTPPEETALKQLEVLISPEGSYSLNGQPLLKSDLEGLMAALGKESGGDNSLP
                     LAISADAKTPHQAVITAMDAAGKLGFSHLRITTVEAEAKP"
     gene            1124..2128
                     /gene="lpxK"
                     /locus_tag="VLF16_00710"
     CDS             1124..2128
                     /gene="lpxK"
                     /locus_tag="VLF16_00710"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020192791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009029 - tetraacyldisaccharide 4'-kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HSX69422.1"
                     /translation="MSLADRLTAAWYHGHPALILLRPLEWLYRRVVQGRRRAFLAGKG
                     DIYRAPVPVLVVGNVTVGGTGKTPMILWLIEHCRARGLRVGVVSRGYGATPPQLPWRV
                     RADDQSSHAGDEPLLIVQRSGVPMMIDPQRARAVQALVEQEELDLILCDDGLQHYRLA
                     RDIELVLVDAARGLGNGRCLPAGPLREPTERLAEVDAVLRNGASEDGEGGYALQLRPS
                     ALVNLRSGERVGLGHFPPGQQLHAVAGIGNPQRFFNTLEALNWRPIAHPFADHASFSP
                     EALQFSPKLPLVMTDKDAVKCRAFAAADWWYLAVDAQPSSAFATWLDAKLDSLLTAKR
                     "
     gene            2168..2353
                     /locus_tag="VLF16_00715"
     CDS             2168..2353
                     /locus_tag="VLF16_00715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HSX69423.1"
                     /translation="MDPKLLDILACPVCKGPLQLSEDKTELISKGAGLAYPIRDGIPV
                     MLESEARTLTVDERLDK"
     gene            2354..3115
                     /gene="kdsB"
                     /locus_tag="VLF16_00720"
     CDS             2354..3115
                     /gene="kdsB"
                     /locus_tag="VLF16_00720"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003456201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008690 - 3-deoxy-manno-octulosonate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HSX69424.1"
                     /translation="MTAFTVVIPARYASSRLPGKPLQDIAGKPMVQHVWEQAKQSGAA
                     RVVVATDDARILEACQGFGAEVLMTRVDHNSGTDRLAEVASQLGLASDAIVVNVQGDE
                     PLIPPSIIDQVAANLAANPQAGIATLAEPIDDVAALFNPNVVKVVADKYGLALTFSRA
                     PLAWARDAFAKSRDVLPEGVPYRRHIGIYAYRAGFLHDFVAWGPCWLEDTECLEQLRA
                     LWHGVRIHVADALEAPAAGVDTPEDLERVRRLLGA"
     gene            3115..3579
                     /locus_tag="VLF16_00725"
     CDS             3115..3579
                     /locus_tag="VLF16_00725"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004725 - protein tyrosine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase"
                     /protein_id="HSX69425.1"
                     /translation="MRVLFVCMGNICRSPTAEGVFRHRLQGAGLHERVTVDSAGTGDW
                     HVGKAPDGRSSQAALSRGYDLSSLRARQVQREDFQRFDLILAMDHDNLARLQGLRPGS
                     GGADLDLFLRRYQLALDEVPDPYYGGADGFEQVLDLIEQASDALLAEIRGRL"
     gene            3576..4595
                     /gene="murB"
                     /locus_tag="VLF16_00730"
     CDS             3576..4595
                     /gene="murB"
                     /locus_tag="VLF16_00730"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012018153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008762 - UDP-N-acetylmuramate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HSX69426.1"
                     /translation="MSLHLHESVSLKPFNTFGVEAKARLFAETRSDDEVREALAEAER
                     LGLPLLPVGGGSNLLLTGDVDALVLRMASRGLRILEDDGERVLVEAEAGEPWHPFVLW
                     SLEQGLSGLENLSLIPGTVGAAPMQNIGAYGVEIRDVFAGLTALDRRSGELREFGLEE
                     CAFAYRDSLFKQQPGRWLILRVRFALSRKARLRLDYGPVRQRLQQEGIETPTAHDVSR
                     AICAIRSEKLPDPAELGNAGSFFKNPVVPIELAERIRAEHADLVSYPAGEGLAKLAAG
                     WLIERAGWKGFREGDAGVHRLQALVLVNHGAATGSELLALARRIQADIERRFGVALEI
                     EPNVI"
     gene            complement(4679..>6061)
                     /locus_tag="VLF16_00735"
     CDS             complement(4679..>6061)
                     /locus_tag="VLF16_00735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013791973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E/G"
                     /protein_id="HSX69427.1"
                     /translation="VKGLVSLFAGKEEEPQPTAEAKPAERKPRGDERRNGRQQNRRDG
                     RGRDRSERGERNERSDRGEREERKPREERQPREAREERQPREERQERQPREPREPREP
                     RGEGQENRRERSERQPREGREERRRELREPLDAGNAEAQEQRAERKPREERQPRPPRE
                     ERQPRPEQLSTEAAEEEVLENAEQLEEGQDADEGGDRPRRRSRGQRRRSNRRERLRDA
                     DGNPIVEEGEEAAAEGTEGATTTSAEGAAVAAAAAVTFVAEQALAETEQAPVAEQPQQ
                     AEASVAAEEPSQQPEVRVVAEEPAAPVVASEPVTVETAPVDTAPVEPAVAEPVVETPA
                     APVVEEAPATAPAQASGGRAPNDPREVRRRQQEAARLAAAAEAAPKVEAVEAVEPVAE
                     PAAAPMESVVEAAPVETVEEPVAEAPEAILEIPQVTQSEPSDETVAEQQAEADTEAAP
                     ATEDETKPQH"
BASE COUNT          855 a         2111 c         2093 g         1002 t
ORIGIN      
        1 cttttcggag ggggaatcga taccgtgtgg gagctggtca aatctggcgg ctggatgatg
       61 ctgccgatca ttctgtgttc catcgccgct gccggcatca tcgccgagcg cctctggacc
      121 ctgcgcgcca gccgtatcgc gccgccccat ctgctgggcc aggtatggct gtggatcaag
      181 gaaaagaagc tcaccaacga caagctcaag gagctgcgcg ccaactcccc gctggggcag
      241 gtgctcgccg cgggcctggc caactccaag catggtcgcg agatcatgaa ggagtgcatc
      301 gaagaggccg ccgcccgcgt catccatgag ctggagcgct acctcaacgc cctcggcacc
      361 atcgccggcg tggcgccgct gctcggcctg ctcggcaccg tgctgggcat gatcgacatc
      421 ttcagtgcct tcatgggttc caacatggcc aacgccgcgg tgctcgccgg cggtatcgcc
      481 aaggccctga tcaccaccgc cgccggcctg ttcgtggcca tcccggcgct gttcttccac
      541 cgcttcctgc agcgtcgcgt cgacgagctg gtggtcggca tggaacagga ggcgatcaag
      601 ctggtggaag tggtacaggg cgaccgtgac gtcgacatgg gcaacggcgc cgcgccggtt
      661 gccaccgcca aggacacccg caaagagggc aagaaggcgt gaagttccgg cgcaaaccgc
      721 gggagaacgt cgagatcaac ctggcgtcgc tgatcgacgt ggtattcatc ctgctgctgt
      781 tcttcgtggt caccaccacc ttcacccgcg agacccagct caaggtcgac ctgcccgagg
      841 ccgccagcgg cacgccgccg gaagagaccg cgctgaagca gctggaagtg ctgatcagcc
      901 ccgagggcag ctactcgctg aacggccagc cgttgctcaa gagcgacctg gaaggcctga
      961 tggctgccct gggcaaggaa tccggcggtg acaacagcct gccgctggcc atcagcgccg
     1021 acgccaagac cccgcaccag gcggtgatta ccgccatgga cgccgccggc aagctgggct
     1081 tttcccacct gcgcatcacc accgtcgagg ccgaggccaa gccttgagcc tcgccgaccg
     1141 gctcaccgcc gcctggtacc acggccatcc ggcgctgatc ctgctgcgcc cgctggagtg
     1201 gttgtaccgg cgggtggtgc agggcaggcg ccgcgcgttc ctcgccggca agggcgacat
     1261 ctaccgcgcc ccggtgccgg tgctggtggt cggcaacgtc acggtcggcg ggaccggcaa
     1321 gaccccgatg attctctggt tgatcgagca ttgccgcgcg cgcggcctgc gcgtcggcgt
     1381 ggtcagtcgc ggctatggcg ccacgccgcc gcagttgccc tggcgcgtgc gagcggatga
     1441 tcagtccagc catgccggcg acgagccgct gctgatcgtc cagcgcagcg gcgtgccgat
     1501 gatgatcgat ccgcagcgcg cccgcgccgt gcaggcgttg gtggagcagg aggaactgga
     1561 tctgatcctc tgcgacgacg gcctgcagca ttaccgcctg gcccgcgaca tcgagctggt
     1621 gctggtggac gcggcccgcg gcctgggcaa cggccgctgc ctgccggccg gccccctgcg
     1681 cgaaccgacc gagcgcctgg ccgaggtgga tgcggtgctg cgcaacggcg ccagcgagga
     1741 cggcgagggg gggtacgccc tgcagctgcg cccgagcgcg ctggtcaacc tgcgcagcgg
     1801 cgagcgggtc gggctggggc atttcccgcc gggccagcaa ctccacgcgg tcgccggcat
     1861 cggcaacccg cagcgtttct tcaacaccct cgaagcgcta aactggcggc cgatcgcgca
     1921 ccccttcgcc gaccacgcca gcttcagccc cgaggcgctg caattcagtc ccaaactgcc
     1981 gctggtgatg accgacaagg acgcggtgaa atgccgggcc ttcgctgccg ccgactggtg
     2041 gtacctggcc gtcgatgcgc agccgtcgtc ggcgttcgcc acctggctgg acgccaagct
     2101 ggacagcctg ctgaccgcga agcgctgagc ttcgcgccct gtattcccac ctcttcgagg
     2161 actccccatg gatcccaaac tgctcgacat cctggcctgc ccggtgtgca agggcccgct
     2221 gcagctttcc gaggacaaga ccgagctgat cagcaagggc gccggcctgg cgtacccgat
     2281 ccgcgacggc atcccggtga tgctggagag cgaagcccgc accctgaccg tcgatgagcg
     2341 cctggacaag taaatgaccg ccttcaccgt cgtgatcccc gcccgctacg cctccagccg
     2401 cctgcccggc aaaccgctgc aggacatcgc cggcaagccc atggtccagc acgtctggga
     2461 acaggcgaag cagagcgggg ccgcccgcgt ggtggtggcc accgatgacg cgcgcatcct
     2521 cgaggcctgc cagggcttcg gcgccgaggt gctgatgacc cgcgtcgacc acaactccgg
     2581 taccgatcgc ctggccgagg tggccagcca gctcggtctg gcgagcgacg ccatcgtggt
     2641 caacgtgcag ggcgacgagc cgctgatccc gccgagcatc atcgatcagg tggccgccaa
     2701 cctggccgcc aatccgcagg ccggcatcgc cacgctggcc gagccgatcg atgacgttgc
     2761 tgcgctgttc aaccccaacg tggtcaaggt ggtggccgac aagtacggcc tggccctgac
     2821 gttcagtcgc gcgccgctgg cctgggcccg cgacgccttt gccaagagcc gcgacgtgct
     2881 gccggaaggc gtgccgtacc gtcggcatat cggcatctat gcctaccgtg ccggctttct
     2941 ccacgacttc gtcgcctggg gtccatgctg gctggaagac accgagtgcc tggagcagct
     3001 ccgtgccctg tggcacggcg tgcgcatcca tgtcgccgat gccctggagg cgccggccgc
     3061 tggcgtcgac accccggaag acctggagcg ggtgcgtcgc ctgctggggg cctgatgcgc
     3121 gtcctgttcg tctgcatggg caacatctgc cgctcgccca cggccgaggg cgtgtttcgc
     3181 catcgcctgc agggcgccgg cctgcacgag cgggtgacgg tagattccgc cggcaccggc
     3241 gactggcacg tcggcaaggc gcccgacggc cgttccagcc aggcggcgct gagccgcggc
     3301 tatgacctgt cgagcctgcg cgcgcgccag gtacagcgcg aggatttcca gcgcttcgac
     3361 ctgatcctgg ccatggacca cgacaatctg gcccgcctgc aggggctgcg cccgggcagc
     3421 ggcggcgccg atctggacct gttcctgcgt cgctaccagc tggcgctgga cgaggtgccc
     3481 gatccctatt acggcggcgc cgatggcttc gagcaggtgc tggacctgat cgagcaggcc
     3541 agcgatgcgc tgctcgccga gatccggggg cgcctgtgag cctgcacctg cacgagtcgg
     3601 tttccctgaa acccttcaac actttcggcg tcgaggcgaa ggcccggctg ttcgccgaga
     3661 cgcgtagcga cgacgaggta cgcgaggcgc tggccgaggc cgagcgcctt ggcctgccgt
     3721 tgctgccggt cggtggcggc agcaacctgc tgctgaccgg cgacgtggac gctctggtgc
     3781 tgcgcatggc cagtcgcggg ctgcgcatcc tcgaagacga tggcgagcga gtgctggtgg
     3841 aggcggaggc cggcgagccc tggcatccgt tcgtgctctg gagcctggag cagggtcttt
     3901 ccggcctgga aaacctcagc ctgattccgg gtaccgtcgg cgccgcgccg atgcagaaca
     3961 tcggtgccta cggcgtggag atcagggatg tgttcgctgg gcttactgcg ctggatcgcc
     4021 ggagcggcga gctgcgtgag ttcggcctcg aggagtgcgc attcgcctac cgcgacagtc
     4081 tgttcaagca gcagccgggg cgctggctga tcctgcgggt acgtttcgcc ctgagccgca
     4141 aggcgaggct gcgcctggac tacggtccgg tgcgccagcg cttgcagcag gagggcatcg
     4201 agacgccgac cgcccacgat gtgagccgcg ccatctgcgc catccgcagc gagaagttgc
     4261 ccgacccggc cgagctgggc aatgccggca gcttcttcaa gaatccggtg gtaccgatcg
     4321 agctggccga gcgtatccgc gccgagcacg ccgatctggt cagctatcca gccggcgagg
     4381 gattggccaa gctcgccgcc ggctggctga tcgagcgggc agggtggaag ggctttcgcg
     4441 agggtgacgc cggcgtgcat cgcctgcagg cgctggtgct ggtcaaccat ggcgcggcga
     4501 ccggcagcga actgctggcc ctggcgcggc gcatccaggc ggacatcgag cggcgcttcg
     4561 gtgtggcgct ggagatagag cccaacgtga tctgagcggc ctcgtgccgg tctcgttacc
     4621 gtacgggccg aaacgaaaaa gggatgccga agcatcccct ttttcatgcg ccgctgaatc
     4681 agtgctgcgg cttggtctcg tcctcggtcg ccggggcggc ctcggtgtcg gcttcggcct
     4741 gctgctccgc gacggtctcg tcactcggct cgctctgggt tacctgggga atctccagga
     4801 tggcctcggg ggcctccgct accggctctt cgacggtctc gaccggagcg gcctcgacga
     4861 cgctctccat cggggcggca gccggctcgg ccacaggctc aacggcttcc acggcctcga
     4921 ccttcggtgc agcctcggct gcagcggcga ggcgggcggc ctcctgctgg cgacgacgca
     4981 cttcacgcgg atcgttcggg gcgcgaccgc cactggcctg ggccggagcg gttgccggag
     5041 cctcttccac caccggcgcg gccggggttt cgacgacagg ctccgcaacg gccggttcga
     5101 ccggcgctgt gtcgaccggc gcggtttcca cggttaccgg ctcgctggcg acgaccggcg
     5161 cagcgggctc ttcggccacg acgcgaactt cgggctgttg cgacggctct tcggccgcga
     5221 cgctggcttc agcctgctgc ggttgctcgg cgaccggagc ctgctcggtt tcggccaggg
     5281 cctgctcggc gacgaaggtc acggcagcgg cggcggccac ggcagcgcct tcggcagacg
     5341 tcgtggtagc gccttcggtg ccttcggctg cggcttcttc gccttcctcg acgatggggt
     5401 tgccatcggc atcgcgcaga cgctcgcggc ggttgctgcg gcgacgctgg ccacgggagc
     5461 ggcggcgcgg acgatcaccg ccctcgtcgg cgtcctgacc ttcttccagc tgctcggcgt
     5521 tctccagcac ttcctcttcg gcggcctcgg tgctcagctg ctcgggacgc ggctggcgct
     5581 cttcacgcgg cgggcgcggc tgacgctcct cgcgcggctt gcgctcggca cgttgctcct
     5641 gggcttcggc attgccggca tccagcggtt cgcgcagttc gcggcggcgc tcttcgcgac
     5701 cttcacgcgg ctggcgctca ctgcgctcac gacggttttc ctggccttca ccgcgcggct
     5761 cacggggctc acggggctcg cgcggttgac gctcctggcg ctcctcgcgg ggctggcgtt
     5821 cttcgcgggc ttcgcgcggc tgacgctctt cacgcggctt gcgctcctcg cgctcgccac
     5881 ggtcactgcg ctcgttgcgt tcaccacgct cgctacgatc acggccacgg ccgtcgcgac
     5941 gattctgctg gcggccgttg cggcgctcgt cgccacgcgg cttgcgctcg gcgggcttgg
     6001 cttcggcagt cggctgcggc tcttcttcct tgccggcgaa caggctgacc aggcccttga
     6061 c
//
LOCUS       DATIHC010000043         2517 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_14071, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000043 DATIHC010000000
VERSION     DATIHC010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2517
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14071"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..477)
                     /locus_tag="VLF16_00740"
     CDS             complement(<1..477)
                     /locus_tag="VLF16_00740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005734775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HSX69428.1"
                     /translation="MANFYEFFAGGGMARAGLGPDWQCLLANDFDPKKAASYAANWGT
                     DHLRVGDVAALTTADLPAGADLAWASFPCQDLSLAGAGAGLKGDRSGTFWPFWQLIKA
                     LGDEDRAPRLVVLENVCGALSSHDGKDFAAISSALSNNGYRFGAVVINAVHFLPQSR"
     gene            complement(470..682)
                     /locus_tag="VLF16_00745"
     CDS             complement(470..682)
                     /locus_tag="VLF16_00745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007247607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69429.1"
                     /translation="MKADRKDSRSSALERINLRLTPEVLKAIDAECSRRAGSVSRNTW
                     ITEAVTERLGRLASSSHPQGAGGANG"
     gene            914..>2517
                     /locus_tag="VLF16_00750"
     CDS             914..>2517
                     /locus_tag="VLF16_00750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015648237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HSX69430.1"
                     /translation="MTSDTPPIAAQGVATLPDEAWAQSRHRTEIIGPLAALEVVGHEA
                     ADEAAQALGLSRRQVYVLIRRARQGTGLVTDLTPGRSGGGKGKGRLPEPVERIIRELL
                     QKRFLTKQKRSLAAFHREVAQACKTQKLPVPARNTVAQRIAGLHPAKIARSRGGQDAA
                     RPLQGAGGIPPEVTMPLEQVQIDHTVIDLIVVDERDRQPIGRPYLTLAIDVFTRCVLG
                     MVVTLEAPSAVSVGLCLAHAACDKRPWLEGLNVEMDWPMSGKPRLLYLDNAAEFKSEA
                     LRRGCEQHGIRLDYRPPGQPHYGGIVERIIGTAMQMIHDELPGTTFSNPGQRGEYDSE
                     KMATLTLRELERWLALAVGTYHGSVHNGLLQPPAARWAEAVERVGVPAVVTRPTAFLV
                     DFLPVIRRTLTRTGFVIDHIHYYADALKPWIARRERLPAFLIRRDPRDISRIWVLEPE
                     GQHYLEIHYRTLSHPAVTLWEQRQALAKLRQLGREQVDESALFRMIGQMREIVTTAQK
                     ATRKARRDADRRQHLKTSEPPAKPIPP"
BASE COUNT          480 a          834 c          795 g          408 t
ORIGIN      
        1 ccgcgactgc ggcaggaaat gaacggcgtt aatgaccacg gcaccgaacc gatagccgtt
       61 gttcgacagg gccgagctga tcgcggcaaa gtctttgcca tcgtgcgagc taagggcgcc
      121 gcatacgttt tccagcacca ccaggcgcgg cgctcgatct tcatccccca gggctttgat
      181 gagctgccag aacggccaga aagtgccgga gcggtcgcct ttgaggccag caccggcacc
      241 ggctagggaa aggtcttggc aagggaacga ggcccaagcc aggtcagcgc cggccggtag
      301 gtcggccgta gtcagtgcgg ccacgtcgcc gacgcgcaga tgatcggtgc cccaattcgc
      361 ggcgtagctg gccgccttct ttgggtcgaa gtcattggcg agcaggcatt gccagtcggg
      421 gccaaggcca gcgcgggcca tgccgccacc ggcgaaaaat tcataaaaat tagccattgg
      481 ctccccctgc accttgcggg tgcgatgacg aagcgagacg ccccaggcgt tccgtcacgg
      541 cttcggtaat ccaagtgttg cgcgatacgc tgccggcccg gcgcgagcat tcggcatcaa
      601 tggctttcag cacctcggga gtgaggcgca gattgatacg ttccagcgca ctagagcgcg
      661 aatctttgcg gtcggctttc atgggcgcca ttgtggcgcc atcgtggctc aaggccaagg
      721 aatttattgt aaacgtcgca taagtcctaa gttgtgcgac agcttgccgc tgtcgttttc
      781 agaagacgac cgcaccatct gactggatgt aacgcctggt gtgcatacgg ctcctgacag
      841 cccaatatca ggagtcgtct gcaccaatct cgactatgct caatactcgt gtgcaccaaa
      901 gcgaggtttg ggcatgacat cagacactcc accgattgcc gcgcaaggcg tggccaccct
      961 gcccgacgag gcatgggcgc aatcccggca ccggacggaa atcatcgggc cactggcagc
     1021 gcttgaggtg gtcgggcatg aagccgccga tgaggcagcc caagcgctgg gcctgtcccg
     1081 gcgacaggta tatgtcctga tccgtcgcgc ccggcagggt actggcctgg taacagacct
     1141 gacgcccggc cgatccggcg gcggcaaagg caaggggcgc ttgccggaac cggtcgagcg
     1201 catcatccgc gagctgctgc aaaagcgctt cctgaccaag cagaaacgca gcctggcggc
     1261 gttccaccgc gaagtcgcgc aggcgtgcaa aacccagaag ctgccggtgc cggcgcgcaa
     1321 caccgtggcc cagcggattg ccggactaca cccggcgaaa atagcccgca gccggggcgg
     1381 gcaggacgct gcccgtccct tgcaaggcgc gggtggcatt ccgccagaag tcaccatgcc
     1441 gctggaacag gtgcagatcg accacaccgt catcgacctg atcgtggtcg acgagcgcga
     1501 ccggcaaccg attggccgcc catatttgac cctcgccatc gacgtgttca cgcgctgcgt
     1561 actcggcatg gtggtcacgc tggaagcgcc gtccgccgtc tcggtcggcc tatgcctcgc
     1621 gcatgccgcc tgcgacaagc ggccctggct ggaagggctg aatgtggaaa tggactggcc
     1681 gatgagcggc aagcccaggc tgctctatct ggacaacgcg gccgagttca aaagcgaagc
     1741 gctgcgccgt ggctgcgaac agcatggcat ccggctggac tatcgcccac caggccagcc
     1801 gcactacggc ggcatcgtgg aacggatcat cggcacggcg atgcagatga tccacgacga
     1861 attaccgggg acgaccttct ccaatcccgg ccagcgcggc gagtacgatt ccgagaagat
     1921 ggccaccctg acgctgcgcg agctggagcg ctggctcgcg ttggcggtag gcacctatca
     1981 cggctccgtg cacaacggcc tgctccagcc gccggccgcg cgctgggccg aggccgtgga
     2041 gcgcgttggc gtcccggccg tcgttacccg ccccaccgcg tttttggtcg atttcctgcc
     2101 ggtgatccgc cgcaccctga cccgcaccgg ctttgtcatc gaccacatcc actactacgc
     2161 cgacgccctc aagccgtgga ttgcccggcg cgagcgcttg cccgccttcc tgatccggcg
     2221 cgatccgcgc gacatcagcc gcatctgggt actggaaccg gaaggtcagc actatctgga
     2281 gatccactac cgcaccttgt cccatccggc cgtcaccctc tgggaacaac gccaggcgct
     2341 ggccaaattg cgtcagctcg ggcgcgagca ggtggacgag tcggcgctgt tccgcatgat
     2401 cgggcagatg cgcgagatcg tgaccaccgc ccagaaggcc acgcgcaagg cgcggcgcga
     2461 cgctgatcgc cgccagcacc tcaagacgtc ggagccaccg gccaagccca taccgcc
//
LOCUS       DATIHC010000044         3838 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7097, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000044 DATIHC010000000
VERSION     DATIHC010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3838)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3838)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3838
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7097"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1018
                     /locus_tag="VLF16_00755"
     CDS             <1..1018
                     /locus_tag="VLF16_00755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HSX69431.1"
                     /translation="SYIVYGPLANGATTLLFEGVPNYPDVTRVAKIIDKHKVNILYTA
                     PTAIRAMMAEGKAAVEGADGSSLRLLGSVGEPINPEAWHWYHENVGRERCPIVDTWWQ
                     TETGGVLISPLPGATALKPGSATRPFFGVQPALVDNLGNLIEGAAEGNLVIIDSWPGQ
                     ARSLYGDHDRFVDTYFKTFKGMYFTGDGARRDEDGYWWITGRVDDVLNVSGHRMGTAE
                     IESAMVAHPKVAEAAVVGVPHDIKGQGIYVYVTLNAGEEPSEQLRQELKNWVRKEIGP
                     IASPDVIQWAPGLPKTRSGKIMRRILRKIATAEYDSLGDISTLADPGVVQHLIDTHRT
                     MQAA"
     gene            1478..2251
                     /locus_tag="VLF16_00760"
     CDS             1478..2251
                     /locus_tag="VLF16_00760"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007943880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSX69432.1"
                     /translation="MKKIVLLGALALTAFSALVQAEDKPLRIGIEAAYPPFAYKTPDG
                     NITGFDYDIGNALCEEMKVKCQWIEQEFDGLIPALKVRKFDAVLSSMSITEERKRSVD
                     FTGKYYATPARLAMKAGTEYSDVAGLKGKKIGVQRSSVYDRYATDVFAPAGAEIVRYG
                     SQNEVFLDLASGRLDGTLADVVNIDDGFLKTDAGKGFALVGPDFTDEKYFGEGQGIAV
                     RKGDKALADKISAAILAIRANGKYQEVQDKYFQFNVYGE"
     gene            2372..3061
                     /locus_tag="VLF16_00765"
     CDS             2372..3061
                     /locus_tag="VLF16_00765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSX69433.1"
                     /translation="MFNGYGSTILDGAWLTVQLALLSMAVAVVLGLIGAAFRLSPVRW
                     LALMGETYATVIRGIPDLVLILLIFYGGQDLVNRIAMMVEYDGYIDINPFVAGVGTLG
                     FIYGAYLSETFRGAFMAIPKGQGEAGVAYGMSPLRVFLRILVPQMIRLAIPGVTNNWL
                     VLVKATALISLVGLQDMMARAKSAGDATREPFTYILLAAAIYLAMTSVSLLVLRYLER
                     RYSVGVKAAEI"
     gene            3072..3770
                     /locus_tag="VLF16_00770"
     CDS             3072..3770
                     /locus_tag="VLF16_00770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008026413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSX69434.1"
                     /translation="MLFDYNVVLDSLPLYFDGVLVTLKLLAIALAVGLLAAVPLAMMR
                     VSRQPLINFPAWLYTYVIRGTPMLVQLYLLYYGLAQFEAVRESFMWPYLSNATFCACL
                     AFAINTSAYSAEILAGSLKATPHGEIEAAKAMGMSRAKLYRRILLPSALRRALPQYSN
                     EVIMMLHTTSLASVVTLIDITGAAKTVSSQFYLPFEAYITAGLFYLALTFILVRLFKL
                     AERRWLAYLAPRKH"
BASE COUNT          665 a         1332 c         1173 g          668 t
ORIGIN      
        1 cagctacatc gtctacggcc cgctggccaa cggcgccacc accctgttgt tcgagggcgt
       61 gccgaactac ccggacgtga cccgcgtcgc caagatcatc gacaagcaca aggtcaacat
      121 cctctacacg gcgccgaccg ccatccgcgc catgatggcc gagggcaaag ctgcggtaga
      181 gggcgccgac ggctccagcc tgcgcctgct cggctcggtg ggtgagccga tcaacccgga
      241 agcctggcac tggtaccacg agaacgtcgg ccgcgagcgc tgcccgatcg tcgacacctg
      301 gtggcagacc gagaccggcg gtgtgctgat cagcccgctg ccgggcgcca ctgcgctcaa
      361 gccaggctcg gcgacccgtc cgttcttcgg tgtgcagccg gcactggtcg acaacctggg
      421 caacctgatc gagggcgccg ccgaaggcaa cctggtgatc atcgactcct ggccgggcca
      481 ggcacgcagc ctgtacggcg atcacgaccg cttcgtcgac acctacttca agaccttcaa
      541 gggcatgtac ttcaccggtg acggcgcccg tcgcgatgaa gacggctact ggtggatcac
      601 cggtcgcgtc gacgatgtgc tcaacgtctc cggccaccgc atgggcaccg ccgagatcga
      661 gagcgccatg gtcgcccacc cgaaagtcgc cgaggccgcc gtggtcggcg tgccacacga
      721 catcaagggg cagggcattt atgtgtacgt gaccctgaac gcgggcgagg aaccgtccga
      781 gcagctgcgt caggaactga agaactgggt gcgcaaggag atcggtccga tcgcctcgcc
      841 cgacgtcatc cagtgggctc cgggactgcc gaagacccgc tcgggcaaga tcatgcgccg
      901 catcctgcgc aagatcgcca ccgccgaata cgattccctc ggcgacatct ccacgctggc
      961 cgaccccggc gtggtgcagc acctcatcga cacccatcgc accatgcagg ccgcctgacc
     1021 cggcgcaccc gcggacatgc acgaccccgg ccacgagccg gggtttttca ttggcgtggc
     1081 ggtaacgcgg tgcaccgaaa cggggcgcgc gggaacacct cgcgcccatg cgcggagctc
     1141 gtgaaaaact cccgtagcgc tgcaggccgc gctatccgca gggtgccggg gaagtggcgt
     1201 ggttattgcc tgagtaaccg gttaagcttt tatgtcccgc tggtcacgtt tcggctgacc
     1261 tgtcaatacg gaccccgcgt ccgtccagtg cttctgtaat ttgttgtcgc tttgaagaaa
     1321 tatcgaccta ccccctgtcg atagaatgcc gcccacttgg ccgacccgct cgcgccgcgt
     1381 tcggcggcag caaagccggt gacactttct acaattcacc atggccatgg cgaccccccg
     1441 ttctgcccat cgctgtaccc attcgaagga gcacaagatg aagaagatcg tcctgctcgg
     1501 cgccctggcg ctgaccgcat tcagtgcgct ggttcaggca gaagacaaac ccctgcgcat
     1561 cggtatcgaa gcggcctacc cgcccttcgc ctacaagacc ccggacggca acatcaccgg
     1621 cttcgactac gacatcggca acgcgctgtg cgaagagatg aaggtcaagt gccagtggat
     1681 cgagcaggag ttcgacggcc tgatcccggc cctcaaggtg cgcaagttcg acgcggtgct
     1741 gtcgtccatg tccatcaccg aagagcgcaa gcgctccgtg gacttcaccg gcaagtacta
     1801 cgccaccccg gcgcgtctgg cgatgaaggc cggcaccgag tacagcgatg tggccggcct
     1861 caagggcaag aagatcggcg tgcagcgctc gtccgtgtat gaccgctacg ccaccgacgt
     1921 cttcgccccg gcgggcgccg agatcgtgcg ctacggctcg cagaacgaag tcttcctgga
     1981 cctggcctca ggtcgcctgg acggcaccct ggccgatgtc gtcaacatcg acgacggctt
     2041 cctcaagacc gacgccggca agggcttcgc cctggtaggt ccggacttca ccgacgagaa
     2101 gtacttcggc gaaggccagg gcatcgccgt gcgcaagggc gacaaggccc tggccgacaa
     2161 gatcagcgcc gccatcctgg cgatccgcgc caacggcaag taccaggaag tgcaggacaa
     2221 gtacttccag ttcaacgtct acggcgaata acgccgctgc gcccatcctt cccgggtcgg
     2281 ggagggtggg cacgggccgg gtgagcccgg actcacccca tgcccctcgc tcctggcaag
     2341 agcgctcctc ctgcttcaga ggacagattt catgttcaac ggctacggct cgaccattct
     2401 cgacggcgcc tggctcaccg ttcagctggc gctgctgtcc atggcggtgg ccgtcgtgct
     2461 cggcctgatc ggcgcggctt ttcgcctgtc gccggtgaga tggctggcgc tgatgggcga
     2521 gacctacgcc accgtgatcc gcggcattcc cgacctggtg ctgatcctgc tgatcttcta
     2581 cggcggccag gacctggtga accgtatcgc catgatggtg gagtacgacg ggtacatcga
     2641 catcaacccc ttcgttgccg gtgtcggcac cctgggcttc atctatggcg cctacctgtc
     2701 ggagaccttc cgtggcgcct tcatggccat ccccaagggc cagggcgagg ccggcgtggc
     2761 ctatggcatg agcccgctgc gagtgttcct gcgcatcctc gtgccgcaga tgatccgcct
     2821 ggccattccc ggtgtgacca ataactggct ggtgctggtc aaggccaccg cgctgatttc
     2881 cctggtcggc ctgcaggaca tgatggcccg cgccaagagc gccggcgacg cgacccgcga
     2941 gccgttcacc tacatcctcc tggcagccgc catctacctg gcgatgacca gcgtgtcgct
     3001 gctggtgctg cgctacctcg aacgccgcta ttcggtcggc gtgaaagcgg ccgagatctg
     3061 agggagctgc catgcttttc gactacaacg tggtactcga cagcctgccg ctgtatttcg
     3121 acggcgtgct ggtcaccctc aagctgctgg cgatcgccct ggccgtcggc ctgctcgcgg
     3181 ccgtgccgct ggccatgatg cgcgtgtcca ggcagccgct gatcaatttc ccggcctggc
     3241 tctacaccta cgtgatccgc ggcacgccga tgctggtgca gctgtacctg ctgtactacg
     3301 gcctggccca gttcgaggcg gtgcgcgaga gcttcatgtg gccttacctg tccaacgcca
     3361 ccttctgcgc ctgcctggcc ttcgccatca acaccagcgc ctacagcgcc gaaatcctcg
     3421 ccggcagcct caaggccacg ccccacggcg agatcgaggc ggccaaggcc atgggcatgt
     3481 cgcgcgccaa gctgtaccgc cgcatcctcc tgccgtccgc gctgcgtcgt gcgctgccgc
     3541 agtacagcaa tgaggtgatc atgatgctgc acaccaccag cctggcctcg gtggtgacgc
     3601 tgatcgacat caccggtgcg gccaagaccg tcagctcgca gttctacctg ccgttcgagg
     3661 cctacatcac cgccggcctg ttctacctgg cgctgacctt catcctggtg cgcctgttca
     3721 agctggccga acgccgctgg ctggcgtacc tggccccgcg caagcactga ggccgacgtc
     3781 atgccgcgca tcgatcacca tccgtcccga gccgccgtcc attgccgact gtggctgg
//
LOCUS       DATIHC010000045         1551 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_23428, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000045 DATIHC010000000
VERSION     DATIHC010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1551
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23428"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..475
                     /locus_tag="VLF16_00775"
     CDS             <1..475
                     /locus_tag="VLF16_00775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010485381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016158 - 3-phytase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phytase"
                     /protein_id="HSX69435.1"
                     /translation="PSQPEGCVADDQRQRLFLGEESTGVWAVDARADGPTELHEVIKV
                     GDALHADVEGLALYQSAERDYLVVSSQGNDSYLVLDAEPPYALHGALRVGLNGALGID
                     GASETDGLEVTSANLGGPWSQGLLVVQDGRKRMPEATQNFKFVPWSEVARALGLE"
     gene            589..1296
                     /gene="tolQ"
                     /locus_tag="VLF16_00780"
     CDS             589..1296
                     /gene="tolQ"
                     /locus_tag="VLF16_00780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003300068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolQ"
                     /protein_id="HSX69436.1"
                     /translation="MHATLEQMTVWSLVSDASLLVKLVMLTLLAASLASWYLIVQRSL
                     LLGRSERLARDFLRRFRETGDLATLYREGAERGDADATLEQLFRAGYGEYAQLRRDPG
                     VARETLIDGVERSLLVAISEQEERLEKGLPLLATIGSVSPYIGLFGTVWGIMNSFIGL
                     SQVQQATLSTVAPGIAEALIATAIGLFAAIPAVIAYNRFSARVAALSTRLYAFGNELQ
                     GRLQRRAPGATGVAQAA"
     gene            1308..>1551
                     /locus_tag="VLF16_00785"
     CDS             1308..>1551
                     /locus_tag="VLF16_00785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HSX69437.1"
                     /translation="MRKPQCKHGPKAEMNVVPYIDVMLVLLVIFMVTAPMLTQGVKIE
                     LPKVAAEALPSDTQQQVLTLSVQADGGYYWNLGSELD"
BASE COUNT          241 a          570 c          519 g          221 t
ORIGIN      
        1 gcccagccag cccgagggct gcgtggccga cgatcagcgc cagcgcctgt tcctcggcga
       61 ggagagcacc ggcgtgtggg cggtggatgc ccgcgccgac ggccctaccg agctgcacga
      121 ggtgatcaag gtcggcgacg cgctgcacgc cgacgtcgag ggcctggccc tgtaccagtc
      181 cgccgagcgc gactacctgg tggtctccag ccagggcaac gacagctacc tggtgctcga
      241 cgccgaaccg ccgtacgccc tgcatggcgc cttgcgcgtc ggcctcaacg gcgcgctggg
      301 catcgacggt gcctccgaga ccgacggcct ggaagtcacc tcggccaacc tcggcgggcc
      361 ctggagccag ggcctgctgg tggtgcagga cggccgcaag cgcatgcccg aggccacgca
      421 gaacttcaag ttcgtgccct ggagcgaggt cgcccgcgcc ctcggcctgg aatagcgcct
      481 gtcatcagcc ggtaaccgcc acgccatcga atagcaccgt tcgccctctc ctgcgggaga
      541 gggtcgggat gagcgaacac tcagcccgcc atgccaagga gccacaccat gcacgccacc
      601 ctcgaacaga tgaccgtctg gagcctggtc agcgacgcca gcctgctggt caagctggtc
      661 atgctgaccc tgctcgccgc ctccctggcc agctggtacc tgatcgtcca gcgcagcctg
      721 ctgctgggcc gcagcgagcg cctggcgcgg gacttcctgc gccgcttccg cgagaccggc
      781 gacctcgcca ccctgtaccg cgagggcgcc gagcgcggcg atgcggacgc cacgctggag
      841 caactgttcc gcgccggcta cggcgagtac gcgcagctgc gtcgcgaccc cggcgtggcg
      901 cgcgagacgc tgatcgacgg cgtcgagcgt agcctgctgg tggccatctc cgagcaggag
      961 gaacgcctgg agaagggcct gccgctgctc gccaccatcg gttcggtcag cccctacatc
     1021 ggcctgttcg gcaccgtgtg ggggatcatg aattccttca tcggcctgtc ccaggtgcag
     1081 caggcgacgc tgtccaccgt cgcgccgggc atcgccgagg cgctgatcgc caccgccatc
     1141 ggcctgttcg ccgccatccc ggcggtgatc gcctacaacc gcttctccgc ccgcgtcgcc
     1201 gcgctcagta cccgcctgta cgccttcggc aacgagctgc agggccgcct gcaacggcgc
     1261 gcccccggcg ccaccggcgt ggcccaggcg gcctgaggag aggcgagatg cgcaagccgc
     1321 agtgcaagca cggccccaag gccgagatga acgtggtgcc ctacatcgac gtgatgctgg
     1381 tgctgctggt gatcttcatg gtcaccgcgc ccatgctcac ccagggcgtg aagatcgagc
     1441 tgcccaaggt cgccgccgag gcgctgccca gcgataccca gcagcaggtg ctgaccctct
     1501 cggtgcaggc cgacggcggc tactactgga acctcggcag cgagctggac a
//
LOCUS       DATIHC010000046         2231 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4838, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000046 DATIHC010000000
VERSION     DATIHC010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2231
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4838"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..150)
                     /locus_tag="VLF16_00790"
     CDS             complement(<1..150)
                     /locus_tag="VLF16_00790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003341842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3820 family protein"
                     /protein_id="HSX69438.1"
                     /translation="MNPEDLLLLVTRTMPFGKYQGRLIADLPGNYLNWFAREGFPKGE
                     IGRLLA"
     gene            270..1736
                     /gene="dgt"
                     /locus_tag="VLF16_00795"
     CDS             270..1736
                     /gene="dgt"
                     /locus_tag="VLF16_00795"
                     /EC_number="3.1.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003159770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008832 - dGTPase activity [Evidence IEA];
                     GO_process: GO:0006203 - dGTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dGTPase"
                     /protein_id="HSX69439.1"
                     /translation="MDFKAKISLRRARDSGTAPRPGDADWLFELGEHLESDRGRILNS
                     AAVRRLQQKTQVFPLERNAAVRSRLTHSLEVQQVGRHIVRTLFQKLGGDAKRYGLEDL
                     ERALETLVEMACLTHDIGNPPFGHFGEFAIGDWCARHLEGLFTAAVPQGDSELRQQML
                     TDLAAFEGNAQAIRLVHRLHDMNLTYSQTACMLKYVRAAHQPKPEQGSTGAYLRKKPG
                     FYLSEQGFVETLWQALGMQPQTRYPLVYVMEAADDISYCLADLEDAVVKGILDLPRLC
                     ELLRSTFARDWPEVRAIDANRRSFDELLQDALQRADDEPVDKVGKFFIRLRVNLIHPL
                     VQHAAEQFIEQLDAVYAGTLDRALLEDDSPACAVVQTFKRVGAEHVFCHREVETLQLR
                     GLRILQGLLEVYGALLGMSGGEFAALLEGRGRADLRMLVRRLPSHLLAAYQVALGEHA
                     GADAPLWEFYHRARLLLDFVSGLTDQLAEDEYRVLTAQ"
BASE COUNT          336 a          719 c          814 g          362 t
ORIGIN      
        1 cgccagcagg cggccgatct cgcccttggg aaaaccctcg cgggcgaacc agttgaggta
       61 gttgccgggc aggtcggcga tcagccggcc ctggtatttg ccgaagggca tggtgcgggt
      121 caccagcagg aggaggtctt cgggattcat ggcgtggtcg aggcgaaagg ggcgctcagg
      181 ataacccggc ggcaccgcgg cgcggccagc gttgtcgtcg cggcggccgc cgcggtaggc
      241 tgcggcctga tcggcaagga gcgagtgcgt tggatttcaa ggcgaagatt tccctgcgcc
      301 gtgcccgcga cagcggcacg gccccccggc ccggcgacgc cgactggctg ttcgaactgg
      361 gcgagcacct ggagagcgac cgcgggcgca tcctcaattc ggcggcggtg cggcggctgc
      421 agcagaagac ccaggtcttc ccgctggagc gcaacgccgc ggtgcgcagc cgtctgaccc
      481 attcgctgga agtgcagcag gtcggccggc atatcgtgcg cacgctgttc cagaagctcg
      541 ggggcgatgc caagcggtat ggcctggagg atctggagcg ggcgctggaa accctggtgg
      601 agatggcctg cctgacccac gacatcggca atccgccgtt cggccatttc ggcgaattcg
      661 ccatcggcga ctggtgcgcg cgccacctcg aggggctgtt caccgccgcg gtgccgcagg
      721 gtgattccga gttgcggcag cagatgctga ccgacctcgc cgccttcgag ggcaacgccc
      781 aggccatccg cctggtgcat cgcctgcacg acatgaacct gacctacagc cagaccgcgt
      841 gcatgctcaa gtacgtgcgc gcggcgcacc agccgaagcc ggagcagggc agcaccggcg
      901 cctacctgcg caagaagccc ggcttctacc tgagcgagca gggcttcgtc gaaacgctgt
      961 ggcaggcgct gggcatgcag ccgcagaccc gctatccgct ggtctacgtg atggaggcgg
     1021 cggacgacat ctcctactgc ctggccgacc tggaggacgc ggtggtcaag ggcatcctcg
     1081 acctgccacg gctgtgcgag ctgctgcgca gcaccttcgc gcgcgactgg ccggaggtgc
     1141 gggctatcga tgccaaccgt cgcagtttcg acgaactgct gcaggacgcc ctgcagcgcg
     1201 ccgacgacga gccggtggac aaggtcggca agttcttcat ccgcctgcgg gtgaacctga
     1261 tccatccgct ggtgcagcac gccgccgagc agttcatcga gcagctggac gcggtatacg
     1321 ccggcaccct cgaccgcgcc ctgctggagg acgacagccc cgcctgcgcg gtggtgcaga
     1381 cgttcaagcg cgtcggcgcc gagcatgtgt tctgccaccg cgaggtggag accctgcagc
     1441 tgcgtggcct gcgcattctg caagggctgc tggaggtgta cggcgcgctg ctcggcatga
     1501 gcggcggaga gttcgccgcg ctgctggaag gccgcggccg cgccgacctg cgcatgctgg
     1561 tacgccgcct gcccagccac ctgctggctg cctatcaagt ggccctcggc gagcacgccg
     1621 gggcggacgc gccgttgtgg gagttctacc accgcgcgcg gctgctgctg gacttcgtca
     1681 gcggcctcac cgaccagctg gccgaagacg aataccgggt gcttaccgcc cagtaggacg
     1741 caccgtgggc gcgccgtgtt tagcgtcgcg ctgtagctgc ggctgtcgcg tagggtgcgc
     1801 cgcgcgcacc gtttgtacgg agcggtgatt gatggtgcgc acggcgcaca tacgtccggc
     1861 gttgcgtggg tggcggtgtt cggggttgcg ccggagccgc agttgtcgcg tagggtgcgc
     1921 cacgcgcacc gtttgcagcg agcgctgatc gttggtgcgc acggcgcacc ctacgtccgg
     1981 cgttgcgcgg gaagcgatgt tcggggttgc gccggagccg cggctgtcgc gtagggtgcg
     2041 ccgtgcgcac cgtttgtatg gagcggtgat cgttggtgcg cacggcgcac cctacgggtg
     2101 aagccgtgtg gataaatcgc gggcacaaaa agccgggtct ctcgcgagcc cggctttttt
     2161 gtggcggcgc cgatcagctg tggcggatca ggtagtcgaa ggcgctcagc gaggccttgg
     2221 aaccttcgcc c
//
LOCUS       DATIHC010000047         2758 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35239, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000047 DATIHC010000000
VERSION     DATIHC010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2758
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35239"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..159)
                     /locus_tag="VLF16_00800"
     CDS             complement(<1..159)
                     /locus_tag="VLF16_00800"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253255.1"
                     /note="catalyzes the formation of glutamate 5-phosphate
                     from glutamate in proline biosynthesis; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HSX69440.1"
                     /translation="MRDKVTGAQRWVVKIGSALLTADGRGLDRSAMAVWVEQMVALRE
                     AGVELVLVS"
     gene            complement(225..1448)
                     /gene="cgtA"
                     /locus_tag="VLF16_00805"
     CDS             complement(225..1448)
                     /gene="cgtA"
                     /locus_tag="VLF16_00805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Obg family GTPase CgtA"
                     /protein_id="HSX69441.1"
                     /translation="MKFVDEVSIFVKAGDGGNGMMSFRREKFIEKGGPNGGDGGDGGS
                     VFLEADENLNTLVDYRYTRRFNAQNGEKGGSTECTGAKGEDLILPVPVGTTVIDAATQ
                     EVIGDLTRAGQRLMVAQGGWHGLGNTRFKSSTNRAPRQTTPGKPGEQRDLKLELKVLA
                     DVGLLGLPNAGKSTFIRSVSAAKPKVADYPFTTLVPNLGVVSVGRYKSFVIADIPGLI
                     EGASEGAGLGIRFLKHLARTRLLLHLVDMAPLDESDPAEAAEIIIRELEKFSPALAER
                     ERWLVLNKADQLLDDEREERMRAVVERLEWKGPVFVISALEREGTEALSQAIMRYMDE
                     RAVRIEEEEDYAAELAELDRRIEDEARARLQALDDKRALRKAGLKSVDDVGDDDDWDD
                     FEDDEDGPEIIYVRD"
     gene            complement(1556..1813)
                     /gene="rpmA"
                     /locus_tag="VLF16_00810"
     CDS             complement(1556..1813)
                     /gene="rpmA"
                     /locus_tag="VLF16_00810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HSX69442.1"
                     /translation="MAHKKAGGSTRNGRDSESKRLGVKMYGSQAIKAGNIIVRQRGTQ
                     FHAGYGVGMGKDHTLFAKIDGVVKFEVKGAFGRRYVSVVAA"
     gene            complement(1838..2149)
                     /gene="rplU"
                     /locus_tag="VLF16_00815"
     CDS             complement(1838..2149)
                     /gene="rplU"
                     /locus_tag="VLF16_00815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003154364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HSX69443.1"
                     /translation="MYAVIVTGGKQYKVAEGEFLKVEKLEVATGESVTFDRVLLVGNG
                     DDVKIGAPVVDGAKVVAEVVSQGRHDKVTIIKFRRRKHHMKRQGHRQWFTEIKITGIQ
                     A"
     gene            2455..>2758
                     /locus_tag="VLF16_00820"
     CDS             2455..>2758
                     /locus_tag="VLF16_00820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HSX69444.1"
                     /translation="MQPQAFQSVVADDFAAVDGIIRQQLKSHVPLVEKIGDYIISAGG
                     KRLRPLLVLLSGKALGYQADDLRLLAATIEFLHTATLLHDDVVDMSGMRRGRATANA"
BASE COUNT          491 a          960 c          792 g          515 t
ORIGIN      
        1 cgataccagt accagctcca ccccggcctc gcgtagggcc accatctgct cgacccacac
       61 cgccatggcg gaacggtcga gaccacgccc atcggcggtc agcaatgcgc tgccgatctt
      121 caccacccag cgctgcgcgc cggtcacctt gtcccgcatg atgccctcta ccccagccag
      181 tcagcaaaac gccgctataa agcggcgctg cacgatacct actctcagtc cctgacgtaa
      241 atgatctcgg gaccgtcttc gtcatcctcg aagtcgtccc agtcatcgtc gtcgccgaca
      301 tcatcgacac tcttcagccc ggccttgcgc agggcgcgct tgtcatccag cgcctgcaga
      361 cgggcacgcg cctcgtcctc gatgcgccga tccagctcgg ccaactcggc agcgtagtct
      421 tcctcttcct cgatacgcac ggcgcgctca tccatgtagc gcatgatggc ctggctcagc
      481 gcctcggtac cctcgcgctc cagagcggag atgacgaaca ccggcccctt ccactccagg
      541 cgctcgacca ctgcgcgcat gcgctcctcg cgttcgtcat cgagcagctg gtcggccttg
      601 ttcagcacca gccagcgctc gcgctcagcc agcgccgggc tgaatttctc cagctcgcga
      661 atgatgatct cggccgcctc ggccggatcg ctctcatcca gcggcgccat gtccaccaga
      721 tgcagcagca gacgggtgcg cgccaagtgc ttgaggaagc ggatacccag gccggcaccc
      781 tcggaggcac cctcgatcag gcccggaata tcggcgatca cgaagctctt gtagcgaccg
      841 acactgacca cgcccaggtt cggcaccagg gtggtgaagg ggtagtcggc aacctttggc
      901 ttggccgcgg ataccgagcg gatgaaggta ctcttgccgg cgtttggcag accgagcagg
      961 ccgacgtcgg ccaggacctt caactccagc ttgagatcgc gctgctcgcc cggcttgccc
     1021 ggcgtggtct ggcgtggcgc acggttggtg ctggacttga agcgggtatt gcccagaccg
     1081 tgccagccgc cctgggcgac catgaggcgc tgaccggccc tggtcaggtc gccgatgacc
     1141 tcctgggtcg cggcatcgat taccgtggtg ccgaccggca ccggcaggat aaggtcctcg
     1201 cccttggcgc cggtgcattc ggtgctgccg cccttctcgc cattctgcgc gttgaagcga
     1261 cgggtgtagc ggtagtccac cagggtattg aggttttcgt cggcctcgag gaacaccgag
     1321 ccgccgtcgc cgccgtcgcc gccgttgggg ccacccttct cgatgaactt ctcacgacga
     1381 aaactcatca tgccgttacc gccgtcgccg gcttttacaa atatcgaaac ttcgtcgacg
     1441 aatttcatta gggctgcctc ccaccgcgac ggcgggccag tgaactcagg aatacaggat
     1501 acacagaaac aaaaaagccc cgtcgcgaga cagggctttt tcagcaagcg cggacttagg
     1561 cagccacgac gctcacgtag cggcgaccga aggcgccctt cacttcgaac ttgaccacgc
     1621 cgtcgatctt ggcgaacagg gtgtggtctt tgcccatgcc aacgccgtaa ccggcgtgga
     1681 actgggtgcc gcgctgacgc acgatgatgt tgccggcctt gatggcctgg ctgccgtaca
     1741 tcttcacgcc aaggcgttta ctttctgagt cgcggccgtt acgagtacta ccgccagctt
     1801 ttttgtgtgc catgagtcat agcctcctaa aaggggatca ggcctggatg ccggtgatct
     1861 tgatttcggt gaaccactga cggtggccct gacgcttcat gtggtgctta cgacggcgga
     1921 acttgatgat ggtcactttg tcgtgacggc cctgggagac cacctcggca acgaccttgg
     1981 caccatcaac caccggagcg ccgattttca cgtcgtcacc gttgccaacc agcagaacgc
     2041 ggtcgaaggt tacggattcg ccagtggcga cttccagctt ctcgaccttg aggaattcac
     2101 cttcggcgac tttgtattgc ttgccaccgg taacaattac tgcgtacatg gatttttctc
     2161 cgtaaaacct gctcacccga ctctttatag gaagagttat tggccggcat ggctgcatgg
     2221 ggccggactg acacccgtgc aattgcgtaa ggcagggagt tgcccataga agtttggggc
     2281 cgcgattgta cggaaagccc cgccccgagg caagccccgc caggcctcgc cttgacagcc
     2341 cctaccccgc cacctagcat gccgcgcagc ccggtccggc cccgcccgac ccgccttttc
     2401 gccgcctccc gcgcccggga ataccggccc ccgtaccagg agctcccgac accgatgcaa
     2461 ccccaggcct tccaaagcgt ggtcgcggac gatttcgccg ccgtcgacgg catcatccgc
     2521 cagcagctga agtcccatgt gcccctggtg gagaagatcg gcgactacat catctccgcg
     2581 ggcggcaaac gcctgcgccc gctgctggta ctgctcagcg gcaaggccct gggctaccag
     2641 gccgacgacc tgcgcctgct ggccgccacc atcgagttcc tgcacaccgc caccctgctg
     2701 cacgacgacg tggtcgacat gtccggcatg cgccgtggcc gcgccaccgc caacgccc
//
LOCUS       DATIHC010000048         3521 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7100, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000048 DATIHC010000000
VERSION     DATIHC010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3521
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7100"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1430)
                     /locus_tag="VLF16_00825"
     CDS             complement(<1..1430)
                     /locus_tag="VLF16_00825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020796618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HSX69445.1"
                     /translation="MPVRYDNYIGGEWVAGAAYADNVNPSDLNDVVGEYAQADAAQVG
                     QAVAAARAAFPAWSTSGIQARSDALDKVGSEILARREELGTLLAREEGKTLPEAIGEV
                     TRAGNIFKFFAGECLRLAGEIVPSVRPGVSVEVTREPLGVIGLITPWNFPIAIPAWKI
                     APALAYGNCVVFKPADLVPGCAWAIAEIISRAGFPAGVFNLVMGAGRVVGEAMVDNRE
                     VDGISFTGSVGVGRAIAAKCVARGAKVQLEMGGKNPQIILDDADLKVAVELAVQSAFY
                     STGQRCTASSRLIVTSGIHDQFVAAMAERMKSIRVGHALHSGVDVGPVVSQAQLEQDL
                     RYIDIGRDEGARLITGGERVRCETEGYFLAPTLFADSSADMRISREEIFGPVANVVRV
                     ADYEAALAMANDTEFGLSAGIATTSLKYANHFKRHAQAGMVMVNLPTAGVDYHVPFGG
                     RKGSSYGPREQGRYAAEFYTTVKTTY"
     gene            complement(1450..2361)
                     /gene="kdgD"
                     /locus_tag="VLF16_00830"
     CDS             complement(1450..2361)
                     /gene="kdgD"
                     /locus_tag="VLF16_00830"
                     /EC_number="4.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017709392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047448 - 5-dehydro-4-deoxyglucarate
                     dehydratase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-4-deoxyglucarate dehydratase"
                     /protein_id="HSX69446.1"
                     /translation="MNPQELKSILSHGLLSFPVTDFDAAGNFNKDGYVRRLEWLAPYG
                     ASALFAAGGTGEFFSLDSREYSEIIKTAVDTCEKSVPILAGVGGPTRVAIQMAQEAER
                     LGAKGLLLLPHYLTEASQDGVAAHVEQVCKSVKIGVVVYNRNVCRLNATLLEQLAERC
                     PNLIGYKDGLGDIELMVSIRRRLGDRFSYLGGLPTAEVYAAAYKALGVPVDSSAVFNF
                     VPKTAMDFYRAIAAEDHETVGKLIDDFFLPYLDIRNRKAGYAVSIVKAGAKLAGYDAG
                     PVRAPLTDLLPEEVEKLAALMEKLGPQ"
     gene            2849..>3521
                     /locus_tag="VLF16_00835"
     CDS             2849..>3521
                     /locus_tag="VLF16_00835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019339083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate dehydratase"
                     /protein_id="HSX69447.1"
                     /translation="MSHSTPRVTRMQVIPVAGRDSMLLNLCGAHAPYFTRNLVLLEDD
                     AGRTGCGEVPGGEGIRQALERCTELVVGQPIGRYNNTLNRLRQAIAGPADGPQTTRHQ
                     VTSDAEARVLQQPHEINLRLDNVITAVEAALLDLLGQHLGVPVCELLGSGRQRDHVPM
                     LAYLFYIGDRRRTDLPYPTGEGATDAWYQLRHQAALTASDIARLAEAAHARYGFTDFK
                     LKGGVM"
BASE COUNT          572 a         1190 c         1183 g          576 t
ORIGIN      
        1 atgtaggtgg tcttcaccgt ggtgtagaac tcggcggcgt agcggccctg ttcgcgcggg
       61 ccgtaggacg agcctttgcg accgccgaac ggcacgtggt aatcgacccc ggcagtgggc
      121 agattgacca tgaccatgcc ggcctgggcg tggcgcttga agtggttggc gtacttcagc
      181 gaggtggtgg cgatgcccgc ggacaggccg aactcggtgt cgttggccat cgccagagcc
      241 gcctcgtagt cggccacgcg caccacgttg gccaccgggc cgaagatttc ctcgcggctg
      301 atgcgcatgt cggccgagct gtcggcgaac agggtcggcg ccaggaagta gccttcggtc
      361 tcgcagcgca cgcgctcgcc accggtgatc aggcgcgcac cttcgtcgcg gccgatgtcg
      421 atgtagcgca ggtcctgctc gagctgggcc tgggacacca ccgggccgac gtcgacgccg
      481 ctgtgcaggg catggccgac gcgaatcgac ttcatgcgct cggccatggc ggcgacgaac
      541 tggtcgtgga tacccgaggt gacgatcagg cggctggagg cggtgcaacg ctggccggtg
      601 gagtagaagg cgctctgcac ggccagctcg acggccacct tgaggtcggc gtcgtcgagg
      661 atgatctgcg ggttcttgcc gcccatctcc agctgcacct tggcgccgcg tgccacgcac
      721 ttggcggcga tggcgcggcc gacaccgacc gagccggtga agctgatgcc gtcgacttcg
      781 cggttgtcga ccatggcctc accgaccacg cggccggcgc ccatcaccag gttaaacacg
      841 ccggccggga agccggcgcg ggagatgatc tcggcgatgg cccaggcgca gcccggtacc
      901 aggtcggcgg gcttgaacac cacgcagttg ccgtaggcca gggccggggc gatcttccac
      961 gccgggatgg cgatggggaa gttccacggg gtgatcaggc cgatcacgcc gagcggctcg
     1021 cgggtcactt ccaccgacac gcccgggcgc accgacggca cgatctcgcc ggccaggcgc
     1081 aggcattcgc cggcgaagaa cttgaagatg ttgccggcgc gggtcacctc gccgatggcc
     1141 tcgggcaggg tcttgccctc ttcccgggcc agcagggtgc cgagctcttc gcggcgggcg
     1201 aggatctcgc tgccgacctt gtccagcgcg tcgctgcgcg cctggatgcc ggaggtggac
     1261 caggccggga aggcggcgcg cgccgccgcc accgcctggc cgacctgagc ggcgtcggcc
     1321 tgggcgtatt cgccgaccac gtcgttcagg tcagacggat tgacgttgtc cgcgtaggcg
     1381 gcgccggcga cccattcgcc accgatgtag ttgtcgtaac gcacgggaat tctcctgtcg
     1441 tcgagggcct tattgcgggc cgagtttttc catcagcgcg gccagcttct cgacctcttc
     1501 gggcagcagg tcggtcagcg gcgcgcgcac cgggccggcg tcgtagccgg ccagcttggc
     1561 gccggccttg acgatgctca cggcatagcc ggccttgcgg ttgcggatgt ccaggtaggg
     1621 caggaagaaa tcgtcgatca gcttgccgac ggtttcgtga tcttccgcgg cgatggcgcg
     1681 gtagaagtcc atggcggtct tcggcacgaa gttgaacacc gcggaggagt ccaccggcac
     1741 gcccagggcc ttgtaggcgg cggcgtagac ttcggcggtc ggcaggccgc cgaggtagct
     1801 gaagcggtcg ccgaggcggc ggcggatgga aaccatcagt tcgatgtcgc ctaggccgtc
     1861 cttgtagccg atcaggttcg ggcagcgctc ggccagttgc tcgagcaggg tggcattgag
     1921 gcggcagacg ttgcggttgt acaccaccac gccgatcttc accgacttgc agacttgctc
     1981 gacgtgagcg gcaacaccgt cctgggacgc ttcggtcagg tagtgcggca gcagcagcag
     2041 gcccttggcg cccaggcgtt cggcctcctg ggccatctgg atggcgacgc gggtcgggcc
     2101 gccgacgccg gcgaggatcg gcacgctctt ctcgcaggtg tccacggcgg tcttgatgat
     2161 ctcgctgtat tcacggctgt cgagggagaa gaactcgccg gtaccgccgg cggcgaacag
     2221 cgcggacgcg ccgtagggcg ccagccactc caggcggcgc acgtagccgt ccttgttgaa
     2281 gttgccggcg gcatcgaaat cggtgaccgg gaaagacagc aggccgtggg aaaggatgga
     2341 ctttagttct tgtggattca ttgttcggac accctgaaga gcagttgttt ggtatggcat
     2401 cagccgcagc tgtagagata cgttatcgta caacaacaaa aaaaacacca gctttccacg
     2461 ccactcatct cgatccgccc cttaccggcg gcgccctcgt cgatctgcca cggcgccgcc
     2521 caccttctat atcaagggat tccgaggaac agaagcaggc gcttcatctt agtgcagagc
     2581 tcgccggcga ccgtcccgac catcgtaggc gttgacagca aacgggacgg ctgttactac
     2641 tttttcaaag tcatacgaca acctataaca acaaccgtgg aggatcaggt catgtcatcg
     2701 acctcgcccc gctggcctcg ccactcggcg cactgccccg cctgcctcga gtccggcacc
     2761 gcttgtgaaa cgcccctcgc cgacgtccga cgcgtcgcct gagtccgccc cgcccggcga
     2821 ctcgggtcgc cgccgcccgg agtccaccat gagtcattcc acgccccgcg tcacccgcat
     2881 gcaggtgatc cccgtcgccg gccgcgacag catgctgctc aacctgtgcg gcgcccacgc
     2941 gccttatttc acccgcaacc tggtgctgct cgaggacgat gcggggcgca ccggctgcgg
     3001 cgaagtaccg ggcggcgagg gcatccgcca ggcgctggag cgctgcacgg agctcgtcgt
     3061 cggccaaccg atcggtcgtt acaacaacac gctcaatcgc ctgcgccagg ccatcgccgg
     3121 cccggccgac ggcccgcaga ccacccgcca ccaggtcacc tcggacgccg aggcccgcgt
     3181 gctccagcag ccgcacgaaa tcaacctgcg cctggacaac gtgatcaccg ccgtcgaggc
     3241 cgccctgctc gacctgctcg gccagcacct gggcgtcccg gtctgcgaac tgctcggcag
     3301 cggccggcag cgcgatcatg tgccgatgct ggcgtacctc ttctatatag gggaccgtcg
     3361 acgcacggac ctgccctacc ccaccggcga aggcgccacc gacgcctggt accagctgcg
     3421 tcatcaggcg gccctgacag ccagcgatat cgcccgcctg gccgaggcgg cccacgcccg
     3481 ctacggcttc accgacttca agctcaaggg cggcgtgatg c
//
LOCUS       DATIHC010000049         2142 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35248, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000049 DATIHC010000000
VERSION     DATIHC010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2142
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35248"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1461
                     /locus_tag="VLF16_00840"
     CDS             <1..1461
                     /locus_tag="VLF16_00840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HSX69448.1"
                     /translation="RQPAEGGATAVASLGFDQVDGLQSLLHTLDSPRVHLVCTGLHNR
                     QGDCLGVLLLLHRDSGTEPVMLRPQRIAYVEAVSGVAALCIESQRLLEQQKQLLDAFI
                     QLLAGAIDAKSPYTGGHCQRVPELTLLLARAAADSTAEPFRDYSPSDEDWEALHIAAW
                     LHDCGKITTPEYVVDKATKLETLYDRIHEVRMRFEVLKRDAWVTYWEGVARGASDTEL
                     AGLRDATLAALDEEFAFVARCNLGGEAMADADLERLRQIAARTWTRTLDDRLGVSWEE
                     NQRQARTPAPSLPVREALLADKPEHLFERPASELMPADNPWGFKLEVPHYKHNRGELY
                     NLGIARGTLTAEERYIINNHIVQTILMLDHLPFPRHLENVPEIAGGHHEKMDGTGYPK
                     RLKGEQMSLPARMMAIADIFEALTAVDRPYKKGKTLSESLGIMAGMCRGAHIDPALFG
                     LFVGSGIPQVYAERHLRPEQIDAVDAGAILAKAGLY"
     gene            complement(1522..1863)
                     /locus_tag="VLF16_00845"
     CDS             complement(1522..1863)
                     /locus_tag="VLF16_00845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003244279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosome-binding protein YggL"
                     /protein_id="HSX69449.1"
                     /translation="MATNRSRRLRKKLCVDEFQELGCELTLNLREGLSEAEIDAFLDA
                     FLLDAIEGNGLGYVGGEDYGFVCLAKRGSVNEEQRSQLEAWLKGRKELSDFTLSPLLD
                     VWYPDNPIANA"
BASE COUNT          366 a          763 c          681 g          332 t
ORIGIN      
        1 cgtcagcccg ccgagggcgg cgcaaccgcg gtggcctcgc tcggcttcga ccaggtcgac
       61 ggcctgcaga gcctgctgca caccctggac agcccgcggg tgcatctggt ctgcaccggc
      121 ctgcacaacc gccagggcga ttgcctcggc gtgcttctgc tgctgcaccg cgacagcggc
      181 accgagccgg tgatgctgcg accgcagcgc atcgcctatg tggaggcggt gtccggcgtg
      241 gccgcgctgt gcatcgagag ccagcgcctg ctggaacagc agaagcagct gctggacgcc
      301 ttcatccagc tgctcgccgg cgccatcgac gccaagagcc cctacaccgg aggccattgc
      361 caacgcgtac cggagctgac cctgctgctc gcccgcgccg ccgccgacag caccgccgag
      421 ccgttccgcg actacagccc cagcgacgag gactgggagg cgctgcacat cgccgcctgg
      481 ctgcacgact gcggcaagat caccacgccc gagtacgtgg tggacaaggc gaccaagctg
      541 gagaccctgt acgaccgcat ccatgaggta cgcatgcgct tcgaagtact caagcgcgac
      601 gcctgggtga cctactggga gggcgtggcc aggggcgcaa gcgataccga gctggccggc
      661 ctgcgcgacg cgacgctcgc cgcgctggat gaagagttcg ccttcgtcgc gcgctgcaac
      721 ctgggcggcg aggcgatggc ggacgccgac ctggagcgcc tgcggcagat cgcggcgcgc
      781 acctggaccc gcaccctgga cgaccgcctc ggcgtgtcct gggaggagaa ccagcgccag
      841 gcccgcactc ccgcgcccag cctgccggtg cgcgaggcgc tgctggcgga caagcccgag
      901 cacctgttcg agcgccccgc cagcgaactg atgcccgccg acaacccctg gggcttcaag
      961 ctcgaggtgc cgcactacaa gcacaaccgc ggcgaactct acaacctcgg catcgcccgc
     1021 ggcacgttga ccgccgagga gcgctacatc atcaacaacc acatcgtgca gaccattctc
     1081 atgctcgacc acctgccgtt tccccggcac ctggagaacg tcccggagat cgccggcggg
     1141 catcacgaga agatggacgg caccggctat cccaagcgtc tcaagggcga gcagatgagc
     1201 ctgccggcgc gcatgatggc catcgccgac atcttcgagg cgctcaccgc ggtggatcgg
     1261 ccctacaaga agggcaagac gctcagcgag tcgctcggca tcatggccgg gatgtgccgc
     1321 ggcgcgcaca tcgacccggc actattcggc ctgttcgtcg gctccggcat cccacaggtc
     1381 tacgccgagc gccatctgcg tccggaacag atagacgcgg tggatgcggg cgccatcctg
     1441 gccaaggcgg gcctgtactg atcgatcgag cgcccatgaa aaagcccggc ctaggccggg
     1501 cttttcgttt gcacgcaggg atcaggcgtt ggcgatcgga ttatccgggt accagacgtc
     1561 cagcagcggg ctgagggtga agtcgctcag ttccttgcgg cccttgagcc aggcttccag
     1621 ctggctgcgt tgctcttcgt tgaccgagcc gcgcttggcc aggcagacga agccgtagtc
     1681 ctcaccgccg acatagccca gaccgttgcc ctcgatggcg tcgagcagga aggcgtcgag
     1741 gaacgcgtcg atctccgcct cgctcaggcc ctcgcgcagg ttcagggtca gctcgcagcc
     1801 cagttcctgg aattcgtcga cgcacagctt cttgcgcagg cggcgggaac ggttggtggc
     1861 catatacact cctagatact cgatggttgc acgggcggca ctctagcagg ttgaagcggc
     1921 ggctgcccgc acgttcagaa aaaagcgcaa gtcccgtcgt tcggtccccc gaggccggag
     1981 gcatcgggca taatgcgccg catcccgacc gcacctcttt tcgcccctct ttcttctggg
     2041 ccagtgccat atgatcaaaa cgctccgcag tctcctcgtc gtctccctgc tcgttcccgt
     2101 cgccctcccc ctttccgccg cccaggtcag cagcgtgctg cc
//
LOCUS       DATIHC010000050         3975 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30475, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000050 DATIHC010000000
VERSION     DATIHC010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3975)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3975)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3975
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30475"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1516)
                     /locus_tag="VLF16_00850"
     CDS             complement(<1..1516)
                     /locus_tag="VLF16_00850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013791661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminaseTgpA domain-containing protein"
                     /protein_id="HSX69450.1"
                     /translation="MTRSQTKAAQPSAVQPGAVQPIPRIALTWLLVAQVLVILPHLLH
                     LPLWIAGLWLLCAGWRVQVFRMRARFPTGIERIALVIATGAAAFFSRGSLIGLDGGAL
                     LLVATFILKLVELRSRRDGLVLIFLGFFVVVTGYLFDDGLLAALYSLLPVTALLAALI
                     GMQQSGMAERPGATVKLAASMMLQAVPLMLLLFLFFPRMGPLWSLPNPQQAMTGLSDS
                     MAPADIAELSRSPALAFRASFDGPVPERDVLYWRALTLEHFDGRRWSQSWGAEQRGKP
                     QWSGRGKPLDYSIVMQPSGRSWLFVLDVGQINEPNSVAMTDFRFESRRPVTQSLMYRA
                     TSWPEALREPELPANVRRRTLQLPEQGDPLTRAWAEKLKREHAGSDALVAALLRHFNR
                     EPYGYTLRPPPVGADSIDEFLFRTRQGFCAHYAGAMVFVLRAAGIPSRVVAGYQGGEL
                     NVSGNYLSVRQLDAHAWVEYWQEGRGWISVDPTFQVAPERIDLGAQDAYSDDEAF"
     gene            complement(1513..2469)
                     /locus_tag="VLF16_00855"
     CDS             complement(1513..2469)
                     /locus_tag="VLF16_00855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013715443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HSX69451.1"
                     /translation="MPTSLKARWRRWVVRRIPAATRVQLNQRRIFIMPDRVGAAFSVV
                     LVLMLLAGINYENSLAYGLTFLLAAVFVVAILHTYRNFAGLILKAGASGAVFAGEQAL
                     FLVRLESEGRAHMAIGLGWPPQPLQRMDVPANGQRECELSLPALRRGWLRPERMRVES
                     HFPLGILVAWSWVDLDQAVLVYPRPLEGDLPLAADGAADEEEEGRRATGQGADDYQGL
                     RSYQPGDSKRRLHWKAFSRGQGLLVKDFAALAGRDLWLDFQVLGGDVETRLSRLCYWV
                     LQLEGRQQAYGLRLPGVELSPSHGDTHRQACLRALALHGERA"
     gene            complement(2472..3389)
                     /locus_tag="VLF16_00860"
     CDS             complement(2472..3389)
                     /locus_tag="VLF16_00860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSX69452.1"
                     /translation="MRTKLDAVLHEVNQVLLGKEPQVRLALTCLLARGHLLIEDLPGM
                     GKTTLSHALARILGLSFQRIQFTSDLLPGDILGTSVFDKDSGQFVFHPGPIFAELVLA
                     DEINRATPKSQSALLEAMEEGQVTIEGATRPLPEPFFVIATQNPVSSGGTFALPESQL
                     DRFLMRLSLGYPARAAERALLLGEARREILPRLEPILDHAELAAIQALIPQVRTSDAL
                     VDYVLRLVEATRSEPQFAWGLSPRASLALLAAARAWAFLANRDYVIPEDVQAVLPAVV
                     GHRLRERADPAGHGGGALVQWLLREVPAV"
     gene            complement(3500..>3975)
                     /locus_tag="VLF16_00865"
     CDS             complement(3500..>3975)
                     /locus_tag="VLF16_00865"
                     /EC_number="1.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003449801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016646 - oxidoreductase activity, acting
                     on the CH-NH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HSX69453.1"
                     /translation="FQVISDEPPTLMVNVGSRDDGSLKDTLRNARDTRELVIQLVGMA
                     QAEAMNASSASLPHGQSEFAHCAIASEPSQRVAPPRVLGAPVVFECRVAEIQPYPRQA
                     PNCHLIFAEVLLAHIDDAVLDADGRIDPARLDLVGRLGGSAYVGTRDIFRMQRPA"
BASE COUNT          696 a         1382 c         1340 g          557 t
ORIGIN      
        1 ggaaggcctc gtcgtcggag tacgcgtcct gggcgcccag gtcgatacgc tccggcgcga
       61 cctgaaaggt cgggtcgacg ctgatccagc cgcgcccttc ctgccagtac tcgacccagg
      121 catgggcgtc gagctggcgg accgacagat agttgccgga gacattcagc tctccgccct
      181 gataaccagc caccacacga gacggaatcc cggcggcacg cagcacgaag accatggccc
      241 cggcgtaatg agcgcagaaa ccctggcgcg tgcggaacag gaattcgtcg atgctatccg
      301 ccccgacagg cggaggtctc agcgtgtacc cgtagggctc gcggttgaag tgccgcaata
      361 acgcagccac cagcgcatcg ctgccggcgt gctcacgctt gagtttttcg gcccacgcac
      421 gagtaagggg gtcgccctgc tccggcagtt gcagggtacg gcggcgaaca ttcgccggca
      481 gctccggctc gcgcaaggcc tcgggccagg aggtcgcgcg atacatcagg ctctgagtca
      541 ccggacgacg cgattcgaac cggaagtccg tcatcgccac gctgttcggc tcgttgatct
      601 gcccaacatc cagtacgaac agccaggatc tgccgctggg ctgcatgacg atgctgtagt
      661 cgagcggctt gccgcggcca gaccactgcg gcttgccccg ctgttctgcg ccccaggact
      721 gggaccagcg gcgaccatcg aaatgctcga gggtcagggc ccgccaataa aggacatcgc
      781 gctccggcac cggcccatcg aagctggccc gaaaggccag tgccggggag cggctcagct
      841 cggcgatgtc cgcaggcgcc atgctgtcgg aaagccccgt catcgcctgc tgcggattgg
      901 gcaggctcca taagggcccc atccgcggaa agaacagaaa cagcaacagc atcagcggca
      961 ccgcctgcag catcatcgaa gccgccagct tgacggtagc gcccggccgc tcggccatgc
     1021 cgctctgctg catgccgatc agcgcagcca gcagtgcagt caccggcagc aggctgtata
     1081 gcgccgcgag caaaccgtcg tcgaacaggt agccggtcac caccacgaag aagccgagga
     1141 agatcagcac cagcccgtcc cgtcggctgc gcagttccac cagtttgagg atgaaggtcg
     1201 ccaccagcag cagcgcgccg ccgtccaggc cgatcaggct gccccgcgag aagaacgcag
     1261 cggcgcccgt ggcgatcacc agcgcaatgc gttcgatgcc cgtgggaaag cgcgcgcgca
     1321 ttcggaatac ctgcacccgc cagccggcgc ataacagcca cagtccggcg atccacaatg
     1381 gcagatgcag caggtgcggc aggatcacca gtacctgcgc caccaacagc caggtcaggg
     1441 cgatgcgcgg gatcggttgg accgcacccg gttggaccgc actcggctgc gccgcttttg
     1501 tttgcgaacg ggtcatgcgc gctcaccatg caacgccagt gcacgcaggc acgcctgccg
     1561 atgggtatcg ccgtggctgg gactcagctc gacgccgggc agacgcaggc cataggcctg
     1621 ctggcggcct tcgagttgca gcacccagta gcacaggcgc gacaggcgcg tttccacgtc
     1681 gccgccgagc acctgaaagt ccagccacag gtcgcggccg gccaacgcag cgaagtcctt
     1741 gaccaacagc ccctggccgc gggaaaaggc cttccagtgc aggcgccgct tggagtcgcc
     1801 cggctggtag ctgcgcaggc cctgataatc gtcggcgccc tgcccggtcg cgcggcgccc
     1861 ctcctcttcc tcgtcggcag caccgtcggc ggccagcggc aggtcgcctt ccagcgggcg
     1921 cgggtagacc agcacggcct ggtccagatc cacccagctc caggccacca ggatgcccag
     1981 ggggaaatgg ctctccacgc gcatgcgctc cggccgcaac cagccgcggc gcagcgcggg
     2041 aaggctcagc tcgcactcgc gctggccgtt ggccggcacg tccatccgct gcagcggctg
     2101 cggcggccaa ccgaggccga tggccatgtg cgcacggccc tcgctctcca ggcgcacgag
     2161 gaaaagcgcc tgttcgccgg cgaacacggc accgctggcg cccgccttga ggatcagccc
     2221 ggcgaagttg cggtaggtgt gcaggatggc gacaacgaac acggccgcca gcagaaaggt
     2281 caggccgtag gccaggctgt tctcgtagtt gatgccggcc agcagcatca gcaccagcac
     2341 caccgaaaag gcggcaccga cccggtcggg catgatgaag atgcgccgct ggttcagctg
     2401 cacccgggtc gccgcgggaa tgcgccgcac cacccagcga cgccagcgcg ccttgagcga
     2461 cgtcggcagc atcacaccgc cggcacttcg cgcagcagcc actgcaccag cgcgccgccg
     2521 ccatggccag ccgggtcggc gcgctcgcgc aggcgatggc cgaccacggc cggcagcacg
     2581 gcctgaacgt cctcgggaat cacgtagtcg cggttggcca ggaaggccca ggcgcgcgcc
     2641 gcagccagca gcgccaggct ggcccgcggc gacaggcccc aggcgaactg cggttcgctg
     2701 cgcgtggcct cgaccaggcg cagcacgtag tcgaccagcg catcgctggt gcgcacctgc
     2761 gggatcagcg cctggatcgc cgccagctcg gcatgatcga ggattggctc caggcgcggc
     2821 agaatttccc ggcgtgcctc gccaagcagc aatgcgcgct cggcggcgcg ggcgggatag
     2881 cccagcgaca gccgcatgag gaagcggtcc agctgcgatt ccggcagggc gaaggtaccg
     2941 ccggagctga ccgggttttg cgtggcgatg acgaagaacg gctcgggcag cggacgggtg
     3001 gcgccctcga tggtcacctg gccctcctcc atcgcctcca gcagcgcgct ctggctcttc
     3061 ggcgtggccc ggttgatctc gtcggccagc accagctcgg cgaagatcgg cccggggtgg
     3121 aagacgaact gtccgctgtc cttgtcgaac accgaggtgc cgaggatgtc gccgggcagc
     3181 aggtcggaag tgaactggat gcgctggaag ctcagcccga gaatccgcgc cagggcatgg
     3241 ctcagggtgg tcttgcccat accgggcagg tcttcgatca gcaggtgccc gcgggccagc
     3301 aggcaggtca gcgccaggcg cacctgcggc tccttgccca gcagcacctg gttcacctcg
     3361 tgcagtaccg cgtccagttt cgtccgcatc gctcgctcct gttccgatcc ctggatgcta
     3421 ctggcctggg ccgatggggc aaagcgccgc gaaacagttg ctcacgaaac tgtgcggtgg
     3481 gtgggcgttg cgcggcgact caggccgggc gctgcatgcg gaagatgtcg cgggtgccga
     3541 cataggcact gccgccgagg cggccgacca gatccagccg ggcggggtcg atgcgcccgt
     3601 cggcgtccag caccgcatcg tcgatatgcg ccagcagcac ctcggcgaag atcagatggc
     3661 agttcggcgc ctgccgcggg tacggctgga tctccgccac ccggcactcg aataccacag
     3721 gcgcgcccaa tacacgcggc ggcgccaccc gctgcgaagg ctcgctggcg atggcgcagt
     3781 gggcgaattc gctctggcca tgcggcaggc tggcggacga ggcgttcatc gcctcggcct
     3841 gggccatgcc gaccagctgg atcaccagct cgcgggtgtc ccgggcgttg cgcagggtgt
     3901 ccttgaggct gccgtcgtcg cgactgccga cattgaccat cagcgtcggc ggctcgtcgc
     3961 tgatcacctg gaaga
//
LOCUS       DATIHC010000051         3206 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2467, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000051 DATIHC010000000
VERSION     DATIHC010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3206
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2467"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..232)
                     /locus_tag="VLF16_00870"
     CDS             complement(<1..232)
                     /locus_tag="VLF16_00870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69454.1"
                     /translation="MSQAKQHRVVVMTGATGGFGACAAQQIAAKPDTQLIIGARGVGR
                     TVPSGAEVIPLDLASLTSVREFAARLTERLNGA"
     gene            complement(273..1091)
                     /locus_tag="VLF16_00875"
     CDS             complement(273..1091)
                     /locus_tag="VLF16_00875"
                     /inference="COORDINATES: protein motif:HMM:NF018352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MipA/OmpV family protein"
                     /protein_id="HSX69455.1"
                     /translation="MTNRQFVRPFTLPALALLIGTPTSALLAQEQEHEDASPWRISLG
                     LGAMHAPEYLGSGESESNLLPLVSVRYKRFFLGGMPGSGLPGPGLGAYLYESDTFTLG
                     AVLTSDLSDPREESDDERLRGLGDIEATTRTGLFGSYRADWLTLSASVLSDIGGHEQG
                     TTVSLDAKATYRPLQRLQLSAGPGITWGSGDYMQTFFGIDQSQAAHSAYAPYEVGSGV
                     SLLRFSVGAQYQLADRWALGGNLTAARLQGDAADSPIVEDRNQNSYALFLMYRF"
     gene            complement(1088..>3206)
                     /locus_tag="VLF16_00880"
     CDS             complement(1088..>3206)
                     /locus_tag="VLF16_00880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004886338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSX69456.1"
                     /translation="SQTVEQYEGSMMMLYEGAFLAMLVVWLFLRDWRATLIASAALPL
                     SILPAFAAMAWFDFSLNTVTLLALAVVVGILVDDAIVEIENIERHRHMGKPIREASED
                     AVSEIALAVMATTMSLVAVFLPTALMSGIGGLVFKQFGWTAVIAVLASLLVARLLTPM
                     MAAYMLKPEPIPPHGDGRVMHWYMAAVHWCLKHRKTTVGGAVVFLIASLALIPHIETG
                     FIPPADGNSTMVSIELPPASSLQDTLHVAEEARRVLEGVAGVEHIFTTAGAAQSAGQG
                     ATQPGEVRRATLTLTFLPRGERDTQQAIERVVRERLSVIPGARFALGSGAPSEKLQII
                     LASDNSEALKASAEKVESELRGVSGLFNITSTASLERPEIIIRPDKQRAAELGVTTAA
                     IGEVVRIATSGDFDQQVARLNLDNRQVYIRTRIPDAARADTDTLANMRVQGRNGPVPL
                     SSVASISMESGPVQIDRFDRLRNTTVSADLGGTALGTAQAAAAELPSIRALPSTVKVI
                     EAGDAEIVAELGMGFIMALVVGVLCIYCVLVLLFGDFLQPITILSAIPLSIGGAFLAL
                     LVGNSLLSVPSMIGLVMLMGIVTKNSILLVDYAVMGREKGGLSLHEALIDACHKRARP
                     IVMTTIAMVAGMLPIALGLGADSSFRQPMAVAVIGGLFTSTALSLLVVPVVFTYVDGF
                     ERRLAKLFHRRPSYPPSSKEIGA"
BASE COUNT          683 a          987 c          936 g          600 t
ORIGIN      
        1 gggcgccatt gagccgctcg gtcaagcggg cggcgaattc ccggacgctg gtcagcgagg
       61 cgaggtcaag cgggatgact tccgctccgc tgggcacagt acggcccacc ccgcgcgcgc
      121 caatgatgag ctgcgtatca ggcttagctg caatctgttg cgctgcacag gccccgaagc
      181 cgcctgttgc tccggtcatg acgactacgc ggtgctgctt ggcttggctc atcgctatct
      241 gctccacctc gttgatgctg ggccggtgac cgtcagaagc ggtacatcaa gaacaacgcg
      301 tagctgttct gattcctgtc ttcgacgatg gggctatctg ctgcatcgcc ctggagacga
      361 gccgcagtga gatttcctcc taacgcccag cggtcggcca attggtactg agcgccgacg
      421 gaaaagcgca ggagcgatac gccgcttccc acctcatatg gcgcataagc cgagtgcgca
      481 gcctggctct gatcaatgcc gaagaatgtc tgcatgtagt caccgcttcc ccaggtgatt
      541 ccgggcccgg cggacagctg caggcgttgc aaagggcgat aggtcgcctt cgcatcaagg
      601 ctcacggtgg tgccttgctc atgaccgccg atgtcggaca gcacactcgc gctcagcgtt
      661 agccaatcgg cgcgataact gccaaatagg cctgtacgag tcgtcgcctc gatatcgcct
      721 agtcctcgca agcgctcgtc atccgactct tctcgcggat cgctcagatc gctcgtgagc
      781 acggccccta atgtgaaggt atcgctttcg tacagatatg cgcccagtcc cggaccggga
      841 agtcccgacc caggcatccc gcccaggaag aagcgcttgt agcgcacgct caccagcggc
      901 aatagattcg actcggactc gccgctgccc aaatactcag gagcatgcat cgcccctagt
      961 cccaggctta tccgccaggg ggaagcgtcc tcgtgctcct gctcttgcgc cagcaatgcg
     1021 cttgtcggcg tgccgattaa caaagccaga gcaggaagcg tgaacggtcg gacaaactgt
     1081 ctgttggtca tgcaccgatc tccttagatg acggcggata tgaggggcgg cggtggaaca
     1141 gcttcgccag cctgcgttcg aaaccatcta cgtaggtaaa caccaccggc accaccagaa
     1201 gactgagtgc cgtcgaggta aacagtcccc caatcacagc gaccgccatg ggttggcgaa
     1261 agctggaatc cgcgccgagc ccgagcgcga tgggcaacat gccggcaacc atagcgatgg
     1321 tcgtcatgac aattggccga gcacgtttgt ggcaggcatc gatcagtgcc tcgtgcagag
     1381 acaggccacc tttctccctc cccatgacgg cgtagtccac gagtaggatc gagttcttgg
     1441 tgacaattcc catgagcatc accaggccga tcatcgaagg cacgctcagc aggctgttac
     1501 ctaccaacaa cgcaaggaag gcaccgccga tggacaaggg aatggctgaa aggatggtga
     1561 tgggttggag aaaatcaccg aatagcaata ccaggacgca gtagatgcag agcacaccaa
     1621 ccaccagcgc catgatgaag cccatgccca actccgccac aatctctgca tcgcccgcct
     1681 caatcacctt gacggtggag ggcaacgcac gaatcgatgg gagctcggct gctgcagcct
     1741 gagcggttcc caaagcggtt ccaccaagat cggcagacac cgtggtattg cggaggcggt
     1801 cgaaacggtc gatctgaacg gggccactct ccattgagat gctggcaacg cttgaaagtg
     1861 gaacaggccc gttacgccct tgaacgcgca tgttcgctag cgtgtcggta tctgcacggg
     1921 ccgcatcggg aatgcgcgtg cggatataga cctgacgatt gtcgaggtta aggcgtgcga
     1981 cctgctgatc gaaatcgcca ctggtggcga ttcgcactac ttcgccgatt gctgcggtgg
     2041 tcacaccgag ttcggcggct cgctgcttgt ccggtcggat gatgatttca gggcgttcga
     2101 ggctggcggt agaggtaatg ttgaaaagcc cgctgacccc acgaagctcg gactcaacct
     2161 tctcggcact tgccttgagt gcctcggagt tgtcgctggc gagaatgatc tggagctttt
     2221 cgcttggcgc cccacttccc aatgcaaagc gtgcgcccgg gatgaccgac agacgctcac
     2281 ggacaacacg ctcgatggcc tgctgggtat cgcgctcgcc acgaggcaag aacgttagcg
     2341 tcagcgttgc acggcgaacc tcgccaggct gcgtcgcacc ctgtcctgca ctctgtgcgg
     2401 ctccggcggt ggtgaagatg tgctctacgc cggctactcc ctccagcact cgacgggcct
     2461 cctccgccac atgcaacgtg tcttgcagcg aactggcagg cggcaactca atgctcacca
     2521 tggtgctatt gccatcagca ggagggatga aaccggtctc gatgtgggga ataagcgcta
     2581 gggaggcaat caggaaaaca acagcgccgc cgaccgttgt ctttcggtgc tttagacacc
     2641 aatggactgc tgccatgtac caatgcatta ctcggccatc gccgtgcgga ggtatcggtt
     2701 ctggcttgag catgtacgcc gccatcatcg gcgtaagcaa ccgggccacc agcagcgaag
     2761 ccagtaccgc aattaccgca gtccaaccaa attgcttgaa caccagaccg cctataccgc
     2821 tcatcaaggc ggtcggcagg aagaccgcaa ccaggctcat ggttgtagcc atcaccgcga
     2881 gcgcaatctc gctaacggca tcttccgatg cctcgcgaat cggcttaccc atgtgccggt
     2941 ggcgctcgat gttctcgatc tcaacgatcg catcgtcgac caggatgcca accactaccg
     3001 ccaaggccag aagcgtgacg gtgttgagcg agaagtcgaa ccacgccatt gctgcgaacg
     3061 ccggcaggat tgacagtggc agagccgccg aagcgatcag cgttgctcgc caatcgcgta
     3121 ggaatagcca gacgaccaac atggccagaa aggcgccctc atacagcatc atcatcgagc
     3181 cttcgtactg ctcgaccgtt tggctg
//
LOCUS       DATIHC010000052         1726 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_87, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000052 DATIHC010000000
VERSION     DATIHC010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1726
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            196..1191
                     /locus_tag="VLF16_00885"
     CDS             196..1191
                     /locus_tag="VLF16_00885"
                     /inference="COORDINATES: protein motif:HMM:NF015445.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialic acid TRAP transporter substrate-binding
                     protein SiaP"
                     /protein_id="HSX69457.1"
                     /translation="MTRLTAFALVAVSTLALSGAAFAQDKLELKYTVPSVPTDLHTQA
                     MKVFADKLEELSPGRFDTQLYDSGSLFAQGADLDALQRGNAEMTYVSYQLIADAIPEY
                     GLLTAGYLFQSPEHYRAFLASDIGAEFKQRVSDDMGIQLLDACYLGTRQVNLRTARDV
                     QTPADLAGVKLRMPSSDAWLFLGQALGANPTPLPFGEVYLGLQAGTVDGQDNPLPSVE
                     AAKFYEVTEQIVLTSHLVDAINVAVNNQTWEQLTDDEKSAMTEAAIASCDWNNEMRLA
                     DEARLVSFFEEQGLSVTTPDVDAFRSHVQDFYLNSDRAASWPEGWIEQINALATE"
     gene            1195..1704
                     /locus_tag="VLF16_00890"
     CDS             1195..1704
                     /locus_tag="VLF16_00890"
                     /inference="COORDINATES: protein motif:HMM:NF016200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HSX69458.1"
                     /translation="MTDYSASVRRMPTWLRVLKEGADLIGVLLFTTAFLGFIVQIFFR
                     YVVNRPILWTEEVTMIAFVWTVFWTAAFIVNIREHVAFDVVYETLSPQAKRVAAIFSM
                     VVLIATFLLLIPATWDYLEFLLRRKSPVLRIPMTWIYGCYLLFVVNFTIQAAVRLWRL
                     FTPDWGKQI"
BASE COUNT          322 a          580 c          456 g          368 t
ORIGIN      
        1 gtaatcacgc ctttgaggtc tgcggctgcc aagagaatct ccttatcaag caactgatac
       61 aatcagtcag cgcatcaatt gataaatcac tgtttacatg agtgtcgcgt ttatgcaagg
      121 tactaccatt caagtgcacc aggtctgggg agacagggtg caactcggtc catttgccct
      181 tggaggaggg atcccatgac ccgtcttacc gcgtttgctc tcgtcgccgt ttctacgctc
      241 gccctcagcg gcgccgcctt cgcccaggac aagctcgagc tcaaatacac cgtgccgagc
      301 gtccccacgg acctccacac ccaggccatg aaggtctttg ccgacaagct cgaagagctg
      361 tcgccgggtc gtttcgacac ccagctctac gattcgggtt cgctgttcgc ccaaggcgcc
      421 gacctcgacg cgctgcagcg tggcaatgct gaaatgactt acgtctccta ccagctgatc
      481 gccgatgcca ttcccgaata tggcctgctt actgccggat acctgttcca gagcccggag
      541 cattaccgtg cgttcctcgc cagcgacatc ggcgccgaat tcaagcagcg cgtgtccgac
      601 gacatgggca tccaattgct cgatgcctgc tatctgggca cccgccaggt gaacctgcgc
      661 accgcccgcg acgtccagac cccggccgat ctggccggcg tgaagctgcg catgccttcg
      721 tccgacgcgt ggttgttcct cggtcaggcg cttggcgcaa acccgacccc gctgccgttc
      781 ggtgaagtct atctcggcct ccaggccggc acggtcgatg gccaggacaa cccgctcccg
      841 tccgtggaag cggccaagtt ctatgaagtc accgagcaga tcgttctcac cagccacctc
      901 gtcgacgcca tcaacgtggc cgtcaacaac cagacctggg aacagctcac ggacgacgaa
      961 aagtccgcca tgaccgaggc tgccattgcc tcgtgcgact ggaacaacga gatgcgtctg
     1021 gccgacgaag cacgccttgt ctccttcttc gaagagcagg gccttagtgt taccactcct
     1081 gacgtcgatg cgttccgcag ccatgtgcag gacttctacc tcaattccga ccgcgctgct
     1141 tcctggccgg aaggctggat cgagcagatc aacgccctcg ccaccgagta agacatgact
     1201 gactattccg catccgtgag gcggatgccg acatggctgc gggttcttaa ggagggcgcc
     1261 gatctcatcg gcgtccttct cttcaccaca gctttcctcg gcttcatcgt ccagatcttc
     1321 ttccgctacg tcgtcaatcg gcccatcctg tggaccgagg aagtgacgat gatcgccttt
     1381 gtctggaccg tgttctggac agccgcattc atcgtcaata tccgggaaca cgtggccttc
     1441 gacgtcgtct acgagaccct ctcaccgcag gcaaagcgcg tcgccgccat cttttcgatg
     1501 gtcgtgctca tcgccacctt tctgctgctg atccccgcca cctgggacta tctcgaattc
     1561 ctcctgcgcc gcaaaagccc ggtcctgcgc attcccatga cctggatcta cggctgctac
     1621 ctgctgttcg tggtcaattt caccattcag gccgctgtgc ggctctggcg cctgttcacg
     1681 cccgactggg gcaagcagat ctagcgccgc gcgaggtcca ttatgc
//
LOCUS       DATIHC010000053         3945 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_44427, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000053 DATIHC010000000
VERSION     DATIHC010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3945
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44427"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1293)
                     /locus_tag="VLF16_00895"
     CDS             complement(<1..1293)
                     /locus_tag="VLF16_00895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019691365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HSX69459.1"
                     /translation="MTHKNNEDLHRQASENTLGLNPVIGLRGKDLLTSARMVLAQAIK
                     QPLHSAKHVTHFAFELKNVLLGQSELLPEDGDRRFADPAWSQNPLYRRYLQTYLAWRK
                     ELHEWIEDSNLSEQDTSRGHFVVNLMTEAFAPSNSMAHPAAVKRFFETGGKSLLDGLS
                     HLAKDLVNNGGMPSQVKMDAFEVGKNLATSEGAVIFRNDLLELIQYKPITEQVHERPL
                     LVVPPQINKFYVFDLSPEKSVARFLLRNHVQTFVVSWRNPTKAQREWGLSTYIEALKE
                     AIDVVTAITGSKDVNMLGACSGGITTASLLGHYAAIGEQKVNSLTLLVSVLDTKLDTQ
                     VALFADEKTLEAAKRRSYQAGVLEGKDMAKVFAWMRPNDLIWNYWVNNYLLGNEPPVF
                     DILYWNNDTTRLPAALHGDLIELFKTNPLTRPNALEVCG"
     gene            complement(1563..1934)
                     /locus_tag="VLF16_00900"
     CDS             complement(1563..1934)
                     /locus_tag="VLF16_00900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF971 domain-containing protein"
                     /protein_id="HSX69460.1"
                     /translation="MRIPTAIKLHKASRTLELAYGEERYRLGAEFLRVHSPSAEVQGH
                     GKPILQHGKQNVALSRVEPAGNYALKLCFDDGHDSGLYTWDYLYQLATRQDQLWADYL
                     EQLAAAGKSRDPSESVVRLML"
     gene            complement(1988..3328)
                     /gene="hslU"
                     /locus_tag="VLF16_00905"
                     /pseudo
     CDS             complement(1988..3328)
                     /gene="hslU"
                     /locus_tag="VLF16_00905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253741.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
     gene            complement(3352..3888)
                     /gene="hslV"
                     /locus_tag="VLF16_00910"
     CDS             complement(3352..3888)
                     /gene="hslV"
                     /locus_tag="VLF16_00910"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004298 - threonine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0051603 - proteolysis involved in protein
                     catabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HSX69461.1"
                     /translation="MTTIVSVRRNGKVIMGGDGQVSLGNTVMKGNAKKVRRLYHGQVL
                     AGFAGATADAFTLFERFEGQLEKHQGHLVRAAVELAKDWRTDRSLSRLEAMLAVANKD
                     ASLIITGNGDVVEPEHGLIAMGSGGGFAQAAAMALLQKGGAELSAREIAETALNIAGS
                     ICVFTNQNLTLEELDSAV"
BASE COUNT          582 a         1195 c         1394 g          774 t
ORIGIN      
        1 gccgcagact tccagggcgt tgggccgggt cagcgggttg gtcttgaaca gctcgatcag
       61 atcgccgtgc agggcggcgg gcaggcgggt ggtgtcgttg ttccagtaga ggatgtcgaa
      121 caccggcggc tcgttgccca gcaggtagtt gttgacccag tagttccaga tcaggtcgtt
      181 ggggcgcatc caggcgaaca ccttggccat gtccttgccc tccagcacgc cggcctggta
      241 cgagcggcgc ttggcggcct cgagggtctt ctcgtcggcg aacagggcga cctgggtgtc
      301 cagcttggtg tcgagcacgc tgaccagcag ggtcagcgag ttcaccttct gctcgccgat
      361 ggccgcgtag tggccgagca gcgaggcggt ggtgatgccg ccggagcagg cgccgagcat
      421 gttgacgtcc ttgctgccgg tgatggcggt gaccacgtcg atggcttcct tgagcgcctc
      481 gatgtaggtc gacaggcccc actcgcgctg cgccttggtc gggttgcgcc agctcaccac
      541 gaaggtctgc acgtggttgc gcaggaggaa gcgcgccacg ctcttctccg gcgacaggtc
      601 gaacacgtag aacttgttga tctgcggcgg caccaccagc agcggacgct cgtgcacctg
      661 ctcggtgatc ggcttgtact ggatcagctc cagcaggtcg ttgcggaaga tcaccgcgcc
      721 ttcgctggtc gccaggttct taccgacctc gaaggcgtcc atcttcacct ggctgggcat
      781 gccgccgttg ttgaccaggt ccttggccag gtgcgacagg ccgtcgagca ggctcttgcc
      841 gccggtttcg aagaagcgct tcacggcggc cgggtgggcc atgctgttgc tcggggcgaa
      901 ggcttcggtc atcaggttga cgacgaaatg gccgcggctg gtgtcctgct cggagaggtt
      961 gctgtcctcg atccactcgt gcagctcctt gcgccaggcc aggtaggtct gcaggtagcg
     1021 gcggtacaac gggttctggc tccaggccgg atcggcgaag cggcggtcgc cgtcttccgg
     1081 gagcagttcg gactggccga gcagcacgtt cttcagctcg aaggcgaaat gggtgacgtg
     1141 cttggcgctg tggaggggtt gcttgatggc ctgggccagc accatccggg cagaggtgag
     1201 tagatccttg ccgcgcaagc cgatcaccgg gttcagaccc aaggtgtttt ccgaggcttg
     1261 gcgatgcagg tcttcattat tcttgtgggt catctacgac gctccattgt cctgagacga
     1321 ataccaacca ctgtgaagct ggtactgctc gggttaccgg gtgcggaacg aactccgcgc
     1381 tttcttggca tttgcagtgg gcaaatgcat ggaacctgcc agttccttgg ttacccgagt
     1441 ttcccttttt gcgcaagctc agcgagggcc ggctacacgg cgcgcgcgag tatgccgagc
     1501 gcgattagaa aatgcgccct aggcgtgaag gcaatgtgac ggggaggcgt ctcggcgacg
     1561 gcctagagca tcaggcgtac gaccgactcg ctgggatcgc gcgacttgcc ggcggcggcc
     1621 agctgctcga ggtagtcggc ccacagctga tcctggcggg tggcgagctg gtagaggtag
     1681 tcccaggtgt acaggccgct gtcgtggccg tcgtcgaagc acagtttcag tgcgtagttg
     1741 ccggccggct cgacgcggct cagggccacg ttctgcttgc catgctggag gatcggcttg
     1801 ccatggccct gcacctcggc cgagggcgaa tgcacgcgca ggaactcggc gcccaggcga
     1861 tagcgctcct cgccataggc cagctccaga gtgcgggagg ccttgtgcag cttgatggcg
     1921 gtgggtatgc gcatgagcgg gagtcctgca ggcggggtgg acgagcatta tccaccccgc
     1981 ggcggcatca gagaatgtag cgagacagat cctcgtcctg cgccagctca ccgaggtggc
     2041 cgttgacgta ggcggcgtcg atgcggatcg gctcgccgtt ctgctggccg gccaggtcgc
     2101 cagcgctgaa ggagacctcc tccagcaggc gctcgagcag ggtgtgcagg cggcgggcgc
     2161 cgatgttctc ggtcttctcg ttgacctgcc aggcgatctc ggcgatgcgc ttgatcgcgt
     2221 ccggctggaa ttcgatgtgc aggccctcgg tcttgagcag ctcgctgtac tgctcggtga
     2281 gcgccgcgtg gggctcggtg aggatgcgct cgaagtcttc cggcgacagt gccttgagct
     2341 cgacgcggat cggcaggcgg ccctgcagtt ccggcaccag atcgctgggc ttgctcaggt
     2401 ggaaggcgcc ggaggcgatg aacaggatat ggtcggtctt gaccatgccc agcttggtgt
     2461 tgacggtgca gccctcgatc agcggcagca ggtcgcgctg cacgccctcg cgggacacgt
     2521 ccgcgccgcc cgcgttggcg cgctaggcga ccttgtcgat ctcgtcgatg aagacgatgc
     2581 cgtgctgttc gaccgcttcc agggcgcggg ccttgagctc ttcctcattg accaggcgcg
     2641 cggcttcctc gtcgcggacc atcttcaggg cgtccttgac cttcagcttg cgggtcttct
     2701 tcttgccctt ggtcaggccg gagaacaggt tctgcagctg gctggtcatc tcctccatgc
     2761 ccggcggggt catgatctcc acgccggccg gttgctcggc cacctcgatg tcgatctcct
     2821 tgtcgtccag ctggccctcg cgcaggcgct tgcggaacag ctggcgggtg ttggaatcct
     2881 ggctcggcgt cgggtcgtcg ttgaagccaa cgcgggccgg cggcagcagc gcgtcgagga
     2941 tgcggtcctc ggcggcgtct tcggcgcggt gctgcatctt ctgcacttcc tgctcgcgca
     3001 gcagcttgag cgcggcgtcg gccaggtcac ggatgatcga ctcgacgtcg cggccgacgt
     3061 agccgacctc ggtgaacttg gtggcctcga ccttgaggaa aggcgcgttg gccagcttgg
     3121 ccaggcggcg ggcgatttcg gtcttgccga cgccggtcgg gccgatcatc aggatgttct
     3181 tcggggtcac ttcctggcgc agctccgcgg gcagctgcat gcgtcgccag cggttgcgca
     3241 gagcgatggc aacggcacgc ttggcgtcgt cctggccgat gatgtggcgg tccagttcgg
     3301 acacgatttc gcggggtgtc atgggcatat cggggctcca gcaggcgcgg ctcagacggc
     3361 cgagtccagc tcctcgagag tcaggttctg attggtgaac acgcagatgg agccggcaat
     3421 gttcaatgcg gtttcggcaa tctcgcgggc ggagagttca gcgccgccct tctgcagcag
     3481 ggccatggcc gccgcctggg cgaagccgcc gccggagccc atggcgatca ggccgtgctc
     3541 gggttcgacc acgtcgccgt tgccggtgat gatcagcgag gcgtccttgt tggccaccgc
     3601 cagcatggcc tcgaggcggc tcaggctgcg gtcggtgcgc cagtccttgg ccagctcgac
     3661 ggccgcgcgc accaggtggc cctgatgttt ctccagctga ccctcgaagc gctcgaacag
     3721 ggtgaaggcg tcggcggtgg cgccggcgaa accggccagc acctggccgt ggtagaggcg
     3781 gcgcaccttc ttggcgttgc ccttcatcac ggtgttgccg agggacacct ggccgtcgcc
     3841 gcccatgatg actttgccgt tgcggcggac tgaaacgatg gtggtcaaga gtggatctcc
     3901 acgcagcggg gcaaaagtgc ccgaatggag atcagatggg gtgcc
//
LOCUS       DATIHC010000054         1955 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4869, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000054 DATIHC010000000
VERSION     DATIHC010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1955
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4869"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..134
                     /locus_tag="VLF16_00915"
     CDS             <1..134
                     /locus_tag="VLF16_00915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013983768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HSX69462.1"
                     /translation="RGLTNKLLHAPSVQLKKISADGRFEALAVAQELFALDEGPSKT"
     gene            131..1213
                     /gene="prfA"
                     /locus_tag="VLF16_00920"
     CDS             131..1213
                     /gene="prfA"
                     /locus_tag="VLF16_00920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003151675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HSX69463.1"
                     /translation="MKASLLKKLDILHDRFEELTALLGDAEVISDQTRFRAYSKEYAE
                     VEPVIAAYREFRKTQDDLEGAQALLKDGDAEMREMAEEEVAQAKEALVGLEDRLQRML
                     LPKDPNDGRNVFLEIRAGTGGDEAALFAGDLFRMYSRYAERQGWRVEILSESEGEHGG
                     YKEVISRVEGDNVYAKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQAIE
                     INPAELRVDTYRASGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRAKAMAWL
                     AAKLQDQQDAAAHKEISDTRKLLVGSGDRSERIRTYNFPQGRVTDHRINLTLYSLNEV
                     IGGAVEQVIEPLLQEYQADQLAALGD"
     gene            1472..1594
                     /locus_tag="VLF16_00925"
     CDS             1472..1594
                     /locus_tag="VLF16_00925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69464.1"
                     /translation="MKSGECHAVLPNEVIGGAAQPVIEPLLQEYQADQLAALGD"
     gene            1802..>1955
                     /locus_tag="VLF16_00930"
     CDS             1802..>1955
                     /locus_tag="VLF16_00930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-(glutamine-N5) methyltransferase,
                     release factor-specific"
                     /protein_id="HSX69465.1"
                     /translation="MASIQFLIDSTALPASPSARLDVELLLAAALGKPRSYLRTWPEH
                     EPSAEQL"
BASE COUNT          367 a          669 c          648 g          271 t
ORIGIN      
        1 cccgcggcct gaccaacaaa ctgctgcacg cgcccagcgt gcagctgaag aaaatctccg
       61 ccgacggccg cttcgaagcg ctggccgtgg cccaggaact ctttgccctc gacgagggcc
      121 cgagcaagac atgaaagcct ccctgctgaa gaaactcgac atcctccacg accgcttcga
      181 ggagctcacc gcgctgctcg gcgatgccga ggtgatcagc gaccagaccc gcttccgcgc
      241 ctattccaag gaatatgctg aggtcgagcc ggtcatcgcc gcctaccgcg agttccgcaa
      301 gactcaggac gacctcgagg gcgcccaggc gctgctcaag gacggcgacg cggaaatgcg
      361 cgagatggcc gaagaggagg tggcccaggc caaggaggcg ctggtcgggc tggaggaccg
      421 cctgcagcgg atgctgctgc ccaaagaccc caacgacggt cgcaacgtgt tcctggagat
      481 ccgcgccggc accggcgggg acgaggcggc tctgttcgcg ggcgacctgt tccgcatgta
      541 ttcgcgctat gccgagcgtc agggctggcg ggtcgagatc ctctccgaga gcgagggcga
      601 gcacggcggc tacaaggaag tcatcagccg cgtcgagggt gacaacgtct acgccaagct
      661 caagttcgag tccggcgccc accgcgtaca gcgcgtgccg gagaccgagt cccaggggcg
      721 catccacacc tccgcctgca ccgtcgccgt gctgccggag ccggacgagc agcaggccat
      781 cgagatcaac ccggccgagc tgcgcgtgga cacctaccgc gcctcgggcg ccggcggcca
      841 gcacgtgaac aagaccgact cggcgatccg catcacccac ctgcccaccg gcatcgtcgt
      901 cgagtgccag gaggagcgtt cgcagcacaa gaaccgcgct aaggccatgg cctggctggc
      961 ggccaagctg caggaccagc aggacgccgc cgcgcacaag gaaatctccg atacgcgcaa
     1021 gctgctggtg ggctccggcg accgctccga gcgcatccgc acctataact tcccgcaagg
     1081 gcgggtcacc gatcaccgca tcaacctgac cctctattcg ctgaacgaag tgatcggcgg
     1141 cgccgtagag caggtgatcg agccgctgct gcaggaatac caggccgacc agctggccgc
     1201 cctgggcgat tgattggccg gttgcggtgc gcgcggcgcc ccgccccaca ccacgtaggg
     1261 tgcgccgtgc gcaccggtag cccggatgaa atccgggaaa tgccatttcc gtattgccga
     1321 acgaagtgat cgcggcgcgg cgcagccggt gatcgagccg ctgcagggga aataccaggg
     1381 accgccctgg gcgattgatt ggccggttgc ggtgcgtacg gcgcgcccga cccacaccac
     1441 gtagggtgcg ccatgcgcac cggtagcccg gatgaaatcc ggggaatgcc atgccgtatt
     1501 gccgaacgaa gtgatcggcg gcgcggcgca gccggtgatc gagccgctgc tgcaggaata
     1561 ccaggccgac cagctggccg ccctgggcga ttgattggcc ggttgcggtg cgtacggcgc
     1621 gcccgaccca caccacgtag ggtgcgccat gcgcaccggt agcccggatg aaatccggga
     1681 atgcacgaac ccattattcc ctctcccctc gggggagagg gttagggaga ggggactgcc
     1741 gttagcgccc ttttcccagc ccttcttcct ccagtgggag aaggggagag gagatccccg
     1801 catggccagc atccaattcc tgatcgacag caccgcactg cccgcctcgc cgagcgcgcg
     1861 gctggatgtc gagctgctgc tggccgccgc cctcggcaaa ccgcgcagct acctgcgcac
     1921 ctggccggag catgagccaa gcgccgagca gctgg
//
LOCUS       DATIHC010000055         1578 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30495, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000055 DATIHC010000000
VERSION     DATIHC010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1578
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30495"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..123)
                     /locus_tag="VLF16_00935"
     CDS             complement(<1..123)
                     /locus_tag="VLF16_00935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIM24 family protein"
                     /protein_id="HSX69466.1"
                     /translation="MPSHKLDYEILGASAQSVEIILDPGETVIAEAGVMNYMTEG"
     gene            complement(256..915)
                     /locus_tag="VLF16_00940"
     CDS             complement(256..915)
                     /locus_tag="VLF16_00940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019406639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1 family protein"
                     /protein_id="HSX69467.1"
                     /translation="MEHSVFERQGQLTDRIVSPGAYNLIIGLTLLWGFLINAWMVGNI
                     SVEWIRSINSWVFFGGYFASCLLGVYLFSRSSHPAVSFIGYNLVVVPFGLVVNLVVSR
                     YSPELVQQAIRITALVTVAMMVLGTLFPAFFQRIASALCIALLLVIVVELVEIFVFGV
                     HHGILHWIVVLIFCGYIGYDWGRANQIPKTVDNAIDSAAALYMDIINLFLRILRILGR
                     K"
     gene            complement(1052..>1578)
                     /locus_tag="VLF16_00945"
     CDS             complement(1052..>1578)
                     /locus_tag="VLF16_00945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine/phenylalanine carboxypeptidase
                     domain-containing protein"
                     /protein_id="HSX69468.1"
                     /translation="STVTQEGLAILMEVIAFASYPTRLRKLTNRTRAIHMAEEGADFL
                     QVFEFYREQGYGMEESYGNASRVFRGSTPDGLPFTKDLSYLKGFILIYNYIQLAVRKG
                     KLEQIPLLFCGKTTLEDMRTLRQLVDEGLVAPPKYLPPQFRDLNALATWMCFSNFLNH
                     LSLDRIEADYANIL"
BASE COUNT          301 a          475 c          516 g          286 t
ORIGIN      
        1 gccttcggtc atgtagttca tcaccccggc ctcggcgatc accgtctcgc ccggatcgag
       61 gatgatttcg acactctgcg ccgaggcgcc gaggatttcg tagtcgagct tgtggctggg
      121 cacgttggct ccttgaatga gcgagggtgg atgacgttag ctacgactgc gcagaggcga
      181 tcctctgcat cggtccgcca acgcagcggc aaacggatac agggctccgg tagcaggcgc
      241 cgcgccgcca accgattatt tgcgcccgag tatccgcagg atgcgcagga acaggttgat
      301 gatgtccatg tacagcgcgg cggcgctgtc gatggcgttg tccacggtct tggggatctg
      361 gttggcacgc ccccagtcgt agccgatgta gccgcagaag atcagcacca cgatccagtg
      421 gaggatccca tggtggacgc cgaacacgaa gatttccacc agctccacca cgatcaccag
      481 cagcaacgcg atacacagcg ctgacgcgat ccgctgaaag aacgccggga acagcgtgcc
      541 cagcaccatc atcgccacgg tcaccagcgc cgtgatgcga atcgcctgct gcaccagttc
      601 cgggctgtag cggctgacca ccagattgac gaccaggccg aacggcacca ccaccaggtt
      661 gtagccgatg aaactcactg ccgggtggct ggaacggctg aacaggtaga cgccaagcaa
      721 gcacgaggcg aagtaaccgc cgaagaacac ccagctattg atgctgcgta tccactccac
      781 actgatgttg cccaccatcc acgcattgat gaggaagccc cagagcaggg tcaggccgat
      841 gatcaggttg taggcgcccg ggctgacgat ccggtcggtc aattgccctt gccgttcgaa
      901 taccgaatgt tccatgtcgt actccctgta cgtggtgggc gctccggccg cgcaggatgt
      961 gaaaacgaca tcccgccgcg gggcctgtgt gcctatgtat gagtgttgtc gtgagacggc
     1021 ccgcgccgct gcgggccgag ctgcagccgg gtcagaggat gttggcgtag tcggcttcga
     1081 tcctgtccag gctgaggtgg ttgaggaagt tggagaagca catccaggtc gccagtgcgt
     1141 tgaggtcgcg gaactgcggc ggcaggtact tgggcggcgc caccagcccc tcgtccacca
     1201 gctggcgcag ggtgcgcatg tcttccaggg tggtcttgcc gcagaacagc agcggaatct
     1261 gctccagctt gcccttgcgc acggcgagct ggatgtagtt gtagatcagg atgaagccct
     1321 tcaggtagga caggtccttg gtgaacggca ggccgtccgg ggtggagccg cggaacaccc
     1381 ggctggcgtt gccgtagctc tcctccatgc cgtagccctg ctcccggtag aactcgaaca
     1441 cctgcaggaa gtcggcgccc tcctcggcca tgtggatggc gcgggtgcgg ttggtcagtt
     1501 tgcgcaggcg cgtggggtag gaggcgaagg cgatcacttc catgaggatg gccaggcctt
     1561 cctgggtcac cgtcgacg
//
LOCUS       DATIHC010000056         1917 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11801, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000056 DATIHC010000000
VERSION     DATIHC010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1917)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1917)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1917
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11801"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..451
                     /locus_tag="VLF16_00950"
     CDS             <1..451
                     /locus_tag="VLF16_00950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012701092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HSX69469.1"
                     /translation="LNAAPMHDVGKIGIPDAILQKNGKLDEAEWAVMRQHAQIGAEII
                     GEHDSGLLKTARIIALTHHEKWDGSGYPNGLKGEEIPLAGRIVAIADVFDALTSVRPY
                     KPAWSLDDALDLLRRESGRHFDPELVELFIGQLPAILEVKERWAEAG"
     gene            559..1281
                     /locus_tag="VLF16_00955"
     CDS             559..1281
                     /locus_tag="VLF16_00955"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012076288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HSX69470.1"
                     /translation="MSQIVNRTVRYEIGGQLFEGQLLYDDSRSALRPGLLLTPNWMGV
                     AAGVIEMATRVAQRGYVVFVADVYGVGVRPQNHDEAAAAMMSVKGTPALRQRLQASLD
                     TLKAQPGVPLDTSRMAVFGFCFGGHCALELARHGAPLQAAISFHGTLDTADPADAKNI
                     RGAVLVLDGAEDPLVPREQLVGFAAEMSAAGVDWQLTSYGGAAHSFTDPQANVPGKMQ
                     YDAKVSRRAFAAMYALLDEVFA"
     gene            complement(1288..>1917)
                     /locus_tag="VLF16_00960"
     CDS             complement(1288..>1917)
                     /locus_tag="VLF16_00960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69471.1"
                     /translation="PRLYLHHEPNEASRSKAYLIEGDICEVLAHQGQWLQIRYASRKG
                     PLERWVSLDRAYDLRKRYRAGPHPDGLSLSVSDFSDPASPLFSLGLSAERPLTLEHAE
                     VHLLFIAADGTRRSHRLYAANHRIELAASGGHLLDDNYIERRDGRLAIYHPDEQQQDA
                     YVPFFPDLAPGRYRVRVALTDPALAAPLYTAEEVTLDYPPAITESTDAP"
BASE COUNT          305 a          627 c          675 g          310 t
ORIGIN      
        1 gctgaatgcc gcgcccatgc acgatgtcgg caagattggc atccccgatg ccatcctgca
       61 gaagaacggc aagctcgacg aggccgaatg ggccgtgatg cgccagcatg cgcagatcgg
      121 cgcggagatc atcggcgagc atgattcggg tctgctgaag acggcgcgga tcatcgccct
      181 gacccatcac gagaaatggg acggcagcgg ttatcccaac ggtctgaagg gcgaggagat
      241 accgctggca gggcgtatcg tcgccatcgc cgacgtgttc gacgctctca ccagcgtgcg
      301 tccgtacaag ccggcctggt cgctggacga tgcgctggat ctgcttcgcc gcgagagcgg
      361 tcgccacttc gatccggagc tggtggagct attcatcggc cagttgccgg cgattctcga
      421 ggtcaaggag cgctgggcgg aagcgggcta gcgcctcgcc ccgggccgat gccctcaggc
      481 gcggcgggtg ccgggatgac gaaccggcag aattggctag tcttctccgt tcgatgtccc
      541 gaccgaaaag gagaaaacat gagccagatc gtcaaccgta ccgtgcgata cgagatcggt
      601 ggccagctgt tcgagggcca actgctgtac gacgattccc gctctgcact gcgccccggg
      661 ctgctgctga cccccaactg gatgggggtg gccgcaggcg tgatcgagat ggccacacgg
      721 gtggcccagc gcggttacgt ggtgttcgtc gccgatgtct atggcgtggg cgtgcgcccg
      781 cagaaccacg acgaagccgc cgcggcgatg atgtcggtga agggcacgcc ggccctgcgc
      841 cagcgcctgc aggcgtcgct cgacaccctc aaggcccagc ccggcgtgcc gctggatacc
      901 agccgcatgg ccgtcttcgg cttctgcttc ggcggccact gcgccctcga gctggcccgc
      961 cacggtgcgc cactccaggc cgcgatttcc ttccacggta ccctggacac cgccgacccg
     1021 gcggacgcca agaacatccg cggcgcggtg ctggtgctgg acggcgccga ggacccactg
     1081 gtgccccgcg agcagttggt gggcttcgcc gcggagatga gtgccgccgg ggtcgactgg
     1141 cagctgacca gctacggcgg cgccgcgcat tccttcaccg acccgcaggc caacgtgccg
     1201 ggcaagatgc agtacgacgc caaggtgtcg cgccgcgcct tcgccgcgat gtacgcactg
     1261 ctcgacgagg tcttcgccta gtcggcatca gggcgcgtcg gtgctctcgg tgatcgcggg
     1321 cggatagtcc agcgtcactt cctcggccgt gtacagcggc gccgccaggg ccggatcggt
     1381 gagcgccacg cgcacccggt agcggcccgg cgcgaggtcg ggaaagaagg gcacatacgc
     1441 gtcctgctgc tgttcgtccg ggtggtagat ggccaggcgg ccgtcgcgcc gctcgatgta
     1501 gttgtcatcc agcagatgac cgccgctggc tgccagttcg atgcggtggt tggcggcgta
     1561 caggcggtgg ctgcgccggg tgccgtccgc ggcgatgaac agcaggtgca cttcagcgtg
     1621 ctccagggtc agcggccgtt ccgcgctcag gccaaggctg aacagcggcg aggccgggtc
     1681 ggaaaagtcg ctgacgctca ggctcagccc gtccggatgc ggccccgcgc ggtagcgctt
     1741 acgcaggtcg taggcgcggt ccagggagac ccagcgctcc agcggaccct tgcgcgaggc
     1801 gtagcgaatc tgcaaccact gcccttggtg tgccagcacc tcgcagatat cgccctcgat
     1861 caggtacgcc ttgctgcggc tggcctcgtt gggttcgtgg tgcagataca ggcgggg
//
LOCUS       DATIHC010000057         4172 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_44429, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000057 DATIHC010000000
VERSION     DATIHC010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4172
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44429"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1259)
                     /locus_tag="VLF16_00965"
     CDS             complement(<1..1259)
                     /locus_tag="VLF16_00965"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HSX69472.1"
                     /translation="MSRLLFECTNVFRNPGVNSGIQRVVRNIVRQLEPASGTVECVPV
                     LFAHNRLYRVAQLTPGSEGRTLPAKAYAWLERLNQAIWRLHGLYEGRWPMRRWHNARR
                     VFFVLWRLLGLPLTIALRALRLFGYDPLQQRAEPFEAQPGDQLVLLDSSWHSQHFAQI
                     EGLKRRGVGVIAVIYDLIPVVRPEFFEERLRGVFNMWFDWVVHQADGYMSISQSVSEQ
                     VRDEITQRLGGDAAAERWYGYFHLGSELDLRDEAGAPAAELVGLFESGRQVFLAVSTI
                     EPRKNHAYLLDAFELAWAEGSQACLCIIGRVGWKCEALIKRIREHAEFDRRLFMFNDV
                     DDNGLELAYSKAAALVFSSHAEGFGLPLVEAMQRGLPAMGSDLPVFREIGGEHMAYFG
                     LDRPSDLAELVQRFESSGQFPAAKALSG"
     gene            complement(1256..2518)
                     /locus_tag="VLF16_00970"
     CDS             complement(1256..2518)
                     /locus_tag="VLF16_00970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011336676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSX69473.1"
                     /translation="MGWVRVKGLGKAFKHYPTRWARLAEWLLPWCGPRHELVWALRDV
                     NFEVRPGEAIGLVGTNGAGKSTLLKLITGTSIPTEGDIRFEGRVAALLELGMGFHPDF
                     SGRQNVLMAGQLLGLTLAEIDQLMPEIEAFAEIGAAIDQPIRTYSSGMQMRLAFSIAT
                     ARRPDILIVDEALSVGDAYFQHKSFERIRQFRRHGTTLLIVSHDRYAIQSICDRALLL
                     HGGRLLQEGPPDGVLDYYNALMADREGNSIRQERLASGHTQTISGSGEASIQAVRLLD
                     EQGQASEAFAVGEQAALEVEVLVHQPLARLGLGFLIKDRFGQEIYGINTHRLALSEET
                     LEVGERLVFRFDFPVRLGSGNYSVSLCLSQEDSHLVGNYEWRDYSVVFHVVNRDQENF
                     VGCAWLGATASLQRQSSLPSGIVRERQS"
     gene            complement(2518..3315)
                     /locus_tag="VLF16_00975"
     CDS             complement(2518..3315)
                     /locus_tag="VLF16_00975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012078020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSX69474.1"
                     /translation="MLSLLGRDLWIYRGFILSSVKRDFQSRYRNSLLGALWPLLQPLA
                     MILIYTLIFSQVMRARLAGVDDSLAYGIFICVGILTWGLFAEVLNRSLTMFLDNANLL
                     KKLSFPRLCLPVIVFFSALLNFAITLGMFLVVLALIGRLPGEAIVALPLLLGLQLLLA
                     LGLGLLLGVLNVFFRDVGQLFAIGLQLWFWLTPIVYPLNILPEALQPWLALNPMSGLM
                     QAYQGIFLHDAWPNWPELLPVGLVGVFCWIFALLLYRAKSADMLDEL"
     gene            complement(3315..>4172)
                     /locus_tag="VLF16_00980"
     CDS             complement(3315..>4172)
                     /locus_tag="VLF16_00980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008049151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HSX69475.1"
                     /translation="FLWNSGMFCFSIGSILRELRAHAPELLQLAEECVTASPAHDSAG
                     VLLQELDARSFAELPDISIDYAVMEHSSSVAVVPASFDWSDIGSWGALSQLIPADAQQ
                     NRVQGEAILIETRNTVVLGETRLVATVGLDNLIIVDTADAVLVAHADRAQEVRQVAKR
                     LKAQSHDAYRLHRTVARPWGTYTVLEEGPRFKIKRIVVKPGGSLSLQMHHHRSEHWIV
                     VSGMARVVNGEGELLVNTNESTFIPAGHKHRLENPGVIDLVMIEVQSGEYLGEDDIVR
                     FQDHYGRVR"
BASE COUNT          917 a         1340 c         1239 g          676 t
ORIGIN      
        1 cccgagagcg ccttggcagc tgggaactga ccactcgact cgaagcgctg gacaagctcg
       61 gcaagatcgg acggacgatc caggccgaag taggccatat gctccccgcc gatctcacgg
      121 aacacgggca gatcgctgcc catggccggc aggccgcgct gcatcgcctc gacgagagga
      181 aggccaaagc cttcggcgtg agacgagaac actagggcgg ccgctttcga ataggctagc
      241 tcgagtccgt tgtcatcgac atcgttgaac atgaacaggc ggcgatcaaa ctcggcatgc
      301 tcgcgaatgc gcttgatcag ggcctcgcac ttccagccta cacggccaat gatgcacagg
      361 caggcctggc taccctcggc ccatgccagc tcgaacgcat ccagcagata ggcgtggttc
      421 ttgcgcggct cgatggtgct caccgccagg aaaacctggc gaccggactc gaacagcccg
      481 accagctctg ccgccggcgc gcccgcctcg tcacgcaggt ccagctcgga gcccaggtgg
      541 aaatagccgt accagcgttc ggcggcagca tcgccaccca agcgctgagt gatctcatcg
      601 cgtacctgtt cgctcacact ctgcgagatc gacatatagc cgtcggcctg gtgcaccacc
      661 cagtcgaacc acatgttgaa gacgccgcgc aggcgctcct cgaagaactc tgggcgcacc
      721 accgggatca ggtcgtatat gaccgcaatc acccccaccc cgcggcgctt gagcccctcg
      781 atctgggcaa aatgctggga atgccatgac gagtcgagca ggaccagctg atcgccaggc
      841 tgggcctcga aaggctccgc acgctgctgc aagggatcgt agccgaacag ccgcagcgcc
      901 ctcagggcaa tagtcagggg tagcccgagc agccgccaga gcacgaagaa aacgcgtcgt
      961 gcgttgtgcc agcggcgcat tggccaacgc ccctcgtata gcccgtgcag ccgccagatc
     1021 gcctgattga gacgctcaag ccatgcgtag gctttggctg gcaacgtccg gccctcactg
     1081 cccggtgtga gttgtgccac acggtacagg cgattgtggg caaacagcac ggggacacac
     1141 tcgacagtgc ccgatgccgg ctcgagctgc cggacgatat tgcgcaccac acgctggatg
     1201 ccggaattga ctccgggatt gcggaagacg ttggtgcact cgaataacag acgactcaag
     1261 actgcctctc tcgaacgatt ccgctgggca gggagctctg ccgttgcaag ctggccgtgg
     1321 cgcccagcca ggcgcagcca acgaagtttt cctgatcacg gttaaccaca tggaacacga
     1381 cgctgtagtc gcgccattcg tagttgccca cgagatgcga gtcctcttgt gacaagcata
     1441 gggaaaccga gtagttccca ctcccgaggc gcacagggaa atcgaaacgg aacactaggc
     1501 gctcaccgac ttcgagcgtc tcctcgctca atgccaggcg atgagtgttg atgccgtata
     1561 tctcctgacc gaagcggtcc ttgatcagga aacccaaacc gaggcgcgcc aatggctggt
     1621 ggaccagtac ctccacctcc agcgccgcct gctccccgac cgcgaacgcc tcgctggcct
     1681 gcccctgctc gtcgagcagg cgaaccgcct ggatgctggc ctcaccgctg cccgatatcg
     1741 tctgggtatg acccgatgcc agacgctcct ggcggatcga gttgccttcc cggtctgcca
     1801 tcagggcgtt gtagtagtcc agcacgccat cggggggccc ctcctggagc agccggccac
     1861 catgcagcag cagcgcacga tcgcagatcg actgaatggc atagcggtca tgggaaacga
     1921 tcagcagcgt agtgccgtga cggcggaact gacgaatgcg ctcgaagctc ttgtgctgga
     1981 aataagcatc gcccaccgac agcgcctcgt cgacgatcag gatatcgggg cggcgggccg
     2041 tggcgatgct gaacgccagg cgcatctgca tgccgctgga gtaagtacga atgggctggt
     2101 cgatagcggc gccgatctcg gcgaatgcct cgatctcggg catgagctga tcgatctccg
     2161 ccagcgtcag ccccagcagt tgaccggcca tgagcacgtt ctgccggccg ctgaaatcgg
     2221 ggtggaaacc catacccagt tccagcaggg ctgccacccg cccttcgaaa cgtatgtcgc
     2281 cttcagtggg gatgctggta ccggtgatca gcttgagcag agtgctcttg ccggcgccat
     2341 tggtaccgac caggccaatg gcctcccccg gacggacctc gaagttgaca tcgcgcagcg
     2401 cccacaccag ttcgtgacgc ggcccacacc agggcagcag ccactcggcc aggcgcgccc
     2461 aacgggtcgg atagtgtttg aaggccttgc ccagcccttt tacgcgcacc caacccatca
     2521 gagttcatcc agcatatccg cgctcttggc gcgatatagc agcaaagcga agatccagca
     2581 gaaaacaccc accaggccta ccggcaacaa ctccggccaa ttcggccagg cgtcatgcag
     2641 gaaaatcccc tggtaggcct gcatcaggcc gctcatgggg ttgagcgcca gccagggctg
     2701 caaggcctca ggcaggatgt tcagcggata gacgatgggg gtcagccaga accagagctg
     2761 caggcctatc gcaaagagct ggccgacatc gcgaaagaac acattcagca caccgagcaa
     2821 cagccccagg ccgagcgcca gcagcaactg cagccccaac aacagaggca gcgccactat
     2881 cgcctcaccc ggaagacggc cgattagggc gagcaccacg aggaacatac ccagcgttat
     2941 cgcgaagttc agcagggccg aaaagaacac gatcactggc aggcaaaggc gaggaaagct
     3001 gagtttcttc aagaggttgg cgttgtcgag gaacatcgtc aggctgcgat tgagcacctc
     3061 ggcgaacaaa ccccaggtca ggatgccgac acagatgaag atgccgtagg ccaggctatc
     3121 gtctacccca gcaagccgag cacgcatcac ctgagagaag atcagcgtat agatcaggat
     3181 catcgccagg ggctgcagca acggccacaa ggcaccgagc agagagttgc gataacggct
     3241 ctggaagtcg cgcttgacgc tactgaggat aaagccgcga taaatccaca gatcacggcc
     3301 aagcaaggac agcactagcg caccctgccg tagtgatcct ggaagcgaac aatatcgtct
     3361 tcgccaagat actcgccgct ctgcacctcg atcatcacca gatcgatcac gcccggattc
     3421 tccaagcggt gcttgtgtcc tgccggaatg aatgtggact cattggtatt gaccagcagc
     3481 tcgccctcgc cattaacgac cctggccatg ccgctgacga caatccagtg ctcgctgcgg
     3541 tggtggtgca tctgcaggga aagcgagccg cctggcttga ccacgatgcg cttgatcttg
     3601 aaacgcggcc cttcttccag aaccgtgtag gtaccccagg gacgagcaac cgtgcgatgc
     3661 aggcggtagg catcatggct ctgcgccttg agacgcttgg caacctggcg tacctcctgg
     3721 gcacgatcgg catgggcgac cagcaccgca tccgcggtat cgacaatgat gagattatcc
     3781 aggccgacgg tagccacgag acgagtttcg cccagcacca cggtgttgcg cgtctcgatg
     3841 agaatcgcct cgccctgcac ccggttctgc tgggcatcgg ccggaatcag ttgcgacagg
     3901 gctccccagg agccgatatc gctccaatcg aacgacgcgg gcaccaccgc gacggaactg
     3961 gagtgctcca tcaccgcata gtcgatcgag atatccggaa gctcggcgaa gcttcgagca
     4021 tccagctcct gcaacagcac acccgcactg tcgtgagcgg ggctggcggt cacgcattct
     4081 tcggccagtt gcagaagctc gggggcatgg gcgcgcagct cacgcaggat gctgcctatg
     4141 ctgaagcaga acatcccgga gttccaaagg aa
//
LOCUS       DATIHC010000058         3242 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11816, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000058 DATIHC010000000
VERSION     DATIHC010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3242
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11816"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..635
                     /locus_tag="VLF16_00985"
     CDS             <1..635
                     /locus_tag="VLF16_00985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017519178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HSX69476.1"
                     /translation="FSHDLRSPLSASVMATGLMQRKPERRTEELLGVLQDNLQRIDQM
                     VANLLDISHVSVGGGIRLISEPMDLATLLRDAVANLALQLNNPLELEMDESGAQVVWD
                     RSAFLRILDNLVGNAAKHGKAEAPIRIEQSLEDKAIKLVVTNYGAFPAEVLANLATPY
                     FISSQSDTKGWGLGLPIVKALTESFGGQVSFGNEGEQARVEVLLPLAVGD"
     gene            complement(652..3090)
                     /locus_tag="VLF16_00990"
     CDS             complement(652..3090)
                     /locus_tag="VLF16_00990"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017132477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch/alpha-glucan phosphorylase"
                     /protein_id="HSX69477.1"
                     /translation="MVAENEVAAFKQNILAKLKYAVGKDAGNAFDHDWFEAIALAARD
                     HVIDRWEEASAQMDRRGQKRVYYLSLEFLIGRLLVDNLSNLGLLEVARKALDELGVDL
                     ERIRQVEPDAALGNGGLGRLAACFMESMATLGLAAHGYGIRYEHGLFRQALADGWQLE
                     QTETWLDFGNPWEFERPEVAYNIGFGGAVLSQPDEDGVPHHVWQPLETLRAIAYDTPV
                     IGWRRSAVNTLRLWRARAEEDLQLDRFNAGDHIGAVVDVVRAESISRVLYPADSTEAG
                     QELRLRQEFFFVSASLQDLLQRHMREHGDIHQLPERAAIQLNDTHPAIAVAELMRLLV
                     DEHRLSWYDAWQLTVATLSYTNHTLLPEALESWPVSLMERLLPRHMQIIYLINAYHID
                     ALRAQDIHDFDLLRSVSLIEEDHGRRVRMGNLAFLGAHSINGVSALHTDLMRKTVFRD
                     LHDLYPTRINNKTNGVTFRRWLFQVNPGLTGLLVETLGEEVLDSPETVLRGLESHAGK
                     KTMHKRYAALRQQNKAALAAVVQERLSVILDTSAMFDVQVKRIHEYKRQLLNLIHTVA
                     LYQAIRNEPTTDWVPRVKIFAGKAAASYHQAKLTIKLANDISRTVNDDPTVRGLLKVV
                     FIPNYNVSLAETIIPAADLSEQISTAGLEASGTSNMKFALNGALTIGTLDGANVEMSE
                     LVGRENMFIFGMTAQQVEMRKRSGELNMTSVIAGSERLSTALEAIRSGVFSPDDPARY
                     VGLIDALVYDDRFMVCADFDDYWDTQRRVDELWQDPARWWRAAILNTARMGWFSSDRT
                     IREYAKEIWRALPG"
BASE COUNT          535 a         1069 c         1077 g          561 t
ORIGIN      
        1 cgttcagcca cgacctgcgc tcgccgctgt cggcgtcggt gatggctacc gggctgatgc
       61 agcgcaagcc cgagcgtcgt accgaggaac tgctcggcgt gctgcaggac aacctgcagc
      121 gcatcgacca gatggtcgcc aacctgctgg atatctccca cgtcagtgtg ggcggcggca
      181 tccgcctgat cagcgagccc atggacctgg ccaccctgct gcgcgacgcc gtggccaatc
      241 tcgccctgca gctcaacaat ccgctcgagc tggagatgga cgagtccggc gcgcaggtgg
      301 tctgggaccg ctcggccttc ctgcgcatcc tcgacaacct ggtgggcaac gcggccaagc
      361 acggcaaggc ggaggccccc attcgcatcg agcagagcct ggaagacaag gccatcaagc
      421 tggtggtgac caattacggc gcgttcccgg ccgaggtgct ggccaacctg gccacgccct
      481 acttcatctc cagccagagc gataccaagg gctgggggct gggcctgccg atcgtcaagg
      541 cactgaccga gagcttcggc ggccaggtca gcttcggcaa cgagggcgag caggcacggg
      601 tcgaggtgct gctgcccctg gccgtcggcg actgacgacc ctgcccggca ctcagccggg
      661 caaggcgcgc cagatttcct tggcgtactc gcgaatggtg cggtccgacg agaaccagcc
      721 catgcgcgcg gtgttgagga tcgccgcgcg ccaccagcgg gccggatcct gccacagctc
      781 gtctacccgg cgctgggtgt cccagtagtc gtcgaagtcg gcacagacca tgaagcggtc
      841 gtcgtacacc agcgcatcga tcaagccgac gtagcgcgcc gggtcgtccg gcgagaacac
      901 gccggagcgg atcgcctcga gcgccgtcga caaccgctcg gagccggcga tgaccgaggt
      961 catgttcagc tcgccggaac gcttgcgcat ctccacctgc tgcgccgtca tgccgaagat
     1021 gaacatgttt tcccgcccaa ccagttccga catctccacg ttggcgccgt ccagggtgcc
     1081 aatggtcagc gcgccgttga gggcgaactt catgttgctg gtgcccgagg cctcgaggcc
     1141 ggcggtggat atctgctcgg acagatccgc cgccgggatg atggtctcgg ccaggctgac
     1201 gttgtagttg ggaatgaaca ccaccttgag caggccgcgc accgtggggt cgtcgttgac
     1261 cgtgcggctg atgtcgttgg ccagcttgat ggtcagcttg gcctggtggt agctggccgc
     1321 cgccttgccg gcgaagatct tcacccgcgg cacccagtcg gtggtcggct cgttgcggat
     1381 cgcctggtac agcgccacgg tgtggatcag gttgagcagc tggcgcttgt actcatggat
     1441 gcgcttgacc tgcacgtcga acatcgccga ggtgtcgagg atcacgctca ggcgctcctg
     1501 caccacggcc gccagggccg ccttgttctg ctggcgcagg gcggcatagc gcttgtgcat
     1561 ggtcttcttg ccggcgtggc tttccagccc gcgcagcacg gtctccggcg aatcgagcac
     1621 ctcttcgccg agggtctcga ccagcaaccc ggtcagccct ggattgacct ggaacagcca
     1681 gcggcggaag gtcacgccgt tggtcttgtt gttgatccgg gtcgggtaca ggtcgtgcag
     1741 gtcgcggaac accgtcttgc gcatcagatc cgtgtgcagc gccgatacgc cgttgatgct
     1801 gtgcgctccg aggaacgcca ggttgcccat gcgcacgcgg cggccatggt cttcctcgat
     1861 cagcgatacc gagcgcagca ggtcgaagtc atggatgtcc tgggcccgca gcgcgtctat
     1921 gtgatacgcg ttgatcagat agatgatctg catgtgccgc ggcagcaggc gctccatcaa
     1981 cgacaccggc caggactcga gggcctcggg cagcagcgtg tggttggtgt aggacagcgt
     2041 tgccaccgtc agctgccagg cgtcgtacca gctgagccga tgctcatcga ccagcaggcg
     2101 catcagctcc gccacggcga tcgccgggtg ggtgtcgttg agctggattg ccgcccgctc
     2161 cggcagctgg tgaatgtcgc cgtgctcgcg catgtgacgc tgcaacaggt cctgcagcga
     2221 ggcggaaacg aagaagaact cctggcgcag gcgcagctcc tggcccgcct cggtgctgtc
     2281 ggccgggtac agcacccgcg agatgctctc ggcgcgcacc acgtcgacca ccgcaccgat
     2341 atggtcaccg gcgttgaagc ggtcgagctg cagatcttcc tcggcacggg ccctccacag
     2401 gcgcagggtg ttcaccgccg agcggcgcca gccgatcacc ggcgtgtcat aggcgatggc
     2461 gcgcagggtc tccaggggct gccagacatg gtgcggaacg ccgtcttcgt ccggctggct
     2521 cagcaccgcg ccgccgaagc cgatgttgta ggcgacctcg ggacgctcga attcccacgg
     2581 gttgccgaag tccagccagg tctcggtctg ctctagctgc cagccatcgg ccagcgcctg
     2641 acgaaacagc ccgtgttcgt aacggatgcc gtaaccgtgg gcggccagac cgagggtggc
     2701 catgctctcc atgaagcagg ccgccagccg gccgaggccg ccgttgccga gggccgcatc
     2761 cggctcgacc tggcggatgc gctcgaggtc gacacccagc tcgtcgagag ccttgcgcgc
     2821 cacctcgagc agaccgaggt tgctcaggtt gtccaccagc aggcgaccga tgaggaattc
     2881 cagcgagagg taatagacac gcttttgccc gcgtcggtcc atctgcgccg aagcttcttc
     2941 ccagcggtcg atcacatggt cgcgggccgc cagggcaatg gcctcgaacc agtcgtggtc
     3001 gaaggcattg cccgcgtcct tgcctacggc atatttcagc ttggcgagga tgttctgctt
     3061 gaacgcggca acctcgttct ccgcaaccat ggccacctcc ttcaggcaat gcggcgcagc
     3121 gactcccgag ccgcgtcggc cggctgagtc atcagcggtg ccgggtgggc aatggccgcc
     3181 tcgtcgtcac gcatgctgtc cagcagatcg tggcccggca gcgtcagatt atgagcgatc
     3241 ag
//
LOCUS       DATIHC010000059         3335 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4873, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000059 DATIHC010000000
VERSION     DATIHC010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3335)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3335)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3335
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4873"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..856
                     /locus_tag="VLF16_00995"
     CDS             <1..856
                     /locus_tag="VLF16_00995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017362049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HSX69478.1"
                     /translation="GLPAGLPVVAGAVDNTASALGSGAVADNALHLYVGTSSWIGAHV
                     TQKKTDVFRQIAAVPCALPDRYLMMAMQSAAGANLSFLRDRILYAKDALLQNEAGPDV
                     YRILDEIAAGVPAGARGLLYLPWLMGERTPVDDSHLRAGLLNLSLEHAREDMVRAFLE
                     GVALNTRWMMESVRSFLGTRPDTITLVGGGGQSDVWSQVFADVLDMTVLQPEQPIQAN
                     ARGAAFLAGVGIGALQFSDLAERVAIRRRFEPQAAHRQRYTDSYATFRAAHKALAPFY
                     AKLHGDPR"
     gene            853..1482
                     /locus_tag="VLF16_01000"
     CDS             853..1482
                     /locus_tag="VLF16_01000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HSX69479.1"
                     /translation="MNEREAREAVVRTAVALADQGYLAGVGGNLALRIDAERFAVTPS
                     ASDYYAMTADDICVLRLDNLEQLADGGKPSVESGLHARALQARPDCRASVHTHQPVAS
                     AFTLLDRPLPMHGAEARRLIGAEVPMCAYAPSGTSWLAANVGKRIRADLNAYLMRNHG
                     AVCLGATLEDACAVVRLLEQEAIAWFRRALAAQPDNRLYRQTLEFLADG"
     gene            1629..3089
                     /locus_tag="VLF16_01005"
     CDS             1629..3089
                     /locus_tag="VLF16_01005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSX69480.1"
                     /translation="MNASTDLPSTSGISHWPDTDAIDARLKTLIKQPIRPIRREHMDK
                     VLGYFENNCRTSKQLAEQACAVIPGGVQHNLAFNYPFPLAMNKAEGAHLQDVDGNRYI
                     DFLQAGGPTLLGSNDPVVQQKVIETLRDCGPVTGLLHEYEVKLAELVCRMVPSVEMFR
                     MLSSGTESVMGAIRLARAYTGKKWVIKIGGAYHGWSDQLVYGMRIPGTGRREAIGIPR
                     GATSHTQESFPNDLAAIRRRLQINRLRGGTAAIIVEPLGPESGTRPAHREFNANLRKL
                     CDEFGALLIFDEVVSGFRVGLSGAQGYFNVLPDLTIFGKCLTGGYPMAGGIGGRREVM
                     MLLAGGIGGKQTKRAFVGGTLTANPLSCVAGYHSLLEIERRNAPAVAGRAGDRLTAGL
                     GQIIERLGLPYVVYNQGSVVHLQTSGVLLLNVRNPIQLLREVNPRKHMMEEMGAAYMA
                     HGLVTLAGSRMYTSAADTEGIIDEALNRFEDVFKLV"
     gene            3086..>3335
                     /locus_tag="VLF16_01010"
     CDS             3086..>3335
                     /locus_tag="VLF16_01010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69481.1"
                     /translation="MSLHDELLQASQRLAAKGLFNDGGDSLSLLLPGTGRILLQVYGE
                     APREVELGQSEDGVAGLHARLYRLRGDIGAAALLSPRWS"
BASE COUNT          551 a         1227 c         1082 g          475 t
ORIGIN      
        1 cggcctgccc gccggtctgc cggtagtggc cggcgcggtg gacaacaccg catcggcact
       61 gggctccggg gccgtggcgg acaacgccct gcacctgtac gtcggcacct cgtcgtggat
      121 cggcgcccac gtgacgcaga agaagaccga cgtgttcagg cagatcgccg ccgtgccctg
      181 cgccctgccc gaccgctacc tgatgatggc catgcagtcc gccgccggcg ccaacctcag
      241 cttcctgcgc gaccgcatcc tctacgccaa ggatgccctg ctgcagaacg aggccggccc
      301 ggacgtctac cgcatcctcg acgagatcgc cgccggcgtg ccggccggtg cccgcggcct
      361 gctctacctg ccctggctga tgggcgagcg caccccggtg gacgacagcc acctgcgcgc
      421 cggcctgctc aacctgagcc tggagcacgc ccgcgaagac atggtgcgcg ccttcctcga
      481 gggcgtggcg ctcaacaccc gctggatgat ggaatcggtg cgcagtttcc tcggcacccg
      541 gccggacacc atcaccctgg tcggtggcgg cggccagtcc gatgtgtgga gccaggtctt
      601 cgccgacgtg ctggacatga ccgtgctgca gcccgagcag ccgatccagg ccaatgcccg
      661 cggcgccgcg ttccttgccg gagtcggcat cggcgcactg cagttctccg atctcgccga
      721 gcgggtcgcc atccgccgcc gcttcgagcc gcaggccgcg caccgccagc gctacaccga
      781 cagctacgcc accttccgcg ccgcgcacaa ggcgctggcg cccttctacg ccaagctcca
      841 cggagaccca cgatgaacga gcgcgaagcc cgcgaggcgg tagtgcgcac cgccgtcgcc
      901 ctggccgacc agggctacct ggccggtgtc ggcggcaacc tggcgctgcg catcgatgcc
      961 gagcgtttcg ccgtcacgcc ctcggccagc gactactacg cgatgacggc ggacgatatc
     1021 tgcgtgctgc gcctggacaa cctcgagcag ctcgccgatg gcggcaagcc ctcggtggag
     1081 agcggcctgc acgcccgcgc cctgcaggcg cgaccggact gcagggccag cgtgcacacc
     1141 caccagccgg tggccagcgc cttcaccctg ctcgaccggc cgctgccgat gcacggtgcc
     1201 gaggcgcgcc gactgatcgg cgccgaggtg ccgatgtgcg cctacgcgcc gtccggcacc
     1261 agctggctgg ccgccaatgt cggcaagcgc atccgcgccg acctcaatgc ctacctgatg
     1321 cgcaaccacg gcgccgtctg cctcggcgcg accctggaag acgcctgcgc cgtggtgcgt
     1381 ctgctggaac aggaagccat cgcctggttc cgccgcgccc tggccgcgca accagacaac
     1441 cgcctgtacc gacagacgct cgaattcctg gcagacggtt gaaacgtagg cgaggcaggc
     1501 tggcctaggc aaaagcggcc gaaaaaagcg cagtttacgc gctgtaaatg agcatttttg
     1561 aggccggttt taacgacggc cagaccacgc aggtagtttc aaccgcctgc caaagaagag
     1621 gacctgctat gaacgcctcc accgacctgc ccagcacctc cggcatcagc cactggccgg
     1681 acaccgatgc catcgacgcg cgcctgaaga cgctgatcaa gcagccgatc cgaccgatcc
     1741 gccgcgagca catggacaag gtgctcggct atttcgagaa caactgccgc acgtccaagc
     1801 aactggccga gcaggcttgc gcagtcatcc ccggcggcgt gcagcacaac ctggcgttca
     1861 actatccctt cccgctggcg atgaacaagg cggaaggcgc gcatctgcaa gacgtcgacg
     1921 gcaaccgcta catcgacttc ctccaggccg gcggtccgac cctgctcggc agcaacgatc
     1981 cggtggtaca gcagaaggtg atcgagaccc tgcgcgactg cggcccggtc accggcctgc
     2041 tgcacgagta cgaggtcaaa ctggccgagc tggtgtgccg catggtgccg tcggtggaga
     2101 tgttccgcat gctctcctcc ggcaccgaat cggtgatggg cgccatccgc ctggcccgcg
     2161 cctacaccgg caagaaatgg gtgatcaaga tcggcggcgc ctaccacggc tggagcgacc
     2221 agctggtgta cggcatgcgc attcccggca ccggccggcg cgaggccatc ggcattccgc
     2281 gcggcgccac ctcgcatacc caggagagct tccccaacga cctcgccgcc atccgccggc
     2341 gcctgcagat caaccgcctg cgcggcggca ctgcggcgat catcgtcgag ccgctgggcc
     2401 cggagagcgg cacccgcccg gcgcaccgcg agttcaacgc caacctgcgc aagctgtgcg
     2461 acgagttcgg cgcgctgctg atcttcgacg aagtggtcag cggcttccgc gtcggcctgt
     2521 ccggcgccca gggctacttc aacgtgctgc cggacctgac catcttcggc aagtgcctga
     2581 ccggcggtta ccccatggcc ggcggcatcg gcggccgtcg cgaggtgatg atgctgctgg
     2641 ccggtggcat cggcggcaag cagaccaagc gcgccttcgt cggcggcacc ctgaccgcca
     2701 acccgctgtc ctgcgtggcc ggctaccaca gcctgctgga gatcgagcgg cgcaacgccc
     2761 cagccgtcgc cggccgcgcc ggtgaccgcc tgaccgccgg cctcggccag atcatcgagc
     2821 gcctgggcct gccttacgtg gtctacaacc agggctcggt ggtgcacctg cagacttccg
     2881 gcgtgctgct gctcaacgtg cgcaacccga tccagctgct gcgcgaggtc aacccgcgca
     2941 agcacatgat ggaagagatg ggcgccgcct acatggccca cggcctggtg accctggccg
     3001 gcagccgcat gtacaccagc gccgccgaca cggagggaat cattgacgag gcgctgaacc
     3061 gcttcgaaga cgtgttcaaa ctggtatgag cctgcacgac gagctgctcc aggccagcca
     3121 gcgcctggcc gccaagggcc tgttcaacga cggtggcgac agcctgtcgc tgctgctgcc
     3181 cggcaccggg cgcatcctgc tgcaggtcta cggcgaggcg ccgcgcgagg tcgaactggg
     3241 ccagagcgag gatggcgtgg ccggcctgca tgcgcggctc taccgcctgc gcggcgacat
     3301 cggcgcggcg gcgctgctca gcccgcgctg gagcc
//
LOCUS       DATIHC010000060         2115 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37452, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000060 DATIHC010000000
VERSION     DATIHC010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2115
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37452"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1047
                     /locus_tag="VLF16_01015"
     CDS             <1..1047
                     /locus_tag="VLF16_01015"
                     /inference="COORDINATES: protein motif:HMM:TIGR03914.1"
                     /note="This protein belongs to the uracil DNA glycosylase
                     superfamily, members of which act in excision repair of
                     DNA. However, it belongs more specifically to UdgX branch,
                     whose founding member was found to bind uracil in DNA
                     (where it does not belong), without cleaving it, appears
                     to promote DNA repair by a pathway involving RecA, rather
                     than base excision; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UdgX family uracil-DNA binding protein"
                     /protein_id="HSX69482.1"
                     /translation="EPAHDILEVAAEHFAERLGRETWLIATPDAAALWDGQQMRFLRP
                     CPPELRDLARSAADPGADLWLAYYNSTFNPARLNRDVLESSMPVRFWKHLPEGPLIPQ
                     MMSQARAGQQRLAQAASVSTREGKEVLIASDRAQPKRAPSTSLGECRDCDIWRDATCA
                     VAGEGPRQAPIMLVGEQPGDQEDLAGRPFVGPAGQVLGNALEQARLQREALYLTNAVK
                     HFKWTPRGGPNSRAVTRKHATPKPGEIKACHRWLDEELAQVSPQVVVALGRTALASLL
                     GTFEPQRLRLADFAGAPFRHEDRWVIVAPHPAAVLRAGADGERRFAELVAALAQARQL
                     AARVSGNAAPDLRR"
     gene            complement(1013..>2115)
                     /locus_tag="VLF16_01020"
     CDS             complement(1013..>2115)
                     /locus_tag="VLF16_01020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HSX69483.1"
                     /translation="SDLFITAGVPPSMKVNGKIMPVTKNAMSPEQTRETVHSVMNEQQ
                     RREFAENHECNFAISARGVGRFRVSAFYQRNLAGMVLRRIETNIPTLDDLKLPEVLKK
                     LALTKRGLVLFVGATGTGKSTSLAAMIGYRNKNTSGHIISIEDPIEYIHQHQSCIVTQ
                     REVGIDTESFEVALKNTLRQAPDVILIGEIRTRETMDYGVAFAETGHLCLATLHANNA
                     NQALDRIINFFPPDRHNQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLINTPLAA
                     DLIRKGEVHELKSLMKRSTEMGMQTFDQALYNLYTQGEITYEDALLYADSANDLRLMI
                     KLGSETDGEHLTSMTQGLSLEVSDEDPGRRFR"
BASE COUNT          321 a          694 c          744 g          356 t
ORIGIN      
        1 gagccggccc acgacattct ggaagtcgct gccgaacact ttgccgagcg gctgggccgc
       61 gagacctggc tgatcgccac gccggacgcc gccgcgctct gggacgggca acagatgcgc
      121 tttcttcgcc cctgcccgcc cgagctgcgc gacctggcgc gctccgccgc cgatccgggc
      181 gcagacctct ggctggccta ctacaacagc accttcaacc cggcgcggct caaccgcgac
      241 gtgctggaga gcagcatgcc ggtgcgcttc tggaagcatc tgccggaagg cccgctgatt
      301 ccgcagatga tgagccaggc ccgcgccggc cagcagcgcc tggcgcaggc cgccagcgtg
      361 agcacgcgtg aaggcaagga agtgctgatc gccagcgacc gggcccagcc gaaacgggcg
      421 ccgagcacct cgctgggcga atgccgcgac tgcgacatct ggcgcgacgc cacctgcgcg
      481 gtcgcgggcg aggggccgcg acaggccccg atcatgctgg tcggcgagca gcccggcgat
      541 caggaggacc tggccggtcg tcccttcgtc ggccccgccg ggcaagtcct gggcaatgcc
      601 ctggagcagg cgcggctgca gcgcgaagcg ctgtatctga ccaacgcggt gaagcacttc
      661 aaatggacac cacgcggcgg ccccaacagc cgcgccgtca cccgcaagca cgccacgccg
      721 aaacccggcg agatcaaggc ctgccaccgc tggctcgacg aagagctggc gcaggtttcg
      781 ccgcaggtgg tggtggcgct cggcaggacg gccctggcct cgctgctcgg gaccttcgag
      841 ccgcaacgcc tgcgcctggc cgacttcgcc ggtgcgccgt tccggcatga ggaccgctgg
      901 gtgatcgtgg caccgcaccc ggccgcggtg ttgcgggcgg gcgcggatgg cgaaagacga
      961 ttcgccgagc tggtcgcggc cctcgcgcag gcgcgccagc tggcggcgag ggtcagcgga
     1021 aacgccgccc cggatcttcg tcgctgactt ccaggctcag gccctgggtc atgctggtca
     1081 ggtgctcgcc atcggtctcc gagccgagct tgatcatcag gcgcaggtcg ttggccgagt
     1141 cggcgtagag cagggcgtcc tcgtaggtga tctcgccctg ggtgtagagg ttgtacagcg
     1201 cctgatcgaa ggtctgcatg cccatctcgg tagagcgctt catcaggctc ttgagttcgt
     1261 gcacctcgcc cttgcggatc aggtcggcgg ccagcggggt gttgatcagc acctcgatca
     1321 ccgcgcgtcg gcccttgccg tccggcgtcg gcaccaactg ctgggcgacg atggccttga
     1381 ggttcagcga caggtccatc cacacctggt tgtgccggtc cggcgggaag aagttgatga
     1441 tccggtccag cgcctggttg gcgttgttgg cgtgcagagt ggccaggcac aggtggccgg
     1501 tttcggcgaa ggccacgccg tagtccatgg tctcgcgggt gcggatctcg ccgatcagga
     1561 tcacgtccgg ggcctggcgc agggtgttct tcagcgccac ctcgaaggac tcggtgtcga
     1621 tgccgacctc gcgctgggtg acgatgcagc tctggtgctg gtggatgtat tcgatggggt
     1681 cttcgatgga gatgatgtgg ccgctggtgt tcttgttgcg gtagccgatc atcgccgcca
     1741 gcgaggtgga cttgccggta ccggtggcac cgacgaacag caccaggccg cgcttggtca
     1801 gcgccagctt cttcagtacc tcgggcagct tgaggtcatc gagcgtcgga atgttggtct
     1861 cgatgcgacg cagcaccatg ccggccaggt tgcgctggta gaaggcgctg acgcggaaac
     1921 gccccacgcc gcgggcgctg atggcgaagt tgcactcgtg gttctcggcg aactcgcggc
     1981 gctgctgctc gttcatcacc gagtgcaccg tctcgcgggt ctgctccggc gacatggcat
     2041 tcttggtcac cggcatgatc ttgccgttga ccttcatcga aggaggcacg ccggcggtga
     2101 tgaacaggtc ggaac
//
LOCUS       DATIHC010000061         2674 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35293, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000061 DATIHC010000000
VERSION     DATIHC010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2674
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35293"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..125)
                     /locus_tag="VLF16_01025"
     CDS             complement(<1..125)
                     /locus_tag="VLF16_01025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004423056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4124 domain-containing protein"
                     /protein_id="HSX69484.1"
                     /translation="MLGRSIILCALLLAAGQASALTIYKYVDKHGTVTYSDKAVPG"
     gene            complement(371..1273)
                     /locus_tag="VLF16_01030"
     CDS             complement(371..1273)
                     /locus_tag="VLF16_01030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX69485.1"
                     /translation="MSKVSVLVVDDATFIRDLVKKGLRDHFPGIQIDEAVNGRKAQQM
                     LARQPADLILCDWEMPEMSGLELLTWCREQDTLKTTPFIMVTSRGDKENVVQAIQAGV
                     SDYIGKPFSNDQLVTKVKKALHRAGKLQALAASAPPKMLSTGAFANDSLAALTGGKAE
                     VVKPAAAPKAAAAPAAAPTPAAKPSANSGGRGQGQLRLPAGSMACVIKALSLKEALLV
                     VKRSELLPQVLESAVLDLEQGEAAETARLNGYLHAVAALESKPDSEWLQLTFKFVDKD
                     PQKLDYLSRLIARGTAQKHFVPGA"
     gene            complement(1369..2097)
                     /gene="phoU"
                     /locus_tag="VLF16_01035"
     CDS             complement(1369..2097)
                     /gene="phoU"
                     /locus_tag="VLF16_01035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0051049 - regulation of transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HSX69486.1"
                     /translation="MINKDSLTHHISQQFNAELEEVRSHLLAMGGLVEKQVNDAVTAL
                     IEADSGLAQQVREIDDQINQMETNIDEECMRILARRQPAASDLRLIISISKSVIDLER
                     IGDESSKIAKRAIELCETGEAPRGYVEVRHIGDQVRKMVQESLDAFARFDADLALSVA
                     QYDKTVDREYKTALRELVTYMMEDPRAISRVLSIIWVLRSLERIGDHARNIAELVIYL
                     VRGTDVRHMGLARMQEEVQAGKTE"
     gene            complement(2248..>2674)
                     /locus_tag="VLF16_01040"
     CDS             complement(2248..>2674)
                     /locus_tag="VLF16_01040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSX69487.1"
                     /translation="LFESLGATDMDERVEWALRKAALWNEVKDKLKQSAYGLSGGQQQ
                     RLVIARTVAVQPEVLLLDEPCSALDPISTLKVEELIYELKSKYTIVIVTHNMQQAARV
                     SDYTAFMYMGKLIEFGDTDTLFTNPAKKQTEDYITGRYG"
BASE COUNT          414 a          850 c          902 g          508 t
ORIGIN      
        1 ccgggcacgg ccttgtcgct ataggtcacc gtgccgtgct tgtcgacata cttgtagatg
       61 gtcagcgcac tggcctggcc ggcggccagc agcaatgcgc agagaatgat tgagcgccct
      121 agcatgactt cacggattta tgggttttta ggtatccgga acccgcaaga ctagcagcgc
      181 cgaaacgctg tcgcgagtac cgccgactca ggctgtgcgg caatcggcag ggtatgtcgg
      241 ggaaacgcgg cgatggccga cgaaaggcgc ggtcgcctgt tccgaaccat cgcgctcacc
      301 gcagcctggg ggcgccatgc acacctgccg gtaaccggca ccggactcgg cgcacgcggc
      361 gcaaccgacc tcaggcgccg ggaacgaagt gcttctgcgc ggtgccgcgg gcgatcaggc
      421 gcgacaggta gtcgagcttc tgtgggtcct tgtcgacgaa cttgaaggtc agctgcagcc
      481 attcgctgtc cggcttcgac tccagcgccg ccaccgcatg caggtaaccg ttgaggcgcg
      541 cggtctcggc cgcctcgccc tgctccaggt ccagcaccgc gctctcgagc acctgcggca
      601 gcagttcgct gcgcttgacc accagcagtg cctccttgag gctcagcgcc ttgatcacgc
      661 aggccatgct gccggccggc aggcgcagct ggccctggcc acggccgccg gagttggccg
      721 agggtttggc agccggcgtc ggtgccgcgg cgggtgcggc cgcggccttg ggcgcggcgg
      781 ccggcttgac cacctcggcc ttgccgccgg tgagggcggc cagcgaatcg ttggcgaagg
      841 cgccggtgct gagcatcttc ggcggtgccg aggcggccag cgcctgcagc ttgccggcac
      901 ggtgcagggc cttcttgacc ttggtcacca gctgatcgtt ggaaaagggt tttccaatgt
      961 agtcggagac gccggcctgg atggcctgga ccacgttctc cttgtcgccg cggctggtga
     1021 ccatgatgaa cggcgtggtc ttcagggtgt cctgctcgcg gcaccaggtg agcagctcga
     1081 ggccggacat ttccggcatc tcccagtcgc agaggatcag atcggccggc tggcgggcga
     1141 gcatctgctg ggccttgcgt ccgttcaccg cctcgtcgat ctggatgccg gggaagtggt
     1201 cgcgcaggcc cttcttcacc agatcacgga taaaggtggc gtcgtccacc accagcacac
     1261 tgactttgct catcgaccac tcccgacaac gatgtcgaca agcatagccg tggatgctgg
     1321 cccaaggcca acgctaagcg cccgggggtg tcggcgctgc cgggcggctt attcggtctt
     1381 gccggcctgc acctcttcct gcatgcgcgc caggcccatg tggcgcacgt cggtgccgcg
     1441 caccaggtag atgaccagct cggcgatgtt gcgcgcgtgg tcgccgatgc gctccagcga
     1501 gcgcaggacc cagatgatcg acagcacgcg gctgatggcg cgcgggtctt ccatcatgta
     1561 ggtgaccagc tcgcgcaggg cggtcttgta ctcgcggtcg acggtcttgt cgtactgcgc
     1621 caccgacagg gccagatcgg catcgaagcg ggcgaaggcg tccagcgatt cctgcaccat
     1681 cttgcgcacc tggtcgccga tgtggcgcac ctcgacgtag ccgcgcgggg cctcgccggt
     1741 ctcgcacagc tcgatggcgc gcttggcgat cttcgaggac tcgtcgccga tgcgctcgag
     1801 gtcgatcacc gacttggaga tgctgatgat cagacgcagg tcggaagccg ccggctggcg
     1861 acgggcgagg atgcgcatgc actcctcgtc gatgttggtt tccatctggt tgatctggtc
     1921 gtcgatctcg cgcacctgct gggccaggcc ggagtcggcc tcgatcagcg cggtgaccgc
     1981 gtcgttgacc tgcttctcga ccaggccgcc catcgccagg aggtggctgc gcacttcctc
     2041 cagttcggcg ttgaactgct gagagatgtg atgggtgagg ctgtctttgt tgatcatggt
     2101 cgagcccttg cgaatcttga tggagttctt atcgaagcgt gccggccttt ggaaaatcgt
     2161 gctgagctag gaggcggcgc gcagacagta caacacgtac ggcaagcgcc gccgacaacg
     2221 cgcagcgcga tttgccatag ccggcggtta gccgtagcgg ccggtgatgt agtcttcggt
     2281 ctgcttcttg gccgggttgg tgaacagcgt atcggtgtcg ccgaactcga tcagcttgcc
     2341 catgtacatg aacgcggtgt agtcggagac gcgcgccgcc tgctgcatgt tgtgggtgac
     2401 gatgacgatg gtgtacttgc tcttcagctc gtagatcagc tcttccacct tgagggtgga
     2461 gatcgggtcc agcgccgagc agggttcgtc gagcagcagc acttccggct gcaccgccac
     2521 ggtacgggcg atcaccagac gctgctgctg gccgcccgac aggccgtacg cggactgctt
     2581 gagcttgtcc ttgacctcgt tccacagcgc cgccttgcgc agcgcccatt cgacccgttc
     2641 gtccatgtcg gtggcgccca ggctctcgaa cagg
//
LOCUS       DATIHC010000062         3068 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2490, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000062 DATIHC010000000
VERSION     DATIHC010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3068)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3068)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3068
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2490"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(84..698)
                     /locus_tag="VLF16_01045"
     CDS             complement(84..698)
                     /locus_tag="VLF16_01045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69488.1"
                     /translation="MSSMEHQEVDLGQQQNQDLIWDLDSIARRELAERFIMLFENRLC
                     VYSESTRQLYTNYNLHFPSDYGRKMVVLPNPYAFHDTLHGIDPAAVRKTGLCVLPGVV
                     LGKPGLLLTTQMKEGSPAPKTMAFKPALAQIISNQKKIGDVFLPILMKGDLREFDQKM
                     PYIHLHRLQVQRLTRLSSFERDDIQQTITRKLLMLYRQADSLGC"
     gene            complement(706..2337)
                     /locus_tag="VLF16_01050"
     CDS             complement(706..2337)
                     /locus_tag="VLF16_01050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015094769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSX69489.1"
                     /translation="MSSLRTLPISRRLWLILLSSILMLLALTGLMLQQIHDDLYRAKA
                     LKTRHVVESALGVLKHYQGLEAGGLAREQAQKQAMEVIRGLRYDQDDYYWINDMTPVM
                     VMHPTNPKLEGQNLSGLKDPDGKFLFNEMVAIARKDGSGQVDYRWPKPGSDEPVPKIS
                     YVELFQPWGWILGSGIYVDDVQQEFRDQALRAVGILIVITLLLGALVVLINRSIARPL
                     NEAVGAMANIASGEADLTRSLDNHGRDELTALGGHFNAFTGKLRGVIGQSLQTSGSLD
                     QAARDLGQIAGDAHTHSQQQSQQMELVATAINEVSYAVQDVAKNAEHAASEVRQAEQQ
                     AQQGQHNIDSSLRQIDHLSETIGQAVQVIENLAQESTQIGSVLEVIRSIAEQTNLLAL
                     NATIEAARAGEAGRGFAVVADEVRALASRTQQSTQEIQGMIDRLQGNSEAAVKVINAS
                     SQASRQTVDLARQAGESLAHIAAALRNLTGLNASIASATLQQSHVVDDINHNVTQAAT
                     LAHENALAADRSSEASQRLGQLAGQLNGLLGQFRV"
     gene            2528..>3068
                     /locus_tag="VLF16_01055"
     CDS             2528..>3068
                     /locus_tag="VLF16_01055"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HSX69490.1"
                     /translation="MDLWTALQVLILGIVEGLTEFLPISSTGHQIIVADLLGFGGERA
                     MAFNIIIQLGAILAVMWEYRRKILITVFNVPRQRQAQRFTANLLIAFLPAVVIGVAFA
                     DLIHDYLFNAVTVAAALVIGGVVMLWAERRTHEVTVEEVDDMTWKEALKIGFAQCLAM
                     IPGTSRSASTIIGGLLFGLS"
BASE COUNT          456 a          961 c         1046 g          605 t
ORIGIN      
        1 ccgcgtggcc tgcgacccag acagttggcg tccacagtgg cgtgaatatc gggttattga
       61 cgccaacaat cggtattcgc ggatcagcag cccagcgaat cggcctggcg atagagcatc
      121 agcagtttgc gcgtgatggt ctgctggatg tcgtcgcgct cgaacgagga gaggcgggtg
      181 aggcgctgca cctgcaggcg atgcaggtgg atatagggca tcttctggtc gaactcgcgc
      241 aggtcgccct tcatcaggat cggcaggaac acgtcgccga tcttcttctg gttgctgatg
      301 atctgcgcca gcgccggctt gaaggccatg gtcttgggcg ccgggctgcc ctccttcatc
      361 tgcgtggtga gcagcagccc cggcttgccc agcacgaccc cgggcagcac gcacagaccg
      421 gtcttgcgca ccgccgccgg atcgatgccg tgcagggtgt cgtggaaggc gtagggattg
      481 ggcagcacca ccatcttgcg cccgtaatcg ctgggaaagt gcaggttgta gttggtgtac
      541 agctggcggg tggactccga gtacacgcac aggcggttct cgaacagcat gatgaagcgc
      601 tcggccagct cgcgtcgggc gatgctgtcc aggtcccaga tcaggtcctg gttctgttgc
      661 tggccgagat cgacctcctg gtgctccata ctgctcatcg acacctcata cccggaattg
      721 ccccaatagc ccgttgagct gccccgccaa ctggccgagg cgctggctgg cctcgctgga
      781 gcgatccgcc gccagggcgt tctcgtgggc cagcgtggcc gcctgggtga cattgtggtt
      841 gatatcgtcg accacgtgcg actgctgcag cgtggcactg gcgatggagg cgttcaaacc
      901 cgtcaggttg cgcagggcgg cggcgatgtg ggcgagactc tcgccggcct ggcgggccag
      961 gtcgacggtc tgccgggacg cctggctgct ggcgttgatc accttgaccg cggcctccga
     1021 gttgccctgc aggcggtcga tcatgccctg gatttcctgg gtgctctgct gggtgcggct
     1081 ggccagtgcg cgcacctcgt ccgccaccac ggcaaagccg cgacccgcct cgccggcgcg
     1141 ggcggcctcg atggtggcgt tgagcgccag caggttggtc tgctcggcga tggagcggat
     1201 cacctccagc acgctgccga tctgggtgct ctcctgggcc aggttctcga tcacctgcac
     1261 cgcctggccg atggtctcgg acagatgatc gatctggcgc aggctgctgt cgatgttgtg
     1321 ctgcccctgc tgggcctgct gctcggcctg gcggacttca ctggcggcgt gctcggcgtt
     1381 cttcgccaca tcctgcacgg cgtaggacac ctcgttgatg gcggtggcca ccagttccat
     1441 ctgctgcgac tgctgctggc tgtgggtatg ggcgtcgccg gcgatctggc ccaggtcgcg
     1501 cgcggcctga tccaggctgc cggaggtctg cagcgactgg ccgatgaccc cgcgcagctt
     1561 gccggtgaag gcattgaagt ggccgcccag ggcggtcagc tcgtcgcggc cgtggttgtc
     1621 caggctgcgg gtcaggtcgg cttcgccgct ggcgatgttg gccatggcgc cgaccgcctc
     1681 gttcagtggc cgggcgatgc tgcggttgat cagcaccacc agggcgccca gcagcagggt
     1741 gatgacgatc aggatgccga cggcgcgcag ggcctggtcg cgaaattcct gctgtacatc
     1801 gtcgacatag atgcccgagc cgagtatcca gccccagggc tggaacagct cgacgtagga
     1861 gattttcggc accggctcgt cggagcccgg cttgggccag cggtagtcga cctggccaga
     1921 gccgtccttg cgggcgatgg ccaccatctc attgaacagg aatttaccgt ccgggtcctt
     1981 cagcccggag aggttctggc cctccagctt gggattggtc gggtgcatga ccatcaccgg
     2041 ggtcatgtcg ttgatccagt agtagtcgtc ctggtcgtag cgcaggccgc ggatcacctc
     2101 catggcctgc ttctgcgctt gctcgcgggc caggccgccg gcctccaggc cctggtagtg
     2161 cttgagcacg ccgagcgcgc tctccaccac gtggcgagtc ttgagggctt tggcccgata
     2221 gagatcgtca tggatctgct gcagcatcag cccggtcagg gccaggagca tgaggatgga
     2281 cgacagcagg atcagccaca gacgccggct gatggggagg gtgcgcaggc tgctcatgta
     2341 cggtgctccg gtttttgttc ttggaatgcg tgctagctaa tcgtcagtct agaagctgcg
     2401 ccattaaccg ttggccaggc agcgcggcgg ggcgccatct ggtagcatgc ccgccgcttc
     2461 tgcctgtgtg ccaggcgcca acctagttat cggccgtttc gcggaaaggg ccagcccgag
     2521 gtcattcatg gatttgtgga cagccctgca ggtactgatt cttggcatcg tggaggggct
     2581 gaccgagttc ctgccgatct ccagtaccgg ccaccagatc atcgtcgccg acctgctcgg
     2641 tttcggcggc gagcgggcga tggccttcaa catcatcatc cagctgggcg ccatcctggc
     2701 ggtgatgtgg gaataccggc gcaagatcct catcaccgtg ttcaacgtgc cgcgtcagcg
     2761 ccaggcgcag cgcttcaccg ccaacctgct gatcgccttc ctgccggcgg tggtcatcgg
     2821 cgtcgccttc gccgacctga tccacgacta cctgttcaac gccgtcaccg tggcggcggc
     2881 tctggtgatc ggcggcgtgg tgatgctctg ggccgagcgg cgcacccacg aggtgacggt
     2941 cgaggaagtg gacgatatga cctggaagga ggcgctgaag atcggcttcg cccagtgcct
     3001 ggcgatgatt cccggcacct cgcgctcggc ttccaccatc atcggcgggc tgctgttcgg
     3061 cctgtcgc
//
LOCUS       DATIHC010000063         6277 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28172, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000063 DATIHC010000000
VERSION     DATIHC010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6277)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6277)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6277
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28172"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>6277)
                     /locus_tag="VLF16_01060"
     CDS             complement(<1..>6277)
                     /locus_tag="VLF16_01060"
                     /inference="COORDINATES: protein motif:HMM:NF003417.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HSX69491.1"
                     /translation="QPLFQVAFNYRRQHPLAANWLPGIETQLAELPSSQIPFDLALDA
                     VRDRGDELLINFAYAADLFAESSIERLIAGMLEVLDGFASHPQAALAEVALVTAPELA
                     QLNEWNTPRQGFDAARLLPELIAEQARLRPEAIALVHGGERIAFAELEARANRLANLL
                     VAHGVQPESRVGVSLQRGNAMIVAMLAVLKSGGAFVPLDPDYPRERLSYMVEDSGLKW
                     LITSSDLAERLPLGEGVERLYLDQLALEDFESSAPAVKLHSLNLAYLIYTSGSTGQPK
                     GVAVNHLGLTMHVQTIGQRYGMTPDDVELHFASISFDGALERWTVPLAFGSRLVIRDQ
                     ELWSAEKTCQVIADEGVTISCLPPSYAQQLLDWVESQGLKLPVRSWTLGGEAFTRETY
                     ERLQKVLQPQRIINGYGPTETVVTPLIWEAFPGDSFEAAYAPIGNPVGPRSLYVLDAE
                     LNLLPIGVAGELYIGGEVGLARGYFQRPELTAERFLPDPFGAAGERMYRTGDLVRWRE
                     DGTLDYLGRVDHQVKIRGFRIELGEIESQLLALGGVQEAAVIARETPTGKQLVGYVVA
                     RDNTDTNALRSELAKVLPDYMVPAQIIALEKLPLTPAGKLDRAALPEPTWQSQSYEAP
                     QTGNERILAAIWAEVLGVERVGRQDHFFELGGDSIVALQVVSRARQQGLGLTPKDLFQ
                     QQTLTQLAGVARSVAAPLADQGPVTGAAPLLPIQARLLQREGLAPCNQYLLLELAEPL
                     PTAQLEKALQALVQHHDALRLRFEQHAGLWQQVHASETGSPLLQQVELAAGENPQPHY
                     DAAQRSIDPASGAHLRGLYLTQPGQADRLLLSIHHLVVDGVSWRVLLEDLQRACLQLA
                     SGLAIQLPSKTSAFKTWGERLAGWNVDAQLPYWQAQQAAGGELPLLSSDAGSEGTRQR
                     LELSLDAGFTRDLLQAGQQAYRLRADELLLTALSRVLCSWNEQPTLTVHLESHGRAPL
                     FDDIDLSRSVGWFTSLYPVRLQPETELVASLKAIKEQLRAVPDLGLGYGLLCQREQLS
                     ARSPQLLFNYLGQFDEGGNGLRLREGGLWREADAPLDAALVINAEQRGGALHLHLDFN
                     PQQLARPTLEGLLTRLQDELRGIAQHCQKIPPSLTPSDVPLAGLSQAELDALPGVEDI
                     HPLSPLQQGLLFHSQLEGAGSYVSQLLLPFTGLAPARLQSAWRQVLARHGVLRSRFLL
                     GERPLQLVQAEVELDWQDLDWRGVADFDAQLQAFCSAERERGFALDQAPLLRLALIQR
                     GTGDFVLAWTLHHLLLDGWSNGLLFAEVLALYHGDRLPAPSSQFRDYIGWLDGQNAEA
                     EQTFWREQLAPLDGATRIAGCLPCRAPEQGHARHPLPLDAATEQQIRGFAQRHGLTLN
                     TLVQAAWALLLARLTGKRSLCFGATVAGRPTELTGSEQMLGLFINSLPVAIQLPAEQP
                     LGDWLAALQVQNLQLREHEHSPLHDIQRWVGSAGEALFDSLLVFENYPLGDALKQAER
                     GELRLGLPQSHEFTHYPMTLAVLPGNRLELLLAYDRAHFDANGIAQVEALLRQALALV
                     CSDATRPLGSLALLGEAEQLLLDEWNKPRQAFDAARLLPQQIAEQARLRPDAIALVHG
                     GERISFSELEARANQLANLLVAHGVCPESRVGVSLERGNAMIVAMLGVLKAGGAFVPL
                     DPDYPRERLSYMVEESGLKWLITSSDLAERLPPGEGVEPLYLDKLDLSTFEASTPAVQ
                     LHPLNLAYLIYTSGSTGQPKGVAVNHFGLTMHVQTIGQRYGMTPEDVELHFASISFDG
                     ALERWTVPLAFGSRLVIRDQELWSAEKTCQVIADEGVTISCLPPSYAQQLLDWVESQG
                     LKLPVRSWTLGGEAFTRETYERLQKVLQPQRIINGYGPTETVVTPLIWEAFPGDGFEA
                     AYAPIGNPVGPRSLYVLDAELNLLPIGVAGELYIGGEVGLARGYFQRPELTAERFLPD
                     PFGAAGERMYRTGDLVRWRADGTLDYLGRVDHQVKIRGFRIELGEIESQLLALEGVQE
                     AAVIARETPTGKQLVGYVVAKDSIDANVLRAELAKVLPDYMVPAQIIALEKLPLTPAG
                     KLDRAALPEPTWQSQSY"
BASE COUNT         1054 a         2037 c         2143 g         1043 t
ORIGIN      
        1 tcgtaggact ggctctgcca agtcggttcc ggcagcgcgg cgcgatccag cttgccggcc
       61 ggggtcagcg gcagtttttc cagggcgatg atctgcgcgg ggaccatata gtccggcaat
      121 accttggcca gctctgcgcg caggacattg gcgtcgatgc tgtctttggc cacgacatag
      181 cccaccagct gcttgccagt cggcgtctcg cgggcaatca ctgccgcttc ctgcacgcct
      241 tccagcgcca gcaactggct ctcgatctcg cccagttcga tacggaagcc gcggatcttc
      301 acctggtggt cgacccggcc caggtaatcc agggtgccgt ctgcacgcca gcgcaccagg
      361 tcgccggtgc ggtacatacg ctcgccggcc gcgccaaagg gatcgggcag gaagcgctcg
      421 gccgtcagct cgggacgctg aaagtagccg cgggccaggc cgacttcgcc accgatatac
      481 agctcgccgg ccacgccgat gggcagcagg ttcagttcgg catccagcac gtacaggctg
      541 cgtgggccaa ccggattgcc gattggggca taggccgctt cgaaaccgtc accagggaag
      601 gcttcccaga tcagcggggt taccacggtc tcggtcgggc cgtagccgtt gattatccgt
      661 tgcggctgca acaccttctg cagtcgttca taagtctcgc gggtaaaggc ctcgccgccc
      721 agggtccagg aacgtaccgg cagcttcagc ccctgcgact cgacccagtc cagcagttgt
      781 tgggcatagc tgggcggcag gcaggagatg gtcacgcctt catcggcgat cacctggcag
      841 gtcttctcgg cgctccacag ttcctgatca cgaatcacca ggcggctgcc gaaggccagc
      901 ggcactgtcc agcgctccag ggcgccgtcg aagctgatgg aggcgaagtg cagttccaca
      961 tcctccgggg tcatgccgta gcgctggccg atggtctgca catgcatggt caggccgaag
     1021 tgattcaccg ccacgccctt gggctgaccg gtggagccgg aggtgtagat caggtaggcc
     1081 agattgagcg gatgcagctg caccgctggc gtcgaagcct cgaaggtaga caggtccagc
     1141 ttgtccagat agagcggctc gacaccctcg cccggcggca gacgctcggc cagatcggag
     1201 ctggtgatca gccacttcag ccccgattcc tcgaccatgt aggacagacg ctcgcgcgga
     1261 tagtccgggt ccagcggcac aaaggcgcca ccggccttca gcacgccgag catggcgacg
     1321 atcatcgcgt tgccgcgttc aagcgagacg ccgacgcggg actccgggca tacgccatgg
     1381 gctaccagca gattggccag ttggttcgcg cgggcctcca gttcggagaa cgaaatacgc
     1441 tcgccaccat gcaccagtgc gatggcatcc ggacgcaggc gtgcctgctc ggcgatctgc
     1501 tgcggcaaca ggcgcgctgc atcaaaggcc tgacgcggct tgttccactc gtccagcagg
     1561 agctgctcgg cctcgcccag caacgccaga ctgcccagcg gccgggtcgc atcactgcat
     1621 accagcgcca gtgcctggcg cagcagcgcc tcgacctggg cgatgccgtt ggcatcgaaa
     1681 tgcgcgcggt cgtaggccag cagcagctcc aggcggttgc ccggcagcac ggccagggtc
     1741 atcgggtaat gggtgaactc gtggctctgc gggagcccta agcgcagttc gccgcgctcg
     1801 gcctgcttga gtgcgtcgcc cagcgggtag ttctcgaaca ccagcaggct gtcgaacagt
     1861 gcctcgccgg cactgccgac ccagcgctgg atatcgtgca gcgggctgtg ctcgtgctcg
     1921 cgcagctgca ggttctgcac ctgcagcgcg gccagccagt cgcccagcgg ctgttcggcg
     1981 ggcaactgga ttgccaccgg caggctgttg ataaacaggc cgagcatctg ctcgctgccg
     2041 gtcagctcgg tcgggcgacc ggccacggtg gcgccgaagc acaggctgcg cttgccggtc
     2101 aggcgcgcca gcagcaaggc ccaggcggcc tgtaccaggg tgttgagggt cagaccatgg
     2161 cgctgggcga agccccgaat ctgttgctcg gtggcggcgt ccagcggcag cggatggcgg
     2221 gcatggccct gctccggcgc gcggcacggc aggcagccgg cgatgcgggt ggcgccgtcc
     2281 agcggggcca gttgttcgcg ccagaaagtc tgttcggctt cggcattctg gccatcgagc
     2341 cagccgatgt agtcgcggaa ctggctgctc ggcgccggca ggcggtcgcc gtggtacagg
     2401 gccagcactt cggcgaacag caggccgttg ctccagccgt ccagcagcag gtggtgcagg
     2461 gtccaggcca gcacgaagtc gccagtgccg cgctggatca gggccaggcg cagcagcggc
     2521 gcctggtcga gggcaaagcc gcgctcgcgc tcggcgctgc agaaggcctg cagctgcgcg
     2581 tcgaaatcag cgacgccgcg ccagtcgagg tcctgccagt ccagctcgac ttcggcctgc
     2641 accagttgca gcgggcgttc gcccagcagg aagcggctgc gcagcacgcc atgacgcgcc
     2701 agcacctggc gccaggcgct ctgcagacga gccggggcga gaccggtgaa cggcagcagc
     2761 aactggctga cgtagctgcc ggcgccttcc agctggctgt ggaacagcag gccctgctgc
     2821 agcggcgaca gcgggtggat atcttccacg ccgggcagcg catccagctc ggcctggctc
     2881 aggccggcca acggtacatc gctgggagtc aggctgggcg ggattttctg gcagtgctgg
     2941 gcgatgccgc gcagctcgtc ctgcaggcgg gtgagcagac cctccagggt cggccgtgcc
     3001 agctgctgcg ggttgaagtc caggtgcaga tgcagggcgc cgccacgttg ctcggcgttg
     3061 atcaccagcg ctgcgtccag cggcgcatcg gcttcacgcc acaggccgcc ttcgcgcagg
     3121 cgcaggccat tgccgccctc gtcgaactgg ccgaggtagt tgaacagcag ttgcggcgag
     3181 cgcgcactca gttgttcgcg ctggcacagc aggccgtagc cgagacccag atcgggcacg
     3241 gcgcgcagtt gttccttgat cgccttgagg ctggcgacca gctcggtttc gggttgcagg
     3301 cgcacggggt agaggctggt gaaccagccg acgctgcgcg acaggtcgat atcgtcgaac
     3361 agcggcgcgc gaccgtggct ctccagatgt acggtcagcg ttggctgctc gttccagctg
     3421 cacagcacgc ggctgagggc agtcagcagc agctcatcgg cacgcaggcg ataggcctgc
     3481 tggccggcct gcagcagatc gcgggtaaag ccggcatcca ggctcagttc caggcgctgg
     3541 cgagtgcctt cgctaccagc atcgctgctc agcagcggca gctcgccacc ggcggcctgc
     3601 tgggcctgcc agtacggcag ttgcgcgtcg acgttccagc cggccaagcg ctcgccccag
     3661 gtcttgaagg cgctggtctt gctcggcagc tgtatcgcca ggccgctggc caattgcagg
     3721 caggcgcgct gcaggtcttc cagcagcaca cgccaggaca caccatcgac taccaggtgg
     3781 tgaatagaca gcagcaggcg gtcggcctgg cccggctggg tcaggtagag cccgcgcagg
     3841 tgcgcgccgc tggctggatc gatgctgcgc tgggctgcgt cgtagtgcgg ctgcgggttt
     3901 tcgccggcgg ccagctcgac ctgttgcagc agtgggctgc cggtttcgct ggcatgcact
     3961 tgctgccata ggccggcgtg ctgttcaaaa cgaaggcgca gggcatcgtg gtgctgaacc
     4021 agggcttgca gggctttttc cagctgggca gttggcaacg gctcggccag ttccagcagc
     4081 aggtattggt tgcacggggc caggccctcg cgctgcagca ggcgcgcctg gatcggcagc
     4141 agcggtgccg cgccagtcac cggaccttga tcggccagcg gtgcggcgac gctacgggcg
     4201 acgccggcca gctgggtcag ggtctgctgc tggaacaggt ccttgggcgt caggcccagg
     4261 ccctgctggc gggcgcggct gacgacctgc agtgcgacga tggagtcacc gcccagttcg
     4321 aagaagtgat cctggcgccc tactcgctcc acacccagta cttcagccca gatggcggcg
     4381 aggatgcgct cgttgccggt ctgcggggct tcgtagctct ggctctgcca ggtcggctcc
     4441 ggcagtgcgg cgcggtccag cttgccggct ggagtcagcg gcagtttttc caacgcaatg
     4501 atctgcgcgg gcaccatata gtccggcagc actttggcca gctcgctgcg caaggcattg
     4561 gtatcagtgt tgtcgcgagc gacaacataa cccaccagct gcttgccggt tggcgtctcg
     4621 cgggcgatta ccgccgcttc ctgcacgcca cccagggcca gcagctggct ctcgatttcg
     4681 cccagttcga tacggaagcc gcggatcttc acctgatggt cgacgcgacc gaggtagtcc
     4741 agggtgccat cttcgcgcca gcgcaccagg tcgccggtgc ggtacatgcg ctcgccggct
     4801 gcgccgaagg gatcgggcag gaagcgctcg gcagtcagct ccggacgctg gaagtagccg
     4861 cgggccaggc cgacttcgcc accgatatac agctcaccgg ctacgccgat gggcagcagg
     4921 ttcagctcgg catccagcac atacaggcta cgcgggccga ccgggttgcc gatgggggcg
     4981 taggccgctt cgaagctgtc accggggaat gcttcccaga tcagcggggt caccacggtt
     5041 tcggtcgggc cgtagccgtt gatgatgcgt tgtggctgaa ggactttctg caggcgctcg
     5101 taggtctcgc gggtaaaggc ttcgccaccc agggtccagg aacgtactgg cagtttcagg
     5161 ccctgcgatt ccacccagtc cagcaactgc tgggcatagc tcggtggcag acaggagatg
     5221 gtcacgcctt cgtcggcgat cacctggcag gtcttctcgg cgctccacag ttcctggtcg
     5281 cgaatgacca ggcggctgcc aaaggccagc ggcacggtcc agcgttccag ggcgccatcg
     5341 aagctgatgg aggcgaagtg cagttccaca tcatccggcg tcatgccgta gcgctggccg
     5401 atggtctgca catgcatcgt caggccgaga tgattgaccg ccacgccctt gggctggccg
     5461 gtggaaccgg aggtatagat caggtaggcc agattgagcg aatgcagctt tactgcaggc
     5521 gccgaggatt cgaaatcttc aagagccaac tgatccagat acagccgctc gacgccctcg
     5581 cccagcggca ggcgctcggc cagatcggac gaagtgatca gccacttcag ccccgagtcc
     5641 tcgaccatgt aagacaaacg ctcgcgcggg tagtccgggt ccagcggcac aaaggcaccg
     5701 ccggatttca gcaccgccag catggccacg atcatcgcgt tgccgcgctg cagagagacg
     5761 ccgacacggg actccggttg tacgccatgg gccaccagca aattggccag gcgattggcg
     5821 cgagcttcca gttcggcaaa ggcaatccgt tcgccgccat gcaccagagc aatggcctcg
     5881 gggcgcaggc gcgcctgctc ggcgatcagc tcgggcaaca aacgcgccgc atcgaagccc
     5941 tgacgtggcg tattccactc attcagctgg gccagctcag gcgcggtcac cagcgccact
     6001 tcggccagcg ctgcctgggg gtggctggcg aaaccgtcga gcacttcgag catgccggcg
     6061 atcagccgtt cgatgctgct ctcggcgaac agatcggcgg cataggcgaa gttgatcagc
     6121 agttcgtcgc cacggtcgcg cacagcgtcc agggccaggt caaagggaat ctggctagat
     6181 ggcagctcag ccagttgggt ctcgatgccc ggcagccagt tggccgcaag tgggtgctgg
     6241 cggcggtagt tgaaggccac ctggaacagt ggctgct
//
LOCUS       DATIHC010000064         4464 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18836, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000064 DATIHC010000000
VERSION     DATIHC010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4464)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4464)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4464
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18836"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1251)
                     /locus_tag="VLF16_01065"
     CDS             complement(<1..1251)
                     /locus_tag="VLF16_01065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSX69492.1"
                     /translation="MAFTDPFIRRPVLATVVSLLIILLGFQAFSKLVIRQYPQMENAL
                     ITVTTAYPGANAETIQGYITQPLQQSLASAEGIDYMTSASQQNLSIISIYARIGADTD
                     RLFTELLAKANEVKNQLPQDAEDPVLSKEAADASALMYVSFYSDELSNPQITDYLSRV
                     IQPKLATLPGMAEAEILGNQVFAMRLWLDPVKMAAYGITAVDVTNAVQRYNFLAAAGE
                     VKGEYVVTSINATTDLKSAEAFGAVPVKTDGDSRVLVRDIARVEMGAENYDSISSFDG
                     IPSVYIAIKGTPSANPLDVIKHVREALPEIESQLPPNLKVSIAYDATEFIRASIEEVV
                     KTLGEAVLIVIVVVFLFLGAFRSVLIPVITIPLSMIGVLFFMQLMGYSINLLTLLAMV
                     LAIGLVVDDAIVMLENIFRHIEEGL"
     gene            complement(1274..2422)
                     /locus_tag="VLF16_01070"
     CDS             complement(1274..2422)
                     /locus_tag="VLF16_01070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017938642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSX69493.1"
                     /translation="MLLRRMLIMLGVVLAVVLALAAYKGFSIYQQIQMFSAPQPAVSV
                     SAAVAEKKPWQSRLPAIGTLKAYQGVDLTAEVQGTVKDVLFQSGEKVTLGQPLLQLDS
                     EVERAILTTAEAVRALARVEYQRGQNLIKRQAISKSEFDRLNAEVLKAEASVTQLKAE
                     LDKKRILAPFAGTIGIRQVDTGDYLSPGTSFATLQDLSRLYVDFFLPEQDYPQLAIGQ
                     RVRISVAAYPGEVFEGEINALNPKVEETTRNVQVRAMLPNPDSKLLPGMFANLEVLLP
                     GEQSQVVVPETAITYTLYGNSVYVIGEKKDDKGEVVKDDKGQAQLVVERRFVETGERR
                     AGQVLILKGLEAGERVVTSGQLKLDNGAHVAIVDDPSLTQDKQASAGQ"
     gene            complement(2612..4237)
                     /locus_tag="VLF16_01075"
     CDS             complement(2612..4237)
                     /locus_tag="VLF16_01075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009045185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098561 - methyl accepting chemotaxis
                     protein complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSX69494.1"
                     /translation="MPLQKSLRAQILALLGGSLALILVTALACFSFLSSGMQAYRGLL
                     DGPLHAARLIDSANVEFKIQVQEWKNVLLRGRDSGDLAKYWGQFEAQERKVQDTLGEL
                     AELAGDDPALRTQVERLRSEHQTLGVNYRKGREAFLAAGGDAQAGDAAVQGIDRAASE
                     QMSALVDQLRERSLQQAGLINAGAERTILLGTLVMLGASVVIALFSLWLVNRHLIIPI
                     RHLITHVDQLSHGNFGQRVETSRRDELGMLAIASNTLRDFLASTTESLRLSSGNLDTA
                     SGELNQIASRMTLGINEQFERTDQVATAMHEMSATAQEVARHAAEAAHAADDADSSAR
                     QGGRVMESTIQTITGMRGEIASTAEVIRRLEADSARIGKVLEVIRGIAEQTNLLALNA
                     AIEAARAGEQGRGFAVVADEVRTLAQRTAESTAEIHQIIDTVQTGALNAVRAIESGQS
                     RSEEGVTQVTEAGAMLERITGAVEAIRDMNRQIATAAEEQTSVAEDISRNLTEITAIA
                     SSNQENVERTQAASQALHGLSGELSQVTRRLSA"
BASE COUNT          648 a         1388 c         1615 g          813 t
ORIGIN      
        1 cagcccctct tcgatgtgcc ggaagatgtt ctccagcatc acgatggcgt cgtccaccac
       61 caggccgatg gccaggacca tcgccagcag cgtcagcagg ttgatcgagt agcccatcag
      121 ctgcatgaag aacagcacgc cgatcatcga cagtgggatg gtgatcaccg ggatcagcac
      181 cgaacggaac gcgccgagga acaggaagac caccacgatg acgatcagca ccgcctcgcc
      241 cagggtcttc accacctcct cgatggaggc gcggatgaac tcggtggcgt cgtaggcgat
      301 ggacaccttg aggttcggcg gcagctggga ctcgatctcc ggcagcgcct cgcgcacgtg
      361 cttgatcacg tccagcgggt tggcgctggg cgtgcccttg atggcgatat agacggaggg
      421 aatgccgtcg aacgagctga tcgagtcgta gttctccgcg cccatctcca cgcgggcgat
      481 gtcgcgcacc agcacgcggc tgtcgccgtc ggtcttcacc ggaacggcgc cgaaggcctc
      541 ggccgacttg aggtcggtgg tggcgttgat gctggtgacc acgtactcgc ccttcacctc
      601 gccggcggcg gccaggaagt tgtagcgctg cacggcgttg gtcacgtcca cggcggtgat
      661 gccgtaggcg gccatcttca ccgggtccag ccacaggcgc atggcgaaca cctggttgcc
      721 gaggatctcg gcctcggcca tgccgggcag ggtggccagc ttgggctgga tgacgcgcga
      781 caggtagtcg gtgatctgcg ggttggacag ctcgtcgctg tagaagctga cgtacatcag
      841 cgccgacgcg tcggccgcct ccttggacag cactgggtct tcggcatcct gaggcagctg
      901 gttcttcacc tcgttggcct tggccagcag ctcggtgaac aggcggtcgg tgtcggcgcc
      961 gatgcgcgcg tagatcgaga tgatcgacag gttctgctgg ctcgccgagg tcatgtagtc
     1021 gatgccttcg gcgctggcca ggctctgctg cagcggctgg gtgatgtagc cctggatggt
     1081 ctcggcgttg gcgccgggat aggcggtggt caccgtgatc agcgcgtttt ccatctgcgg
     1141 gtactggcgg atcaccagtt tgctgaaggc ctggaagccc agcaggatga tcagcaggct
     1201 gaccacggtc gcgaggaccg ggcgccggat gaacggatct gtgaaagcca tagcggattc
     1261 cttggcgtcg ggcttactgc ccggcgctgg cttgtttgtc ctgggtcagc gacggatcgt
     1321 cgacgatggc cacgtgggcg ccgttgtcga gcttgagctg gccggaggtg accacgcgct
     1381 cgccggcctc gaggcccttg aggatcagca cctggcccgc gcggcgctcg ccggtctcga
     1441 cgaagcggcg ctccaccacc agctgggcct ggcccttgtc gtctttcacg acctcgccct
     1501 tgtcgtcctt cttctcgccg atcacgtaca ccgagttgcc gtagagggtg taggtgatgg
     1561 cggtttccgg taccaccacc tgcgattgct cgcccggcag gagcacctcg aggttggcga
     1621 acatgcccgg cagcagcttg ctgtccgggt tgggcagcat ggcgcggacc tgcacgttgc
     1681 gcgtggtttc ctcgaccttg gggttgagcg cgttgatctc gccctcgaag acctcgcccg
     1741 ggtatgccgc gacgctgatg cgcacgcgtt ggccgatggc cagctgcggg taatcctgtt
     1801 cgggcaggaa gaagtcgacg tacaggcggg acaggtcctg cagggtggcg aaggaggtgc
     1861 cggggctcag gtagtcgccg gtgtccacct ggcgaatgcc gatggtgccg gcgaagggcg
     1921 cgaggatgcg cttcttgtcc agctcggcct tgagctgggt gacgctggcc tcggccttga
     1981 gcacctcggc gttgaggcgg tcgaactcgc tcttggagat cgcctggcgc ttgatcaggt
     2041 tctggccgcg ctggtactcg acccgggcga gggcacgtac ggcctcggcg gtggtgagga
     2101 tggcgcgctc cacttcgctg tccagctgca gcagcggctg gccgagggtg accttctcgc
     2161 cggactggaa cagcacgtcc ttgaccgtgc cctgcacctc ggcggtcagg tccacgccct
     2221 ggtaggcctt gagcgtgccg atggccggca ggcggctctg ccacggcttc ttctccgcga
     2281 ccgcggcgga cacgctgacg gccggctgcg gcgccgagaa catctggatc tgctggtaga
     2341 tggagaagcc tttgtaggcg gcgagggcga gcaccacggc gagcacgacg cccagcatga
     2401 tgagcatgcg gcgaagcaac ataatccgaa tccttggcaa ggcagagaga gggcctggag
     2461 aggcgaagcg agcaccttag tgccactcga ttcccaagtc aaaagccggt ggttgccggg
     2521 ttttgcgccg gcattatggc gcaacgctct gtctcgaaaa ccgcacagaa ggcggcgaaa
     2581 tcggcacctc cctgtgccga tcagcgcggg gtcaggcgct cagtcgccgg gtcacctggc
     2641 ttagctcgcc ggagagcccg tgcagggcct ggctggcggc ctgggtgcgt tcgacgtttt
     2701 cctggttgga gctggcgatg gcggtgatct cggtgaggtt gcgcgagatg tcctcggcca
     2761 ccgaggtctg ctcctcggcg gcggtggcga tctgccggtt catgtcgcgg atggcctcca
     2821 ccgcgccggt aatgcgctcg agcatggcgc cggcttcggt cacctgggtc acgccttcct
     2881 cgctgcggct ctgcccgctc tcgatggcgc gcacggcgtt gagtgcgccg gtctgcacgg
     2941 tgtcgatgat ctggtggatc tcggcggtgg actcggcggt gcgctgggcc agggtgcgca
     3001 cctcgtcggc gaccacggcg aagccgcggc cctgctcgcc ggcccgtgcc gcctcgatgg
     3061 cggcgttgag cgccagcagg ttggtctgct cggcgatgcc gcggatcact tccagcacct
     3121 tgccgatacg cgcgctgtcg gcctcgaggc ggcggatcac ctcggcggtg ctggcgatct
     3181 cgccacgcat gccggtgatg gtctggatgg tcgactccat cacccgcccg ccctggcgcg
     3241 ccgagctgtc ggcatcgtcg gcggcgtgcg cggcctcggc ggcgtggcgc gccacttcct
     3301 gggcggtggc ggacatctcg tgcatggcgg tggcgacctg gtcggtgcgc tcgaactgct
     3361 cgttgatgcc cagggtcatg cgcgaggcga tctggttcag ctcgccgctg gcggtatcga
     3421 ggttgccgct gctcaggcgc aggctctcgg tggtgctggc caagaagtcg cgcagggtgt
     3481 tggaggcgat ggccagcatg cccagctcgt cgcggcggct ggtctcgacg cgctggccga
     3541 agttgccatg gctgagctgg tcgacgtgag tgatcagatg gcggatcggg atgatcaggt
     3601 ggcggttgac cagccacagg ctgaacaggg cgatcaccac gctggcgccg agcatcacga
     3661 gagtgcccag cagaatggtg cgctcggcgc cggcgttgat cagcccggcc tgttgcaggc
     3721 tgcgttcgcg cagctggtcg accagtgccg acatctgttc gctggcggcg cgatcgatgc
     3781 cctgcaccgc ggcgtcgccg gcctgggcgt cgccgccggc ggcgaggaag gcctcgcggc
     3841 ccttgcggta gttgacgccg agggtctggt gctcgctgcg caggcgttcc acctgggtgc
     3901 gcagggccgg gtcgtcgccg gccagttcgg ccagctcgcc gagggtatcc tgcaccttgc
     3961 gctcctgggc ctcgaactgg ccccagtatt tggccaggtc gccgctgtcg cggccacgta
     4021 gcaggacgtt cttccactcc tgtacctgga tcttgaattc gacgttggcc gagtcgatca
     4081 ggcgggcggc gtgcagcggg ccgtcgagca ggccgcggta agcctgcatg ccgctggaga
     4141 gaaagctgaa gcaggcgagg gcggtgacca ggatcagcgc caggctgccg ccgagcagcg
     4201 cgagaatctg cgcgcgcagg gatttttgca ggggcatttg cgagagaacc tcttagggtg
     4261 gtgtgcaggc ggcgcgggca ggcgccggca gtgcagatat ccctatcatc cggacatgaa
     4321 acgccggcga caccggccac cggggaggtg gcgcgggtgc gtgtcgtcag tataggtcgg
     4381 ccgcgcgatg ctggccttta gctgccattc ggccgccgag cggatgaccg cggcctgcgc
     4441 ggtgcaggcc gcgtacatcg gcgg
//
LOCUS       DATIHC010000065         2753 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4894, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000065 DATIHC010000000
VERSION     DATIHC010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2753
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4894"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..369
                     /locus_tag="VLF16_01080"
     CDS             <1..369
                     /locus_tag="VLF16_01080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013714312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein phosphodiesterase"
                     /protein_id="HSX69495.1"
                     /translation="LLDLFFDHCLARDWADFADEPLGQFTGRVYRVLAAEAELPERLA
                     FIAPRMAAQDWLGSYTDFAVLEQVLLGMSRRLSRPQMLAGAMGELERLYEPLSEDFRA
                     FYPQLQVFAKENCDMLGNGV"
     gene            395..880
                     /locus_tag="VLF16_01085"
     CDS             395..880
                     /locus_tag="VLF16_01085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69496.1"
                     /translation="MKNVLLLVGVLALTGCGHSRMDYTAVPLDTFAEAQSVVEQVFLE
                     DYVADQRPQSVAVGPEYILLSDGVVTTGKNVASAAPIGTSAIAVGSSRSVTREEGQRI
                     YYNSLGESTLHSRKFKANRYVILIRNAEGAALRRINTTNLAKAQRFLNALEFLRNQRT
                     P"
     gene            complement(890..1666)
                     /locus_tag="VLF16_01090"
     CDS             complement(890..1666)
                     /locus_tag="VLF16_01090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010486265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HSX69497.1"
                     /translation="MNRLRFYFRLARLAAVLLLGVALAGVVAAVERLRRNDLMGLRQR
                     LTRWFLARLSGALPFEVKVRGELPSGPHLWVGNHVSWTDIPLLGQLLPISFLSKAEVR
                     TWPLAGWLAHKAGTLFIRRGSGDSALLARQLHRHLEAGRQLVIFPEGTTTDGQQVRTF
                     HGRLLTGAIEAGVPLQPVAIRYLRDGEIDPIAPFIGDDDLPSHLLRLFKAERAVVEIQ
                     LLAPIASTGQERNALARQAQRAVQTALFGEHGQEKIREAA"
     gene            complement(1763..2506)
                     /gene="olsB"
                     /locus_tag="VLF16_01095"
     CDS             complement(1763..2506)
                     /gene="olsB"
                     /locus_tag="VLF16_01095"
                     /EC_number="2.3.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ornithine N(alpha)-acyltransferase"
                     /protein_id="HSX69498.1"
                     /translation="MTQIARTAERRLQAERLIGPDALREAQALRYAVFSSEFDAKLKG
                     AELGLDMDDFDPHCSHIGVRDLNSGALVATTRLLDHQSASRLGRFYSEEEFSLHGLAH
                     LEGPVLEIGRTCVAPAYRNGGTIAVLWSELAEVLNEGGYRYLMGCASIPMQDGGVQAQ
                     AIMQRLRERHLCTEHLRAEPKTPLPQLDVPGNVIAEMPPLLKAYMRLGAKVCGEPCWD
                     PDFQVADVFILLKRDELCPRYARHFKAAV"
BASE COUNT          429 a          839 c          996 g          489 t
ORIGIN      
        1 ctgctcgacc tgttcttcga tcactgcctg gcccgcgatt gggcggactt cgccgacgag
       61 ccgctggggc agttcaccgg ccgggtctac cgggtgctgg ccgccgaggc ggagctgccg
      121 gagcgcctgg ccttcatcgc cccgcgtatg gcggcgcagg actggctcgg cagttacacg
      181 gacttcgccg tgctggagca ggtgctgctc ggcatgagca ggcgcctgtc gcggccgcag
      241 atgctggcgg gcgccatggg cgagttggag cggctgtacg agccgctcag cgaggacttt
      301 cgtgcgttct atccgcagtt gcaggtgttc gctaaagaga attgcgacat gctcggcaat
      361 ggagtttaga ttcgggtgtt gccatggagt ctgtatgaag aatgtcttgc tgcttgttgg
      421 tgttctggcc ctaactggat gcggccacag tcggatggat tacaccgctg ttcctctgga
      481 tacctttgcc gaagcgcagt cagtagttga gcaggttttt ctggaggact acgttgccga
      541 tcagcgcccg cagtcggtgg cggtggggcc ggagtacatc ctgctttctg atggtgtggt
      601 gacgacgggt aaaaacgtgg caagcgcggc gccaatagga actagcgcga tagctgttgg
      661 ctcgtccaga agcgtcaccc gagaggaggg tcagcggatt tactacaact ccctcggcga
      721 aagcactttg cattcgagga aattcaaggc gaacagatat gtgatcctga tccgcaacgc
      781 tgaaggggcg gctctgcgga ggatcaatac cactaaccta gcgaaagccc agcgtttctt
      841 gaacgcgctg gagtttcttc gaaaccagcg taccccctga taactcacct caggccgctt
      901 ctcgtatttt ttcttgtccg tgttcgccga acagggctgt ctgcaccgcg cgctgtgcct
      961 ggcgggccag ggcgttgcgt tcctggccgg tgctggcgat gggggcgagc agctggatct
     1021 cgaccacggc gcgctcggcc ttgaacaggc gcagcaggtg cgagggcagg tcgtcgtcgc
     1081 cgatgaaggg ggcgatgggg tcgatctcgc cgtcgcgcag gtagcggatg gccaccggct
     1141 gcagcggcac gccggcctcg atggcgccgg tcagcaggcg gccgtggaag gtgcgtacct
     1201 gctggccatc ggtggtggtg ccttcgggga agatcaccag ctggcgtccg gcctccaggt
     1261 gacggtgcag ctggcgcgcc agcagcgcgc tatctccgga acccctgcgg ataaacaggg
     1321 tgccggcctt gtgcgccagc cagccggcca gcggccaggt gcgcacctcg gccttggaca
     1381 ggaaggagat cggcagcagc tggccgagca gcgggatgtc ggtccaggac acatggttgc
     1441 cgacccacag gtgcgggccg ctgggcagtt cgccgcgcac cttgacctcg aagggcaggg
     1501 cgccgctgag gcgggcgagg aaccagcggg tgaggcgctg gcgcagcccc atcaggtcgt
     1561 tgcggcgcag gcgctcgacg gcggcgacca cgccggccag ggccacgccc agcagcagca
     1621 ccgcggccag ccgggccagg cggaaataga agcgcagtcg gttcatcgtg gctctcggtt
     1681 cagggggcga gggatggagc ctgtgccgaa gggcgtcggg ccggagccgg gcgaacaggc
     1741 cgcggactcc ggctcggcag acctataccg cggccttgaa gtggcgtgcg tagcgcgggc
     1801 acagctcgtc gcgcttgagc aggatgaaca cgtcggccac ctggaagtcc gggtcccagc
     1861 agggctcgcc gcacaccttg gcacccaggc gcatgtaggc cttgagcagc ggtggcattt
     1921 cggcgatgac gttgcccggc acgtccagct gcggcagcgg ggtcttcggc tcggcgcgca
     1981 ggtgctcggt gcacaggtgg cgttcgcgca ggcgctgcat gatcgcctgg gcctggacgc
     2041 cgccgtcctg catgggaatg ctggcgcagc ccatcaggta gcggtagccg ccctcgttga
     2101 gcacctcggc cagctcgctc cacagcacgg cgatggtgcc gccgttgcgg taggccggcg
     2161 ccacgcaggt gcggccgatc tccagcaccg ggccttcgag gtgggccagg ccgtgcaggc
     2221 tgaactcctc ctcgctgtag aagcggccca ggcggctggc gctctggtgg tcgagcaggc
     2281 gggtggtggc gaccagcgcg ccgctgttga gatcgcgcac gccgatgtgg ctgcagtgcg
     2341 ggtcgaagtc atccatgtcc aggcccagct cggcgccttt cagcttggca tcgaattcgc
     2401 tgctgaagac ggcgtagcgc agggcctggg cctcgcgcag cgcgtccggg ccgatcaggc
     2461 gttcggcttg caagcggcgt tcggcagttc gggcgatctg ggtcatcgag tggcctccgt
     2521 gagccagcct gcggtgggtt gcggccggtc gatgttgttg ggcaagctca ggctaggaac
     2581 acccggtgtc acctccatga atctttggtg atgcttgcgt gacagacgac gaggaccttt
     2641 tgcgatgccc tggcaaatcc tgctggaaac ccgagaccgc ctgccggcgg gccacctgga
     2701 cgattggtac gccgccctgc tggagcgggt cggcgacgcc ggccccttcg ccc
//
LOCUS       DATIHC010000066         2463 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7121, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000066 DATIHC010000000
VERSION     DATIHC010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2463
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7121"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..466)
                     /locus_tag="VLF16_01100"
     CDS             complement(<1..466)
                     /locus_tag="VLF16_01100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69499.1"
                     /translation="MKFGIAFKLGCLLAAFGVLASGVTGYYSYSSSRNLLLKAAERDL
                     LTATQVLGRNLRGGIDAVARDALILASVAQARRLPTQPEGAIRAHAENDLAELFRAQM
                     QAHPQYMQIRLIGAGDHGLERVRVDRDGHRLLRIDRAKLQEKSHYAYLFETLS"
     gene            complement(463..1506)
                     /locus_tag="VLF16_01105"
     CDS             complement(463..1506)
                     /locus_tag="VLF16_01105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008367333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HSX69500.1"
                     /translation="MTRICPLLVSLAILLPLAPGIAAGAEALRLLAWPGYADADLVER
                     FEQRHGVAVEVTLVGNDDALREKLSTNNGSDYDLIAANTAEIHHYIEQELLQPLQPAR
                     IANTTRQLWRFRDYPRIPGISRDGKVYAIPYTYAEMGLIYDRTQLAEPPRSIASLWDP
                     RFQGRVLAFNGSSHAFSLAAQAAGLDPFRIEAADFPRLTERLIALRRNVLTFYAQPEE
                     AASLFREHRVALLFANYGRQQLKQLRNQGADVGYVIPREGALAWLDCWAISRGARNVA
                     LAEAWIDFALEPPMSRALVERQGLSNTLEEPENLEGADRLIWLRPVEDAERRARLWER
                     ILSGERPPLEETP"
     gene            complement(1611..2192)
                     /locus_tag="VLF16_01110"
     CDS             complement(1611..2192)
                     /locus_tag="VLF16_01110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HSX69501.1"
                     /translation="MSLKSICVFCGASPGARPVYHEAAETLGRSLAERGVTLIYGGGA
                     VGLMGVVADAALAAGGEVIGIIPQSLERAEIGHKGLTRLEVVDGMHARKARMAELADA
                     FIALPGGLGTLEELFEVWTWGQLGYHAKPLGLLDVDGFYARLTDFLDHLVAERFVREQ
                     HRDILQVGESPSELLARMDAWRPTAAPKWVERG"
BASE COUNT          359 a          789 c          929 g          386 t
ORIGIN      
        1 ggctcagggt ctcgaacagg taggcgtaat gactcttctc ctgcagcttg gcgcggtcga
       61 tgcgcagtag gcgatggccg tcgcggtcga cccgcacccg ttccaggcca tggtcgccgg
      121 cgccgatcag gcggatctgc atgtactgcg ggtgggcctg catctgcgcg cggaacagct
      181 cggccaggtc gttctcggcg tgcgcccgga tagcgccttc gggttgcgtt ggcaggcgcc
      241 gggcctgggc cacgctggcc aggatcagtg cgtcgcgggc cacggcatcg atgccgccgc
      301 gcaggttgcg accgagcacc tgggtggcgg tgagcaggtc gcgctcggcg gccttgagca
      361 gcaagttgcg gctgctgctg taggagtagt agccggtgac gccgctggcc agcacgccga
      421 aggcggccag caggcaaccg agcttgaagg cgatgccgaa cttcacggcg tctcctccag
      481 cggcgggcgc tcaccggaga ggatgcgttc ccacaggcgt gcgcggcgct cggcatcctc
      541 caccggacgc agccagatca gacggtcggc cccctccaga ttttccggct cttccagggt
      601 gttggagagg ccctggcgct cgaccagcgc ccggctcatc ggcggctcca gggcgaagtc
      661 gatccaggcc tcggctagcg ccacgttgcg ggcgccacgg ctgatcgccc agcagtccag
      721 ccaggcgagg gcgccttccc gggggatcac ataaccgacg tccgcgccct ggttgcgcag
      781 ctgcttgagc tgctggcgcc cgtagttggc gaacagcagc gccacccggt gctcgcggaa
      841 cagactggcc gcctcctcgg gctgcgcgta gaaggtcagc acgttgcggc gcagggcgat
      901 cagccgctcg gtgaggcgcg ggaagtcggc ggcctcgatg cggaacgggt ccagcccggc
      961 ggcctgggcg gcgagagaaa aggcgtggct gctgccgttg aaggccagta cccgaccctg
     1021 gaagcgtggg tcccacaggc tggcgatgga gcgcggcggc tcggccagct gggtgcggtc
     1081 gtagatcagg cccatctcgg cgtaggtgta gggaatggcg tagaccttgc cgtcgcggct
     1141 gatccccgga atccgtgggt agtcgcgaaa gcgccagagc tggcgcgtgg tgttggcgat
     1201 gcgcgccggc tgcagcggct gcagcagctc ctgctcgatg tagtggtgga tttcggcggt
     1261 attggcggcg atcaggtcgt aatcgctgcc gttgttggtg ctcagcttct cgcgcagggc
     1321 gtcgtcgttg ccgaccaggg tgacttccac cgcgacgccg tggcgctgct cgaagcgttc
     1381 caccaggtcg gcgtcggcgt agccgggcca agccagcagg cgcaaggcct cggcaccggc
     1441 ggcgatgccc ggagccaggg gcaggagaat ggcgagcgac accaggagcg ggcaaatgcg
     1501 ggtcatgacg cggaccgaag ccggaggggt gcccgctcag tgtagatggc agattgcctt
     1561 gatgatgggc ttccagccag gcggcagcgc cgccagccgg atgcgcggtg tcagccgcgc
     1621 tcgacccact tgggcgcggc cgttggccgc caggcgtcca tgcgcgccag cagttcgctt
     1681 ggcgactcgc cgacctggag gatgtcgcgg tgctgttcgc ggacgaagcg ctcggccacc
     1741 aggtggtcga ggaagtcggt gaggcgcgcg tagaagccgt cgacatcgag caggcccagt
     1801 ggcttggcgt ggtagccgag ctggccccag gtccacacct cgaacagttc ttccagggtg
     1861 cccaggccgc cgggcagggc gatgaaggcg tcggccagct cggccatgcg cgccttgcgc
     1921 gcgtgcatgc cgtccaccac ttccaggcgg gtgagcccct tgtggccgat ctcggcgcgt
     1981 tccaggctct gcgggatgat gccgatcacc tcgccgccgg cggccagcgc cgcgtcggcg
     2041 accacgccca tcaggccgac ggcgccgccg ccgtagatca acgtcacgcc gcgttcggcc
     2101 aggctgcggc cgagcgtttc cgcggcttcg tggtagacgg ggcgggcgcc ggggctggcg
     2161 ccacagaaca cgcaaatgga cttcaggctc atgccgatgc tcccgtaagc aaaagggcgc
     2221 acagggtaac ctgtccgggc ggtcaggcga atggttcggg gcaggcgccg ctcgcgccgg
     2281 cggcatagct ggccagcagc gcgtggagaa agtcgtggat cggcatggtg gtggctccgc
     2341 tggggttccg gtgggttccg gtaggtcggg ccgccagact aggccgtggc ggcgcccgcc
     2401 ggctcgttga ttgtttcgat gatggccata gccagcgacc tcagtgcggc agcgaggtca
     2461 ggt
//
LOCUS       DATIHC010000067         2360 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18857, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000067 DATIHC010000000
VERSION     DATIHC010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2360)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2360)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2360
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18857"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..441)
                     /locus_tag="VLF16_01115"
     CDS             complement(<1..441)
                     /locus_tag="VLF16_01115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003242243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HSX69502.1"
                     /translation="MHKRVPSPQQRPERITLPDSWRDADVEDGFCVVAVGDIIITHAI
                     AAKLARRSPQLLDILKRGDVVVGNYECTAIDFNRYDGYPEALSGFSWLLSDADAPADL
                     AGIGFNMMSRANNHALDWGAAGLKMTDALLDDAGIAHAGTGSSLA"
     gene            complement(460..1785)
                     /locus_tag="VLF16_01120"
     CDS             complement(460..1785)
                     /locus_tag="VLF16_01120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSX69503.1"
                     /translation="MPSLSNHKPANDKPADDKRALVVLMLLAVMVISVLDKTIFAFAG
                     PQIIDELKLTPEQFGFIGSAFFFLYSVSGVLVGFLANRVASRWILSGMSLVWMAAQIL
                     TAISTSFYALVASRMLLGAGCGPGTAVTQHAAFKWYAPRERVLPGAWIHIAIMVGAIL
                     GALSLPLLIQHLGWRVGYLILAGVGLLWLVVWLCIGREGRHDEAAGEMTGGTARYRHL
                     LLNRTFIFITLLGFCSYLPNALIYSWVPTYLQKGLGMSPMQSGYVVMAATLGVIALNL
                     LVSSLSQRALKRGASVRLAMVFPPAIACVVGGIAMALMGFVEQGVAMTITLYLIGGIV
                     VNLVTTFSNTTIAYIAPARQRGSMLALHIGLMTSAGMLAPHVVGQAIGWEGGDLVRGF
                     ELAVGLFGIALIAGGALALRLVEPEHDRSTLAARTSHHESNNEPAASQA"
     gene            2033..>2360
                     /locus_tag="VLF16_01125"
     CDS             2033..>2360
                     /locus_tag="VLF16_01125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010483853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family peroxiredoxin"
                     /protein_id="HSX69504.1"
                     /translation="MAIHSAEILWSRGDQDFLDNRYSRAHLWRFDGGVEVPASSSPHV
                     VPPPGSRADAVDPEEAFVASLSSCHMLWFLSLAARDGWRVDAYRDLAEGRMGRNAEGR
                     LAILRVT"
BASE COUNT          360 a          747 c          883 g          370 t
ORIGIN      
        1 ggccaggctg gagccggtgc cggcgtgggc gatgccggcg tcatccagca gcgcgtcggt
       61 catcttcagg ccggccgcgc cccagtccag cgcgtggttg ttggcgcgcg acatcatgtt
      121 gaagccgatg ccggccaggt ccgccggggc gtcggcatcg ctgagcagcc aggagaagcc
      181 ggacagcgcc tcggggtagc cgtcgtagcg gttgaagtcg atggcggtgc actcgtagtt
      241 gcccaccacc acgtcgccgc gcttgagaat gtccagcagt tgcggcgagc ggcgcgccag
      301 cttggccgcg atggcgtggg tgatgatgat gtcgccgacg gcgaccacgc agaagccgtc
      361 ttccacgtcg gcgtcgcgcc agctgtccgg cagggtgatg cgttcggggc gttgctgggg
      421 cgaggggact cgtttgtgca tctcggaaag cttcctggct caggcctggc tcgcggccgg
      481 ctcgttgttg gattcgtggt ggctggtgcg ggcggccagg gtgctgcggt cgtgttcggg
      541 ctcgactagg cgcagggcca gcgcgccgcc ggcgatcagg gcgatgccga acaggccgac
      601 ggccagctcg aagcccctga ccaggtcgcc gccttcccag ccgatggcct ggccgaccac
      661 gtgcggggcg agcatgccgg cgctggtcat caggccgatg tgcagcgcca gcatgctgcc
      721 gcgctgcctg gccggggcga tgtaggcgat ggtggtgttg gagaaggtgg tcaccaggtt
      781 caccacgatg ccgccgatca ggtacagggt gatggtcatg gccacgccct gctcgacgaa
      841 gcccatcagg gccatggcga tgccgccgac cacgcaggcg atggccggcg ggaagaccat
      901 ggccaggcgt acgctggcgc cgcgcttgag tgcgcgctgc gacaggctgg agaccagcag
      961 gttgagggcg atcacgccga gggtggcggc catcaccaca tagccggact gcatcgggct
     1021 catgcccagg cctttctgca ggtaggtcgg tacccagctg tagatcaggg cgttgggcag
     1081 gtagctgcag aagccgagca gggtgatgaa gatgaaggtg cggttgagca gcaggtggcg
     1141 gtagcgggcg gtgccgccgg tcatttcgcc ggcggcctcg tcgtgccggc cctcgcggcc
     1201 gatgcacagc cagaccacca gccagagcaa accgacgccg gcgaggatca ggtagccgac
     1261 gcgccagccc aggtgctgga tcagcagcgg cagcgacagc gcgccgagaa tggcgccgac
     1321 catgatcgcg atatggatcc aggcgcccgg cagcacccgc tcgcgcgggg cgtaccactt
     1381 gaacgcggcg tgctgggtca ccgccgtgcc cgggccgcag ccggcgccga gcagcatgcg
     1441 gctggcgacc agggcgtaga agctggtgct gatggcggtg aggatctgcg cggccatcca
     1501 taccagcgac atgccggaga gaatccagcg gctggccacg cggttggcga ggaagccgac
     1561 cagcacgccg gacaccgagt agaggaagaa gaaggcgctg ccgatgaagc cgaactgctc
     1621 gggggtgagc ttgagctcgt cgatgatctg cggcccggcg aacgcgaaga tggtcttgtc
     1681 cagcacgctg atgaccatca cggccagcag catcagaacc accagcgcgc gcttgtcgtc
     1741 ggccggcttg tcgttggccg gcttgtggtt ggaaagggac ggcatggatc gaatctcgct
     1801 cggggcatcg gccctcggtg cgtgtccgca tccagggcgt tcggtgaata ggttcgggct
     1861 ccgggcgcgt tccggtcatg cggcgcggcg ctgcgggagc tggtgcggcg cagcatgcct
     1921 caggcgcggc ggctgcggat aatcacctct gcgcatgtgt atcggctttg gttatgtgca
     1981 ccggggcgac gcacggttat gctggtccgc ccgcctggtt cggagacctg cgatggcgat
     2041 ccacagcgct gaaatcctct ggtcgcgcgg cgatcaggac ttcctcgaca accgctacag
     2101 ccgcgcgcac ctgtggcgct tcgatggcgg cgtggaggtg ccggcctcgt cctcgccaca
     2161 cgtggtgccg ccgcccggct cgcgagcgga cgcggtggac ccggaagaag ccttcgtcgc
     2221 ctcgctgtcc agctgccaca tgctctggtt cctgtcgctg gccgcgcgcg acggctggcg
     2281 ggtggacgcc taccgcgacc tggccgaggg ccgcatgggc cgcaacgccg agggccgcct
     2341 ggccatactc cgcgtcacct
//
LOCUS       DATIHC010000068         1516 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37469, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000068 DATIHC010000000
VERSION     DATIHC010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37469"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(219..617)
                     /locus_tag="VLF16_01130"
     CDS             complement(219..617)
                     /locus_tag="VLF16_01130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003135903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA sensor PanZ family protein"
                     /protein_id="HSX69505.1"
                     /translation="MPVLVEIVSRPSVQDHTDLGKVYADAPDWLLPPYASVDALLADG
                     IGAGRLIAGRFNDRLLGAALLERGEACWRLSHLCVRKVTRKRGVARRILDEAKRLASE
                     AGKPLHLAAPLNHLESQALAARTGLPLDSL"
     gene            765..1358
                     /gene="hisB"
                     /locus_tag="VLF16_01135"
     CDS             765..1358
                     /gene="hisB"
                     /locus_tag="VLF16_01135"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HSX69506.1"
                     /translation="MAERTASVERNTLETQIKVSINLDGTGKAKFDIGVPFLEHMLDQ
                     IARHGLIDLDIHCQGDLHIDDHHTVEDVGITLGQAFAKAVGDKKGMTRYGHSYVPLDE
                     ALSRVVIDFSGRPGLQMHVPFTRAVVGGFDVDLFQEFFQGFVNHAQVSLHIDNLRGHN
                     THHQIETVFKAFGRALRMAVELDPRMAGQMPSTKGTL"
     gene            1359..>1516
                     /gene="hisH"
                     /locus_tag="VLF16_01140"
     CDS             1359..>1516
                     /gene="hisH"
                     /locus_tag="VLF16_01140"
                     /EC_number="2.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020308798.1"
                     /note="with HisF IGPS catalyzes the conversion of
                     phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide
                     ribonucleotide phosphate and glutamine to
                     imidazole-glycerol phosphate,
                     5-aminoimidazol-4-carboxamide ribonucleotide, and
                     glutamate in histidine biosynthesis; the HisH subunit
                     provides the glutamine amidotransferase activity that
                     produces the ammonia necessary to HisF for the synthesis
                     of imidazole-glycerol phosphate and
                     5-aminoimidazol-4-carboxamide ribonucleotide; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HSX69507.1"
                     /translation="MQTVAVIDYGMGNLHSVAKALEHVGAGKVLVTSDAQVIREADRV
                     VFPGVGAIR"
BASE COUNT          234 a          499 c          531 g          252 t
ORIGIN      
        1 gctgttgatg gcaggtgcgg cgctggtctg ggtgttctgg ctggcgccgc agcaactggc
       61 gctggggctc ggcttggtcg ggctgtgcct ggcgagtctg ctgtggctgg tctggctggc
      121 tttccggccg cagatggcgc aggcgtagcc cggatgaaat ccggggctga gttgcctgtt
      181 cccggatgtg atccgggcta cgggagcggg tgtcgtctct acaggctgtc gagcggcagg
      241 ccggtgcgcg cggccagcgc ctggctctcc aggtgattca gcggcgcggc caggtgcagc
      301 ggcttgcccg cttcggatgc caggcgcttg gcctcgtcga ggatgcgccg ggccacgccg
      361 cgcttgcgcg tgaccttgcg cacgcatagg tgcgacaggc gccagcaggc ctcgccacgt
      421 tccagcagcg cggcgccgag caggcggtcg ttgaagcgcc cggcgatcag cctgccggcg
      481 ccgatgccgt cggccagcag cgcgtcgacg ctggcgtagg gcggcagcag ccagtccggc
      541 gcgtcggcgt agaccttgcc caggtcggtg tggtcctgca cggatgggcg gctgacgatt
      601 tcgaccagaa cgggcatgac ggcttcctcg cgagaacagg ctgcgcagtg taaggccggg
      661 ccgatcacct cgatagcctg cggcccgacc gccgcggtag ccgcccaagc cacggggccc
      721 ctataatggc ggccttttcc gtgagcagcc gtggagctgg agagatggcc gaacgtacgg
      781 catccgtcga gcgcaacacc ctggagaccc agatcaaggt ctcgatcaac ctggatggta
      841 ccggcaaggc caagttcgac attggcgtgc cgttcctcga gcacatgctc gaccagatcg
      901 cccgtcatgg cctgatcgac ctggacatcc attgccaggg cgacctgcac atcgacgacc
      961 accacaccgt ggaagacgtc ggcatcaccc tcggccaggc cttcgccaag gccgtcggcg
     1021 acaagaaggg catgacccgc tacggccact cctatgtccc gctggacgag gcgctgtcgc
     1081 gcgtggtgat cgacttctcc ggtcgccccg gcctgcagat gcacgtgccc ttcacccgtg
     1141 cggtggttgg cggcttcgac gtggacctgt tccaggagtt cttccagggc ttcgtcaacc
     1201 acgcccaggt cagcctgcac atcgacaacc tgcgcgggca caacacccac caccagatcg
     1261 agaccgtgtt caaggccttc ggccgcgcgc tgcgcatggc cgtggagctg gacccgcgca
     1321 tggccgggca gatgccgtcg accaagggca ccctgtaaat gcagacggtc gcagtaatcg
     1381 actacggcat gggcaacctg cactcggtgg ccaaggcgct ggagcacgtc ggcgccggca
     1441 aggtgctggt gaccagcgac gcccaggtga tccgcgaggc ggatcgcgtg gtctttccgg
     1501 gcgtcggtgc gattcg
//
LOCUS       DATIHC010000069         1558 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_39885, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000069 DATIHC010000000
VERSION     DATIHC010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1558
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39885"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1160
                     /locus_tag="VLF16_01145"
     CDS             <1..1160
                     /locus_tag="VLF16_01145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019821888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NAD-glutamate dehydrogenase"
                     /protein_id="HSX69508.1"
                     /translation="SKQHFIRTLESQGLLDRQIEFLPSDAEIAERKVRGIGLTRPELS
                     VLISYSKIDLKEALLKSLVPDDDYLAREMETAFPARLTQKFGEAMRRHRLKREIVSTQ
                     IANDLVNHMGITFVQRLKESTGMSAANVAGAYVIVRDVFRLPHWWKQIEALDYKVPAE
                     LQLQLMDELMRLGRRATRWFLRSRRENLDAARDVGHFAPRVAELAGRLDELLEGPARE
                     QWLARYQAFVEAGAPEDLARVVAGTSHLYTLLPIIEAADVAGKDASEVATAYFAVGGA
                     LELTWYLQQITGLPVENNWQALAREAFRDDLDGQQRAITIAVLQMADGPKDIEERVAY
                     WLEQHKTLVQRWLAMLAELRAATGTDYAMYTVASRELMDLAQSDKQSVRVS"
     gene            1349..>1558
                     /locus_tag="VLF16_01150"
     CDS             1349..>1558
                     /locus_tag="VLF16_01150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003087739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP synthase"
                     /protein_id="HSX69509.1"
                     /translation="MTDILILTHVDYCAPGHLATVLDAQGLDFTVLRTDLGELDGYDL
                     ERPRAVAVMGGPMSVNDDLPWLAVEI"
BASE COUNT          259 a          539 c          522 g          238 t
ORIGIN      
        1 gctccaagca gcacttcatc cgcacgctgg agtcgcaggg cctgctcgac cgccagatcg
       61 agttcctgcc cagcgacgcc gagatcgccg agcgcaaggt gcgcggcatc ggcctgaccc
      121 ggccggagct gtcggtgctg atctcctaca gcaagatcga cctcaaggaa gcgctgctga
      181 aatccctggt gccggacgac gactacctgg cccgcgagat ggagactgcc ttcccggcgc
      241 gcctgaccca gaagttcggc gaggccatgc gccgccaccg tctgaagcgc gagatcgtca
      301 gcacgcagat cgccaacgac ctggtcaacc acatgggcat caccttcgtg cagcgcctga
      361 aggagtccac cggcatgagc gcggccaacg tcgccggcgc ctatgtcatc gtgcgcgacg
      421 tgttccgtct gccgcactgg tggaagcaga tcgaggcgct ggactacaag gtgccggccg
      481 aactgcaact gcagctgatg gacgagctga tgcgcctggg ccgccgcgcc acccgctggt
      541 tcctgcgcag ccgccgcgag aacctagacg ccgcccgcga cgttggccat ttcgccccgc
      601 gtgtggccga gctggccggg cgtctggacg agctgctcga aggcccggcc cgcgagcagt
      661 ggctggcgcg ctaccaggcg ttcgtcgagg ccggcgcgcc ggaggaccta gctcgcgtgg
      721 tcgccggcac cagccacctg tacaccctgc tgccgatcat cgaggccgcc gacgttgccg
      781 gcaaggacgc cagcgaagtg gccaccgcct acttcgccgt gggcggcgcg ctggagctga
      841 cctggtacct gcagcagatc accggcctgc cggtggaaaa caactggcag gccctggccc
      901 gcgaagcctt ccgcgacgac ctggacggtc agcagcgggc gatcaccatc gccgtgctgc
      961 agatggccga cggtccgaag gacatcgagg agcgcgtcgc ctactggctg gagcagcaca
     1021 agaccctggt gcagcgctgg ctggccatgc tcgccgagct gcgcgcggcc accggcaccg
     1081 actacgccat gtacaccgtg gccagtcgcg agctgatgga cctggcgcag agcgacaagc
     1141 agagcgtgcg cgtttcctga tgcgtgcgac ccctttcccg tccggggaag gggaacactc
     1201 tctctccggt gcgtgtctgc gccggcgagg gtggctccgc ctgtacggct tcggttagcc
     1261 cgctcgacac aatcggttcg tcgagtcgag acaaggtccg tgttccggca cgggccttgc
     1321 ctcggcaagc ggacaacgga gagtagtcat gaccgacatc ctgattctga cccacgtcga
     1381 ttattgtgct ccgggccatc tcgcgaccgt actggacgcg cagggcctcg acttcacggt
     1441 gctgcgcacc gacctcggcg agctggacgg ctacgacctg gagcgccccc gcgcggtggc
     1501 tgtgatgggc gggccgatga gcgtcaacga cgacctcccg tggctcgcgg tggagatc
//
LOCUS       DATIHC010000070         1605 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7159, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000070 DATIHC010000000
VERSION     DATIHC010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7159"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..111
                     /locus_tag="VLF16_01155"
     CDS             <1..111
                     /locus_tag="VLF16_01155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69510.1"
                     /translation="DQQKHNDFVKRMVERGYTEKQVRLLSEWYLRVRKSQ"
     gene            194..1465
                     /locus_tag="VLF16_01160"
     CDS             194..1465
                     /locus_tag="VLF16_01160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019693928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeaH/YhbH family protein"
                     /protein_id="HSX69511.1"
                     /translation="MSYVIDRRLNGKNKSTVNRQRFLRRYREHIKKAVEEAVSRRSIT
                     DMEHGEQISIPGRDIDEPVLHHGRGGRQAIVHPGNKEFNAGDHVPRPSGGGGGRGSGK
                     ASNSGEGMDEFVFQITQEEFLDFMFEDLELPNLVKRHLTGTDTFKTVRAGISSEGNPS
                     RINIVRTLRSAHARRIALSGSSRAKLREVKAELERLRREEPDNFGDIQALEAELERLS
                     VRINRIPFLDTFDLKYNLLTKQPNPSSKAVMFCLMDVSGSMTQATKDVAKRFFILLYL
                     FLKRNYERIEVVFIRHHTSAKEVDEEEFFYSRETGGTIVSSALKLMQEIMAERYPTNE
                     WNIYGAQASDGDNWNDDSPVCRDILINQIMPFVQYFTYVEITPREHQALWYEYEQVGE
                     AFAASFAQQQLVSAADIYPVFRELFQRRMAT"
     gene            1476..>1605
                     /locus_tag="VLF16_01165"
     CDS             1476..>1605
                     /locus_tag="VLF16_01165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003422714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69512.1"
                     /translation="MNAAEKRRQPLSTGSEWTFELIRQYDREIARIAERYALDTYPN"
BASE COUNT          324 a          554 c          482 g          245 t
ORIGIN      
        1 gaccagcaga agcacaacga cttcgtcaaa cgcatggtcg agcgcggcta caccgagaag
       61 caggtgcgcc tgctgtccga gtggtatctg cgggttcgca agtcgcagta gtctgccatc
      121 ggcaccgcgg cacgttccgc ggtgccggtc gccgtcgggt cgggtcgcac gcgccaggcc
      181 ctgaggagca ttcatgagct acgtcatcga ccggcgtctg aacggcaaga acaagagcac
      241 ggtgaaccgc cagcgcttcc tgcggcgtta ccgtgagcac atcaagaagg ccgtcgagga
      301 ggccgtcagc cggcgctcca tcaccgacat ggagcacggc gagcagatca gcattcccgg
      361 ccgcgacatc gacgagccgg tgctgcacca cggccgtggc gggcggcagg ccatcgttca
      421 ccccggcaac aaggagttca acgccggcga ccacgtgccg cgcccctccg gcggcggtgg
      481 tggccgcggc tcgggcaagg cgagcaattc cggcgagggc atggacgagt tcgtcttcca
      541 gatcacccag gaagagttcc tcgacttcat gttcgaggac ctggagctgc ccaacctggt
      601 caagcgccac ctgaccggca ccgacacctt caagacggtg cgcgccggca tcagcagcga
      661 gggcaacccc tcgcgcatca atatcgtccg caccttgaga tccgcgcatg cccggcgtat
      721 cgccctgtcc ggctccagcc gcgccaagct ccgcgaggtg aaggccgaac tggaacgcct
      781 caggcgcgag gagccagaca acttcggcga catccaggca ctggaggcgg agctggagcg
      841 actcagcgtg cggatcaacc gcattccctt cctcgacacc ttcgacctca agtacaacct
      901 gctgaccaag cagcccaacc ccagctccaa ggcggtgatg ttctgcctga tggacgtgtc
      961 gggctcgatg acccaggcca ccaaggacgt cgccaagcgc tttttcatcc tcctgtacct
     1021 gttcctcaag cggaactacg agcgcatcga agtggtgttc atccgccacc acacgagcgc
     1081 gaaggaggtg gacgaggagg agttcttcta ttcgcgggaa accggtggca ccatcgtctc
     1141 cagcgcgctc aagctgatgc aggagatcat ggccgagcgc tacccgacca acgaatggaa
     1201 catctacggc gcccaggcct cggacggcga caactggaac gacgactcgc cggtgtgccg
     1261 cgacatcctg atcaaccaga tcatgccgtt cgtccagtac ttcacctatg tcgagatcac
     1321 cccgcgcgag caccaggcgc tgtggtacga atacgaacag gtcggcgagg ccttcgccgc
     1381 gtccttcgcc cagcagcagt tggtttccgc cgcggacatc tacccggtgt tccgcgagct
     1441 gttccagcgc cgcatggcca cctgagggca gccccatgaa tgcagccgag aaacgccgcc
     1501 aaccgctctc caccggctcg gaatggacct tcgagctgat ccgccagtac gaccgcgaga
     1561 tcgcccgcat cgccgaacgc tacgcgctgg acacctaccc caacc
//
LOCUS       DATIHC010000071         2251 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28184, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000071 DATIHC010000000
VERSION     DATIHC010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2251)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2251)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2251
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28184"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..344
                     /locus_tag="VLF16_01170"
     CDS             <1..344
                     /locus_tag="VLF16_01170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69513.1"
                     /translation="NGDGAISVDEARVAAPANFRRIDRDASGGVEVQEIAEFTAAESG
                     PDGVWPADVLASVARKTLEYWDGNRDGKVTEAEYADAAVALMLLADADGNREVTREEL
                     QRFRGEAASPQ"
     gene            complement(380..1273)
                     /locus_tag="VLF16_01175"
     CDS             complement(380..1273)
                     /locus_tag="VLF16_01175"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HSX69514.1"
                     /translation="MPARQLYLCLLILGTAFWGVSFTFTKVGVADGSPFVFLGYKFAL
                     AALVLCVIFFRRLRRLDTRTFLAGLAIGLPLCLGNIFQTVGLQHTSITNTAFITGLDV
                     LLIPLFKWALFRKRVEPRIWICCAVALTGLYLIVARAGLSLNPGDIWIMCCAVFFASY
                     VLTVGFFSHKFDPMLTVIVALATCAAGCVFAALFDPRADWAPAQAEFWEGVLFCALLA
                     TAFMYAVQSAAQKHLEEEKVALTYLFEPIFAAFAGALLLGETLDGRTLLGAALIFSAL
                     LIAEIDLRALMARRPRDSRTP"
     gene            complement(1483..>2251)
                     /locus_tag="VLF16_01180"
     CDS             complement(1483..>2251)
                     /locus_tag="VLF16_01180"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013715821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HSX69515.1"
                     /translation="AMAMAALYAGRAVARDLRAEMAVFAVLIGVLGALNAAKLVVILS
                     GGLEALDLNSTFQRTFYIYMSFLGTVLPPCVVWLVLRRLTDELRSMAAHDPLTRVLNR
                     RGLMEGLEAHFRSRTAGPAYLLIVDIDHFKDINDTHGHQVGDRVICHVAQVLKASARQ
                     GDLICRLGGEEFVVISLDTTRDGALQLAERTRAAIEHSEVPGTSPGRPLRCTVTLGVS
                     AGLTSAQALDACIQQADAALYRGKAAGRNRVECVHAP"
BASE COUNT          415 a          724 c          795 g          317 t
ORIGIN      
        1 ccaacggcga cggcgcgatc tccgtggacg aggcgcgggt cgcggcgccg gcgaatttcc
       61 gccgcatcga ccgcgatgcc agcggcggcg tcgaggtgca ggagatcgcc gagttcacgg
      121 ccgccgagtc cggtcccgac ggggtatggc cggccgacgt gctggcatcg gtggcgcgca
      181 agacgctgga atactgggac ggcaaccgcg acggcaaggt gaccgaagcg gagtacgcgg
      241 acgctgccgt cgccctgatg ctgctggccg acgcagacgg caaccgcgag gtgacccgcg
      301 aggagctgca gcgcttccgc ggcgaggccg cgtcacccca ataatcgggc ctgggccgtg
      361 gccggcccct atcgggggct cagggcgtgc gtgagtctcg cggccgacgc gccatgagcg
      421 cacgcagatc gatctcggcg atcagcagtg cggagaagat cagcgcggcg cccagcaggg
      481 ttctgccgtc cagggtctcg ccgaggagca gcgcgccggc gaaggcggca aagatcggct
      541 cgaacaggta ggtgagcgcc accttttctt cttccagatg tttttgcgcg gcgctctgca
      601 ccgcgtacat gaacgcggtg gcgagcagcg cgcagaacag cacgccctcc cagaattcgg
      661 cctgcgccgg tgcccagtcg gcccgggggt cgaaaagcgc ggcgaacacg cagcccgcgg
      721 cgcaggtggc cagcgcgacg atgaccgtga gcatcgggtc gaacttgtgc gagaagaacc
      781 ccacggtgag cacgtacgag gcgaagaaca ccgcgcagca catgatccag atatcgcccg
      841 ggttcaggct cagcccggcc cgggccacga tcaggtagag gccggtcagc gccacggcgc
      901 agcagatcca gatgcgcggc tcgacgcgct tgcggaacag cgcccatttg aagagcggga
      961 tgagcaatac atccaggccg gtgatgaagg ccgtattggt gatgctggtg tgctgcaggc
     1021 cgacggtctg gaagatattg cccaggcaca gcggcaggcc tatcgccagg ccggccagga
     1081 aggtgcgcgt gtcgagccgc ctcaggcgcc tgaagaagat cacgcacaga accagcgccg
     1141 cgagggcgaa tttgtagccg aggaacacga agggtgaacc gtctgcgacg cccaccttgg
     1201 tgaaggtgaa cgagacgccc cagaacgccg ttccaaggat cagcagacac aagtaaagct
     1261 gacgagcagg catgcgaaaa ccatccagtg agttggagtg gttagagcat gcggagggag
     1321 gccgcaagaa agcccgacga tgccttcaat ctcttctcta acgttaaggc agatcggtac
     1381 agcgctttca tctgcggcta ttagccaatc tgggcgcgag cttgtcaact cgcactggcc
     1441 tgcgcctgca tcgccgcaac gagccctatg gcggctgccc gatcacggcg cgtgaacgca
     1501 ctcgacgcga ttgcgccccg cggccttgcc ccggtacagc gcggcatccg cctgctggat
     1561 gcaggcgtcg agggcctgcg cactggtgag tcccgccgag acgccgaggg tcacggtgca
     1621 gcgcagcggc cggcccgggc tggtgccggg gacttcgctg tgttcgatcg ccgcgcgggt
     1681 gcgttctgcc agctgcaagg cgccgtcccg ggtcgtgtcc aggctgatca ccacgaactc
     1741 ctcgccaccc agccggcaga tcagatcgcc ctggcgggcg ctggccttga ggacctgggc
     1801 gacgtggcag atcacccggt cgcccacctg gtggccatgg gtgtcgttga tgtccttgaa
     1861 gtgatcgata tcgacgatca gcaggtaggc cggcccggcc gttcgcgagc ggaagtgcgc
     1921 ctccaggcct tccatcagcc cgcgccggtt cagcacccgg gtgagcgggt cgtgggcggc
     1981 catgctgcgc agttcgtccg tgagccggcg cagcaccagc cagaccacgc acggcggcag
     2041 cacggtgccc aggaaggaca tgtagatgta gaaggtccgc tgaaaggtgc tgttcaggtc
     2101 gagggcctcg aggccgccgg aaaggatcac caccagcttc gcggcattga gcgcgccgag
     2161 gacgccgatc agcacggcga acaccgccat ctcggcgcgc aggtcccgcg caacggcgcg
     2221 gccggcgtag agcgcggcca tggccatggc c
//
LOCUS       DATIHC010000072         3201 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21102, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000072 DATIHC010000000
VERSION     DATIHC010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3201
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21102"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..392
                     /locus_tag="VLF16_01185"
     CDS             <1..392
                     /locus_tag="VLF16_01185"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016986712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HSX69516.1"
                     /translation="TRTVLFGDCDPAGIVYTPRIAYFAIEAIHEFLSHRLGGEGLRKV
                     FAMGVLPPARALSIEFLAPMTWDEVITLEVRSETPGATSFSFAVEGRQASGEVTFRAA
                     MTQVCICAESKQPTALPEALRQALTGD"
     gene            complement(632..2323)
                     /gene="fadD1"
                     /locus_tag="VLF16_01190"
     CDS             complement(632..2323)
                     /gene="fadD1"
                     /locus_tag="VLF16_01190"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015478361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase FadD1"
                     /protein_id="HSX69517.1"
                     /translation="MTDNFWKDKYPVGVAAEIDADQYPNIQAVLKESCQRFADKPAFS
                     NMGKTLTYGELYQLSGVFAAYLQNHTDLKPGDRIAVQLPNVLQYPVVVFGAMRAGLIV
                     VNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEEVLPKTGVKHVIVTEVGDLLPPL
                     KRLLVNAVVKHVKKMVPAFNLPQAVKLNKALAMGRGKAFTEANPSNGDIAVLQYTGGT
                     TGVAKGAMLTHRNLVANMLQSKALMGSNLGEGCEIVICPLPLYHIYAFTFHCMAMMLT
                     GNHNILITNPRDLPGTVKELSNWKFTTFVGLNTLFVALCNNEDFRRLDLSSLKLTLSG
                     GMALQLATAERWKEVTGCSICEGYGMTETSPVATVNPYQNIQIGTIGIPVPSTLCKVI
                     DDAGNDLPLGERGELCVKGPQVMKGYWQRQEATDEILDSEGWLKTGDIAVIQDDGYLR
                     IVDRKKDMILVSGFNVYPNELEDVLATLPGVLQCAAIGVPDEKSGEAIKVFVVVKPGE
                     SLTKEQVMEHMRANLTGYKVPRFVEFRDTLPTTNVGKILRRELRDEELKKLAATA"
     gene            complement(2554..>3201)
                     /locus_tag="VLF16_01195"
     CDS             complement(2554..>3201)
                     /locus_tag="VLF16_01195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HSX69518.1"
                     /translation="ATAERWQEVTGCAVVEGYGLTETSPVATTNCYGPLARLGTVGIP
                     VAGTALKVIDDNGVEQPVGERGELCIKGPQVMKGYWQREEATAEVLDAEGWFKTGDIA
                     VIDPDGYVRIVDRKKDMIIVSGFNVYPNEIEEVVMAHPKVASCAAIGVPDDKSGEAVK
                     LFVVAREGGVSVEEIKAFCKENFTGYKVPKHIVLKESLPMTPVGKILRRELRDIA"
BASE COUNT          524 a         1009 c         1048 g          620 t
ORIGIN      
        1 ccacccgcac cgtgttgttc ggcgactgcg atcccgccgg gatcgtctat acgccgcgca
       61 tcgcctactt cgccatcgag gcgattcacg agtttctttc ccaccggctc ggcggcgaag
      121 gcctgcgcaa ggtctttgcg atgggcgtgc tgccgccggc gcgagcgctg tcgatcgagt
      181 ttctcgcgcc catgacctgg gacgaggtga tcaccctcga agtgcgcagc gagactcccg
      241 gcgcgacctc cttcagtttc gccgtggagg gtcgccaggc ctcgggggag gtcacctttc
      301 gcgcggcgat gacccaggtc tgcatctgtg ccgagagcaa gcagccgacc gccctgcccg
      361 aggctctgcg ccaggcgctg acaggagact gagcactgca ctgctcctgc tcctgctcct
      421 gctcctgccg gttgaacatg cgacgcgaaa aagaactggg acacggggtt caaaggctca
      481 ctcacggcaa gtgaactctg cgcccctacc accgctttcg ccgcacgcag aaaccctgcc
      541 cggcccttca cgcgaatggc catgaacagg ctctgcgcca cccagaaacg aaaaagcccc
      601 gccgaggtgg ggcttttcgt caccgaggaa atcaggccgt ggcggccagt ttcttcagct
      661 cctcgtcgcg cagttcgcgg cgcaggatct tgccgacgtt ggtggtcggc agggtgtcgc
      721 ggaattcgac gaagcgcggc accttgtagc cggtgaggtt ggcgcgcatg tgctccatca
      781 cctgctcctt ggtcaggctc tcgcccggct tgaccaccac gaagaccttg atggcctcgc
      841 ccgacttctc gtccggcacg ccgatggcgg cgcactgcag cacgcccggc agggtggcga
      901 gcacgtcttc cagctcgttc gggtacacgt tgaagccgga caccaggatc atgtccttct
      961 tgcgatcgac gatgcgcaga tagccgtcgt cctggatcac ggcgatgtca ccggtcttca
     1021 gccagccttc gctgtcgagg atctcgtcgg tggcttcctg gcgctgccag taacccttca
     1081 tcacctgcgg gcccttgacg cacagctcgc cacgctcgcc cagcggcagg tcgttgccgg
     1141 cgtcgtcgat gaccttgcac agggtcgacg gaaccgggat gccgatggtg ccgatctgga
     1201 tgttctggta cgggttgacg gtggcgaccg ggctggtctc ggtcatgccg tagccttcgc
     1261 agatggagca gccggtgact tccttccagc gctcggcggt ggccagctgc agggccatgc
     1321 cgccggacag ggtcagcttc aggctggaca ggtccaggcg acggaagtcc tcgttgttgc
     1381 acagggcgac gaacagagtg ttgaggccga cgaaggtggt gaacttccag ttcgacagtt
     1441 ccttcaccgt gcccggcagg tcgcgcgggt tggtgatgag gatgttgtgg ttgccggtca
     1501 gcatcatcgc catgcaatgg aaggtgaagg cgtagatgtg atagagcggc agcgggcaga
     1561 tgacgatctc gcagccctcg ccgaggttgg agcccatcag cgccttggac tgcagcatgt
     1621 tggcgaccag gttgcggtgg gtcagcatgg cgcccttggc cacgccggtg gtgccgccgg
     1681 tgtactgcag cacggcgatg tcgccgttgc tcgggttggc ttcggtgaac gccttgccgc
     1741 ggcccatggc cagggccttg ttcagcttga cggcctgcgg caggttgaac gccgggacca
     1801 tcttcttcac gtgcttgacc acggcgttga ccagcaggcg cttgagcggc ggcagcaggt
     1861 cacccacctc ggtgacgatg acgtgcttga cgccggtctt cggcagcact tcctcggcca
     1921 ggtgggccat gttggccagg cagaccagcg ccttggcgcc ggagtcgttg aactggtgtt
     1981 ccatctcccg cgcggtgtac agcgggttgg tattgaccac gatgagcccg gcgcgcatgg
     2041 caccgaagac cacgaccggg tactgcagga cgttgggcag ctggacggcg atgcggtcgc
     2101 ccggcttgag gtcggtgtgg ttctgcaggt aggcggcgaa aacgccggag agttggtaca
     2161 gctcgccgta ggtcagggtc ttgcccatgt tgctgaaagc aggcttatcg gcaaagcgtt
     2221 ggcaggactc tttcagtacg gcctggatat tggggtactg gtcggcgtcg atttcggcag
     2281 cgacaccaac agggtatttg tccttccaga agttatcggt catggaagcc tactcctgag
     2341 caacagcttg tctacaccgc gcacggtggc gggttgtttg ttgtgatgat tgaccttgac
     2401 gcgaggtggg accggcgcaa agcgtgccga gagtagcagc tttgccaggg gtcgcctagc
     2461 accaaacatg gccacggcgg tcaaaaaaat gaccgaacat cactgcccgg tcatcttttc
     2521 gaaacccgag cgaaatgccc ggaatacagc ggttcaggcg atatcgcgca gctcgcgacg
     2581 gaggatcttg ccgaccggcg tcatgggcag ggactccttc agcacgatgt gcttggggac
     2641 cttgtagccg gtgaagtttt ccttgcagaa agccttgatc tcttccacgg aaacgccgcc
     2701 ctcgcgggcc accacgaaca gcttgaccgc ctcgcccgac ttatcgtccg gcacgccgat
     2761 ggcggcgcag ctggcgacct tcgggtgggc catcaccact tcctcgatct cgttcgggta
     2821 cacgttgaag ccggagacga tgatcatgtc cttcttgcgg tcgacgatgc gcacgtagcc
     2881 gtccgggtcg atcaccgcga tgtcgccggt cttgaaccag ccctcggcgt ccagcacctc
     2941 ggcggtggcc tcttcgcgct gccagtagcc cttcatcacc tgagggccct tgatgcacag
     3001 ctcgccgcgc tcgccgaccg gctgctcgac gccgttgtcg tcgatcacct tgagcgcggt
     3061 gccggccacc gggatgccga ccgtgcccag gcgggccagc gggccatagc agttggtggt
     3121 ggccaccggc gaggtttcgg tgaggccgta gccctcgacc accgcgcagc cggtcacttc
     3181 ctgccagcgc tcggcggtgg c
//
LOCUS       DATIHC010000073         1518 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30550, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000073 DATIHC010000000
VERSION     DATIHC010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30550"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(40..711)
                     /gene="gspM"
                     /locus_tag="VLF16_01200"
     CDS             complement(40..711)
                     /gene="gspM"
                     /locus_tag="VLF16_01200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014852468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspM"
                     /protein_id="HSX69519.1"
                     /translation="MNKWLQRWQGMAAREQWLTYGVGLALLGMLYLLLIGDPLAARVA
                     SKESAIQLAKGRSAEAASGIADLQAKLDADPNGPYRSALLVASASREELIRQIDQDTA
                     ELITPEKMKAVLESLLQAQQGLSLMGMQSFSEPVQLAQTASPATPGEAPALASATLYR
                     HGLILELEGGYFDLLQYLNAVQQSGWKLNWDSLDYQVGEAGPSRARISLKLFTLSRKA
                     GWVGV"
     gene            complement(704..1315)
                     /locus_tag="VLF16_01205"
     CDS             complement(704..1315)
                     /locus_tag="VLF16_01205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003299201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilN domain-containing protein"
                     /protein_id="HSX69520.1"
                     /translation="MQNLNLYQVERRRRDGPEKAHMLLGLALLVLVCLVHAGWQGWQA
                     HAAGQELAAAEAVAQESETRLAAAKASFVEPQLDERLPTELAAQEESNRELQRLIAYL
                     KALSQRQNMGFVAPLQALADHHPQGGLWLTGIQLNEGGTQMRLQGRSQNQELLPIYLE
                     ALGRSPVFDGREFARLDVERGEDQLLHFDLSSRPADQEKKADE"
     gene            complement(1315..>1518)
                     /locus_tag="VLF16_01210"
     CDS             complement(1315..>1518)
                     /locus_tag="VLF16_01210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014821226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MSHA biogenesis protein MshI"
                     /protein_id="HSX69521.1"
                     /translation="YINRLLLLPTKRDGAAALQALGSGLAVKLQALDLRELFPGQPAA
                     ELDGAEQAYCMAAVGAALRQEVL"
BASE COUNT          216 a          538 c          517 g          247 t
ORIGIN      
        1 gccagcgcgc tgcccagcag cagcgcgagt aacaggtttc tagacaccga cccatcccgc
       61 cttgcggctc aaggtgaaga gtttcaggct gatcctggcc cggctcgggc cggcctcgcc
      121 gacctggtag tcgaggctgt cccagttcag tttccagccg ctctgctgca cggcgttcag
      181 gtactgcaac aggtcgaagt agccgccctc cagctcgagg atcaggccgt gtcggtacaa
      241 cgtggcggag gccagcgccg gcgcctcgcc cggtgtcgcc gggctggcgg tctgggccag
      301 ctggaccggc tcgctgaagc tctgcatgcc catcaggctc aggccctgct gggcctggag
      361 caggctctcc agcacggcct tcatcttctc cggggtgatc agctcggcag tgtcctggtc
      421 gatctgccgg atcagctcct cacggctggc cgaggccacc agcaaggcgc tgcggtaggg
      481 gccgttggga tcggcatcga gcttggcctg caagtcggcg atgcccgagg ccgcttccgc
      541 cgagcggccc ttggccagct ggatggccga ctccttggac gccacccgcg ccgccagcgg
      601 atcgccgatc agcagcaggt agagcatgcc gagcaaggcc agccccacgc cgtaggtcag
      661 ccactgttcg cgggcggcca tgccctgcca gcgctgcagc cacttattca tcggccttct
      721 tctcctggtc ggcgggacgc gaggacaggt cgaagtgcag caactggtcc tcgccgcgct
      781 ccacgtccag gcgcgcgaac tcgcggccgt cgaacaccgg gctgcgcccc agcgcctcga
      841 ggtagatcgg cagcagctcc tggttctggc tgcgcccctg cagacgcatc tgcgtgccgc
      901 cttcgttcaa ctggatgccg gtcagccaca gcccgccctg cgggtgatgg tcggccagtg
      961 cctgcagcgg cgcgacgaag cccatgttct gccgctggga aagtgccttg aggtaggcga
     1021 tcaggcgctg cagctcgcga ttgctctctt cctgcgccgc cagttcggtg ggcagccgct
     1081 cgtccagctg cggctcgacg aagctggcct tcgccgcggc gagacgggtc tcgctctcct
     1141 gcgccacggc ctccgcggcg gccaattcct ggccggcggc atgtgcctgc cagccctgcc
     1201 agccggcgtg gaccaggcag accagcacca gcagcgccag gcccagcagc atatgagcct
     1261 tctcggggcc gtcgcggcgg cggcgttcga cctggtagag gttgaggttc tgcatcagag
     1321 aacctcctgg cgcagcgcgg cgccaacggc ggccatgcag taggcctgct ctgcgccatc
     1381 cagctcggcc gccggctggc cggggaacag ttcgcgcagg tccagcgcct gcagcttgac
     1441 cgccaggccg gagccgaggg cctgcagggc ggccgcgccg tcgcgcttgg tcggcagcaa
     1501 cagcaggcgg ttgatgta
//
LOCUS       DATIHC010000074         2842 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30552, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000074 DATIHC010000000
VERSION     DATIHC010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2842)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2842)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2842
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30552"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..857)
                     /locus_tag="VLF16_01215"
     CDS             complement(<1..857)
                     /locus_tag="VLF16_01215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015095096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YCF48-related protein"
                     /protein_id="HSX69522.1"
                     /translation="MNILKWAQWAVLLAATSAPFCRPVVAQGFVDVLDSPAQMSPLAQ
                     HGLLVGLASAGERLVAVGQRGHILHSDDHGRSWQQARVPVSSDLVAVHFPTARHGWAV
                     GHDGVVLHSADGGASWQRQFDGRQVGPVLLNHYRALARSKPGDETVAVLVREAQRMTE
                     EGADKPFLDVWFESERVGYIVGAFNLIFRTEDGGNSWTPWLERTDNPGALNLYAIRPA
                     GGELFIAGEQGLLLKLDRSSGRFVPSPTPYAGSFFGILGTPEVALVFGLRGNVFRSVD
                     AGASWSQVET"
     gene            complement(914..2278)
                     /locus_tag="VLF16_01220"
     CDS             complement(914..2278)
                     /locus_tag="VLF16_01220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014591088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1329 domain-containing protein"
                     /protein_id="HSX69523.1"
                     /translation="MALIQSLMVSALSLAVVAAAQSAVSPEQAAQLGQSLTAVGAEQA
                     GNTDGNIPAYSGGLTSAPSGYQPGSSMRVDPFADEKPRLVIDAKNAAEQAERLTATSR
                     ELLKRFPSFRMDVYPTHRTVALPQRLLDNTRKNATAARTGNDGMALENALPGVPFPLP
                     NDGNEAMWNHLLRYQGHAINSKYDSWNVDASGNASLATTGDAYLEYPLFDPARNDVPA
                     KPDDLFFKSKLYYQGPARRAGEAILLIDAVNPLEKPRRAWQYLPGQRRVKMAPDIAYD
                     TPNPGSAGSSTYDDAWVFNGAMDRFDFKLVGKREMYVPYNTYKLNYHPNAADITTPNH
                     VNPDLMRWELHRVWVVEATLKPGKRHIYSKRTFYLDEDSWIALASDEFDARGQLYRGA
                     FAHMAYSYDAQAPNSDNHMFYDFVSGSYNITGIYGPHGGVKYIEPLSKVQWAPDSLAG
                     TGIR"
     gene            complement(2302..>2842)
                     /locus_tag="VLF16_01225"
     CDS             complement(2302..>2842)
                     /locus_tag="VLF16_01225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008095755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1302 family protein"
                     /protein_id="HSX69524.1"
                     /translation="TLHAVVNGLTTFADTPVWDGASLLMELAYSRWLDVTDNEQLFKG
                     EDWYRGVDKVTRDNYVLGVNFTPTWYQVFPGVDIHLPMTYNVGLDGHSAVQLGGNEDS
                     GSYSVGVGLDLRNQYRFDLKYVDNFGPFDTCESLTDGAAPGANGQYNCAPGQTTAFAG
                     TPAQLKDRGMVTVTFKTTF"
BASE COUNT          433 a          893 c         1029 g          487 t
ORIGIN      
        1 gtctcgacct ggctccagct ggcgccagca tcgacgctgc ggaacacgtt gccgcgcagg
       61 ccgaagacca gcgccacctc cggcgtgccg aggatgccaa agaagctgcc ggcataaggt
      121 gtggggctgg ggacgaagcg cccgctgctg cggtcgagct tcagcagcag gccctgctcg
      181 ccggcgatga agagctcgcc gccggccgga cggatggcgt agaggttgag cgcgccgggg
      241 ttgtccgtgc gctccagcca gggcgtccag ctgttgccgc cgtcctcggt acgaaagatc
      301 aggttgaagg cgccgacgat gtagccgacc cgttcgctct cgaaccagac gtcgaggaac
      361 ggcttgtccg cgccctcctc cgtcatgcgc tgggcctcgc gcaccagcac ggccacggtc
      421 tcatcgcccg gcttgctgcg ggccagtgcc cggtagtggt tgagcaggac ggggccgacc
      481 tggcgcccat cgaactggcg ctgccagctc gcgccgccat cggcgctgtg cagcaccacg
      541 ccatcgtggc cgaccgccca gccgtggcgg gcggtgggaa aatgcaccgc caccaggtcg
      601 gaactgaccg gcacgcgggc ctgctgccag ctgcggccat ggtcgtcgga atggaggatg
      661 tgaccgcgct ggccgaccgc caccaggcgc tcgccggcgc tggccaggcc caccagcagg
      721 ccgtgctggg cgagcgggct catctgcgca ggactgtcca gcacgtcgac gaagccctgt
      781 gcgactaccg gtcgacagaa cggcgcgctc gtcgccgcca gcaacacggc ccactgggcc
      841 cacttgagaa tgttcatgag tcgatctcgt gaaggccacc gacgccgcga ggcgccgatg
      901 gcgtgacgca gggtcagcgg atgccggtgc cggcgaggga gtccggagcc cactgcacct
      961 tggagagcgg ctcgatgtac ttcacgccgc cgtgcgggcc gtagatgccg gtgatgttgt
     1021 aactgccgga gacgaagtcg tagaacatgt ggttgtccga gttcggcgcc tgggcgtcgt
     1081 agctgtaggc catgtgggcg aaggcgccgc ggtacagctg gccacgcgca tcgaactcgt
     1141 cggaggccag ggcgatccag ctgtcctcgt cgaggtagaa ggtgcgcttg ctatagatgt
     1201 ggcgcttgcc gggcttgagc gtggcctcga ccacccacac gcgatgcagc tcccagcgca
     1261 tcaggtccgg gttgacgtgg ttcggcgtgg tgatgtctgc ggcgttcggg tggtagttga
     1321 gcttgtaggt gttgtacggc acgtacattt cccgcttgcc caccagcttg aagtcgaagc
     1381 ggtccatggc gccgttgaat acccacgcgt cgtcgtaggt cgagctgccg gccgagccgg
     1441 ggttcggcgt gtcataggcg atgtccggcg ccatcttcac ccggcgctgc ccaggcaggt
     1501 attgccaggc gcgacgcggc ttctccagcg ggttcaccgc gtcgatcagc agaatcgcct
     1561 cgccggcgcg gcgggccggg ccctggtaat agagcttgga cttgaagaac aggtcgtccg
     1621 gcttcgccgg cacatcgttg cgcgccgggt cgaacagcgg gtactccaga taggcgtcac
     1681 cggtggtggc cagggaagca ttgcccgagg cgtcgacgtt ccaggaatcg tacttggagt
     1741 tgatcgcgtg gccctggtag cgcagcaggt ggttccacat ggcctcgttg ccgtcgttgg
     1801 gcagcgggaa cggcacgccc ggcagagcat tctccagggc catgccgtcg ttgccggtgc
     1861 gcgccgcggt ggcgttcttg cgggtgttgt cgagcaggcg ctgcggcagc gccacggtgc
     1921 ggtgagtggg atagacatcc atgcggaagg acgggaaacg cttgagcagc tcgcgcgagg
     1981 tggcggtgag cctttccgcc tgctcggcgg cgttcttggc gtcgatcacc aggcgcggct
     2041 tctcatcggc gaagggatcc acgcgcatgg agctgccggg ctggtagccg ctcggtgcgc
     2101 tggtcagtcc gccgctgtag gcaggaatgt tgccgtcggt gttgccggcc tgttcggcac
     2161 cgaccgcggt gagactctgc cccagctggg cagcctgctc gggcgagacg gcggactggg
     2221 ctgccgcgac cacggccagc gacagcgcgc tgaccatcag ggattgaata agggccattg
     2281 ctgatctcct gggtacgtgg gtcagaaggt tgtcttgaaa gtgacagtga ccatgccgcg
     2341 gtccttgagc tgcgccggcg tgccggcgaa cgcggtggtc tggccgggcg cgcagttgta
     2401 ctggccgttg gcgcccgggg cggcgccatc ggtcagcgac tcgcaggtgt cgaacgggcc
     2461 gaagttgtcc acgtacttga ggtcgaagcg gtactggttg cgcaggtcga ggccgacgcc
     2521 caccgagtag ctgccggagt cctcgttgcc gcccagctgt acggccgagt ggccgtcgag
     2581 gccgacgttg taggtcatcg gcaggtggat atcgacgccc gggaacacct ggtaccaggt
     2641 cggcgtgaag ttcaccccga gcacatagtt gtcgcgggtg accttgtcga cgccgcggta
     2701 ccagtcctcg cccttgaaca gctgctcgtt gtccgtcacg tccagccagc ggctgtaggc
     2761 cagctccatc agcagcgagg cgccgtccca caccggggtg tcggcgaagg tggtcaggcc
     2821 gttgaccact gcgtgcaggg tg
//
LOCUS       DATIHC010000075         3453 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_14105, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000075 DATIHC010000000
VERSION     DATIHC010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3453)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3453)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3453
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14105"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..399
                     /locus_tag="VLF16_01230"
     CDS             <1..399
                     /locus_tag="VLF16_01230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004373364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF188 domain-containing protein"
                     /protein_id="HSX69525.1"
                     /translation="VVKFALKRGFEVVLVAGQAVARPNFACVKLVVVPSGPDAADDHL
                     VEHAVPGELVICSDIPLADRLVKKGVAALDPRGREFDERNMGDKLATRNLFADLRDQG
                     QMGGGQAAYSDKDRQAFANALDRILTRLAR"
     gene            complement(545..1015)
                     /locus_tag="VLF16_01235"
     CDS             complement(545..1015)
                     /locus_tag="VLF16_01235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003457533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HSX69526.1"
                     /translation="MNEPVFELSEEQRQGVEAFFERIPFNRVLGIRIDELRGDRVVMS
                     LPMQPELIGNFVQGILHGGVISSLLDVAGGAMALIGAFNKHQHLSQPERMQRLSKLGT
                     IDLRVDYLRPGRGQAFTATAVLLRSGNKVAVVRTELHSDDGTLVAVGTGTYLCG"
     gene            complement(1107..1778)
                     /gene="elbB"
                     /locus_tag="VLF16_01240"
     CDS             complement(1107..1778)
                     /gene="elbB"
                     /locus_tag="VLF16_01240"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenoid biosynthesis glyoxalase ElbB"
                     /protein_id="HSX69527.1"
                     /translation="MHKRVAVILSGCGVYDGAEIHESVITLLRLDQRGAKVQCFAPNV
                     AQMHVINHLTGEEMPESRNVLTEAARIARGDVMDVRTLAAEQFDALILPGGFGVAKNL
                     SNFAVEGAGCSVQPDVLAAAQAFAQAGKPVGLICISPALAAKIYGEGVSCTLGAQDDP
                     AVEGLTAMGGQHVECAVEDIVEDSERKLVSTPAYMLAESISQAASGINKLVDRVLELV
                     QPAQG"
     gene            1947..3176
                     /locus_tag="VLF16_01245"
     CDS             1947..3176
                     /locus_tag="VLF16_01245"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HSX69528.1"
                     /translation="MNLILLAVPFFFLLIAAELIADRVRGVSYYRLADSLNSLSAGVL
                     SQASGLLSKAIAVLGYAFAYEHLHLTELPNEPWVWVLAFVFYDFCYYWNHRFGHERNV
                     FWASHVVHHQSEDYNLSTALRQTSTGFLLSWIFYLPMALAGVPPLVFITVGALNLLYQ
                     FWVHTRHVPKLGWFEWFFVTPSNHRVHHAQNPIYMDRNYGGVFILWDRLFGTFQEELD
                     EHPVVFGVTTPLRSWNPLWANLQFYIQLWHDAVRAGSWRDRLRIWFMPTGWRPADVAA
                     RYPLEKPDLAAFRKFEVPLSRGQKLYAALQFAGYVAGTSWLLAMATQHGLGVLVGAWL
                     WVAFGLYCIGTWLENRPFARPLEALRLLLNLPALAWAQQVGLLPGGALPWLLLAAWSL
                     GNLLWLFWPRGDRLQTA"
     gene            3291..>3453
                     /locus_tag="VLF16_01250"
     CDS             3291..>3453
                     /locus_tag="VLF16_01250"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253930.1"
                     /note="catalyzes the formation of porphobilinogen from
                     5-aminolevulinate; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HSX69529.1"
                     /translation="MSFTPANRLFPATRLRRNRRDDFSRRLVRENVLTVDDLILPVFV
                     LDGDNRRESI"
BASE COUNT          494 a         1163 c         1170 g          626 t
ORIGIN      
        1 gtggtgaagt tcgccctcaa gcgcggcttc gaagtggtgc tggtcgccgg ccaggccgtg
       61 gcgcggccga acttcgcctg cgtgaagctg gtggtggtac cgagcgggcc ggacgcggcg
      121 gacgaccatc tggtggagca cgccgtgccc ggcgagctgg tgatctgcag cgacatcccg
      181 ctggccgacc gcttggtgaa gaagggcgtg gcggcgctgg acccgcgcgg ccgcgagttc
      241 gacgagcgca acatgggcga caagctggcc acccgcaacc tgttcgccga cctgcgtgac
      301 cagggccaga tgggtggcgg ccaggcggcc tattcggaca aggaccggca ggcctttgcc
      361 aatgcgctgg accgtatcct cacccgcctg gcgaggtaag cggggccacg gagtggaggc
      421 cttcccggat tgcatccggg ctacgagtct cacgagggaa gggggctcgg tgtgagggct
      481 cggcggcccg ctcaggtagc cctcggtggg tttcggtgcg cacggcgcac cctaccgttc
      541 tccgctagcc gcacaggtag gtgccggtgc ctaccgccac cagggtgccg tcgtcgctgt
      601 gcagttcggt gcgcaccact gccaccttgt tgcccgagcg cagcagcacc gcggtggcgg
      661 tgaaggcctg gccgcggccg gggcgcaggt agtcgacgcg caggtcgatg gtgcccagct
      721 tggacaggcg ctgcatgcgc tccggctggc tcaggtgctg gtgcttgttg aaggcgccga
      781 tcagcgccat ggcgccgccg gccacgtcca gcagcgagga gatcaccccg ccgtggagaa
      841 tgccctggac gaagttgccg atcagctccg gctgcatcgg caggctcatc accacgcggt
      901 cgccacgcag ttcgtcgatg cggatgccca gcacccggtt gaacgggatg cgctcgaaga
      961 aggcttccac cccctggcgc tgttcttcgg aaagctcgaa aaccggctcg ttcatgctgc
     1021 gctcctgcgg ctgtgacgct cacgctgccg caggagggcg gctctgaaca gggggcacgg
     1081 cggctgtgcc ctgcactatg gcgcgatcag ccttgtgccg gctggaccag ctccagcacg
     1141 cggtcgacca gcttgttgat gccggaggcg gcctgggaga tggactcggc gagcatgtag
     1201 gcgggggtgg agacgagctt gcgctcgctg tcctcgacga tgtcctcgac cgcgcattcg
     1261 acatgctgtc cgcccatggc ggtgaggcct tccacggccg ggtcgtcctg ggcgccgagg
     1321 gtgcaggaca cgccttcgcc gtagatcttc gccgccaggg ccggggagat gcagatcaac
     1381 ccgaccggct tgccggcctg ggcgaaggcc tgggccgcgg ccagcacgtc cggctgcacg
     1441 ctgcagcctg cgccttcgac ggcgaagttg gagaggttct tggccacgcc gaagccgccg
     1501 ggcaggatca gcgcgtcgaa ctgctcggcc gcaagcgtgc gcacgtccat cacgtcgcca
     1561 cgggcgatgc gcgccgcctc ggtgagcacg ttgcggctct ccggcatttc ctcgccggtg
     1621 aggtggttga tcacgtgcat ctgcgccaca ttgggcgcga agcactggac cttggcgccg
     1681 cgctgatcga ggcgcagcaa ggtgatcacg ctctcgtgga tttccgcgcc gtcgtaaacg
     1741 ccacagccgg aaaggatgac cgcgactcgt ttgtgcatgc tgttctccat gaagccaaag
     1801 gactgtgccg cagtgtcgcc gatcgccctg gcgagcgtcg agcgaggggg tgtcgccaaa
     1861 tgccacatcg cctggcattc cctgccgcga gcgcctgcct gagcaggcat aggatcagct
     1921 taggtcaacc tgcgcagtgc cgaaccatga acctgatcct gctcgccgta ccgttcttct
     1981 ttctcctgat cgccgccgag ctgatcgccg accgtgtgcg cggggtcagc tactaccgcc
     2041 tggcggactc gctcaacagc ctcagcgccg gcgtgctgtc ccaggccagc ggcctgctga
     2101 gcaaggccat cgccgtgctc ggttacgcct tcgcctacga gcacctgcac ctgaccgaat
     2161 tgcccaacga gccctgggtc tgggtgctgg cgttcgtgtt ctatgacttc tgctactact
     2221 ggaaccaccg cttcggccat gagcgcaatg tgttctgggc ctcccacgtg gtgcatcacc
     2281 agagcgagga ctacaacctc tccaccgcct tgcgccagac cagtaccgga ttcctgctga
     2341 gctggatctt ctacctgccg atggccctgg ccggcgtgcc gccgctggtc ttcatcaccg
     2401 tcggcgcgct caacctgctc taccagttct gggtgcatac ccgtcacgtg cccaagctgg
     2461 gctggttcga gtggttcttc gtcaccccct ccaaccaccg cgtgcatcac gcgcagaatc
     2521 ctatctacat ggaccgtaac tacggtggcg tgttcatcct ctgggatcgc ctgttcggca
     2581 ccttccagga ggagctggac gagcatccgg tggtgttcgg cgtgaccacg ccgctgcgca
     2641 gctggaatcc gctgtgggcc aacctgcagt tctacatcca gctgtggcac gacgcggtgc
     2701 gcgccgggtc ctggcgggac aggctgcgca tctggttcat gcccaccggc tggcgcccgg
     2761 ccgacgtggc ggcgcgctac ccgctggaga aaccggacct ggccgcgttt cgcaaattcg
     2821 aggtgccgct gtcgcgcggg cagaagctgt acgccgcgct gcagttcgcc ggctacgtgg
     2881 ccggtaccag ctggctgctg gcgatggcca cgcagcatgg cctgggcgtg ctggtcggcg
     2941 cctggctgtg ggtggccttc ggtctctact gcatcggcac ctggctggag aaccggccgt
     3001 tcgcccggcc gctggaggcc ctgcgcctgc tgctcaacct gccggcgctg gcctgggccc
     3061 agcaggtcgg cctgttgccc ggcggcgcgc tgccctggct gctgctggcg gcctggagcc
     3121 tgggtaacct gctgtggctg ttctggccgc gcggcgatcg cctgcaaacc gcctgagcct
     3181 gcgcggaact gcggcggccc gtcgcagtct gggtgtgacg ttcattattt ggtcataatg
     3241 gccgggtaca actgtcacac tcgcccgccg tgcgggttct ggagtccgtc gtgagcttta
     3301 cccccgccaa tcgcctgttc cccgccaccc gcctgcgtcg caaccgtcgc gacgacttct
     3361 cccgtcgcct ggttcgcgag aacgtgctga ccgtcgacga cctgatcctg ccggtgttcg
     3421 tgctggacgg cgacaaccgt cgcgagtcga ttc
//
LOCUS       DATIHC010000076         7139 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42210, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000076 DATIHC010000000
VERSION     DATIHC010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 7139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7139
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42210"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..841
                     /locus_tag="VLF16_01255"
     CDS             <1..841
                     /locus_tag="VLF16_01255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1302 family protein"
                     /protein_id="HSX69530.1"
                     /translation="PYLGTISSPFYNSAVFGNALDNALRLGTSHYLAQYPEDIRLYGL
                     SFSTNLDTGTALQGELSYRPNMPIQLNGTDVIQSLLNDPARSPLVAEGIRSPEANTLF
                     NGYRRKEVTQAQVTATHSFPQVLGADQLVLVGEAAATWVGGLAGTYGPRYGRNGTYGN
                     GVLVGGNCESVSRTPEHCNDDGFLTRFSWGYRMRASLSYPNAVAGIDLRPNLSWQHDV
                     DGNGPGEGSAFSEGSKAISVGLDASLNNTYNASLAFTDFIDGDYGTRGDRDYVSISLG
                     VNF"
     gene            854..2221
                     /locus_tag="VLF16_01260"
     CDS             854..2221
                     /locus_tag="VLF16_01260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012018232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1329 domain-containing protein"
                     /protein_id="HSX69531.1"
                     /translation="MKQTHSLLRGGALFCSLLLTGSALAAVSADEAAKLQGSLTPIGA
                     ERGASSDGKIPAWDGGLKTPLQFAANGTPLDPFKDEQPLFSIDASNYEQYREQLSPGQ
                     IALLQRFPNSLRLPVYPTHRSVAVEDSTAQAAARNATTTRLVNDGNGLEGFAGVVAFP
                     LPQSGLEVLWNHLTRSRNASSSLTNDSAAPQKDGSYTIMTTQQYFTRRDAVQGLEPDE
                     ARNILYYYSHKITAPSRMVGEVVLVHETLDQIAEPRLSWLYSAGQRRVRRAPSIAYDT
                     AGPTTAGLRTADSRDMFNGAPDRYDWKLVGKKTLYVPYNSYRLASPQLSYEELIQPGH
                     VSPEATRYELHRVWEVVATLKPGMRHIYSKRHYFIDEDTWAILEADHYDSRGELWRVG
                     EAHSFYHPTGKAAVNAMEVTYDLNNGRYIASGLTNEQRQPFDFGYQASASDYSPGALR
                     SKGLR"
     gene            2243..2635
                     /locus_tag="VLF16_01265"
     CDS             2243..2635
                     /locus_tag="VLF16_01265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003247000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF202 domain-containing protein"
                     /protein_id="HSX69532.1"
                     /translation="MSTPETPTPRKPLSQSLLGGEEPDPRFTLANERTFLAWIRTSLA
                     LLGGGIAVETFAGEAFGPQLRLIITLSLLALSILVSAGACLRWLSVERALRHRRALPL
                     PVLVPLLALGCCLAALVLAGLFWPRWHG"
     gene            2628..2939
                     /locus_tag="VLF16_01270"
     CDS             2628..2939
                     /locus_tag="VLF16_01270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003246999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF202 domain-containing protein"
                     /protein_id="HSX69533.1"
                     /translation="MADGPVDAGLQAERTELAWRRTQISLLVIACLALRDQDPPLVLI
                     AVGTAGILWLRQGRRYQRSLAMLRDERGRARLRTVLGTSLALLAMALLAMFKAVTTAH
                     F"
     gene            3055..4443
                     /locus_tag="VLF16_01275"
     CDS             3055..4443
                     /locus_tag="VLF16_01275"
                     /inference="COORDINATES: protein motif:HMM:NF018561.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1254 domain-containing protein"
                     /protein_id="HSX69534.1"
                     /translation="MRLGKKTRWSLGLVAIALLLGGLATHRVLQQARETTQAYLFAYP
                     LVLMELTKQHQKLLGTTSINGFRHSRRFPDARFNSVVSPNVDTLYSIVHFDLRREPVV
                     MSIPDTAGHYYMMPIMDAWTNVVASPGTRTIGSGAKTFLVVGPTWRGEVPAGMEPIRI
                     PTQMAWMIGRIKSRGPADYAEVHVLQDRFRLMPLSAWQGRPQTPTPVAMAELPPLDRA
                     KGPDRQLAGWSREAFFDAFCRLLGENPARAEDAPMLARIRVAGLLDEDCALQQSPLQR
                     LGSTLGYRKAVALLEDSQRLMGEGKTYDGWRIGYELGEYGTRYPQRALVAKIGLGANA
                     PEDAIYPNLHTDAEGRPLSGDRRYRLHFAAGQLPPARAFWSLTLYDERQLLSANPLDR
                     YALGDRNDLHYNPDGSLDILVQHEAPTDEAQRRNWLPAPEGRFNLFLRLYWPQLEVLE
                     RRWLPPAIRTLP"
     gene            complement(5193..7124)
                     /locus_tag="VLF16_01280"
     CDS             complement(5193..7124)
                     /locus_tag="VLF16_01280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016492865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl sulfatase dimerization domain-containing
                     protein"
                     /protein_id="HSX69535.1"
                     /translation="MALLVSAAHAEPPAAGKPATETTRERNQAWLQRLPFDDRADFDD
                     ARRGLIEPFTGVIENADGKPVWNRMAYNFLDGNAPASVNPSLWRFAQLNNIAGLFEVR
                     ERVYQVRGMDLSNMTVIEGDSGLIIIDPLISTETARAGLELYYKHRPRKPVVALIYSH
                     SHVDHFGGVRGVIDEADVKAGKVAVIAPEGFYEHAVSENVLAGPAMMRRAQYMYGALL
                     PRGERGQVDSGLGKGTPTNATVTLIAPTQLIAEPLESHVVDGVKIEFQLTPGTEAPAE
                     MNMYFPQFKTLCMAENATHTQHNVLTLRGALVRDAKIWAHYLDDALVRYGDEAEVLFA
                     QHHWPTWGGGKIRDYLADQRDMYAFLDSQTLRLINQGLTPTEIAAKLESLPPRLANKW
                     YSRDHYGSLSHNVRAVYQRYMGFYDGNPANLDPLPPEDAGRRYVAAMGGADAVLKTAR
                     QAFADGDYRWAAQLLNHLVFAEPDNAAARELQADTLEQLGYQSENATWRNVYLSGAHE
                     LRQGVAEARARNGAPDMVRALTPSMFFDYLAVRIDAMKAAEEDLRINWRFTDLGEDYA
                     LTLRNGVLTHRKGSRHAEADVDLSMTKALLDRIALKETGFLKEATVGDIEIEGGRLKL
                     LKLLGGLDEANPQFNLVTP"
BASE COUNT         1089 a         2601 c         2373 g         1076 t
ORIGIN      
        1 gccgtacttg ggcaccatca gcagcccgtt ctacaacagc gccgtgttcg gcaacgcgct
       61 ggacaacgcc ctgcgcctcg gcacctcgca ctacctggcg cagtaccccg aggacatccg
      121 cctgtacggc ctgtcgttct ccaccaacct ggacaccggc accgcgctgc agggcgagct
      181 gagctaccgg ccgaacatgc cgatccagct caacggcacc gacgtcatcc agtcgctgct
      241 caacgatccg gcgcgctcgc cgctggtggc cgagggcatc cgctcgccgg aggccaacac
      301 cctgttcaac ggctaccggc gcaaggaagt cacccaggcc caggtcaccg ccacccattc
      361 cttcccccag gtgctggggg cggatcagct ggtgctggtg ggcgaggccg cggccacctg
      421 ggtcggcggc ctggcgggca cctacggccc gcgctacggg cgcaacggca cctacggcaa
      481 cggcgtgctg gtcggcggca actgcgagtc cgtctcgcgt acccccgagc actgcaacga
      541 cgacggtttc ctcacccgct tctcctgggg ctaccggatg cgcgccagcc tgagctaccc
      601 caacgcggtg gcgggtatcg acctgcgccc caacctgtcg tggcagcacg acgtggacgg
      661 caacggcccg ggcgagggat cggccttcag cgagggctcc aaggccatca gcgtcggcct
      721 ggatgcctcg ctgaacaaca cctacaacgc cagcctggcg ttcaccgact tcatcgacgg
      781 cgactacggc acccgcggcg accgcgacta cgtgtcgatc agcctcggcg tcaacttcta
      841 agcggagtac ctcatgaaac agacccacag cctgctgcgt ggcggcgcac tgttctgctc
      901 cctgctgctg accggcagcg ccctggcggc cgtgtccgcc gacgaggcgg ccaagctgca
      961 aggcagcctg accccgatcg gtgccgagcg cggcgccagc agcgacggca agataccggc
     1021 ctgggacggc ggcctgaaga ccccgctgca gttcgccgcc aacggcacgc cgctcgaccc
     1081 gttcaaggac gagcagccgc tgttcagcat cgatgcgagc aactacgagc agtaccgcga
     1141 gcagctcagc ccggggcaga tcgccctgct gcagcgcttc ccgaacagct tgcgcctgcc
     1201 ggtgtacccg acccaccgct ctgtcgccgt ggaggacagc accgcgcagg cggcggcgcg
     1261 caacgccacc accacccgcc tggtcaacga cggcaacggc ctggaaggct tcgccggcgt
     1321 ggtcgccttc ccgcttccgc agagcggcct ggaagtgctg tggaaccacc tcacgcgcag
     1381 ccgcaacgcc agctccagcc tgaccaacga cagcgccgcg ccgcagaagg acggcagcta
     1441 caccatcatg accacccagc agtacttcac ccgccgcgac gcggtgcagg ggctggagcc
     1501 ggacgaggcg cgcaacatcc tctactacta cagccacaag atcaccgcgc cgtcgcgcat
     1561 ggtcggcgag gtggtgctgg tacacgagac cctcgaccag atcgccgagc cgcgcctgtc
     1621 ctggctctac agcgccggcc agcgccgcgt gcggcgtgcc ccgagcatcg cctacgacac
     1681 cgccggcccg accaccgccg gcctgcgcac cgcggacagc cgcgacatgt tcaacggcgc
     1741 gccggatcgc tacgactgga agctggtcgg caagaagacc ctctacgtgc cctacaacag
     1801 ctatcgcctg gcctcgccgc agctgagcta cgaggagcta atccagcccg gtcacgtcag
     1861 cccggaggcc acccgctacg agctgcaccg cgtgtgggag gtggtcgcca cgctcaagcc
     1921 cggcatgcgc cacatctaca gcaagcgcca ttacttcatc gacgaggaca cctgggctat
     1981 cctcgaggcc gatcactacg acagccgcgg cgaactctgg cgggtaggcg aggctcacag
     2041 cttctaccac cccaccggca aggccgccgt gaatgccatg gaagtgacct atgacctcaa
     2101 caacggccgc tacatcgcct cggggctgac caacgaacag cgccagccgt tcgacttcgg
     2161 ctaccaggcc agcgcctccg actactcgcc gggtgccctg cgcagcaagg gcctgcgctg
     2221 atccccgcca tcacggtacg ccatgagcac tcccgagacc cccacgccac gcaagccgct
     2281 ctcccagtcc ctgctgggag gcgaggagcc ggacccacgc ttcaccctgg ccaacgaacg
     2341 caccttcctg gcctggatcc gcacctcgct ggccctgctc ggcggcggca tcgccgtcga
     2401 gaccttcgcc ggcgaggcct tcgggcccca gctgcggctg atcatcaccc tcagcctgct
     2461 ggcgctgagc atcctggtca gcgccggcgc ctgcctgcgc tggctctcgg tggagcgcgc
     2521 gctgcgtcat cgccgcgccc tgccgttgcc ggtgctggta ccgctgctgg cgctcggctg
     2581 ctgcctggcg gcgctggtgc tggcggggct gttctggccg cgctggcatg gctgacgggc
     2641 cggtcgacgc cggcctgcag gccgagcgta ccgagctggc ctggcggcgc acgcagatct
     2701 cgctgctggt gatcgcctgc ctggccctgc gcgaccagga cccaccgctg gtgctgatcg
     2761 ccgtgggcac cgccggcatt ctctggctgc gccagggccg gcgctaccag cgcagcctgg
     2821 cgatgctgcg cgacgagcgt ggccgtgccc gcctgcgcac cgtgctcggc accagcctgg
     2881 cgctgctggc gatggccctg ctggcgatgt tcaaggccgt gaccacggcc cacttctgac
     2941 gcattcccac cgggctcgac ggcccggata cacggagacc acgaccatga tcactcctgc
     3001 ggagcggcac gctcgcgccc ggcatttctc tcaacccacg gggagcgcac gcccatgaga
     3061 ctcggcaaga agacccgctg gagcctcggc ctcgttgcca tcgccctgct gctgggcggc
     3121 ctggcgaccc accgggtgct gcagcaggcg cgggaaacca cccaggccta cctgttcgcc
     3181 tacccgctgg tgctgatgga gctgaccaag cagcaccaga agctgctcgg caccacctcc
     3241 atcaacggct tccgccacag ccggcgcttc cccgacgcgc gcttcaacag tgtggtgtcg
     3301 cccaacgtcg acaccctgta cagcatcgtg cacttcgacc tgcgccggga gccggtggtg
     3361 atgagcatcc ccgacaccgc cgggcactac tacatgatgc ccatcatgga tgcctggacc
     3421 aatgtggtgg ccagccccgg cacgcgcacc atcggcagcg gcgccaagac cttcctggtg
     3481 gtggggccga cctggcgcgg cgaggtgccg gccggcatgg agccgatccg catccccacg
     3541 cagatggcct ggatgatcgg ccgcatcaag agccgcggcc ccgcggacta tgccgaggtg
     3601 cacgtcctgc aggaccgctt ccgcctgatg ccgctcagcg cctggcaggg ccggcctcag
     3661 acgccgacgc ccgtggccat ggccgagctg ccgccgttgg accgcgccaa ggggcccgac
     3721 cggcagctgg ccggctggag ccgcgaggcc ttcttcgacg ccttctgccg gctgctgggc
     3781 gaaaacccgg cccgcgccga ggacgcgccg atgctggcac gcatccgcgt cgccggcctg
     3841 ctcgacgagg actgcgcgtt gcagcagtcg ccactgcagc gcctcggcag cacgctcggc
     3901 tatcgcaagg ccgtggccct gctggaggac agccagcgcc tgatgggcga aggcaagact
     3961 tatgatggct ggcgcatcgg ctacgagctg ggcgagtacg gcacgcgcta cccgcagcgc
     4021 gcgctggtgg cgaagatcgg gctgggcgcc aacgccccgg aagacgccat ctaccccaac
     4081 ctgcacaccg atgccgaagg ccgcccgctg tccggcgaca ggcgctaccg gctgcacttc
     4141 gccgccgggc agctgccgcc ggcgcgggca ttctggtcgc tgaccctgta cgacgagcgc
     4201 cagctgctct cggccaaccc gctcgaccgc tacgccctcg gcgaccgcaa cgacctgcac
     4261 tacaacccgg acggctcgct ggacatcctc gtgcagcacg aggcaccgac cgacgaggcg
     4321 caacgccgca actggctgcc ggcgccggag ggccgcttca acctgttcct gcgcctgtac
     4381 tggccgcagc tcgaagtgct ggaacgccgc tggctgccgc cggcgatccg aaccctgccc
     4441 tgatcgacgc ccgtgggctg cgccatgctt ggtctgacgt acgcgatcaa cccaagcatg
     4501 tcgagtgcag cccgccacgg tgcgcacggc gcaccctacc tgcgctctcc gctctcgaga
     4561 caatcgttag cgaggcgcga ccgtagggtg cgccatgcgc accaggcatg cccgcccgag
     4621 gcacgttcgc cggatgaaat ccgccacggt gcgcacggcg caccctactg cgccctccgc
     4681 tctcaggaca atctttcgcg aggcgtacga ccgtagggtg cgccatgcgc accagtcgtg
     4741 cccgaccgag gcacgttcgc cggatgaaat ccgccacggt gcgcacggcg caccctacct
     4801 gcgcccttcg ctctagagac aatctttagc gaggtgcacg accgtagggt gcgccgcgcg
     4861 caccagtcgt gctcgacctg ggcacgcatg ccgggtgcag tccgccatgg tgggcacggc
     4921 gtcccctgcg gcctccgctc tcaagacgat cttttcgcaa ggccacgcga ccgtagggcg
     4981 cgccatgcgc accaggcgtg cccgaccgag gcacgttcgc aggatgaaat ccgccacggt
     5041 gcgcacggcg caccctactg cgccctccgc tctcgagaca ctcttttcgc aaggcgcacg
     5101 accatagggt gcgccatacg cctccagacc tccgcccgga caaaacgaac gccccgcccg
     5161 gtctgcaccg ggcggggcgt cgtgtttgtg cctcagggcg tgacgaggtt gaactgcggg
     5221 ttcgcttcgt ccaggccgcc gagcagcttg agcagcttca ggcggccgcc ctctatctcg
     5281 atgtcgccga cggtggcctc cttgaggaag ccggtttcct tgagcgcgat gcggtcgagc
     5341 agggccttgg tcatgctcag gtcgacgtcc gcctcggcgt ggcgcgagcc cttgcggtgg
     5401 gtcagcacgc cgttgcgcag ggtcagcgcg tagtcctcgc cgaggtcggt gaagcgccag
     5461 ttgatgcgca ggtcttcctc ggcggccttc atcgcgtcga tgcgcaccgc caggtagtcg
     5521 aagaacatgc tcggggtcag cgcccgcacc atgtccggcg cgccgttgcg cgcgcgggcc
     5581 tcggccacgc cctggcgcag ctcgtgggcg ccgctcaggt agacgttgcg ccaggtggcg
     5641 ttctcgctct ggtagccgag ctgctccagg gtgtcggcct gcagctcgcg tgccgccgcg
     5701 ttgtccggct cggcgaacac caggtggttg agcagctgcg ccgcccagcg gtagtcgccg
     5761 tcggcaaagg cctggcgggc ggtcttcagc accgcgtcgg cgccgcccat ggcggccacg
     5821 tagcggcggc cggcgtcctc cggcggcagc gggtcgaggt tggccgggtt gccgtcgtag
     5881 aagcccatgt agcgctggta cacggcgcgc acgttgtggc tgagcgagcc gtagtggtcg
     5941 cggctgtacc acttgttggc caggcgcggc ggcagcgatt ccagcttggc ggcgatctcg
     6001 gtcggggtca ggccctggtt gatcaggcgc agcgtctggc tgtcgagaaa cgcgtacatg
     6061 tcgcgctggt cggccagata gtcgcggatc ttgccgccgc cccaggtcgg ccagtggtgc
     6121 tgggcgaaca gcacctcggc ctcgtcgccg tagcgcacca gggcgtcgtc caggtagtgc
     6181 gcccagatct tcgcgtcgcg caccagggcg ccgcgcaggg tcagcacgtt gtgctgggtg
     6241 tgggtggcgt tctcggccat gcacagggtc ttgaactgcg ggaagtacat gttcatttcc
     6301 gcaggggctt cggtgccggg agtgagctgg aactcgatct tcacgccgtc gaccacgtgg
     6361 ctctccagcg gctcggcgat cagctgggtc ggcgcgatca gggtcacggt ggcgttggtc
     6421 ggcgtgccct tgccgaggcc ggagtcgacc tgcccgcgct cgccgcgcgg cagcagcgcg
     6481 ccgtacatgt actgggcgcg gcgcatcatc gccgggccgg ccagcacgtt ctcgctgacg
     6541 gcgtgctcgt agaagccctc cggggcgatc accgcgacct tgccggcctt gacgtcggcc
     6601 tcgtcgatca ccccgcgcac gccgccgaag tggtcgacgt gcgagtggct gtagatcagt
     6661 gccaccaccg gcttgcgcgg gcggtgcttg tagtacagct cgaggccggc gcgggcagtt
     6721 tcggtgctga tcagcgggtc gatgatgatc aggccgctgt cgccctcgat gacggtcatg
     6781 ttcgacaggt ccatgccgcg gacctggtag acccgctcgc gcacctcgaa caggccggcg
     6841 atgttgttca gctgggcgaa gcgccacagg ctcgggttga cgctggccgg ggcgttgccg
     6901 tcgaggaagt tgtaggccat gcggttccac accggcttgc catcggcgtt ctcgatgacg
     6961 ccggtgaagg gctcgatcag cccgcggcgg gcatcgtcga agtcggcgcg gtcgtcgaac
     7021 ggcaggcgct gcagccaggc ctggttgcgc tcgcgggtgg tctcggtggc gggcttgccg
     7081 gcggccggcg gctcggcgtg ggcagcggaa acgaggagcg ccagagcgag ggcgctgag
//
LOCUS       DATIHC010000077         4341 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2504, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000077 DATIHC010000000
VERSION     DATIHC010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4341
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2504"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..590)
                     /locus_tag="VLF16_01285"
     CDS             complement(<1..590)
                     /locus_tag="VLF16_01285"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003096392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HSX69536.1"
                     /translation="MALLIGLAGLGVGGWSAWQLYQQQGQAAQQLSQVRQVGDVAKQQ
                     VEESENRVAQRLAGLPTADDLATQRDLLVSLQGEQQRLAQSLSGVLGKSREDWRLAEA
                     EHLLRLAMLRLSALQDVESAVALVQGADDILRAQNDPQAFAARGELIKVLEALRSLPQ
                     LDRSGLFLQLAALREQAAQLQLLAPEYILPAEVQSSV"
     gene            complement(700..1488)
                     /locus_tag="VLF16_01290"
     CDS             complement(700..1488)
                     /locus_tag="VLF16_01290"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019341267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HSX69537.1"
                     /translation="MTGWRLLLTRPAAECEALAATLAEAGVFSRSLPLLETEALAETP
                     EQRALIRDLERYCAVIVVSKPAARLGLDLLGRHWPQPPATPRWFSVGAATAQILDDRL
                     APHGLAACCPSAGDDSEALLALPELDQALRTGSPRVLLMRGEGGRELIAETLRARGAQ
                     VDYLELYRRVRPQYPAGTLERLVEAERLNALLASSAQGLDNLRQLAAGAWAQLSRLPL
                     LVPSPRVAELARAAGARQVIDCRGASAAAVLAALRAHPAPASDA"
     gene            complement(1485..2417)
                     /gene="hemC"
                     /locus_tag="VLF16_01295"
     CDS             complement(1485..2417)
                     /gene="hemC"
                     /locus_tag="VLF16_01295"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015278410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HSX69538.1"
                     /translation="MPREIRIATRKSALALWQAEYVKARLEQAHPGLKVSLVPMVSRG
                     DKLLDAPLAKIGGKGLFVKELETALLEHEADIAVHSMKDVPMDFPEGLGLFCICERED
                     PRDAFVSNTYDSLEALPSGSVVGTSSLRRQAQLLARRPDLKIHFLRGNVNTRLAKLDA
                     GEYDAIILAAAGLIRLGFEARIRSSISVDDSLPAGGQGAVGIECRTADAEIHALLAPL
                     HHAETAQRVNAERALNKRLNGGCQVPIACYALLEGEQLWLRGLVGQPDGGLLLRAEGR
                     GTDAELLGVQVAEQLLAQGAEAILKAVYGEAAAE"
     gene            complement(2508..3257)
                     /locus_tag="VLF16_01300"
     CDS             complement(2508..3257)
                     /locus_tag="VLF16_01300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HSX69539.1"
                     /translation="MNVLIVDDEPLARERLARMVGELEGYRVLEPSASNGEEALTLID
                     SLRPDVVLLDIRMPGLDGLQVAGRLCEREAPPAVIFCTAHDEFALEAFDVSAVGYLVK
                     PVRPEALAAALKKAERPNRVQLAALTRPAAGGNGAGPRSHISARTRKGIELIPLEQVI
                     FFIADHKYVTLRHEGGEVLLDEPLKALEDEFGDRFVRIHRNALVARERIERLQRTPLG
                     HFQLYLKGLGADALTVSRRHVAGVRKLMHSL"
     gene            complement(3254..4336)
                     /locus_tag="VLF16_01305"
     CDS             complement(3254..4336)
                     /locus_tag="VLF16_01305"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010489306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HSX69540.1"
                     /translation="MKIHWFNKGQTLAPDDDFFLPELCEPEALLSLVLLAELLVLVLV
                     LAEPMLPGFNWVRLALTSLFVQWIVLLSAALLCRLRPLLARLRAALAGVLCCAMVVGL
                     TLAGTAVADYYELGGPLPRDGEVNLYLRHSLIALIMSALMLRYFYLQSQWRRQQQAEL
                     KARIESLQARIRPHFLFNSLNSIASLVAIDPNKAEQAVLDLSDLFRASLAKPGTLVPW
                     SEELELARRYLSIEHYRLGERLQLEWQVDEVPMDLPIPQLTLQPLLENALIYGIQPRI
                     EGGLVRIEASYREGVFQLCVSNPFQESPERQPSRGTHQALMNIDARLAALFGPAASLS
                     VDRRDGRHFTCLRYPCSRLMQEARAI"
BASE COUNT          664 a         1490 c         1537 g          650 t
ORIGIN      
        1 acgctgctct gcacctcggc cggcaggatg tattcggggg cgagcagctg cagctgggcg
       61 gcctgttcgc gcagggcggc cagttgcagg aacaggccgg agcgatccag ttgcggcagg
      121 ctgcgcaggg cctccagcac cttgatcagc tcgccgcggg cggcgaaggc ctgcgggtcg
      181 ttctgcgccc gcaggatgtc gtcggcgccc tgtaccagag cgaccgcact ctccacgtcc
      241 tgcagcgcgg agaggcgcag catggccaga cgcagcaggt gctcggcctc ggccaggcgc
      301 cagtcctcgc ggctcttgcc gagcaccccg gagaggctct gggccaggcg ctgctgttcg
      361 ccctgcaggg acaccagcag atcgcgctga gtggccaggt cgtcggcagt gggcagaccg
      421 gccaggcgct gggcgacccg gttctcgctc tcctcgacct gctgtttggc cacatccccg
      481 acttgccgca cctggctcaa ctgctgcgcg gcctggcctt gctgctgata cagctgccag
      541 gcactccagc cgccgacgcc gaggccggcc aggccgatca gcaaggccag ccaggccggg
      601 ccactgccct tggcgctggg cgcacgcggc ggctgttcga cggcgggttg cggggtctgt
      661 tcgctgatct gcggggtggt ttcgctcacg agtccttcct tatgcatcag aggccggcgc
      721 cggatgggcg cgcagggccg ccagaacagc cgcagcactg gcgccgcgac aatcgatgac
      781 ctgccgggca ccggccgcgc gggccagttc ggccacccgc gggctgggta ccagcaaggg
      841 tagccgagac agctgcgccc aggcaccggc ggccagttgg cggaggttgt ccaggccctg
      901 ggcgctgctc gccagcaggg cgttgaggcg ttcggcctcg accaggcgct ccagcgtacc
      961 ggcagggtat tgagggcgca cgcgccgata gagttccaga tagtccacct gtgcgccacg
     1021 cgcgcgcagg gtttcggcga tcagctcgcg accgccctcg ccgcgcatca gcagcacgcg
     1081 cggagacccc gtccgcaggg cctggtcgag ttccggcagc gccagcagcg cctcgctgtc
     1141 atcgccggcg ctcgggcagc aggccgccag gccatggggc gcgagacggt cgtcgaggat
     1201 ctgtgcggtg gcggcgccga cgctgaacca gcgcggtgtg gccggtggtt gcggccagtg
     1261 acgaccgagc aggtcgaggc ccaggcgtgc ggccggcttg ctcaccacga tcaccgcgca
     1321 atagcgttcc aggtcccgga tgagggcgcg ctgctcgggc gtctccgcca gcgcctcggt
     1381 ctccagcagt ggcaggctgc ggctgaacac accggcctcg gccagcgtgg cggccagcgc
     1441 ctcgcactcg gcggccgggc gggtcagcag caggcgccag cccgtcactc ggccgcggcc
     1501 tcgccgtaca ccgccttgag gatggcctcg gcaccctggg ccagcagttg ctcggccacc
     1561 tgcacgccga gtaattcggc gtcagtgcca cggccttcgg cgcgcagcag taggccgcca
     1621 tcgggttgac cgaccaggcc gcgcagccac agctgctcgc cttcgagcag cgcatagcag
     1681 gcgatcggca cctggcagcc gccgttgagg cgcttgttca atgcgcgctc ggcgttgacc
     1741 cgctgcgcgg tctcggcgtg gtgcagcggc gccagcagcg catggatctc ggcatcggcg
     1801 gtgcggcact cgatgcccac ggcgccctgg ccgccggccg gcaggctgtc gtccacgctg
     1861 atcgaggagc ggatgcgtgc ctcgaagccg aggcggatca ggccggcggc ggcgaggatg
     1921 atggcgtcgt actcgccggc gtccagcttg gccaggcggg tgttcacgtt gccgcgcagg
     1981 aagtggatct tcaggtccgg tcggcgcgcc agcagctggg cctggcgacg caggctggag
     2041 gtgccgacca cgctgccgga gggcagggcc tcgaggctgt cgtaggtgtt ggagacgaag
     2101 gcgtcgcgcg ggtcttcgcg ctcgcagatg cagaacaggc cgaggccctc ggggaagtcc
     2161 atcggcacgt ccttcatgga gtgcacggcg atatcggcct catgctccaa cagggcggtc
     2221 tccagctcct tcacgaacag gcccttgccg ccgatcttcg ccagcggcgc gtcgagcagc
     2281 ttgtcgccgc gactgaccat gggcaccagg ctgaccttca gccccggatg ggcctgctcc
     2341 agacgggctt tgacgtactc ggcctgccac agggccaggg cgctcttacg ggtggcgatg
     2401 cggatttcgc ggggcatggg caattccaga aagcggactg ccgcggatga taacaggatg
     2461 gccggcgcac gcccgcagcc ctgtcgccgc aggcagcgcc gccggcgtca gaggctgtgc
     2521 atcagcttgc gcacaccggc cacgtggcgg cggctgacgg tcagcgcgtc ggcaccgagg
     2581 cccttgaggt agagctggaa gtggccgagc ggcgtgcgct gcaggcgctc gatgcgctcg
     2641 cgggccacca gggcgttgcg gtggatgcgc acgaagcgat cgccgaactc gtcttccagc
     2701 gccttcagcg gctcgtcgag cagcacttcg ccgccctcgt ggcgcagggt cacgtacttg
     2761 tggtcggcga tgaagaagat aacctgctcc agcgggatca gctcgatgcc cttgcgggta
     2821 cgcgcgctga tatggctgcg cggaccggcg ccgttgccgc cggccgccgg acgggtgagt
     2881 gcggcgagct gcacccggtt gggccgctcg gccttcttca gcgcggccgc caaggcctcg
     2941 ggacggaccg gtttgaccag atagccgacg gcgctgacgt cgaaggcctc cagggcgaat
     3001 tcatcatggg cggtgcagaa gatcacggcc ggcggcgcct cgcgctcgca cagcctgccc
     3061 gcgacctgca ggccatcgag gccgggcatg cggatgtcca gcaggaccac gtccggtcgc
     3121 aggctgtcga tcagcgtcag ggcctcctcg ccattgctgg ccgagggctc gaggacacgg
     3181 tatccctcga gctcgccgac catgcgggcc agtcgctcgc gggcaagggg ttcgtcatcg
     3241 acgatcagca cattcatatt gctcgggctt cctgcatgag tctcgaacaa ggatagcgta
     3301 gacaggtgaa gtggcgcccg tcacggcggt ccacgctgag actcgcggcg ggaccgaaaa
     3361 gtgccgccag tcgcgcgtcg atgttcatca gcgcctgatg ggtcccgcgt gacggttgcc
     3421 gctcggggct ctcctggaac gggttgctca cgcagagctg gaacaccccc tcccggtagc
     3481 tcgcctcgat ccgcaccagc ccgccctcga tgcgcggctg gatgccatag atcagggcat
     3541 tttccagcag cggctgcaag gtcagctggg gaatcggcag atccatcggc acctcatcca
     3601 cctgccattc caactgtagt cgctcgccga gccgatagtg ctcgatcgac agatatcgcc
     3661 tcgccagctc cagttcctcg ctccacggca ccagcgtgcc gggcttggcc aggctggcgc
     3721 ggaacaggtc ggagagatcg agcaccgcct gctcggcctt gttcgggtcg atggccacca
     3781 ggctggcgat gctgttcagg ctgttgaaca gaaaatgcgg gcggatgcgc gcctgcagcg
     3841 actcgatgcg cgccttgagc tcggcctgct gctgccggcg ccattggctc tgcaggtaga
     3901 agtagcgcag catcagcgcc gacatgatca gcgcgatcag cgaatggcgc aggtacaggt
     3961 tgacttcgcc gtcgcgcggc aacgggccgc ccagttcgta gtagtcggcc accgccgtgc
     4021 cggccagggt cagccccacc accatggcgc agcacagcac cccggcgagc gccgcacgca
     4081 ggcgcgccag caacggccgc aggcgacaca acagcgcggc cgagagcagc acgatccact
     4141 gcacgaacag cgaggtcagc gccaggcgca cccagttgaa gccgggcagc atcggctcgg
     4201 ccagcaccag caccagcacc agcagctcgg ccagcagcac caggctgagc agcgcctcgg
     4261 gctcgcacag ttccgggagg aagaaatcgt cgtccggggc gagcgtctgc cccttgttga
     4321 accagtggat cttcatccgc g
//
LOCUS       DATIHC010000078         2791 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18864, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000078 DATIHC010000000
VERSION     DATIHC010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2791
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18864"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..320)
                     /locus_tag="VLF16_01310"
     CDS             complement(<1..320)
                     /locus_tag="VLF16_01310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0043772 - acyl-phosphate
                     glycerol-3-phosphate acyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate acyltransferase"
                     /protein_id="HSX69541.1"
                     /translation="MLWLLALLAYLLGSLSFAILLSRLVGGPDPRASGSGNPGATNML
                     RVAGKKLAVLTLLGDLLKGLLPVLVADLLGFDIQQQAWIGLAAVVGHLYPLYFRFRGG
                     KGVAT"
     gene            396..749
                     /gene="folB"
                     /locus_tag="VLF16_01315"
     CDS             396..749
                     /gene="folB"
                     /locus_tag="VLF16_01315"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003377271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004150 - dihydroneopterin aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006760 - folic acid-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HSX69542.1"
                     /translation="MDKVFIEGLEVDTLIGAYDWERGIRQCLLLDLTFAWDIRPAAAG
                     DDLSKALDYAAVNQQVQAFAAAAQFELVETFAERLAEQLLERFDATWLRLRVTKPGVN
                     AAARAVGVEIERSRP"
     gene            746..1273
                     /gene="folK"
                     /locus_tag="VLF16_01320"
     CDS             746..1273
                     /gene="folK"
                     /locus_tag="VLF16_01320"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HSX69543.1"
                     /translation="MTLIFLGLGSNADRTLHLTAGLDALAGFVQDLRCSPVFESRPVG
                     IKSGNFYNLVVSGRTELSLQELDRRLKFIEADNGRYAPERKGLPLDIDVLLYGDQVGN
                     FDGLVLPRAEILKNAFVLWPLALLAPDVAHPEAGRPFAALWEEARIDQQLWPVPFAWR
                     GVELTPAELIEATSS"
     gene            complement(1291..2526)
                     /locus_tag="VLF16_01325"
     CDS             complement(1291..2526)
                     /locus_tag="VLF16_01325"
                     /EC_number="2.7.7.72"
                     /EC_number="3.1.3.-"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019693930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004810 - CCA tRNA nucleotidyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0001680 - tRNA 3'-terminal CCA addition
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional CCA addition/repair protein"
                     /protein_id="HSX69544.1"
                     /translation="MQIYKVGGAVRDRLLGRPVSDTDWVVVGATAEAMQAQGFRPVGS
                     DFPVFLHPESGEEYALARTERKSGKGYGGFTFHASPDVTLEDDLIRRDLTINAMAEDD
                     HGQVIDPYGGLQDLEDHLLRHVSPAFAEDPLRVLRVARFAARYTPLGFRVATETLALM
                     RQLADSGELEALTPERSWKEISRALMEPRPDVFIQVLRDCGALARLLPELDALFGVPQ
                     PEAHHPEVDTGVHCLMVLHQCALHEQPLTVRWACLLHDLGKGRTPEDEWPRHIAHETR
                     GLKLIDAVNRRCKVPRDCAELARLVGEYHTHGHRALELRPSTLLELLQSFDVYRRPQR
                     FEEFIAACEMDARGRQGLEQRDYPQADYLRGAMQAARAVAVQPLVERGLKGAELGEAL
                     KGERLKALKAYKQAAHPVP"
     gene            complement(2602..>2791)
                     /locus_tag="VLF16_01330"
     CDS             complement(2602..>2791)
                     /locus_tag="VLF16_01330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003085073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SpoVR family protein"
                     /protein_id="HSX69545.1"
                     /translation="DRKPLGDSSGEVVKHLHRLWGFDIHLESMRGDQLVGVQRVPPRN
                     EQGDENEYPRLDLVIPPI"
BASE COUNT          421 a          945 c          978 g          447 t
ORIGIN      
        1 gtggcgacgc ccttgccgcc gcgaaaacgg aaatacagcg gatagaggtg gccgaccacc
       61 gcggccaggc cgatccaggc ctgttgctgg atgtcgaagc cgagcagatc ggcgaccagc
      121 accggcagca ggcccttgag cagatcgccg agcagggtca gcaccgccag cttcttgccg
      181 gccacccgca gcatgttggt ggcgccgggg ttgcccgagc cgctggcgcg agggtccggc
      241 ccaccgacca ggcggctgag caggatggcg aaggacagcg agccgagcag gtaggcgagc
      301 agtgccagca gccagagcat ggtatccatt ccggggcgag ggagccccga ttctagcggc
      361 ggggcgcagg tcttgtcgtg cagcggagac gaggtttgga caaggttttc atcgaaggtc
      421 tggaagtcga caccctgatc ggggcctacg actgggagcg cggcattcgc cagtgcctgc
      481 tgctggacct gacgttcgcc tgggacatcc gtccggccgc cgctggtgac gacctgagca
      541 aggccctcga ctacgccgcg gtcaaccaac aggtgcaggc ctttgccgcc gccgcgcagt
      601 tcgagctggt ggagaccttc gccgaacgcc tggccgagca gctgctggag cgcttcgacg
      661 cgacctggct gcgcctgcgg gtgaccaagc cgggcgtcaa cgccgcggcc cgcgcggtgg
      721 gtgtggaaat cgagcgcagc cggccatgac cctcatcttc ctcggcctgg gcagcaacgc
      781 cgaccgcacg ctgcacctga ccgccgggct cgacgccctt gccgggttcg tccaggacct
      841 gcgttgctcg cccgtgttcg agagccggcc ggtgggcatc aagagcggca atttctacaa
      901 cctggtggtc agcggccgca ccgagctgtc gttgcaggag ctggaccgcc ggctcaagtt
      961 catcgaggcc gacaacggcc gctacgcccc cgagcgcaaa ggcttgccgc tggacatcga
     1021 cgtgctgctc tacggcgatc aggtgggcaa cttcgatggc ctggtgctgc cgcgggcgga
     1081 aatcctgaaa aacgccttcg tgctctggcc gctggcgttg ctggcgcccg acgtggccca
     1141 tcccgaggcg ggccggccgt ttgccgcgct gtgggaagag gctcggatcg accagcagct
     1201 gtggccggta cccttcgcct ggcgcggcgt cgagctgacg ccggccgagc tgatcgaggc
     1261 aacgtcctcg taaggcgcgc cacgctcgcc ctacggtacg gggtgggcgg cctgcttata
     1321 ggccttgagc gccttcagcc gctcaccctt gagcgcctcc cccagttccg cacccttcag
     1381 gccacgctcg accagcggtt gcaccgccac cgcacgcgcc gcctgcatgg cgccgcgcag
     1441 gtagtcggcc tgcggatagt cgcgctgttc caggccctgg cggccgcggg cgtccatctc
     1501 gcaggcggcg atgaattcct cgaagcgctg cggccggcga tacacgtcga agctctgcaa
     1561 cagctccagc agggtgctcg ggcgtagctc cagcgcgcgg tggccatggg tatggtattc
     1621 gccgaccagc cgggccagtt cggcgcagtc gcgcggcacc ttgcagcgcc tgttcaccgc
     1681 gtcgatcagt ttcagcccgc gggtctcgtg ggcgatgtgc cgtggccatt catcctcggg
     1741 cgtgcggccc ttgcccaggt cgtgcagcag gcaggcccag cgcaccgtca gcggctgttc
     1801 gtgcagcgca cactggtgca gtaccatcag gcaatgcacg ccggtatcca cctcggggtg
     1861 atgtgcctcg ggctgcggca cgccgaacag cgcatcaagc tccggcagca ggcgcgccag
     1921 ggcgccgcag tcgcgcagca cctggatgaa cacatccggg cgcggctcca tcagcgcacg
     1981 ggagatctcc ttccagctgc gctcgggcgt cagcgcctcc agttcgccgg agtctgccag
     2041 ctgtcgcatc agcgccaggg tctcggtggc gacacggaag cccagcggcg tataacgcgc
     2101 cgcgaagcgc gccacccgca gcacgcgcag tgggtcctcg gcgaaggcgg gagagacgtg
     2161 acgcagcagg tggtcttcga ggtcctgcag gccgccgtag gggtcgatga cctggccgtg
     2221 gtcgtcctcg gccatggcgt tgatggtcag gtcgcggcgg atcaggtcgt cttcgagggt
     2281 cacgtccggg ctggcgtgga aggtgaagcc gccgtagccc ttgcccgatt tgcgctcggt
     2341 gcgggccagg gcgtattcct cgccgctctc ggggtgcagg aacaccggga agtcgctgcc
     2401 caccgggcgg aatccctggg cctgcatggc ttcggcggtg gcgcccacca ccacccagtc
     2461 ggtgtcgctc actggccggc cgagcaggcg gtcgcgcacg gcgccgccaa ccttgtagat
     2521 ctgcatgtcg attcctccgt tgccgcggag gataagcgaa agcgccgacc ggcgcttacc
     2581 gccggtggct taagggttgg atcagatggg cgggatcacc aggtccaggc gcggatactc
     2641 gttttcgtcg ccctgctcgt tgcgcggcgg cacccgctgc acgccgacca gttggtcgcc
     2701 gcgcatgctt tccaggtgga tatcgaagcc ccacagccga tgcaggtgct tgaccacctc
     2761 gccgctggag tcgccgagcg gtttgcggtc g
//
LOCUS       DATIHC010000079         1845 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18868, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000079 DATIHC010000000
VERSION     DATIHC010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1845)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1845)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1845
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18868"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..191)
                     /locus_tag="VLF16_01335"
     CDS             complement(<1..191)
                     /locus_tag="VLF16_01335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017674933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase"
                     /protein_id="HSX69546.1"
                     /translation="MLKAEYQQRGKVPQDVIEAVQLELPPLAAGQALIKVLAAPINPS
                     DVLTLTGEYGMLPPLPAIGG"
     gene            330..1055
                     /locus_tag="VLF16_01340"
     CDS             330..1055
                     /locus_tag="VLF16_01340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003462315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HSX69547.1"
                     /translation="MLLRVWPWLWILLAPAVVAEPLRIGFGTHKPPYVFEDEDRGIEY
                     EIVTAAVQAAGYEMDARYAPMERLHLALERGDLDGIATTNAYSGIQAHYSEPYIYCQN
                     VAFALTSRGYRIERIADLQRYSISTFQRARHLLGPEFQAMAEANPHYREEAQQINRNR
                     LLYSGRIDVAVGDPRILRYFNREVARQVDTTQPVTQYLLFPPSAYSVGFRLREQRERF
                     DRGLAAIRARGEYLRIEQRYADY"
     gene            complement(1067..1789)
                     /locus_tag="VLF16_01345"
     CDS             complement(1067..1789)
                     /locus_tag="VLF16_01345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016851889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HSX69548.1"
                     /translation="MPEAERLSKRLIQQIACSRREAELYIEGGWVTVDGQVIEEPQHP
                     VTGEQIALLPGAKAETQPPITLLLHKPAGLGCGLGANSTQQLLSHPHRWTEDPSGIRP
                     LNRHLRRLELLTPLETDASGLLVFSQSHAVQRLFKEKGAELEQEYLVEVAGQLDDKGL
                     KRLAFGLSYKGVTLPPCKVSWQSETRLRFAIKAVQPGQLRFMCESVGLQVVGMRRLRF
                     GRTGLAKLPVGQWRYLGLNEKF"
BASE COUNT          284 a          622 c          627 g          312 t
ORIGIN      
        1 ccgccgatgg ccggcagcgg cggcagcatg ccgtattcgc cggtgagggt gagcacgtcg
       61 gacgggttga tcggcgcggc cagcaccttg atcagcgcct ggcccgcggc cagcggcggc
      121 agctccagct ggaccgcttc gatcacgtcc tgcgggacct tgccgcgttg ttggtattcg
      181 gctttgagca tggcagttct ccatcggctg agagcgctga gtctagacgc aagaggctgc
      241 tgcgggatga atcgtcgcgc atatccgcga gtgatggcgc cgcgcgctgc gcagcgccta
      301 tgctagaccc atcgcacagg ggaaagcgca tgctgctacg cgtctggccg tggttgtgga
      361 tactgctggc gcctgccgta gtggccgagc cgctgcgcat cgggttcggc acgcacaagc
      421 cgccctacgt gttcgaggac gaggaccgcg gcatcgagta cgagatcgtc accgccgccg
      481 tgcaggccgc cggctacgag atggacgcgc gctacgcgcc gatggagcgc ctgcacctgg
      541 ccctggagcg cggcgacctg gatggcatcg ccaccaccaa cgcctacagc ggcatccagg
      601 cgcactattc ggagccctac atctactgcc agaacgttgc ctttgccctg acatcgcggg
      661 gctatcgcat cgaacgcatc gccgacctgc agcggtattc catcagcacc ttccagcgcg
      721 cgcggcactt gctggggccg gaattccagg cgatggccga ggccaacccg cattaccgcg
      781 aggaagccca gcagatcaat cgcaatcgtc tgttgtacag cgggcgcatc gacgtggcgg
      841 tgggcgatcc gcgcatcctg cgctacttca accgcgaggt tgcccggcag gtcgacacga
      901 cgcagccggt cacccagtac ctgctgtttc caccgagtgc ctacagcgtc ggtttccgcc
      961 tgcgcgagca gcgcgagcgc ttcgaccgcg gcctggcggc gatccgggcc agaggcgagt
     1021 acctgcggat cgagcagcgt tacgccgatt attgagaggc gcggcctcag aacttctcgt
     1081 tgagccccag atagcgccac tgcccgaccg gcagcttggc caggccggtg cggccgaagc
     1141 gcaggcggcg catgcccact acctgcaggc ccacgctctc gcacatgaag cgcagctgcc
     1201 ccggctgtac cgccttgatg gcgaagcgca ggcgcgtctc gctctgccag ctgaccttgc
     1261 acggcggcag ggtcacgccc ttgtagctga ggccgaaggc caggcgcttg agccccttgt
     1321 cgtccaactg gccggcgacc tccaccaggt attcctgctc cagctccgcg cccttttcct
     1381 tgaacaggcg ctgcaccgcg tggctctggc tgaacaccag caggccgctg gcgtcggtct
     1441 ccagcggcgt gagcagttcc aggcggcgca ggtggcggtt cagcgggcgg atgccgctgg
     1501 ggtcttcggt ccagcgatgg gggtggctga gcagctgctg ggtggagttg gcgcccaggc
     1561 cgcagcccag gcctgccggc ttgtgcagca gcagggtgat cggcggctgc gtctcggcct
     1621 tggccccggg cagcagggcg atctgctcgc ccgtcaccgg gtgctgcggc tcctcgatca
     1681 cctggccgtc cacggtgacc cagcccccct cgatgtacag ctcggcctcg cggcgcgaac
     1741 aggcgatttg ctggatcagg cgtttggaca ggcgttcggc ttcgggcatg gcggtcgtgt
     1801 cacatcagga aatgaaaggc attgtaccgg gcctggggcc atcgc
//
LOCUS       DATIHC010000080         2264 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35343, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000080 DATIHC010000000
VERSION     DATIHC010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2264
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35343"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..654
                     /locus_tag="VLF16_01350"
     CDS             <1..654
                     /locus_tag="VLF16_01350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013974445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HSX69549.1"
                     /translation="RERLELLLQELQTKVDENPQLQKFKDQILFEITQDGLRIQIMDA
                     ENRPMFDLGSARLQPYFEDILLILAETISAVPNKISVSGHTDAKPFAGSGDFGNWELS
                     ASRANAARRALVAGGYSEGNVARVVGYASSALFDRNDPLNPVNRRIDIIVLTKKAQRA
                     IEGEQDGDAAAEPPIPSEAMAPGQAPAGTDDPLQPEELRERLNIFEDGALQFDEPQE"
     gene            complement(696..1727)
                     /gene="rsgA"
                     /locus_tag="VLF16_01355"
     CDS             complement(696..1727)
                     /gene="rsgA"
                     /locus_tag="VLF16_01355"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="small ribosomal subunit biogenesis GTPase RsgA"
                     /protein_id="HSX69550.1"
                     /translation="MAKRQLTRRQSWRIEKVQEERATRAAKRESRLLEELEGGDLGPE
                     QTGLVIAHFGVQVEVEALEGELLGQTQRCHLRANLPALVTGDRVVWRAGNQGHGVIVA
                     QLPRNSELCRPDMRGQLKPVAANVDRIVIVFAPLPHPHANLIDRYLIAAEHAGIRPLL
                     LLNKADLVDEENSAHLENLLSTYRHLGYELQEVSARQGGGMELLQQRLDGHVSVFVGQ
                     SGVGKSSLVNSLLPGVDTRVGELSEVTGKGTHTTTTARLFHFPGGGELIDSPGIREFG
                     LGHVSRDDVEAGFIEFRDLLGTCRFRDCKHDREPGCALLQALEDGRIQPQRMASYRHI
                     LASLPEPEY"
     gene            1815..1994
                     /locus_tag="VLF16_01360"
     CDS             1815..1994
                     /locus_tag="VLF16_01360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69551.1"
                     /translation="MLNTLRRRYPAVLALLAQLLALAALAVAVLAAARMGDWRPTLWQ
                     AALGQGGLAAALGHW"
     gene            2013..>2264
                     /locus_tag="VLF16_01365"
     CDS             2013..>2264
                     /locus_tag="VLF16_01365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSX69552.1"
                     /translation="MPLNLAFVPGLLALQSREWPAWWFLAAFLLLLLLNWNSFRERVP
                     LYLSGARTRQRLSESLAGLPADFRFVDLGCGLGSALVQLA"
BASE COUNT          335 a          751 c          798 g          380 t
ORIGIN      
        1 cgcgagcgcc tggaattgct gctgcaggaa ttgcagacca aggtcgacga gaacccgcag
       61 ctgcagaaat tcaaggacca gatcctcttc gagatcaccc aggacggcct gcgcatccag
      121 atcatggacg ccgagaaccg gcccatgttc gacctcggca gcgcgcgttt gcagccgtac
      181 ttcgaggaca tcctgctgat cctcgccgaa accatcagcg cggtgccgaa caagatcagc
      241 gtcagtggcc ataccgacgc caagccgttc gccggctccg gcgatttcgg caactgggag
      301 ctgtcggcca gccgcgccaa cgccgcgcgc cgcgccctgg tggccggtgg gtattcggaa
      361 ggcaacgtgg cgcgggtggt gggttatgcc tcctcggcgc tgttcgaccg caacgacccg
      421 ctgaatccgg tgaaccggcg catcgacatc atcgtgctga ccaagaaggc gcagcgcgcc
      481 atcgaaggcg agcaggacgg cgatgcggcg gccgagccgc cgatccccag cgaggccatg
      541 gcgcccggtc aggcgccggc gggcacggat gatccgctgc aacccgagga gctgcgcgag
      601 cgcctgaaca tcttcgagga tggggccctg cagttcgacg aaccccagga atgaaaacga
      661 agaggccgcg atgatcgcgg cctctttgtt tctgctcagt actcgggttc gggcaggctg
      721 gcgaggatgt gccggtagct ggccatccgc tgcggctgga tacggccatc ttcgagcgcc
      781 tggagcagcg cgcagccggg ctcgcggtcg tgcttgcagt cacggaagcg acaggtgccg
      841 agcaggtcgc ggaattcgat gaagccagct tccacgtcgt cgcgactgac gtggcccagg
      901 ccgaattcgc gaatgccggg tgagtcgatc aactcgccgc cgccggggaa gtggaacagc
      961 cgcgccgtgg tggtggtatg ggtgcccttg ccggtgactt ccgacagctc gccgacgcgg
     1021 gtgtccacac ccggcagcag gctgttgacc agcgacgact tgcccacgcc cgactggccg
     1081 acgaacacgc tgacgtgccc gtccaggcgc tgctgcagca actccatgcc gccgccctgg
     1141 cgcgccgaga cttcctgcag ctcgtaaccg agatggcggt aggtgctcag caggttttcc
     1201 agatgcgccg agttctcttc gtcgaccagg tcggccttgt tcagcagcag cagcgggcgg
     1261 ataccggcgt gttcggcggc gatcaggtaa cggtcgatca ggttggcgtg cggatgcggc
     1321 agcggggcga agacgatgac gatccggtcg acgtttgccg ccaccggctt gagctggccg
     1381 cgcatgtccg ggcggcacag ctcggaattg cgcggcagct gggcgacgat caccccgtgg
     1441 ccctggttgc cggcgcgcca taccacgcgg tcgccggtga ccagcgccgg caggttggcg
     1501 cgcaggtggc agcgttgcgt ctggccgagc agctcgcctt ccagggcctc gacctcgacc
     1561 tgcacgccga agtgagcgat gaccaggccg gtctgctccg ggcccaggtc gccgccttcc
     1621 agctcctcga gcaggcgcga ctcgcgcttg gccgcgcggg tggcgcgctc ttcctggact
     1681 ttttcgatgc gccagctctg gcggcgggtc agttggcgtt tggccatggc ctttccggtg
     1741 gaatgagaaa cggcggcgag tttagcacgg gccccatctg gttctggcgg ctgcctgctg
     1801 gtacaacggg cgccatgcta aacaccctgc gccgccgcta tcccgccgtt ctcgccctgc
     1861 tggcccagct cctggccctg gccgcgttgg ccgtggccgt gctcgccgcg gcgcgcatgg
     1921 gcgattggcg gccgactctg tggcaggcgg cgctggggca gggcgggctg gccgcggcgc
     1981 tcggtcactg gtagggcctg cggcgctggt ggttgccact gaacctggcg ttcgtgcccg
     2041 ggctcctggc gctgcaaagc cgcgaatggc ctgcctggtg gttcctcgcc gcgttcctgt
     2101 tgctgctgtt gctcaactgg aacagcttcc gcgagcgtgt gccgctgtac ctgagcggcg
     2161 cgcgcacccg ccagcggctc agcgagagcc tggccgggct gccggcggac ttccgcttcg
     2221 tcgacctggg ctgcggcttg ggcagcgccc tggtgcagct ggcg
//
LOCUS       DATIHC010000081         1689 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11857, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000081 DATIHC010000000
VERSION     DATIHC010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1689
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11857"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..313)
                     /locus_tag="VLF16_01370"
     CDS             complement(<1..313)
                     /locus_tag="VLF16_01370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019692134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015079 - potassium ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KUP/HAK/KT family potassium transporter"
                     /protein_id="HSX69553.1"
                     /translation="MSEVVADHAKSSHASSAIGLLVGAVGVVYGDIGTSPLYTLKEVF
                     NGGYGVQVNHEGVLGVLSLIFWSLIWVVSLKYVLFVLRADNQGEGGVMALTALASRAA
                     SA"
     gene            517..>1689
                     /gene="rimO"
                     /locus_tag="VLF16_01375"
     CDS             517..>1689
                     /gene="rimO"
                     /locus_tag="VLF16_01375"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008172 - S-methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0018339 -
                     peptidyl-L-beta-methylthioaspartic acid biosynthetic
                     process from peptidyl-aspartic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HSX69554.1"
                     /translation="MSTATPKVGFVSLGCPKATVDSERILTQLRLEGYEIVPTYEDAD
                     VVVVNTCGFIDSAKAESLDTIGEAIAENGKVIVTGCMGVSENAIRDVHPSVLAVTGPQ
                     QYEQVVNAVHEVIPPKADHNPYVDLVPPQGIKLTPRHYAYLKISEGCNHSCAFCIIPS
                     MRGRLVSRPVGDVLSEAQRLVKAGVKEILVISQDTSAYGVDLKYKTDFWEGQPVKTRM
                     KELCEALSSMGVWVRLHYVYPYPNVDDVIPLMAAGKLLPYLDIPFQHASPKVLKAMKR
                     PAFEDKTLARIKSWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQ
                     YSPVDGAPANDLGLEPVPDDVKQDRWERFMAHQQAISAARLQRKIGTEIEVLVDEVD"
BASE COUNT          320 a          589 c          526 g          254 t
ORIGIN      
        1 gcgcggaggc ggcgcggctg gccagcgcag tgagcgccat caccccgccc tcgccctggt
       61 tgtccgcgcg cagcacgaac agcacgtact tgagcgacac cacccagatc agcgaccaga
      121 agatcagcga cagcacgccg agcacgcctt cgtggttgac ctgcacgccg tagccgccgt
      181 tgaacacctc cttgagggtg tacagcgggc tggtgccgat gtcgccgtag accacgccca
      241 ccgcgccgac cagcaggccg atggcggacg aggcatggga ggatttggcg tgatcggcga
      301 cgacttcgct catgaaggac tccatccgga cgagtggtgc gcatcctgcc accgtcgcgc
      361 ggcccgagcc agggccatcg cagcaccgca caggccgctc ggcacagctt agatgagttg
      421 cccgcccagg ctgttcaagt ccgcgacctg ccgctagaat tgcgcacttt ttgatcagag
      481 gcgccctccc gagcgcccgt ttgaggttag ccaccgatgt ccaccgccac accgaaagtc
      541 ggattcgtca gcctgggttg cccgaaggcc accgtcgact ccgaacgcat cctcacccag
      601 ctgcgcctgg agggttacga gatcgtgccc acctacgagg acgccgacgt ggtggtggtc
      661 aacacctgcg gcttcatcga cagcgccaag gccgagtcgc tggacaccat cggcgaggcc
      721 atcgccgaga acggcaaggt gatcgtcacc ggctgcatgg gcgtgtccga gaacgccatc
      781 cgtgacgtgc acccgagcgt gctggccgtc accggcccgc agcagtacga gcaggtggtc
      841 aacgccgtgc acgaggtgat cccgcccaag gccgatcaca acccctacgt cgacctggta
      901 ccgccgcaag gcatcaagct caccccgcgc cactacgcct atctgaagat ttccgagggc
      961 tgcaaccaca gctgcgcctt ctgcatcatt ccgtccatgc gcggcaggct ggtcagccgc
     1021 ccggtgggcg acgtgctgtc cgaggcccag cgcctggtca aggccggggt caaggagatc
     1081 ctggtgatca gccaggacac cagcgcctac ggcgtcgacc tcaagtacaa gaccgatttc
     1141 tgggaaggcc agccggtcaa gacgcgcatg aaggagctgt gcgaagcgct ctccagcatg
     1201 ggcgtatggg tgcgcctgca ctacgtctac ccgtacccga acgtggacga cgtgatcccg
     1261 ctgatggccg ccggcaagct gctgccgtac ctggacatcc ccttccagca cgccagcccg
     1321 aaagtgctca aggccatgaa gcgcccggcc ttcgaggaca agaccctggc gcgcatcaag
     1381 tcctggcgcg agatctgccc ggaactgacc attcgctcca ccttcatcgt cggcttcccc
     1441 ggcgagaccg aggaagactt ccagtacctg ctggactggc tgaccgaagc ccagctcgac
     1501 cgcgtcggct gcttccagta cagcccggtg gacggcgccc cggccaacga cctgggcctg
     1561 gagccggtgc cggacgacgt caagcaggac cgttgggagc gcttcatggc gcatcagcag
     1621 gccatcagcg ccgcgcgcct gcagcgcaag atcggtaccg agatcgaagt gctggtcgac
     1681 gaagtcgac
//
LOCUS       DATIHC010000082         4244 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18869, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000082 DATIHC010000000
VERSION     DATIHC010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4244
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18869"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..180
                     /locus_tag="VLF16_01380"
     CDS             <1..180
                     /locus_tag="VLF16_01380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HSX69555.1"
                     /translation="QFTPPLADHVEIVRLGLECSPCFDRTCRFGHYNCLRELKPRPVL
                     EALDRLVGDPVEVAG"
     gene            177..1181
                     /gene="waaC"
                     /locus_tag="VLF16_01385"
     CDS             177..1181
                     /gene="waaC"
                     /locus_tag="VLF16_01385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010488478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HSX69556.1"
                     /translation="MRVLLIKTSSLGDVIHTLPALTDAARAIPGIQFDWVVEEGFAEI
                     PAWHPAVAQVIPVAIRRWRKHLLQTWKSGEWKRFKQRLGEVDYDLVIDAQGLFKSAVL
                     TRYSKAPVAGLDRDSAREPIACRFYDRLYPVPGEQHALERTRQLFAQALGYELPQQIG
                     DYGLDRAAMADGAAQPYLLFLHGTTWASKHWPEAQWRALAERMAAQGWAICLPWGNET
                     ERERAQRIVAGIDNAAVLPRLNLAGVAKVIAGATACVAVDTGLGHLAAALDVPTISLY
                     GPTLPGKVGAYGRGQVHLCASGPGAGEGDRHKPCFDGLDARRVGDELNAMLLAQQEAV
                     "
     gene            1181..2302
                     /locus_tag="VLF16_01390"
     CDS             1181..2302
                     /locus_tag="VLF16_01390"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HSX69557.1"
                     /translation="MQLAFVLYKYFPFGGLQRDFMRIALECQARGHAIRVYTPIWEGE
                     VPAGFDVRVAPIKAFFNHHRNERFSAWLAADLARDPVDRVVGFNKMPGLDVYYAADGC
                     YEDKAQTLRAPIYKRWGRYKHFADYERAVFAPESKTEILMISEVQQPLFIKHYKTPEA
                     RFHLLPPGIAADRRAPANAAEIRAEFRREFKLADDDLLLVQIGSGFKTKGLDRSLKAL
                     AALPRELKKRTRLIAIGQDDPKPFLLQVKALGLSDQVQILKGRSDIPRFLLGADLLIH
                     PAYNENTGTVLLEAVVSGLPVLVSEVCGYAHYIAEADAGRVVPAPFAQDELNRLLAEM
                     LGDDAARAKWGANGLAFADTADLYSMPQRAADVILAERA"
     gene            2299..3114
                     /gene="rfaP"
                     /locus_tag="VLF16_01395"
     CDS             2299..3114
                     /gene="rfaP"
                     /locus_tag="VLF16_01395"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014851327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptose(I) kinase RfaP"
                     /protein_id="HSX69558.1"
                     /translation="MKLILAEPFKSLWAGRDAFAAVEALQGKVYRELEGRRTLRTEVD
                     GRGYFVKIHRGIGWGEIAKNLLTAKAPVLGAGQEWRAIQRLTEAGVPTMTAVAYGERG
                     GNPAAQHSFIVTEELAPTTDLEQLTLSWAEQPPAPRLKRALIAEVAKMTGTMHRAGVN
                     HRDCYICHFLVHTDRPISADDFRLSLIDLHRAQVRAATPLRWRNKDLAALYFSALDIG
                     LTRRDKLRFLRAYFQRPLRDILRDEAALLSWLERKGERLRERYLRKYAPGASQ"
     gene            3111..3848
                     /locus_tag="VLF16_01400"
     CDS             3111..3848
                     /locus_tag="VLF16_01400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010221386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide kinase InaA family protein"
                     /protein_id="HSX69559.1"
                     /translation="MSGWRLTEEATDALARELPGLEQVFALEGEQVTRDPLSEVILIE
                     RDGVRYYVKRYWGAGKGLRRYIGRPRVKAEWQNLRHFARWGIPTAPIVGYGLERKAGA
                     FVRGALITRELAQTRDLAVMARSADERLRDAGWVDGVSRQLARATRALHDHHFAHNDL
                     KWRNLLVNQQGELFLIDCPTGAFWWGAFLRYRIVKDLACLDKVASKVLTRSQRLRFYR
                     QYSGRERLDAADKRQVRQILKFFEGRE"
     gene            3845..>4244
                     /locus_tag="VLF16_01405"
     CDS             3845..>4244
                     /locus_tag="VLF16_01405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003285225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide kinase InaA family protein"
                     /protein_id="HSX69560.1"
                     /translation="MSDFIAAEDRALLERHGLASYDALWALELEAVDEPNCERGGWSS
                     VYRLDLGEAAYYLKRQSNHLARSILRPQGEPTFAREFRNIHRYAALGIPALKAAFFGE
                     RRVPGERRAVLLTRALDGWQDLDQWLQDWPR"
BASE COUNT          657 a         1463 c         1460 g          664 t
ORIGIN      
        1 cagttcaccc cgccgctggc ggaccatgtg gaaatcgtgc gcctgggcct ggagtgcagt
       61 ccctgcttcg accgcacctg ccgtttcggc cactacaact gcctgcgcga gctcaagccg
      121 cgtccggtgc tcgaggcgct ggaccgcctg gtcggcgatc ctgtcgaggt cgccggatga
      181 gggtgttgct gatcaagacg tcgtccctcg gcgacgtgat ccacaccctg ccggcgctca
      241 ccgacgcggc gcgggccatt cccggcatcc agttcgactg ggtggtggag gaaggcttcg
      301 ccgagatccc ggcctggcac ccggccgtgg cccaggtgat cccggtggcc atccgccgct
      361 ggcgcaagca cctgctgcag acctggaaaa gcggcgagtg gaagcgtttc aagcagcgcc
      421 tgggcgaggt cgactatgac ctggtgatcg acgcgcaggg cttgttcaag agcgccgtgc
      481 tgacccgcta ttccaaggcg ccggtggccg gcctggaccg cgactcggca cgcgagccga
      541 tcgcctgccg cttctacgat cgtctgtacc cggtgcccgg ggagcagcat gcgctggagc
      601 gcactcgcca gctgttcgcc caggccctgg gttacgagct gccgcagcag atcggcgact
      661 acggcctgga tcgcgcggcc atggccgatg gcgccgcgca gccgtatctg ctgttcctgc
      721 atggcaccac ctgggccagc aagcactggc ccgaggccca gtggcgtgcc ctggccgagc
      781 gcatggccgc gcagggctgg gccatctgcc tgccgtgggg caacgagacg gagcgtgagc
      841 gcgcccagcg catcgtcgct ggtatcgaca atgctgccgt gctgcccagg ctgaacctgg
      901 ccggcgtggc caaggtgatc gccggcgcca ccgcctgcgt ggccgtggac actggcctcg
      961 gccacctggc cgcggcgctg gatgtgccga ccatctccct ctacggcccg accctgccgg
     1021 gaaaggtcgg cgcctacggt cgcggccagg tgcacctgtg cgccagcggc ccgggagccg
     1081 gtgagggcga tcggcacaag ccctgtttcg acggcctcga cgcccggcgc gtgggtgacg
     1141 agctgaacgc catgctgctg gcgcagcagg aggcggtgtg atgcagctgg ccttcgtcct
     1201 ctacaagtac ttcccgttcg gcggcctgca gcgcgacttc atgcgcatcg ccctggaatg
     1261 ccaggcgcgc ggccacgcca tccgcgtcta tacaccgatc tgggagggcg aggtgcccgc
     1321 cggcttcgac gtgcgggtgg cgccgatcaa ggccttcttc aaccaccatc gcaacgagcg
     1381 cttcagcgcc tggctggcgg cggacctggc gcgcgacccg gtggaccggg tcgtgggctt
     1441 caacaagatg ccgggcctcg acgtctacta cgccgccgac ggctgctacg aagacaaggc
     1501 gcagaccttg cgcgcgccga tctacaagcg ctggggccgc tacaagcact tcgccgacta
     1561 cgagcgggcg gtgttcgctc ccgagtcgaa gaccgagatc ctgatgatct ccgaggtgca
     1621 gcagccgctg ttcatcaagc actacaaaac gcccgaggcg cgcttccacc tgctgccgcc
     1681 gggtatcgcc gccgaccgcc gcgccccggc caatgctgcc gagatccgcg ccgagttccg
     1741 ccgcgagttc aagctggccg acgacgacct gctgctggtg cagatcggct ccggcttcaa
     1801 gaccaagggt ctggaccgca gcctcaaggc cctggccgcg ctgccgcggg agctgaagaa
     1861 acgcacgcgg ctgatcgcca tcggccagga cgatcccaag cccttcctgc tgcaggtcaa
     1921 ggcgctgggg ctcagcgatc aggtgcagat cctcaagggg cgcagcgaca ttccgcgctt
     1981 cctgctcggc gccgacctgc tgattcaccc ggcctacaac gaaaacaccg gcaccgtgct
     2041 gctggaggcc gtggtctccg gcctgccggt gctggtcagc gaggtctgcg gctacgccca
     2101 ctacatcgcc gaggccgacg ccggccgcgt ggtgccggcg ccgttcgcgc aggacgagct
     2161 caatcgcctg ctggccgaga tgctcggcga cgacgcggcg agggcgaagt ggggcgccaa
     2221 cggtctggcc ttcgccgata ccgccgacct gtattccatg ccgcagcgcg cggccgacgt
     2281 gatcctggcg gaacgcgcat gaagctgatc ctcgccgagc cattcaagtc gctgtgggcc
     2341 gggcgtgatg ccttcgccgc cgtggaagcc ctgcagggca aggtctaccg cgagctggaa
     2401 gggcgccgca cgctgcgcac cgaggtcgac gggcgtggct actttgtcaa gatccaccgc
     2461 ggcatcggct ggggcgagat cgccaagaac ctgctcaccg ccaaggcgcc ggtgctcggc
     2521 gccggccagg aatggcgcgc gatccagcgt ttgaccgagg ccggcgtgcc aaccatgacc
     2581 gccgtggcct atggcgagcg cggcggcaac ccggcggcgc agcattcgtt catcgtcacc
     2641 gaggaactgg cgccgaccac cgacctcgag caactgaccc tgagctgggc cgagcaaccg
     2701 cctgcgccgc gcctcaagcg cgcgctgatc gccgaggtgg cgaagatgac cggcaccatg
     2761 caccgcgccg gggtcaatca tcgcgactgc tacatctgcc acttcctcgt gcacaccgac
     2821 cggccgatca gcgccgacga cttccgcctg tcgctgatcg acctgcaccg cgcccaggtg
     2881 cgcgctgcca cgcccctgcg ctggcgcaac aaggacctgg ccgccctgta tttctcggcc
     2941 ctcgacattg gcctgacccg ccgcgacaag ctgcgcttcc tgcgcgccta tttccagcgg
     3001 ccgctgcgcg acatcctgcg cgacgaggcg gcgctgctga gttggctgga gcgcaagggc
     3061 gagcgcctgc gcgagcgcta cctgcgcaag tatgcgccgg gggcttcgca gtgagtggct
     3121 ggcgtctgac cgaggaggcg actgacgcgc tcgctcggga gctccccggt ctcgagcaag
     3181 tgttcgcctt ggaaggcgag caggtgacgc gcgacccgct gtccgaggtg atcctgatcg
     3241 agcgcgacgg cgtgcgttac tacgtcaagc gctactgggg cgccggcaag gggctgcgcc
     3301 gctacatcgg tcgcccgcgg gtgaaggccg agtggcagaa cctcaggcat ttcgcgcggt
     3361 ggggcattcc taccgcgccc atcgtcggtt acgggctgga acgcaaggcc ggcgcgttcg
     3421 tgcgcggtgc gctgatcacg cgtgagctgg cgcagacacg cgacctggcg gtgatggcgc
     3481 gaagcgctga cgagcggctg cgcgatgccg gttgggtgga cggtgtcagt cgacagctgg
     3541 ccagggcgac ccgagccctg cacgaccatc acttcgccca taacgacctg aagtggcgca
     3601 acctgctggt caaccagcag ggcgagctgt ttctgatcga ctgcccgacc ggcgccttct
     3661 ggtggggggc gtttctgcgc tatcgcatcg tcaaggacct ggcctgcctg gacaaggtgg
     3721 ccagcaaggt gctgacgcgc agccagcgcc tgcgcttcta tcggcagtac agcggtcgcg
     3781 agcgtctgga cgccgccgac aagcgccagg tcaggcagat tctgaagttc ttcgagggca
     3841 gggaatgagc gatttcatcg ccgctgagga tcgggcattg ctcgagcgcc atggattggc
     3901 cagctacgac gccctctggg cgctcgagct ggaggcggtg gacgaaccca attgcgagcg
     3961 cggcggctgg agcagcgtgt atcggctgga cctgggcgag gccgcctact acctcaaacg
     4021 gcagagcaat cacctggccc gcagcattct acggccgcag ggtgagccga ccttcgcccg
     4081 ggagtttcgc aatatccacc gctacgcggc gctgggcatt cccgctctga aagccgcctt
     4141 cttcggcgag cggcgtgtgc ccggcgagcg tcgggccgtt ctgctgaccc gtgcgctcga
     4201 cggctggcag gacctcgacc agtggctgca ggactggccg cgtg
//
LOCUS       DATIHC010000083         2517 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_136, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000083 DATIHC010000000
VERSION     DATIHC010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2517
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..523)
                     /locus_tag="VLF16_01410"
     CDS             complement(<1..523)
                     /locus_tag="VLF16_01410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69561.1"
                     /translation="MNEPEWLRDLHLPDQAGHAHLSAASALVRVGERLFVVADDELHL
                     GLFGLDDPGPGRVLRLFEGELPAEKNARKATKPDLEALARLPAMAGHAEGALLALGSG
                     STDNRQRGVLLGLEEGAQPRILDLAPLYRPLRQHFADLNIEGGFLLGDEFILLQRGNQ
                     GLAANAAVRYAWPA"
     gene            678..1181
                     /locus_tag="VLF16_01415"
     CDS             678..1181
                     /locus_tag="VLF16_01415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HSX69562.1"
                     /translation="MRWLLALLCISLAGLSQATPAPIPSGKSVDKVLVVKSERKLHLM
                     GRGEVLKSYRISLGKIPTGAKVREGDLRTPEGFYWIDWRKTSEKYNLSMHISYPNARD
                     AANARKKGMPAGGMIMIHGTPLDDEYPEWFFNTLDWTEGCIAMRNTDMREVWSLVKDG
                     TLIEIRP"
     gene            1382..1831
                     /locus_tag="VLF16_01420"
     CDS             1382..1831
                     /locus_tag="VLF16_01420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012018877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HSX69563.1"
                     /translation="MKQPQSCAALQLDNQLCFALHSTSLLMTKAYKPMLQSIGLTYPQ
                     YLAMMVLWEGDGITVGDISARLLTDPGSLTPLLKRLEAEGMITRTRSSADERVVELRL
                     TDKGRQLQQEAERFPACILEASGQTPEQIQALKEQIVALRDQLQKSL"
     gene            1988..2413
                     /locus_tag="VLF16_01425"
     CDS             1988..2413
                     /locus_tag="VLF16_01425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organic hydroperoxide resistance protein"
                     /protein_id="HSX69564.1"
                     /translation="MQTIKALYTATATATGGRDGRAVSSDGLLDVKLTTPRELGGAGG
                     EATNPEQLFAAGYSACFIGALKFVASQKKQAFPADASITGKVGIGQIPGGFGLEVELN
                     ISLPGIDRAVAEELVAAAHQVCPYSNATRGNIEVRLVLV"
BASE COUNT          492 a          877 c          738 g          410 t
ORIGIN      
        1 aggcgggcca ggcgtagcgt acggcggcat tggccgccag cccctggtta ccgcgctgca
       61 gcaggatgaa ctcgtcaccc agcaggaagc cgccctcgat attgaggtcg gcgaagtgct
      121 ggcgcagcgg ccggtacaac ggcgccaggt cgaggattcg cggctgcgcg ccctcctcca
      181 ggcccagcaa cacgccacgc tggcggttat cggtggagcc ggagcccagc gccaacagcg
      241 cgccttcggc atgaccggcc atcgccggca gccgggccag cgcctcgagg tcgggcttgg
      301 tcgccttgcg ggcgttcttt tcagccggca actcaccctc gaacagacgc aggacgcgcc
      361 cggggccggg gtcgtcgagg ccgaacagcc ccaggtgcag ctcatcgtcg gcgaccacga
      421 acagccgctc gcccactcgc accagggcgc tggcggcgct caggtgcgca tggccggctt
      481 ggtcgggcag atgcagatca cgcagccatt cgggttcgtt catcgtcctt tccttgcgtc
      541 tgagtcgagg ggccgatcct aaccagcaca ccgtccgact ggcgaggatt gaagatcatc
      601 cgcggcatag gcagactctc gcgctataac aacctgatcc atcagggcca acactgaaac
      661 acccccggaa tgtcgtaatg cgctggctgc tcgccctact ctgcatatcc cttgccggcc
      721 tgtcccaggc cacgccggcc cccatcccca gcggcaagtc ggtagacaag gtgctggtcg
      781 tcaaatccga gcgcaagctg cacctgatgg gtcgcggcga ggtgctcaag tcgtatcgca
      841 tctcgctggg caagatcccg acgggcgcca aggtgcgcga gggcgacctg cgcacgccgg
      901 agggcttcta ctggatcgac tggcgcaaga ccagcgagaa gtacaacctg tccatgcaca
      961 tctcctaccc caacgcccgc gacgccgcca atgcgcgcaa gaagggcatg cccgccggcg
     1021 gcatgatcat gattcacggc acgccgctgg acgatgaata ccccgagtgg ttcttcaaca
     1081 ccctggactg gactgagggc tgcatcgcca tgcgcaacac cgacatgcgc gaggtgtgga
     1141 gcctggtgaa ggacggcacg ctgatcgaga ttcgcccctg acgattgcgt cccgtccgcc
     1201 aggcgtcgtg ggaagcagca tcccgcaggc ttggctccag ctcgcaaggt catggacagg
     1261 gaccaaccgc tatttgaacg aggcgccgca aggcgccttt ttcatctccg ctgtacaaaa
     1321 tttgcccata tttaatttgc gcgataaatt gttgcgcaga taacgagcgg aggcttccgt
     1381 catgaaacag ccgcaatcct gcgccgccct gcagctggac aaccagttgt gcttcgccct
     1441 gcactccacc tcgctgctga tgaccaaggc ctacaagcct atgctgcaga gcatcggcct
     1501 gacctatccg cagtacctgg cgatgatggt gctgtgggaa ggcgacggca tcaccgtcgg
     1561 cgatatcagc gcccgcctgc tcaccgatcc cggctcgctg accccgctgc tcaagcgtct
     1621 cgaggccgag ggcatgatca cccgtacccg cagcagcgcc gatgaacgcg tcgtggagct
     1681 gcgcctgacc gacaagggcc gtcagcttca gcaggaggcc gaacgcttcc ccgcctgcat
     1741 cctcgaggcc agcgggcaga cgccggagca gatccaggcc ctcaaggagc agatcgtcgc
     1801 cctgcgcgat cagctgcaga agtcgctctg acgcccgctc cgcctcgctt attccagaaa
     1861 cagatctagc tagatcgaat tcatttaaaa attaacttgc gcgcaaaatt aaacgccgct
     1921 aactttcact ccacgcactt acttagcgcg caaaacttta gacagcaaac aaactggaga
     1981 caccgccatg caaaccatca aagccctcta caccgctacc gctaccgcca ccggaggccg
     2041 tgacggccgc gccgtttcct ccgacggtct tctcgacgtc aagctgacca ccccgcgtga
     2101 actgggcggc gccggcggcg aagccaccaa ccccgaacag ctgttcgccg ccggttactc
     2161 cgcctgcttc atcggcgccc tgaagttcgt cgccagccag aagaagcagg ccttcccggc
     2221 cgacgcctcg atcaccggca aggtcggcat cggccagatc cccggcggct tcggcctgga
     2281 agtggaactg aacatcagcc tgccgggcat cgaccgcgcc gtcgccgaag agctggtcgc
     2341 cgcggcccac caggtctgcc cttactccaa cgccacccgc ggcaacatcg aggtccgtct
     2401 ggtgctcgtc tgagcccagc ggaacgaaca ggagaatcgc catgaaaact cgtcaattcg
     2461 tagccggcgc cttcgccgca ctggccctga tcagcgcctc ggcgagcttc gccgccg
//
LOCUS       DATIHC010000084         2951 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11858, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000084 DATIHC010000000
VERSION     DATIHC010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2951
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11858"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..569
                     /locus_tag="VLF16_01430"
     CDS             <1..569
                     /locus_tag="VLF16_01430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003240475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HSX69565.1"
                     /translation="LHIEMQRAALERRLGQPEAAERRLRALVQRAQVQGGQLLGAFAQ
                     VQLALLLYVSGREREAQQQLLAGLEAAGGGALLPFHELLAHQPDWLRVQLQTAPDTPI
                     GEALRRCLPCEIETESTPVAAAEALSTRELAVLRLIALGCSNQEISERLFISLHTVKT
                     HARHINSKLGVERRTQAVARAKSLGLIS"
     gene            complement(562..1392)
                     /locus_tag="VLF16_01435"
     CDS             complement(562..1392)
                     /locus_tag="VLF16_01435"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HSX69566.1"
                     /translation="MHCSTPHQLTIKPRQPEFALPSPWRRHWHGGDAFKSHFFDAMSL
                     LFPDGERFFIDSVRAYRDQVTDPQQQAQIRGFIGQEAHHSREHQHYSDALRETGYDLD
                     YLERRLKKRLAFVRKHLPPKAHLAATTAVEHLTAIMADAILQNPEWLEGADPDMARLW
                     RWHALEESEHKAVAFDLYQQVCGKVWIRRRAMLQSTFFFTLDTFKGLVHMLRRDGLLW
                     NWRVWRDGLAWLWGSRGILRPLVRAYCDFYRADFHPWQHDNLQVILERRREFDPVEVS
                     "
     gene            1514..2563
                     /locus_tag="VLF16_01440"
     CDS             1514..2563
                     /locus_tag="VLF16_01440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSX69567.1"
                     /translation="MSKPLTLSSELVPVTYAEALLQLAGEYGVGREQLLGSAGFNAKL
                     LQSPTGRLSFSDFHRLAGSALLLCDEPALGLLLGLRLNASAHGILGYALLSSANLGKA
                     VHFALKYYRVLGLTFELELVDNPDSLELRASESIPLGGFGRFAAEGLFGSLFAIAEFL
                     LGEAPQGVEIGFAHRRPEHASRYHEAFGVDALFEQPWHWFRLPRHYLDRPMALANPAT
                     MQMCERQCEALLASLDVQEGLLSRLRRLLLARPGDFPNLDSAASALHTSGRSLRRHLA
                     AAGTSYQQVLDEVRKRLALQYLETTHLPLFEIALLLGFSDPSNFRRAFRKWTGKAPTD
                     YRARPVTPEEIPDDR"
     gene            2553..>2951
                     /locus_tag="VLF16_01445"
     CDS             2553..>2951
                     /locus_tag="VLF16_01445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSX69568.1"
                     /translation="MTDSPQPSLIRETFPVGPLQCNCTIIGDPVSKKAIVVDPGGDPE
                     LIMARLEKHGLKVVSIIHTHAHLDHFLASGQMKEKTGATLHLHKDDHFLWDNLEMQCQ
                     MFGVPYTPVPAPDQWLADDEALACGCGVALH"
BASE COUNT          466 a         1003 c          992 g          490 t
ORIGIN      
        1 cactacacat cgaaatgcag cgcgccgccc tggagcgtcg cctggggcag ccggaggccg
       61 ccgagcggcg cctgcgtgcg ctggtccagc gggcccaggt acagggcgga cagttgctgg
      121 gtgcgttcgc ccaggtccag ctcgccctgc tgctctatgt atcggggcgc gagcgcgagg
      181 cgcagcaaca gttgctggcc gggctggagg ctgcgggggg cggcgccttg ctgccattcc
      241 atgaactgct cgcgcaccag cccgactggc tgcgggtgca gttgcagacg gcgccggaca
      301 cgcctatcgg cgaggcgctg cgccgttgcc tgccgtgcga aatcgaaacc gaatcaacgc
      361 ccgtcgctgc ggccgaggcg ctgagcaccc gcgaactggc ggtgctgcgg ctgatcgccc
      421 tcggctgttc caatcaggag atcagcgagc ggctgttcat ctccctgcac acggtcaaga
      481 cccacgcccg gcacatcaac agcaagctag gcgtcgagcg ccgcacccag gccgtggcgc
      541 gagccaagag cctggggctg atcagctgac ttcgaccggg tcgaactcgc ggcggcgctc
      601 gaggatcacc tgcaggttgt cgtgctgcca gggatggaag tcggcgcgat agaagtcgca
      661 gtaggcccgt accagcgggc gcagaatgcc gcggctgccc cacagccagg ccaggccgtc
      721 gcgccacacg cgccagttcc acagcaggcc gtcgcggcgc agcatgtgca ccaggccctt
      781 gaaggtgtct agggtgaaga agaaggtgct ctgcagcatg gcgcgacgac ggatccacac
      841 cttgccgcag acctgctgat agaggtcgaa ggccaccgcc ttgtgctcgc tctcctccag
      901 cgcatgccag cgccacaggc gtgccatgtc cgggtcggcg ccctccagcc actccgggtt
      961 ctgcaggatg gcatcggcca tgatcgcggt caggtgctcc accgccgtgg tcgccgccag
     1021 gtgcgccttg ggcggcaggt gcttgcgcac gaaagccagg cgcttcttca gccggcgttc
     1081 caggtagtcc aggtcgtaac cggtctcgcg cagggcatcg ctgtagtgct ggtgctcgcg
     1141 gctgtggtgc gcctcctggc cgatgaaacc gcggatctgc gcctgctgct gcgggtcggt
     1201 tacctgatcg cgataagcgc gcaccgagtc gatgaagaag cgctcgccgt ccgggaacag
     1261 cagcgacatg gcatcgaaga aatgactctt gaaggcgtcg ccgccgtgcc agtgacggcg
     1321 ccacggcgag ggcagggcga attccggctg gcgcggcttg atggtcaatt ggtgcggggt
     1381 cgagcagtgc atgcggcctc ccatcttgtt gttatccatg ggccggacta tgggttgtgg
     1441 gctgtgcgtg gacaaggtta tcttcagcca tgtttcgggt catatccggc cacagcccct
     1501 ccggttcgaa cagatgagca aacccctgac cctgagttcc gagctggtcc cggtcaccta
     1561 cgccgaggcg ctgctgcagc tggccggcga gtatggcgtc gggcgcgagc agctgctggg
     1621 cagcgccggc ttcaacgcga agctgttgca gagcccgacc ggccggctgt ccttcagcga
     1681 tttccaccgg ctcgccggtt ccgcgttgct gctgtgcgat gagccggcgc tgggcctgct
     1741 gctggggctg cgcctcaacg cctcggccca cggcattctc ggttacgcgc tgctgtcgag
     1801 cgccaatctg ggcaaggccg tgcacttcgc gctgaagtac taccgggtgc tggggctgac
     1861 cttcgaactg gaactggtgg acaaccccga ttcgctcgag ctgcgcgcca gcgaatcgat
     1921 cccgctgggt ggcttcggcc gtttcgccgc cgaggggttg ttcggcagcc tgttcgccat
     1981 cgccgagttc ctgctgggcg aggcgcccca aggtgtggaa atcggcttcg cccaccggcg
     2041 gccggagcat gcttcgcgct accacgaggc cttcggcgtc gatgcgctct tcgagcagcc
     2101 ctggcactgg ttccgcttgc cgcgccatta cctggatcgc cccatggccc tggccaaccc
     2161 ggccaccatg cagatgtgcg agcggcagtg cgaagcgctg ctcgccagcc tggatgtgca
     2221 agaggggctg ctcagccgcc tgcgccgcct gctgctggct cggcccggcg acttccccaa
     2281 tctggacagc gcggccagcg ccctgcacac cagcggccgc agcctgcgtc gccacctggc
     2341 ggcggccggc accagctacc agcaggtgct cgacgaggtg cgcaagcgcc tggccctgca
     2401 gtacctggaa accacccacc tgccgctgtt cgagatcgcc ctgctgctgg gcttcagcga
     2461 cccgtccaac ttccgccgcg ccttccgcaa atggacgggc aaggcgccca ccgattatcg
     2521 tgcgcggccc gtgacgcccg aggagattcc cgatgaccga tagcccgcaa cccagcctga
     2581 tccgcgagac cttcccggta gggcctttgc agtgcaactg caccatcatc ggcgatcctg
     2641 tgagcaagaa ggccatcgtg gtggacccgg gcggcgatcc cgagctgatc atggcgcggc
     2701 tggagaagca cggcctcaag gtggtcagca tcatccacac ccatgcgcac ctggatcact
     2761 tcctcgcctc cgggcagatg aaggagaaga ccggcgcgac gctgcacctg cacaaggacg
     2821 accatttcct ctgggacaac ctggagatgc agtgccagat gttcggcgtg ccctacaccc
     2881 cggtgccggc gcccgaccag tggctggccg acgacgaggc actggcctgc ggctgcggcg
     2941 tggcgctgca c
//
LOCUS       DATIHC010000085         4010 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30572, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000085 DATIHC010000000
VERSION     DATIHC010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4010
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30572"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..782
                     /locus_tag="VLF16_01450"
     CDS             <1..782
                     /locus_tag="VLF16_01450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020294208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSX69569.1"
                     /translation="SRHTNEVLTRHANETDQAVTAITEMSSTADTVAQSATETAAFTR
                     NANDNAEQSKQVVAEASTSVLALVDEVESATARVLAMQQDARRINDVLGVIGEIAGQT
                     NLLALNAAIEAARAGEQGRGFAVVADEVRALAGRTQQSTSEINEMLAKLQQGVSSAVQ
                     AMEQTKASCQATADRTARVNVGLDDMASSVGRIHDLSAQIATAAEEQSAVTEEINQNM
                     VAIRHMVDDLVAGGQQADRSADALLASNRRLVELVSRFKVR"
     gene            1131..1628
                     /locus_tag="VLF16_01455"
     CDS             1131..1628
                     /locus_tag="VLF16_01455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017938029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HSX69570.1"
                     /translation="MTTAFKYLQGYPPHLQQQVMQMVAEGRLGDYLAKRYPNRHQVQS
                     DKALYGYTVELKQEYLRSAPAIDKVLYDNRLDLTHRALGLHTAVSRVQGGKLKAKKEI
                     RVAALFKDAAPEFLNMIVVHELAHLKEADHNKAFYQLCTHMEPDYHQLEFDLRLYLTW
                     REMAA"
     gene            1645..2076
                     /locus_tag="VLF16_01460"
     CDS             1645..2076
                     /locus_tag="VLF16_01460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69571.1"
                     /translation="MDEINPYATPRSTLRSDSAAPAGKPRGYGWYKGFSLAYGLLAIA
                     VCLLLFSVQGWRTSPLWGVIPLVLLAPLISYLLVANRLRRLSYSWLPLHLIGVCMLFG
                     LFVDRDDPQDRVKAAVFLFLATASLLSWLSSLYFHWRLSKK"
     gene            2262..3302
                     /locus_tag="VLF16_01465"
     CDS             2262..3302
                     /locus_tag="VLF16_01465"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HSX69572.1"
                     /translation="MSSAPLTPEQLSSFSPMDFLTPAYRQQLHASLKYLQRPAGTQLL
                     QKGERALAQYYLLEGKVAVDVGPGRQTLEGGSPQAHLPLNPGQVNPHGVKAITDVRLF
                     AVEHQLLERLLGWSQEAAYQVSSLGGEGMVEAHGEDDWLARLLSTPLFGRLPPSHLHA
                     LLARFEYLPARAGEAVVSYGEPGEHFYVIKQGRARISLPQAYREQPTQELASGDFFGE
                     EALVSGAVRSASVIMLEDGELARLHRDLFVELVRPSLIPRIDGPQLQRLERKHLLLDV
                     RLAVEYRLGHLPDSLNLPVANLRTHADGLERDTCYIVTPEGGIRSELAVHLLNQLGFE
                     AYLLSADGAGTA"
     gene            3308..>4010
                     /locus_tag="VLF16_01470"
     CDS             3308..>4010
                     /locus_tag="VLF16_01470"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSX69573.1"
                     /translation="MRRWWRVLLLGLCVGALTAQAQPREWLVVGTPFPQIFEQGDDGD
                     VHGLAPAILRQIAAQLGAELRFELYPWTRAQRMVELGQADILVGPYRTAEREARFAFA
                     AAPFYQDRIVFYVRGDKRITWNGDYASLGSRRLAVVRGWIYGSRFEARRADLHPVAVE
                     TVRNGLRMLDAGRIDLLASNQRNTVPLLQALGLRGRIVELAPLIDVQRGYFAFPRGPG
                     HDPLRQRFDQAFAALV"
BASE COUNT          646 a         1420 c         1343 g          601 t
ORIGIN      
        1 agtcgcgcca caccaacgag gtgctgaccc gccacgccaa cgagaccgac caggcggtga
       61 cggccattac cgagatgagc tcgaccgccg ataccgtggc gcagagtgcc accgagacgg
      121 ccgccttcac ccgcaatgcc aacgacaacg ccgagcagtc caagcaggtg gtggccgagg
      181 cctcgaccag cgtcctggcc ctggtcgacg aggtggaaag cgctaccgcg cgggtgctgg
      241 ccatgcagca ggacgcccgg cgcatcaacg acgtgctcgg ggtgatcggc gaaattgccg
      301 ggcagaccaa cctgctggcg ctcaacgcgg ccatcgaggc ggctcgcgcg ggcgagcagg
      361 gccgcggctt cgccgtggtc gccgacgagg tgcgcgccct ggccggccgc acccagcaga
      421 gcacctcgga gatcaacgag atgctggcca agctgcagca gggcgtgagc tccgccgtgc
      481 aggccatgga gcagaccaag gccagctgcc aggccaccgc cgaccgcacc gcgcgggtca
      541 acgtcggcct cgacgacatg gcctcgtcgg tcggccgcat ccacgacctc agcgcgcaga
      601 tcgccaccgc cgccgaggag cagagcgcgg tgaccgagga gatcaaccag aacatggtcg
      661 ccatccgcca catggtcgac gatctggtcg ccggcgggca gcaggcggac cgcagtgccg
      721 acgcgctgct ggcctccaat cgccgcctgg tggaactggt cagccgcttc aaggtgcgct
      781 gaccgtatgc cgcgggcggc tgcctgaggg cggccgtcgg cggtctgttc aggttctgtt
      841 cacggccgcg agggagcccg tctttgcgcg gagccaggcc gagcccgctc ccggcgggct
      901 gcggcattca ccatccatgc agatcgcgcg agacgcgagg ttcggtcgtt ctagtaacga
      961 cgctccgcgc aaaagctggc ccgtccctac gggttgcgcg caagatgacg ccctgcgttg
     1021 ttgcgcaacc gcccttgcca gcgtcccgcg cctggcgggg ccccgccagg cctggcgtga
     1081 ttttgcccag caacgcggct cgtgaacgga acgtgaacag acccatcgcc atgaccacag
     1141 ctttcaaata cctccagggc tatccaccgc acctgcagca gcaggtgatg cagatggtcg
     1201 ccgaaggtcg cctcggcgat tacctggcca agcgctaccc caaccggcat caggtgcaga
     1261 gcgacaaggc cctgtacggc tacacggtgg agctcaagca ggagtacctg cgcagcgcgc
     1321 cggccatcga taaggtgctg tacgacaacc gcctcgacct gacccaccgc gccctcggcc
     1381 tgcatacggc ggtctcgcgg gtgcagggcg gcaagctcaa ggcgaagaag gagatccgcg
     1441 tggccgcgct gttcaaggat gcggcgccgg agtttctcaa catgatcgtg gtgcacgagc
     1501 tggcgcacct gaaggaggcc gaccacaaca aggccttcta ccagctgtgc acgcacatgg
     1561 agccggacta ccaccagctg gagttcgacc tgcgcctgta cctgacctgg cgcgagatgg
     1621 ccgcctgacc taaaggagat gctcatggac gagatcaatc cctacgcgac gccgcgtagc
     1681 acactgcgca gcgactccgc ggcacctgcc ggaaagcctc ggggttatgg ctggtacaag
     1741 ggtttcagcc tggcgtacgg gctgctggcg atcgcggtct gcctgctgct cttctccgtg
     1801 caagggtggc gcacctcgcc gctctggggc gtgattccgc tggtgctgct ggcgccgctc
     1861 atcagctacc tgctggtggc caaccgtctt cggcgcctgt cctacagctg gctgcccctg
     1921 cacctgatcg gcgtctgcat gctgttcggg ctgttcgtcg acagagacga cccgcaggac
     1981 cgggtcaagg cggcggtctt cctgtttctg gcgacggcga gcctgctgtc ctggctctcc
     2041 agcctgtact tccactggcg cctgagcaag aaatgagcag ccttctgcag gccgctgcgg
     2101 ctgcgcttcg gcgccggtca tccctagctt atccacagag ccatccccgg cctctgtgca
     2161 aaaacacccg ctagaacgcg ctgttttcgg cgcgaccaaa ggactggagc gccaccgatg
     2221 gccgatgcca tagtggtcga acccgacgca ggagaagcgc catgagcagc gccccgctca
     2281 cgcccgagca actgagcagc ttcagtccga tggatttcct caccccggcc taccgccagc
     2341 agctgcacgc cagcctcaag tacctgcagc gcccggccgg cacccagctg ctgcagaagg
     2401 gcgagcgtgc gctggcccag tactacctgc tggaaggcaa ggtggcggtg gatgtcggcc
     2461 ccggccggca gaccctcgag ggcggctcgc cgcaggcgca cctgccgctc aaccctggcc
     2521 aggtcaaccc gcacggcgtc aaggcgatca ccgacgtgcg cctgttcgcc gtcgagcatc
     2581 agttgctcga acgcctgctc ggctggagcc aggaggccgc ctaccaggtc agcagcctgg
     2641 gcggcgaggg catggtcgag gcgcacggcg aggacgactg gctggcacgc ctgctcagca
     2701 cgccgctgtt cggccgtctg ccgccgtcgc acctgcacgc gctgctggcg cgcttcgagt
     2761 acctgccggc gcgcgccggc gaggcggtcg tcagctacgg cgagccgggc gagcacttct
     2821 acgtgatcaa gcagggccgc gcgcgcatca gtctgccgca ggcctatcgc gagcagccca
     2881 cccaggaact ggcgagcggt gacttcttcg gcgaggaggc gctggtcagc ggcgcggtgc
     2941 gctcggccag cgtgatcatg ctggaggacg gcgaactggc gcgtctgcac cgcgacctgt
     3001 tcgtcgaact ggtgcggccc agcctgatcc cgcgcatcga cggtccgcaa ctgcagcgcc
     3061 tggagcgcaa gcatctgttg ctcgacgtgc gcctggccgt cgaataccgc ctcggccatc
     3121 tgccggacag cctcaacctg ccggtggcca atctgcgcac ccacgccgat ggcctcgagc
     3181 gcgacacctg ctacatcgtc acgccggagg gcggcatccg cagcgagctg gccgtgcacc
     3241 tgctcaacca gctgggcttc gaggcctacc tgttgagcgc cgacggcgcc gggacggcct
     3301 gagcgccatg cgccgctggt ggcgtgtcct gctgctcggc ctctgcgtcg gcgcgctgac
     3361 cgcccaggcg cagccgcgcg aatggctggt ggtcggtacg ccgtttccgc agatattcga
     3421 gcagggcgat gacggcgacg tccacggcct ggcgccggcg atcctgcgcc agatcgccgc
     3481 gcagctcggc gccgagctgc gcttcgagct gtatccctgg acccgcgcgc agcgcatggt
     3541 ggagctgggg caggcggaca tcctggtcgg cccgtaccgc accgccgaac gcgaggcgcg
     3601 gttcgccttc gcggccgcgc ccttctacca ggaccgcatc gtcttctacg tgcgtggcga
     3661 caagcgcatc acctggaacg gcgactacgc cagcctcggc agccggcgcc tcgccgtggt
     3721 gcgcggatgg atctatggca gccggttcga ggcgcggcgc gcggacctgc atccggtggc
     3781 ggtcgagacg gtacgcaacg gcctgcgcat gctcgatgcc gggcgcatcg acctgctcgc
     3841 cagcaatcag cgcaataccg tgccgctgct gcaggcactc gggctgcgcg ggcgcatcgt
     3901 cgagctggcg ccgctgatcg acgtgcagcg cggctacttc gccttccccc ggggccccgg
     3961 tcacgacccg ctgcgccagc gcttcgacca ggccttcgcc gcgctggtcg
//
LOCUS       DATIHC010000086         1517 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37494, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000086 DATIHC010000000
VERSION     DATIHC010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37494"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1517
                     /locus_tag="VLF16_01475"
     CDS             <1..>1517
                     /locus_tag="VLF16_01475"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003283471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HSX69574.1"
                     /translation="DGILAARDGFAALLLDGVTGSGKTEVYLQLIRHCLEAGRQALVL
                     IPEINLGPQTVERFARRFNARIALLHSGVNDRERLDAWLAARDGEANIVIGTRSALFT
                     PLKNPGLIIVDEEHDASYKQQEGLRYHARDLALVRARQENLPIVLGSATPSLESLHNA
                     HAGRYALLKLTQRAGGAQQPRFLRLDVKSLPLDAGISGPLQLAIRQTLEAGQQVLVFL
                     NRRGFAPTLLCHDCGWISQCPRCDARMTLHQRHNELRCHHCGHVERPPRNCPDCQKVD
                     LRPVGAGTERAEERLALLFPQFPVLRIDRDSTARKGAMDKLFATINKGEPCILVGTQM
                     LAKGHHFPRVTLVAILDADGGLFSADFRASERMAQLTVQVAGRAGRAEEPGKVIIQSH
                     LADHPLLVQLTEQGYPAFAEQALSERRGAGLPPFAHLALLRGEAHKPGQAEAFLDDAC
                     TYAEQLCGELNLSGIELLGPVPAPMERRAGRYRAQLLLQCTSRAPLHKLLAHWLP"
BASE COUNT          236 a          584 c          483 g          214 t
ORIGIN      
        1 cgacgggatc ctggccgctc gcgacggctt cgccgcgctg ctgctcgacg gcgtcaccgg
       61 gagcggcaag accgaggtct acctgcaact gatccgacac tgcctggagg ccggccggca
      121 ggcgctggtg ctgatcccgg agatcaacct ggggccgcag acggtcgagc gcttcgcccg
      181 ccgcttcaac gcgcgcatcg ccctgctgca ttcgggggtc aacgaccgtg agcggctgga
      241 cgcctggctg gcggcccgcg acggcgaggc caatatcgtc atcggcacac ggtctgcgtt
      301 attcacgccg ctgaagaacc ccggcctgat catcgtcgac gaggaacacg acgcctccta
      361 taaacagcag gaaggtctgc gctatcacgc ccgcgacctg gccctggtgc gcgcccgcca
      421 ggagaacctg ccaatcgtgc tcggctccgc cacgccctcg ctggagagcc tgcacaacgc
      481 ccatgccggg cgctacgccc tgctcaagct gactcaacga gccggcggcg cccagcagcc
      541 gcgcttcctg cgcctggacg tgaagagcct gcccctcgac gccggcatct ccggcccgct
      601 gcaactggcg atccgccaga cactggaggc cggccagcag gtactggtgt tcctcaaccg
      661 ccgcggtttc gcccccaccc tgctgtgcca cgactgcggc tggatcagcc agtgcccgcg
      721 ctgcgacgcg cgcatgacgt tacaccagcg tcacaacgag ctgcgctgcc accactgcgg
      781 ccatgtcgag cgcccgccgc gcaactgccc ggactgccag aaggtcgacc tgcgcccggt
      841 cggcgccggc accgaacgtg ccgaggagcg cctggcgctg ctcttcccgc agttcccggt
      901 gctgcgcatc gaccgcgaca gcacggcgcg caagggcgcc atggacaagc tgttcgccac
      961 catcaacaag ggcgagccgt gcatcctggt cggcacccag atgctcgcca agggccacca
     1021 cttcccacgt gtgaccctgg tggcaattct cgacgccgac ggcggcctgt tctccgccga
     1081 cttccgcgcc agcgagcgca tggcccagct caccgtgcag gtggctggcc gtgccggccg
     1141 cgccgaggag cccggcaagg tcatcattca gagccacctg gccgaccatc cgctgctggt
     1201 gcaactcacc gagcagggct accccgcttt cgccgagcag gccctgagcg agcgccgcgg
     1261 cgccggtctg ccgcccttcg cccatctcgc cctgttgcgc ggcgaggcgc acaagccggg
     1321 gcaggccgag gccttcctcg atgacgcctg cacctacgcc gaacagctgt gcggcgaact
     1381 caacctgagc ggcatcgaac tgctcggccc ggtgccagcg ccgatggagc gccgcgccgg
     1441 ccgttatcgc gcccagctgc tgctgcagtg caccagccgc gcgccgctgc acaagctgct
     1501 ggcgcactgg ctgccga
//
LOCUS       DATIHC010000087         2452 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7187, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000087 DATIHC010000000
VERSION     DATIHC010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2452)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2452)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2452
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7187"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..616)
                     /locus_tag="VLF16_01480"
     CDS             complement(<1..616)
                     /locus_tag="VLF16_01480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014854492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HSX69575.1"
                     /translation="MTDPIDTPEAETIAAIFVRHPLWEDALALLFGTALVALGIAFYT
                     HAGLLTGGTVGIAFLAKYLAGWPFGLVFCLVNLPFYVLGIWRLGWAFTLRTGCAVLLV
                     SLLAELTPGWVAFAHLDVLYAALFGGAAMGLGLLMLFRHRASLGGVNILALFLQERFG
                     VRAGTVQMAIDAVIVLGAIFVVTPDKVALSVLGAVMLNLVLALNH"
     gene            complement(863..1375)
                     /locus_tag="VLF16_01485"
     CDS             complement(863..1375)
                     /locus_tag="VLF16_01485"
                     /EC_number="1.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004146 - dihydrofolate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HSX69576.1"
                     /translation="MNQTLPLCLIAALADNRVIGRDNQLPWHLPADLKHFKAKTLGKP
                     IIMGRKTWDSLGRPLPGRLNLVVSRQAGLQLEGAEVFPSLDAAIVRADAWAREQGVDE
                     LMLIGGAQLYEQGLARAARLYLTRVALQPKGDAWFPAFAEGDWQRSEHEEHEATDASP
                     AYRFETWQRR"
     gene            1527..>2452
                     /locus_tag="VLF16_01490"
     CDS             1527..>2452
                     /locus_tag="VLF16_01490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HSX69577.1"
                     /translation="MSIHTLRHWLVAASLTLPLFTHAADTAATARAEQAPLVIGHRGA
                     SGYVPEHTLASYALAVLQGADYVEPDLVMTRDGQLVARHDNELGLTTDVADRPEFADR
                     RRTQTVDGVSLSGWFSEDFTLAELKTLRAIERIPDIRPGNARLDGAFEVPTLQEIITL
                     VKTMERSERRRIGLYIETKHPTHFQQLGLAMEAPLLRTLARNGYKDHRDPVYIQSFEV
                     DNLRHLARHSRLRLVQLFGSGQPYDQQAQGSQLTYAKMATAEGLRRVARYAAGVGPEK
                     SYVIPRDGAGNLGQPTRFVADAHAAGLKVHPYT"
BASE COUNT          445 a          854 c          824 g          329 t
ORIGIN      
        1 ggtgattcag cgccagcacc aggttgagca tcaccgcgcc gagcaccgac agggccacct
       61 tgtccggcgt caccacaaag atcgcgccca gtacgatgac cgcgtcgatg gccatctgca
      121 ccgtgccggc acgcacgccg aagcgttcct gcaagaacag cgcgaggatg ttcaccccgc
      181 ccaggctggc ccggtggcgg aacagcatca gcaggcccag gcccatggcc gcaccgccga
      241 acagcgcggc gtacagcaca tcaaggtggg cgaaggcgac ccagcccggc gtcagttcgg
      301 ccagcagcga caccagcagc acggcgcagc cggtgcgcag ggtgaaggcc cagcccaggc
      361 gccagatgcc gagcacgtag aacggcagat tgaccaggca gaacaccagg ccgaacggcc
      421 agccggccag gtacttggcc aggaaggcga tgcccactgt gccgccggta agcagcccgg
      481 cgtgggtgta gaaggcgatg cccagggcca ccagggcggt gccgaacagc agcgccaggg
      541 catcctccca cagcgggtgg cggacgaaga tggcggcgat ggtttccgcc tcgggcgtgt
      601 cgatagggtc ggtcatgtgc agatcttggc ggataaaggc aaaagcatag ggcgccgcct
      661 tcgggcgaag gcgacgtcga tcaatgacag tgaagaaaag tcctagcggc ctgtgcggtt
      721 aatgcgtgca ttcaagttcg agtgtcaggt ttgccagact aggcgtcgcg acgagtcgta
      781 gcagagctac ggcgaggagc ggcaacgacg tatggcgaag cctggcgccg aaattggata
      841 tttgaattag ccaaacaggc cactagcggc gctgccaggt ctcgaagcgg taggccggcg
      901 aagcgtcggt cgcttcgtgc tcctcgtgct cgctgcgctg ccagtcgccc tcggcgaagg
      961 ccgggaacca ggcatcgccc ttgggctgca gcgccacgcg ggtcaggtac agacgcgcgg
     1021 cccgggccag gccctgctcg tagagctggg cgccgccgat cagcatcagc tcgtccacgc
     1081 cctgctcacg cgcccacgcg tcggcacgga cgatggcggc gtccagcgac gggaagactt
     1141 ccgcgccctc cagttgcagc ccggcctggc ggctgaccac caggttgagc cggcccggca
     1201 gcggacggcc cagcgaatcc caggtcttgc ggcccatgat gatcggcttg ccgagtgtct
     1261 tggccttgaa gtgcttgagg tccgccggca ggtgccaggg cagttggttg tcgcggccga
     1321 tcacgcggtt gtcggcgagg gcggcgatca ggcagagggg cagggtctgg ttcatggcgg
     1381 cgagaatacc agagcatccc ctgcgaagca gcgcacaggc gcggccacgg tcatcggcct
     1441 gcaacgacag gttcggcaaa cggtcatgcc gcgcgctcag ggtgagaggg ctgttaccct
     1501 ctccccatcc cgcaaggagc gtcgatatgt ctatccacac cctgcggcat tggctggttg
     1561 ccgccagcct gacgttgccc ctgttcaccc atgccgccga caccgcagcc accgcccgcg
     1621 ccgagcaggc gccgctggtg atcggccacc gcggcgccag cggctatgtg cccgaacaca
     1681 ccctcgcctc ctacgccctg gccgtgctgc agggcgccga ctacgtcgag ccggacctgg
     1741 tgatgacccg cgacggccaa ctggtggcgc gtcacgacaa cgagctgggg ctgaccaccg
     1801 acgtggccga ccgcccggaa ttcgccgacc gcaggcgcac ccagacggtg gacggcgtca
     1861 gcctcagcgg ctggttcagc gaggacttca ccctggccga actgaagacc ctgcgcgcca
     1921 tcgagcgcat ccccgacatc cgccccggca acgcacggct ggacggcgcc ttcgaggtgc
     1981 cgacgctgca ggagatcatc accctggtga agaccatgga acgcagcgag cggcggcgca
     2041 tcggcctgta catcgagacc aagcacccga cccacttcca gcagctcggc ctggcgatgg
     2101 aggcgcctct gctgcgcacc ctcgcccgca acggctacaa ggaccaccgc gatccggtgt
     2161 acatccagtc gttcgaggtc gacaacctgc gccacctggc tcgccacagc cgcctgcgcc
     2221 tggtccagct gttcggcagc ggccagccct acgaccagca ggcgcagggc tcgcagctga
     2281 cctacgcgaa gatggccacg gccgagggcc tgcgccgcgt cgcccgctac gccgccgggg
     2341 tcggcccgga gaagagctac gtgatcccgc gcgacggggc cggcaacctg ggccagccga
     2401 cccgcttcgt cgccgacgcc cacgccgccg ggctcaaggt gcacccctac ac
//
LOCUS       DATIHC010000088         4112 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_23475, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000088 DATIHC010000000
VERSION     DATIHC010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4112
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23475"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..876)
                     /locus_tag="VLF16_01495"
     CDS             complement(<1..876)
                     /locus_tag="VLF16_01495"
                     /EC_number="3.4.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016491137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070573 - metallodipeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane dipeptidase"
                     /protein_id="HSX69578.1"
                     /translation="MRKLLLALLILVPLAAGIFFTLPTLLDRQMNSVANPAPYPASDK
                     AEHLHQRLFIADLHDDALLWQRDLLQRHDYGHSDLPRLLEGRVGLQVFSTVTKTPRGI
                     NYESNGADSDNITLLAMAQRWPRATWGSLLERALYQADKLKKAATASEGRLVLVRNRG
                     ELASFLEDWRRDPQRLATVLATEGLQPIEGRLENVDRLYDAGFRIAGLTHFFDNEVGG
                     SAHGLDKGGLTPLGRQVITRLEEKRMLVDLAHASKPLIDDVLAMAKRPVLVSHTGVAG
                     TCPGPRNLSDDHLQRI"
     gene            complement(979..1917)
                     /locus_tag="VLF16_01500"
     CDS             complement(979..1917)
                     /locus_tag="VLF16_01500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004424222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HSX69579.1"
                     /translation="MKNAHWQQDIQQISRLRLFQNIAASSLQLLLQEFRACELEASEI
                     LLSPFNRNQHLYLLLEGELKVYLGSLDNQPVITLRPGDCAGEISFIDNDRPSAYVVAT
                     EPSLVLRLHRESLIKLFNQSPEMMQNLLRLLCDRVRQGNRLILDSEQNANVDILTGCF
                     NRRWLEHVYERESTRCAFNGQPLSMLMLDVDHFKAYNDQHGHLAGDYALCLVAHTLRN
                     QLRPKDSLVRYGGEEFVILLPELDAAEARTIGERLRQSLEQIGSFYSPVGILPGVTVS
                     LGMAQMQDRDGLESLIARADAALYKAKQQGRNRLFG"
     gene            complement(2160..2819)
                     /locus_tag="VLF16_01505"
     CDS             complement(2160..2819)
                     /locus_tag="VLF16_01505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017244350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSX69580.1"
                     /translation="MQQPLVVEPSQPADSCVIWLHGLGADRYDFEPVAQMLQRKLPGT
                     RFVLPQAPTQAVTINGGWAMPSWYDILAMSPARAIDKDQMEASAQTVIGLIEAQRDGG
                     IDPARIMLAGFSQGGAVVFHTAFLRWQGPLGGLLALSTYAPTFGEPLQLDDVRKSLPV
                     LCLHGSQDDVVPSFMGRAAHDALASQGVPVDWREYPMAHEVVAEEIDDIAAWLLQRLG
                     G"
     gene            3209..>4112
                     /locus_tag="VLF16_01510"
     CDS             3209..>4112
                     /locus_tag="VLF16_01510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003421775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HSX69581.1"
                     /translation="MKMVKSTLAVLTTAAVLGVSGFAQAGATLDAVKKKGFVQCGISD
                     GLPGFSYADAKGNYLGIDVDVCRAVAAAVFGDASKVKYSPLTAKERFTALQSGEVDML
                     SRNTTWTSSRDAAMGLNFTGVTYYDGQGFLVNKKLGVSSAKELDGATVCIQAGTTTEL
                     NLADYFRANGLKYTPITYDTSDESAKSLESGRCDVLTSDQSQLYAQRIKLAAPDDYVV
                     LPEVISKEPLGPAVRQGDEEWFDIVRWSLLAQLNAEELGITSANVEEMAKSTKNPDVA
                     RLLGAEGDFGKDLKLPKDWAVKIIK"
BASE COUNT          696 a         1279 c         1397 g          740 t
ORIGIN      
        1 gatgcgctgc agatggtcgt cgctgaggtt gcgcgggccg gggcaggtgc cggccacgcc
       61 tgtgtgggaa accagcaccg ggcgtttggc catcgccagt acgtcgtcga tcagtggctt
      121 ggaggcgtgg gccaggtcga ccagcatgcg tttctcttcc agacgggtga tcacctggcg
      181 gcccagcggt gtcagcccgc ccttgtccag accgtgggcc gagccgccca cctcgttgtc
      241 gaagaagtgc gtcaggccgg cgatgcgaaa gcccgcgtcg tacaggcgat cgacgttctc
      301 cagcctgccc tcgatgggct gcaggccctc ggtggcgagg accgtggcca ggcgttgcgg
      361 atcgcgccgc cagtcttcca gaaagctcgc cagctcgccg cggttgcgga ccagcaccag
      421 gcggccttcg ctggcggtcg cggccttctt gagcttgtcg gcctggtaca gggcacgttc
      481 gagcaggctg ccccaggtcg cccgcggcca gcgctgggcc atggccagca gggtgatgtt
      541 gtcgctgtcg gcgccgttgc tctcgtagtt gatgccgcgc ggcgtcttgg tcacggtgga
      601 gaacacctgc aggccgacgc ggccctcgag caggcgcggc aggtcggaat ggccgtagtc
      661 gtggcgctgc agcaggtcgc gctgccagag cagggcatcg tcatgcaggt cggcgatgaa
      721 caggcgctgg tgcagatgct cggccttatc gctggccggg tagggcgccg ggttggccac
      781 gctgttcatc tgccggtcga gcagggtggg aagggtgaag aagattcctg cggccagtgg
      841 cacgagaatc agcagggcga gcagcagctt gcgcatgacg gcatccgttc gttgttgtta
      901 tgcggcgact ctaacaagcg gcggcggagg cggcgattcg atggcggctt cgccggccgc
      961 tttggcgtga cggccctatc agccgaacag gcggttgcgg ccttgctgct tggccttgta
     1021 cagcgcggcg tcggcgcggg cgatcaggct ttccaggcca tcccggtcct gcatctgcgc
     1081 cataccgagg gagaccgtga cgcccggcag gatgcccacc ggcgaataga aggagccgat
     1141 ctgctccagg ctctggcgca ggcgctcacc gatggtgcgt gcctcggccg cgtccagttc
     1201 cggcaggagg atgacgaact cctcgccgcc gtagcgcacc aggctgtcct tggggcgcag
     1261 ctggttgcgc agggtgtggg ccaccagaca cagggcgtag tcgccggcca ggtggccgtg
     1321 ctggtcgttg taggccttga agtgatcgac atcgagcatg agcatgctca gcggctggcc
     1381 gttgaaggcg cagcgggtgc tctcgcgttc gtacacatgt tccagccagc ggcggttgaa
     1441 gcagccggtg aggatgtcga cattggcgtt ctgttcgctg tcgagaatca gccggttgcc
     1501 ctgacgtacc cggtcgcaga gcagcctcag caggttctgc atcatttccg gcgactggtt
     1561 gaacagcttg atcagcgact cgcggtgcag gcgcaggacc agcgacggct cggtggcgac
     1621 cacataggcc gaggggcggt cgttgtcgat gaagctgatc tcgccggcgc agtcgcccgg
     1681 ccgcagggtg atgaccggct ggttgtcgag ggagccgaga tagaccttca gctcaccctc
     1741 gagcaagagg tagaggtgct ggttgcggtt gaagggcgag agcaggatct cgctggcctc
     1801 cagctcgcag gcgcgaaatt cctgcagcaa cagctgcagg ctgctggcgg cgatgttctg
     1861 gaacaggcgc agccggctga tctgctggat atcttgctgc cagtgggcgt ttttcattgc
     1921 gagaacgaat gacctgtctg gcggtggata aggggcatcg cttaacactc cctgtcgtga
     1981 gggcgaaaca ccaaacggcg aacatatgtc cgccctcgtg accggtgcaa tcctcggtcc
     2041 ggagacgccc gaccagcggt cgcaagggct ggacgggcct gcgcacgacg tcacaggacg
     2101 ggcgtttgcc agcgccgtgc ggcgtgcccg gtcggcgtct cgatcgcctt atgacagcgt
     2161 cagccgccca ggcgttgcag caaccatgcg gcgatgtcgt cgatttcctc cgcgaccacc
     2221 tcatgcgcca tggggtattc gcgccagtcc accggcacgc cctggctcgc cagcgcatcg
     2281 tgcgcggcgc gacccatgaa ggacggcacc acgtcgtcct ggctgccgtg caggcagagg
     2341 accggcaggg atttgcggac atcgtccagt tgcagcggct cgccgaaggt cggcgcgtag
     2401 gtcgacaggg ccagcagtcc gcccagcgga ccctgccagc gcaggaatgc ggtgtgaaac
     2461 accaccgcgc cgccctggga gaagccggcc agcatgatcc gcgccggatc gatgccgccg
     2521 tcgcgctgcg cctcgatcag gccgatcacc gtctgcgccg aggcctccat ctgatccttg
     2581 tcgatcgccc gtgcagggct catggcgagg atgtcgtacc agctcggcat ggcccagccg
     2641 ccattgatgg tcactgcttg ggtcggcgcc tgcggcagga cgaagcgggt gcccggcagt
     2701 ttgcgctgga gcatctgcgc caccggctcg aagtcgtaac gatcggcccc caaaccgtgt
     2761 aaccagatga cgcaggagtc tgccggctgg gagggctcca ctactaaggg ttgttgcatg
     2821 cgtgcctctt tttggtgcgc tttgtcgggt ttggtgcggc ggctctgttc ggcgatggcg
     2881 gatcacttaa caagatgtcg cactactaga actttaccta ttgaccgacc gtcaatcggg
     2941 ctcggccgtg aaactggtac ggcccttgct gtactggtcc tgtccggcgg gggccgcttc
     3001 gctgcggaaa gccggacgat ctgctcgtct cctttctgta agacctacgg aaatgaaagg
     3061 gtcgttcgcc gctctgcgga acggcaacta gactcctttc aggttcgcac cccggttgat
     3121 cctgccatgg tggcgggatc gaacgtgcct cacaagggta cggcggcagg accgagaccc
     3181 gaccaaacaa gaacacttgg aggttttgat gaagatggtg aaatccaccc tggcagtact
     3241 gaccacggct gcggttctcg gtgtgagcgg tttcgctcag gccggtgcga ccctggatgc
     3301 ggtgaagaag aaaggcttcg tgcaatgcgg tatcagcgac ggcttgcccg gtttctccta
     3361 cgccgacgcc aagggtaact acttggggat cgacgtggac gtgtgccggg ccgtggctgc
     3421 cgccgtattc ggcgacgctt ccaaggtcaa gtacagcccg ctgaccgcca aggagcgctt
     3481 caccgcgctg caatccggcg aagtcgacat gctgtcgcgc aacaccacct ggaccagctc
     3541 ccgcgatgcg gcaatgggcc tgaacttcac cggcgtgacc tactacgacg gtcagggctt
     3601 cctggtgaac aagaagctcg gcgtttccag cgccaaggaa ctggacggcg ccaccgtgtg
     3661 catccaggcc ggtaccacca ccgagctgaa cctggccgac tacttccgcg ccaacggcct
     3721 gaagtacact cccatcacct acgacacttc tgacgagagc gccaagtccc tggagtccgg
     3781 ccgttgcgac gtgctgacct ccgaccagtc ccagctctac gcccagcgca tcaagctggc
     3841 cgcgccggac gattacgtgg tcctgccgga agtgatctcc aaggagcccc tcggcccggc
     3901 cgtgcgtcag ggtgacgagg agtggttcga catcgtgcgc tggtccctgc tcgctcagct
     3961 gaacgccgaa gaactgggca tcacctccgc caacgtcgaa gagatggcca agtccaccaa
     4021 gaacccggac gtcgcccgtc tgctgggcgc cgagggtgac ttcggcaagg atctgaagct
     4081 gccgaaagac tgggcggtga agatcatcaa gc
//
LOCUS       DATIHC010000089         2865 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30579, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000089 DATIHC010000000
VERSION     DATIHC010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2865
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30579"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1027)
                     /locus_tag="VLF16_01515"
     CDS             complement(<1..1027)
                     /locus_tag="VLF16_01515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013982908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDOD domain-containing protein"
                     /protein_id="HSX69582.1"
                     /translation="MAERSIGLQAWIDRLNQAELPALAAVVQDLHRLSQADKASVQQL
                     ADLLLRDASLTSKVLRVGNSAYYNPSQESIRTISRAIVLIGFDNVRLIGMSVSLIDSL
                     LTKVPREQLQMLLARSFHAAVQARNIAGYVLTRNQEEVFIAALLHTVGELAFWACGGE
                     QADELADALRQPGIDADDAVRQVLGTSFRQLTQGLVKSWNLGELASFAHGSGNQHDPA
                     VRAVSLGVKISEAALDGWDSPEMEKLVQQLADFTGVSPEDALKQVLESAEEAVEVAAT
                     FGASQLCRLIPNTDPEQIKLQQQERKARLLQPDLLVLQQALQDLGMMVNQKGDVGMVL
                     DTLLKGLH"
     gene            1273..>2865
                     /locus_tag="VLF16_01520"
     CDS             1273..>2865
                     /locus_tag="VLF16_01520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HSX69583.1"
                     /translation="MRLLLSLIFGLAMSFPAFATLSESHGYAQFGALKYPASFTHFDW
                     VNPGAPKGGTLRVMALGTFDTLNPYSFKGSSPSAAPNFLHYGVSDFNEPLMVGTGPYD
                     PSGDEPASSYGLIAKSVEYNEDRSWVVFNLRKEARFHDGKPITAYDVAFSYRTLVRDG
                     HPQYRTYLQEVQRVDILDRHRIRFVLKRAGNPLLILRLGELPVLAQHYWKNRDFKATS
                     FDVPLGSGPYRIAQVEPGRRLVFERVKDWWGEKLAVNRGKYNFDRVEVEFYRDSSVAF
                     EAFKAGEFDFYVEHQAKNWANGYRFPAIARGDVIRAEIPHQIPTQTQALFMNSRRDTF
                     AQRKVREALGLMFDFEWTNRALFNSAYRRSTSYYPNSEFSATGKPEGGEWLMLSPYRK
                     QLPAKLFTQPFTLPATDGRGIPRETLRRALGLLAEAGWKPSGQRLVNARGEALRFEIL
                     LVNPNLERILQPYTENLASIGIQADLRTVDRAQYKQRLDQFDYDMILMTLPQSLNPGL
                     EQWLYFHSSQAGVKGSKNYAGVR"
BASE COUNT          514 a         1019 c          856 g          476 t
ORIGIN      
        1 gatgcaagcc cttgagcagg gtgtcgagga ccatcccgac atcacccttc tggttgacca
       61 tcatccccag gtcctgcagg gcctgttgca gcaccagcag gtctggctgc agcagcctgg
      121 ccttgcgttc ctgctgctgc agcttgatct gttccgggtc ggtattgggg atcagccggc
      181 acaactggct ggcgccgaag gtggccgcca cttcgaccgc ctcttcggca ctttccagca
      241 cctgcttgag cgcgtcttcc gggctcacgc cggtgaagtc ggccagttgc tgcaccagct
      301 tttccatctc cggcgagtcc cagccgtcca gcgccgcctc gctgatcttc acgcccaggc
      361 tgaccgcgcg caccgcgggg tcgtgctggt tgccgctgcc gtgggcgaag ctggccagct
      421 cgccgaggtt ccagctcttc accaggccct gggtgagctg gcgaaaactg gtgccgagca
      481 cctggcgcac cgcgtcgtcg gcatcgatgc ccggctgtcg cagggcatcg gccagctcat
      541 cggcctgctc gccaccacac gcccagaagg ccagctcgcc caccgtgtgc aacagggcgg
      601 cgatgaacac ctcttcctgg ttcctggtca gcacgtagcc ggcgatgttg cgcgcctgca
      661 cggcggcgtg gaacgagcgc gccagcaaca tctgcagctg ctcgcgcggc accttggtca
      721 gcaggctgtc gatcaggctg accgacatgc cgatcagtcg cacgttatcg aagccgatca
      781 gcacgatggc ccgcgagatg gtgcggatgc tctcctgcga ggggttgtag taggcgctgt
      841 taccgacccg cagcaccttg gaggtgagcg aggcgtcgcg cagtagcagg tctgccagct
      901 gctgcaccga ggccttgtcg gcctgcgaca ggcgatgaag gtcctgcacc acggcggcga
      961 gagctggcaa ttcggcctga ttcaaacggt ctatccatgc ctgtaacccg atactgcgtt
     1021 ccgccaagac agcaacctca ttgcaatttg tttcagtgta atcaaattga tggcacaggg
     1081 gccgaataag gcactctttt tccagcctat acaagctgtt actgtacgga ccaaacaacc
     1141 agctggcctg caggcaggcc tgtgcagcac gcaacggtaa ggccggacgg ccaccctcgg
     1201 cggcaacgcg cacacgatcc acctgccccc acagaggccg ccacaagccc catggaccgg
     1261 attccgcacc cgatgcgtct cctcctctcg ctgatcttcg gcctggccat gagctttccc
     1321 gccttcgcga ccctcagcga aagccacggt tacgcccagt tcggcgcgct caagtacccg
     1381 gccagcttca cccacttcga ctgggtgaac cccggtgcgc ccaagggcgg caccctgcgc
     1441 gtcatggccc ttggcacgtt cgacacgctc aacccctaca gtttcaaggg cagcagcccc
     1501 tcggcggcgc ccaacttcct gcattacggg gtcagcgact tcaacgagcc gctgatggtc
     1561 ggtaccggcc cctacgaccc gtccggcgac gagccggcct cgagctacgg gctgatcgcc
     1621 aagagcgtgg agtacaacga agaccgcagc tgggtggtgt tcaacctgcg caaggaggca
     1681 cgcttccacg acggcaagcc gatcaccgcc tacgacgtgg cgttttccta ccgcaccctg
     1741 gtccgcgacg gccacccgca ataccgcacc tacctgcagg aggtgcagcg ggtcgacatc
     1801 ctcgaccgcc accgcatccg cttcgtgctc aagcgcgcgg gcaatccgct gctgatcctg
     1861 cgcctgggcg agctgccggt gctggcccag cactactgga agaaccgcga cttcaaggcc
     1921 accagcttcg acgtgccgct gggcagcggc ccctaccgca tcgcccaggt cgagccgggc
     1981 cggcgcctgg tgttcgagcg ggtcaaggac tggtggggcg agaagctggc ggtgaaccgt
     2041 ggcaagtaca acttcgaccg ggtcgaggtg gagttctacc gcgacagcag cgtcgccttc
     2101 gaggcgttca aggccggcga attcgacttc tatgtcgaac accaggcgaa gaactgggcc
     2161 aacggctacc gctttccggc catcgcccgc ggcgacgtga tccgcgccga gataccgcac
     2221 cagatcccca cgcagaccca ggcgctgttc atgaacagcc gccgcgacac cttcgcccag
     2281 cgcaaggtgc gcgaggccct gggcctgatg ttcgacttcg aatggaccaa ccgcgcgctg
     2341 ttcaacagtg cctacaggcg cagcaccagc tactacccca atagcgaatt cagcgcgacc
     2401 ggcaagccgg agggcggcga atggctgatg ctgtcgccct atcgcaagca gctgccggcc
     2461 aagctcttca cccagccgtt caccctgccc gccaccgacg gccgcggcat cccgcgcgag
     2521 accctgcgcc gcgccctcgg cctgctcgcc gaggcaggct ggaaaccttc cggccagcgc
     2581 ctggtcaacg ccaggggcga ggccttgcgc ttcgagatcc tgctggtcaa ccctaacctg
     2641 gagcgcatcc tccagcccta caccgagaac ctcgccagca tcggcatcca ggccgatctg
     2701 cgcaccgtcg accgcgccca gtacaagcag cgcctcgacc agttcgacta cgacatgatc
     2761 ctcatgaccc tgccgcagag cctcaatccc ggcctggaac agtggctgta cttccattcc
     2821 agccaggccg gcgtgaaggg cagcaagaac tacgcaggcg tgcgc
//
LOCUS       DATIHC010000090         1784 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35367, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000090 DATIHC010000000
VERSION     DATIHC010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1784
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35367"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            99..1079
                     /locus_tag="VLF16_01525"
     CDS             99..1079
                     /locus_tag="VLF16_01525"
                     /inference="COORDINATES: protein motif:HMM:NF017773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSX69584.1"
                     /translation="MLFITNRFPKGSIKTEIDRPFSFDLNNNAPSNSVYFCERQSKRK
                     LVEVGSQAFLGRLQEARQRQILLYIHGYSNLPDDVFASVEEFQALCERSGKDEVLVVP
                     VIWPCDNDHGIVQDYWDDQKSADYSAVSLARALCFFLAWRKEREEAGQPSCLKRINVL
                     AHSMGNRVLRETLCEWDRYDLANGVPMLFRNTFLIAADIENESIHRGQRGELIAHASR
                     NVVVYYASDDLALRSSKAANVKNRIASRRLGHSGPENLELTPQNVYAVDCDDINTLYD
                     FPKGHSYFRSGRTPGVSGVVFDHLFECLVSGRVFPQDEFRRTSILHDSAA"
     gene            complement(1140..>1784)
                     /locus_tag="VLF16_01530"
     CDS             complement(1140..>1784)
                     /locus_tag="VLF16_01530"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HSX69585.1"
                     /translation="DQRRLLARVHHLYAGDALPTLDDFDLLVVMGGPMSVHDEAEHPW
                     LVAEKQLLRAALDAGKRVLGICLGGQLLAEALGAEVRVADTAEIGWHRIEQHAAASQS
                     PLGRMLPQRLMAMHWHGETFGLPAGAIPLYHSAACAMQGFVWQERAVALQCHLESSPA
                     SIEQLIAACPQDLARPGAVQDAATIQAGSAHCASLKASLFRLLDYLSGPHAQLT"
BASE COUNT          300 a          630 c          591 g          263 t
ORIGIN      
        1 aagcacagga gtgcgccgct gtcagtcctt tctccctcgc tgttctgccg cgcccgccgc
       61 ccatgcggcc ccgtcagcaa tcgccaggga gcatcgccat gctgttcatc accaatcgct
      121 tccccaaggg ctcgatcaag accgagatcg atcgcccgtt ctcctttgac ctgaacaaca
      181 acgcgccgag caactcggtg tacttctgcg agcggcagag caagcgcaag ctggtcgagg
      241 tcggcagtca ggccttcctc ggccggctgc aggaggccag gcagcggcag atcctgctgt
      301 acatccacgg ctactccaac ctgccggacg acgtgttcgc ctccgtcgag gaattccagg
      361 cgctgtgcga gcgcagcggc aaggacgagg tgctggtggt gccagtgatc tggccgtgcg
      421 acaacgacca cggcatcgtc caggactact gggacgacca gaagtccgcc gactacagcg
      481 ccgtgtcgct ggcccgcgcg ctgtgcttct tcctcgcctg gcgcaaagag cgcgaggagg
      541 ccggccagcc cagctgcctc aagcgcatca acgtgctggc ccattccatg ggcaaccgcg
      601 tactgcgcga gaccctctgc gaatgggacc gctacgacct ggccaatggc gtgccgatgc
      661 tgttccgcaa caccttcctg atcgccgccg acatcgagaa cgagtcgatc caccgcggcc
      721 agcgcggcga gctgatcgcc cacgcctcgc gcaacgtggt ggtgtactac gcctcggacg
      781 acctggccct gcgcagcagc aaggcggcca acgtgaagaa ccgcatcgcc tcgcgtcgcc
      841 tcggccacag cgggccggag aacctggagc tgacgccgca gaatgtctac gcggtggact
      901 gcgacgacat caacaccctc tacgacttcc ctaagggcca ctcgtacttc cgcagcggca
      961 ggacgccggg cgtgtccggc gtggtcttcg accacctgtt cgagtgcctg gtcagcggcc
     1021 gggtattccc ccaggacgag ttccgccgca ccagcatcct gcacgacagc gcggcctgaa
     1081 tcgcggccat aaaaaaggcc ccgggagtgg ggccaagcgc agggtgacaa acgcgcgaat
     1141 caggtgagct gggcgtgcgg cccgctgagg tagtcgagca ggcggaacag gctggccttg
     1201 agcgaggcgc aatgggcgct gccggcctgg atggtggcgg cgtcctgcac ggcgccgggc
     1261 cgcgccaggt cctgcgggca ggcggcgatc agctgctcga tgctcgccgg gctgctctcc
     1321 aggtggcact gcagggccac ggcgcgctcc tgccagacga agccctgcat ggcgcaggcc
     1381 gccgagtggt agaggggaat ggccccggcc ggcaggccga aggtctcgcc atgccagtgc
     1441 atggccatca accgctgcgg cagcatgcgc ccgagcggcg actggctcgc cgcggcgtgc
     1501 tgctcgatcc ggtgccagcc gatttccgcc gtgtcggcca cgcgcacctc ggcgcccagg
     1561 gcctcggcca gcagctggcc gccgaggcag atgcccagca cgcgcttgcc ggcatcgagc
     1621 gcggcgcgca gcagctgttt ctcggccacc agccagggat gctcggcctc gtcgtgcacg
     1681 ctcatcggcc cgcccatgac caccagcagg tcgaagtcgt ccagcgtcgg cagcgcatcg
     1741 ccggcataca ggtgatggac ccgcgccagc aggcggcgct ggtc
//
LOCUS       DATIHC010000091         1709 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2550, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000091 DATIHC010000000
VERSION     DATIHC010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1709
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2550"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..326
                     /locus_tag="VLF16_01535"
     CDS             <1..326
                     /locus_tag="VLF16_01535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011063732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HSX69586.1"
                     /translation="YWLMLGVTMLFGFWLCGRVAEDMGVHDHEGIVWDEMVGMWITLW
                     LVPEGWYWLLLGFLVFRIFDVIKPWPIRWIDRHVHGGIGIMLDDVLAGVFAWVAMQLL
                     VWGLA"
     gene            342..1094
                     /locus_tag="VLF16_01540"
     CDS             342..1094
                     /locus_tag="VLF16_01540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HSX69587.1"
                     /translation="MGVRWLALLLCLCWPAVRAEPPPSEVRLVSEHWLDHTNPDGSGL
                     AWDLMRKVFEPAGVEVQLRIAPYTRSIGLVQRGEADAWLGSYRGEVKDDIVYPRWPYD
                     ADRITSLSLRSLPAPTLASIGQYRLTWMRGYAYQRYLPGVSRFQEVRRRVGILRMLEL
                     GHTDFYLDAATEVDEVLSEAPDPARFRTTELTRLPLYAGFADTARGRALAALFDRRMA
                     ELVKDGELRPIFRRWRQPYPFDEDMEIPDASP"
     gene            1081..>1709
                     /locus_tag="VLF16_01545"
     CDS             1081..>1709
                     /locus_tag="VLF16_01545"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020306657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02281 family clan AA aspartic protease"
                     /protein_id="HSX69588.1"
                     /translation="MRRLELFAASLLLALSPLLHAETQVQVVGLFPGAAVLLVDGQRK
                     LVRTGQTGPGGVRVISADSKGAVLEVDGVQRSYGMTREYNQAGSSGPQKTQLSISRGV
                     GNHYWVAGSIEGHPVQFLVDTGATSVAMNEGQARRLGIDYRVVGRPMVASTAGGNVKA
                     WRVKLDSVKVGGLEVLGVEGVVLEGGSPSEVLLGMSYLSRVRWREDNGVL"
BASE COUNT          242 a          569 c          610 g          288 t
ORIGIN      
        1 gctactggct gatgctcggc gtcaccatgc tgttcggctt ctggctgtgc gggcgagtgg
       61 ccgaagacat gggcgtgcac gaccacgagg gcatcgtctg ggacgagatg gtcggcatgt
      121 ggatcaccct ctggctggtg cccgagggct ggtactggtt gctgctaggc ttcctggtat
      181 tccgcatctt cgatgtcatc aagccgtggc cgattcgctg gatcgaccgc catgtgcacg
      241 gcggcatcgg aatcatgctg gacgacgtac tggccggcgt gttcgcctgg gtggcgatgc
      301 aactgctggt ctggggcctg gcctgacccg ggagagtgtc gatgggtgtc cgctggctgg
      361 cattgctgct gtgcctgtgc tggccggcgg tccgggccga gccgccgccg agcgaggtcc
      421 ggctggtcag cgagcactgg ctcgaccaca ccaaccccga cggtagcggc ctggcctggg
      481 acctgatgcg caaggtgttc gagccggccg gcgtcgaggt gcagctgcgc atcgccccct
      541 atacccgctc catcggcctg gtccagcgcg gcgaggcgga tgcctggctc ggctcctacc
      601 gcggcgaagt gaaggacgac atcgtctacc cgcgctggcc ctacgacgcc gaccggatca
      661 catccctgtc cctgcgcagc ctgcccgcgc cgacgctggc gagcatcggc cagtaccgcc
      721 tgacgtggat gcgtggctac gcgtaccagc gctatctgcc gggcgtgagc cgctttcagg
      781 aggtccgccg ccgcgtcggc atcctgcgca tgctcgagct gggtcacacc gatttctacc
      841 tggacgccgc caccgaggtt gacgaggtcc tgagcgaggc gccggaccct gcgcgctttc
      901 gcacaaccga gctgacccgc ttgccgctgt acgccggctt tgccgatact gcccggggcc
      961 gcgccttggc cgcgctgttc gatcggcgca tggccgagct ggtgaaggac ggcgagctac
     1021 ggccgatctt ccgccgctgg cggcagccct atcccttcga cgaggacatg gagatccccg
     1081 atgcgtcgcc ttgaactgtt cgccgccagc ctgctgctgg ccctgagccc gctgctgcac
     1141 gccgagaccc aggtgcaggt ggtcggcctg ttccccggcg ccgcggtgct gctggtcgac
     1201 ggtcagcgca agctggtgcg caccggccag accggaccgg gcggcgtgcg cgtgatcagc
     1261 gccgacagca agggcgcggt gctggaagtc gacggcgtgc agcgcagcta cggcatgacc
     1321 cgcgaataca accaggccgg cagcagcggg ccgcagaaga cccagctcag catcagtcgc
     1381 ggcgtgggca accattactg ggtggccggt tccatcgagg gccatccggt gcagttcctg
     1441 gtcgacaccg gcgccacctc ggtggcgatg aacgaaggcc aggcccggcg cctgggcatc
     1501 gactaccggg tggtcggccg ccccatggtg gccagcaccg ccggcggcaa cgtcaaggcc
     1561 tggcgcgtca agctcgacag tgtcaaggtc ggcggcctgg aagtgctcgg cgtggaaggt
     1621 gtggtcctgg aaggcggttc gccctccgag gtgctgctgg gcatgagcta cctcagccgg
     1681 gtgcgctggc gcgaggacaa cggcgtgct
//
LOCUS       DATIHC010000092         1684 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4995, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000092 DATIHC010000000
VERSION     DATIHC010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1684
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4995"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..946)
                     /locus_tag="VLF16_01550"
     CDS             complement(<1..946)
                     /locus_tag="VLF16_01550"
                     /inference="COORDINATES: protein motif:HMM:NF022821.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3182 family protein"
                     /protein_id="HSX69589.1"
                     /translation="MKHRDGVLLLPDEAGVSQHERAVHQVLGRKIAALLGTRFLGEHE
                     AGRGAGGTFYWIPSETLIGSQRCRELGIQGIEDFFGGMVEQPFMATKAISHPLATDDG
                     RIPPGWSKAFSEQVAGAILGGSTLFDLSHAQRAGERLLEQGAIRLKPVRGKAGRGQEV
                     IRNPAELAEYLAEQDADEIATWGLVLEENLTEVVTYSVGQVHVAGMVASYYGNQRLTR
                     DNTGAEVYGGSDLTLVRGDYSQLMRLDMPEPIRLAVSQAQLYERAAIDAFGLLASRRN
                     YDVAQGVDCQGRQRSGVLEQSWRIGGASAAEIFALEAFA"
     gene            complement(943..1371)
                     /locus_tag="VLF16_01555"
     CDS             complement(943..1371)
                     /locus_tag="VLF16_01555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020798447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69590.1"
                     /translation="MIAKTALLLIGSLLAPMAMAEGCHILTRTASPGVEPVETESCYE
                     FKGMPEGSINWSCSNESQATLGSRKEKVAQCEGDYKASCTAAMTQEALANHQSSSNNP
                     EPNEANVPDDAKVVTYYYGLEDRTQARKDCEVSGGEWKDR"
BASE COUNT          266 a          543 c          554 g          321 t
ORIGIN      
        1 cggcgaaggc ctccagggcg aagatttctg ccgcgctggc gccgccgatg cgccacgact
       61 gttcaagcac accggagcgc tgccggccct ggcagtcgac gccttgggcc acgtcgtagt
      121 tgcgccgcga agcgagcagg ccgaaggcgt cgatggccgc ccgctcgtag agttgtgcct
      181 gagacacggc caggcggatg ggctcaggca tgtccaggcg catcagctgc gagtaatcgc
      241 cgcgtaccag ggtgagatcg gagccgccgt acacctcggc gccggtgttg tcgcgggtca
      301 ggcgctggtt gccgtagtag ctagcgacca tgccggcgac atgcacctgg ccgacgctgt
      361 aggtcactac ctcggtgagg ttctcctcca gcaccaggcc ccaggtcgcg atctcgtcgg
      421 cgtcctgttc cgccaggtac tcggccagtt cggctgggtt gcggatcacc tcctggccgc
      481 gtccggcctt gccgcgcacc ggcttcaggc ggatggcacc ctgttccagc aggcgttcgc
      541 cggcgcgctg ggcgtggctc aggtcgaaca gcgtgctgcc gccgagaatg gcgcctgcga
      601 cctgctcgga aaaggccttc gaccacccgg gcggaatccg gccgtcatcg gtagcgagcg
      661 ggtgactgat ggccttggtc gccatgaacg gctgttccac catgccgccg aagaagtcct
      721 cgatgccctg aatgccgagt tcccggcagc gctgggagcc gatcagagtc tcgctcggaa
      781 tccagtagaa ggtgccgccg gccccacgcc cggcctcgtg ctcgccgagg aaacgagtgc
      841 cgagcagggc ggcaatcttg cgtccgagca cctggtgcac ggcccgctcg tgctggctga
      901 cgccggcctc gtcgggcagc agcagaacgc cgtccctatg cttcatcgat ctttccattc
      961 gcccccgctc acttcgcagt ccttacgggc ctgggtgcga tcctccaggc cgtagtaata
     1021 agtcaccacc ttggcatcgt ccggcacgtt cgcctcgttg ggctccgggt tattgctcga
     1081 tgactgatgg ttggccagcg cttcctgggt catggcggca gtgcagctgg ccttgtagtc
     1141 gccctcgcac tgggcgacct tttccttgcg gctgccgaga gtcgcctgac tctcgttgct
     1201 gcacgaccag ttgatcgagc cctccggcat gcccttgaat tcgtagcagc tctcggtttc
     1261 gacgggctcc acgccggggc tggcggtgcg ggtgaggatg tggcagccct cggccatggc
     1321 cattggtgcg agcaggctgc cgattagcaa taacgcggtc ttggcgatca ttcgatgcct
     1381 ccggttcggt gcgcggtcct aaggctgtga gccggacggc ggctgtggag ttccgccttt
     1441 ctgcccgcat aaaaaggtgg aactaagcgg gcccgtatac gcccttagct cagtagtacc
     1501 tgaggaggga acgccgtaat gaagagagac aagcaactga tcaaggcctt gctgctggag
     1561 atcgaaagcc gtgaccacgg ccactatttt gagccgcagc cttttgccgg ccacaccatc
     1621 gattcggtga aatatcacct gcatctgctg caccagggcg gcctggtgga gtgcgagctg
     1681 gagc
//
LOCUS       DATIHC010000093         2869 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37506, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000093 DATIHC010000000
VERSION     DATIHC010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2869
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37506"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..951
                     /gene="yejK"
                     /locus_tag="VLF16_01560"
     CDS             <1..951
                     /gene="yejK"
                     /locus_tag="VLF16_01560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009295 - nucleoid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein YejK"
                     /protein_id="HSX69591.1"
                     /translation="AVLHARDSELAASQAMENLLADLNESYNAKQGKAWGLFHEESGA
                     YPFSGWLKAYLDDEQDFTAFSRQAVEQLQKLMEESNLSTGGHVLFAHYQQGMTDYLAI
                     ALLHHSEGVAVTDALDVAPAKHLDLGQLHLAARINISEWRNNAHSKQYISFIKGKNGK
                     KVSDYFRDFIGCQEGVDAPSETRTLLKAFSDFVESEDMAEEQARAKTETLVDYATSQA
                     KIGEPITLDELSGLIDEDRPRAFYEHIRNKDYGMAPEFPADKRTLSQFRRFTGRAEGL
                     SISFEAHLLGSKIEYDEARDMLIIRQVPTQLKDQLKRRKD"
     gene            953..1288
                     /locus_tag="VLF16_01565"
     CDS             953..1288
                     /locus_tag="VLF16_01565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017130768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin family protein"
                     /protein_id="HSX69592.1"
                     /translation="MGKRLFVLLAVFAAWQHWDRIETFLGLGPTPRMAAADAPVVLYA
                     TSWCGYCAKTRSFLAEEGIAYTELDIEKSAEGRRAYDALGGQGVPLLTVGDTLVRGYD
                     PEGIKAALR"
     gene            complement(1592..2527)
                     /locus_tag="VLF16_01570"
     CDS             complement(1592..2527)
                     /locus_tag="VLF16_01570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004424199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HSX69593.1"
                     /translation="MSELILHHYDASPFAEKARLMLGYKQLSWRSVEIPRVMPKPDLT
                     ALTGGYRKTPVLQVGADIYCDTALIARRLEAEKATPALFPEGHELTAASFAQWADAVV
                     FQHAVALVFQPESIAVRMGKLPPAAQQAFVADRAALFSGGSATRLPLEQAKLQWPVLM
                     ARLEQQLAREEGDFLFGEASVADFAMAHPLWFLKGTHVTAPLVDDYPAVSAWLGRVLG
                     FGHGASSTLSADEAIAIARDATPAALPERDFGASLGVAKGQQVKVAATDYGVDPVQGE
                     LLCVAEESIILRREDERAGTVHVHFPRLGFRIEAC"
     gene            complement(2590..2862)
                     /locus_tag="VLF16_01575"
     CDS             complement(2590..2862)
                     /locus_tag="VLF16_01575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017639135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HSX69594.1"
                     /translation="MTDTPPAKPWFVYLVRAESGALYCGISDDPQRRFEQHRSGKGAR
                     FFHASPARALVYIETCVDKSAALRREIAIKRLKKAAKEALIVAAPG"
BASE COUNT          491 a          992 c          974 g          412 t
ORIGIN      
        1 gccgtgctgc acgcccgcga ctccgaactc gccgcgtcgc aggccatgga gaatctgctg
       61 gccgacctca acgagagcta caacgccaag cagggcaagg cctggggcct gttccacgag
      121 gaatccggcg cctatccctt cagcggctgg ctgaaggcct atctggacga cgagcaggac
      181 ttcaccgcct tcagccgcca ggccgtggag cagctgcaga agctgatgga ggagtccaac
      241 ctgtccaccg gcggccacgt gctgttcgcc cattaccagc aagggatgac cgactacctg
      301 gccatcgccc tgctgcacca cagcgagggc gtggcggtga ccgacgcgct ggacgtggcg
      361 ccggccaagc acctggacct cggccagctg cacctggcgg cgcgcatcaa catctccgag
      421 tggcgcaaca acgcgcactc caagcagtac atctcgttca tcaagggcaa gaacggcaag
      481 aaggtctcgg actacttccg cgacttcatc ggctgccagg aaggcgtcga cgcgccgagc
      541 gagacgcgca ccctgctcaa ggccttcagc gacttcgtcg agagcgagga catggccgag
      601 gaacaggccc gcgccaagac cgagacgctg gtcgactacg ccaccagcca ggccaagatc
      661 ggcgagccga tcaccctcga cgaactctcc gggctgatcg acgaggaccg cccgcgcgcc
      721 ttctacgagc acatccgcaa caaggactac ggcatggccc cggaatttcc ggcggacaag
      781 cgcaccctca gccagtttcg ccgcttcacc ggccgcgccg aggggctgtc gatcagcttc
      841 gaggcgcacc tgctgggctc gaagatcgag tacgacgagg cgcgcgacat gctgatcatc
      901 cgccaggtcc ccacccagtt gaaggaccag ctcaagcgtc gcaaggactg acatgggcaa
      961 acggctattc gtgctgctgg cggtgttcgc cgcctggcag cactgggacc gcatcgagac
     1021 cttcctcggc ctcgggccga cgccgcggat ggccgccgcg gatgcgccgg tggtgctcta
     1081 tgccaccagc tggtgcggct attgcgccaa gacccgcagc ttcctcgccg aggaaggcat
     1141 tgcgtatacc gagctggaca tcgagaagtc cgccgaaggc cgccgcgcct atgacgcgct
     1201 gggtggtcag ggcgtgccgc tgctgacggt gggcgacacg ctggtgcgcg gctacgaccc
     1261 cgaaggcatc aaggccgcgc tgcgctagtc cgccatccga gcagggtgcg ccatgcgcac
     1321 cgactctccg catggtgcgt gcggcgaacc ccacaaaagc ggcgcgacac gagtgccctc
     1381 gccgtacgtg cgggctcgga cgggcccggc gtggtagggt gcgccgcgcg caccaatcct
     1441 ctgcacggtg cgcacagcgc accctacaaa gcggctcgat acatcgtcat tgccacaacc
     1501 gggcgcggac cgcggatgcg ccgcgtcgcg tagggtgcgc cgtgcgcacc acccctgccg
     1561 cgcgcaccga ccggcgcacg cggcacgccg cttagcaggc ctcgatgcgg aagcccaggc
     1621 gcgggaagtg cacgtggacg gtgccggcgc gctcgtcctc gcggcgcagg atgatcgatt
     1681 cctcggccac acagagcagc tcgccctgca ccgggtcgac accgtaatcg gtcgccgcca
     1741 ccttcacctg ctggcccttg gcaacgccca gcgatgcgcc gaaatcccgc tccggcagcg
     1801 ccgccggcgt ggcgtcgcga gcgatggcga tagcctcgtc ggcgctcagg gtgctcgacg
     1861 cgccatgacc gaagccgagc acgcgaccga gccaggcgct gaccgccggg tagtcatcga
     1921 ccagcggcgc ggtgacatgg gtgcccttga ggaaccacag cgggtgggcc atggcgaagt
     1981 cggccaccga cgcttcgccg aacaggaagt caccctcctc ccgcgccagt tgctgttcca
     2041 ggcgcgccat cagcaccggc cactgcagct tggcctgctc cagcggcagg cgggtggcgc
     2101 tgccgccgga gaacagcgcg gcgcggtcgg cgacgaaggc ctgctgcgcg gccggcggca
     2161 gcttgcccat gcgcacggcg atggattccg gctggaacac cagggccacg gcatgctgga
     2221 acaccacggc atcggcccat tgggcgaagc tggcggcagt cagttcatgg ccttccggga
     2281 acagcgccgg ggtggccttc tcggcctcca ggcggcgggc gatcaacgcg gtgtcgcagt
     2341 agatgtcggc accgacctgc agcaccggcg tcttgcggta gccgccggtg agcgcggtga
     2401 ggtcgggctt gggcatgacc cgcggaatct ccaccgagcg ccacgacagc tgcttgtagc
     2461 cgagcatcag gcgggccttc tcggcgaagg gcgaggcgtc gtaatggtgc aggatcagtt
     2521 cggacatggc gggtctccgc ggcttattgg aatgcgaggc cgcagcttag ccgcagccgg
     2581 cgccgcggcc taccccggag cggcgactat cagcgcttcc ttggccgcct tcttcaggcg
     2641 cttgatggcg atctcgcggc gcagcgccgc gctcttgtcg acgcatgtct cgatatagac
     2701 cagggcacgg gccgggctgg catggaagaa gcgcgcgccc ttgccgctgc ggtgttgttc
     2761 gaagcgccgc tgcggatcgt cgctgatgcc gcagtagagt gcgccgctct cggcgcggac
     2821 cagatagacg aaccagggct tggcgggagg tgtatcggtc atggctcgg
//
LOCUS       DATIHC010000094         2203 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18897, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000094 DATIHC010000000
VERSION     DATIHC010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2203
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18897"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1455
                     /locus_tag="VLF16_01580"
     CDS             <1..1455
                     /locus_tag="VLF16_01580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018925072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HSX69595.1"
                     /translation="PPMLYMGYVGFSVAFAFAIAALLGGKLDAAWARWSRPWTIIAWA
                     FLGVGIALGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSW
                     TVLLAIAAFSLSLLGTFLVRSGVLTSVHAFANDPERGVFILVFLLVVVGSSLALFALR
                     APVVKSQVGFALWSRETFLLANNLVLVVAASMILLGTLYPLVLDALTGAKLSVGPPYF
                     NALFVPLMALLMLVLAVGVLVRWKDTPVKWLTGMLTPVLIGAAVLGFLASWAFGDFHW
                     SVLAVFLLAFWVLLAGVRDLLDKCRHKGLLKGVRSLSSSYWGMQLAHLGIAACAVGVV
                     LVSHGSAERDLRLAPGESLELGGYRFVFEGAEHFEGPNFTSDKGTVRVLDEGEEIAVL
                     HPEKRLYTVQQMPMTEAGIDAGFTRDLYVALGEPLEDGAWAVRVHIKPYVRWIWLGGL
                     MMGLGGLLAALDPRYRVKVRTRVRDVLGMKEATA"
     gene            1452..1985
                     /locus_tag="VLF16_01585"
     CDS             1452..1985
                     /locus_tag="VLF16_01585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbE family thiol:disulfide interchange protein"
                     /protein_id="HSX69596.1"
                     /translation="MKRLILLLPLALFLGVAVFLYRGLFLNPQELPSALIDKPLPAFS
                     LPDLKNEQRLVTEKDLKGPALVNVWATWCPTCKAEHQMLNRLAQAGVIIHGVNYKDDG
                     EAARKWLKDYLDPYQVNIADPKGSLGINLGVYGAPETFLIDAQGIIRHKYVGAIDERV
                     WREELAPRYQALLEDGQ"
     gene            1982..>2203
                     /locus_tag="VLF16_01590"
     CDS             1982..>2203
                     /locus_tag="VLF16_01590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003280414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein"
                     /protein_id="HSX69597.1"
                     /translation="MRRLLIACLLGLSLVGAARAAIDTYQFKDEVERERFRSLTEELR
                     CPKCQNQNIADSNAPIATDLRREIYRLLEE"
BASE COUNT          303 a          754 c          745 g          401 t
ORIGIN      
        1 ccgccgatgc tgtacatggg ctacgtcggc ttctcggtgg ccttcgcctt cgccatcgcc
       61 gcgctgctcg gcggcaagct ggatgccgcc tgggcgcgct ggtcgcggcc gtggaccatc
      121 atcgcctggg ccttcctcgg cgtcggcatc gccctgggct cctggtgggc ctattacgaa
      181 ctgggctggg gcggctggtg gttctgggac ccggtggaga atgcctcctt catgccctgg
      241 ctggtcggca cggcgctgat ccactcgctg gccgtcaccg agaagcgcgg cgtgttcaag
      301 agctggaccg tgctgctggc catcgccgcg ttctccctga gcctgctcgg tactttcctg
      361 gtccgctccg gcgtgctgac ctcggtgcat gccttcgcca acgacccgga gcgcggcgtg
      421 ttcatcctgg tgttcctgct ggtcgtggtc ggcagctcac tggcgctgtt cgccctgcgt
      481 gcgccggtgg tcaagagcca ggtgggcttc gccctgtggt cgcgcgagac cttcctgctg
      541 gccaacaacc tggtgctggt ggtggccgcc tcgatgatcc tgctcggcac cctctacccg
      601 ctggtgctgg acgcgctgac cggcgccaag ctgtcggtcg gcccgcctta cttcaatgcc
      661 ctgttcgtgc cgctgatggc gctgctgatg ctggtcctgg cagtcggcgt actggtgcgc
      721 tggaaggaca ccccggtgaa gtggctgacc ggcatgctca ccccggtgct gatcggcgcc
      781 gcggtgctcg gcttcctcgc cagctgggcc ttcggcgact tccactggag cgtgctggcg
      841 gtgttcctgc tggccttctg ggtgttgctg gccggcgtgc gcgacctgct cgacaagtgc
      901 cgccacaagg gcctgctcaa gggcgttcgc agcctctcca gcagttactg gggcatgcag
      961 ctggcgcacc tgggcatcgc cgcctgtgcc gttggcgtgg tgctggtcag ccatggcagc
     1021 gccgagcgcg acctgcgcct ggcgccgggc gagtcgctgg agctcggtgg ctaccgtttc
     1081 gtcttcgagg gcgcggagca cttcgaaggg ccgaacttca cctcggacaa gggcaccgtg
     1141 cgcgtgctgg acgagggcga ggagatcgcc gtactgcacc cggagaagcg cctgtacacc
     1201 gtgcagcaga tgccgatgac cgaggcgggc atcgatgccg gcttcacccg cgacctctac
     1261 gtcgccctcg gcgagccgct ggaggatggc gcctgggccg tgcgcgtaca catcaaaccc
     1321 tacgtgcgct ggatctggct gggcggcctg atgatgggcc tcggcggtct gctggcggcg
     1381 ctcgacccgc gctaccgggt caaggtgcgc acccgcgtgc gcgatgtgct gggcatgaag
     1441 gaggccaccg catgaagcgc ctgatcctgt tgctgccgct ggcgctgttc ctcggcgtgg
     1501 cggtgtttct gtaccgcggc ctgttcctca acccgcagga gctgccatcg gcactgatcg
     1561 acaagccgct gccggccttc agcctgccgg acctgaagaa cgagcagcgc ctggtcaccg
     1621 agaaggacct caagggcccg gccctggtca acgtctgggc cacctggtgc ccgacctgca
     1681 aggccgagca ccagatgctc aatcgcctgg cccaggccgg cgtgatcatc cacggggtca
     1741 actacaagga cgacggcgag gccgcgcgca agtggctcaa ggactacctc gatccctacc
     1801 aggtcaacat cgccgatccc aagggttcgc tgggcatcaa cctgggcgtc tacggcgcgc
     1861 ccgagacctt cctgatcgac gcccagggca tcatccgcca caagtacgtc ggcgccatcg
     1921 acgaacgtgt ctggcgcgag gaactggcgc cgcgctacca ggcgctgctg gaggacggtc
     1981 agtgaggcgc ctgctgatcg cctgcctgct gggcctgagc ctggtcggcg ccgcccgcgc
     2041 cgccatcgac acctatcagt tcaaggatga ggtcgagcgc gagcgcttcc gcagcctcac
     2101 cgaagagctg cgttgcccca agtgccagaa ccagaacatc gccgactcca acgcgccgat
     2161 cgccaccgac ctgcgccgcg agatctaccg cttgctggaa gag
//
LOCUS       DATIHC010000095         3621 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7212, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000095 DATIHC010000000
VERSION     DATIHC010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3621
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7212"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..631)
                     /locus_tag="VLF16_01595"
     CDS             complement(<1..631)
                     /locus_tag="VLF16_01595"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-32"
                     /protein_id="HSX69598.1"
                     /translation="MTTSLQPVHALVPGANLEAYVHAVNSIPLLSVEQERELAESLYY
                     QQDLEAARQMVLAHLRFVVHIARSYAGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRL
                     VSFAVHWIKAEIHEFILRNWRIVKVATTKAQRKLFFNLRSQKKRLAWLSNDEVHAVAE
                     SLGVEPREVREMESRLSGQDMAFDPAAEDDDESAFKSPANYLEDHRYDPA"
     gene            complement(746..1756)
                     /gene="ftsX"
                     /locus_tag="VLF16_01600"
     CDS             complement(746..1756)
                     /gene="ftsX"
                     /locus_tag="VLF16_01600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003455676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="permease-like cell division protein FtsX"
                     /protein_id="HSX69599.1"
                     /translation="MSEKQRNIKAAERVGAVQSKTDKPIKQGPDFSALFAAWVESHRA
                     SLVDSLARLIGQPIGSFFTCLVMAVALSLPMGLALLLDNVERLGGSWQKAAQISLYLK
                     VEAGDDAGLQLRDEIAAMADVAEAEFIGREAGLAEFEQQSGLGQALRELPENPLPAVV
                     VVTPKEIDKPRLEALRQRLSELPAVDQAQLDLQWVERLTAILGLGDRFVFGLTLLLVM
                     ALLLVIGNTIRLHIENRRSEIEVIKLVGGTDGYVRRPFLYMGALYGLGAGLLAWGLLA
                     FGLDWLNDAVVRLAGLYGSDFALAGVPAGDGFSLLLGAVFLGYIGAWLAVARHLSELA
                     PR"
     gene            complement(1756..2424)
                     /gene="ftsE"
                     /locus_tag="VLF16_01605"
     CDS             complement(1756..2424)
                     /gene="ftsE"
                     /locus_tag="VLF16_01605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017938532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HSX69600.1"
                     /translation="MIRFEQVGKRYPNGHVGLHELSFGVRRGEFLFVTGHSGAGKSTL
                     LRLLLAMERPTSGKLLLAGQDLSQITTAQIPFLRRQIGVVFQNHQLLFDRSVFDNVAL
                     PLQILGLSKPDIAKRVGAALERVSLSDKAEQFPADLSTGQQQRVGIARAVVHRPALLL
                     ADEPTGNLDPRLAAEIMGVFEDINRLGTTVLIASHDLALIARMRHRMLTLQRGRLIGD
                     GEAS"
     gene            complement(2421..>3621)
                     /gene="ftsY"
                     /locus_tag="VLF16_01610"
     CDS             complement(2421..>3621)
                     /gene="ftsY"
                     /locus_tag="VLF16_01610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003297173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HSX69601.1"
                     /translation="PTPDQPHSEPAAAAPEPVEPEPAPAEESVATQATAEAAAPVPSE
                     PAPAVPVPVVQPPIEHLPVVEAQPEPLPVVESAPVQVEQSKPGDNQGGWFARLKQSLS
                     KTSASLGEGMASLFLGKKAIDDDLLDELETRLLMADVGVEATSAIIGSLTKRVARKEL
                     ADSGALYKALQEELGGLLKPVEQPLVVEAGKQPYVILVVGVNGVGKTTTIGKLAKKLQ
                     GEGKKVMLAAGDTFRAAAVEQLQVWGERNNIAVIAQHTGADSASVIFDAVQAAKARGV
                     DVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQTKQF
                     NQAVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFVADDFVQAL
                     FAQKEQG"
BASE COUNT          581 a         1196 c         1222 g          622 t
ORIGIN      
        1 tggccggatc gtagcgatgg tcttccaggt agttggccgg cgacttgaac gcgctttcgt
       61 cgtcgtcctc cgcggccggg tcgaaggcca tgtcctggcc ggaaagccgg ctctccatct
      121 cgcgcacttc gcgcggctct acgcccaggc tctccgccac cgcatgtact tcgtcgttgc
      181 tcagccaggc cagacgcttc ttctggctgc gcaggttgaa gaacagcttg cgctgggcct
      241 tggtggtggc gaccttgacg atgcgccagt tgcgcaggat gaactcgtga atctcggcct
      301 tgatccagtg cacggcgaag gacaccaggc gcacacccat ctccgggttg aagcgcttga
      361 ccgccttcat caggccgaca ttgccttcct ggatcaggtc ggcctgggcc agcccatagc
      421 ctgcgtagct acgggcgatg tgcaccacga aacgcaggtg ggccagcacc atctggcgcg
      481 cggcctcgag gtcctgctgg tagtagagac tctcggccag ctcgcgctcc tgctcgacgg
      541 aaagcagcgg gatgctgttg accgcatgca cgtaagcctc caggttggcg cctgggacta
      601 gggcatggac aggttgcagg gaagtggtca tcaaaaacct ccggtattac agagcggtgc
      661 agtctagcac tgccccttct gagccgggaa cctgtggaaa agttccctta cagttgctca
      721 taaattgatc agaatcaacg cattgctagc gtggcgcgag ctcgctcagg tgacgggcga
      781 cggccagcca ggcgccaata taaccgagga ataccgcgcc caacagcagc gagaatccgt
      841 cgccggcggg tacgccagcc agggcgaaat cgctgccgta gagaccggcc aggcgcacca
      901 ccgcatcgtt caaccagtcc aggccgaagg ccaacaggcc ccaggcgagc aggccggcac
      961 cgagaccgta gagcgcgccc atatagagga agggacgacg cacgtagccg tcggtaccgc
     1021 cgaccagctt gatcacttct atctcgctgc ggcgattctc gatgtgcagg cggatggtgt
     1081 tgccgatcac cagcagcagc gccatcacca gcagcagggt caggccgaag acgaagcggt
     1141 cgcccaggcc gagaatggcg gtcaggcgct ccacccactg caggtcgagc tgcgcctggt
     1201 cgacggcagg cagctcggac aggcgctggc gcagggcctc caggcgcggc ttgtcgatct
     1261 ccttgggcgt caccaccacc accgcgggca gcgggttctc cggcagctcg cgcagcgcct
     1321 ggccgaggcc ggactgctgc tcgaactcgg ctaggccggc ctcgcggccg atgaactcgg
     1381 cctcggccac gtcggccatg gcggcgatct cgtcgcgcag ttgcagacct gcgtcgtcgc
     1441 cggcctccac cttcaggtac agggaaatct gcgcggcctt ctgccaggag ccgccgagac
     1501 gctcgacgtt gtccagcaat agcgccaggc ccatgggcag cgacagcgcc acggccatca
     1561 ccaggcaggt gaagaaactg ccgatcggct ggccgatcag ccgggcgaga ctgtcgacca
     1621 ggctggcacg gtggctctcg acccaggcgg cgaacagggc ggagaagtcc gggccctgct
     1681 tgatcggctt gtcggttttg ctctgcacgg cgccgacgcg ttcggcggcc ttgatgttgc
     1741 gttgcttctc gctcatcagc tggcctcccc gtcgccgatc agtcggccgc gctgcagggt
     1801 cagcatgcgg tgacgcatgc gggcgatcag cgccaggtcg tggctggcga tcagcaccgt
     1861 ggtgccgagg cggttgatgt cctcgaacac gcccatgatc tcggcggcca ggcgcgggtc
     1921 aaggttaccg gtgggctcgt ccgccagcag cagggccggg cgatgcacca cggcgcgggc
     1981 gatgccgacg cgctgctgct ggccggtgga gaggtcggcc ggaaactgct cggccttgtc
     2041 cgacagcgac acacgctcca gcgccgcgcc gacccgcttg gcaatgtccg gcttggacag
     2101 gccgaggatt tgcagcggca gggcgacgtt gtcgaacacc gagcggtcga acagcagctg
     2161 gtgattctgg aacaccacgc cgatctgccg acgcaggaag ggaatctgcg cggtggtgat
     2221 ctgcgacaga tcctggccgg ccagcagcag cttgccgctg gtgggccttt ccatcgccag
     2281 cagcaggcgc agcagggtgg acttgccggc gccggaatgg ccggtgacga agaggaactc
     2341 gccgcggcgc acgccaaaac tcagttcatg caacccgaca tggccgttgg gataccgctt
     2401 gccgacctgc tcgaatcgaa tcatccctgt tccttctgtg caaagagcgc ctggacgaag
     2461 tcgtcggcga cgaaggtgcg cagatcgtcg atgccctcac cgacgccgat gtagcggatc
     2521 ggcaggccga attgcttggc cagggcgaag atcaccccgc ccttggcggt gccgtccagc
     2581 ttggtcaggg ccaggccggt gagggtcacg gcctggttga actgcttggt ctggttgatc
     2641 gcgttctgcc cggtaccggc gtccagcacc agcagcactt cgtgcggcgc ggtctcgtcc
     2701 agcttgccga tgacccgacg gaccttcttc agctcctcca tcaggttgtc cttggtatgc
     2761 aggcgaccgg ccgtgtcggc gatcagcaca tccacaccgc gggccttggc ggcctgtacc
     2821 gcgtcgaaga tcaccgaggc ggagtcggcg ccggtgtgct gggcgatcac cgcgatgttg
     2881 ttgcgttcgc cccacacctg cagctgctcg acggcggcgg cgcggaaggt gtcgccggcg
     2941 gcgagcatga ccttcttgcc ctcgccctgc agcttcttgg ccagcttgcc gatggtggtg
     3001 gtcttgccga cgccattcac gccgaccacc agaatcacgt agggctgttt gcccgcctcg
     3061 accaccagcg gttgctcgac cggcttgagc aggccgccca gttcttcctg cagcgccttg
     3121 tacagcgcac cgctgtcggc cagctccttg cgcgccacgc gcttggtcag gctgccgatg
     3181 atcgcgctgg tggcctcgac gccgacgtcg gccatcaaca gacgggtttc cagctcgtcg
     3241 agcaggtcgt cgtcgatggc cttcttgcca aggaacaggc tggccatgcc ctcgcccagg
     3301 ctcgcgctgg tcttcgacag gctctgtttg agacgggcga accagccgcc ctggttgtcg
     3361 ccgggcttgc tctgctcgac ctgcaccggg gcgctctcga ccacgggcag cggctcgggc
     3421 tgggcctcga ccaccggcag gtgctcgatc ggcggctgca ccaccggcac gggtacggcg
     3481 ggcgcaggct cgctcgggac aggcgcggcg gcctcggccg tggcctgggt ggcgacggat
     3541 tcttccgccg gagcgggctc gggctctacc ggttcgggcg ctgcggcggc cggttcggag
     3601 tggggttgat cgggtgtcgg c
//
LOCUS       DATIHC010000096         1902 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30594, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000096 DATIHC010000000
VERSION     DATIHC010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1902)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1902
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30594"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..942
                     /locus_tag="VLF16_01615"
     CDS             <1..942
                     /locus_tag="VLF16_01615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012018053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HSX69602.1"
                     /translation="AVYGLRSCLTLLVLSAFWLATGWPAASGALLLAAVVCSLFASRE
                     NADLIGMAFMRGIFYALPVAFFVGQVLLPQWNGFPLLCLALGVPLFFGLLAMAKPALA
                     GAATSFCLHFIVLCAPRNDMVYDVAFFLNEALAMLIGVGCAVLALRLIVLRNPVWHGR
                     RLLRATLDDLARLCSRSLGGAENWFGGRMADRLLQLARFYPQLPEGGRSRWDDGIDSL
                     DLGDELLHLRACLAAAPSAPRQAERRFFEEAGAVLRQGPAPTRGEALEAPAQAFARAL
                     RDQPPAVELSLAEAALLQLTHSWRHWCARQGENHGAA"
     gene            929..1135
                     /locus_tag="VLF16_01620"
     CDS             929..1135
                     /locus_tag="VLF16_01620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003455080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1656 domain-containing protein"
                     /protein_id="HSX69603.1"
                     /translation="MELREWTLGGVLLSPMLVYALLALLLTGVLRLGLQRAGLARWIW
                     HEALFDCALYVCVLAGLVALLASW"
     gene            1146..>1902
                     /locus_tag="VLF16_01625"
     CDS             1146..>1902
                     /locus_tag="VLF16_01625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013714682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HSX69604.1"
                     /translation="MRALPRMMLTMVVVAVALLAGWWLWQFYMLSPWTRDARVRADVV
                     TIAPDVSGWVVELKVRDNQQVKAGDLLMSIDRERYQAALNKARALAETRRQQLNLRQH
                     EASRRAHLGPQAISAELRENAQINASIARAELQQAEAEVELAELNLRRSEVRAPRAGQ
                     VTNLHLAQGNYVQAGQAVMALVADDSFYVQAYFEETKLPGIRVGAPAEVTLMSGGEPL
                     KARVQSISRGITDRNAAPDAQLLANVEPTFNWVR"
BASE COUNT          250 a          651 c          689 g          312 t
ORIGIN      
        1 gccgtatacg gcctgcgcag ttgcctgacc ctgctggtgc tgtcggcctt ctggctggcc
       61 accggctggc cggccgccag cggcgcgctg ctgctggccg cggtggtgtg cagcctgttc
      121 gccagccgcg agaacgccga cctgatcggc atggccttca tgcgcggcat cttctatgcg
      181 ttgccggtgg ccttcttcgt cgggcaggtg ttgctaccgc agtggaacgg cttcccgttg
      241 ctctgcctgg ccctcggcgt accgctgttc ttcggcctgc tggcgatggc gaagccggcc
      301 ctggcgggcg ccgccacctc cttctgcctg cacttcatcg tgctctgcgc gccacgcaac
      361 gacatggttt acgacgtcgc cttcttcctc aacgaggcgt tggcaatgct gatcggcgtt
      421 ggttgcgcgg tgctggcgct gcgtctgatc gtgctgcgca acccggtgtg gcacggtcgg
      481 cgcctgctca gggcgaccct cgacgacctg gcgcggctct gctcgcgcag cctgggcggc
      541 gcggaaaact ggttcggcgg gcgcatggcc gaccgcctgt tgcagctggc gcgcttctac
      601 ccgcaactgc cggagggtgg ccgcagccgc tgggacgatg gcatcgacag cctcgacctg
      661 ggcgacgagc tgctccacct gcgggcctgt ctggcggccg cgcccagcgc gccgcgccag
      721 gccgagcggc gtttcttcga agaggcgggc gcggtactgc gtcagggccc ggcgccgacg
      781 cgcggcgagg cgctggaggc gccggcccag gcgttcgcgc gggccctgcg cgaccagcca
      841 ccggcggtcg aactgagcct ggccgaggcc gctctactgc aactcaccca cagctggcgg
      901 cactggtgcg cgcggcaagg agagaaccat ggagctgcgt gaatggacgc tgggcggcgt
      961 gctgctcagc cccatgctgg tgtatgcgct gctggcgctg ctgctgaccg gcgtgctgcg
     1021 cctgggcctg cagcgtgccg gcctggcgcg ctggatctgg cacgaggcgc tgttcgactg
     1081 cgccctgtat gtctgcgtgc tggcggggct cgtggccctg ctggcgagct ggtgaggagt
     1141 ctgtgatgcg tgcgttgccc cgaatgatgc tgacgatggt ggtggtcgcg gtcgcgctgc
     1201 tggccgggtg gtggctgtgg cagttctaca tgctgtcgcc ctggacccgc gacgcccgcg
     1261 tgcgcgccga cgtggtcacc attgcgccgg acgtgtccgg ctgggtggtc gagctcaagg
     1321 tgcgcgacaa ccagcaggtc aaggccggcg acctgctcat gagcatcgac cgcgagcgct
     1381 accaggcggc gctgaacaag gcccgcgccc tggccgaaac ccgtcgacag caactcaacc
     1441 tgcgccagca cgaggcctcg cgccgcgcgc acctagggcc ccaagcgatc agcgcggagc
     1501 tgcgcgagaa cgcgcagatc aacgcatcca tcgcccgcgc cgaactgcag caggccgagg
     1561 cggaggtcga gttggccgag ctcaacctgc gccgcagcga ggtgcgcgcg ccgcgcgcgg
     1621 gccaggtcac taacctgcac ttggcccagg gcaactacgt gcaggccggc caggcggtta
     1681 tggccctggt ggcggacgat tcgttctatg tgcaggccta tttcgaggag accaaactgc
     1741 cgggcatccg cgtcggcgcg ccggcggaag tgaccctgat gagcggcggc gagccgctga
     1801 aggcgagggt gcagagcatc agccgcggca tcaccgaccg caacgccgcg cccgatgcgc
     1861 agctgctggc caacgtcgag ccgaccttca actgggtacg cc
//
LOCUS       DATIHC010000097         3406 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_44471, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000097 DATIHC010000000
VERSION     DATIHC010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3406)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3406)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3406
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44471"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1000
                     /locus_tag="VLF16_01630"
     CDS             <1..1000
                     /locus_tag="VLF16_01630"
                     /inference="COORDINATES: protein motif:HMM:NF012245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSX69605.1"
                     /translation="FSPAALALQVSPWLLVGLGAWGGLPLWICLFCGLCLSLGLLPAL
                     ATATHWRALMQPRPAVVETPPWLASLGEELESLCAHQRERIERLHEELQSAQSQRQLH
                     WQALQNGLHEHAEAAATLLAALPQDGDEFSEAQQALDTLLERQRQTGAQADALAERLR
                     GIAQQAETILRATDDMDAIAKQTNLLALNAAIEAARAGDSGRGFAVVADEVRALSSRS
                     TDFSLAIRGTVAEMLEALRQADDQAARLSHADATTGDEAQRLIAARLSGLNEDGTRAR
                     EIAGQLAERAQALPGALAPLPPERDDLLGELTQHSHALNELATRLRSAASSTTPAA"
     gene            1103..2461
                     /locus_tag="VLF16_01635"
     CDS             1103..2461
                     /locus_tag="VLF16_01635"
                     /inference="COORDINATES: protein motif:HMM:NF041518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CSLREA domain-containing protein"
                     /protein_id="HSX69606.1"
                     /translation="MPASRLPLSCPLGLLACLALPALAQQLSVTTTADEFDGACTAQH
                     CSLREAIAAANATPDAPTSIRLPAGTYPLSQPNGNDDQGLPIDENANRVGDFDLLGQI
                     TLLGAGADQTLIDGGRSDRLIDVQPGADVELRGLTLTRGGTLYDGGGIRNHGTLRLME
                     VTLLDNRAYAHIDNVQSRGGALANFATAQLHHVRAEGNAVDGGYMTMGQGGALFNAGT
                     LQVRDSRIEYNRCGDYHEVGMGCGLYNQGTADLARVALNGNRAMPFGIGGAIFNRGTL
                     TLANSTLSNNYSGKGAALDNGDRYNPQPTGTPYATLVHVTIADNDGYGLLNVDGTVSL
                     RNAIIAGNQQRETGEPRNCHSQATAVAMHTRGLLLGSDAGNCTGSISVDNGQVLLREL
                     FPLAENNGTPAHALRRTSAALDSAEGSCPRHDQRRLTRPRDGDGDGIAHCDLGAFERA
                     GP"
     gene            complement(2634..>3406)
                     /gene="rlmJ"
                     /locus_tag="VLF16_01640"
     CDS             complement(2634..>3406)
                     /gene="rlmJ"
                     /locus_tag="VLF16_01640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003282608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HSX69607.1"
                     /translation="RIIALLSRKEAPFAYLDSHAGVGLYDLQGDQATRTGEWLEGIAR
                     LWDAPDLPDSTSDYFGVLRTLNPDGALRYYPGSPELARQLTRDHDRVLLNEKHPEDGQ
                     LLKDNMKGDRRVAVHLGEGWHVPRALLPAAEKRALLLIDPPFEKADELERCVTALDEA
                     IGRMRQTVVAIWYPIKDERQLKRFYQGLEKSSAPKLLRVELFVHAPDDANRLAGSGLA
                     LANAPWGLEDELKQLLPWLAGKLAQSQGSFRLDWLIAD"
BASE COUNT          547 a         1274 c         1130 g          455 t
ORIGIN      
        1 cttcagcccc gccgcgctgg ccctacaggt ctcgccctgg ctgttggtcg gcctcggcgc
       61 ctggggcggc ctgccgctgt ggatctgcct gttctgcggc ctgtgcctga gcctcggcct
      121 gctgcccgcg ctggccaccg ccacccattg gcgcgcgctg atgcagccgc ggccggccgt
      181 cgtcgagacg ccgccctggc tcgccagcct gggcgaagaa ctggaaagcc tctgcgccca
      241 ccagcgcgag cgcatcgagc gcctgcacga ggagctgcag tccgcgcagt cgcagcgcca
      301 gctccattgg caggcgctgc agaacggtct gcacgaacac gccgaggcgg cggccacgct
      361 gctcgctgcg ctgccgcagg acggcgacga attctccgag gcccaacagg cgctggacac
      421 cctgctcgag cggcagcgcc agaccggcgc gcaggccgat gccctggccg agcgcctgcg
      481 cggcatcgcc cagcaggccg agaccatcct gcgcgccacc gatgacatgg acgcgattgc
      541 caagcagacc aacctactgg ccctgaatgc cgccatcgag gcggcgcggg ccggcgacag
      601 cgggcgcggc ttcgccgtgg tggccgacga ggtgcgcgcg ctgtcgagcc gttccaccga
      661 cttctccctg gccatccgcg gcacggtggc cgagatgctc gaggcgctgc ggcaggccga
      721 cgatcaggcc gcgcgcctga gtcatgccga tgcgacgacc ggcgacgagg cgcagcggct
      781 gatcgccgcc cggctcagcg ggctgaacga ggacggcaca cgcgcacggg agatcgccgg
      841 ccaactggcc gagcgcgccc aggcgctgcc cggtgcgctc gcgccgcttc cgccggagcg
      901 cgacgacctc ctcggcgagc tgacccagca ctcacacgcg ctgaacgaac tggccacgcg
      961 cctgcgctcg gcagcctcga gcaccacacc tgcggcctga accgccgagc ggtcgactcg
     1021 cggcgtggca gaaccggcga gcccccgcta aggtcaactc gctgaaccga gcagtccccg
     1081 tccaccgcac acgaggtctg ccatgcccgc ctcccgcctt cccctgtcct gtccgctcgg
     1141 cctgctggcc tgcctggcac tgccggccct ggcccagcaa ctgagcgtca ccaccaccgc
     1201 cgacgaattc gatggcgcct gcaccgcgca gcactgctcc ctgcgcgagg ccatcgccgc
     1261 cgccaatgcc acaccggacg caccgacctc gatccggctt cccgccggca cctacccgct
     1321 gagccagccc aacggcaacg acgaccaggg tctgccgatc gacgagaacg ccaatcgcgt
     1381 cggcgatttc gacctcctcg gccagatcac cctgctcggc gccggcgcgg atcagacgct
     1441 gatcgacggt ggacgaagcg accgtctcat cgacgtccag cccggcgccg atgtcgaact
     1501 gcgcggcctg accctgaccc ggggcggcac gctgtacgac ggcggtggca tccgcaatca
     1561 cggcaccctg cggctgatgg aggtgaccct gctcgacaac cgtgcctatg cccacatcga
     1621 caatgtgcag agccgtggcg gggcgctggc caacttcgcc acggcgcagc tgcaccacgt
     1681 gcgcgccgaa ggcaacgcgg tggacggcgg ctacatgacc atgggccagg gcggcgccct
     1741 gttcaacgcc ggcacgctgc aggtacgcga cagccgcatc gaatacaacc gctgcggcga
     1801 ctaccacgag gtgggcatgg gctgtggcct ctacaaccag ggcaccgcgg acctggcgcg
     1861 cgtcgcgctg aacggcaacc gcgccatgcc gttcggcatc ggcggagcca tcttcaatcg
     1921 gggcaccctg accctggcca acagcaccct cagcaacaac tacagcggca agggcgccgc
     1981 gctggacaac ggcgaccgct acaacccgca accgaccggc accccctacg ccacgctggt
     2041 gcatgtgacc atcgccgaca acgacggcta cggcctgctc aacgtcgacg gcacggtcag
     2101 cctgcgcaac gcgatcatcg ccggcaacca acagcgcgag accggcgagc cgcgcaattg
     2161 ccacagccag gcgaccgccg tcgccatgca cacccgcggc ctgctgctgg gcagcgatgc
     2221 cggcaactgc accggcagca tcagcgtgga caacggtcag gtgctgctgc gcgaactgtt
     2281 cccgctggcg gagaacaacg gcaccccggc ccacgccctg cgccgcacca gcgccgccct
     2341 cgacagcgcc gaggggagct gcccgcggca cgaccagcgg cgcctgaccc gaccgcgcga
     2401 tggcgacggc gacggcatcg cccactgcga tctgggcgcc ttcgagcgcg ccggaccttg
     2461 agacccattg acgatctcgc caaccggcgc ccgcttaccc cattggtgga aaatgcttcg
     2521 cagttttcca ctcaagcctg ctggcctgta gggtggatga cgctttgctt atccacccgc
     2581 tcgtgcggtg cgcggaaagg ccgtgaacag gctcgaaaga agacgggcaa cggtcagtcg
     2641 gcgatcagcc agtccaggcg gaagctgccc tggctctgcg ccagcttgcc ggccagccac
     2701 ggcagcagct gcttcagctc gtcctccagc ccccagggcg cgttggcgag ggccaggccg
     2761 gaaccggcaa ggcggttggc atcgtccggc gcgtggacga acagctcgac gcgcagcagc
     2821 ttgggtgcgc tggatttctc caggccctgg tagaagcgct tgagctggcg ctcgtccttg
     2881 atcgggtacc agatggcgac cacggtctgg cgcatgcggc cgatggcctc gtcgagtgcg
     2941 gtgacgcagc gctccagctc gtcggccttc tcgaacggcg ggtcgatcag cagcagcgcg
     3001 cgcttttccg ccgccggcag cagggcgcgc ggcacgtgcc agccctcgcc caggtgcacg
     3061 gccacgcggc ggtcgccctt catattgtct ttcagcagct gaccgtcttc cgggtgcttc
     3121 tcgttgagca gcacgcggtc atggtcgcgg gtcagctggc gcgccagctc cggcgagccg
     3181 gggtaatagc gcagcgcacc gtccggattg agcgtgcgaa gtacgccgaa gtagtcggag
     3241 gtggaatcgg gcaggtccgg cgcgtcccac aggcgggcga tgccctccag ccactcgccg
     3301 gtgcgggtcg cctggtcgcc ctgcaggtca tagaggccga cgccggcatg gctgtcgagg
     3361 taggcgaacg gcgcctcctt gcgcgacagc agggcgatga tgcggc
//
LOCUS       DATIHC010000098         1800 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_32961, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000098 DATIHC010000000
VERSION     DATIHC010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1800)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1800)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1800
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32961"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(18..803)
                     /locus_tag="VLF16_01645"
     CDS             complement(18..803)
                     /locus_tag="VLF16_01645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003246479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSX69608.1"
                     /translation="MRREPIVLFDNGTHQCLMFDDLVSGEGVQSNQFLIIDHEQYLLL
                     DPGGDLTYTPLSLELSKHIPVQALTYIFASHQDPDIIASLDKWLLHTRARVICSKLWA
                     RFLPHLTANYLSLSHGICTYDRIIALPDRGQSIALGRCQLKAVPAHFLHSVGNFQLYD
                     PVSKILFSGDMGASMVDDASPVQDFAAHVPNMAGFHRRYMASNKACRFWVQMVREMDV
                     AMIVPQHGRPFVGAEMINAFLEWIEQLECGLDLMTQQDYRLPD"
     gene            complement(885..1013)
                     /locus_tag="VLF16_01650"
     CDS             complement(885..1013)
                     /locus_tag="VLF16_01650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69609.1"
                     /translation="MADESVIRPTWLELARTAREKRLEKAAALLLQRPGLSRGERR"
     gene            complement(1050..>1800)
                     /locus_tag="VLF16_01655"
     CDS             complement(1050..>1800)
                     /locus_tag="VLF16_01655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003451430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HSX69610.1"
                     /translation="LAATPGLAFLAGYQGALRALWPAAPRSLGALCVTENRSTRPADL
                     QTRLSGLHLSGRKDFVTAAEAADWLLVAARVDADESPRLAVGVVRSGAPGARLEPLPA
                     LPLMPDIGHARLHLDNVHCELLPGDGWDSYVKPFRSIEDLHVLAAIAAWLYGVGQDGD
                     WPRDLRLRLLGLLAGCAEVVRHGAAEPASHLLLAGLFAQFQALRPELDAAIAAGPQPW
                     AAMWARDCNLLELARTAREKRLEKAHAALQL"
BASE COUNT          272 a          590 c          682 g          256 t
ORIGIN      
        1 ggctcgcggc cggcggctca gtccggcagg cggtagtcct gctgggtcat caggtccagg
       61 ccgcactcga gctgctcgat ccactcgaga aaggcgttga tcatctccgc gcccacgaac
      121 ggccggccgt gctgcggcac gatcatcgcc acgtccatct cgcgcaccat ctgcacccag
      181 aagcggcagg ccttgttgct ggccatgtag cggcggtgga agccggccat gttcggcacg
      241 tgggcggcga agtcctgcac cgggctggcg tcgtcgacca tggaggcgcc catgtcgccg
      301 gagaagagga tcttgctcac cgggtcgtac agctggaagt tgcccaccga gtgcaggaag
      361 tgcgccggca cggccttgag ctggcagcgg ccgagggcga tggactgacc gcggtccggc
      421 agcgcgatga tgcggtcgta ggtgcagatg ccgtggctca gcgacaggta gttggcggtg
      481 aggtgcggca ggaagcgcgc ccacagcttg gagcagatca cccgggcgcg ggtgtgcagc
      541 agccacttgt ccagcgaggc gatgatgtcc gggtcctggt gcgaggcgaa gatgtaggtc
      601 agcgcctgca ccggaatgtg cttggagagc tccagcgaca gcggggtgta ggtcaggtcg
      661 ccgcccggat cgagcagcag gtactgctcg tgatcgatga tgaggaactg gttggattgc
      721 acgccttcgc cgctgaccag gtcatcgaac atcaggcatt ggtgggtgcc gttatcgaac
      781 agcacgatgg gctcgcggcg catggatacc tcggaggaaa aacgcgcggc gagcttaggg
      841 ccatgggcga ttgcgcatac tgacgtgggt caagcgcggc gaggttagcg cctctccccg
      901 cgggagaggc cgggccgctg gagcagcagc gccgcggcct tttccagacg cttctcgcgg
      961 gccgtgcggg ccagctccag ccacgtaggg cggatgacgc tctcatccgc catggccccg
     1021 cgcggtggat cgatgaagcg cgacccaccc tacagctgca gtgctgcgtg ggctttttcc
     1081 aggcgcttct cgcgggccgt gcgggccagc tccagcaggt tgcagtcgcg tgcccacatc
     1141 gcggcccagg gctgcgggcc ggcggcgatg gcggcgtcca gctccgggcg cagggcctgg
     1201 aactgggcga acaggccggc cagcagcagg tggctggccg gctcggctgc gccgtggcga
     1261 accacctcgg cgcagccggc gagcaggccg agcagacgca ggcgcaggtc gcgcggccag
     1321 tcgccgtcct ggccgacgcc gtacagccag gcggcgatgg cggccagcac gtgcaggtcc
     1381 tcgatgctgc ggaacggctt gacgtagctg tcccagccgt cgcccggcag caactcgcag
     1441 tgcacattgt ccaggtgcag gcgggcgtgg ccgatgtccg gcatcagcgg cagcgcgggc
     1501 agcggctcga ggcgcgcgcc cggtgcaccg ctgcgcacca cgcccacggc caggcgcggg
     1561 gattcgtcgg cgtccacccg cgcggccacc agcagccagt cggccgcctc ggcggcggtg
     1621 acgaagtcct tgcgcccgga caggtgcagg ccgctcaggc gggtctgcag gtccgccggg
     1681 cgggtgctgc ggttctcggt cacgcacagc gcgccgaggc tgcgcggcgc cgccggccac
     1741 agcgcgcgca gggcgccctg gtagccggcg agaaaggcca gccccggcgt ggcggccagg
//
LOCUS       DATIHC010000099         2676 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_32970, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000099 DATIHC010000000
VERSION     DATIHC010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2676)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2676
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32970"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..974
                     /locus_tag="VLF16_01660"
     CDS             <1..974
                     /locus_tag="VLF16_01660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HSX69611.1"
                     /translation="RALEQRGLAREVSALRRQLAGRQALEQRIIGRSPAMQRLRELIA
                     NVADTGANVLIEGETGTGKELVARCLHDFSRRQDKEFVALNCGGLPESLFESEIFGHE
                     ANAFTGAGKRRIGKIEHADGGSLFLDEIESMPLALQIKLLRVLQEHSLERLGSNQPIA
                     VDCRVIAATKADLAELGKRGEFRSDLYYRLNVVSLELPPLRERREDILLLFQHFLQQS
                     ALRFDRPPQELDRTTTAALLAHDWPGNVRELRNVAERFALGLPVFKHSDATPDGSGAS
                     FAEAVEAFERNLLGAALERHAGNLSQAAQALGMAKTTLFDKVKKYGL"
     gene            complement(1416..2324)
                     /locus_tag="VLF16_01665"
     CDS             complement(1416..2324)
                     /locus_tag="VLF16_01665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HSX69612.1"
                     /translation="MNLETKWLEDFVALAATRSFSQAAQRRFVTQPAFSRRIRSLEAA
                     LGLTLVNRSRTPVELTESGQLFLVTARSMVEQLGEVVRHLHHLEGQQGEVLQIAAAHS
                     LTLGFFPEWIGRLRRDGLPLSTRLVATNVGEAVHSLREGSCDLILAYYDPDAAMQLTA
                     DIFPSLHLGDTAMLPVCAVGEDGAPLFDLESGQTVPLLAYSAGAFLGRSVNQLLRQRA
                     LRSTTVYETAMADSLKTMALQGLGVAWVPRLSVTAELARGELAVCGGEQWQVPLEIRL
                     YRCVLSRKAAIRLLWRKLEAGVGAGE"
BASE COUNT          460 a          993 c          836 g          387 t
ORIGIN      
        1 gccgcgcgct ggaacagcgt ggcctggccc gcgaggtcag cgccctgcgc cgccaactgg
       61 ccgggcgcca ggctctcgag cagcgcatca tcggccgctc gccggccatg cagcgcctgc
      121 gcgaactgat cgccaacgtc gccgacaccg gcgccaacgt gctgatcgaa ggcgagaccg
      181 gcaccggcaa ggagctggtc gcccgctgcc tgcacgactt cagccggcgc caggacaagg
      241 agttcgtcgc ccttaactgc ggcggcctgc cggagagcct gttcgagagc gagatcttcg
      301 gccacgaggc caacgccttc accggcgccg gcaagcggcg catcggcaag atcgagcacg
      361 ccgacggcgg ctcgctgttc ctcgacgaga tcgagagcat gccgctggcc ctgcagatca
      421 agctgctgcg ggtgctgcag gaacacagcc tggagcgcct cggctcgaac cagccgatcg
      481 ccgtggactg tcgggtgatc gccgcgacca aggccgacct ggccgagctg ggcaagcgcg
      541 gcgagttccg cagcgacctc tactaccggc tcaacgtggt cagcctggaa ctgccgccgc
      601 tgcgcgagcg gcgcgaggac atcttgctac tgttccagca cttcctgcag cagtccgccc
      661 tgcgcttcga ccgcccgccg caggagctcg accgcaccac caccgccgcc ctgctagccc
      721 acgactggcc gggcaacgtg cgcgaactgc gcaacgtggc cgaacgcttc gccctcggtc
      781 tgccggtatt caagcacagc gacgccacgc cagacggcag cggcgcgagc ttcgccgagg
      841 cggtcgaggc cttcgagcgc aacctgctcg gcgccgccct ggaacgccac gccggcaacc
      901 tcagccaggc cgcccaggcc ctgggcatgg ccaagaccac gctgttcgac aaggtgaaga
      961 agtacgggct gtaggggcgt tttttgctcc gtctcctctt tcacgggcca ggcgagtcgg
     1021 tcgtcagcac gctcggcctt ccctctcccc cagcccctct cccacaggtg ggagagggga
     1081 gccaccccag ggccaccctg cgcaccgtag ggcggtctcg agagcgaagc gaacagcccg
     1141 ccgctcgtgc aattcccgcc agccctcgcc gtcgcccgca tcgcctctta tcaaacgccc
     1201 ggatggtgca ccgcttatgg cgagtgcacc tacacaccgc cctgccgtat accggccgca
     1261 actccgaact tcgtagggcg gtctcaggag cgaagcgaac agcccgccgc tctacggtgt
     1321 cccgccaaac tccccgccct cgcccgaatc gcctcccaca aaacgcttaa gcggtgccct
     1381 gtcttcgccg acagagccaa ccctaccccg cagcctcact ctcccgcccc tacccccgcc
     1441 tccagcttgc gccacagcag gcgtatcgcc gccttgcgag acagcacgca gcggtacagg
     1501 cggatctcca gcggcacctg ccactgctcg ccgccgcaca ccgccagctc gccgcgggcc
     1561 agttcggcgg tcaccgacag acgcggcacc caggccacgc cgaggccctg caaggccatg
     1621 gtcttgaggc tgtcggccat ggccgtctcg tacaccgtgg tcgagcgcag ggcgcgctgg
     1681 cgcagcagct ggttcaccga gcggccgagg aaggcgccgg cgctgtaggc cagcagcggc
     1741 acggtctggc cactttccag atcgaacagc ggcgcaccgt cttcacccac cgcgcacacc
     1801 ggcagcatgg ccgtgtcgcc caggtgcagc gagggaaaga tgtcggcggt cagctgcatc
     1861 gccgcgtccg ggtcgtagta ggcgaggatc aggtcgcagc ttccctcgcg caacgaatgc
     1921 accgcctcgc cgacgttggt cgccaccagg cgggtggaga gcggcaggcc gtcgcggcgc
     1981 aggcggccga tccattccgg gaagaagccc agggtcagcg agtgggcggc ggcgatctgc
     2041 agcacctcgc cctgctggcc ctccagatgg tgcaggtgcc gcaccacctc gccgagctgc
     2101 tcgaccatgc tgcgcgcggt gaccaggaac agctggccgg actcggtcag ctccaccggt
     2161 gtgcgcgagc ggttgaccag ggtcaggccc agcgccgcct ccaggctgcg gatgcgccgg
     2221 ctgaaggccg gctgggtgac gaagcgcctc tgcgccgcct gggaaaaact gcgggtagcg
     2281 gccagggcga cgaagtcttc cagccatttg gtttccaggt tcatccgttc tccaacatgc
     2341 cttcactgca gtgcgcgccg cgtgccacat ccaactcttg gtgcgcatgg cgcaccctac
     2401 cgggtcgtgg cacctcgccc tcgggcgcaa tgcagacgag cgatcaggcc cggcgccggc
     2461 gttctaaatt atgcacgcgc gacatcaaac ccgagtcacc gcgacattat gccgatcgtg
     2521 cataccatag cgtttaacag cattggccga caaacaggct cacgccccat catatggtac
     2581 gtcgcggcgc caagccgttt ttccgagaaa tgacacatca tgtccgctgc tgcatccacc
     2641 cgcgtcgaaa aagacctgct cggcaagctc gaaatc
//
LOCUS       DATIHC010000100         1717 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35417, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000100 DATIHC010000000
VERSION     DATIHC010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1717)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1717)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1717
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35417"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..190
                     /locus_tag="VLF16_01670"
     CDS             <1..190
                     /locus_tag="VLF16_01670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014854370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="efflux transporter periplasmic adaptor subunit"
                     /protein_id="HSX69613.1"
                     /translation="SYTVQVLGRGGKVEERQIRTGLEDSINAQVVDGLALGDKVVLGD
                     AAAGSSTTLRRRGPGMRL"
     gene            192..>1717
                     /locus_tag="VLF16_01675"
     CDS             192..>1717
                     /locus_tag="VLF16_01675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005044812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSX69614.1"
                     /translation="MALLELRGLRREFPAGEQTVAVLKDVDLAVEQGEMVAIIGASGS
                     GKSTLMNILGCLDRPSAGTYRIAGRETGQLDADELAELRREYFGFIFQRYHLLGDLDA
                     VGNVEVPAIYSGKDAASRRQRAEALLQRLGLGERLGHRPSQLSGGQQQRVSIARALMN
                     GGQVILADEPTGALDSHSGEEMLKLLRELHAAGHTVIIVTHDMKVAETADRIIEISDG
                     QIIADRRLRNSANEVRALEEPAQAREANSLRASFGQFREALRMALLAMLSHKLRTFLT
                     MLGIIIGIASVVSVVALGQGSQQKIMENISAIGTNTIDIFPGSGFGDRRSARIQTLVP
                     ADADALAGQAFVDSVTPSVSNSGTLRYRDQALTVSMSGVGEQFFRAKGYTFAQGRAFD
                     ARAVRESAQDAVIDDNSYKKLFAGKQALGEVILLGNVPVRIIGVLEPIQSNFGGSDQL
                     RVYLPYTAVMNRMLGQSYLQSITVRVDDSVSSDAAEQGIIRLLKRRHGVQDFFAMNTD
                     T"
BASE COUNT          287 a          615 c          566 g          249 t
ORIGIN      
        1 cagctacacc gtgcaggtgc tcggccgcgg cggcaaggtc gaggagcggc agatccgcac
       61 cggcctggag gactcgatca acgcccaggt cgtcgatggc ctggcgctgg gtgacaaggt
      121 cgtgctcggc gatgccgctg ccggctccag caccaccctg cgcaggcgtg gcccggggat
      181 gaggctgtga catggcactg ctagaactgc gtggcctgcg ccgcgaattc cccgctggcg
      241 agcagaccgt tgccgtactc aaggatgtcg acctggccgt cgagcagggc gagatggtcg
      301 ccatcatcgg cgcatccggc tcgggcaagt ccaccctgat gaacatcctc ggctgcctcg
      361 accggccgag cgccggcacc taccgcatcg ccggccgcga gaccggccag ctggatgccg
      421 acgagctggc cgagctgcgc cgcgagtact tcggtttcat cttccagcgc taccacctgc
      481 tcggcgatct cgacgcggtg ggcaacgtgg aggtgccggc gatctattcc ggcaaggacg
      541 cggccagccg ccgccagcgc gccgaagcgc tgctgcagcg cctgggcctg ggcgagcgcc
      601 tcggccaccg ccccagccag ctctccggcg gccagcagca gcgggtgtcg atcgcccgcg
      661 ccttgatgaa cggcggccag gtgatcctcg ccgacgaacc caccggcgcg ctggacagcc
      721 acagcggcga ggagatgctc aagctgctgc gcgaactgca cgccgccggg cacacggtga
      781 tcatcgtcac ccatgacatg aaggtggcgg aaaccgccga ccgcatcatc gagatcagcg
      841 acggtcagat catcgccgac cgccgcctgc gcaacagcgc gaacgaggtg cgcgcgctcg
      901 aggagccggc ccaggcccgc gaagccaact ccctgcgcgc cagcttcggc cagttccgcg
      961 aggccttgcg catggccctg ctggccatgc tctcgcacaa gctgcgcacc ttcctgacca
     1021 tgctcggcat catcatcggc atcgcctcgg tggtctcggt ggtcgccctc ggccagggtt
     1081 cgcagcagaa gatcatggag aacatcagcg ccatcggcac caacaccatc gacatcttcc
     1141 ccggcagcgg cttcggcgat cgccgctcgg cgcgcatcca gaccctggtg ccggccgatg
     1201 ccgacgccct ggccggccag gccttcgtcg acagcgtcac gccgtcggtg tccaactccg
     1261 gcaccctgcg ctaccgcgac caggcgctga ccgtgtcgat gagcggggtc ggcgagcagt
     1321 tcttccgcgc caagggctac accttcgccc agggtcgcgc cttcgatgcc agggcggtgc
     1381 gcgagtcggc gcaggacgcg gtgatcgacg acaacagcta caagaagctg ttcgccggca
     1441 agcaggcgct cggcgaggtg atcctcctgg ggaacgtgcc ggtgcgcatc atcggcgtgc
     1501 tcgagccgat ccagagcaac ttcggcggca gcgatcagct gcgcgtgtac ctgccctaca
     1561 ccgcggtgat gaaccgcatg ctcggccagt cgtacctgca aagcatcacc gtgcgggtcg
     1621 acgacagcgt gtccagcgac gccgccgagc agggcatcat ccgcctgctc aagcgccgtc
     1681 acggggtgca ggacttcttc gcgatgaaca ccgatac
//
LOCUS       DATIHC010000101         1524 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18920, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000101 DATIHC010000000
VERSION     DATIHC010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1524
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18920"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..391)
                     /locus_tag="VLF16_01680"
     CDS             complement(<1..391)
                     /locus_tag="VLF16_01680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69615.1"
                     /translation="MKNFRLAAALLLAPLYAQAHTFVVVTDATTDGQLPIRVLMTEKL
                     FEGDRLLKAEDVSLRLIDGENEQRIPLSADSQAKALRGSIAAPTGSALLAARTAPRYR
                     AIEKGQQTEDPAKTLRMESFAKSLIGVT"
     gene            complement(401..724)
                     /locus_tag="VLF16_01685"
     CDS             complement(401..724)
                     /locus_tag="VLF16_01685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014854082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3325 domain-containing protein"
                     /protein_id="HSX69616.1"
                     /translation="MIELSLALCFSGFGAICLGLDRHHEQVFGRKPQTRRRQLLRALG
                     WLLLACAVAPAIARLGPSIGIALWASALTLAAAAQVLLLSYRPRAIPSLSLLAPLLAL
                     PFTLM"
     gene            complement(721..>1524)
                     /locus_tag="VLF16_01690"
     CDS             complement(721..>1524)
                     /locus_tag="VLF16_01690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014854081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-associated TM helix domain-containing
                     protein"
                     /protein_id="HSX69617.1"
                     /translation="RQWPQGVASVQVVAPGTRQAVIELRERGGDSLLERGNGERLRFD
                     GVTGAPLSSPPAAEVNAASATYNVFTGLHLIRFAGPPLRWFFFLSGLLGTAMIATGLV
                     LWVVKRLPERQKLGRTPLGHRLVEVLNIGTVAGLPLAIAAYFWANRLLPVDLAQRADW
                     EIRGFFLAWLLCLLHPLLRTHRQAWVEQLLLAAVLFAGLPLFNLGLSHSGLITTLPDA
                     NWLLAGMDLVLLASAALLGYAAWKVRHHQPARSPQRQPRQPRAGKEATA"
BASE COUNT          228 a          500 c          581 g          215 t
ORIGIN      
        1 gcgtgacgcc gatcaggctc ttggcgaagg actccatgcg cagggtcttg gccggatctt
       61 cggtctgctg gcccttctcg atggcgcgat agcgcggcgc cgtgcgggcc gcgagcaagg
      121 cgctgccggt gggcgcggcg atgctgccgc gcagggcctt ggcctggctg tcggcgctga
      181 gcgggatgcg ctgctcgttt tccccgtcga tcaggcgcag gctgacgtcc tctgccttca
      241 gcagccggtc gccctcgaag agcttctcgg tcatcagcac gcggatgggc aactggccgt
      301 ccgtggtggc gtcggtcacc accacgaagg tgtgggcctg ggcgtagagc ggggccagca
      361 gcagggctgc ggcgaggcga aagttcttca tcgtggttcc ttacatcagg gtgaagggca
      421 gcgccagcag tggcgccagg aggctcaggg acgggatcgc ccgcggccgg tagctcagca
      481 gcagcacctg agcggcggcg gccagggtca gggccgaggc ccacagggcg atgccgatgg
      541 aggggccgag gcgagcgatg gccggggcga cggcgcaggc cagcaatagc catccgagtg
      601 ctcgcagcag ctggcgccgg cgcgtctggg gcttgcgtcc gaagacctgt tcatggtgcc
      661 ggtcgaggcc caggcagatc gcaccgaagc cgctgaagca caaggccagg ctgagttcga
      721 tcatgcggtg gcctccttgc cggcccgcgg ctggcgcggt tgccgctgcg ggctgcgcgc
      781 cggctggtgg tggcgcacct tccatgccgc gtagccgagc agcgcggcgc tcgccagcag
      841 gacgaggtcc atgccggcca gcagccagtt ggcgtcgggc agagtggtga ttaggccgct
      901 atggctcagg ccgaggttga acagcggcag cccggcgaag agcacggcgg ccagcagcag
      961 ttgttcgacc caggcctgcc tgtgcgtgcg cagcagcgga tgcagcaggc acaggagcca
     1021 ggccaggaag aagccgcgga tttcccagtc ggcacgctgc gccaggtcga cgggcaacag
     1081 gcggttggcc cagaagtagg ccgcgatcgc cagcggcagg ccggccaccg tgccgatgtt
     1141 gagcacctcc accaggcgat ggcccagcgg cgtgcggccg agcttctgcc gttcgggcag
     1201 gcgcttgacc acccacagca ccaggccggt ggcgatcatc gccgtgccca gcaggccgct
     1261 gaggaagaag aaccagcgca ggggcgggcc ggcgaagcga atcaggtgca ggccggtgaa
     1321 cacgttgtag gtggcgctgg ccgcgttgac ctccgccgcc ggcgggctgg acagcggcgc
     1381 gccggtcact ccgtcgaagc gcaggcgctc gccgttgcca cgctccagca ggctgtcgcc
     1441 gccgcgttcg cgcagttcga tcacggcctg gcgtgtgccc ggtgccacca cctgcacgct
     1501 cgccacgcct tgcggccact ggcg
//
LOCUS       DATIHC010000102         1686 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11917, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000102 DATIHC010000000
VERSION     DATIHC010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1686
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11917"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..134)
                     /locus_tag="VLF16_01695"
     CDS             complement(<1..134)
                     /locus_tag="VLF16_01695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016984490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69618.1"
                     /translation="MSVTTADTGHSPAGPMTREERKVIFASSLGTVFEWYDFYLYGSL
                     S"
     gene            440..>1686
                     /locus_tag="VLF16_01700"
     CDS             440..>1686
                     /locus_tag="VLF16_01700"
                     /inference="COORDINATES: protein motif:HMM:NF019315.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7TM-DISM domain-containing protein"
                     /protein_id="HSX69619.1"
                     /translation="MRRLWIATGLIVSLLLGLSVSAAPKQTPAESWSILLDKSAAMTF
                     AEVQAQTSRFQPLDRLSFTLPASPQAIWLKVDTRSFSAPHWLWLFAPRVQNLDFYLVR
                     DGQLEQQLRTGEALTLSSRPLPSRAYLFSLPNDDVPRTAYLRMTSNHALMMWFKVIDE
                     AELVAQEKPAYLFGALLGGLMLLALFNLMRMGYSPTASNLWLAGMHAALALCATANIG
                     LLAVLLPEQSYNQSLIADLSALAAALCILGYTRFFFSGCAAERSPLRHVLHLEFAVVA
                     LAAGMIAFTGLFWHSWLVYGLVVMVVLTVPVIAFVHWRAGYRPARLIVAALVIFGLGF
                     AVLGPVLFGFDQLNPGWLVLSLFSVAMVAGLILSIALSERQRQIQRENLFRRTSEAAT
                     SAELKAKAEFLAKISHEIRTPMNG"
BASE COUNT          266 a          600 c          505 g          315 t
ORIGIN      
        1 gagagcgacc cgtacaggta gaagtcatac cactcgaaaa cggtccccag agacgaggcg
       61 aaaatgacct ttcgctcctc cctggtcatc gggccggccg gggaatggcc ggtatctgcg
      121 gttgtcacgc tcataaggca gtctcccgac gccccgtcga aaagagcgga atcgccctcg
      181 tccggacgtc ttttattgtg gttgttctga cgccaaggct agacccgccc acccgaagcg
      241 ttattagact ttagtcgcag atgacttgaa aaaccgggca ctatctggat gagcgagcgg
      301 gcggcaggct ttgcccgaaa ttcgcgacgc agcgcagggt aaagatgcgg taaaactccc
      361 agtcgccaat cggcatggct gacttttgcc cattgcccgt agctataatc cgggaatcta
      421 ttaaagaagg gactccgccg tgcgccggct ctggatcgcc acaggactca tcgtcagcct
      481 gcttctgggc ctgtcggtct cggctgcgcc gaagcagaca cccgccgaga gctggtcgat
      541 cctgctcgac aagtcggccg ccatgacctt cgccgaggtg caggcgcaga cctcgcgctt
      601 ccagcccctc gaccgcctct ccttcactct ccccgcctcg ccccaggcca tctggctcaa
      661 ggtcgacacc cgctccttct ctgcaccgca ctggctgtgg ctgttcgccc cgcgtgtgca
      721 gaacctggat ttctatctgg tgcgcgacgg ccagctggag cagcagctgc gcaccggcga
      781 agcgctgacc ctgagctcgc gcccgctgcc gtcgcgggcc tacctattca gcctgcctaa
      841 cgacgacgtg ccgcgcaccg cctacctgcg catgacttcc aaccacgcgc tgatgatgtg
      901 gttcaaggtc atcgacgagg ccgagctggt ggcccaggag aagccggcct acctgttcgg
      961 tgcgctgctc ggcggcctga tgctgctggc cctgttcaac ctgatgcgca tgggctattc
     1021 gcccaccgcc agcaacctgt ggctggccgg catgcacgcc gcgctggccc tgtgcgccac
     1081 cgccaacatc ggcctgctcg ccgtgctgtt gccggagcag agctacaacc agtcgctgat
     1141 cgccgacctg tcggccctgg ccgccgccct gtgcatcctc ggctataccc gcttcttctt
     1201 cagcggctgc gccgccgagc gcagcccgct gcgccacgtg ctgcacctgg aattcgccgt
     1261 ggtcgccctg gcggcgggca tgatcgcctt caccgggctg ttctggcaca gctggctggt
     1321 ctacggcctc gtcgtgatgg tggtgctcac cgtgccggtc atcgccttcg tgcactggcg
     1381 cgccggctac cgcccggccc ggctgatcgt cgccgccctg gtgatcttcg gcctcggctt
     1441 cgccgtgctc ggcccggtgc tgttcggctt cgaccagctc aaccccggct ggctggtgct
     1501 cagcctgttc agcgtggcca tggtcgccgg cctgatcctc agcatcgcgc tgtccgagcg
     1561 gcagcggcag atccagcgcg agaacctgtt ccgccgcacc agcgaggccg ccaccagcgc
     1621 cgagctgaag gccaaggccg agttcctggc caagatcagc cacgagatcc gcacgcccat
     1681 gaacgg
//
LOCUS       DATIHC010000103         1812 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37521, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000103 DATIHC010000000
VERSION     DATIHC010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1812
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37521"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..464)
                     /locus_tag="VLF16_01705"
     CDS             complement(<1..464)
                     /locus_tag="VLF16_01705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020305969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HSX69620.1"
                     /translation="MASKPAAPRQQKHLAVLIDADNASAAIVEGLFEEIAKYGLASVK
                     RIYGDWTLPNLGGWKQVLLDYSIQPIQQFAYTKGKNATDSSLIIDAMDLLYTRRFDGF
                     CLVSSDSDFTRLAARLREEGLEVIGFGEQKTPKPFVSACDKFIYIELLRADA"
     gene            complement(607..960)
                     /locus_tag="VLF16_01710"
     CDS             complement(607..960)
                     /locus_tag="VLF16_01710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007927233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69621.1"
                     /translation="MLSRIPLITGLIASLAFAGGQQAHAADGGDVAAGVAVGAIIGGV
                     LASQRPVRVYEPAPVYHAPPPRVVYYEPRPVYYEPRPVYYRPGPVYYVPEPRHRHKHW
                     RKHHRRHHHHHGHRW"
     gene            1257..>1812
                     /locus_tag="VLF16_01715"
     CDS             1257..>1812
                     /locus_tag="VLF16_01715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69622.1"
                     /translation="MVLGLGGCSGRLAHESIVSKNSEPKAGEFLQSDVDRMATLAMRN
                     NLNSLYQLMSKLYQRNPQEWRKTGLPTRAAAEQAIHEAIEQNQPLPQLGGRRDVAALS
                     YALSPDFEGDRVGAFIYALGSMLVTAHGGRTEFYLTDSFDAQFIYNAARNIEKAAWML
                     SQRRDARGRPLLLSNEGGNLSYAVE"
BASE COUNT          326 a          565 c          616 g          305 t
ORIGIN      
        1 tcggcatccg ctcgcagcag ctctatatag atgaacttgt cgcacgccga cacgaacggc
       61 tttggcgtct tctgctcgcc aaacccgatc acctccagtc cttcctcccg caggcgggca
      121 gccaggcggg tgaagtcact gtcgctggag accaggcaga acccatcgaa acgccgcgta
      181 tagagcaggt ccatcgcatc gatgatcagc gagctatcgg tggcgttctt gcccttggtg
      241 taggcgaact gctggatggg ttgaatggag taatccagaa gcacctgctt ccagccaccc
      301 aggttgggca gggtccagtc accgtagatg cgtttgacgc tggccaatcc gtatttggcg
      361 atttcctcga acagcccttc gacgatggct gccgaggcgt tgtccgcatc gatcagtacg
      421 gcgaggtgct tctgctgacg gggtgccgca ggtttgctgg ccatgaatgc atccttgcag
      481 gtcgatggcc gacattactg cgaaatactg gcccagcgcc acagttgcga actgggtcac
      541 atcaccgcat gccttgatcc ctcggtccag aaagaagaaa gccccgcatc gagcggggct
      601 ttccggttac cagcgatgac cgtggtggtg atgatggcgg cggtggtgct tgcgccaatg
      661 cttgtggcga tgacgcggct ccggcacgta gtacaccggg cccggccggt agtagacggg
      721 gcgcggctcg taatagaccg ggcggggctc gtagtagacg acccgcggtg gcggggcatg
      781 gtagaccggc gccggttcgt agacccgcac cggccgctgg ctggccagca cgccgccgat
      841 gattgcaccg accgcgacgc ccgcggccac gtcgccgccg tccgccgcgt gcgcctgttg
      901 cccgccggcg aaggcgaggc tggcgatcag gcccgtgatg aggggaatac gcgaaagcat
      961 ggtcgagact cctctgaaac cggatcgtcc ggttacaggc ttcgactgcg cggcgtttcg
     1021 ctcatcgcgc gcggcagtgt aaatcctgtg taaaacagcg ccgctagcct cgaagcgcac
     1081 gcagatcgtt gccgtggaac cggggtcgaa cgggcggagg gccgggcgaa tggcctggct
     1141 cacggtgcag cggcggcgtt ttgcgcttta ctgcaagccg agggacgcgg gagagcgggg
     1201 gcaatccgat gaagtcagcc aatgccgcac ggggctgggc tgtggtgatc ttgggcatgg
     1261 tgttgggcct gggcggctgc tcggggcggc tggcgcacga gagcatcgtc agcaagaaca
     1321 gcgagcccaa ggccggcgag ttcctgcaga gcgacgtgga ccgcatggcg actctggcca
     1381 tgcgcaacaa cctcaacagc ctgtatcagc tgatgagcaa gctgtaccag cgcaaccccc
     1441 aggaatggcg caagaccggc ctgccgaccc gcgcggcggc tgagcaggcg atccacgagg
     1501 ccatcgaaca gaaccagccg ttgccgcagc tcggcggtcg ccgcgacgtg gcggcgctga
     1561 gctacgcgct gagtcccgac ttcgagggcg accgggtcgg cgcgttcatc tatgccctgg
     1621 gcagcatgct ggtgaccgcc cacggcgggc gcaccgagtt ctacctcacc gactccttcg
     1681 acgcgcagtt catctacaac gccgcgcgca atatcgagaa ggccgcctgg atgctgagcc
     1741 agcgccgcga cgccaggggc cggccgctgc tgctgtccaa cgagggcggc aacctcagct
     1801 acgcggtgga gt
//
LOCUS       DATIHC010000104         1666 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42256, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000104 DATIHC010000000
VERSION     DATIHC010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1666
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42256"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1139)
                     /locus_tag="VLF16_01720"
     CDS             complement(<1..1139)
                     /locus_tag="VLF16_01720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014716714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HSX69623.1"
                     /translation="MSKPSFYNLAWRWHFYAGLFVIPFLILLSLTGIVYLFKPQLDAL
                     MYPELLNVQPAGTPLSADQQLARLQQALPQAQVSQYLPPVDGERSAQFVAQLDGRKTN
                     LFLDPYSGALLGQQDAANNLQAIARALHGELMIGPLGDRLIELAAGWGIVLVVSGLYL
                     WWPRGQGGAGVLWPRLSARGRLLWRDLHAVTGFWGSAVLLFMLLTGMTWTGFWGAQFA
                     GAWNHFPAAMWDAVPQSDQQARSLNTASGQTVAWAVENTPLPQSDPHAAHKGHGAAPA
                     PASAERIGLQQVVDTASRLAVHPGYSITFPADEKGVFTIAIFADDPRDDATLHLDQYS
                     GKVLADIRWDDYGVVARAVESGVMLHEGKMFGLANQLLMLAVCLL"
     gene            complement(1192..1563)
                     /locus_tag="VLF16_01725"
     CDS             complement(1192..1563)
                     /locus_tag="VLF16_01725"
                     /inference="COORDINATES: protein motif:HMM:NF022610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2946 domain-containing protein"
                     /protein_id="HSX69624.1"
                     /translation="MPSTRHLQRTARLALLAMWLLLAAPLFSQALASMAPTPAWLSEM
                     TCGEGEQHGAAAQDHAPWAQCGYCTLLLSSPALAGAPPGLAGTASFVDLAPITQIPVA
                     LGESIVRHDAPPRAPPLTPAV"
BASE COUNT          262 a          569 c          611 g          224 t
ORIGIN      
        1 atcagcagac acaccgccag catcagcaac tggttggcca ggccgaacat cttgccctcg
       61 tgcagcatca ccccgctctc caccgcccgc gccaccacgc cgtaatcgtc ccagcggatg
      121 tccgccagca ccttgccgct gtactggtcg aggtgcaggg tggcgtcgtc gcgcggatcg
      181 tcggcgaaga tggcgatggt gaacacgccc ttctcgtccg ccgggaaggt gatgctgtag
      241 cccggatgca cggcgagccg gctggccgtg tcgaccacct gctgcaggcc gatgcgctcg
      301 gccgacgccg gtgccggcgc ggcgccgtgg cccttgtgcg cggcgtgcgg atcggactgc
      361 ggcagcggcg tgttctccac cgcccaggcc acggtctggc ccgaggcggt gttgaggctg
      421 cgcgcctgct ggtcggactg cggcacggcg tcccacatgg ccgccgggaa gtggttccag
      481 gcgccggcga actgggcacc ccagaagccg gtccaggtca tgccggtgag cagcatgaac
      541 agcagcaccg cgctgcccca gaagccggtg accgcgtgca ggtcgcgcca cagcaggcgc
      601 ccgcgcgccg acagccgcgg ccacagcacg ccggcgccgc cctggccacg cggccaccag
      661 aggtacaggc cggacaccac caggacgatg ccccagccgg ccgccagttc gatcaggcga
      721 tcgccgagcg gaccgatcat cagctcgccg tgcagggcgc gggcgatggc ctgcaggttg
      781 ttcgccgcat cctgctggcc gagcagcgcg ccgctgtagg ggtcgaggaa caggttggtc
      841 ttgcgcccgt cgagctgggc gacgaactgc gcgctgcgct cgccgtcgac cggcggcagg
      901 tactggctga cctgggcctg cggcaacgcc tgctgcagac gtgccagctg ctggtccgcg
      961 gacagcggcg tgccggccgg ctgcacgttg agcagctccg ggtacatcag cgcgtcgagc
     1021 tgcggcttga acaggtagac gatgccggtc agcgacaaca ggatcaggaa gggaatgacg
     1081 aacagcccgg catagaaatg ccagcgccag gccaggttgt agaaggatgg cttgctcacg
     1141 tggaggctcc gcaacggtcg gatcggcggg ctctgcggcc ctgtggagag atcagacagc
     1201 aggcgtcagc ggcggtgcgc gcggcggcgc gtcgtggcgg acgatggatt cgccgagggc
     1261 gacgggtatc tgcgtgatcg gcgccaggtc gacgaagctc gccgtgccgg caaggcccgg
     1321 cggcgcgccg gccagcgccg ggctggacag cagcagggtg cagtagccgc actgcgccca
     1381 cggcgcgtga tcctgcgccg ccgctccatg ctgctcgccc tcgccgcagg tcatctcgct
     1441 cagccaggcc ggcgtcggcg ccatgctggc cagcgcctgg gaaaacagcg gcgcggccag
     1501 cagcagccac atggccagca gggccaggcg cgcggtgcgc tgtagatggc gggtcgaagg
     1561 caaggatggc gatccggttg gggacaaagg gacactggcg cgtccgggtg caagcatagc
     1621 cgctattgca cggctggcgg tcgctccaga catttccgga cctgcc
//
LOCUS       DATIHC010000105         2180 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42266, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000105 DATIHC010000000
VERSION     DATIHC010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2180
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42266"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2180)
                     /locus_tag="VLF16_01730"
     CDS             complement(<1..>2180)
                     /locus_tag="VLF16_01730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003450737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HSX69625.1"
                     /translation="QHTASSVSAVANADGQQVEAQGEQPVLVTESGGRALRSRSADYS
                     HLDWVPREQLTAAQLAEVGPYCAGAYVEPLRPGMSDDTPMDESPMFVSAKASRYEQEK
                     QTATLAGDVVLRQSSMQVEADEASLQQTENRGELKGNVRIRDNGMLVVGDRAEIQLDN
                     GEAKVENAEYVIHKGHVRGSALYAKRDESAIVRLKDGTYTRCEPGSNAWHLKGNNIKL
                     NPATGFGTATNVTLRVKDIPVFYTPYIYFPIDDRRQSGFLAPSISTSSDSGFSLSTPY
                     YFNLAPNYDATLYPTYMAKRGLLMEGELRYLAQSSEGQVGGAYLDDKEDERELQSEYE
                     DQRWMYNWQHKQGLDERLLAEVDYTDISDPYYFQDLNSDLENLETPDFLNQRGTLTWR
                     GDSFTARLNAHAYEATSVIDVTPYERLPQLTLDGKLPFQPGGLELFYGTEYVRFDRDL
                     RSGNFIDEDGNPERWYDNNVRGLARANGERIHIEPGISLPMEATWGFIKPSLKYAYTQ
                     YDLSLDSIGKDYLTSQGEDFKDNPDRNVPIFSLDSGLYFDRSTQWLGNNYRQTLEPRA
                     FYLYVPEEDQDEIPVFDTGEYSFNYASLWRDNRFSGRDRIGDENKLSLGVPNRWIEDN
                     GFERQRFSIGQAFYFEDRKVTMPDRTGTLSQRDDYTSSSSPYALEYLYRFNRDWRVSS
                     DFNWDGNTHRTRSGSLMFHYQPEANPNKVINAGYRYRNDTMRYD"
BASE COUNT          345 a          644 c          717 g          474 t
ORIGIN      
        1 gtcgtagcgc atggtgtcgt tgcgatagcg gtagccggcg ttgatcacct tgttcgggtt
       61 ggcctccggc tggtagtgga acatcaggct gccggaccgg gtgcggtgag tgttgccgtc
      121 ccagttgaag tccgaactca cgcgccagtc acgattgaag cggtacaggt actccagcgc
      181 gtagggggag gagctggagg tatagtcatc gcgctgactc agcgtccccg tcctgtcagg
      241 catcgtgacc tttctatcct cgaaatagaa agcctggccg atgctgaaac gctggcgctc
      301 gaagccgttg tcctcgatcc agcggttggg cacgcccagc gacagcttgt tctcgtcgcc
      361 gatacggtca cggccgctga agcggttgtc acgccacaac gaggcgtaat tgaagctgta
      421 ctcgccagta tcgaataccg gaatctcgtc ctgatcttct tccggtacgt acaggtagaa
      481 ggctcgcggt tccaaggtct gtcggtagtt attgccaagc cactgcgtac tgcggtcgaa
      541 gtacaggccg ctatccaggc tgaagatcgg cacgttgcga tcaggattgt ccttgaaatc
      601 ctcgccttga ctggtgaggt agtccttgcc tatggaatcc agagacaggt catactgcgt
      661 gtaggcgtac ttcaggctcg gcttgataaa gccccaggtc gcctccatcg gcaggctgat
      721 gcccggttcg atatggatgc gttcgccatt ggcgcgtgct aggccgcgca cgttgttgtc
      781 gtaccagcgc tcgggattgc catcctcatc gatgaagttg ccgctgcgca ggtcgcggtc
      841 aaagcgcacg tactcggtgc catagaaaag ctccaggcca cctggctgga acggcagctt
      901 gccgtccaga gtcagctgcg gcaggcgctc gtacggcgtc acgtcgataa cgctggtggc
      961 ctcgtaagca tgggcgttca ggcgagcggt gaagctgtcg ccgcgccagg tcagcgtgcc
     1021 gcgctgatta aggaagtccg gagtttccag gttttccaga tcgctgttca ggtcctggaa
     1081 atagtagggg tcgctgatgt cggtgtagtc gacttcagcc agcaggcgct cgtccagacc
     1141 ctgtttgtgc tgccagttgt acatccagcg ctggtcttcg tattcggact gcagctcgcg
     1201 ctcgtcttcc ttgtcgtcca gatatgcgcc gccgacctgg ccttcgctgc tctgcgccag
     1261 gtagcggagc tcgccttcca tcagcaggcc gcgcttggcc atgtaggtcg gatagagcgt
     1321 ggcgtcgtaa ttgggcgcca ggttgaaata gtagggcgtc gacagcgaga agccgctgtc
     1381 gctggaagtg ctgatgctcg gcgcgaggaa gccggactgg cggcgatcgt cgatcgggaa
     1441 atagatgtac ggggtgtaga acaccggaat gtccttcacc cgcagcgtca cgttggtcgc
     1501 ggtgccgaag ccggtggccg ggttcagctt gatgttgttg cccttcaggt gccaggcgtt
     1561 gctgcccggt tcgcagcggg tataggtgcc gtccttgagg cggacgatgg cgctttcatc
     1621 gcgcttggcg tagagcgcgc tgccgcgcac atggcccttg tggatcacgt actcggcgtt
     1681 ctcgaccttg gcttcgccgt tgtccagctg gatctcggca cggtcgccaa ccaccagcat
     1741 gccgttgtcg cggatgcgta cgttgccttt cagttcgccg cggttctcgg tctgctgcag
     1801 gctggcttcg tcggcctcga cctgcatgct cgactggcgc agcaccacgt cgccggccag
     1861 ggtagcggtc tgcttctcct gctcgtagcg cgaggccttg gcagagacga acatcggcga
     1921 ctcgtccatc ggcgtgtcgt cgctcatgcc cgggcgcagc ggttccacgt aggcgccggc
     1981 gcagtacggt ccgacctcag ccagttgggc ggcggtcagt tgctcgcgag gcacccagtc
     2041 caggtggctg tagtcggcgc tgcggctgcg cagagcgcgg cctccgctct cggtgaccag
     2101 caccggctgc tcgccttggg cctcaacctg ctggccgtcg gcattggcca cggcgctgac
     2161 gctcgaggcg gtgtgctgcg
//
LOCUS       DATIHC010000106         5107 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5040, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000106 DATIHC010000000
VERSION     DATIHC010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5107
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5040"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            57..176
                     /locus_tag="VLF16_01735"
     CDS             57..176
                     /locus_tag="VLF16_01735"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69626.1"
                     /translation="MQRKPERRTEELLGVLQDNLQRIDQMVASTSSGLIGWVR"
     gene            complement(191..487)
                     /locus_tag="VLF16_01740"
                     /pseudo
     CDS             complement(191..487)
                     /locus_tag="VLF16_01740"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
     gene            complement(477..2240)
                     /locus_tag="VLF16_01745"
     CDS             complement(477..2240)
                     /locus_tag="VLF16_01745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017519179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSX69627.1"
                     /translation="MHKTRRIVSIEIREEVDVVSCRQSAKRIAAWLDLSQLEQIRFAT
                     SVSELARNIYQYAGSGFFHFDLAQNAVEQLCALTFTAEDHGPGIAHIEQILDGSYVSP
                     TGMGVGLRGAQRLMDDFDIKTSAAGTHIRGRKAIHPPRPFPSPASLKAIREQLQSDGV
                     ADPYVELQVRGKELLLTTAELQSKQLELEATNVELENTNKGVVALYSELEKATEELRE
                     AGESKSRFFANMTHEIRTPINIVENISKLLLKGMDGPLNPEQYKQVAFISDAAAELSE
                     LVNELLDLSEAESGRIEITPVKFELSDFVEQLRQFAGALGLRHPSVEWEIVGASQEVV
                     LETDRHRLFQIMRNLIGNAFKYTPAGKVVVRTYLPDEHSAEFMVEDTGVGIAPENHAR
                     VFEEFLRVRGPGMSQVQGTGLGLPLARRLAGLLRGEISLDSELGRGSRFLLRFARRYD
                     ENGAEPAPLDLSGINVLLIDDNEADRYLLSRLLQPYHPVIIEAVSATSSIDKLHAIRP
                     DIIFLDLDLPDISGEDLLESMDWSMHARVLINTAKPLEGPLLERLQRQSRAILHKSHP
                     DYAEQVLNQVRRLTEEQRDAH"
     gene            complement(2233..3207)
                     /locus_tag="VLF16_01750"
     CDS             complement(2233..3207)
                     /locus_tag="VLF16_01750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017519180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIIE family protein phosphatase"
                     /protein_id="HSX69628.1"
                     /translation="MTEVIKQFSYAVSHTAHADAARRVVIREASRLTTDETLLGRVSV
                     VVQEMARNLVLHAGGGELLFYQDDERLDLLAVDKGPGMDDVARCLADSYSSKGTMGAG
                     LGAISRLSDHFDIYSQPGQGTVVFAQFRLNPATSPLISAGVSTPYPGEEVCGDAWAIR
                     DNRIMVCDGLGHGHAAHEASRRARDLFLDHDDTLPLETLLERMHRALMPTRGGAVALA
                     EIQPEQAQVRFCGMGNIAGVLHDGRSRSMVSGNGTVGYRIGRIQSFSYPWSPTTLLMM
                     SSDGISTRHDLGSYPRLAGRHPAVIAAVLHRDFRRHNDDATLVVVRHA"
     gene            complement(3204..3602)
                     /locus_tag="VLF16_01755"
     CDS             complement(3204..3602)
                     /locus_tag="VLF16_01755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019473915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSX69629.1"
                     /translation="MTKTQTLPLKQETDIVIIRQRVRKAAEEARLGLVSQTKIVTAAS
                     EIARNALIYGGGGECLIELANRDGRAAVRLVIADQGPGIADIERALVDGYTSGSGLGR
                     GLSGSRRLVDEFDLKSQPGAGTTVELWKWK"
     gene            complement(3562..3987)
                     /locus_tag="VLF16_01760"
     CDS             complement(3562..3987)
                     /locus_tag="VLF16_01760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007912539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HSX69630.1"
                     /translation="MVDRIPILKMGKYLLLSIQVDMHDQLALDLQEDLTEQIVRHRAK
                     GVLIDISSLEIVDSFIGRMLSHIANVSRILDAKVIVVGMQPAVAITLVELGLSLEGIA
                     TALNIEKGMRWLENSVNEDEIAGEPESDEDTDAPSETGN"
     gene            complement(3998..4834)
                     /locus_tag="VLF16_01765"
     CDS             complement(3998..4834)
                     /locus_tag="VLF16_01765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019366609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HSX69631.1"
                     /translation="MSVSQLAELLKQNEEQLLDKWLAAQRTAGIRLDLIDDRTVQDNS
                     RDLLKSVTMALAQGSDDIESAAWKPLKSQLERLSMTQARQGFSPSETATFVFSLKEPL
                     FELVQNQDAGGIELVWQINKLVDKLGLFSVEYYMTGREAVIREQQESLLELSTPVVQL
                     WDGVLAVPLIGALDSNRTQIVMESLLQKIVETESDIAIIDITGVPTVDTMVAQHLLKT
                     ITAAKLMGARCIISGIRPQIAATIVHLGVELGDVVTKSSLADAFKLSLKELNVRLVGN
                     AR"
BASE COUNT          815 a         1583 c         1743 g          966 t
ORIGIN      
        1 cgttcagcca cgacctgcgc tcgccgctgt cggcgtcggt gatggctacc gggctgatgc
       61 agcgcaagcc cgagcgtcgt accgaggaac tgctcggcgt gctgcaggac aacctgcagc
      121 gcatcgacca gatggtcgcc agtacctcgt ccgggttgat cgggtgggtg aggtaggcgc
      181 gggcgccggt attcaggccg gtggccttgt ccttgccgct gacgaaggtg gccgagatgt
      241 tgatgatcgc cggcagtcgc gcggggccga gggtctgctc ggccttctgg atcagctcga
      301 agccggtcat atccggcagg ttgatgtcga ggatcaccaa atccacgccg tcgatcatca
      361 gcgccagtcc ctcggcgccg gtgcccgctt caagaacctg gaagttcgac tcgctggaca
      421 gaatcctgcg caggacatag cggttggctt ccatgtcgtc gacgatcagg atccgtctag
      481 tgcgcatcgc gttgctcctc ggtcagacgc ctcacctggt tcaggacctg ttcagcgtag
      541 tcgggatggg acttgtgcaa tatcgcccgg ctctgccgtt gcaggcgttc gagcagcggg
      601 ccttcgagcg gtttggcggt gttgatcagc acccgcgcgt gcatgctcca gtccatgctt
      661 tcgagcaggt cctcgccgga aatatccggc aggtccaggt cgaggaagat gatgtccggc
      721 cggatggcat gcagcttgtc gatgctggac gtggcgctga ccgcctcgat gatcaccggg
      781 tggtagggct gcagcaggcg cgacagcaga tagcggtcgg cctcattgtc gtcgatcagc
      841 agcacgttga tgccgctcag gtccagcggc gccggctccg ctccgttctc gtcgtagcgg
      901 cgggcgaatc gcagcaggaa acggctgccg cgtcccagct cgctgtccag gctgatctcg
      961 ccgcgcagca gcccggccag gcgccgcgcc agcggcaggc ccagcccggt gccctgtact
     1021 tgggacatgc cggggccgcg cacccgcagg aactcctcga acactcgcgc atggttctcc
     1081 ggcgcaatgc cgacgccggt gtcctcgacc atgaattcgg cgctgtgctc gtccggcagg
     1141 taggtacgca cgaccacctt gccggccggg gtgtacttga aggcgttgcc gatcaggttg
     1201 cgcatgatct ggaacaggcg gtggcggtcg gtctccagca ccacttcttg ggaggcgccg
     1261 acgatttccc actccacgct cggatggcgc agacccagcg cgccggcgaa ctggcgcagc
     1321 tgctcgacga aatcggagag ttcgaacttc accggggtga tctcgatccg gccggattcg
     1381 gcctcggaga ggtcgagcag ttcgttgacc agttcggaca gctcggcggc agcatcgctg
     1441 atgaaggcca cctgcttgta ctgctcggga ttgagcggtc cgtccatgcc cttgagcagc
     1501 agcttgctga tgttctcgac gatgttgatc ggcgtgcgga tctcgtgggt catgttggcg
     1561 aagaagcggc tcttcgattc gccggcctcg cgcagttcct cggtggcctt ctccagctcc
     1621 gagtagagcg cgaccacgcc cttgttggtg ttctccagct cgacgttggt ggcctccagc
     1681 tccagctgct tgctctgcag ctcggcggtg gtcagcagca gctccttgcc gcgcacctgt
     1741 agctcgacgt agggatcggc cacgccgtcg ctctgcagct gctcgcgaat ggccttgagc
     1801 gaggcgggag aggggaaggg gcgcggcggg tggatcgcct tgcggccgcg tatgtgggtg
     1861 ccggcggcgg aggtcttgat gtcgaagtca tccatcagcc gctgcgcgcc gcgcaggccg
     1921 acgcccatgc cagtcggcga gacgtagctg ccgtcgagga tctgctcgat gtgggcgatg
     1981 cccgggccat ggtcttcggc ggtgaaggtc agcgcgcaga gctgttcgac ggcgttctgc
     2041 gccaggtcga aatggaagaa gccgctgccg gcgtactggt agatgttgcg cgccagctcg
     2101 gaaaccgagg tagcgaagcg gatctgctcc agctgcgaca ggtcgagcca ggcggcaatg
     2161 cgcttggcgc tctgccggca gctgaccacg tcgacttctt cacggatctc gatcgagact
     2221 attcgcctcg ttttatgcat gtctcaccac caccagggtt gcgtcgtcgt tgtgccgacg
     2281 gaagtcgcgg tgcagcaccg ccgcgatgac cgccggatgg cgcccggcga ggcgcggata
     2341 actgcccaga tcgtgacgcg tgctgatgcc gtccgacgac atcatcagca gcgtcgtcgg
     2401 cgaccagggg tagctgaagc tctggatgcg accgatgcga tagcctaccg tgccgttgcc
     2461 ggacaccatg ctgcggctgc gaccgtcgtg cagcaccccg gcgatattgc ccatgccgca
     2521 gaaacgcacc tgggcctgct cgggctggat ttccgccagc gccacggcgc cgccgcgggt
     2581 cggcatcagc gcacggtgca tgcgctcgag cagggtttcc agcggcagcg tgtcgtcgtg
     2641 gtcgaggaac aggtcgcggg cgcggcggct ggcctcatgg gcggcatggc catggccgag
     2701 gccgtcgcag accatgatgc ggttgtcgcg gatcgcccag gcgtcgccgc agacctcctc
     2761 gccggggtag ggcgtgctca ccccggccga gatcagcggg ctggtggccg ggttcaggcg
     2821 gaactgggcg aacaccacgg tgccctggcc tggctgggag tagatgtcga agtggtcgga
     2881 cagccggctt atggcgccca ggccggcgcc catggtgccc ttggaggaat agctgtcggc
     2941 caggcagcgg gccacgtcgt ccatgccggg gcccttgtcg acggcgagca ggtccagccg
     3001 ctcgtcgtcc tgatagaaga gcagctcgcc gccaccggca tgcagcacca ggttgcgcgc
     3061 catctcctgc accacgacgc tcacgcgccc cagcagggtc tcgtcggtcg tgagccggct
     3121 ggcctcgcgg atgacgaccc ggcgcgcggc gtcggcatgg gcggtgtggc tgaccgcata
     3181 ggaaaactgc ttgataacct cggtcatttc cacttccaca gttccaccgt cgtgccggcg
     3241 ccaggctggc ttttcaaatc gaattcgtcg accaggcggc gcgagccgct caggccccgg
     3301 cccaggccgc tgcccgaggt gtagccgtcg accagggcgc gctcgatatc ggcgatgccc
     3361 gggccctggt cggcaatgac caggcgcacg gccgcgcgac cgtcgcggtt ggcgagctcg
     3421 atcaggcatt cgccgccacc gccgtagatc agcgcgttac gcgcgatctc gctggccgcg
     3481 gtgacgatct tggtctgcga gaccaggccc agacgggctt cttcggccgc cttgcgcacc
     3541 cgctggcgga tgatgacgat gtcagtttcc tgtttcagag ggagcgtctg tgtcttcgtc
     3601 actctcgggc tccccggcga tttcatcctc gttcacgctg ttttccagcc agcgcatgcc
     3661 tttctcgata ttcagcgcgg tggcgatgcc ctccagggac aggcccagtt cgaccagggt
     3721 gatggccacg gccggttgca tgccgaccac gatcaccttg gcgtcgagga tgcgtgacac
     3781 gttggcgata tgggacagca tgcggccgat gaaggagtcg acgatctcca gcgaagagat
     3841 gtcgatcagc acgcccttgg ccctgtggcg cacgatctgc tcggtgaggt cttcctgcag
     3901 gtccagcgcc agttggtcgt gcatgtcgac ctgaatgctg agcagcaggt atttgcccat
     3961 cttgaggatt ggaatgcggt ctaccatggc cgggtcctca gcgcgcgttg ccgaccagac
     4021 ggacgttcag ctccttgagc gacagcttga aggcgtcggc cagggaggac ttggtcacca
     4081 cgtcgcccag ttccacgccc aggtggacga tggtcgcggc gatctgtggg cggatgccgc
     4141 tgatgatgca gcgggcgccc atcagcttgg cggcggtgat ggtcttgagc aggtgctggg
     4201 cgaccatggt gtccacggtc ggcacaccgg tgatgtcgat gatggcgatg tcggactcgg
     4261 tctcgacgat cttctgcagc agcgactcca tgacgatctg ggtgcggttg ctgtccagcg
     4321 cgccgatcag cggcacggcc agcacgccgt cccacagctg caccaccggg gtggagagtt
     4381 ccagcaggct ttcctgctgc tcgcggatca ccgcctcgcg cccggtcatg tagtactcga
     4441 cgctgaacag gccgagcttg tcgaccagct tgttgatttg ccagaccagc tcgatgccgc
     4501 cggcatcctg gttctgcacc agttcgaaca gcggctcctt cagggaaaac acgaaggtgg
     4561 cggtttccga ggggctgaag ccttgacggg cctgggtcat ggaaaggcgt tcgagctggg
     4621 atttgagcgg cttccaggcg gcactttcaa tatcgtcgga gccctgggcc agggccatgg
     4681 tcaccgactt gagcaggtct cgggagttgt cctgcacggt gcggtcgtcg atcaggtcga
     4741 ggcggatacc cgcggtgcgc tgggcggcca gccacttgtc caggagttgt tcttcgttct
     4801 gtttgagaag ctcggcaagc tgagagacgg acatcgctga tttccttatg cggaagtaga
     4861 ttgaaacgct agtcaggcca gggcccctta taaccgcatc aggggaaatg atctatccaa
     4921 cggcaatatg agatggctca gggaccggct gccagggaag ggagttcaac cttttcagcg
     4981 aagcggcgca atgatcgagg gcagccgttc ggaggctgca cctctattca gatgaatccg
     5041 ggctggtgcc gttcggccac atagtccagc ggcagggcgg cggccttgat gaagaaggcg
     5101 gccagtt
//
LOCUS       DATIHC010000107         3600 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11927, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000107 DATIHC010000000
VERSION     DATIHC010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3600)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3600
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11927"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..795
                     /locus_tag="VLF16_01770"
     CDS             <1..795
                     /locus_tag="VLF16_01770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSX69632.1"
                     /translation="NYKNPYIRELIAEKDGWMLWPPIPFDYSSINYELQVPAPAPPSA
                     QNWLGTDDQGRDVLARVIYGFRVSVLFALALTIFSSLIGVLAGALQGYYGGWVDLAGQ
                     RFLEVWSGLPVLYLLIILASFVQPNFWWLLGIMLLFSWMSLVDVVRAEFLRGRNLEYV
                     RAARALGMGNGGIMFHHILPNAMVSTMTFMPFILTGAIGTLTSLDFLGFGLPAGEPSL
                     GELVAQGKANLQAPWLGITAFAVLALMLSLLVFIGEAARDAFDPRK"
     gene            797..2425
                     /locus_tag="VLF16_01775"
     CDS             797..2425
                     /locus_tag="VLF16_01775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010483424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSX69633.1"
                     /translation="MTDSNNLIEVRDLAVEFVSGNQAQRVVEGISFDIRKGETLALVG
                     ESGSGKSVTAHSILRLLPYPLARHPAGSIRYGSQDLLKLAPDKLRSIRGNRIAMVFQE
                     PMTSLNPLHSIGKQIGEVLAWHKGLSGEPARARIIELLELVGIAEPEKRLKAYPHELS
                     GGQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILDLLKDLQARLGMAMLLITHD
                     LNLVRRIAHRVCVMQRGCIVEQASCDELFRAPQHPYTRELLGAEPSGEPAANPAGAPL
                     LEVDDLRVWFPIKKGVLRRTVDHVKAVDGIDFSLPQGQTLGIVGESGSGKSTLGMAIL
                     RLLGSQGAIRFQGEALDGLSQQAVRPLRRQMQVVFQDPFGSLSPRMCVSQIVGEGLRI
                     HGIGSEKEQEQAVIDALKEVGLDPETRFRYPHEFSGGQRQRIAIARALVLKPALILLD
                     EPTSALDRTVQRQVVELLRSLQAKYNLTYLFISHDLAVVRALSHQLMVVKQGKVVEQG
                     PAEQVFAAPQHPYTRQLLEAAFMAPATADSLKEE"
     gene            2431..3225
                     /gene="fabI"
                     /locus_tag="VLF16_01780"
     CDS             2431..3225
                     /gene="fabI"
                     /locus_tag="VLF16_01780"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003202751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HSX69634.1"
                     /translation="MGFLAGKRVLIVGVASKLSIASGIAAAMHREGAELAFTYQNDKL
                     KGRVEEFAAGWGSSPELCFPCDVADDEEIAKVFEALGKKWDGLDCIVHSVGFAPGDQL
                     DGDFTEVTTRDGFKIAHDISAYSLVALAKAGRPLMQGRNGSILTLSYLGAERTMPNYN
                     VMGMAKASLEAGVRYLAGSLGPEGTRVNAISAGPIRTLAASGIKSFRKMLAANEKQTP
                     LRRNVTIEEVGNAGAFLCSDLASGISGEILYVDGGFNTTAMGAIED"
     gene            complement(3293..>3600)
                     /locus_tag="VLF16_01785"
     CDS             complement(3293..>3600)
                     /locus_tag="VLF16_01785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003282503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HSX69635.1"
                     /translation="GEGWKVIQAAGRSQDGVAPEILQKLFRMAKPGEDGKPTYAGVSL
                     NNGDYVVLRLDGVSLAKAELSDEEKISYRRFLASRAGQQDFAAYRQQLKEQAEVERF"
BASE COUNT          621 a         1239 c         1138 g          602 t
ORIGIN      
        1 aactacaaga acccgtacat ccgcgagctg atcgcggaaa aggacggctg gatgctctgg
       61 ccgccgatcc ccttcgacta ctcgagcatc aactacgagc tgcaggtgcc ggcccccgcg
      121 ccgccctcgg cgcagaactg gctgggcacc gacgaccagg gccgtgacgt gctggcgcgg
      181 gtgatctacg gcttccgcgt gtcggtactg ttcgccctgg cgctgaccat cttcagctcg
      241 ctgatcggcg tgctggccgg cgccctgcag ggctattacg gcggctgggt cgacctggcc
      301 gggcagcgct tcctcgaagt ctggtcaggg ctgccggtgc tctacctact gatcatcctg
      361 gccagcttcg tgcagcccaa cttctggtgg ctgctgggca tcatgctgct gttctcctgg
      421 atgagcctgg tcgacgtggt gcgcgccgaa ttcctccgcg gccgcaatct cgaatacgtg
      481 cgcgcggcgc gggcgctggg catgggcaac ggcggcatca tgttccacca catcctgccc
      541 aacgccatgg tttcgaccat gaccttcatg cccttcatcc ttaccggcgc catcggcacc
      601 ctgacctcgc tggacttcct cggcttcggc ctgccggccg gcgagccctc gctgggcgag
      661 ctggtggccc agggcaaggc caacctgcag gcgccctggc tcggcatcac cgccttcgcc
      721 gtgctggcgc tgatgctcag cctgctggtg ttcatcggcg aagccgcccg cgatgccttc
      781 gacccgagga aatgagatga ccgattcgaa caacctcatc gaagtgcgcg acctggccgt
      841 cgaattcgtc agcggcaacc aggcccagcg ggtggtcgaa ggcatcagct tcgacatccg
      901 caagggcgag accctggccc tggtcggcga gagcggttcg ggcaagtcgg tcaccgccca
      961 ctccatcctg cgcctgctgc cctacccgct cgcccgccac ccggccggca gcatccgcta
     1021 cggcagtcag gacctgctca agctggcgcc ggacaagctg cgcagcatcc gcggcaaccg
     1081 catcgccatg gtgttccagg agccgatgac ctcgctcaac ccgctgcaca gcatcggcaa
     1141 gcagatcggt gaggtactgg cctggcacaa gggccttagc ggcgagccgg cgcgcgcgcg
     1201 gatcatcgag ctgctggagc tggtcggcat cgccgagccg gagaagcgcc tcaaggccta
     1261 cccgcatgaa ctgtccggtg gccagcgtca gcgggtgatg atcgccatgg ccctggccaa
     1321 cgagccggag ctactgatcg ccgacgagcc gaccaccgcg ctggacgtca ccgtgcagct
     1381 gaagatcctc gatctgctca aggatctgca ggcgcgcctg ggcatggcca tgctgctgat
     1441 cacccacgac ctcaacctgg ttcgacgaat cgcccaccgc gtatgtgtca tgcagcgcgg
     1501 ttgcatcgtc gaacaggcgt cgtgtgacga attgttccgc gctccgcagc atccctatac
     1561 ccgggaactg ctcggcgccg agcccagcgg cgaaccggcg gccaaccccg caggcgcgcc
     1621 gctgctggaa gtggacgacc tgcgtgtgtg gttcccgatc aagaagggag tgctgcgacg
     1681 cacggtcgac catgtgaagg cggtggacgg aatcgacttc agcctgcccc agggccagac
     1741 cctgggcatc gttggcgaga gcggttccgg caagtccacc ctcggcatgg cgatcctgcg
     1801 gctgctcggc agccagggcg ccatccgctt ccagggcgag gcgctggacg ggctatcgca
     1861 acaggccgta aggccgttgc ggcggcagat gcaggtggtc ttccaggacc ccttcggcag
     1921 tctcagccca cgcatgtgcg tgagccagat cgtcggcgag ggcctgcgca tccatggcat
     1981 cggcagcgag aaggagcagg aacaggcggt cattgacgcg ctcaaggagg taggactgga
     2041 cccggagacc cggttccgct atccccacga gttttcaggc gggcaacggc agcggatcgc
     2101 cattgcccgg gcactggtgc tgaaaccggc gctgattctg ctggacgagc ccacttcggc
     2161 gctcgaccgc acggtacagc gccaggtggt ggagctcctg cgttcgttgc aggccaagta
     2221 caacctgacg tacctgttca tcagccacga tctggcggtg gtcagggccc tgagccatca
     2281 gttgatggtg gtcaaacagg gcaaggtggt tgaacagggg ccggccgagc aggtattcgc
     2341 cgcgcctcag cacccctata cccggcagtt gctggaagcc gcattcatgg ctccggcgac
     2401 cgccgactca ctgaaagagg aatgacgcac atgggttttc tcgccggtaa gcgcgtactg
     2461 atcgttggcg tggccagcaa actgtccatc gcctcgggca tcgcggccgc catgcaccgc
     2521 gagggcgccg agctcgcctt cacctaccag aacgacaagc tcaagggccg cgtcgaagag
     2581 ttcgccgccg gctggggctc cagccccgag ctgtgcttcc cctgcgacgt ggccgatgac
     2641 gaggagatcg ccaaggtctt cgaggcactg ggcaagaaat gggatggcct ggactgcatc
     2701 gtccactccg tcggcttcgc cccgggcgac cagctggatg gcgacttcac cgaagtcacc
     2761 acccgcgacg gcttcaagat cgcccacgac atcagcgcct acagcctggt ggccctggcc
     2821 aaggccggtc gcccgctgat gcagggccgc aatggcagca tcctcaccct ctcctacctc
     2881 ggcgccgagc gcaccatgcc caactacaac gtgatgggca tggccaaggc cagcctggag
     2941 gccggcgtgc gctacctcgc tggcagcctc ggcccggagg gcacccgcgt caacgccatc
     3001 tccgccggtc cgatccgcac cctggccgct tccggcatca agagcttccg caagatgctc
     3061 gccgccaacg agaagcagac cccgctgcgc cgcaacgtga ccatcgagga agtcggcaat
     3121 gccggagcct tcctctgctc cgacctggcc tcgggcatca gcggcgagat cctctacgtc
     3181 gacggtggct tcaacaccac cgcgatgggc gccatcgaag actgaggcga aagcctgaaa
     3241 caaaaaaagc ccgcttctca gcgggctttt tcatgtcaag gtccggcgag cgtcagaaac
     3301 gctcgacctc ggcctgttcc ttgagctgct ggcggtacgc ggcaaaatcc tgctgaccgg
     3361 cacgcgaggc caggaagcga cgatagctga tcttctcctc gtcgctcagc tcggccttgg
     3421 ccaggctgac gccatccagg cgcagcacca cgtagtcacc attgttcagg ctgacgccgg
     3481 cgtaggtcgg cttgccgtct tctccgggct tggccatgcg gaacagcttc tgcaggattt
     3541 ccggcgccac gccgtcctgg ctgcgaccgg cggcctggat cactttccag ccctcgccac
//
LOCUS       DATIHC010000108         1872 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_16466, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000108 DATIHC010000000
VERSION     DATIHC010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1872
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16466"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..87)
                     /locus_tag="VLF16_01790"
     CDS             complement(<1..87)
                     /locus_tag="VLF16_01790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP-2 family sterol carrier protein"
                     /protein_id="HSX69636.1"
                     /translation="MSSVADTINTMKSKFNASAAAGLDLVFQF"
     gene            complement(148..858)
                     /locus_tag="VLF16_01795"
     CDS             complement(148..858)
                     /locus_tag="VLF16_01795"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017737251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HSX69637.1"
                     /translation="MGSIYLIRHGQASFGADDYDVLSPLGVRQAEVLGEHLAELGIVF
                     DRCLSGSLRRQQHTASAALQRCVAAGLNAPELEIDPAFNEFDAEAVIRNLLPAMLPEE
                     PDALEILRHPKENRAAFQHLFARIIRRWVSGQYDEPGHASWQGFVDTVHGGLQRLLAH
                     AERGHNIAVFTSGGTITALLHALTGVPAEKAFELNWQIVNTSLSRLIFRGDEATLASF
                     NSRVHLELLKTPELITYR"
     gene            1070..>1872
                     /gene="sohB"
                     /locus_tag="VLF16_01800"
     CDS             1070..>1872
                     /gene="sohB"
                     /locus_tag="VLF16_01800"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HSX69638.1"
                     /translation="MEFLLDYADFLLRTLTVVVAIIVVLLTIAALRGKGRGKGSGHLQ
                     VSKLNEFYKGLRQRLEHELLDKAQLKAQRKAEAKQAKLDKKEGTHKPRVFVLDFDGDI
                     KASATDNLRHEVTALLSMATAQDEVVLRLESGGGVVHGYGLAASQLARIRQAGVPLTV
                     CVDKVAASGGYMMACIGDRVLSAPFAILGSIGVVAQLPNIHRLLKKHDIDVEMLTAGE
                     FKRTLTILGENTEKGREKFQEDLETTHELFKNFVARYRPQLNIDEIATG"
BASE COUNT          331 a          567 c          649 g          325 t
ORIGIN      
        1 gaactggaat accaggtcca ggccggcggc agcgctggcg ttgaacttgg acttcatggt
       61 gttgatggtg tcggcaacgg agctcatggt ttctgtcctt tttctcaagg gttgctggcg
      121 gccttgcggg ccgctgtggg ccggtactca gcgataggtg atgagttccg gggtcttcaa
      181 cagctccaaa tgcacacggc tgttgaagga agccagggtc gcctcgtcgc cgcggaagat
      241 caggcgcgac agcgaggtgt tgacgatctg ccagttgagt tcgaaggcct tctcggccgg
      301 tacgccggtg agcgcatgga gcagggcggt gatggtgccg ccggaggtga acacggcgat
      361 gttgtggcca cgctcggcat gcgccagcag gcgctgcagg ccgccgtgca ccgtgtcgac
      421 gaaaccctgc caggaggcat gcccgggctc gtcatactgg ccgctgaccc agcggcggat
      481 gatgcgcgcg aacaggtgct ggaaggcggc gcggttttcc ttggggtggc gcaggatttc
      541 cagcgcgtcc ggttcttccg gcagcatggc cggcagcagg ttgcggatca ccgcctcggc
      601 atcgaattcg ttgaaggccg ggtcgatttc cagctccggc gcgttcaggc cggcggccac
      661 gcagcgctgc agggcggcgc tggcggtatg ttgctggcgg cgcaggctgc cgctcaggca
      721 gcgatcgaag acgatgccga gctcggcgag gtgctcgccg agcacttcgg cctgacgcac
      781 gccgagcggc gacagcacgt cgtagtcatc ggcaccgaat gaggcctggc catgtcgtat
      841 cagatagatg ctgcccacgt ccgcaatcga tcccggcggg ttgaagtttc gcgagggtag
      901 ggccggagcc cggcccctgt caacggaaaa acatacgctt gtttgaattg gtgcgaggcc
      961 actcgcgcat ggcccgctgc ggttggccgg cgggcttcgg cgccgttatg cttgggcctg
     1021 gcgagccgcc gttcggcggc atcgcttcac aatagacgag ggagaacctg tggagtttct
     1081 gttggattac gcggacttcc tgctccgcac cctgacggtc gtggtcgcca tcatcgtggt
     1141 gctgctgacc atcgccgcgc tgcgcggcaa gggccgtggc aagggctccg gccacttgca
     1201 ggtgagcaag ctcaacgaat tctacaaggg cctgcgccag cgcctggagc acgagctgct
     1261 ggacaaggcg cagctcaagg cccagcgcaa ggccgaggcg aagcaggcca agctggataa
     1321 gaaggaaggc acgcacaagc cacgggtgtt cgtgctcgac ttcgacggcg acataaaggc
     1381 ctcggccacc gacaacctgc gccacgaggt caccgcgctg ttgagcatgg ccaccgccca
     1441 ggatgaagtg gtgctgcgcc tggaaagcgg cggtggcgtg gtccacggct acggcctggc
     1501 tgcctcgcaa ctggcacgca tccgccaggc cggcgtaccg ctgaccgtat gcgtggacaa
     1561 ggtcgccgcc agcggcggct acatgatggc gtgcatcggc gatcgagtgc tctcggcgcc
     1621 cttcgccatc ctcggttcca tcggcgtggt ggcgcagttg ccgaatatcc atcgcctgct
     1681 gaagaagcac gacatcgacg tcgagatgct taccgccggc gagttcaagc gcacgctgac
     1741 catcctgggt gagaacaccg agaagggtcg cgagaaattc caggaggatc tggaaaccac
     1801 ccacgagctg ttcaagaact tcgtggcccg ctaccgcccg cagctgaaca tcgacgagat
     1861 cgccaccggc ga
//
LOCUS       DATIHC010000109         1583 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35444, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000109 DATIHC010000000
VERSION     DATIHC010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35444"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..255)
                     /locus_tag="VLF16_01805"
     CDS             complement(<1..255)
                     /locus_tag="VLF16_01805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69639.1"
                     /translation="MAFFTAASKADFQQQLRAALAQHVGDEALPQVALFAEQFFGIVS
                     LDELTQRRLGDLAGSTLSSWRLLERFDAAKPVVRVYNPDYE"
     gene            514..1401
                     /locus_tag="VLF16_01810"
     CDS             514..1401
                     /locus_tag="VLF16_01810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009621238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1353 domain-containing protein"
                     /protein_id="HSX69640.1"
                     /translation="MLSPLRRRLVLHFGNLLITAIGLALLGLAAWLRPGLVQPLLWAG
                     VPVYFGVLLPRWFGRRERLRRAAVTLAADQEKWGFASRNHWGPWLNYIDQPYLRRCPE
                     FAGRYFYGEWLVIHDGLLIVNPGHSTVDLARQEVRYDFARPTTYAWDGCTPKVPFYWL
                     AIIGIPDWWEKPHPVLQLRGGAICEAEVFWPLAHPASLVHDALYQYLNAAPVGKHEAD
                     LLFFRMLREAGMAWPLAFAYYLAVRLLGAPEVRGPRPGNSLLRCVGELPGDGSAAPAR
                     SGTGRQSPAEDMPATAPMQ"
     gene            1464..>1583
                     /locus_tag="VLF16_01815"
     CDS             1464..>1583
                     /locus_tag="VLF16_01815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003247242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSX69641.1"
                     /translation="MEHREALVALRQFLATQILGQDKLVERLLIALLADGHMLV"
BASE COUNT          231 a          537 c          540 g          275 t
ORIGIN      
        1 ctcgtaatcg gggttgtaca cccgcaccac cggcttggcg gcgtcgaaac gctccagcag
       61 gcgccaggaa gacagggtgc tgccggccag gtcgccgagg cggcgctggg tgagttcatc
      121 gagggaaacg atgccgaaga actgttcggc gaagagcgcc acttgtggca gcgcctcgtc
      181 gccgacgtgc tgggccaggg ccgctcgcag ttgctgctgg aagtcggctt tgctggccgc
      241 ggtgaagaac gccatggtaa tgctccactg gacttgttgt tcgtgaggtg acgcgctttg
      301 cgcggggttc aaggcagtct aggcgatccc cggaacccga cggtgcgcgc gtcgaccatc
      361 aggtcacggc aagcttagcg acagcccatg gcggctggat tgcggcggcg cgacatattc
      421 gttcatcgac cgacgatggc gcgccggcgc gtctgccacg ggctcggcgc cggcatgcta
      481 tgttgcgcct ccacgacctc cggaagggaa tgcatgctgt ctccactccg ccgccgtctg
      541 gtcctccatt tcggcaacct gctgatcacc gcgatcggcc tggccctgct cggcctggcc
      601 gcgtggctgc gcccgggcct ggtgcagccg ctactgtggg ccggcgtgcc ggtctacttc
      661 ggcgtgctgc tgccacgctg gttcgggcgc cgcgagcgcc tgcgccgggc cgccgtcacg
      721 ctggccgccg accaggaaaa atggggcttc gccagccgca atcactgggg gccctggctc
      781 aactacatcg accagccgta cctgcgccgc tgccccgagt tcgccgggcg ctacttctat
      841 ggcgagtggc tggtgatcca cgacggcctg ctgatcgtca atccgggcca ctcgaccgtg
      901 gacctcgcgc gccaggaggt tcgctacgac ttcgcccgtc ccaccaccta cgcctgggac
      961 ggctgcacgc ccaaggtacc gttctactgg ctggcgatca tcgggattcc cgactggtgg
     1021 gaaaagccgc acccggtgct gcagctgcgc ggcggtgcga tctgcgaggc ggaggtgttc
     1081 tggccgctgg cgcacccggc gagcctggtg cacgacgccc tgtaccagta cctgaacgcc
     1141 gcgccggtgg gcaagcacga ggccgacctg ctgtttttcc gcatgctgcg cgaagccggc
     1201 atggcctggc cgctggcatt cgcctactac ctggccgtac gcctgctcgg cgcgccggag
     1261 gtgcgcggcc cgcggccggg caacagcctg ttgcgctgcg ttggcgagct gccgggcgat
     1321 ggctcggcgg cgccggcgcg aagcggaact ggtcggcaga gcccggccga agacatgcca
     1381 gccacggctc cgatgcagta gagttagcag cccctttggg gtgaattcga cgactcgtca
     1441 gtccctttcc aggaaaattc ccgatggaac atcgtgaggc gctcgtcgcg ctgcggcaat
     1501 ttctcgccac ccagattctc ggccaggaca agctcgtcga gcgcctgctg atcgccctgc
     1561 tcgccgacgg ccacatgctg gtg
//
LOCUS       DATIHC010000110         1635 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42285, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000110 DATIHC010000000
VERSION     DATIHC010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1635
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42285"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..210)
                     /locus_tag="VLF16_01820"
     CDS             complement(<1..210)
                     /locus_tag="VLF16_01820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HSX69642.1"
                     /translation="MFKKSLAALTLGAALFAGQAMAADYAIDKQGQHAFINFKISHLG
                     YSWLYGTFKDFDGSFSFDAKAPEASK"
     gene            complement(229..783)
                     /locus_tag="VLF16_01825"
     CDS             complement(229..783)
                     /locus_tag="VLF16_01825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HSX69643.1"
                     /translation="MQWRNSNSTYGLVSILLHWLVALAVFGLFGLGLWMVGLDYYSTW
                     YRTAPDLHKSIGILLFVVMLGRVAWRLVSPPPPAPANHGAATRLASKAGHGFLYLALF
                     VLMISGYLISTADGRGIAVFGLFEVPATLTGIPDQADVAGAIHEYLAWALVIFAGLHA
                     LAAFKHHFVDRDATLVRMFGRTGK"
     gene            964..>1635
                     /locus_tag="VLF16_01830"
     CDS             964..>1635
                     /locus_tag="VLF16_01830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSX69644.1"
                     /translation="MSQNAQWMQRDLAVLWHPCTQMKDHERLPLIPIKRGEGVWLEDF
                     DGKRYLDAVSSWWVNVFGHGNPRINARIREQLESLEHVMLAGFTHAPVVELSERLVRI
                     TPAGLNRVFYADNGSSGIEVALKMSHHYWINTGKPEKKRFVTLTNSYHGETVAAMSVG
                     DVALFTDTYKALLLDTIKVPSPDCYLRPEGMGWEEHSRTLFAAMEQTLAEHHHEVAAV
                     IVEPLI"
BASE COUNT          328 a          499 c          549 g          259 t
ORIGIN      
        1 cttgctggct tccggcgcct tggcgtcgaa gctgaagctg ccgtcgaagt ccttgaaggt
       61 gccgtaaagc cagctgtagc ccaggtggct gatcttgaag ttgatgaagg cgtgctggcc
      121 ctgcttgtcg atggcgtagt cggcagccat ggcctggccg gcgaacagtg cggcacccag
      181 ggtcagggcg gcgagggatt ttttgaacat taacggtctc cttgtgggtt acttgccggt
      241 gcgcccgaac atgcgcacca gggtggcgtc acggtcaacg aaatggtgct tgaacgccgc
      301 cagggcatgc aggccggcga agatcaccag ggcccaggcg aggtactcgt ggatagcgcc
      361 ggcgacatcg gcctgatccg gaatgccggt cagcgtggcc ggcacctcga acaggccgaa
      421 cacggcgatg ccgcggccgt cggcggtgga aatcaggtag ccgctgatca tcagtacgaa
      481 cagggccagg tagagaaacc catggccggc cttggaggcc aggcgggtgg ccgcgccatg
      541 gttggccggc gcgggcggcg gcgggctgac caggcgccag gcaacacggc cgagcatgac
      601 cacgaacagc aggatgccga tgctcttgtg caggtccggc gccgtgcggt accaggtgct
      661 gtagtagtcc aggccgacca tccacaggcc gaggccgaac aggccgaaca ccgccagcgc
      721 caccagccag tgcaacagga tgctgacaag gccgtaggtg gaattcgagt tgcgccactg
      781 catgaaagaa atccgaaacg gggaatggga gaagcctagc ggcaaacgca tcgattaaaa
      841 gcggaatttt tcgctgcgaa atatcgagta accagatgat tgctcgagcc cggatgcgcc
      901 gtgacggcct gtccgcacca gccttctgat agtctcacgc ccctgtcgta gcggagatga
      961 gtgatgagcc agaacgccca atggatgcag cgcgacctcg ccgtgctgtg gcacccctgc
     1021 acccagatga aggatcacga gcgcctgccg ctgatcccga tcaagcgcgg cgaaggcgta
     1081 tggctggaag acttcgacgg caagcgctac ctcgacgcgg tcagctcctg gtgggtcaac
     1141 gtgttcggcc atggtaaccc gcgcatcaat gcgcgcatca gggagcagct ggagagcctc
     1201 gagcacgtga tgctggccgg cttcacccac gcgccggtgg tcgagctatc cgagcgcctg
     1261 gtgcgcatca ccccggcagg gctgaaccgg gtgttctacg ccgacaacgg ctcctcgggc
     1321 atcgaggtgg cgctgaagat gagccaccac tactggatca acaccggcaa gcccgagaag
     1381 aagcgcttcg tcaccctgac caacagctac cacggcgaga cggtggcggc catgtcggtg
     1441 ggcgacgtgg cgctgttcac cgacacctac aaggccctgc tgctcgacac gatcaaggtg
     1501 ccgagcccgg actgctacct gcgtcccgag ggcatgggct gggaagagca ttcgcgcacc
     1561 ctgttcgccg ccatggagca gaccctggcc gagcatcatc acgaggtcgc cgcggtgatc
     1621 gtcgagccgc tgatc
//
LOCUS       DATIHC010000111         2517 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5053, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000111 DATIHC010000000
VERSION     DATIHC010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2517
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5053"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..439)
                     /locus_tag="VLF16_01835"
     CDS             complement(<1..439)
                     /locus_tag="VLF16_01835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HSX69645.1"
                     /translation="MLLLLAEYLQQFHTGFGVFQYLTLRGILGVLTALALSLWLGPWM
                     IRTLQIRQIGQAVRNDGPQSHLSKKGTPTMGGALILTAIAVSTLLWADLANRYVWVVL
                     AVTLAFGAIGWVDDYRKVIEKNSRGLPSRWKYFWQSVFGLAAAV"
     gene            complement(442..1815)
                     /gene="murF"
                     /locus_tag="VLF16_01840"
     CDS             complement(442..1815)
                     /gene="murF"
                     /locus_tag="VLF16_01840"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0047480 -
                     UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HSX69646.1"
                     /translation="MLKPLLLSEVAQALDALLVGADVAFSAVSTDSRKIEAGQLFIAL
                     VGPNFDGHDYLTDVAAKGAVAVLVQREVADAPLPQLLVADTRIALGQLGALNRAAFAK
                     PLAAITGSSGKTTVKEMLASILRAGLNGPVLATRGNLNNDLGAPLTLLELAPEHVGAV
                     IELGANHVGEIAYTVDLTKPDVAIITNAGLAHVGEFGGPEKIVEAKGEILEGLSEQGI
                     AVLNRDDKAFATWQARAQGRQVLSFALHEQSADVRAAELWRDARGCAGFALAGVAGEA
                     RIQLNLLGEHSVANALAAAAAAHALGVPSVGIRQGLEALQPVKGRAVASLAPNGVRVI
                     DDSYNANPLSMCAAVDILAGFSGRTVLVLGDMGELGEWAEQGHRDVGAHAAGKVDALY
                     AVGPLMAHAVAAFGEKGRHFAEQASLIDALRGESGDTTILIKGSRSAAMDKVVDALLQ
                     RASGEAH"
     gene            complement(1808..>2517)
                     /locus_tag="VLF16_01845"
     CDS             complement(1808..>2517)
                     /locus_tag="VLF16_01845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cyanophycin synthetase"
                     /protein_id="HSX69647.1"
                     /translation="YSLSDASAYLFCREARFDDHGVWAHIVTPQGEGLLRSPLLGRFN
                     LSNLLAVVGALLGLGHGLDEILRVLPQLQGPVGRMQRFGGEDCPLVVVDYAHTPDALE
                     KVLEALRPHVTGRLLCLFGCGGDRDRGKRPLMAQVAERLADVVLVTDDNPRSEDPAVI
                     VADIRAGFAKPEAAEFVHGRGDAIARLIAAARVGDVVLLAGKGHEDYQEIAGVRHPFS
                     DLEETTKALQAWEAAHA"
BASE COUNT          398 a          869 c          875 g          375 t
ORIGIN      
        1 agacggcggc ggccaggccg aacaccgact gccagaagta tttccagcgg ctcggaaggc
       61 cgcgcgagtt cttctcgatc accttgcggt agtcatcgac ccagccgatg gcgccgaacg
      121 ccagggtcac ggccagcacc acccacacgt agcggttggc caggtcggcc cagagcaggg
      181 tgctcacggc gatggcggtg aggatcaacg cgccgcccat ggtcggcgtg cccttcttcg
      241 acaggtgcga ctgcgggccg tcgttgcgca cggcctggcc gatctggcgg atctgcaggg
      301 tgcggatcat ccagggcccc agccacagcg acagggccag cgcggtgagc acgccgagaa
      361 tcccgcgcag cgtcaggtac tggaacaccc cgaagccggt gtggaactgt tgcaggtact
      421 cggccagcag cagcagcatg attagtgagc ctccccggat gcccgttgca gcagcgcgtc
      481 gacgaccttg tccatcgctg cgctgcgcga gcctttaatt agaatggttg tatcgcccga
      541 ctcgccgcga agcgcgtcga tcaggctggc ttgttcggca aaatgacggc ctttttcgcc
      601 gaaggccgcg acggcgtgtg ccatcagtgg ccccacggcg tagagcgcat cgaccttacc
      661 ggcggcgtgg gcgccgacat cgcgatggcc ctgctcggcc cactcgccca gctcgcccat
      721 gtctcccagc accaggacgg tgcgaccgga gaagccggcg agtatatcca ccgccgcgca
      781 catggacagc gggttggcgt tgtagctgtc gtcgatcacc cgcaccccgt tcggcgccag
      841 gctggctacg gcgcggccct tgaccggctg cagcgcttcc aggccctggc gaatcccgac
      901 cgacggcacg ccgagggcgt gcgcggcggc agcggcggcc agggcattgg ccacgctgtg
      961 ctcgcccagc agattgagct gaatgcgcgc ctcgccggcg acgccggcca gggcgaagcc
     1021 ggcgcagcca cgggcgtcgc gccacagctc ggcggcgcgc acatcggcgg attgttcgtg
     1081 cagggcgaag ctcagcacct ggcggccctg ggcgcgtgcc tgccaggtgg cgaaggcctt
     1141 gtcgtcacga ttgagcacgg cgatgccctg ctcgctcagg ccctcgagga tctcgccctt
     1201 ggcctcgacg atcttctccg gcccgccgaa ctcgcccaca tgggccagac cggcattggt
     1261 gatgatcgcc acgtccggct tggtcaggtc gacggtgtag gcgatctcgc cgacatggtt
     1321 ggcgcccagc tcgatcaccg ccccgacgtg ctcgggcgcc agttccagca gggtcagcgg
     1381 cgcgccgagg tcgttgttga ggttgccgcg ggtggccagc accgggccgt tcaggccggc
     1441 gcgcaggatg ctggcgagca tttccttgac ggtggtcttg ccgctggagc cggtgatggc
     1501 ggccaggggc ttggcgaagg cagcgcggtt cagcgcaccg agctggccca gggcgatgcg
     1561 ggtgtcggcg accagcagct gcggcagcgg cgcgtcggcg acctcgcgct gcaccaagac
     1621 ggcgacggcg cccttggcgg cgacatcggt cagataatcg tggccgtcga agttcggccc
     1681 gaccagggcg atgaacaact gaccggcctc gatcttgcga ctgtcggtgg agaccgcgga
     1741 gaacgccacg tcggcgccta ccaggagggc atccagggcc tgagccacct cgctcagcag
     1801 cagcggctta agcatgggcg gcctcccagg cctgcagggc cttggtggtt tcttccagat
     1861 cggagaacgg gtggcgcacg ccggcgatct cctgataatc ctcgtgcccc ttgcccgcca
     1921 gcaggaccac gtcgccaacg cgtgccgcgg cgatcaggcg ggcgatggca tcgccgcggc
     1981 catgaacgaa ctcggcggcc tcgggcttgg cgaagccagc gcggatatcc gcgacgatca
     2041 cggccgggtc ttcgctgcgc gggttgtcgt ctgtcaccag cacaacgtcg gcgaggcgct
     2101 cggccacttg ggccatcagc gggcgcttgc cgcggtcacg gtcgccgccg cagccgaaca
     2161 ggcacagcag ccggccggtg acatgcgggc gcagcgcctc gagcaccttc tccagcgcat
     2221 ccggggtatg cgcgtaatcg accaccacca atgggcagtc ctcgccaccg aagcgctgca
     2281 tgcggccgac cggcccctgc agctgcggca gcacgcgtag aatctcgtcc aggccatgcc
     2341 ccagaccgag cagcgcgccg accacggcca gcaggttgct cagattgaag cggccgagca
     2401 gcgggctgcg cagcagtccc tcgccctgcg gcgtgacgat gtgcgcccac acgccatgat
     2461 cgtcgaagcg cgcctcgcgg cagaacaggt aggcgctggc gtcgctcagg ctgtagc
//
LOCUS       DATIHC010000112         2847 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7240, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000112 DATIHC010000000
VERSION     DATIHC010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2847
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7240"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1140
                     /locus_tag="VLF16_01850"
     CDS             <1..1140
                     /locus_tag="VLF16_01850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017676785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HSX69648.1"
                     /translation="LPWRLGLGQLLRHPLAAAGQSLAFGLILLAMALIALLRGELLDT
                     WQDQLPDQAPNHFALNVLPEEREAFAARLAQLSPHPAPLYPIVAGRLTLINGEPVRDI
                     VSKDSRGERAIQRDLSLTWAASLPDGNQLLSGQWWDVLLEAERPGVSVESELAESLGL
                     KLGDELTFSVGGMERKARVSSLRQVEWDSFQPNFYMIFEPGTLQDLPATYLTSFYLPP
                     QSEQQLVALSRQFPAVTLLQVEALLEQLRSIMAQVSIAVEYVLLFVLAAGLTVLFAGL
                     QATLDERLRQGALLRALGAERRLLLRARRAEFGLLGAGSGLLAAVGTELASFLLYRYA
                     LELDWQPHPWLLLLPLIGALLVGGAGVWGTRRALNASPLTVLREV"
     gene            1181..1693
                     /gene="greB"
                     /locus_tag="VLF16_01855"
     CDS             1181..1693
                     /gene="greB"
                     /locus_tag="VLF16_01855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003711 - transcription elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006354 - DNA-templated transcription
                     elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HSX69649.1"
                     /translation="MSRYRPPRTAGTPLITPEGEARLRAELHELWHVRRPQVTQAVSE
                     AAALGDRSENAEYIYGKKMLREIDSRVRFLTKRLENLKVVNARPADPNKVYFGAWVTL
                     EDDDGAESRYRIVGPDELDLRQGLISIDSPLARALVGKALDAEVRVQTPGGEQAFYIT
                     AIDYPGFSAG"
     gene            complement(1680..1991)
                     /locus_tag="VLF16_01860"
     CDS             complement(1680..1991)
                     /locus_tag="VLF16_01860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSX69650.1"
                     /translation="MSCPRTHLYFSPLPRTAVNRHPHVLLVGSHQPRLLKSLEGWPKH
                     WPGARNFLIRFAGAQAQELARLPADAFDLVVVGAEARPVNHELIGQLVRVARQGLISL
                     R"
     gene            2158..2655
                     /gene="thpR"
                     /locus_tag="VLF16_01865"
     CDS             2158..2655
                     /gene="thpR"
                     /locus_tag="VLF16_01865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020306665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008664 - 2'-5'-RNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2',3'-cyclic phosphodiesterase"
                     /protein_id="HSX69651.1"
                     /translation="MLRLFFALPCPPAVATQIDAWRRSRAFSGRLVPTANLHLTLAFL
                     GHQPEERLALLQQLPPQLPLTEMSFELELDRLDCWHGGLLHLAPGRVPERLPRLVEGL
                     NALLFGNGLPVEPRTYRPHLTLARESSRPERSDCPGFSWRADELVLYRSEQGRYLPLS
                     RWPLG"
BASE COUNT          437 a          994 c          944 g          472 t
ORIGIN      
        1 ctgccctggc gtctcggcct cggccagctg ttgcgccatc cgctcgccgc cgccggccag
       61 tcgctggcct tcggcttgat tctgctggcc atggcgctga tcgcgctgct gcgcggcgaa
      121 ctgctcgaca cctggcagga ccagttgccc gatcaggcgc ccaatcactt cgccctcaat
      181 gtgctgccgg aagagcgtga ggcctttgcg gcacgtctcg cccagctgtc gccgcacccg
      241 gcgccgctct acccgatagt cgccgggcgc ctgaccctga tcaacggcga gccggtgcgc
      301 gacatcgtca gcaaggacag ccgcggcgag cgcgccatcc agcgcgacct gagcctgacc
      361 tgggcggcgt cgctgccaga cggcaaccag ctgctgagcg gacaatggtg ggatgtgctg
      421 ctcgaggccg aacgccccgg cgtctcggtc gagtcggaat tggccgagag cctgggcctg
      481 aagcttggcg acgagctgac cttcagcgtc ggcggcatgg aacgcaaggc gcgggtcagc
      541 agcctgcgcc aggtggagtg ggacagcttc cagccgaact tctacatgat cttcgagccg
      601 ggcaccctgc aggacctgcc cgccacctac ctgaccagct tctatttgcc gccgcagagc
      661 gagcagcaac tggtagcgct gtcgcggcag ttcccggccg tcaccctgtt gcaggtcgag
      721 gcgttgctgg agcagctgcg cagcatcatg gcccaggtca gcattgcggt ggagtacgtg
      781 ctgctgttcg tcctcgccgc cggcctcacc gtgttgttcg ccggcctgca ggcgaccctc
      841 gacgagcgct tgcgccaagg ggcgctgctg cgtgcgctgg gcgccgagcg gcgtctgctg
      901 ctgcgcgccc ggcgcgccga gttcggtctg ctcggcgccg gaagcggcct gctggcggcg
      961 gtcggcaccg aactggccag cttcctgctc tatcgctacg cgctggagct ggattggcag
     1021 ccgcatccct ggctgctgct gttgccgctg atcggcgcac tgctggtggg cggagccggc
     1081 gtctggggca cgcggcgcgc gctgaatgcc tcgccgctga ccgtgctgcg cgaagtctga
     1141 gcttgctaga atcgcccgac ctcaagacct cgcaagcacc atgagccgtt atcgtccgcc
     1201 ccgcaccgcc ggcactccgc tgatcactcc cgaaggcgag gcgcgcctgc gcgccgaatt
     1261 gcatgagttg tggcacgtgc gccggcctca ggtgacccag gcggtcagcg aggccgcggc
     1321 gcttggcgac cgctcggaga acgccgagta catctacggc aagaagatgc tgcgcgagat
     1381 cgacagccgc gtgcgcttcc tcaccaagcg tctggaaaac ctgaaggtgg tgaacgcccg
     1441 cccggccgac ccgaacaagg tctacttcgg cgcctgggtg accctggaag acgacgatgg
     1501 cgccgagtcg cgctaccgca tcgtcggccc cgacgagctg gatctcaggc aggggctgat
     1561 cagcatcgac tcgccgctgg cccgcgctct ggtcggcaag gcgctggacg ccgaagtacg
     1621 ggtgcagacg cccggcggcg agcaggcgtt ctacatcacc gccatcgact atcccgggtt
     1681 cagcgcaggc tgatcaggcc ctgacgagcg acgcgcacca gctggccgat cagctcgtgg
     1741 ttcaccgggc gcgcttcggc gcccaccacc accagatcga aggcgtccgc cggcaggcgt
     1801 gccaactcct gcgcctgggc gccggcaaag cggatcagga aattgcgtgc acccggccaa
     1861 tgcttgggcc agccttccag gctcttgagc agacgcggct gatggctgcc gaccagcaga
     1921 acatgcggat ggcgattgac cgcggtacgc ggcagggggg aaaaatacag atgggtgcgc
     1981 gggcaactca tggatgcagt ctcagcctcg taatcccgcc ggactgcggt gggaggcgac
     2041 accggccagc gctttagcgg tattcgccca accgggcggc gccccgcaag ttgctcttaa
     2101 atcggcgcca tggggtgcga tcctaggaat gccacccggt gctgtcaagg taagcccatg
     2161 ctgcgactgt tcttcgccct gccctgtccg ccggctgtcg ccacgcagat cgacgcctgg
     2221 cggcgcagcc gagccttcag cggacgtctc gtaccgacgg ccaacctgca cctgaccctg
     2281 gctttcctgg gccatcagcc cgaggagcgt ctggcgctgc tgcagcaact gccgccgcag
     2341 ctgccgctga ccgaaatgtc cttcgagctt gagctggatc gtctcgactg ctggcacggc
     2401 ggcctgctcc atctcgcccc tggccgagtg cccgagcggt tgccgaggct ggtcgaaggg
     2461 ctcaatgccc tgttgttcgg gaacggcctg ccggtcgagc cgcgcaccta ccgcccgcac
     2521 ctgaccctgg cgcgcgagag ctcccgtccc gaacgctccg actgccccgg tttctcttgg
     2581 cgagcggacg agctggtgct ctaccgctcc gagcagggcc gatacctgcc gctgtcccgc
     2641 tggccgctgg gctgagcgcc gaacagacgt gccccggacc gtcgccctcc ccgcgagggg
     2701 gaatggctgt ttctcccggt aacaataccc agcgcagcgg caaagcccgg ttcacggggc
     2761 ctgtgtcgca aacggccgtt tagagccttc gttctaaaaa tgctggaatt ggcatagatc
     2821 ctgccccgat tcgccggctg cagtacc
//
LOCUS       DATIHC010000113         2177 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_16475, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000113 DATIHC010000000
VERSION     DATIHC010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16475"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            60..1133
                     /gene="queG"
                     /locus_tag="VLF16_01870"
     CDS             60..1133
                     /gene="queG"
                     /locus_tag="VLF16_01870"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003246520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0052693 - epoxyqueuosine reductase
                     activity [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HSX69652.1"
                     /translation="MPDSPLDLAQLAQSIKDWGRELGFQQVGIADVELGEHEAHLQRW
                     LEAGYQGEMDYMAAHGSKRSHPDELVPGTLRVVSLRMDYLPGDTRMAERLAQPEQAYV
                     SRYALGRDYHKLVRKRLQQLAERIQAAIGPFGYRAFVDSAPVLEKAIAEKAGLGWIGK
                     NTLVLNRKAGSWFFLGELFVDIPLPVDAPHGSEHCGRCSACLDVCPTNAFVGPYVLDA
                     RRCISYLTIELKGAIPEELRAPIGNRVFGCDDCQIVCPWNRFARPTEQGDFQPRHGLD
                     SGGLVELFLWTQEEFLTRTEGSPLRRAGYERWLRNLAVGLGNAPSTIPVLQALEARRE
                     HPSELVREHVQWALARHRQRGSR"
     gene            complement(1379..1924)
                     /gene="orn"
                     /locus_tag="VLF16_01875"
     CDS             complement(1379..1924)
                     /gene="orn"
                     /locus_tag="VLF16_01875"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007161168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000175 - 3'-5'-RNA exonuclease activity
                     [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HSX69653.1"
                     /translation="MPQNPNNLIWIDLEMTGLEPERDVIIEIATIVTDSELNVLAEGP
                     VMAIHHSDAVLAGMDEWNTRTHGESGLTQRVRDSAIDTAAAEAQTIAFLEQWVPKGKS
                     PICGNSIGQDRRFLYKYMPALEAYFHYRYLDVSTLKILAGMWAPQVKDSFQKQGAHLA
                     LDDIRESIAELRHYRQHFLKI"
     gene            complement(1985..>2177)
                     /locus_tag="VLF16_01880"
     CDS             complement(1985..>2177)
                     /locus_tag="VLF16_01880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017246540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSX69654.1"
                     /translation="GGYDVVYCFLSPAPMAELWTKARSEMRPGSLLISNSFEIPGVAP
                     GEVIELNDWRASRLLLWHL"
BASE COUNT          347 a          750 c          719 g          361 t
ORIGIN      
        1 gcttatgggg ctgaggtctg gcagaattat acccatctcc cccgccccgc cgtcccatca
       61 tgcccgactc cccgctcgac ctcgctcaac tggcgcagtc catcaaggac tggggccgag
      121 agctgggctt ccagcaggtg ggcatcgccg acgtggagct gggcgagcac gaggcgcacc
      181 tgcaacgctg gctggaggcc ggctatcagg gcgagatgga ctatatggcc gcccatggct
      241 cgaaacgttc ccacccggac gaattggtgc ccggcaccct gcgggtggtc tcgctgcgca
      301 tggactacct gcccggcgac acccggatgg ccgagcgcct ggcccagccg gagcaggcct
      361 acgtgtcgcg ctacgccctc ggccgcgact accacaagct ggtgcgcaag cgcctgcaac
      421 aactggccga gcgtatccag gccgccatcg gcccgttcgg ctaccgcgcc ttcgtcgaca
      481 gcgcgcccgt gctggagaag gccatcgcgg agaaggccgg cctgggctgg atcggcaaga
      541 acaccctggt gctcaaccgc aaggccggca gctggttctt cctcggcgag ctgtttgtcg
      601 acattcccct gccggtggac gccccgcacg gcagcgagca ctgcggccgc tgcagcgcct
      661 gcctggacgt gtgcccgacc aatgccttcg tcggccccta cgtgctggac gcgcggcgct
      721 gcatttccta cctgaccatc gagctgaagg gcgccattcc cgaggagctg cgcgcgccca
      781 tcggcaaccg ggtattcggc tgcgatgact gccagatcgt ctgcccgtgg aaccgcttcg
      841 cccgccccac cgagcagggc gacttccagc cgcgccacgg cctggacagc ggcggcctgg
      901 tcgagctgtt cctgtggacc caggaggaat ttctcacccg caccgaaggc tcgccgctgc
      961 gccgcgccgg ctacgagcgc tggctgcgca acctggccgt ggggctgggc aacgcgccct
     1021 cgaccattcc ggtgctgcag gcgctggagg cacgccgcga gcatccgtcg gaactggtgc
     1081 gcgagcatgt gcagtgggcg ctggcgcgcc accggcaacg cggaagcagg tagggtgcgc
     1141 cgtgcgcacc cagggacact gtcggtaaac cggcggtgcg cacggcgcac cctacggaag
     1201 gctgggctta cacctcagga agcacggtag cccggatgca atccgcaggc ggaatcccct
     1261 gcgccccagg ttgcctccgg gcgacgattg caggcgcgac atctgctgcc aagccctcgc
     1321 cgcaccccgg tttgcgagca aagtaccggg cgccttccgc tcctacgaaa gagccgggtt
     1381 agatcttcaa gaagtgctgg cgatagtgcc gcagctcggc gatggattcg cggatatcgt
     1441 ccagcgccag gtgcgcgccc tgcttctgga acgaatcctt gacctgcgga gcccacatgc
     1501 cggcgaggat cttcagggtc gacacgtcca ggtagcggta gtggaagtag gcctccaggg
     1561 ccggcatgta cttgtagagg aagcgccgat cctggccaat gctgttgcca cagatgggcg
     1621 acttgccctt gggcacccac tgctcgagga aggcgatggt ctgcgcctcg gccgccgcgg
     1681 tatcgatggc gctgtcgcgc acgcgctggg tcaggccgct ctcgccgtgg gtgcgggtat
     1741 tccactcgtc catcccggcc agcaccgcgt cgctgtggtg gatggccatc accgggccct
     1801 cggccagcac gttcaactcg ctgtcggtga cgatggtggc gatctcgatg atcacatccc
     1861 gctccggctc cagcccggtc atttccaggt cgatccagat caggttgttg gggttctgcg
     1921 gcatgacgtc tgctcctgtg cgaatgccgg gcagtttagc cgtttgtgaa cgccgccggg
     1981 cccgttatag gtgccagagc aacagccgcg aagcgcgcca gtcgttcagt tcgatgacct
     2041 cgcccggcgc cacgccaggg atctcgaagc tgttgctgat cagcaggctg cccgggcgca
     2101 tctcgcttcg ggccttggtc cacaactcgg ccatcggcgc cggcgagagg aagcagtaga
     2161 ccacgtcgta gccaccc
//
LOCUS       DATIHC010000114         5122 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_32995, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000114 DATIHC010000000
VERSION     DATIHC010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5122
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32995"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..954
                     /gene="pqqE"
                     /locus_tag="VLF16_01885"
     CDS             <1..954
                     /gene="pqqE"
                     /locus_tag="VLF16_01885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0018149 - peptide cross-linking [Evidence
                     IEA];
                     GO_process: GO:0018189 - pyrroloquinoline quinone
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline quinone biosynthesis protein
                     PqqE"
                     /protein_id="HSX69655.1"
                     /translation="QLGFSGGEPLVRQDLVELIAAARDMGYYTNLITSGIGLTEAKVA
                     AFAEAGLDHIQISFQAADEELNNLLAGSGKAYAQKVAMARAVKAHGYPMVLNFVTHRH
                     NIDRIDRIIELCLELEADFVELATCQFYGWAQLNRAGLLPSKAQLERAERITNEYRAR
                     LAAQNHPCKLIFVTPDYYEERPKACMNGWGNLFLDVTPDGTALPCHSARQLPVKFPNV
                     REHDIRHIWYDSFGFNRFRGDDWMPEPCRSCDEKERDFGGCRCQAFMLTGTAENADPV
                     CAKSAHHDLILDARREAELGAVGLGELTFRNDKASRLICKA"
     gene            1057..2859
                     /locus_tag="VLF16_01890"
     CDS             1057..2859
                     /locus_tag="VLF16_01890"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003243392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HSX69656.1"
                     /translation="MPNPDALWSAAQAAAAGRDFAELHAAHGGVLWVEFEPASGRCSL
                     QLLRDDQRRELTPPGYSVRSRVYEYGGGASCATERGAAFVNDADQQIHLIDDVAARAA
                     PRRLTERTDCRYGDLVYAPAWRALLAVEECREGEAVVHRLVRIDLAGRREVLAEGADF
                     YAAPVASVDGRRLAWIEWSRPQQPWTATRLCLRETDSSCRVLAGAADDQALQQPRFDA
                     RGRLWVLSDRDGWWQPMCIDDADALYGAPRDHAAAPWQLGGRTYLPLDGELLLTRFEL
                     GFGVLAAVREAAGERRLAEGFTRFRALAADAGHYYCIASAPDRLSAVLAIGRTDGAVS
                     VLAGGERLLNEAHLPRPQPLDCPVGEGERCHGFFYAPHAGAERPPLVVFLHGGPTSAC
                     YPVFDPRIPFWTLRGFAVLDLNYRGSSGFGRAYRQRLQGEWGRIELEDIRAAVAHLAQ
                     AGRIDPARVFVRGASAGGYSALLALAQDGYAGGASLYGVSDPLALRRLTHKFEADYLD
                     WLLGDPQQHAERYRQRTPLQQAGRIRVPVIFFQGGRDAVVVPQQTESMVAALRDNGIA
                     VEYRLFPDEGHGFRLAAHQAEALEAEHAFYRDLS"
     gene            3129..4292
                     /gene="ercA"
                     /locus_tag="VLF16_01895"
     CDS             3129..4292
                     /gene="ercA"
                     /locus_tag="VLF16_01895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase-like regulatory protein
                     ErcA"
                     /protein_id="HSX69657.1"
                     /translation="MSQVLSPLRKFVSPEIIFGAGCRHNVGNVAANFGASKVLLVSDP
                     GVQAAGWVADVEASLQAQGLAWSLYTEVSPNPRMEEVMTGAERYRSEGCNVIVAVGGG
                     SPMDCAKAIGIVAAHGRHILEFEGVDTVRVPSPPLILIPTTAGTSADVSQFVIISNQT
                     ERMKFSIVSKAVVPDVSLIDPETTLSMDPFLSACTGIDALVHAIEAFVSTGHGPLTDS
                     HALEAMRLIGGNLVEMIANPADIALREKIMLGSMQAGLAFSNAILGAVHAMSHSLGGF
                     LDLPHGLCNAALVEHVVAFNYDAAPERFRVIAETLGLDCRGLTHPQVRARLVEHLIAF
                     KSAVGFHETLARHGVGSSDIPFLSRHAMHDPCILTNPRQSSQRDVEVVYGEAL"
     gene            4276..>5122
                     /locus_tag="VLF16_01900"
     CDS             4276..>5122
                     /locus_tag="VLF16_01900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014591379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HSX69658.1"
                     /translation="MARPSEDPQQALAGLLGLGSQSQRKSHYPELQARLEELEAERNR
                     YKWLFENAVHGIFQASLTQGLLAANPALARMLGYAAPQEVLWSLSDLARELFVGGGDE
                     LLTIREALQARGGLYGYETQLRRRDGRHITVVMNLLLKPDEPGLFEGFVADITERKLA
                     QLRLQQLNDELEQRVAARTEELREARDAAQEANRSKDRFLAAASHDLLQPLNAARLLI
                     ATLGERSLPSAEAQLVERTQQALDGAEELLADLLDVSRLEQRAVQADPADHRLAELFA
                     PLASEF"
BASE COUNT          766 a         1841 c         1760 g          755 t
ORIGIN      
        1 cagctgggct tctccggcgg cgagccgctg gtgcgccagg acctggtcga gctgatcgcc
       61 gcggcccgcg acatgggcta ctacaccaac ctgatcacct ccggcatcgg cctcaccgag
      121 gccaaggtgg cggccttcgc cgaggccggc ctggaccata tccagatcag cttccaggct
      181 gccgacgagg agctcaacaa cctgctcgcc ggcagcggca aggcctacgc gcagaaggtc
      241 gccatggccc gcgcggtgaa ggcccacggc tacccgatgg tgctcaactt cgtcacccac
      301 cggcacaata tcgaccgcat cgaccgcatc atcgagctgt gcctggagct ggaggcggac
      361 ttcgtcgaac tcgccacctg ccagttctac ggctgggccc agctcaaccg cgccggcctg
      421 ctgccgagca aggcgcagct ggagcgcgcc gagcgcatca ccaacgaata ccgggccagg
      481 ctcgcggcgc agaaccaccc gtgcaagctg atcttcgtca ccccggacta ttacgaggag
      541 cgccccaagg cctgcatgaa cggctggggc aacctgttcc tcgatgtcac gcccgacggc
      601 accgcgctgc cgtgccacag cgcgcggcag ctgccggtga agtttcccaa cgtgcgcgaa
      661 cacgacatcc gccacatctg gtacgactcc ttcggcttca accgcttccg tggcgacgac
      721 tggatgcccg agccgtgccg cagctgcgac gagaaggagc gcgacttcgg cggctgccgc
      781 tgccaggcgt tcatgctcac cggcacggcg gagaacgccg atccggtctg cgccaagtcg
      841 gcccatcacg acctgatcct cgacgcccgc cgcgaggccg aactgggcgc ggtcggcctc
      901 ggcgagctga cgttccgcaa cgacaaggcg tcgaggttga tctgcaaggc atgacggtta
      961 ccggcgcctc gccccgtgta gggtgcgccg tgcgcaccga tggtccgtcg tgccgcgcga
     1021 cgccccgctt cgcacagccc acccacggag ccgcaaatgc ccaaccctga cgccctctgg
     1081 tccgccgccc aggccgcggc ggccggccgc gacttcgccg aactgcacgc ggcccatggc
     1141 ggcgtgctgt gggtcgagtt cgaaccggcc agcgggcgct gctcgctgca gttactgcgc
     1201 gacgaccagc gccgcgaact gaccccgccc ggctactcgg tgcgcagccg ggtctatgaa
     1261 tacggcggcg gcgccagctg cgcgaccgag cgcggcgcgg ccttcgtcaa cgacgccgac
     1321 cagcagatcc acctgatcga cgatgtcgcg gcacgcgccg cgccgcgccg gctgaccgag
     1381 cgtaccgact gtcgctatgg cgacttggtc tacgcgccgg cctggcgggc gttgctggcg
     1441 gtggaggagt gccgcgaggg cgaggcggtg gtgcatcggc tggtgcgcat cgacctggcg
     1501 ggccggcgcg aggtgctggc cgagggcgcg gatttctacg cggcgccggt ggccagtgtc
     1561 gatggccggc gcctggcctg gatcgagtgg tcgcgcccgc agcaaccctg gaccgccacc
     1621 cgcctgtgcc tgcgcgaaac cgacagcagc tgccgcgtgc tggccggcgc ggcggacgac
     1681 caggcgctgc agcagccgcg tttcgacgca cgcggccggc tctgggtgct gagcgaccgt
     1741 gacggttggt ggcagcccat gtgcatagat gatgcggacg ccttatacgg cgccccccgc
     1801 gaccacgcgg cggcgccctg gcagctgggc gggcgcacct acctgccgct ggacggcgag
     1861 ctgctgctga cccgcttcga gctgggcttc ggcgtgctgg ccgcggtgcg tgaggctgcc
     1921 ggcgagcggc ggctggccga aggcttcacc cgcttccgcg ccctggccgc cgacgccggg
     1981 cactactact gcatcgcctc cgcgccggat cgcctgtctg cggtgctggc aatcggccga
     2041 accgatggcg cggtgagcgt gctggccggc ggcgaacgcc tgctgaatga ggcccatctg
     2101 ccgcgcccgc agccgctgga ttgcccggtg ggcgagggcg agcgttgcca cggtttcttc
     2161 tacgcgccgc atgcgggcgc cgaacggccg ccgctggtgg tcttcctcca cggcgggccg
     2221 acctcggcct gctacccggt attcgacccg cgcatcccgt tctggaccct gcgcggcttt
     2281 gccgtgctcg acctcaacta ccgcggcagc tccggcttcg gccgcgccta tcggcagagg
     2341 ctgcagggcg agtgggggcg catcgagctg gaggacatcc gcgccgccgt ggcgcacctg
     2401 gcgcaggccg ggcgtatcga tccggccagg gtcttcgtgc ggggcgccag cgccggcggc
     2461 tacagcgcgc tgctggcgct ggcccaggac ggttatgccg gcggcgcgag cctgtacggc
     2521 gtgagcgacc ctctggcgct gcgccggctc acccacaagt tcgaggcgga ctatctggac
     2581 tggctgctcg gcgaccccca gcagcatgcc gagcgctatc gccagcgcac gccgctgcag
     2641 caggccggac gcatccgtgt gccggtgatc ttcttccagg gcggccgcga cgcggtggtg
     2701 gtgccgcagc agaccgagag catggtcgcc gccctccgcg acaacggcat cgccgtcgaa
     2761 tatcgcctgt ttcccgacga aggccacggc ttccgcctcg ccgcccacca ggccgaggcg
     2821 ctagaggcgg agcacgcgtt ctaccgcgac ctctcgtagg gtgcgccgcg caccggcggt
     2881 gcgttgatcg gtgcgcacgg cgcaccctac gcggacagaa gcgcgtcccc aggcgaggag
     2941 taccatggcc atgcccccgg cgaggccagc cgccgggtcc gtcgtgccag gcatgtaggg
     3001 tgcgccccgc gcaccggctt gcatgtcacc gcgcgtcacc ggcgtgcacg gcagaaggtc
     3061 cgattgcaaa gcccggcgat tgcagtaggc tgcgggaaga tcactaaaac aagaaaaaag
     3121 gctgtggtat gagccaggtg ttgagtccgc tgcgcaagtt cgtttctccc gaaatcatct
     3181 tcggtgccgg ttgccggcac aacgtcggca acgtcgccgc caacttcggc gccagcaagg
     3241 tgttgctggt gtccgacccg ggtgtgcagg ccgccggctg ggtcgccgat gtggaggcca
     3301 gcctgcaggc ccagggcctg gcctggagcc tgtacaccga ggtgtcgccg aacccgcgca
     3361 tggaggaggt gatgaccggc gccgagcgct accgcagcga gggctgtaac gtcatcgtcg
     3421 cggtcggcgg cggcagcccg atggactgcg ccaaggccat cggcatcgtc gccgcccatg
     3481 gtcgccacat cctcgagttc gagggcgtcg acacggtgcg ggtgccgagc ccgccgctga
     3541 tcctgattcc gaccaccgcc ggcacctccg ccgatgtttc gcagttcgtg atcatctcca
     3601 accagaccga gcggatgaag ttctccattg tcagcaaggc cgtggtgccg gacgtgtcgc
     3661 tgatcgaccc ggaaaccacc ctgagcatgg acccgttcct ctccgcctgt accggcatcg
     3721 acgcgctggt gcatgccatc gaggcgttcg tttccaccgg ccacgggccg ctgaccgaca
     3781 gtcacgcgct ggaggccatg cggctgattg gcggcaacct ggtggagatg atcgccaatc
     3841 ccgcggacat cgccctgcgc gagaagatca tgctcggcag catgcaggcc ggcctggcct
     3901 tctccaacgc catcctcggc gcggtgcacg cgatgagcca cagcctcggc ggcttcctcg
     3961 acctgcccca cgggctgtgc aacgcggcgc tggtggagca cgtggtggcc ttcaactacg
     4021 acgccgcgcc ggagcgcttc cgggtgatcg ccgagaccct cggcctggac tgccgaggcc
     4081 tgactcaccc gcaggtccgt gcgcgtctgg tggagcacct gatcgccttc aagagcgcgg
     4141 tcggtttcca cgagaccctg gcgcgtcacg gcgtcggcag cagcgacatt ccgtttctct
     4201 cgcgccatgc catgcacgac ccgtgcatcc tcaccaaccc gcgccagtcc agccagcgcg
     4261 acgtcgaggt ggtgtatggc gaggccctct gaagaccccc agcaggccct cgccggcctg
     4321 ctcgggctgg gcagccagtc gcagcgcaag agccactacc cggaactgca ggcgcgcctg
     4381 gaggagctgg aggccgagcg caaccgctac aagtggctgt tcgagaacgc cgtgcacggc
     4441 atcttccagg ccagcctgac ccaggggctg ctggccgcca acccggcgct ggcgcgcatg
     4501 ctcggctacg ccgcgccgca ggaagtgctg tggtcgctgt cggacctggc ccgtgagctg
     4561 ttcgtcggcg gtggcgacga gctgctgacc atccgcgagg cgctgcaggc gcgcggcggc
     4621 ctgtacggct acgagacgca actgcgccgc cgcgatggcc gccacatcac ggtggtcatg
     4681 aacctgttgc tcaagcccga cgaacccggg ttgttcgagg gcttcgtcgc cgatatcacc
     4741 gaacgcaagc tggcgcagct gcgcctgcag cagctcaacg acgagctgga gcagcgcgtc
     4801 gccgcgcgta ccgaggagct gcgcgaggca cgcgacgccg cgcaggaggc caaccgctcc
     4861 aaggaccgtt tcctggccgc cgccagccac gacctgctgc agccgctgaa cgccgcgcgg
     4921 ctgctgatcg ccaccctggg cgagcgcagc ctgccgagcg ccgaggcgca gctggtggag
     4981 cgcacccagc aggcgctcga cggcgccgag gagctgctcg ccgacctgct cgatgtatcc
     5041 cgcttggagc agagagcggt gcaggccgac ccggcggatc atcgcctggc cgagctgttc
     5101 gcgccgctcg cctcggagtt tc
//
LOCUS       DATIHC010000115         2979 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30644, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000115 DATIHC010000000
VERSION     DATIHC010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2979
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30644"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..93)
                     /gene="iscA"
                     /locus_tag="VLF16_01905"
     CDS             complement(<1..93)
                     /gene="iscA"
                     /locus_tag="VLF16_01905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252501.1"
                     /note="forms iron-sulfur clusters of ferredoxin [2FE-2S];
                     binds iron in the presence of the thioredoxin reductase
                     system; forms homodimers and tetramers; similar to SufA
                     protein; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HSX69659.1"
                     /translation="MAITMTEAAARHVQRSLEGRGKGEGIRLGVR"
     gene            complement(110..496)
                     /gene="iscU"
                     /locus_tag="VLF16_01910"
     CDS             complement(110..496)
                     /gene="iscU"
                     /locus_tag="VLF16_01910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HSX69660.1"
                     /translation="MAYSEKVIDHYENPRNVGKMNAEDPDVGTGMVGAPACGDVMRLQ
                     IKVNEQGVIEDAKFKTYGCGSAIASSSLATEWMKGKTLDEAESIKNTQLAEELALPPV
                     KIHCSVLAEDAIKAAVRDYKQKKGLL"
     gene            complement(545..1759)
                     /locus_tag="VLF16_01915"
     CDS             complement(545..1759)
                     /locus_tag="VLF16_01915"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IscS subfamily cysteine desulfurase"
                     /protein_id="HSX69661.1"
                     /translation="MRLPIYLDYSATTPVDPRVAQKMSECLLVDGNFGNPASRSHVFG
                     WKAEEAVENARRQVAELVNADPREIVWTSGATESDNLAIKGVAHFYGTKGKHIITSKI
                     EHKAVLDTTRQLEREGFEVTYIEPGEDGLVTPAMVEAALREDTILVSIMHVNNEIGTI
                     NDIAAIGELTRSRGVLFHVDAAQSTGKVAIDLEKMKVDLMSFSAHKTYGPKGVGALYV
                     RRKPRVRLEAQTHGGGHERGMRSGTLATHQCVGMGEAFRIAKEEMAQENQRVLALRDR
                     FYKQLEGMEELYVNGSLTQRVPHNLNLSFNYVEGESLIMALKDLAVSSGSACTSASLE
                     PSYVLRALGRNDELAHSSIRFTFGRFTTEEEIDYAASKVADAVNKLRELSPLWDMFKE
                     GVDISKVEWQAH"
     gene            complement(1792..2283)
                     /gene="iscR"
                     /locus_tag="VLF16_01920"
     CDS             complement(1792..2283)
                     /gene="iscR"
                     /locus_tag="VLF16_01920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003690 - double-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcriptional regulator
                     IscR"
                     /protein_id="HSX69662.1"
                     /translation="MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQ
                     LFAKLRRGNLVSSVRGPGGGYQLSRDMRVIQVAQVIDAVNESVDATRCQGMGDCHSGD
                     TCLTHHLWCDLSQQIHEFLSGISLADLVTRREVQEVAQRQDQRRCNGRTPQLDKIEAS
                     AIE"
     gene            complement(2416..>2979)
                     /gene="epsC"
                     /locus_tag="VLF16_01925"
     CDS             complement(2416..>2979)
                     /gene="epsC"
                     /locus_tag="VLF16_01925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009001 - serine O-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase EpsC"
                     /protein_id="HSX69663.1"
                     /translation="KIGRRFFIDHGMGIVIGETAEIGDDVTLYQGVTLGGTSWNKGKR
                     HPTLGDGVVVGAGAKVLGPFTVGAGAKVGSNAVVTKEVPPGATVVGIPGRIIVKNDDE
                     AEAKRQAMAEKLGFDAYGVGPDMPDPVARAIGQLLDHLQAVDGRLEGMCSALKELGSD
                     YCAKDLPQLRDEDFAGVCKERDDKPAA"
BASE COUNT          501 a          965 c          923 g          590 t
ORIGIN      
        1 gcgcacgccc aggcggatgc cctcgccctt gccgcgcccc tcgagggaac gctgcacatg
       61 gcgggcggcg gcttcggtca tggtgatggc cataacgact cctcgaaaat cagagcagac
      121 ctttcttctg cttgtaatcg cgcacggcgg ccttgatggc gtcctcggcg agcacggagc
      181 agtggatctt caccggcggc agcgccagtt cttcggccag ctgggtgttc ttgatcgact
      241 cggcttcgtc cagggtcttg cccttcatcc actcggtggc gagggagctg gaggcgatgg
      301 ccgagccaca accgtaggtc ttgaacttgg cgtcttcgat aacgccctgc tcgttgacct
      361 tgatctgcag gcgcatcacg tcaccgcagg ccggcgcacc gaccatgccg gtaccgacgt
      421 ccggatcttc ggcgttcatc ttgccaacgt tgcgcgggtt ctcgtagtgg tcaatgacct
      481 tttcactgta tgccatgctg caaatcctct ctcatcaggt gccgctctac aggcgactcg
      541 aaaatcagtg tgcctgccat tcgaccttgg agatgtcgac accttctttg aacatgtccc
      601 acagcggcga cagctcacgc agcttgttca ccgcatcggc caccttgctg gcggcgtagt
      661 cgatctcttc ttcggtggtg aagcggccga aggtgaagcg gatcgagctg tgcgccagct
      721 cgtcgttgcg gcccagggcg cgcagtacgt aggaaggctc gagcgaggcg gaggtgcagg
      781 cggagccgga agagaccgcc agatccttga gcgccatgat cagcgactcg ccttcgacgt
      841 agttgaagct gaggttcagg ttgtgcggca cgcgctgggt caggctgccg ttgacgtaca
      901 gttcttccat gccctcgagc tgcttgtaga agcgatcacg cagcgccagc acacgctggt
      961 tctcctgcgc catctcttcc ttggcgatgc ggaaggcctc gcccatgccg acgcactggt
     1021 gcgtggccag ggtaccggaa cgcatgccgc gctcgtggcc gccgccatgg gtctgggctt
     1081 ccaaccgcac gcgcggcttg cggcgcacgt agagggcacc gacgcctttc gggccgtagg
     1141 tcttgtgggc ggagaaagac attaggtcga ccttcatctt ctccagatcg atggccacct
     1201 tgccggtgga ctgcgccgca tcgacatgga acagcacgcc gcgggagcgg gtcagctcgc
     1261 cgatggcagc gatgtcgttg atggtgccga tctcgttgtt gacgtgcatg atcgacacca
     1321 gaatggtgtc ctcgcgcagc gccgcctcga ccatggccgg ggtgaccagg ccatcttcgc
     1381 ccggctcgat gtaggtgact tcgaagccct cgcgctccag ctggcgggtg gtgtccagca
     1441 ccgccttgtg ctcgatcttc gaggtgatga tgtgcttgcc cttggtgccg tagaaatgcg
     1501 cgacaccctt gatggccagg ttgtcggact cggtggcgcc ggaggtccag acgatctcgc
     1561 gcgggtcggc attgaccagc tcggccacct gacgacgggc attctccacc gcttcctcgg
     1621 ccttccagcc gaacacgtgg gagcgcgaag ccgggttgcc aaagttgcca tccaccagca
     1681 ggcactcgct catcttctgc gccacgcgcg ggtcgaccgg tgtggtggcg gaatagtcga
     1741 ggtaaatcgg caatctcatc aggtatctcc tgttacaggc aggcgccatg ctcactcgat
     1801 ggcggacgct tcgatcttgt ccagctgcgg cgtcctgcca ttacagcgac gctgatcctg
     1861 gcgctgggcg acttcctgca cttcgcgccg ggtcaccaga tcagccaggc tgatgccgct
     1921 gaggaattcg tgaatctgct gactgaggtc gcaccacagg tggtgggtca ggcaggtgtc
     1981 accggaatgg cagtcaccca tgccctggca gcgcgtcgca tcgaccgatt cgttgaccgc
     2041 gtcgatcacc tgcgccacct gtatcacccg catgtcgcgc gacagctgat aaccgccgcc
     2101 cggcccgcgc acgctgctga ccagattgcc gcggcgcagc ttggcgaaca gctgctcgag
     2161 atacgacagg gaaatgccct gacgctcgga aatgtccgcc agcgataccg ggccgttctg
     2221 ggcatgcagc gccagatcga gcatcgcagt gacggcatag cggcctttgg tggtcagacg
     2281 catggctttc gcccacggtt gttcggaatg gcgccagtat ctccttttcc gactatttag
     2341 gtcaactata agaccgatta aaacagtcgg atataagcgc agcgcggggc gcgaatgata
     2401 gcagactatc cgtcttcagg cagccggctt gtcgtcccgc tccttgcaca caccggcgaa
     2461 gtcttcgtcg cgcagctgcg gcaggtcctt ggcgcagtag tcgctgccca actccttcaa
     2521 cgccgagcac atgccctcga gacgaccatc cacggcctgg agatgatcca gcagctggcc
     2581 gatggcgcgc gcgaccggat cgggcatgtc cgggcccacg ccataggcgt cgaaccccag
     2641 cttctccgcc atggcctggc gcttggcctc cgcctcgtca tcattcttga cgatgatccg
     2701 ccctggaata ccgaccacgg tcgcgccggg cggcacctcc ttggtcacga ccgcgttgga
     2761 gccgaccttg gcgccggcgc ccacggtgaa ggggccgagc accttggcac ccgctccgac
     2821 cacgacgccg tcacccagcg tcgggtggcg cttgcctttg ttccaacttg tgccccccag
     2881 agtcacgccc tggtagaggg taacgtcgtc gccgatctcg gccgtttcgc cgatgacgat
     2941 gcccatgcca tggtcgatga aaaagcgccg gccgatctt
//
LOCUS       DATIHC010000116         1584 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7257, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000116 DATIHC010000000
VERSION     DATIHC010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1584
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7257"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..897
                     /gene="hemB"
                     /locus_tag="VLF16_01930"
     CDS             <1..897
                     /gene="hemB"
                     /locus_tag="VLF16_01930"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HSX69664.1"
                     /translation="LPVFVLDGDNRREAIPSMPGVERLSIDLLLQAAEHWVALGIPAL
                     ALFPVTPLEKKSLDGAEAWNPDGIAQRAIRALRAKFPELGVISDVALDPFTTHGQDGI
                     LDDDGYVMNDVTIDALVKQALSHAEAGAQVVAPSDMMDGRIQAIREALELADHHNVRI
                     MAYSAKYASAYYGPFRDAVGSAANLGKGSKNTYQMDPANGDEALHEVASDLAEGADMV
                     MVKPGMPYLDIVWRVKDAYRVPTFAYQVSGEYAMHMAAIQNGWLSEAVILESLTAFKR
                     AGADGILTYFAVRAAELLKAGR"
     gene            920..>1584
                     /locus_tag="VLF16_01935"
     CDS             920..>1584
                     /locus_tag="VLF16_01935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014340795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HSX69665.1"
                     /translation="MNTEGLSNKQIVEAALEVEPLPADPVAEAAPVVEPEPAPAPAPV
                     IPGLDDASLYIHRELSQLQFNIRVLEQALDESYPLLERLKFLLIFSSNLDEFFEIRVA
                     GLKKQINFAREQAGADGLLPSQVLARISEIAHEQVDRQYAVLNDVLLPELAKHQVNFI
                     RRRHWTTKIKTWVRRYFRDEIAPIITPIGLDPTHPFPLLVNKSLNFIVELEGVDAFGR
                     DSGL"
BASE COUNT          278 a          556 c          511 g          239 t
ORIGIN      
        1 ctgccggtgt tcgtcctcga cggcgacaac cgccgcgagg cgatcccgtc gatgccgggc
       61 gtcgagcgcc tgtccatcga cctgctgctg caggccgccg agcactgggt ggcgctgggc
      121 atcccggcgc tggcgctgtt cccggtgacg ccgctggaga agaagtcgct cgacggcgcc
      181 gaggcctgga acccggacgg cattgcccag cgcgccatcc gcgccctgcg cgccaagttt
      241 ccggagctgg gggtgatcag cgacgtggct ctcgatccgt tcaccaccca cggccaggac
      301 ggcatcctcg acgacgatgg ctacgtgatg aatgacgtga ccatcgacgc gctggtcaag
      361 caggccctgt cccacgccga ggccggtgcc caggtggtgg cgccgtcgga catgatggac
      421 gggcgcatcc aggcgatccg cgaggcgctg gagctggccg accatcacaa cgtgcgcatc
      481 atggcctact cggccaagta cgccagcgcc tactacggcc cgttccgcga cgcggtcggc
      541 tcggccgcca acctcggcaa gggcagcaag aacacctacc agatggaccc ggccaacggt
      601 gacgaggcgc tgcacgaagt ggcgtccgat ctggccgaag gcgccgacat ggtcatggtc
      661 aagccgggca tgccgtatct ggacatcgtc tggcgggtga aggacgccta ccgggtgccg
      721 accttcgcct accaggtcag cggcgaatac gccatgcaca tggccgccat ccagaacggc
      781 tggttgagcg aggcggtgat cctagaatcg ctcaccgcct tcaaacgcgc gggtgccgat
      841 ggcatcctca catacttcgc cgtgcgtgcg gcagaactct tgaaagcggg gcgctgaagc
      901 cgccccaggg aagcaaggca tgaacaccga gggactcagc aacaagcaga tcgtcgaagc
      961 cgcgctcgag gtcgagccgc tgccggccga ccccgtggcc gaggccgcgc ccgtcgtcga
     1021 gcccgagccg gctcccgcgc cggcgccggt gatcccgggg ctggacgacg ccagcctgta
     1081 catccaccgc gagttgtcgc agctgcagtt caacatccgc gtgctggagc aggcgctgga
     1141 cgagtcctac ccgctgctcg agcggctcaa gttcctgctg atcttctcca gcaacctcga
     1201 cgagttcttc gagatccgcg tcgccggcct gaagaagcag atcaacttcg cccgcgagca
     1261 ggccggtgcc gacggcctgc tgccgagcca ggtgctggca cgcatctcgg agatcgccca
     1321 cgagcaggtc gaccgccagt acgcggtgct caacgatgtg ctgctaccgg agctggccaa
     1381 gcatcaggtc aacttcatcc gtcgtcgcca ctggaccacc aagatcaaga cctgggtgcg
     1441 ccgctacttc cgcgatgaga tcgcgccgat catcacgccg atcggcctcg acccgaccca
     1501 cccgttcccg ctgctggtga acaagagcct caacttcatc gtcgagctcg agggcgtcga
     1561 cgccttcggc cgcgactccg gcct
//
LOCUS       DATIHC010000117         2250 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35473, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000117 DATIHC010000000
VERSION     DATIHC010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2250
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35473"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..559
                     /gene="fliA"
                     /locus_tag="VLF16_01940"
     CDS             <1..559
                     /gene="fliA"
                     /locus_tag="VLF16_01940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003243225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HSX69666.1"
                     /translation="KYDGSKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVS
                     DAIRAIEARTGRDAKDQEVAAELQLSLEDYYGILGDTLGSRLFSFDDLVQDGEEGGLH
                     EDINSSHGGPLHGLEDERFQEALTDAIAHLPERERLVLSLYYDEELNLKEIGEVLGVS
                     ESRVSQLHSQCAARLRSRLSEWRAS"
     gene            645..1019
                     /locus_tag="VLF16_01945"
     CDS             645..1019
                     /locus_tag="VLF16_01945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HSX69667.1"
                     /translation="MKILIVDDFSTMRRIIKNLLRDLGFTNTAEADDGNTALPMLQSG
                     SFDFLVTDWNMPGMTGIDLLRAVRADERLKTLPVLMVTAEAKREQIIEAAQAGVNGYV
                     VKPFTAQVLKEKIEKIFERVNG"
     gene            1039..1827
                     /locus_tag="VLF16_01950"
     CDS             1039..1827
                     /locus_tag="VLF16_01950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020299273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase CheZ"
                     /protein_id="HSX69668.1"
                     /translation="MANDESSLGELESTLKAHASQLVESLEKGRFGEAVHLIHELSQA
                     RDQGLYQEVGKLTRELHNAIVNFQIDPRNPHAQEISQISDATERLSYVVQMTEKAANR
                     TMDLVEQSAPLVNDLGDEAKVLSEDWGKFMRREMGADAFRDLAKRIELFLARSERDSQ
                     KLSSQLNDILLAQDYQDLTGQVIKRVTQLVTEVESNLLKLVLMASHVDRFAGIQHDMD
                     ALRAEQEKQKEPSKGEGPQIHADKRDDIASSQDDVDDLLSSLGF"
     gene            1858..>2250
                     /locus_tag="VLF16_01955"
     CDS             1858..>2250
                     /locus_tag="VLF16_01955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hpt domain-containing protein"
                     /protein_id="HSX69669.1"
                     /translation="MSFDADEEILQDFLVEAGEILEQLSEQLVELESRPDDMDLLNAI
                     FRGFHTVKGGAGFLQLNELVECCHIAENVFDILRKGERRVTAELMDVVLQALDAVNEM
                     FGQVRERAEPTPASPELLAALARLAEPES"
BASE COUNT          478 a          676 c          714 g          382 t
ORIGIN      
        1 gaagtacgac ggcagcaagg gcgccagctt cgaaacctac gccggcatcc gcattcgcgg
       61 cgccatgctc gatgaggtgc gcaagggcga ctgggcgccg cgctcggttc accgcaacac
      121 ccgcatggtc agcgacgcca tccgcgccat cgaagcacgc accggcagag acgctaaaga
      181 tcaagaggtt gcggccgaac tccaattgag tctcgaggat tactacggca ttcttggcga
      241 cactttgggc agccgcctgt tcagcttcga cgacctggtg caggacggcg aggagggcgg
      301 gctgcacgag gacatcaaca gcagccacgg cggccctctg cacggcctgg aggacgagcg
      361 cttccaggag gcgctgaccg acgccatcgc ccatctaccg gagcgcgagc gtctggtcct
      421 gtcgctgtat tacgacgaag aactgaattt gaaggaaatc ggcgaggtac tgggggtcag
      481 cgaatcccgg gtcagccagt tgcacagcca gtgcgccgcg cgtctgcggt ccaggctgag
      541 cgagtggcga gccagctgac gggctggccg attttcatga ttgacggcgc ccccggactt
      601 ccgggggcgt ttaggactgt acggaggtcg acttggacaa aaacatgaaa atcctcatcg
      661 ttgacgattt ctcgacgatg cgacggatca tcaagaacct cctgcgtgat ctggggttca
      721 ccaacaccgc ggaggccgac gatggcaata ccgcgttgcc gatgctgcag agcggcagct
      781 tcgactttct ggtgaccgac tggaacatgc ccggcatgac cggtatcgac ctgctgcgcg
      841 ccgtgcgtgc cgacgagcgc ctgaagacgc tgccggtgct gatggtgacc gccgaggcca
      901 agcgcgagca gatcatcgaa gccgcccagg ccggtgttaa cggctatgtg gtcaagccgt
      961 tcaccgctca ggtgctgaaa gagaagatcg agaagatttt cgaacgagtc aacggttgat
     1021 gtccgccgcg ggggcgctat ggcaaacgat gaatcctccc tgggcgaact tgaatcgacc
     1081 ctgaaggcac acgccagcca gctcgtcgag agcctggaga aaggccgttt cggcgaggct
     1141 gtgcatctga tccacgaact gagtcaggcc cgcgatcagg ggctgtacca ggaagttggc
     1201 aagctcacgc gtgagctgca caacgcgatc gtcaatttcc agattgatcc tcgcaatccg
     1261 catgcccagg aaatctcgca gatttccgat gccaccgagc gtctgtccta cgtggtgcag
     1321 atgaccgaga aggccgccaa ccgcacgatg gacctggtgg agcagagcgc tccgctggtc
     1381 aacgacctgg gcgacgaggc caaagtcctg tccgaggact ggggcaagtt catgcgccgg
     1441 gaaatgggcg ccgatgcctt ccgcgatctg gccaagcgta tcgagctgtt cctcgcccgc
     1501 agcgagcgcg acagccagaa gctgtccagc cagctcaacg acattctgct ggcgcaggac
     1561 taccaggacc tcaccgggca ggtgatcaag cgcgtgaccc aactggtcac cgaggtcgag
     1621 agcaacctgc tcaagctggt gctgatggcc agccatgtcg atcgtttcgc cggcatccag
     1681 cacgacatgg acgccctgcg cgccgagcag gaaaaacaaa aagagccttc caagggtgaa
     1741 ggtccgcaga ttcatgccga taagcgtgat gacatcgctt ccagccagga cgatgtcgat
     1801 gacctgctgt ccagccttgg attttaagag ctctaacaga gcctttggag cgcaacgatg
     1861 agcttcgacg ccgatgaaga aatcctccag gacttcctgg tagaggccgg cgaaattctt
     1921 gagcagctat ccgagcaact ggtcgagctg gaaagccgac cggatgacat ggacctgctc
     1981 aatgcgattt tccgcggttt ccacaccgtc aagggtggtg cgggcttcct ccagctgaac
     2041 gagctggtgg agtgctgcca catcgcggaa aacgtgttcg acatcctgcg caagggcgag
     2101 cgccgcgtca ccgccgaatt gatggacgtg gtcctgcagg cgctggacgc ggtcaacgaa
     2161 atgttcggcc aggtgcgcga gcgcgccgaa ccgactcccg cgtcccccga actgctggcc
     2221 gcgctggcgc gcctggccga gccggagagc
//
LOCUS       DATIHC010000118         3293 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5062, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000118 DATIHC010000000
VERSION     DATIHC010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3293
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5062"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..873
                     /locus_tag="VLF16_01960"
     CDS             <1..873
                     /locus_tag="VLF16_01960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013971623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1853 family protein"
                     /protein_id="HSX69670.1"
                     /translation="TLLSPALLDGRSLPLRHPLAASAWLSEPERLVDWLLRQEADPAA
                     LQEYLANGSSRLGRYYERLWQFALSAAPDVELLAANLPVRQGGLTLGELDLLLRDAEG
                     VHHLELAIKLYLGPERLPGDDVHHWLGPASEDRLGLKLEHFARHQLPLSASPATRLAL
                     AGLTDQTPRAAAWLGGYLFYPGNEGCAAPSDSNDHHLRGTWLHRRDWPRLAAERQHWQ
                     PLQRQAWLAPARLPAEECWSPAQLAAWLDRLDVFAPAQLLVRLEPGEDGDWHERERLF
                     LVNDAWPASAKATP"
     gene            complement(996..2105)
                     /locus_tag="VLF16_01965"
     CDS             complement(996..2105)
                     /locus_tag="VLF16_01965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HSX69671.1"
                     /translation="MTEPLNPDQLRSFTPLNVLSEQQWRELRGQLVPQHLLAGQLLFR
                     QGDHARTTYYLLSGELLLRDAEGNEERLQAGSEASCHPLSPTLPRLHEARALSDASVL
                     ALDSANLSRLLTWRLAYQDLLLDLGGSGEDVEWLERLLENPLFTKVPPANVRAMLDRL
                     RPIDLPAGSRVLVEGETGDCCYFLKSGRAEVFRGGASARQVLAELEVGACFGEEALLS
                     DQPRNATVTLIEPGVVLRLDRQDFFALLKAPVVDEVSFGEAARLLSTGAQWLDVRLQA
                     EYELGHAQQALNMPLHLLRLKVRLLDKDRTYLCYCDSGKRSASAVFLLSQLGFSAYAL
                     RDGLDALPAVQRGALLCENGPGYLARSGGRTERSH"
     gene            complement(2122..3075)
                     /locus_tag="VLF16_01970"
     CDS             complement(2122..3075)
                     /locus_tag="VLF16_01970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004350942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate deaminase"
                     /protein_id="HSX69672.1"
                     /translation="MPFTVPHWAPGAPLQPLSFDWLTRARVELAALRLDLLDPLLSGN
                     KWFKLKPHIEAAAAAGADGLISLGGAHSNHLHALAAAGRRFGFATAGLLRGEPQGTPT
                     VRDLQAFGMQLHWLGYGGYRKRHEADFWLPWRARYPRLLPVGEGGGGLPAARCCAGIV
                     ELARQQLAALGWDDYHGWWLAAGTGTTAAGLVLGERGARTVHVATAVPPGHGVEAALP
                     AILAEAGLADTGYRLRNASRGGFGRLDARLAGFILECEHASQLPLEPLYTGKALLALR
                     DEVEAGYFAPGTRLLFLHTGGLQGRRAMAQRLEALAAVRQE"
     gene            complement(3139..>3293)
                     /locus_tag="VLF16_01975"
     CDS             complement(3139..>3293)
                     /locus_tag="VLF16_01975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003244389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="chromosome partitioning protein ParA"
                     /protein_id="HSX69673.1"
                     /translation="YQQPTCEACLPSGERCAMPIDRVETPSRFVVGESNCCARHKAGA
                     RLRTVS"
BASE COUNT          523 a         1184 c         1125 g          461 t
ORIGIN      
        1 accctgctct cccccgccct gctcgacggc cggagtctgc cgctgcgcca tccgctggcc
       61 gccagcgcct ggctgagcga gccggagaga ctggtcgact ggctgttgcg ccaggaggcc
      121 gatcccgccg cgttgcagga atacctggcc aacggctcca gtcgcctggg tcgctactat
      181 gaacggctct ggcaattcgc cctctccgcc gcgccggacg tcgagctgct ggcggccaac
      241 ctgccggtgc gccagggcgg cctcaccctg ggcgagctgg acctgctgct gcgtgatgcc
      301 gaaggcgtgc atcacctgga actggcgatc aagctgtacc tgggcccgga acggctcccc
      361 ggcgacgatg tgcaccactg gctggggccg gccagcgagg atcgcctggg gctcaagctg
      421 gaacactttg cgcgtcatca gctaccgctg tccgccagtc cggccacgcg cctggcgctt
      481 gccgggctga ccgaccaaac accccgcgcc gccgcctggc tcggcggcta tctcttctac
      541 cccgggaatg aagggtgcgc ggcgccgagc gacagcaatg accaccatct gcgcgggacc
      601 tggctgcacc gccgcgactg gccccgtttg gccgccgaac gccagcactg gcaacccctg
      661 caacgccagg cctggctggc gccggcgcgg ctgcccgcgg aagaatgctg gtcgcccgcg
      721 caactcgccg cctggctgga tcggctggac gtgtttgccc cggcgcagct gctggttcgc
      781 ctcgagcctg gcgaggatgg cgactggcac gagcgcgagc ggctgttcct ggtcaacgac
      841 gcctggcccg catcagcaaa ggcgacgccg tagggtgcgc catgcgcacc gggatattcg
      901 gatgaccgcc ttcggggcac gcgcggcgca ccctagcggc cacacctcac agaagagaaa
      961 gcgcgcgctg caggcgattt ctgccgcgca ggaacctagt gactgcgctc ggtgcgccca
     1021 ccggaacggg ccaagtaacc cggcccgttc tcgcacagca gcgcgccgcg ctggaccgcc
     1081 ggcagcgcgt ccaatccgtc gcgcagtgca taggcggaaa agcccagctg cgacagcagg
     1141 aacaccgctg aggcgctgcg cttgccgctg tcgcaatagc acaggtaggt ccggtccttg
     1201 tccagcagac gcaccttcag gcgcagcagg tgcagcggca tgttcagcgc ctgctgggcg
     1261 tggcccagtt cgtattcggc ctgcaggcgc acgtccagcc actgggcgcc ggtcgagagc
     1321 aggcgcgccg cctcgccgaa cgacacctcg tccaccaccg gcgccttgag cagggcgaag
     1381 aagtcctggc gatccagacg cagcaccacg cccggttcga tcagggtgac ggtggcgttg
     1441 cgcggctggt cggagagcag cgcctcctcg ccgaagcagg cgcccacttc cagctccgcc
     1501 aatacctggc gtgcgctggc gccaccgcgg aacacctcgg cgcgaccgct cttgaggaag
     1561 tagcagcaat cgccggtctc gccctctacc agcacccggc tgccggcggg cagatcgatc
     1621 ggccgcagac ggtcgagcat ggcgcgcacg ttggccggcg gcaccttggt gaacagcgga
     1681 ttttccagca ggcgctccag ccactcgacg tcttcgccgc tgccgcccag atcgagcagc
     1741 aggtcctggt aggccaggcg ccaggtcagc aggcggctca ggttggccga atccagcgcc
     1801 agcacgctgg catcgctcag cgcgcgggct tcgtgcaggc gaggcaaggt cggggataga
     1861 ggatggcagc tggcctcgct gccggcctgc aggcgctctt cgttgccctc ggcgtcgcgc
     1921 aacagcagct cgccggacaa caggtaatag gtggtgcggg catggtcgcc ctggcggaac
     1981 agcagctgcc cggccagcag gtgctgcggc accagttggc cgcgcagctc acgccactgc
     2041 tgttcggaca gcacattgag cggggtgaag ctgcgcagct ggtcgggatt cagcggctcg
     2101 gtcatcgaca cctgtccttc gttattcttg gcgtactgct gccagcgctt ccaggcgttg
     2161 ggccatggcc cggcgcccct gcagtccccc ggtgtggaga aacagcagac gcgtacccgg
     2221 agcaaagtaa ccggcctcca cctcgtcgcg caatgccagc aatgccttgc cggtgtaaag
     2281 cggttcgagc ggcagttgcg aagcgtgctc gcactcgagg ataaaacccg ccaggcgcgc
     2341 atccaaccgg ccgaaaccgc cgcgactggc attccgcaga cgataccccg tatcagccaa
     2401 tccggcctcg gccaggatcg ccggcaacgc cgcttccact ccatgtccgg gcggcaccgc
     2461 ggtggcgaca tgcaccgtcc gtgcgccgcg ctcgcccagc accaggccgg cggcggtagt
     2521 gccggtgccg gcggccagcc accagccgtg atagtcgtcc cagcccagcg cggccagctg
     2581 ctgcctggcc agctcgacga tgcccgcaca gcaccgcgcc gccggcagcc cgccgccgcc
     2641 ctcgcccacc ggcaacagtc gcggataacg cgcgcgccag ggcagccaga aatccgcctc
     2701 gtggcgcttg cggtagccgc cgtagccgag ccagtgcagc tgcatgccga aagcctgcag
     2761 gtcgcgcacc gtcggcgtgc cctgcggctc gccgcgtagc aggccggcgg tggcgaagcc
     2821 gaaacgccgc cccgcggccg ccagggcgtg cagatgattg gagtgcgcac cacccaggct
     2881 gatcaggccg tcggcacccg ccgcggcggc cgcctcgatg tgcggcttca gcttgaacca
     2941 cttgttgccc gacagcagtg ggtcgagcag atcgaggcgc agcgcggcga gttcgacgcg
     3001 ggcgcgcgtc agccaatcga acgaaagtgg ttgcaggggc gcaccgggag cccagtgcgg
     3061 aacggtgaac ggcatggcga agcgggtccg gtcgcggcgc cacggcggcg ccggcgcatc
     3121 atacccggac cacggacctc aactgacggt gcgcaggcgc gcgccggcct tgtgccgggc
     3181 gcagcagttg gattcgccga ccacgaagcg gctgggcgtt tccacccggt cgatcggcat
     3241 ggcgcaacgc tcgccggacg gcaggcaggc ctcgcaggtg ggctgctggt aat
//
LOCUS       DATIHC010000119         5055 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35481, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000119 DATIHC010000000
VERSION     DATIHC010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5055)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5055)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5055
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35481"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2103
                     /locus_tag="VLF16_01980"
     CDS             <1..2103
                     /locus_tag="VLF16_01980"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008568079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HSX69674.1"
                     /translation="RHVMLPLVNRLIPIVADDYVDLEFGTGCVKITPAHDFNDYEVGK
                     RHNLPLINIFDKNAAVLAQAQVFNLDGSVNAELDATLPAEYAGLDRFVARKQIVAAFE
                     AAGLLEKIEDHALKVPKGDRSGTIIEPWLTDQWYVSTKPLAEKAIAVVESGEIQFVPK
                     QYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDELGNVYVGRDEMEVRSKHGLGNEVE
                     LVQDEDVLDTWFSSGLWTFSTLGWPQQTDFLKTFHPTDVLVTGFDIIFFWVARMIMLS
                     THLTGQIPFKTVYVHGLVRDGQGQKMSKSKGNVLDPLDIVDGITLDELLEKRTSGMMQ
                     PKLAEKIAKQTKAEFPEGIASYGTDALRFTFCSLATTGRDVKFDMGRVEGYRNFCNKL
                     WNATNFVLENTDGKDCGVNDEPVELSAVDRWIISALQRCEQDVTRHLDAFRFDLATQA
                     LYEFVWDEYCAWYLELVKPVLWDETASAERQRGTRRTLVRVLEVILRLAHPFMPFITE
                     EIWQRIKALAGKDGATLMLQPWPVANEARVDAGAEADIAWVKTFMLGVRQIRGEMKIS
                     MTKRIDVVLANANAEDLRRLAEFEPLLNKLAKFESIRVLAAGEEAPMSATTLVGELQV
                     LVPMAGLIDKDAELARLDKEIARLDGEVKRVGGKLANEGFVAKAPAEVLDKERAKLAE
                     AEQALAKLAEQREKIASL"
     gene            2156..2452
                     /locus_tag="VLF16_01985"
     CDS             2156..2452
                     /locus_tag="VLF16_01985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003249396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HSX69675.1"
                     /translation="MEVSKTRTSFYRRLYVAWLIDSGAAASVPALMEATGMPRRTAQD
                     TLAALGELDIVCDFVQQDGARNNAGHYAIRDWGPIDRTWVAAHLAQIKALLGYP"
     gene            2629..3579
                     /locus_tag="VLF16_01990"
     CDS             2629..3579
                     /locus_tag="VLF16_01990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012702646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF523 and DUF1722 domain-containing protein"
                     /protein_id="HSX69676.1"
                     /translation="MHMDRLKLGISACLLGERVRFNGGHKHSSLCTEVLAEHFELVPV
                     CPEMAVGLGAPRPVIRLVGDASAPRAVMPEHGRDLTDVLQAQAARTADELADISGYVL
                     MQKSPSCGLHRVKLYRDNGHLAEAGGRGVFAAALQALRPELPMEEEGRLHDPVLRENF
                     LNRVFVYGRWQRLLAAGLTRQGLIDFHARHKYLLMATHPQQQKALGRLLGDLGRHDPE
                     ELGPRYFSQLMAALSRRATRGTHSNVLQHLSGYLKQHLDDAERAELQQLIEQYRTGVV
                     PLVVPLTLLRHHFNRHPHAYVASQDYLRPYPDDLSLRNAI"
     gene            3576..4511
                     /locus_tag="VLF16_01995"
     CDS             3576..4511
                     /locus_tag="VLF16_01995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016494679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HSX69677.1"
                     /translation="MSETPVDYPSALALGYLPIREVARSTGVNPVTLRAWERRYGLVV
                     PYRTAKGHRLYAPEQVQRIQQVLTWLNRGVAVGQVRDLLEQAAPVEAAPSGIWDELRQ
                     AMLQAVARQAERSLDEAFNRAQSLYPPRVLCAQLLLPLLAELDLRWRDLPFGAQLEQV
                     FFHSWLRSKLGARLHHDNRQHNGAPLLLVSQSGLYLEPGLWLSAWLINGAGCAAQVLD
                     WSVPTSELVQAVDYIGPRALVLYSSQALGAPLRHQLPRLVEACSVPLLLAGPAATIHH
                     DELQSLAGLHLAADPLLAEQCLRELGLLENEPCAS"
     gene            4499..>5055
                     /locus_tag="VLF16_02000"
     CDS             4499..>5055
                     /locus_tag="VLF16_02000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009617457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HSX69678.1"
                     /translation="MRQLIWLRSDLRVADNGALAAAMAAGPTLAVYLISPGQWREHDD
                     APCKVDFWLRNLAALQPRLADLNVPLLIRVADHWREAPRVLAELCREHDIAAVWANEE
                     YGVNEQARDHAVEQELRRQGVAFQQRLDQLFFAPGSVLTQSGSYFQVFSQFRKVCYQR
                     LHTALPARVPLPSRQAPLAIASDPIP"
BASE COUNT          838 a         1830 c         1647 g          740 t
ORIGIN      
        1 cgtcacgtca tgctgccgct ggtcaaccgc ctgatcccga tcgtcgccga cgactatgtc
       61 gacctcgagt tcggcaccgg ctgcgtgaag atcaccccgg cccacgactt caacgactac
      121 gaagtcggca agcgccacaa cctgccgctg atcaacatct tcgacaagaa cgccgcggtg
      181 ctggcccagg cccaggtgtt caacctggac ggcagcgtca acgccgagct ggacgccacc
      241 ctgccggccg agtacgccgg cctcgaccgc ttcgtcgccc gcaagcagat cgtcgccgcc
      301 ttcgaggccg ccggcctgct ggagaagatc gaagaccacg ccctgaaagt gccgaagggc
      361 gaccgctccg gcaccatcat cgagccgtgg ctgaccgacc agtggtacgt ctccaccaag
      421 ccgctggcag agaaggccat cgccgtggtc gagagcggcg agatccagtt cgtgcccaag
      481 cagtacgaga acatgtactt cagctggatg cgcgacatcc aggactggtg catcagccgc
      541 cagctgtggt ggggccaccg catccccgcc tggtacgacg agctgggcaa cgtctacgtc
      601 ggccgcgacg agatggaagt gcgcagcaag cacggcctgg gcaacgaggt cgagctggtg
      661 caggacgagg acgtgctgga cacctggttc agctccggcc tgtggacctt ctccaccctc
      721 ggctggccgc agcagaccga cttcctcaag accttccacc ccaccgacgt gctggtcacc
      781 ggcttcgaca tcatcttctt ctgggtcgcc cggatgatca tgctgtccac ccacctgacc
      841 gggcagatcc cgttcaagac cgtgtacgtc cacggcctgg tgcgcgacgg ccagggccag
      901 aagatgtcca agtccaaggg caacgtgctc gacccgctgg acatcgtcga cggcatcacc
      961 ttggacgagc tgctggagaa gcgcaccagc ggcatgatgc agcccaagct ggccgagaag
     1021 atcgccaagc agaccaaggc ggagttcccc gaaggcatcg ccagctacgg caccgacgcc
     1081 ctgcgcttca ccttctgctc gctggccacc accggccgcg acgtgaagtt cgacatgggc
     1141 cgagtcgagg gctaccgcaa cttctgcaac aagctgtgga acgctaccaa cttcgtgctg
     1201 gagaacaccg acggcaagga ctgtggggtc aacgacgagc cggtggagct gtccgccgtc
     1261 gaccgctgga tcatctccgc cctgcaacgc tgcgagcagg acgtgacccg ccacctcgac
     1321 gccttccgct tcgacctggc gacccaggcc ctctacgagt tcgtctggga cgagtactgc
     1381 gcctggtatc tggagctggt caagccggtg ctgtgggacg agactgcctc ggccgagcgc
     1441 cagcgcggca cccgccgcac cctggtgcgc gtgctggagg tgatcctgcg cctggcgcac
     1501 ccgttcatgc ccttcatcac cgaagagatc tggcagcgca tcaaggccct ggccggcaag
     1561 gacggcgcca ccctgatgct gcagccctgg ccggtggcca acgaggcgcg ggtggatgcc
     1621 ggcgccgagg ccgacatcgc ctgggtcaaa accttcatgc tcggcgtgcg gcagatccgc
     1681 ggcgagatga agatctccat gaccaagcgc atcgacgtgg tcctggccaa cgccaatgcc
     1741 gaggacctgc gtcgcctggc cgagttcgag ccgctgctga acaagctggc caagttcgag
     1801 tcgatccgcg tgctggccgc cggcgaagaa gcgccgatgt ccgccaccac cctggtcggc
     1861 gagctgcagg tgctggtgcc catggccggg ctaatcgaca aggacgccga actggcgcgc
     1921 ctggacaagg agatcgcccg cctggacggc gaggtcaagc gggttggcgg caagctggcc
     1981 aacgaaggct tcgtcgccaa ggccccggcc gaggtgctcg acaaggagcg cgccaagctg
     2041 gccgaggccg aacaggcgct ggccaagctg gccgagcagc gcgagaagat cgccagtctg
     2101 taaccccgag aggcccgcgt tcgcgggcct cttcgcatcc cggccaggag cgcccatgga
     2161 agtcagcaag acccgcacca gcttctaccg tcgcctctac gtggcctggc tgatcgacag
     2221 cggcgcggcc gccagcgtgc cggcgctgat ggaggccacc ggcatgccgc gccgcaccgc
     2281 ccaggacacc ctggccgccc tcggcgaact ggacatcgtc tgcgacttcg tccagcagga
     2341 cggcgcgcgc aacaacgccg gacactacgc gatccgcgac tggggcccca tcgaccgcac
     2401 ctgggtcgcg gcgcacctgg cgcagatcaa ggcgctgctc ggttatccct gagtcgcccg
     2461 cccgggccgc gccgctccct cctgacaaca cccttctctc gtgaagccgc cttctctcgg
     2521 ccacgccccc gcgttcgccc cgtaaaactt gtacaaaaca aatcacttgt acaagtaagc
     2581 gcccgcatgt ttacttgtac aataatttca atttgtacaa gtttggaggt gcacatggac
     2641 cgcctcaagc tgggaatcag cgcctgcctg ctcggcgagc gggtgcgttt caacggcgga
     2701 cacaagcact cgtcgctgtg caccgaggtg cttgccgaac atttcgagct ggtgccggtg
     2761 tgcccggaga tggccgtggg cctgggcgcg ccgcggccgg tcatccgcct ggtcggcgac
     2821 gccagcgcac cgcgggcggt gatgcccgag cacggccgcg acctgaccga cgtgctgcag
     2881 gcccaggccg cgcgcaccgc cgacgagctg gccgacatca gcggctatgt gctgatgcag
     2941 aagtcgccct cctgcgggct gcaccgggtc aagctgtacc gggacaacgg ccacctcgcc
     3001 gaggccggcg gccgcggcgt gttcgccgcc gcgctgcagg cgctgcgccc cgaattgccg
     3061 atggaagagg aaggccgcct gcacgacccg gtgctgcgcg agaacttcct caaccgggtg
     3121 ttcgtctacg gccgctggca gcgcctgctg gccgcgggcc tgacccgcca gggcctgatc
     3181 gacttccacg cgcgccacaa gtacctgctg atggccaccc atccgcagca gcagaaggcc
     3241 ctgggtcgcc tgctcggcga cctcggccgg cacgaccccg aggagctcgg cccgcgctac
     3301 ttcagccaac tgatggcggc gctgagccga cgcgccaccc gcggcaccca cagcaacgtg
     3361 ctgcagcacc tgagcggcta cctcaagcag cacctcgacg acgccgaacg cgcggaactg
     3421 caacagctga tcgagcagta ccgcaccggg gtcgtgccgc tggtggtgcc cctgacgctg
     3481 ctgcgccacc acttcaaccg tcacccgcat gcctacgtgg cgagccagga ctacctgcgt
     3541 ccgtacccgg acgatctcag tttgaggaac gcgatttgag cgagaccccc gtcgactacc
     3601 cgagcgccct ggcgctcggc tacctgccca tccgcgaagt ggcgcgcagc accggggtca
     3661 acccggtgac cctgcgcgcc tgggagcggc gctacggcct ggtggtgccc taccgcaccg
     3721 ccaagggcca ccgcctgtac gcgccggagc aggtgcagcg catccagcag gtgctgacct
     3781 ggctcaaccg cggcgtggcg gtcggccagg tgcgcgatct gctggagcag gccgcgcccg
     3841 tcgaagcggc gcccagcggc atctgggacg aactgcgcca ggccatgctc caggccgtgg
     3901 cgcgccaggc cgagcgcagc ctggacgagg ccttcaaccg cgcccagtcg ctctacccgc
     3961 cgcgggtgct ttgcgcgcag ttgctcctac cgctgctggc cgaactcgac ctgcgctggc
     4021 gcgacctgcc gttcggcgcc cagctggaac aggtgttctt ccactcctgg ctgcgcagca
     4081 agctgggcgc gcgcctgcat cacgacaacc gtcagcacaa cggcgcaccg ctgctgctgg
     4141 tcagccagtc cggcctgtac ctggagccgg gcctgtggct gagcgcctgg ctgatcaacg
     4201 gcgccggctg cgcggcgcag gtgctggact ggtcggtgcc gaccagcgag ctggtgcagg
     4261 cggtggacta catcggcccg cgcgcgctgg tgctgtattc cagccaggcc ctgggcgcgc
     4321 cgctgcgtca ccagctgccg cgcctggtcg aggcctgctc ggtgccgctg ctgctggccg
     4381 gcccggcggc caccatccac cacgacgagc tgcagagcct cgccggcctg cacctggccg
     4441 ccgacccgct gctcgccgag cagtgcctgc gcgagctggg cctgctggag aacgagccgt
     4501 gcgccagctg atctggctgc gcagcgacct gcgcgtggcc gacaacggcg cgctggccgc
     4561 cgccatggcg gccggcccga cgcttgccgt gtacctgatc agccccgggc agtggcgcga
     4621 gcacgacgat gcgccgtgca aggtcgactt ctggctgcgc aacctggccg cgctgcaacc
     4681 gcgcctggcc gacctcaacg tgccgctgct gatccgcgtt gccgaccact ggcgcgaggc
     4741 gccgcgggtg ctggccgagc tgtgccgcga gcacgacatc gccgcggtct gggccaacga
     4801 ggagtacggc gtcaacgagc aggcccgcga ccacgcggtg gaacaggaac tgcgccgcca
     4861 gggcgtcgcc ttccagcagc ggctggacca gctgttcttc gctcccggca gcgtgctgac
     4921 ccagtccggc agctacttcc aggtgttcag ccagttccgc aaggtctgct accagcgcct
     4981 gcacaccgcc ctaccggcgc gggtgccgtt gccgtcgcgg caggcgccgc tggccatcgc
     5041 cagcgacccg attcc
//
LOCUS       DATIHC010000120         2168 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5084, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000120 DATIHC010000000
VERSION     DATIHC010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2168
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5084"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1219
                     /locus_tag="VLF16_02005"
     CDS             <1..1219
                     /locus_tag="VLF16_02005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017710407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSX69679.1"
                     /translation="NETLEQRVADRTTELMQAEEKLRQSQKMEAVGQLTGGLAHDFNN
                     LLAGISGALDLTLLRIAQGRWQDIEKYIVTAQGAAKRAAAVTHRLLAFSRRQTLDPRP
                     TDVNLLIAGMAELIQRTVGPSIRVETSGASGLWPALVDASQLENALLNLCLNARDAMP
                     EGGSIQVRTANRRMDQEAARALDLREGEYLSLAVTDTGVGMTPETIAKAFDPFFTTKP
                     IGQGTGLGLSMIYGFAQQSGGQVRIRSELGKGSTVSLYLPRYHGDAARDEAEAGGGPA
                     ACAETGETILVVDDEPTVRMLLTEALGDLGYTLIEAADSLAGLKVLRSDVHIDLLITD
                     VGLPGGMNGRQMADAGREIRPGLKTLFITGYAEQEVFEPRHLGPGMEVLTKPFTIEAL
                     VARVRELVSSRGD"
     gene            complement(1309..>2168)
                     /locus_tag="VLF16_02010"
     CDS             complement(1309..>2168)
                     /locus_tag="VLF16_02010"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSX69680.1"
                     /translation="YSQARLSITDPLTLVLGARTSEFERRSRSVAPSQPSAWETGSRE
                     TGEFTPYGGLVYYLAPNITSYVSYSDIFMPQGQQTADGGSLEPRIGAQWEAGLKGQFF
                     DRNLNASLAIYRTRDTNRALQDLDNPGFSIAAGEVEVEGWELEVSGRPLPNLNLSVGY
                     AYVNSKYLEDRNNAGRNYSIFEPKHSLKSYAKYRFVDGPLARAFVGGGVHINSGNRGS
                     SETELRAQGGYALVNAQVGYEFSEKTSVALLGNNLFDRHYYARVGGQNTYNTFGEPRN
                     FALVLRTEL"
BASE COUNT          341 a          742 c          750 g          335 t
ORIGIN      
        1 caacgagacg ctagagcagc gtgtcgccga ccgcacgacc gaactgatgc aggccgagga
       61 aaagctgcgc cagtcgcaga agatggaggc cgtcggccag ctcaccggcg gcctggccca
      121 tgacttcaac aatctgctgg cgggcatctc gggcgccctc gacctgacgc tcctgcgcat
      181 cgcccagggg cgctggcagg acatcgagaa atacatcgtc accgcccagg gcgcggccaa
      241 gcgcgcggcg gcggtgaccc accggctcct ggccttctcc cgccggcaga cgctcgaccc
      301 gcggcccacc gacgtgaacc tgctgatcgc cggcatggcc gagctgatcc agcgcaccgt
      361 ggggccgagc atccgcgtcg agacctccgg cgcgagcggc ctgtggccgg cgctggtcga
      421 tgcgagccag ctggaaaacg cgctgctgaa tctctgcctc aacgcccgcg acgccatgcc
      481 cgagggtggc tccatccagg tcaggacggc gaaccggcgg atggaccagg aggccgcccg
      541 tgcgctcgac ctgcgcgagg gcgagtacct gtcgctggcg gtgaccgaca cgggcgtggg
      601 catgacgccg gagaccatcg ccaaggcctt cgacccgttc ttcacgacca agcccatcgg
      661 ccaaggcacc ggcctcgggc tgtcgatgat ctatggcttt gcccagcagt ccggcgggca
      721 ggtgcgcatc cgctccgaac tgggcaaggg ctccaccgtg agcctctacc tgccgcgcta
      781 tcacggcgat gcggcgcgcg acgaggcgga agccggcggc ggccccgccg cctgcgcgga
      841 gaccggcgag accatcctgg tggtcgacga cgagcccacg gtgcgcatgc tgctcaccga
      901 agcgctgggc gacctgggct acaccctgat cgaggcggcc gacagcctgg ccgggctcaa
      961 ggtgctgcgc tcggacgtgc acatcgacct gctgatcacc gatgtcggcc tgcccggcgg
     1021 catgaacggc cggcagatgg cggacgccgg ccgggaaatc cgtcccggcc tgaagaccct
     1081 gttcatcacc ggctatgccg aacaggaggt cttcgagccc cgccacctcg gcccggggat
     1141 ggaggtgctg accaagccct tcaccatcga ggcgctggtg gcgagggtgc gcgagctggt
     1201 atccagtcga ggcgactgaa cggcgagcgg acgttgtccc cggccacgcc gagcttgccg
     1261 gttcgaggtc cggcctccgc ccccccacct cgccccggcc gtcgcgcctc agagctcggt
     1321 gcgcagcacc aacgcgaagt ttcgcggctc gccaaaggtg ttgtaggtgt tctggccgcc
     1381 gacccgggcg tagtagtggc ggtcgaacag gttgttgccg agcagcgcaa ccgaagtctt
     1441 ttcgctgaac tcgtaaccca cctgggcgtt gaccagtgcg tagccgccct gtgcgcgcag
     1501 ctccgtttca ctgctgccgc ggttgccgct gttgatgtgc accccgccgc cgacgaaggc
     1561 gcgcgcgagc gggccgtcga cgaagcggta cttggcgtaa ctcttcagcg aatgcttggg
     1621 ttcgaagatc gagtagttgc ggcccgcgtt gttgcggtct tccaggtatt tgctgttgac
     1681 gtaggcatag cccacggaca ggttcaggtt gggcagcggc cggcccgaca cttccagctc
     1741 ccatccctcg acctccacct cgccggcggc gatcgagaag ccggggttgt ccaggtcctg
     1801 cagggcccgg ttggtatcgc gggtgcggta gatggccagc gaggcattca ggttgcggtc
     1861 gaagaactgc cccttcaggc cggcttccca ctgggcgcca atgcgcggct ccaggctgcc
     1921 gccgtccgcc gtctgctgcc cctgcggcat gaagatgtcg gagtagctga cgtagctggt
     1981 gatgttcggc gcgaggtagt agaccaggcc gccatagggc gtgaactcgc cggtctcgcg
     2041 ggagccggtt tcccaggcgc tgggctgcga aggcgccacg ctgcgcgagc gccgctcgaa
     2101 ctcgctggta cgggcgccca ggaccagggt caacgggtcg gtgatcgaca ggcgcgcctg
     2161 gctgtaga
//
LOCUS       DATIHC010000121         2835 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_16480, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000121 DATIHC010000000
VERSION     DATIHC010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2835
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16480"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..496)
                     /locus_tag="VLF16_02015"
     CDS             complement(<1..496)
                     /locus_tag="VLF16_02015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HSX69681.1"
                     /translation="MTDAVAVARPVTGLILSGGGARAAYQVGVLAAIADLLGESCRNP
                     FPVIVGTSAGAINAVGLACGALHFAGAVRRLTEVWQAFHCGDVYRSDWPGVMRQAGRF
                     FGHSLLGMGKDLPVALLDSSPLGRLLARELDFSGIAAAVRMRQLRAVAVTAFGYESGQ
                     AVTFY"
     gene            complement(573..1502)
                     /locus_tag="VLF16_02020"
     CDS             complement(573..1502)
                     /locus_tag="VLF16_02020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009407491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase"
                     /protein_id="HSX69682.1"
                     /translation="MDRPQFRAYFLHPRFWPLWLGLALLWLVVQLPYRVLLSLGRGLG
                     AVMCRVAGSRRAIAGRNLELCFPQLSAAERQKLLKENFASTGIAFFEMAMSWWWPRER
                     LARLAHIEGLEHLRQVQAEGQGAILMALHFTTLEIGAALLGQRQTIDGMYREHKNPLF
                     DYIQRRGRERHNPDATAIEREDIRAMLKVLRAGRAIWYAPDQDYGPKQSIFVPLFGIS
                     AATVTATTKFARLGKARVVPFTQERLADGSGYRLVIHPPLENFPGESEEADCLRINRW
                     IEESVSRHPEQYLWAHRRFKTRPEGEPRLYRKA"
     gene            1613..2344
                     /gene="minC"
                     /locus_tag="VLF16_02025"
     CDS             1613..2344
                     /gene="minC"
                     /locus_tag="VLF16_02025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004857 - enzyme inhibitor activity
                     [Evidence IEA];
                     GO_process: GO:0000918 - division septum site selection
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HSX69683.1"
                     /translation="MSQADLLDQDPVFQLKGSMLAITVLELAHNDLERLDRQLADKVA
                     QAPNFFQNTPLVLALDKLPEGEGELDLAKLMELCRQHGLRTLAIRANRDDDIAAADAL
                     DIPVLPPSGAREKLVEPVEARKKEEKPAEPQYRPTKIITSPVRGGQQIYAQGGDLVVM
                     APVSAGAELLADGNIHVYGPLRGRALAGVKGDARARIFCQQMGAEMLSVAGQYKTAEE
                     LRRDPLWGQSVQVGLSGDVLNITRL"
     gene            2446..>2835
                     /locus_tag="VLF16_02030"
     CDS             2446..>2835
                     /locus_tag="VLF16_02030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSX69684.1"
                     /translation="MAKILVVTSGKGGVGKTTTSAAIGTGLALRGHKTVIVDFDVGLR
                     NLDLIMGCERRVVYDFVNVINGEATLTQALIKDKRLENLYVLAASQTRDKDALTKEGV
                     GKVIDELSQNFEYVICDSPAGIETGAHM"
BASE COUNT          521 a          950 c          944 g          420 t
ORIGIN      
        1 gatagaaggt caccgcctgg ccactctcgt agccgaaggc cgtcaccgcc accgcacgca
       61 gctggcgcat gcgtaccgcc gcggcgatgc ccgagaagtc cagctcacgg gccagcaggc
      121 ggcccagcgg cgagctgtcg agcagcgcca ccggcaggtc cttgcccatg cccagcaggc
      181 tgtggccgaa gaagcggccg gcctggcgca tcacgccggg ccagtcgctg cgatacacgt
      241 caccgcaatg aaaggcctgc cagacctcgg tcagccggcg caccgccccg gcgaagtgca
      301 gcgcgccgca ggccaggcca acggcgttga tggcgccggc cgaggtgccg acgatgaccg
      361 gaaacggatt gcgacaggac tcgccgagca ggtcggcaat cgccgccagc acccccacct
      421 gataggccgc ccgcgcgccg ccgccggaga ggatcagccc ggtgacgggc ctggcaactg
      481 ctactgcatc ggtcatgggc gccttccgct ttttttcagc gagtataggg gccgtgcaga
      541 gggttgaaaa agcgccggcg cgtgcgccgg gctcaggcct tgcgatacag gcgcggctcg
      601 ccctcggggc gggtcttgaa gcgccggtgt gcccacaggt actgctcggg atgccggctc
      661 acggactcct cgatccagcg attgatgcgc aggcaatcgg cctcctcgct ctcgccgggg
      721 aagttttcca ggggcggatg gatcaccagg cgatagccgg agccgtcggc caggcgctcc
      781 tgggtgaacg gcaccacgcg tgccttgccc aggcgggcga acttggtggt ggcggtgacg
      841 gtggcggcgc tgatgccgaa caatggcacg aagatgctct gcttggggcc gtagtcctgg
      901 tccggcgcgt accagatggc gcggccggcg cgcagcacct tgagcatggc gcggatgtcc
      961 tcgcgctcga tggcggtggc gtccgggttg tggcgctcgc ggccgcggcg ctggatgtag
     1021 tcgaacagcg ggttcttgtg ctcgcggtac atgccgtcga tggtctgacg ctggccgagc
     1081 agcgcggcac cgatttccag ggtggtgaag tgcagcgcca tgaggatcgc gccctgccct
     1141 tcggcctgga cctggcgcag atgctccagc ccctcgatgt gcgccagcct ggccagacgt
     1201 tcccgcggcc accaccagct catggccatc tcgaagaagg cgatgccggt ggaggcgaag
     1261 ttttccttca gcagcttctg ccgctccgcg gccgatagct gcgggaagca cagctccaga
     1321 ttgcgcccgg cgatggcccg gcgcgaaccc gccacgcggc acatcaccgc acccaggccg
     1381 cggcccagcg agagcagaac gcgatacggc aactgcacca ccagccacag cagtgccagg
     1441 cccagccaca ggggccagaa gcgcggatga aggaagtaag cgcgaaattg cgggcggtcc
     1501 atggagattc cgggcaggcg acaaagccgg gcattttaca gaagtccgct cggcttgcgg
     1561 cgctgcgacc ttctcgttat aagtcgtgcc cattcaatgc agtgggcaga ccatgagcca
     1621 agccgatctc ctcgaccaag accccgtgtt ccagctcaag ggcagcatgc tcgccatcac
     1681 cgtgctggag ctggcgcaca acgacctgga gcgcctggac cggcaactgg ccgacaaagt
     1741 ggcgcaggcg cccaatttct tccagaacac cccgctggtg ctggcgctgg acaagctgcc
     1801 ggaaggcgaa ggcgagctcg acctggccaa gctgatggag ctctgccgcc agcacggcct
     1861 gcgcaccctc gccatccgcg ccaaccgcga tgacgacatc gccgccgccg atgccctcga
     1921 cataccggtg ctgccgccgt ccggcgcgcg ggagaaactg gtcgagccgg tggaggcgcg
     1981 caagaaggaa gagaaaccgg ccgaaccgca atacaggccg accaagatca tcaccagccc
     2041 ggtgcgcggc ggccagcaga tctacgccca gggcggcgac ctggtggtga tggcgccggt
     2101 cagtgccggt gcggaacttc tcgccgacgg caacatccat gtgtacggtc cgctgcgcgg
     2161 gcgcgccctg gccggcgtca agggcgatgc cagggcccgc attttctgcc agcagatggg
     2221 cgccgagatg ctctccgtgg ccggccaata caagaccgcg gaagagctgc gccgcgaccc
     2281 gttatggggc caatccgtac aggtcggcct gtcgggggac gtgttgaaca tcacccgcct
     2341 ttaacggata ctgcggccca atttcaggga ccaaaaaggg gcattcggaa gccagtttac
     2401 cggcgccgga tttcccgaat tttcatatat ttggggtaaa tcaccttggc caagatcctc
     2461 gtagtcactt ccggcaaggg cggcgtgggc aaaaccacca ccagcgccgc catcggcacc
     2521 ggcctcgccc tgcgcggcca taagaccgtg atcgtcgact tcgacgtcgg tctgcgtaac
     2581 ctggacctga tcatgggttg cgagcgccgc gtggtgtacg acttcgtcaa cgtcatcaac
     2641 ggcgaagcca ccctgaccca ggccctgatc aaggacaagc gcctcgagaa cctctacgtg
     2701 ctggccgcca gccagacccg tgacaaggac gcgctgacca aggaaggcgt gggcaaggtc
     2761 atcgacgagc tgtcgcagaa cttcgaatac gtgatctgcg actcccccgc cggcatcgag
     2821 accggcgcgc acatg
//
LOCUS       DATIHC010000122         1982 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2636, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000122 DATIHC010000000
VERSION     DATIHC010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1982)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1982)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1982
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2636"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            154..>1982
                     /locus_tag="VLF16_02035"
     CDS             154..>1982
                     /locus_tag="VLF16_02035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019362739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HSX69685.1"
                     /translation="MSLPKNHLELLSPARDVAIAREAILHGADAIYIGGPSFGARHNA
                     CNEVSDIAELVKFARRYHARVFTTLNTIFHDDELEQVRTLIHQLYDAGVDALIVQDMG
                     VMELDIPPIELHASTQTDIRTLDRAKFLDQAGFSQLVLARELNLQEIRAIADATDASI
                     EFFIHGALCVAFSGQCNISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVAFEKHLLS
                     MKDNNQSANLRALVEAGVRSFKIEGRYKDMGYVKNITAHYRKELDAILEDRPDLARAS
                     SGRTAHFFLPDPDKTFHRGSTDYFVTDRKVDIGAFDSPTFTGLAVGNVEKVNKRDLIA
                     VTHEPLSNGDGLNVLVKREVVGFRANIAELKNEFEEDGEKRYRYRVEPNEMPEGLFRL
                     RPNHPLSRNLDHNWQQALLKTSAERRIGVSWKAELREEQLKLTATSEEGIAVEAALPG
                     PFGVAQKPAQALDGLRDLLTQLGTTEYHALDVALDAPQAFFVPNSQLKALRREAIDKL
                     TEARVAAHPRGSRKAETTPPPVYPESHLSFLANVYNQKARDFYHRHGVQLIDAAYEAH
                     EEEGEVPVMITKHCLRFSFNLCPKQAKGVTGVRTKVAPMQLIQG"
BASE COUNT          382 a          733 c          586 g          281 t
ORIGIN      
        1 gccctggttg gagcggctac ggatgctgtg gccacgccgc ccggcgtagg cgcaaatcga
       61 cgggcgcgga ccgctaggca cctcggggtg ccaccctccc ctcgccccgc tacaatgcgc
      121 gccttgccgt gccacgccta aagaagaaac accatgtccc tgcccaaaaa ccatctggaa
      181 ctgctcagcc ctgcccgcga tgtggccatc gcccgggagg ccatcctgca tggggccgat
      241 gccatctata tcggcgggcc gagcttcggt gcgcggcaca atgcctgcaa cgaggtgagc
      301 gatatcgccg agctggtgaa gttcgcccgc cgctaccacg cgcgggtatt caccaccctc
      361 aacaccatct tccacgacga cgagctggag caggtgcgca cgctgatcca ccagctgtat
      421 gacgccggcg tcgatgcgct gatcgtgcag gacatgggcg tgatggagct ggatattccg
      481 ccgatcgagc tgcatgccag cacccagacc gatatccgca ccctggaccg ggccaagttc
      541 ctcgaccagg ccggcttttc ccagctggtc ctggcgcgcg agctgaacct gcaggaaatc
      601 cgcgccatcg ccgatgccac cgacgcctcc atcgagttct tcatccacgg tgcgctgtgc
      661 gtggccttct ccggccagtg caacatctcc cacgcgcaga ccgggcgcag cgccaaccgc
      721 ggcgactgct cgcaggcctg ccgcctgcca tacaccctga aggacgacca gggccgcgtg
      781 gtggccttcg agaagcacct gctgtcgatg aaggacaaca accagagcgc caacctgcgt
      841 gccctggtcg aggccggcgt gcgctcgttc aagatcgagg ggcgctacaa ggacatgggc
      901 tacgtgaaga acatcaccgc ccactaccgc aaggaactcg acgccatcct cgaagaccgc
      961 ccggacctgg cccgcgcctc cagcggccgc accgcgcact tcttcctgcc cgatccggac
     1021 aagaccttcc accgcggcag caccgactac ttcgtcaccg accgcaaggt cgacatcggt
     1081 gccttcgact cgccgacctt caccggcctg gccgtcggta acgtggaaaa ggtcaacaag
     1141 cgcgacctga tcgccgtcac ccacgagccg ctgtccaacg gcgacggcct caacgtgctg
     1201 gtcaagcgcg aggtggtggg cttccgcgcc aacatcgccg agctgaagaa cgaattcgag
     1261 gaagacggcg agaagcgcta ccgctaccgc gtcgagccca acgagatgcc agagggcctg
     1321 ttccgcctgc gccccaacca tccgctctcg cgcaacctcg accacaactg gcagcaggcg
     1381 ctgctcaaaa cctccgccga gcgccgcatc ggcgtcagct ggaaggccga actgcgcgaa
     1441 gaacagctca agctgaccgc caccagcgag gaaggcatcg ccgtggaggc cgccctgccc
     1501 ggcccgttcg gcgtggcgca aaagcctgcg caggcactcg acggcctgcg cgacctgctg
     1561 acccagctcg gcaccaccga ataccatgcc ctcgacgtgg cgctggatgc cccgcaggcg
     1621 ttcttcgtgc ccaactcgca gctcaaggcg ctgcgtcgcg aggccatcga caagctcacc
     1681 gaggcacgcg tcgccgctca cccgcgcggc agccgcaagg ccgagaccac cccgccgccg
     1741 gtgtacccgg agtctcacct gagcttcctg gccaacgtct acaaccagaa ggcccgcgac
     1801 ttctaccacc gccacggcgt gcagctgatc gacgcagcct acgaggccca cgaagaggaa
     1861 ggcgaagtgc cggtgatgat caccaagcac tgcctgcgct tctccttcaa cctgtgcccc
     1921 aagcaggcca agggcgtcac cggcgtgcgc accaaggtcg cgccgatgca gctgatccag
     1981 gg
//
LOCUS       DATIHC010000123         1715 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37547, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000123 DATIHC010000000
VERSION     DATIHC010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1715)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1715)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1715
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37547"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1715)
                     /gene="napA"
                     /locus_tag="VLF16_02040"
     CDS             complement(<1..>1715)
                     /gene="napA"
                     /locus_tag="VLF16_02040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011666721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008940 - nitrate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase catalytic subunit NapA"
                     /protein_id="HSX69686.1"
                     /translation="FVLWGSNMAEMHPILWSRVADRRLSQPQVKVAVLSTFEHRSFDL
                     ADIPMVFKPQTDLIILNYIANHIIESGSVNRDFVSRHTRFAKGADDIGYGLRATDPLE
                     QKAKNAANANTWSDISFEQFAAFVKPYTLERAAEETGVPAERLKALAELYADPKRKVV
                     SFWTMGFNQHTRGVWANNLIYNIHLLTGKISEPGNSPFSLTGQPSACGTAREVGTFSH
                     RLPADMLVANPKHRATAEKIWKLPPGTLQEKPGFHAVEQSRKLKDGVLKVYWTQVCNN
                     MHAGPNIMQEILPGWRNPEAFVIVSDVYPTVSAQAADLILPSAMWVEKEGAYGNAERR
                     TQFWHQLVKAPGEAKSDLWQLVEFSKHFTTDEVWPAELLAQAPQYKGKTLYEVLFRNG
                     QVDQFPTSDMAEGYANDEAAAFGFYLQKGLFEEYAAFGRGHGHDLAPFDTYHEARGLR
                     WPVVDGQETRWRYREGHDPYVEKGSGVQFYGYPDNKAIIFALPYEPPAEAPDKDFPFW
                     LSTGRVLEHWHTGSMTQRVDELYRAVPDALVYMHPDDAKELKARRGSEVKVISRRGEM
                     RARIET"
BASE COUNT          238 a          528 c          623 g          326 t
ORIGIN      
        1 gtctcgatgc gcgcgcgcat ctcgccgcgc cggctgatca ccttcacctc gctgccgcgc
       61 cgcgccttga gctccttcgc gtcgtccggg tgcatgtaca ccagggcgtc gggcaccgcg
      121 cggtacagct cgtccacgcg ctgggtcatg ctgccggtgt gccagtgttc cagcacccgg
      181 ccggtgctga gccagaaggg gaagtccttg tcgggcgcct cggccggtgg ctcgtagggc
      241 agggcgaaga tgatcgcctt gttgtccggg tagccgtaga actgcacgcc gctgcctttc
      301 tccacatagg ggtcgtgacc ctcgcggtag cgccagcggg tttcctggcc atccaccacc
      361 ggccagcgca ggccgcgggc ctcgtgatag gtgtcgaagg gcgccaggtc gtgaccgtgg
      421 ccacgaccga aggcggcgta ctcctcgaac aggcccttct gcaggtagaa gccgaaggcg
      481 gcggcctcgt cgttggcgta gccctcggcc atgtcgctgg tggggaactg gtcgacctgg
      541 ccgttgcgga acagcacctc gtacagggtc ttgcccttgt actggggtgc ctgggccagc
      601 agctcggccg gccacacctc gtcggtggtg aagtgcttgg agaattccac cagttgccag
      661 aggtcggact tcgcctcgcc cggcgccttg accagctgat gccagaactg ggtgcggcgc
      721 tcggcgttgc cgtaggcgcc ttccttctcc acccacatgg cgctgggcag gatcaggtcg
      781 gcggcctggg ccgacacggt ggggtagacg tcggagacga tgacgaaggc ctccgggttg
      841 cgccagcccg ggaggatctc ctgcatgatg ttggggccgg cgtgcatgtt gttgcagacc
      901 tgcgtccagt acaccttgag cacgccgtcc ttgagcttgc ggctctgctc cacggcgtgg
      961 aagccgggct tctcctggag ggtgcctggc ggcagcttcc agatcttctc ggcggtggcg
     1021 cggtgcttgg gattggccac cagcatgtcc gccggcaggc ggtgggagaa ggtgccgacc
     1081 tcgcgcgcgg tgccgcaggc cgagggttgc ccggtcagcg agaaggggct gttgcccggt
     1141 tcgctgatct tcccggtgag caggtggatg ttgtagatca ggttgttggc ccacacgccg
     1201 cgggtgtgct ggttgaagcc catggtccag aacgacacca ccttgcgctt ggggtccgca
     1261 tacagctcgg ccagggcctt gaggcgctcg gccggcacgc cggtttcctc ggcggcgcgc
     1321 tccagggtgt agggtttgac gaaggcggcg aactgctcga aggagatgtc gctccaggtg
     1381 ttggcgttgg ccgcgttctt cgccttctgc tccagcgggt cggtggcgcg caggccgtag
     1441 ccgatgtcgt cggcaccctt ggcgaagcgg gtgtggcggc tgacgaagtc gcggttcacc
     1501 gagccggatt cgatgatgtg gttggcgatg tagttgagga tgatcaggtc ggtctgcggc
     1561 ttgaacacca tgggaatgtc ggccaggtcg aagctgcggt gctcgaaggt ggacagcacc
     1621 gccaccttga cctgcggctg gctgagccgg cggtcggcga cccgcgacca gaggatcggg
     1681 tgcatctcgg ccatgtttga gccccagagc acgaa
//
LOCUS       DATIHC010000124         1531 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28323, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000124 DATIHC010000000
VERSION     DATIHC010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1531
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28323"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1214
                     /locus_tag="VLF16_02045"
     CDS             <1..1214
                     /locus_tag="VLF16_02045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014820015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="porin"
                     /protein_id="HSX69687.1"
                     /translation="KGGLEVGTTDKQFSFKIGGRLQVDADSFDGIYTSNGNRADETYL
                     RRARLEISGVAYKDFEYTFNRNFGETGSDDDWDEASISYTGFDPVTLTIGRMDPTFGL
                     EEATSSKWITAIERSSIYDAAGWVNDHMNGEGIRVRTTLGNMFHGEIGAYRQNLEGDD
                     SGNQYFQDEDGQNNHAVVMRGVIAPIVEKDQVLHFGASYATREVEEGYRERIRSRLQV
                     RGTTEDDVNGNRATYGDAFLDGDDSAYGLEAAYMIGPFSAQAEYLSRTAEGSEALNGN
                     DDDLEASGYNVQLAYTLTGESRGYKLDGGKFDKIKPANKQLGAWEVFYRYDSLTVDET
                     PRLPASAAPGLTLADIDTAAKVHTLGVNWYANEAIKVSANYLKATTDDVENAEGDDDG
                     DAISLRLQYVF"
     gene            1352..>1531
                     /locus_tag="VLF16_02050"
     CDS             1352..>1531
                     /locus_tag="VLF16_02050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014820016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidogalycan biosysnthesis protein"
                     /protein_id="HSX69688.1"
                     /translation="MSLIPLDSLIQIAPAAWDALLPEPQPFLRHAFLSALEDSGSVGG
                     RSGWRPSHRLLRAADG"
BASE COUNT          303 a          538 c          450 g          240 t
ORIGIN      
        1 ccaaaggtgg tctggaagta ggcaccaccg acaagcagtt ctcgttcaag atcggcggtc
       61 gcctgcaggt ggatgccgac agcttcgacg ggatctacac ctccaacggc aaccgcgccg
      121 acgagaccta cctgcgtcgc gcccgtctgg aaatctccgg tgtcgcgtac aaggacttcg
      181 agtacacctt caaccgcaac ttcggcgaaa ccggtagcga cgacgattgg gacgaagcgt
      241 ccatctccta caccggcttc gacccggtca ccctgaccat cggccgcatg gacccgacct
      301 tcggcctgga agaagccacc agctccaagt ggatcaccgc catcgagcgt tcgtcgatct
      361 atgacgccgc cggctgggtc aacgaccaca tgaacggcga aggcatccgc gttcgcacca
      421 ccctgggcaa catgttccac ggtgaaatcg gcgcctaccg ccagaacctg gaaggtgacg
      481 acagcggcaa ccagtacttc caggacgaag acggccagaa caaccatgcc gtcgtcatgc
      541 gcggtgtgat cgccccgatc gtcgagaagg accaggttct gcacttcggt gccagctacg
      601 ccacccgtga agtggaagaa ggctaccgcg agcgcatccg ttcccgcctg caggtccgcg
      661 gcaccaccga agacgacgtc aacggcaacc gcgctaccta cggcgacgcc ttcctggacg
      721 gcgacgacag cgcctacggc ctggaagctg cctacatgat cggcccgttc tccgcccagg
      781 ccgagtacct gagccgcacc gccgagggct ccgaagccct gaacggcaac gacgacgacc
      841 tggaagcttc cggctacaac gtccagctgg cctacaccct gaccggtgag tcccgcggct
      901 ataagctgga cggcggcaag ttcgacaaga tcaagccggc caacaagcag ctgggcgcct
      961 gggaagtctt ctaccgctac gacagcctga ccgtcgacga gactccgcgt ctgccggcca
     1021 gcgccgctcc gggcctgacc ctggccgaca tcgacaccgc tgccaaagtg cacaccctgg
     1081 gtgtcaactg gtacgccaac gaggccatca aggtttcggc caactacctg aaggccacca
     1141 ccgacgacgt cgagaacgcc gaaggcgacg acgatggcga cgccatcagc ctgcgcctgc
     1201 agtacgtgtt ctaagcaata acaagcgaca ctgctccttc cttggccccg ccccgtgcgg
     1261 ggccttttct tttgtgcgtc cggtacgggc cgcctgggat gggcaggagc gcggcgatat
     1321 agtgtggctt tgtgccaagc ggaccacgcc gatgtcgctg atcccactcg actcgctcat
     1381 acagatcgct cctgccgcct gggacgcgct gctgcccgag ccgcaaccct tcctgcgcca
     1441 cgcctttctc tctgccctgg aggacagcgg cagcgtcggc ggccgcagtg gctggcggcc
     1501 gtcgcatcgc ctgttgcgcg cggccgatgg c
//
LOCUS       DATIHC010000125         1614 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33031, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000125 DATIHC010000000
VERSION     DATIHC010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1614
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33031"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            560..994
                     /locus_tag="VLF16_02055"
     CDS             560..994
                     /locus_tag="VLF16_02055"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013713592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HSX69689.1"
                     /translation="MNPPQHRRADYAHFQPITTRWHDNDVYGHVNNVVYYGFFDSAVN
                     TYLIEVGGLDIHEGPVIGFVVSSSCDYFASIAFPERIEVGLRVGKLGNSSVQYELAIF
                     KAGEDEACAAGRFVHVFVDRASNRPVPIPETLRTALARLLRD"
     gene            1018..>1614
                     /locus_tag="VLF16_02060"
     CDS             1018..>1614
                     /locus_tag="VLF16_02060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003247264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HSX69690.1"
                     /translation="MQDAVIVSTARTPIAKAFRGAFNDLKSPSMAAVALRAAVERAGI
                     EAAEIEDVVMGTAMQGGTASTNLARLSLLAAGLPLSVSGQTIDRQCASGLMAISIAAK
                     QIMVDGMAVTVGAGQEQISLVQNTHMKWTATDYDPAVVKMAEHAYMPMLQTAELVAKR
                     YNISREAQDAYSLQSQQRTAAAQAAGLFADEIVPVTARK"
BASE COUNT          314 a          605 c          490 g          205 t
ORIGIN      
        1 accaccctct cccccggccc ctctcccgta aacgggagag gggaggcagt cgcgcaaggc
       61 ttaagcgccg gcgcagaacc gctccctctc ccatccatgg gagagggtcg gggagaggga
      121 gaacaggcaa cgcggagcag ccccgtagcc cggatgcaat ccgggacaca caggcacccg
      181 tcccggatta catccgggct acgactgcca ggtggcgtat cgaggcgcgc cctctcccgc
      241 cgggaacgat ggcaggacgg caccacgccg ttcaccacca ccctctcccc cgtaaacggg
      301 agagggaagg caaccgcgca aggcctaagc gccggcgcag aaccgctccc tctcccatgg
      361 atgggagagg gtcggggaga gggagagcat acaacgcgga gccgccccgt agcccggatg
      421 caatccggga aacagccacc ccgcctcccg aaacggatcc gggccacgac tgaccaatag
      481 cccgcaatac agcccacgaa tcaaagtatg ccgcgccacc gcgacctctt agggtgacag
      541 gcaagcacga ggaccaagca tgaacccacc gcagcaccgc cgcgccgact acgcgcactt
      601 ccagccgatc accacgcgct ggcacgacaa cgacgtctac ggccacgtca acaacgtcgt
      661 ctactacggc ttcttcgaca gcgcggtgaa cacctacctg atcgaggtcg gcggcctgga
      721 catccacgaa ggcccggtca tcggcttcgt ggtcagctcg tcgtgcgact acttcgcctc
      781 catcgccttc cccgagcgca tcgaggtcgg cctgcgcgtc ggcaagctgg gcaacagctc
      841 ggtgcagtac gagctggcca tcttcaaggc cggcgaagac gaggcctgcg ccgccgggcg
      901 cttcgtccac gtgttcgtcg accgcgccag caaccgcccg gtaccgattc ccgaaaccct
      961 gcgcacggcg ctcgcccgcc tgctgcgcga ctgacacaac aacaggagat ttccgccatg
     1021 caagacgccg tcatcgtttc caccgcccgc acgccaatcg ccaaggcctt ccgcggtgcg
     1081 ttcaacgacc tcaagtcgcc gtccatggcc gccgtcgccc tgcgcgccgc ggtcgagcgc
     1141 gccggcatcg aggccgccga gatcgaggac gtggtgatgg gcaccgccat gcagggcggc
     1201 accgcctcca ccaacctggc gcgcctgtcg ctgctggccg ccggcctacc gctgtcggtc
     1261 agcggccaga ccatcgaccg ccagtgcgcc tccggcctga tggccatctc catcgccgcc
     1321 aagcagatca tggtcgacgg catggccgtg accgtcggcg ccggccagga gcagatcagc
     1381 ctggtgcaga acacccacat gaagtggact gccaccgact acgacccggc cgtggtgaag
     1441 atggccgagc acgcctacat gccgatgctg cagaccgccg agctggtggc caagcgctac
     1501 aacatcagcc gcgaggcgca ggacgcctac tccctgcagt cgcagcagcg caccgccgcc
     1561 gcccaggccg ccggactgtt cgccgacgag atcgtgccgg tcacagcgcg caag
//
LOCUS       DATIHC010000126         3431 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35493, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000126 DATIHC010000000
VERSION     DATIHC010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3431)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3431)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3431
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35493"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1013
                     /gene="pilJ"
                     /locus_tag="VLF16_02065"
                     /gene_synonym="np20"
     CDS             <1..1013
                     /gene="pilJ"
                     /locus_tag="VLF16_02065"
                     /gene_synonym="np20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="chemotaxis chemoreceptor PilJ"
                     /protein_id="HSX69691.1"
                     /translation="KNERNQAAILRLLDEIADLADGDLTVAATVTEDFTGAIADSINY
                     SIDQLRDLVATINSTAVQVAAAAQETQSTAMHLAEASEHQAQEIAGASAAINEMAVSI
                     DQVSANAAESSAVAERSVAIANKGNEVVHNTITGMDNIREQIQDTSKRIKRLGESSQE
                     IGDIVSLINDIADQTNILALNAAIQASMAGDAGRGFAVVADEVQRLAERSSAATKQIE
                     ALVKTIQTDTNEAVISMEQTTSEVVRGARLAQDAGVALEEIEKVSKTLAALIQNISNA
                     ARQQASSAGHISNTMNVIQEITSQTSAGTTATAKSIGNLAKMASEMRRSVSGFTLPEG
                     QA"
     gene            1082..1945
                     /locus_tag="VLF16_02070"
     CDS             1082..1945
                     /locus_tag="VLF16_02070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003458796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CheR family methyltransferase"
                     /protein_id="HSX69692.1"
                     /translation="MQPSGVWALKPLVDMSQAEFRDWQALLEERTGVVINEQRRAFLQ
                     TNLTARMRELGVGDYASYYRQVTDGPRGAVEWSTLLDRLTVQETRFFRHRPSFEVLER
                     YLRGRLAIDEQQQPLALWSVGCSSGEEPYSMAICAAEVLRELDSQRQFGVTGTDISLN
                     VLNKAREAIYGARKLEQLDSDLCERYFLAQADGRYQVMPDLAARVCVARLNVLELAKA
                     PQSGMDVIFCQNLLIYFRRWRRREILNRLAERLAPGGMLVVGVGEVVGWQHPDLVPVA
                     DERVLAFTRKG"
     gene            1968..>3431
                     /locus_tag="VLF16_02075"
     CDS             1968..>3431
                     /locus_tag="VLF16_02075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009927 - histidine phosphotransfer kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hpt domain-containing protein"
                     /protein_id="HSX69693.1"
                     /translation="MGDRHDYVALEWVKGEIAETLKQARQALEAFVENPQDATRMRFC
                     QTYVHQVHGTLQMVEFYGAALLAEEMEQLTQALLEGRVGNQAEALEVLMQAILQLPAY
                     LDRIQSARRDLPMVVLPLLNDLRAARGENLLSETSLFSPDLSGRLPALSLDSLEKLRT
                     AELPVLLRKLRQMLQMALVGVIRNQDLATNLGYMARVFARLEALCKEAPLGPLWQIAS
                     GMVEGLANGSVVNSTSVRTLLRQVDKELKRLVDDGADGINQGAPDELTKNLLFYVAKA
                     PAQSPRIRSLKDQYRLDDALPDSGVVDEERARLAGPDRDAMRSVVGALCEELVRVKDS
                     LDLFVRSDRQQVAELDALLAPLKQIADTLAVLGFGQPRKVILDQIDVVHALSLGQREP
                     NDAVLMDVAGALLYVEATLAGMVGPGDDAQNEQSHLPTTDVAQIHQLVIKEARTGLEQ
                     AKDAIIEFIASQWNHEHLARVPELLTQVRGGLAMIPLA"
BASE COUNT          628 a         1152 c         1122 g          529 t
ORIGIN      
        1 agaagaacga gcgtaaccag gcggcgattc tgcgactgct cgacgaaatc gccgacctcg
       61 cggacggtga cctgaccgtg gccgcgaccg taaccgagga cttcaccggt gcgatcgcgg
      121 actccatcaa ctactccatc gaccagctgc gcgatctggt agcgacgatc aactcgaccg
      181 ccgttcaggt ggccgccgcc gcccaggaaa cccagtccac cgccatgcac ctggccgagg
      241 cttccgagca ccaggcccag gaaatcgccg gcgcctccgc ggcgatcaac gaaatggcag
      301 tgtccattga ccaggtatcg gcgaacgccg cggaatcctc cgcggtagcg gaacgttccg
      361 tagccatcgc caacaagggt aacgaggtgg tgcacaacac catcaccggc atggataaca
      421 tccgtgagca gatccaggac acctcgaagc ggatcaagcg cctcggtgaa tcgtcccagg
      481 agatcggtga catcgttagc ctgattaacg acattgccga ccagaccaac atcctcgcac
      541 tgaacgccgc catccaggcg tccatggccg gtgacgcggg ccgtggcttc gccgtggtag
      601 cggacgaagt acagcgcctc gcggaacgtt cctctgccgc gaccaagcag atcgaggccc
      661 tggttaagac cattcagacc gacaccaacg aagcggtaat ctccatggag cagaccactt
      721 ccgaagtggt gcgcggtgca cgcctggcgc aggacgccgg tgtggccctg gaggagatcg
      781 agaaagtatc caagaccctc gcggccttga tccagaacat ctccaacgcc gcccgtcagc
      841 aggcctcttc ggccggccac atctccaaca ccatgaacgt gattcaggag atcacctcgc
      901 agacttccgc aggtaccacc gctaccgcca agagcattgg taacctggcc aagatggcca
      961 gcgagatgcg tcgttcggta tccggcttca ccctgccgga aggccaggcc tgatcgaggg
     1021 aggtgcagcg gcctgagagg gtcgctgccc ggggcattcg gccatgagcg aggggcacgg
     1081 catgcagcca agcggcgtct gggccttgaa acccctggtc gacatgtcgc aggcggagtt
     1141 tcgcgactgg caggccctgc tggaagagcg gaccggcgtg gtgatcaacg agcagcgccg
     1201 cgccttcctg cagaccaacc tgaccgcgcg catgcgtgag ctgggcgtcg gcgactacgc
     1261 cagctactac cgccaggtca ccgacggccc gcgcggcgcg gtggagtggt cgaccctgct
     1321 ggaccgcctc accgtgcagg agacccggtt cttccgccat cgcccgtcct tcgaggtgct
     1381 ggagcgttac ctgcgcgggc gcctggccat cgacgaacag caacaacccc tggccctgtg
     1441 gagcgttggt tgctccagcg gcgaggagcc ttattcgatg gcgatctgcg ccgccgaggt
     1501 gctgcgcgag ctggacagcc agcggcagtt cggcgtgacc ggcaccgaca tcagcctgaa
     1561 cgtgttgaac aaggcgcgcg aagcgatcta cggcgcgcgc aagctggaac agttggacag
     1621 cgacctgtgc gagcgttact tcctcgccca ggccgatggt cgttatcaag tgatgccgga
     1681 cctggcggca cgcgtctgtg tcgcccggtt gaatgtgctg gagctggcca aggcgccgca
     1741 atccggcatg gacgtaatct tttgccagaa cctgctgatc tatttccgcc gctggcgccg
     1801 ccgcgaaatc ctcaaccgcc tggccgagcg cctggcgccg ggaggcatgc tggtggtggg
     1861 cgtgggggaa gtggtcggtt ggcagcatcc ggacctggtg ccggtggccg acgagcgggt
     1921 cctggcgttc acccgcaagg gctaagacaa gaatgactgg agcaggtatg ggtgatcggc
     1981 acgattatgt cgccctagag tgggtcaagg gcgagatcgc agaaaccctg aagcaggccc
     2041 gccaggccct ggaggcgttc gtcgagaacc cgcaggacgc cacgcgcatg cgtttctgcc
     2101 agacctacgt gcaccaggtc cacggcaccc tgcagatggt cgagttctac ggcgcggctc
     2161 tgctcgccga ggaaatggag cagctgaccc aggccctgct ggagggccgc gtcggcaacc
     2221 aggccgaggc cctggaagtg ctgatgcagg cgatcctgca actgccggcc tatctcgacc
     2281 gcatccagag cgcccgccgc gacctgccga tggtcgtgct gccgctgctc aacgatctgc
     2341 gcgccgcccg cggcgagaac ctgctgtcgg aaaccagtct gttctccccg gacctgtccg
     2401 gccgcctgcc ggccttgtcg ctggattcgc tggaaaagct gcgcaccgcc gagctgccgg
     2461 tgctgctgcg caagctgcgg cagatgctgc agatggccct ggtcggggtg atccgcaacc
     2521 aggacctggc caccaacctc ggttacatgg cgcgtgtctt cgcccgcctg gaggccctgt
     2581 gcaaggaggc cccgctcggc ccgctgtggc agatcgcctc gggcatggtc gaaggcctgg
     2641 ccaacggcag cgtggtcaac agcacgtcgg tgcggaccct gctgcgccag gtcgacaagg
     2701 aactcaagcg cctggtcgac gacggcgccg acggcatcaa ccagggcgcc ccggacgagc
     2761 tgaccaagaa cctgctgttc tacgtggcca aggcgccggc ccagtcgccg cgcatccgca
     2821 gcctcaagga ccagtaccgt ctcgacgacg ccctgccgga cagcggcgtg gtcgacgagg
     2881 agcgcgcccg tctggccggc ccggatcgcg acgccatgcg ttcggtggtc ggtgccctat
     2941 gcgaggagct ggtgcgggtc aaggacagcc tcgacctgtt cgtgcgcagc gaccgccagc
     3001 aggtcgccga gctggatgcc ctgctggcgc cgctcaagca gatcgccgac accctggccg
     3061 tgctcggctt cggccagccg cgcaaggtca tcctcgacca gatcgacgtg gtccatgccc
     3121 tgtccctcgg ccagcgcgaa cccaacgacg ccgtgctgat ggacgtggcc ggcgcgctgc
     3181 tctatgtcga ggccaccctg gccggcatgg tcggccccgg cgacgacgcg cagaacgaac
     3241 agagtcatct gcccaccacc gacgtggcgc agattcacca gctggtgatc aaggaggcgc
     3301 gtaccggcct ggaacaggcc aaggacgcga tcatcgagtt catcgcctcg cagtggaatc
     3361 acgagcacct ggcccgcgtg ccggagctgc tgacccaggt ccgtggcggc ctggcgatga
     3421 tcccgctggc c
//
LOCUS       DATIHC010000127         2095 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21164, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000127 DATIHC010000000
VERSION     DATIHC010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2095
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21164"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..277)
                     /locus_tag="VLF16_02080"
     CDS             complement(<1..277)
                     /locus_tag="VLF16_02080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017736181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3325 domain-containing protein"
                     /protein_id="HSX69694.1"
                     /translation="MILAAALCYAGMAGLCLAMDRHHAQVWKAKAPNRQRLLRVAGWL
                     LLALAVWPCVQIWGGAVGPVVWCGMLSVGAFVLVLLLPYRPRIAALLA"
     gene            complement(292..1935)
                     /locus_tag="VLF16_02085"
     CDS             complement(292..1935)
                     /locus_tag="VLF16_02085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010490339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-associated TM helix domain-containing
                     protein"
                     /protein_id="HSX69695.1"
                     /translation="MSKVESGAAEGGLRQAMAWLHTWGGLWACWVLFVIFLTGSLGVF
                     DEPITRWMKPHLPQAAEASGDTGLDDGFDRPGAVRMGQAWFEENQPDAHFWGVGLPSD
                     EDPSIRLFWQDPQENFHNTRIDARTGQPVDGSHERDSEGGHHFVHMHFEFHGGTAGIW
                     FVGAFTMAMLVALVSGIVIHKRIFKDFFTFRPGKGQRSWLDAHNALSVLSLPFQLMIA
                     YTGLATFYMLYMPAGIVAHYDSEEAYFADLLTQPQHQEITGIAAPLAKVDELLVRAEQ
                     QLQRPASFVSIEHPNDSSASVLVFGRFIEKPGEYRLLGDGGGRVFFDGVSGAQTDIQM
                     PGELRGGAAQDVQSVMRNLHFAAFGGHLVRWLYFLSGLAGAAMLATGALLFMVKRRQR
                     SLNEFGSATPRVYRVIEVLNVGTLSGLCIACVAFFWGNRLLPLGIDDRPVWEIVVFFV
                     VWLLSFVHAGMRPAARAWVEQLLALAALCLLLPLLNWLSVGEHLLMYLQRGDGERAGV
                     ELVALATGVLSLWGARRIARPRTVPARARQRAAVAEAQS"
BASE COUNT          371 a          727 c          728 g          269 t
ORIGIN      
        1 ccgccagcag ggcggcgata cgcgggcgat agggcagcag cagtaccaac acgaaagcgc
       61 cgacgctgag catgccgcac cagaccacgg ggccgacggc gccgccccag atctgcacgc
      121 agggccatac ggccagcgcc agcagcagcc agccggccac gcgcagcagg cgctgacgat
      181 tgggcgcctt ggccttccac acctgggcgt ggtggcggtc catggccagg cacaggccgg
      241 ccatgccggc gtagcagagc gcggcggcga gaatcacggc gagggacagg ctcatgattg
      301 cgcctccgcc acggcagcgc gctggcgagc acgcgccggc acggtccgcg gccgggcgat
      361 gcgtcgggcg ccccacagcg acagcacgcc ggtggccagc gccaccaatt cgacaccggc
      421 gcgctcgccg tcgccgcgct gcagatacat cagcagatgc tcgccgacgc tcagccagtt
      481 gagcagcggc agcagcagac acagcgcagc cagcgccagc agctgctcga cccaggcacg
      541 cgccgccgga cgcataccgg cgtgaacgaa gctcagcagc cacacgacga agaacaccac
      601 gatctcccat accggacggt cgtcgatgcc cagcggcagc aggcgattgc cccagaagaa
      661 cgccacgcag gcgatgcaca ggccgctgag ggtaccgacg ttgagtacct cgatcacccg
      721 gtacacgcga ggggtggcgg agccgaactc gttcagcgag cgctggcggc gcttgaccat
      781 gaacagcagg gcgccggtgg ccagcatggc cgcgccggcc aggccgctga ggaaatacag
      841 ccagcgcacc aggtggccgc cgaacgcggc gaagtgcagg ttgcgcatca ccgactgcac
      901 gtcctgcgcg gcgccgccac gcagctcgcc gggcatctgg atatcggtct gcgcgccgct
      961 gacgccgtcg aagaacaccc ggccgccgcc gtcgccgagc aggcggtatt cgcccggctt
     1021 ctcgatgaag cggccgaaca ccagcaccga ggcgctgctg tcgttggggt gttcgatgct
     1081 gacgaagctg gccgggcgct gcagctgctg ctcggcgcgc accagcaatt cgtcgacctt
     1141 ggccagcggc gcggcgatgc cggtgatctc ctggtgctgc ggctgggtca gcaggtcggc
     1201 gaagtaggcc tcctcgctgt cgtagtgggc gacgatgccg gccggcatgt acagcatgta
     1261 gaaggtcgcc aggccggtgt aggcgatcat cagctggaac ggcaggctca gcaccgacag
     1321 cgcgttgtgc gcatccagcc agctgcgctg gcccttgccc gggcggaagg tgaagaagtc
     1381 tttgaagatg cgcttgtgga tgacgatgcc gctgaccagc gccaccagca tggccatggt
     1441 gaaggcaccg acgaaccaga tgccggcggt gccgccgtgg aattcgaagt gcatgtgcac
     1501 gaagtgatgg ccgccctcgc tgtcacgctc gtgcgagccg tccaccggct ggccggtgcg
     1561 ggcgtcgatg cgggtgttgt ggaagttctc ctgcgggtcc tgccagaaca ggcggatcga
     1621 cgggtcctcg tccgacggca ggccgacgcc ccagaagtgc gcgtcgggct ggttctcctc
     1681 gaaccaggcc tggcccatgc gcaccgcgcc ggggcggtcg aaaccgtcgt ccaggccggt
     1741 gtcgccgctg gcctcggcgg cctgcggcag gtgcggcttc atccagcggg tgatcggctc
     1801 gtcgaagacc cccaggctgc cggtgaggaa gatcacgaac agcacccagc acgcccacag
     1861 cccaccccag gtgtgcagcc aggccatggc ctggcgcagg ccgccctcgg cggcgccact
     1921 ctcgaccttg ctcatgcctc acctcccagc agaatgccgg cgccggtcag cgccagcgag
     1981 gcgatcacca gcacccacca gatgcgcttc aggttggggg tggcgaacac ccagacgatc
     2041 accgcggtgt acaccgcgaa actggtcagc gaagcggcga ggatcgcctg gctct
//
LOCUS       DATIHC010000128         2389 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33033, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000128 DATIHC010000000
VERSION     DATIHC010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2389
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33033"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            38..1414
                     /gene="ppnN"
                     /locus_tag="VLF16_02090"
     CDS             38..1414
                     /gene="ppnN"
                     /locus_tag="VLF16_02090"
                     /EC_number="3.2.2.10"
                     /EC_number="3.2.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003182990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide 5'-monophosphate nucleosidase PpnN"
                     /protein_id="HSX69696.1"
                     /translation="MTLVRNKINASVSPKGSLETLSQREVQQLRETGSGTIYALFRQC
                     ALAILNTGSHSDNAKTILEAYPDFEVIIHQQDRGIRLELRNAPADAFVDGEMIASTRE
                     MLFSALRDIVYTQSELENQRIDFESSQGITDYVFHLLRNARTLRAGVEPRMVVCWGGH
                     SISSEEYKYTKKVGHELGLRRLDVCTGCGPGVMKGPMKGATIAHAKQRILGARYLGLT
                     EPGIIAAEAPNPIVNELVILPDIEKRLEAFVRVGHGIIVFPGGVGTAEEFLYLLGILT
                     HPDNAEIPFPVVLTGPRSAELYLQQLHDFIGATLGRAAQQRYKMIVNDPAEVSRQMAA
                     GIKEVEQFRRERNDAFHFNWLLKIDEGFQRPFEPTHASMAALNLSREQPLHQLAANLR
                     RAFSGIVAGNVKAHGIHMIEEHGPYEIRGDQAIMQPLDRLLQAFVEQHRMKLPGGSAY
                     VPCYRVIS"
     gene            1617..>2389
                     /locus_tag="VLF16_02095"
     CDS             1617..>2389
                     /locus_tag="VLF16_02095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSX69697.1"
                     /translation="MSFASLGLSEALAGAVEAAGYAQPTPVQQRAVPAVLQGRDLMVA
                     AQTGTGKTAGFALPILERLFPGGHPDREHRHGPKQPRVLVLTPTRELAAQVHDSFKIY
                     ARDLPLVSACIFGGVGMNPQVQALAKGVDLLVACPGRLLDLAGQGSVDLSRVEILVLD
                     EADRMLDMGFIHDVKKVLAKLPTKRQNLLFSATFSKDIIALATKLLHDPERIEVTPPN
                     TTVERIEQRVFRIPATHKRALLAHLITLGAWEQVLVFTRT"
BASE COUNT          427 a          898 c          712 g          352 t
ORIGIN      
        1 gttccggcgc aggcgcgcgt ccgacacgga agcctcgatg actctggtac gcaacaagat
       61 caatgcatcg gtcagcccca agggcagcct cgaaaccctc tcccagcgcg aagtgcagca
      121 actgcgcgaa accggctccg gcaccatcta cgccctgttc cgccagtgcg cgctggccat
      181 cctcaacacc ggctcgcaca gcgacaacgc caagaccatc ctcgaggcct accccgactt
      241 cgaggtgatc atccaccagc aggaccgcgg catccgcctg gagctgcgca acgccccggc
      301 ggacgccttc gtcgacggcg agatgatcgc cagcacccgc gagatgctgt tcagcgccct
      361 gcgcgacatc gtctacacgc agagcgagct ggaaaaccag cgcatcgact tcgagagctc
      421 ccagggcatc accgactacg tcttccacct gctgcgcaac gcccgcaccc tgcgcgccgg
      481 cgtcgagccg cggatggtgg tgtgctgggg cgggcactcg atcagcagcg aggaatacaa
      541 gtacaccaag aaggtcggcc acgagctcgg cctgcgccgc ctcgacgtct gcaccggctg
      601 cggcccgggc gtgatgaagg gaccgatgaa gggcgccacc atcgcccacg ccaaacagcg
      661 cattctcggc gcccgctacc tgggcctgac cgagccgggc atcatcgccg ccgaggcgcc
      721 caacccgatc gtcaacgagc tggtgatcct gccggacatc gagaagcgcc tggaggcctt
      781 cgtccgcgtc ggccacggca tcatcgtctt ccccggcggc gtgggcacgg ccgaggaatt
      841 cctctacttg ctgggtatcc tcacccaccc ggacaacgcc gagatcccct tcccggtcgt
      901 gctcaccggc ccgcgaagcg ccgagctgta cctgcagcag ctgcacgact tcatcggtgc
      961 gacgctcggc agggccgccc agcagcgcta caagatgatc gtcaacgatc cggccgaggt
     1021 atcccggcag atggcggccg gcatcaagga ggtggagcag ttccgccgcg agcgcaacga
     1081 cgccttccac ttcaactggc tgctgaagat cgacgagggc ttccagcgcc cgttcgagcc
     1141 gacccacgcc agcatggccg cgctcaacct ctcccgcgag cagccgctgc accagctggc
     1201 ggccaacctg cgccgcgcct tctccggcat cgtcgccggt aacgtaaagg cccacggcat
     1261 ccacatgatc gaggagcacg gcccctacga gatccgcggc gaccaagcca tcatgcagcc
     1321 gctcgaccgc ctgctgcagg ccttcgtcga gcagcaccgc atgaagctgc ccggcggcag
     1381 cgcctacgtg ccctgctacc gggtgatcag ctgagcgcaa gacgggccaa aagctccgac
     1441 gaggagctag cggcccgacc gcattgctct gttatactcc gggcacccgc caggcttgcg
     1501 cccggatgct cggcaaccca tcgcccagca gtaccggacg ggatcgttca gcgagagcga
     1561 ttcaagccag gcaacttccc catcgggcct tcgccccatt tttgacagga tgactcatgt
     1621 cctttgcttc cctcggtctc tccgaggcat tggccggcgc cgttgaagcc gccggctacg
     1681 cccagcccac tccggtgcag cagcgggccg ttcccgccgt gctgcaaggc cgcgacctga
     1741 tggtcgccgc ccagacgggt actggtaaaa ccgcaggctt cgccctgccg atcctggagc
     1801 gcctgttccc gggcggccat ccggaccgcg aacaccgcca cggcccgaaa cagccgcgcg
     1861 tgctggtgct caccccgacc cgcgagctgg cggcccaggt gcacgacagc ttcaagatct
     1921 acgcccgcga cctgccgctg gtcagcgcct gcatcttcgg cggtgtcggc atgaacccgc
     1981 aggtccaggc cctggccaag ggtgtcgacc tgctcgtcgc ctgccccggc cgcctgctcg
     2041 acctggccgg ccaaggcagc gtcgacctct cccgcgtgga gatcctggtc ctcgatgaag
     2101 ccgaccgcat gctcgacatg ggcttcatcc atgacgtcaa gaaggtcctg gccaagctgc
     2161 cgaccaagcg ccagaacctg ctgttctcgg cgaccttctc caaggacatc atcgccctgg
     2221 cgaccaagct gctgcacgat cccgagcgca tcgaggtgac gccgccgaac accacggtcg
     2281 agcgcatcga gcagcgcgtg ttccgcattc cggccacgca caagcgcgcc ctgctggcgc
     2341 acctgatcac cctcggcgcc tgggaacagg tgctggtgtt cacccgcac
//
LOCUS       DATIHC010000129         1647 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11994, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000129 DATIHC010000000
VERSION     DATIHC010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1647
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11994"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..730)
                     /locus_tag="VLF16_02100"
     CDS             complement(<1..730)
                     /locus_tag="VLF16_02100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020308402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="solute carrier family 23 protein"
                     /protein_id="HSX69698.1"
                     /translation="MSEYNDPLPRQILSGAQMLFVAFGALVLMPLITGMDPNVALFTA
                     GVGTLLFQLATGRQVPVFLASSFAFIAPIIAAKGEFGMPAVLGGVVAAGFVYMLLGLA
                     VKLKGPGFIDRILPPVVIGPVVISIGLALSPVAVNMAMGKTGDAAAQLVPYQTAMIIS
                     MSALVTTVLVAVLGRGLFRLVPILSGIAVGCLLSAFFGVIDTTGIAAAAWLEMPKFMA
                     PEFHLGAILYMVPVALAPAIEHIGG"
     gene            complement(733..1371)
                     /gene="upp"
                     /locus_tag="VLF16_02105"
     CDS             complement(733..1371)
                     /gene="upp"
                     /locus_tag="VLF16_02105"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0008655 - pyrimidine-containing compound
                     salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HSX69699.1"
                     /translation="MPIREIRHPLIRHKIGLMRRADISTKNFRELAQEVGALLTYEAT
                     NDLPLEHYEIEGWAGPVQVEKIAGKKITVVPILRAGIGMLDGVLSLIPGAKVSAVGVA
                     RNEETLQAHTYLEKLAPEIDERLALIIDPMLATGGSMVATIDLLKKAGCKEIRAMVLV
                     AAPEGIKTVADAHPDVTIYTASVDQRLNEHGYIIPGLGDAGDKIFGTKQKDA"
BASE COUNT          274 a          529 c          564 g          280 t
ORIGIN      
        1 ccccgccgat atgctcgatg gccggggcca gggccaccgg caccatatac aggatggcgc
       61 cgaggtggaa ttccggggcc atgaacttgg gcatttccag ccaggccgcg gccgcgatgc
      121 cggtggtgtc gatcaccccg aagaaggccg agagcaggca gccgacggcg atgccggaga
      181 gaatcggcac caggcgaaac aggccgcgac cgagcacggc caccagcacg gtggtgacca
      241 gcgcggacat ggagatgatc atggcggtct ggtagggcac cagttgcgcg gcggcgtcgc
      301 cggtcttgcc catggccatg ttcaccgcca ccggcgacag ggccaggccg atggagatca
      361 ccaccgggcc gatcaccacc ggcggcagga tgcggtcgat gaagcccggg cccttcagct
      421 tcacggccag gccgaggagc atgtagacga agccggcggc gaccacgccg ccgagcaccg
      481 cgggcatgcc gaactcaccc ttggcggcga tgatcggcgc gatgaaggcg aagctcgagg
      541 ccaggaacac cggcacctgg cggccggtgg ccagctggaa cagcagggtg ccgacgccgg
      601 cggtgaacag cgccacgttc gggtccatgc cggtgatcag cggcatcagc accagcgcgc
      661 cgaaggcgac gaacagcatc tgcgcgcccg aaaggatctg ccgcggcagc gggtcgttgt
      721 actcgctcat gctcaggcgt ccttctgctt ggtgccgaag atcttgtcgc cggcgtcgcc
      781 gaggccggga atgatgtagc cgtgttcgtt caggcgctgg tcgacggacg cggtatagat
      841 agtcacgtcc gggtgagcgt cggccacggt cttgatgcct tccggcgcgg ccaccagcac
      901 catggcgcgg atttccttgc agccggcctt cttcagcagg tcgatggtgg cgaccatgga
      961 gccgccggtg gccagcatcg ggtcgatgat cagcgccagg cgttcgtcga tctccggcgc
     1021 cagcttctcc agataggtgt gggcctgcag ggtctcctcg ttgcgggcga cgcccacggc
     1081 gctgaccttg gcccccggga tcaggctgag cacgccgtcg agcatgccga tgccggcacg
     1141 caggatcggc accacggtga tcttcttgcc ggcgatcttc tccacctgca ccggcccggc
     1201 ccaaccctcg atctcgtagt gctccagcgg caggtcgttg gtcgcctcgt aggtcagcag
     1261 ggcgcccact tcctgggcca gttcgcggaa gttcttggtg ctgatgtcgg cgcggcgcat
     1321 cagaccgatc ttgtggcgga tcagcgggtg gcggatctca cggatgggca tgcgaggttc
     1381 tccggggcgg gaagtgaatg ctggctagag taatgcagag ggtgcttcgg ctagaagccg
     1441 cgcagtttac cgggttgcct gagcaagcgg tcagaaaatc tggccccggg cttgccctcc
     1501 gcggttcatc tgagtacctt tgccggccat tttttatgac ctaccatcct tggcggtcac
     1561 ccttcgggcc gtcgctggag cgacgttgga aattgctccc ggcaatttct cagccagccc
     1621 ctttttcacc ctatcccgga gcctgcc
//
LOCUS       DATIHC010000130         5698 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_9684, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000130 DATIHC010000000
VERSION     DATIHC010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5698)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5698)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5698
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9684"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            266..2488
                     /locus_tag="VLF16_02110"
     CDS             266..2488
                     /locus_tag="VLF16_02110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004374013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HSX69700.1"
                     /translation="MKAFGKILGLVVLGLLLIVVGLGFALTHLFDPNDYKDEIQQLAR
                     DKANLELQLKGDIGWSLFPWLGLELTEATLASAESPEKPFANVRLLGLSVRVLPLLYK
                     EVQMSDIRVDGLDLTLQRDEKGRGNWEGVGQPAEPAASQPAAQTSEQQDAPTAQTTDE
                     SGKPVKLDIDSLTISNSRVDYHDAQSGKQFSAEGIELSTGAIREGSDIPVKLLAFLGT
                     NQPVLRAKTELQGLLRFDRALKRYQLLDLKLAGEASGEPLNGKTLTFASQGQLLLDQS
                     AQVAEWTGIKLSANQLRALGELKLRDLDKTAQLEGNLSLAQFNLREFLDGLGFALPAM
                     SDKSTLERFEMSARLAGTPNSVTLSDLALKLDDSTFSGTLAVSDFAKQALRAQLKGDK
                     LDLDRYLPPQNQEDGASAARKSEVKQVAAAAGASGTTPLPSAPTQQAWSSEPLLPLET
                     LRKLDIEAGIGLGELTLSKLPIEDARIALTAKGGLIDLKELRGGLHGGEFAVRSRLDA
                     RPAVPVLTANKQLKRIPVEKLIEARGEKAPVRGELDLSADVRTQGNSEKAWIDALNGT
                     ASFSLSDGVLVDANLEQQLCQGIATLNRKSLSGEPRGKDTPFEELHGSLKFTNGVASN
                     PDLKARIPGLTVNGNGDLDLRVLGVDYRVGIVIEGDKSAMPDPACQVNERYVGLEWPL
                     RCRGPLELGAKACRLDKDGLGKIAAKLAGDKLNEKLEEKLGDKVSPELKDALKGLFNR
                     "
     gene            2485..3552
                     /gene="mutY"
                     /locus_tag="VLF16_02115"
     CDS             2485..3552
                     /gene="mutY"
                     /locus_tag="VLF16_02115"
                     /EC_number="3.2.2.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019406010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HSX69701.1"
                     /translation="MSPEQFNGAVLAWYDIHGRKDLPWQQGITPYRVWVSEIMLQQTQ
                     VGTVLGYFDRFMEALPTVQALAEAPEDEVLHLWTGLGYYTRARNLHKAAKLVVERHGG
                     EFPRSVEQLAELPGIGRSTAGAIASLSMGLRAPILDGNVKRVLARYKAQHGYPGEPKV
                     ADQLWQLAEQLTPHARVNHYTQAMMDLGATLCTRSKPSCLLCPVRYGCRAHLLGRETD
                     FPESKPRKALPQKRTLMPLLANREGAILLYRRPSSGLWGGLWSLPELDDIGALDPLAS
                     QHALHVGERRELAGLTHTFSHFQLAIEPWLVRVEQASPAVAAGDWLWYNLASPPRLGL
                     AAPVKKLLKRAEEALNAGEDS"
     gene            3549..3821
                     /locus_tag="VLF16_02120"
     CDS             3549..3821
                     /locus_tag="VLF16_02120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HSX69702.1"
                     /translation="MSRTIHCRKFNEDLPGLDRPPYPGAKGQDIYDNVSKKAWDEWQA
                     HQTMLINERRLNMMNAEDRKFLQAEMDKFLSGEDYAKADGYVPPSA"
     gene            3931..4006
                     /locus_tag="VLF16_02125"
     tRNA            3931..4006
                     /locus_tag="VLF16_02125"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3964..3966,aa:Phe,seq:gaa)
     gene            4098..4748
                     /locus_tag="VLF16_02130"
     CDS             4098..4748
                     /locus_tag="VLF16_02130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008052342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HSX69703.1"
                     /translation="MEFIQLVIDFILHIDRHLAELTAAYGPWIYAILFLIIFCETGLV
                     VTPFLPGDSLLFVAGAIATQDAMNVHIMVVLLIIAAILGDAVNYSIGRFFGTRLFANP
                     DSKIFRRRYLEVTEAFYAKHGGKTIILARFVPIVRTFAPFVAGMGHMPYRRFALYNVI
                     GAVTWVTLFSYAGYFFGNLPVVQSNLHYLIVAIIFVSILPGVIEIIRHRRAAARSQ"
     gene            4855..>5698
                     /locus_tag="VLF16_02135"
     CDS             4855..>5698
                     /locus_tag="VLF16_02135"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HSX69704.1"
                     /translation="MTASFTVGHSPRFAESGLYARLAQAGVDLRSLTRADEAQPGALE
                     VLLLDAGLLSASPLEDWQACGASLVAFEAPAGVLPLPAAASEDELIALLGFAAEQFRL
                     RQKTDQLAAALHSKDGDLQKLVDVGLALSAEKDLERLLSKILTEGRRLSNSDAASLFL
                     VDNKGEQPQLLFKLTQNASIPTRFQEQRMPLTEASIAGYVALTSTELNIADAYAIPAE
                     APYRFNRSFDLQVGYRTLSLLAIPMLNHRHEVVGVLEFINCQSAGGEPIAFDEVMAAS
                     LRALA"
BASE COUNT         1011 a         2069 c         1783 g          835 t
ORIGIN      
        1 gtcttcatta ttgtcatgtc ggcagcctac cctcgcggca gcggcgatgg acgggcctgc
       61 gccgccaaat cgtctttccg cgcacgccac cggatgccgg ccgcccggga accggccacc
      121 gacttcgcca tccaaacccc agcccatcac gacccgcaca gcatcgcgcc gcgggccggg
      181 ccatcgccga gcgggtcgcc gcctcgctcc gacgcggcgt tatactcccg cctctccgta
      241 gaagactctc cacaaggact ggtccatgaa agcctttggc aaaatcctgg gtctggtagt
      301 acttggcctg ctgttgatcg tcgtaggcct cggttttgcc ctgacccatc ttttcgatcc
      361 caacgactac aaggacgaga tccagcaact ggcccgcgac aaggccaacc tcgagctgca
      421 gctcaagggt gacatcggct ggagcctgtt cccctggctc ggcctggagc tgaccgaggc
      481 caccctggcc agcgccgaat ccccggaaaa acccttcgcc aacgtgcgcc tgctcggcct
      541 gtcggtgcgc gtgctgccgc tgctgtacaa ggaagtgcag atgagcgaca tccgtgtcga
      601 cggtctcgac ctgaccctgc agcgcgacga gaaaggccgc ggcaactggg aaggcgtggg
      661 ccagccggcc gagccggcag cgagccaacc ggcagcgcag acctccgagc agcaagacgc
      721 gccgaccgcc cagaccaccg acgagagcgg caagccggtg aagctggaca tcgacagcct
      781 gaccatcagc aattcgcgcg tggactatca cgacgcgcag agcggcaagc agttcagcgc
      841 cgagggcatc gagctcagca ccggcgccat ccgcgaaggc agcgatatcc cggtcaagct
      901 gctggcgttc ctcggcacca accagccggt gctgcgcgcc aagaccgagc tgcagggcct
      961 gctgcgcttc gaccgcgcgc tcaagcgcta ccagctgctc gacctcaagc tggccggcga
     1021 ggcctccggc gagccgctca acggcaagac cctgaccttc gccagccagg gccagctgct
     1081 gctcgatcag tccgcccagg tcgccgaatg gaccggcatc aagctctccg ccaaccagct
     1141 gcgcgccctc ggcgaactga agctgcgcga cctggacaag accgcccagc tcgaaggcaa
     1201 cctgtccctg gcccagttca acctgcgcga gttcctcgac ggcctgggct tcgccctgcc
     1261 ggccatgagc gacaagagca cgctggaacg cttcgagatg tccgcccgcc tggccggcac
     1321 gccgaacagc gtcaccctca gcgacctcgc cctgaagctg gacgacagca ccttcagcgg
     1381 caccctggcg gtcagcgact tcgccaagca ggccctgcgc gcgcaactca agggcgacaa
     1441 gctcgacctc gaccgttatc tgccgccgca gaaccaggaa gacggcgcca gcgcggcgcg
     1501 caagagcgag gtcaaacagg tcgccgctgc agccggcgcg agcggcacca cgccgctgcc
     1561 cagcgcaccg actcagcagg cctggagcag cgagccgctg ctgccgctgg aaaccctgcg
     1621 caagctggat atcgaggccg gcatcggcct cggcgagctg accctgagca agctgccgat
     1681 cgaggacgca cgcatcgcgc tgaccgccaa gggcggcctg atcgacctca aggagctgcg
     1741 cggcggcctg cacggtggcg agttcgccgt gcgctcgcgg ctcgacgcgc gcccggccgt
     1801 gccggtgctg accgccaaca agcagctcaa gcgcatcccg gtcgagaagc tgatcgaggc
     1861 ccgcggcgag aaggcgccgg tgcgcggcga gctcgacctc agcgccgacg tgcgcaccca
     1921 gggcaacagc gagaaggcct ggatcgacgc gctgaacggc accgccagtt tcagcctgag
     1981 cgacggcgtg ctggtcgacg ccaacctgga acagcagctg tgccagggca tcgccaccct
     2041 caaccgcaag tcgctgtccg gcgagccacg cggcaaggac acgcccttcg aggagctgca
     2101 cggcagcctg aagttcacca acggcgtggc cagcaacccc gacctcaagg cgcgcatccc
     2161 cggcctgacg gtgaacggca acggcgacct cgacctgcgc gtgctgggcg tggactaccg
     2221 cgtcgggatc gtcatcgaag gcgacaagag cgccatgccg gacccggcct gccaggtcaa
     2281 cgagcgctat gtcggcctgg aatggccgct gcgctgccgc ggcccgctgg agctgggcgc
     2341 caaggcctgc cgcctggaca aggacggcct cggcaagatc gccgccaagc tggccggcga
     2401 caagctcaac gagaagctgg aagagaagct cggcgacaag gtcagcccgg aactcaagga
     2461 cgcgctgaag ggcctgttca accgatgagc cccgagcagt tcaatggcgc cgtgctggcc
     2521 tggtatgaca tccacggccg caaggacctg ccctggcaac agggcatcac cccgtaccgg
     2581 gtgtgggtct ccgagatcat gttgcagcag acccaggtcg gcaccgtgct cggctatttc
     2641 gaccgcttca tggaggcgct gccgaccgtc caggccctgg ccgaggcgcc cgaggacgag
     2701 gtgctgcacc tgtggaccgg cctcggctac tacacccgcg cacgcaacct gcacaaggcg
     2761 gcgaagctgg tcgtggagcg gcatggcggc gagttcccgc gctcggtcga gcagctcgcc
     2821 gagctacccg gcatcggccg ctccaccgcc ggcgccatcg ccagcctgag catgggcctg
     2881 cgcgcgccga tcctcgacgg caacgtcaaa cgcgtgctgg cccgctacaa ggcccagcac
     2941 ggctacccgg gcgagcccaa agtggcggac cagctgtggc aactggcgga acagctgacc
     3001 ccgcatgcgc gagtcaacca ctacacccag gcgatgatgg acctcggcgc caccctgtgc
     3061 acccgcagca agccgagctg cctgctgtgc ccggtgcgct acggctgccg tgcccatctg
     3121 ctcggccgcg agaccgattt ccccgagtcc aagccgcgca aggcgctgcc gcagaagcgc
     3181 acgctgatgc cgctgctggc caaccgcgaa ggcgccatcc tgctctaccg ccgtccctcc
     3241 agcggcctgt ggggcggcct gtggagcctg ccggagctgg acgacatcgg cgccctcgac
     3301 ccgctggcca gccagcacgc cttgcacgtg ggcgagcgcc gcgaactggc cgggctgacc
     3361 catactttca gccacttcca gctggccatc gagccctggc tggtgcgcgt cgagcaggcc
     3421 agtcccgccg tggccgcggg cgactggctc tggtataacc tcgccagccc gccgcgcctg
     3481 ggcctggccg caccggtgaa gaagctgctc aagcgcgccg aggaagcatt gaatgcagga
     3541 gaagactcat gagccgcacc atccactgcc gcaagttcaa cgaggacctg cccggcctcg
     3601 accgcccgcc ctaccccggc gccaagggcc aggacatcta cgacaacgtg tcgaagaagg
     3661 cctgggacga gtggcaggcg caccagacca tgctgatcaa cgagcgccgg ctgaacatga
     3721 tgaacgccga ggaccgcaag ttcctccagg ccgagatgga caagttcctc tccggcgagg
     3781 actacgccaa ggccgacggc tacgtaccgc cgagcgcctg aggcggtcgc gggcggagcg
     3841 gcgaatttcg taaccgcccg tccgcactgc aatttttttc ctgggcgcgc ttgacactgc
     3901 aaatccaaat ccgtttaatg gcgccccgtt gcccaggtag ctcagtcggt agagcagggg
     3961 attgaaaatc cccgtgtcgg cggttcgatt ccgtccctgg gcaccactaa taccgagaac
     4021 cccgagagaa gcgattcctc ggggtttttg ctatctgcgg cgcaggaacg cgtcgcgctt
     4081 cggcgagtgg agcccagatg gaattcatcc agcttgtcat cgacttcatc ctgcacatcg
     4141 accgccatct ggcggagctg accgccgcct acgggccgtg gatctacgcc atcctgttcc
     4201 tgatcatctt ctgcgagacc ggcctggtgg tgacgccttt cctgcccggc gactcgctgc
     4261 tgttcgtcgc cggcgccatc gccacccagg acgcgatgaa cgtgcacatc atggtcgtgc
     4321 tgctgatcat cgccgcgatc ctcggcgacg cggtgaacta cagcatcggc cgtttcttcg
     4381 gcaccaggct gttcgccaac ccggactcga agatcttccg tcgccgctac ctggaggtga
     4441 ccgaggcctt ctacgccaag cacggcggca agaccatcat cctcgcccgc ttcgtgccca
     4501 tcgtgcgcac cttcgccccc ttcgtcgccg gcatgggcca catgccctac cgccgcttcg
     4561 ccctctacaa cgtgatcggc gccgtcacct gggtgaccct gttcagctac gccggctact
     4621 tcttcggcaa cctgccggtg gtgcagagca acctgcacta cctgatcgtg gcgatcatct
     4681 tcgtgtcgat cctgccgggg gtgatcgaga tcatccgcca tcgccgggcc gccgcgcgct
     4741 cgcagtaagc cggccggcac gacggacgca ccgcccgtca tctggtggcc ccacgccacc
     4801 agtgcaatac tctccgccag cgtcgtgtcg gcgcgccgcc gagggtaatc agtgatgaca
     4861 gccagcttta cggtgggaca cagcccacgc ttcgccgagt ccggcctcta cgcccggctc
     4921 gcccaggccg gtgtggacct gcgcagcctg acccgcgccg atgaagcgca gcccggcgcc
     4981 ctcgaagtgc tgctgctcga tgccgggctg ttgagcgcca gtccgctgga agactggcag
     5041 gcctgcggtg ccagcctggt cgccttcgag gcacccgcgg gcgtactgcc cctgccggcc
     5101 gccgccagcg aggacgaact gatcgccctg ctcggcttcg ccgccgagca gttccgtctc
     5161 aggcagaaga ccgatcagct ggccgccgcc ctgcacagca aggacggcga cctgcagaag
     5221 ctggtcgacg tcggcctggc gctgtccgcc gagaaggatc tggaacggct gctgagcaag
     5281 atcctcaccg agggccggcg cctgtccaac agcgacgccg cctcgctgtt tctggtggac
     5341 aacaagggcg agcagccgca gctgctgttc aagctgaccc agaacgcctc gataccgacc
     5401 cgcttccagg aacagcgcat gccgctgacc gaggcgtcga tcgccggcta cgtggcgctg
     5461 accagcaccg agctgaacat cgccgacgcc tacgccattc ccgccgaggc gccctaccgt
     5521 ttcaaccgct cgttcgacct gcaggtgggc taccgcaccc tgtcgctgct ggccatcccc
     5581 atgctcaacc accgccatga ggtggtcggt gtgctggaat tcatcaattg ccagagcgcc
     5641 ggcggcgagc cgatcgcctt cgacgaggtg atggccgcct cgctgcgcgc actggcca
//
LOCUS       DATIHC010000131         1796 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11997, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000131 DATIHC010000000
VERSION     DATIHC010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1796
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11997"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..331)
                     /locus_tag="VLF16_02140"
     CDS             complement(<1..331)
                     /locus_tag="VLF16_02140"
                     /inference="COORDINATES: protein motif:HMM:NF015083.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxidase family protein"
                     /protein_id="HSX69705.1"
                     /translation="MSVWVTWPSLVKFGTLGIYAGLITLALERDVLFKNNLFDVDNLP
                     AANANITCDARSQVARTEDGTCNILSNPAEGSVFRRFGRNVDPAVTHGETESDTLLSP
                     NPREVSNV"
     gene            complement(466..>1796)
                     /locus_tag="VLF16_02145"
     CDS             complement(466..>1796)
                     /locus_tag="VLF16_02145"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HSX69706.1"
                     /translation="GRPGMDEPTRQLLVLNLELFQHDLAFDPGERWSDLLAPGISTDV
                     RALAMTILAYHHLMNGRLDQSIQLALEAKTLLARTGQLFLESYADLIIALCNRNAGRA
                     TSARKDVCQDYQRTERSSPAWVNRATAMVVALYEQNQLGAAQQLCEDLMAMVTSSSAT
                     ETIATVHITLSRLLYRRQSQGRAGRLLEQLSRILQLGNYARFASQVAQESMRQAYLDG
                     RPAALDVLAQRLGIEERLAGGEWERVRPYDECWERYGLAAVYWLVMRGAQPRACRILK
                     VLAQSLQQSEMKARALVVEANLLVQSAPQQSEDQQIKALLALVERFGIVNINRSVFDE
                     APGFAEAVFGLLRSGQLQVPEAYRDAYAEFLLAESKAPAAALPDLVSLLTDKEAEIFA
                     CLLKGLSNTEISASTGIALSTTKWHLKNIYSKLNLSGRTEAILAMQQRGA"
BASE COUNT          297 a          574 c          619 g          306 t
ORIGIN      
        1 gcacgttact cacctcccgc gggttgggac tgagcagcgt gtcggactcg gtttcgccgt
       61 gggtcaccgc ggggtcgacg ttgcgaccaa agcggcggaa gacggagcct tcggcggggt
      121 tggacagaat gttacaggta ccgtcttcgg tacgagccac ctgactgcgt gcgtcacagg
      181 tgatgttggc gttggccgca ggcaggttgt cgacgtcgaa caggttgttc ttgaacagca
      241 catcgcgctc gagcgcgagt gtgatcaggc cggcataaat gcccagggtg ccgaatttga
      301 ccaagctcgg ccaggtgacc cacacagaca tggcgttatc tcccggaatt attcttgtac
      361 taatacggtt gggccggagg atccggctgc cgggagatta gggattcgcc agcccccctc
      421 ccccctcccg caggaggggg aagcgggaat cgggcgtacc gccggtcagg cgccgcgctg
      481 ctgcatggcg aggatggcct cggtgcgccc cgagaggttg agcttcgagt agatgttctt
      541 caggtgccac ttggtagtgg acagggcgat gccggtacta gcgctgatct cggtgttgga
      601 caggcccttg agcaggcagg cgaagatctc cgcctccttg tcggtgagca ggctgaccag
      661 gtccggcagc gcggctgccg gcgccttgct ctcggccagg agaaactcgg cgtaggcgtc
      721 gcgataggcc tccggcacct gtagttggcc cgagcgcagc aggccgaaca cggcctctgc
      781 gaagccgggc gcctcgtcga acaccgagcg gttgatatta acgatgccga agcgctcgac
      841 cagcgcgagc agcgccttga tctgctgatc ctcgctctgc tgcggcgcgc tctgcaccag
      901 caggttggcc tccaccacca gcgcccgcgc cttcatctcg ctctgctgca gcgactgcgc
      961 caggaccttg aggatgcggc aggcgcgcgg ctgggcaccg cgcatcacca gccaatagac
     1021 ggcggcgagg ccatagcgct cccagcattc gtcgtagggc cggacccgct cccactcccc
     1081 ccccgccagg cgctcttcga tgcccaggcg ctgggccagc acatccagag ccgccggacg
     1141 gccgtcgaga taggcctggc gcatgctctc ctgcgccacc tggctggcga agcgcgcgta
     1201 gttgccgagc tgcaggatgc gcgacaactg ctccaacagg cgcccggcgc ggccctgtga
     1261 ctggcgccga taaagcaggc gcgacagggt gatgtgcacg gtggcgatgg tctcggtggc
     1321 cgacgacgag gtgaccatcg ccatcaggtc ctcgcacagc tgctgggcgg cgcccagctg
     1381 gttctgctcg tacagggcca ccaccatcgc ggtggcgcgg ttgacccagg ccggcgagga
     1441 acgctcggtg cgctgatagt cctggcacac atccttgcgc gcgctggtgg cgcggccggc
     1501 gttgcggttg cacagggcga tgatcaggtc cgcatagctt tccaggaaca gctgaccggt
     1561 gcgcgcgagc agcgtcttgg cttccagcgc caattggatc gactgatcca ggcgcccgtt
     1621 catcagatgg tgataggcga ggatggtcat ggccagggca cgtacgtccg tggagatgcc
     1681 gggggccagc aggtcgctcc agcgctcgcc agggtcgaag gccaggtcgt gctggaacaa
     1741 ctcgagattg agcaccagca gctggcgcgt cggctcgtcc atgcccggcc gcccga
//
LOCUS       DATIHC010000132         1549 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35509, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000132 DATIHC010000000
VERSION     DATIHC010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35509"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..94)
                     /locus_tag="VLF16_02150"
     CDS             complement(<1..94)
                     /locus_tag="VLF16_02150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017245660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69707.1"
                     /translation="MSCDFLALAVPGVQKLSPYVPGKPVDELARE"
     gene            complement(121..1218)
                     /gene="pheA"
                     /locus_tag="VLF16_02155"
     CDS             complement(121..1218)
                     /gene="pheA"
                     /locus_tag="VLF16_02155"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HSX69708.1"
                     /translation="MSDADQLKALRVRIDSLDEKILELISERARCAQDVARVKMQSLP
                     EGEKPVFYRPEREAWVLKHIMELNKGPLDNEEMARLFREIMSSCLALEQPLKVAYLGP
                     EGTFSQAAAMKHFGHSVISVPMAAIDEVFREVAAGAVNFGVVPVENSTEGAINHTLDS
                     FLEHDMVICGEVELRIHHHLLVGETTKTDKITRIYSHAQSLAQCRKWLDAHYPNVERV
                     AVSSNADAAKRVKSEWNSAAIAGDMAANLYGLTKLQEKIEDRPDNSTRFLIIGSQEVP
                     PTGDDKTSVIVSMRNKPGALHELLVPFHTNGIDLTRIETRPSRSGKWTYVFFIDFVGH
                     HRDPLIKDVLGKINGEAVALKVLGSYPKAVL"
     gene            complement(1218..>1549)
                     /locus_tag="VLF16_02160"
     CDS             complement(1218..>1549)
                     /locus_tag="VLF16_02160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HSX69709.1"
                     /translation="EWLKEQGGVAAMEQRNRAKKDLLYTFIDGSDFYTNPIQTGSRSW
                     MNVPFRLADEKLDKAFLAGADARGLLNLKGHRSVGGMRASIYNATGLDAVEALVAYMA
                     EFEKERG"
BASE COUNT          245 a          496 c          507 g          301 t
ORIGIN      
        1 gctcacgggc cagctcatcg accggtttgc ccggcacgta gggcgagagt ttctgcacgc
       61 ccggcacggc cagggcgagg aagtcgcagc tcatgagctc tcctcagaca atcacgcggc
      121 tcagagaacc gctttcgggt aggaacccag cactttcagg gcgacggctt cgccgttgat
      181 ctttcccagc acgtccttga tcagcgggtc gcggtggtgg ccgacgaagt cgatgaagaa
      241 cacgtaggtc cacttgccgc tgcgcgacgg gcgggtctcg atgcgggtca ggtcgatgcc
      301 gttggtgtgg aacggcacca gcaactcgtg cagcgcgccc ggcttgttgc gcatggagac
      361 gatgaccgag gtcttgtcgt cgccggtcgg cggcacttcc tggctgccga tgatgaggaa
      421 gcgcgtggag ttgtccggac gatcctcgat cttttcctgc agtttggtca ggccgtagag
      481 attggccgcc atgtcgccgg cgatcgccgc cgaattccac tcgctcttca cccgcttggc
      541 cgcatcggcg ttgctggaaa ccgccacgcg ctcgacgttc gggtagtgcg cgtccagcca
      601 tttgcggcac tgggccaggg actgggcgtg ggaatagatg cgggtgatct tgtcggtttt
      661 ggtggtctcg ccgaccagca ggtggtggtg gatacgcagc tccacctcgc cacagatgac
      721 catgtcgtgc tcgaggaagc tgtccagggt gtggttgatc gcgccctcgg tggagttctc
      781 caccggcacc acgccgaagt tgaccgcacc ggcggccact tcgcggaaca cttcgtcgat
      841 cgcggccatc ggcacgctga tcaccgagtg gccgaaatgc ttcatcgccg ccgcctggct
      901 gaaggtgcct tccgggccga gataggcgac cttgagcggc tgctccagag ccaggcagga
      961 ggacatgatc tcgcggaaca gccgcgccat ctcctcgttg tccagcggcc ccttgttcag
     1021 ctccatgatg tgcttgagca cccaggcttc acgctcggga cggtagaaca ccggcttctc
     1081 gccttccggc agggactgca tcttgacccg cgccacgtcc tgggcgcagc gcgcgcgctc
     1141 gctgatcagc tcgaggatct tttcgtcgag gctgtcgatg cgaacccgca gcgccttcag
     1201 ctgatcggcg tcgctcatca gccgcgctcc ttctcgaact ccgccatgta ggccaccaac
     1261 gcctccacgg cgtccaggcc ggtggcgtta tagatggagg cgcgcatgcc gcccaccgaa
     1321 cgatggccct tgaggttgag caggccgcgc gcatcggcgc cggcgaggaa ggccttgtcg
     1381 agcttctcgt cggccagacg gaatggcacg ttcatccagg agcgcgaacc ggtctggatc
     1441 gggttggtgt agaagtcgct gccgtcgatg aaggtgtaga gcaggtcctt cttcgcgcgg
     1501 ttgcgctgct ccatcgcggc gacgccgccc tgctccttca gccactcga
//
LOCUS       DATIHC010000133         4823 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28356, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000133 DATIHC010000000
VERSION     DATIHC010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4823
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28356"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..890
                     /locus_tag="VLF16_02165"
     CDS             <1..890
                     /locus_tag="VLF16_02165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020290661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF748 domain-containing protein"
                     /protein_id="HSX69710.1"
                     /translation="NGLTIDKVDGDVPVPLLDAPVIDLAVSWHSLWYDHGVVARVLFE
                     RPQINFVDGGDRPEDTQTGAGVDWRQQLEKLLPITLNEIRVVDGQVTFRNFTSQPPVD
                     LQADDVDASLYNLTNVADENGERVARFEGHALLLGHAPLEATAVFDPFENFEDFEFRV
                     RATNIELRRLNDFSSAYGKFDFNAGNGDVVIEANADEGQLSGYIKPLLRDVDVFNWRQ
                     DVQSEDKGFFRSIWEALVGGSETVLKNQQKNQFATRVELSGSVKDQDVSPFQAFLAIL
                     RNGFVQAFNARYENTPPSS"
     gene            complement(880..1080)
                     /locus_tag="VLF16_02170"
     CDS             complement(880..1080)
                     /locus_tag="VLF16_02170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008066445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HSX69711.1"
                     /translation="MHNRLKELRAERGWSQSELAQRLEVSRQSVNAIETGKYDPSLPL
                     AFRIARLFGLPIESIFSDEVTN"
     gene            complement(1090..1479)
                     /locus_tag="VLF16_02175"
     CDS             complement(1090..1479)
                     /locus_tag="VLF16_02175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69712.1"
                     /translation="MNAAARRYVISCSSLMLIYAALVCLISWGVDLQRLPYGLRLVAA
                     ASPALPLLASLYVFDRYMRSEPDEFLRFLMSRAALLAGGSVVGLLSAWGFLEQYAGWP
                     RFPLIMAFPAFWAAYAFTSTLVRWRYA"
     gene            1714..2559
                     /locus_tag="VLF16_02180"
     CDS             1714..2559
                     /locus_tag="VLF16_02180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HSX69713.1"
                     /translation="MKFEGTQSYVATDDLKLAVNAAITLQRPLLVKGEPGTGKTMLAE
                     QLSAAFGAKLITWHIKSTTKAHQGLYEYDAVSRLRDSQLNSDKVHDVRNYIKKGKLWE
                     AFESEERVILLIDEIDKADIEFPNDLLQELDKMEFYVYETDETIKAKQRPIIIITSNN
                     EKELPDAFLRRCFFHYIAFPDRDTLKKIVDVHYPNISGELVAEALDVFFDVRKVPGLK
                     KKPSTSELVDWLKLLMADNIGEAVLRERDPTKAIPPLAGALVKNEQDVQLLERLAFMA
                     RRAGR"
     gene            2622..3014
                     /locus_tag="VLF16_02185"
     CDS             2622..3014
                     /locus_tag="VLF16_02185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016491793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HSX69714.1"
                     /translation="MHDGSCLCGAVKYRIDVPIESASHCHCSQCRKGHGAAFGSYATV
                     PWSSFAWTAGEDSVARYSSSPGVTRTFCRHCGATLQWYSDAHPETVGVTLGTLDTPLG
                     VVPQKHIYTESKAGWYIIADGLPQEPGS"
     gene            3044..4222
                     /locus_tag="VLF16_02190"
     CDS             3044..4222
                     /locus_tag="VLF16_02190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012722828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HSX69715.1"
                     /translation="MLLNLFNEMRAAKVPVSVRELLDLINALKHNVVLADMDEFYYLA
                     RAILVKDERHFDKFDRAFGAYFKGLENLNEHIEALIPEEWLRKEFERHLSEEEKAQIQ
                     SLGGLDKLIEEFKKRLEEQKERHAGGNKWIGTGGTSPFGSGGYNPEGIRVGDAGKRQG
                     KAAKVWDQREYKNLDDQVELGTRNIKVALRRLRKFAREGAAEEFDLGGTIDHTAKDGG
                     LLNIQMRPERRNTVKLLLLFDIGGSMDAHVKVCEELFSACKTEFKHLEYFYFHNFVYE
                     SVWKNNLRRTSERFSTLDLLHKYGPDWKIIFVGDAAMAPYEITQAGGSVEHWNEEAGY
                     VWMKRFMEKYKKLIWINPYPKDAWNYTASTNIVRELINDQMHPLTLRGLEEGMRFLSK
                     "
     gene            4307..>4823
                     /locus_tag="VLF16_02195"
     CDS             4307..>4823
                     /locus_tag="VLF16_02195"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016983036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HSX69716.1"
                     /translation="MHDISLQDAAAPDGVCYGCGSRNPHGLHVKSRWHEDGIHVLAEH
                     LPDPMHCGWPDLVYGGLIAMLVDCHSNWTAMAHHYRVEGREPGSLPRVECVTGHLGIK
                     FIKPTPMGVPLQLRAKIEGEPGRKTRVICEVYADGVLTAVGDSIFVRVDTSQLADAAH
                     GREARSEAGSPA"
BASE COUNT          979 a         1611 c         1522 g          711 t
ORIGIN      
        1 tcaacggcct gaccatcgac aaggtcgacg gcgacgtgcc ggtaccgctg ctggacgcgc
       61 cggtgatcga tctcgcggtc agctggcact cgctgtggta cgaccacggc gtggtggcgc
      121 gggtgctctt cgagcgtccg cagatcaact tcgtcgatgg cggcgaccgc cccgaagaca
      181 cccagaccgg tgccggcgtg gactggcgcc agcagctgga aaagctgctg ccgatcaccc
      241 tcaacgagat ccgcgtggtg gacggccagg tgaccttccg caactttacc tcgcagccgc
      301 cggtggacct gcaggccgac gacgtcgacg ccagcctcta taacctgacc aacgtcgccg
      361 acgagaacgg cgagcgggtg gcgcgcttcg agggtcacgc actgctgctg ggccatgcgc
      421 cgctggaggc cacggcggtg ttcgacccgt tcgagaattt cgaggatttc gaattccgag
      481 tgcgcgccac caatatcgag ctgcgccgcc tcaacgactt ttcctcggcc tacggcaagt
      541 tcgacttcaa cgccggcaac ggcgacgtgg tcatcgaggc caacgccgac gaggggcagc
      601 tcagcggcta catcaagccg ctgctgcgcg atgtcgacgt gttcaactgg cgccaggacg
      661 tgcagagcga ggacaagggc ttcttccgct cgatctggga agccctggtc ggcggcagcg
      721 aaacggtact gaagaaccag cagaagaacc agttcgccac ccgggtcgag ctgtctggca
      781 gcgtcaagga tcaggacgtc agcccgttcc aggccttcct ggcgatcctg cgcaacggct
      841 tcgtccaggc cttcaacgcg cgctacgaga acaccccgcc tagttcgtga cctcgtcgct
      901 gaagatcgac tcgatcggca ggccgaacag ccgggcgatg cggaaggcca gcggcaggct
      961 ggggtcgtac ttgccggtct cgatggcatt gacgctctgc cgcgacacct ccaggcgctg
     1021 ggccagttcc gactgactcc agccgcgctc ggcgcgcaac tcctttaggc gattgtgcat
     1081 ggcgactcct caggcgtagc gccagcgaac cagcgtggag gtgaaggcat aggccgccca
     1141 gaacgccgga aacgccatga tcagcgggaa gcgcggccag ccggcgtact gctcgagaaa
     1201 gccccaggcg ctgagcaggc caaccaccga gccgccggcc agcaatgcgg cgcgggacat
     1261 gaggaagcgc aggaattcgt ccggctcgct gcgcatgtaa cggtcgaaga catagagcga
     1321 ggccagcagc ggcagcgccg gcgaagccgc cgcgaccaga cgcaggccat acggcaggcg
     1381 ctgcaggtcg acgccccagc tgatcaggca gaccagcgcg gcgtagatca gcatcagcga
     1441 ggaacaggaa atcacgtagc gacgagcagc ggcattcatg gcgagactcc agacaaaatg
     1501 taaagcaaac ttaacatcgc gcgaatcgcg atgtaaagcg tgcttgtcat tcaaaacgaa
     1561 tccgcaaccg ttcgggccat gacccgccat tcagtgactg aatgccgcgt ctgcgttcac
     1621 agtccaccgc cacgcgcgtt atagtcgagc cctacgtcac cccaaccgaa ccagccggaa
     1681 gcgctacgcg cgcgcccgtt cgaggattcc cagatgaagt tcgaaggcac ccagtcctac
     1741 gtcgccaccg acgacctcaa gctcgcggtc aacgccgcca tcaccctgca gcgcccgctg
     1801 ctggtcaagg gcgagccggg taccggcaag accatgctgg ccgagcaact ctccgccgcc
     1861 ttcggcgcca agctgatcac ctggcacatc aagtccacca ccaaggcgca ccagggcctg
     1921 tacgagtacg acgcggtcag ccgcctgcgc gactcgcagc tgaattccga caaggtccac
     1981 gacgtccgca actacatcaa gaagggcaag ctgtgggagg cgttcgagtc cgaggaacgc
     2041 gtgatcctgc tgatcgacga gatcgacaag gccgacatcg agttccccaa cgacctgctg
     2101 caggaactcg acaagatgga gttctacgtt tacgagaccg acgagacgat caaggccaag
     2161 cagcgcccga tcatcatcat cacctcgaac aacgagaagg aactgccgga cgccttcctg
     2221 cgccgctgct tctttcacta catcgccttc ccggatcgcg acaccctgaa gaagatcgtc
     2281 gacgtgcact acccgaacat cagcggcgag ctggtggccg aggcactgga cgtgttcttc
     2341 gacgtgcgca aggtgccagg cctgaagaag aagccctcca ccagcgagct ggtcgactgg
     2401 ctgaagctgc tgatggccga caacatcggc gaagccgtgc tgcgcgagcg cgatccgacc
     2461 aaggccatcc cgccgctggc cggcgctttg gtgaagaacg agcaggacgt gcagctgctc
     2521 gagcgcctgg ccttcatggc gcgtcgcgcc ggacgctgat gccctccccc gctcgcgggg
     2581 gccgggtaag agggtaagcc accaccgagg agacccgagc catgcatgac ggcagctgcc
     2641 tgtgcggcgc agtgaaatac cggatcgatg tgcccatcga atcagccagc cactgccatt
     2701 gcagccagtg ccgcaagggc cacggggcgg cgttcggcag ctatgccacg gtgccctgga
     2761 gcagcttcgc ctggaccgcg ggggaagact cggtagcgcg ctacagctcg tcgcccgggg
     2821 tgacccggac cttctgccgg cactgcggcg ccaccctgca gtggtacagc gacgcccacc
     2881 cggagacggt cggcgtcacc ctcggcacgc tggacacgcc gctgggcgtg gtgccgcaga
     2941 agcacatcta caccgaatcc aaggccggct ggtacatcat cgccgacggc ctgccccagg
     3001 agcccggctc ctgaggccct actgaccaca cgaggctgca gccatgctgc tcaacctgtt
     3061 caacgaaatg cgcgcggcca aggtgccggt gtcggtgcgc gagctgctcg acctgatcaa
     3121 tgcgctcaag cacaacgtcg tgctcgccga catggacgag ttctactacc tcgcccgggc
     3181 gatcctggtg aaggacgagc gccacttcga caagttcgac cgtgccttcg gcgcctactt
     3241 caagggcctg gagaatctca acgagcacat cgaggcgctg atccccgagg agtggctgcg
     3301 caaggagttc gagcgccatc tctccgagga ggagaaggcg cagatccaga gcctgggcgg
     3361 cctggacaag ctgatcgagg agttcaagaa gcgcctcgaa gagcagaagg agcgccacgc
     3421 cggcggcaac aagtggatcg gcacgggcgg caccagcccg ttcggctccg gcggctacaa
     3481 cccggaaggc atccgtgtcg gcgacgccgg caagcgccag ggcaaggcgg ccaaggtgtg
     3541 ggaccagcgc gagtacaaga acctcgacga tcaggtcgag ctgggcaccc gcaacatcaa
     3601 ggtggccctg cgtcgcctgc gcaagttcgc ccgcgaaggc gccgcggagg aattcgacct
     3661 cgggggcacc atcgaccaca cggccaagga cggcggcctg ctcaacatcc agatgcgccc
     3721 ggagcgccgc aacacggtca agctgctcct gttgttcgac atcggcggct cgatggacgc
     3781 gcacgtcaag gtctgcgagg agctgttctc ggcgtgcaag accgagttca agcacctgga
     3841 gtacttctac ttccacaact tcgtctacga gagcgtgtgg aagaacaacc tgcgccgcac
     3901 cagcgagcgc ttctccaccc tcgacctgct gcataagtac ggcccggact ggaagatcat
     3961 cttcgtcggc gacgccgcca tggcgcccta cgagatcacc caggccggcg gtagcgtcga
     4021 gcactggaac gaggaagccg gctacgtctg gatgaagcgc ttcatggaga agtacaagaa
     4081 gctcatctgg atcaacccct accccaagga cgcctggaac tacacggcct ccaccaacat
     4141 cgtccgcgag ctaatcaacg atcagatgca cccgctgacg ctgcgggggc tggaggaagg
     4201 gatgcggttc ctctccaagt aacacgcgaa cgggccctcg ggcccgttct gctttcaggg
     4261 caaagccgtt aggcttggcc cgtcatccct tcgcaacgag tcgaacatgc acgacatttc
     4321 cctgcaggac gccgccgcac ccgatggcgt ctgctacggc tgcggcagcc gcaatccgca
     4381 cggcctgcac gtcaagagcc gctggcacga ggacggcatc cacgtcctcg ccgaacacct
     4441 gcccgacccc atgcactgcg gctggccgga cctggtctac ggcgggctga tcgccatgct
     4501 ggtggactgc cactcgaact ggaccgccat ggcccatcac taccgcgtcg aaggtcgcga
     4561 gccgggcagc ttgccgcgcg tcgaatgcgt caccggccac ctcggcatca agttcatcaa
     4621 gccaacgccc atgggtgtgc cgctgcagct gcgcgcgaag atcgagggcg agccgggccg
     4681 caagacgcgg gtgatctgcg aggtgtatgc cgacggggtg ctgaccgcgg tcggcgactc
     4741 gatcttcgtg cgggtcgaca ccagccagct ggccgacgcg gcgcatggtc gcgaagcacg
     4801 cagcgaggcc ggcagcccgg cat
//
LOCUS       DATIHC010000134         2589 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5134, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000134 DATIHC010000000
VERSION     DATIHC010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2589)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2589
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5134"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            276..863
                     /locus_tag="VLF16_02200"
     CDS             276..863
                     /locus_tag="VLF16_02200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007973847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajG family lipoprotein"
                     /protein_id="HSX69717.1"
                     /translation="MKKHLLFGLLAAFGVALVGCAHSPQQLRPQPKLTASLTPVGQGQ
                     PVVVRVVDGRQSPVLGTRGGLYPETSNISVEGKDVLPRLQAEAEAAVRLLGFTPSPNA
                     YNAPQLTLTLADLKYQSPKEGTYVTEADISASIRAEVQNSSRRYTGRYGASLNQRFGM
                     APNQETNTKLVSDVLSDALTRAFKDPTIGQMLGQQ"
     gene            complement(915..1121)
                     /locus_tag="VLF16_02205"
     CDS             complement(915..1121)
                     /locus_tag="VLF16_02205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005891226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69718.1"
                     /translation="MLNPQPLDRDYLIDSLDEVEAVIDELSFNVQDYHWLVYCAMGGH
                     EHYDLPDVDDRTGFSLPELYAEAA"
     gene            1451..1729
                     /locus_tag="VLF16_02210"
     CDS             1451..1729
                     /locus_tag="VLF16_02210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003146038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69719.1"
                     /translation="MSLQYLWNLFSNHSPQVINGLALFFALAGSWLLLATRLREQRAS
                     ARLVADAELDAEASLLDERTQRINRFFYGFGAITLAAALLLSWFSTGL"
     gene            complement(1792..>2589)
                     /locus_tag="VLF16_02215"
     CDS             complement(1792..>2589)
                     /locus_tag="VLF16_02215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005784885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol acyltransferase"
                     /protein_id="HSX69720.1"
                     /translation="FHAELPTPRIAIGDNLLQRPFVSDLMRLNKSFIVHRNVAGRREK
                     LAAFQLLSAYINHSIREEGQSIWIAQAEGRAKDGDDRTDSAILKMFHMSRKDEPFAEA
                     LASLNLVPVSISYEYDPCDLAKARELQIRASTGSYEKAPGEDDASIALGITGYKGRVH
                     VHFGEPVREGFEDAKQLAALMDRHILGGYRLFPVHLLAYAQWDERDPELQVPNAEQLF
                     PAAEVAAARTEWQRRLDACPAEQRPWLIRQYATPVRNQYRVKADLPL"
BASE COUNT          412 a          871 c          851 g          455 t
ORIGIN      
        1 accctgctcg gccggcgctt cacggcattc gcgcagggcg cggcaggtgc ctttggcatc
       61 cagcagggcg aagcggcgca tccgggcgcg cggggtgaac agggaccaca gactcatcat
      121 tgcaacatcc tccagggtcc gagccttatc gcatgccggg gtgacagggt gatgacagga
      181 accgcccccg tggcgacagg gtcagaacaa ggacactgag cggagcgctg ggtatactgc
      241 cggccttccg cagtcacgct ttcggagatc gccccatgaa gaaacacctg ctgttcggtc
      301 tgctagccgc gttcggcgtt gccctggtcg gctgcgccca cagcccgcaa cagttgcgcc
      361 cgcagcccaa gctcaccgcc tcgctgaccc cggtcggcca gggtcagccg gtggtggtgc
      421 gcgtggtgga cggccgccag tcgccggtgc tcggcacccg cggcggtctc tatccggaga
      481 ccagcaacat cagcgtcgag ggcaaggacg tcctgccgcg cctgcaggcc gaggccgagg
      541 cggcggtacg cctgctcggc ttcactccga gcccgaacgc ctacaacgcc ccgcagctga
      601 ccctgaccct ggccgacctg aagtatcagt cgcccaagga aggcacctac gtcaccgagg
      661 ccgacatcag cgccagcatc cgtgccgaag tgcagaacag ctcgcgccgc tacaccggcc
      721 gctatggcgc ctcgctgaac cagcgcttcg gcatggcgcc gaaccaggag accaacacca
      781 agctggtttc cgacgtgctg agcgatgccc tgacccgcgc cttcaaggac ccgaccatcg
      841 gccagatgct cggccagcag taagcgctgc aggcaagaaa aagcccggca tcgccgggct
      901 ttttcgttgc gggctcacgc cgcttcggcg tagagctccg gcaggctgaa cccggtacgg
      961 tcgtcgacgt cgggcaggtc gtagtgttcg tggcctccca tcgcgcagta caccagccag
     1021 tggtagtcct gcacgttgaa ggacagctcg tctatcacgg cctcgacctc gtccagcgag
     1081 tcgatcaggt agtcacgatc caggggttgc gggttgagca tggcggttcc tccgcgggtg
     1141 gaatgaagct ccgtcactgc gagtgactgg cgagtcactc aaggagaatc aaaccctagg
     1201 ccaggaaaat gaccgcgttt atacagattc gtgattactg cgcgacgttc gtcggaaggg
     1261 aattcataac ccggagcttt tcagtagact gccgcccgcc atcggccggc cgccccggcg
     1321 ccgccgcccg attctggtgc gcaggcaagc gccccggcgc tccttagttc gcgcgcttat
     1381 gagcccgcgc ctggcattgg tgccgtcttt tcccgttgtt ggtgcagccc tggctgccga
     1441 ggtgattcgc gtgtccctgc agtacctctg gaacctgttc tccaaccact ccccgcaagt
     1501 aatcaacggc ctggcgctgt tcttcgccct cgccggcagc tggctgctac tcgccacccg
     1561 tctgcgcgaa caacgcgcca gcgcgcgcct ggtcgccgat gccgagctgg acgccgaggc
     1621 cagcctgctg gacgagcgca cccagcgtat caaccgcttc ttctatggtt tcggtgcgat
     1681 caccctggcc gccgcgctgc tgttgtcctg gttcagcacc ggtctctgac ggcgcttcgg
     1741 gcacaaacaa aaacggcagc cctgggctgc cgttttgcat ttcagccacc ctcagagcgg
     1801 caggtcggcc ttgacccggt actggttgcg caccggcgtg gcgtactggc ggatcagcca
     1861 ggggcgttgc tcggcggggc aggcgtccag gcggcgctgc cactcggtgc gggcggcggc
     1921 gacttcggcg gcggggaaca gctgctcggc gttcggtacc tgcagctcgg ggtcgcgctc
     1981 gtcccactgg gcgtaggcca gcaggtgcac cgggaacaat cggtagccgc cgaggatgtg
     2041 ccggtccatc agcgccgcca gctgcttggc gtcttcgaag ccctcgcgca ccggctcgcc
     2101 gaagtgcacg tgcacgcggc ccttgtagcc ggtgatgccc agggcgatgc tggcgtcgtc
     2161 ttcgcccggt gccttctcgt agctgccggt gctggcgcgg atctgcagtt cgcgggcctt
     2221 ggccaggtcg caggggtcgt actcgtagct gatcgacacc ggtaccagat tcagcgacgc
     2281 cagagcctcg gcgaagggct cgtccttgcg gctcatgtgg aacatcttga ggatcgccga
     2341 gtcggtgcgg tcgtcgccgt ccttggcccg gccctcggcc tgggcgatcc agatcgattg
     2401 gccttcctcg cggatcgagt ggttgatgta ggccgacagc agctggaacg ccgccagctt
     2461 ctcgcgccgc ccggcgacgt tgcggtgcac gatgaaactc ttgttcaggc gcatcaggtc
     2521 gctgacgaag gggcgctgca acaggttgtc gccgatggcg atgcgcgggg tcggcagctc
     2581 ggcatggaa
//
LOCUS       DATIHC010000135         1838 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_23517, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000135 DATIHC010000000
VERSION     DATIHC010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1838)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23517"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..609)
                     /gene="ilvC"
                     /locus_tag="VLF16_02220"
     CDS             complement(<1..609)
                     /gene="ilvC"
                     /locus_tag="VLF16_02220"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HSX69721.1"
                     /translation="MKVFYDKDCDLSIIQGKKVAVIGYGSQGHAQACNLKDSGVDVTI
                     GLRKGSATVAKAEAHGLKVTDVATAVANADLVMILTPDEFQGRLYKEEIEPNIKKGAT
                     LAFSHGFSIHYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNA
                     KNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGIT"
     gene            735..1616
                     /gene="ilvY"
                     /locus_tag="VLF16_02225"
     CDS             735..1616
                     /gene="ilvY"
                     /locus_tag="VLF16_02225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator IlvY"
                     /protein_id="HSX69722.1"
                     /translation="MDSHALRLFLSLADNLHFGKTSREQHVSPSALSRSIKQLEDELG
                     APLFLRDNRSVRLTREGQQFREYAQEVMNGWQAIRQTFQQDQLILHGELSLYCSVTAS
                     YSFLYDILSSFRQNYPRIEMKLHTGDPAKAVERVQQGLEDLAIGARPDNLPADVAFQP
                     IARSELRFIGPQSPQLLNEEQLKQPDAESWRDVPMILSEEGLARTRTDRWLKSHDIKP
                     RIYAQVSGNEAIVSMVSLGFGIGVVPQIVLDNSPLTARIRIYDIQPPLTAYDIGLFAL
                     QKRLKDPLIAAFWNRQQ"
     gene            complement(1659..>1838)
                     /gene="ilvH"
                     /locus_tag="VLF16_02230"
     CDS             complement(1659..>1838)
                     /gene="ilvH"
                     /locus_tag="VLF16_02230"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253383.1"
                     /note="with IlvI catalyzes the formation of 2-acetolactate
                     from pyruvate, the small subunit is required for full
                     activity and valine sensitivity; E.coli produces 3
                     isoenzymes of acetolactate synthase which differ in
                     specificity to substrates, valine sensitivity and affinity
                     for cofactors; also known as acetolactate synthase 3 small
                     subunit; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HSX69723.1"
                     /translation="TDIFRGQIVDVTSSVYTIQLAGTSDKLDSFIQAIGTASILETVR
                     SGVTGIARGDKVLSV"
BASE COUNT          360 a          560 c          561 g          357 t
ORIGIN      
        1 ggtgatcccc ccgcagagaa cggcctgctc gccgaacagg tcggtttcgg tctcgtcctt
       61 aaaggtggtt tcgatgatgc cggtacgacc gccgccgacg ccgcaggcgt aggacagggc
      121 gacgttcttg gcgttgccgg aagcgtcctg gtagatggcg atcaggtcag ggatgccgcc
      181 acccttgacg aactcggagc gcacggtgtg gcccggggct ttcggcgcga tcatgatcac
      241 gtcgagatcg gcacgcggaa cgacttggtt gtagtggatg gagaagccgt gggagaaggc
      301 cagggtggcg cccttcttga tgttcggctc gatctcttcc ttgtacaggc ggccctggaa
      361 ctcgtccggg gtcaggatca tgaccagatc ggcgttggca acggcggtgg ccacgtcggt
      421 gactttcagg ccatgggctt cggccttggc aacggtagcg gagcccttgc gcagaccgat
      481 ggtgacgtcg acgccggaat ccttcaggtt gcacgcctga gcgtggccct gagagccgta
      541 gccgatcacg gcgactttct tgccttggat gatggagagg tcgcagtctt tgtcgtagaa
      601 aactttcatg gtcgtggctc ttctggatcg aatggagtgg gtgctcagca ccgctacgga
      661 ggcaccttaa gcgatcctct ccattgcgta aaatgatata tttgcaatac aacgtgccga
      721 tatatgaaac gaatatggat agccacgcac tcaggctttt tctttctttg gcggataacc
      781 tgcacttcgg caaaaccagc cgcgaacagc acgtcagtcc ttccgcgctc agccgcagca
      841 tcaagcagct cgaagatgag ctgggcgccc cgctgtttct acgcgacaac cgttcggtcc
      901 gtctgacccg tgagggacaa cagtttcgcg aatatgccca agaggtcatg aatggctggc
      961 aggccatccg ccagaccttc cagcaggatc agttgatcct gcatggcgag ctttcccttt
     1021 attgctcggt cacggccagc tacagcttcc tgtacgacat cctcagcagc ttccgccaga
     1081 actacccgcg catcgagatg aagctgcata ccggcgaccc ggccaaggcc gtcgagcggg
     1141 ttcagcaggg gctggaagac ctcgccatcg gcgctcgccc ggacaacctc ccggcagatg
     1201 ttgccttcca gcccatcgcc cgctccgagc tgcgcttcat cggcccacag tcaccccagt
     1261 tgctcaatga ggagcaattg aagcagccgg atgcggaaag ctggcgagac gtgccgatga
     1321 tcctctcgga agagggactc gcacggacac gcaccgaccg ctggctgaaa agccacgaca
     1381 taaagccgcg catctacgcc caggtgagcg gcaacgaggc catcgtcagc atggtgagcc
     1441 tgggcttcgg catcggcgtg gtgccgcaga tcgtgctgga caacagccca ctgaccgcgc
     1501 gcattcgcat ctacgacatc cagccaccac tgaccgccta cgacatcggc ctgttcgccc
     1561 tgcagaagcg cctcaaggac ccgctgatcg ctgccttctg gaatcgccag caataaaaag
     1621 ccccgcactg ggcggggctt ttgcgacacg gcgctggatc agacgctcaa gaccttgtca
     1681 ccgcgcgcaa tgccggtgac gccactgcgc acggtttcca ggatcgatgc ggtgccgatg
     1741 gcctggatga agctgtccag cttatcgctg gtaccggcca gctggatggt gtagacgctg
     1801 ctggtgacgt cgacgatctg cccgcggaag atgtcggt
//
LOCUS       DATIHC010000136         2037 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33063, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000136 DATIHC010000000
VERSION     DATIHC010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2037)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2037)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2037
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33063"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            136..630
                     /locus_tag="VLF16_02235"
     CDS             136..630
                     /locus_tag="VLF16_02235"
                     /inference="COORDINATES: protein motif:HMM:NF018435.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HSX69724.1"
                     /translation="MLDQFTPLLYLKLRSDSISGLHLPSGRTFDEPPVLALQTLKGKR
                     EAIAVGHAAAKLRGQAHIEVVNGFEHPRSLLADFAVAEKTLQLLFRQLPPKSLLKLAP
                     RVILHPLEHLQGGLTLVEIRGLYELCRGAGARHVQLWVGRELTTEELRSRQFPSDGGS
                     LLTP"
     gene            complement(635..1729)
                     /gene="apbC"
                     /locus_tag="VLF16_02240"
     CDS             complement(635..1729)
                     /gene="apbC"
                     /locus_tag="VLF16_02240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008433518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HSX69725.1"
                     /translation="MSAVTREAVEARLRQFTDPHLNQDPVSAGCLREIDIQGGKVAVR
                     LELGYAAGLFRNGWAQMLQMALEGLDGVESARVQVDVAIAPHKAQEQVPALAGVKNII
                     AVASGKGGVGKSTTAANLALALAREGARVGILDADIYGPSQGIMFGIAEGTRPKVRDQ
                     KFFVPLEAHGVQVMSMAFLTDDNTPVVWRGPMVSGALLQLVTQTAWDDLDYLIVDMPP
                     GTGDIQLTLAQKVPVAGAVIVTTPQDLALLDARKGVEMFRKVNIPVLGVVENMAVHIC
                     SNCGHAEHLFGEGGGEKLAAQYGVDLLASLPLSMAIRMQADGGKPTVVADTESQIAMI
                     YQEMARSVGARIAQGGLGSGAMPTIEVSDD"
     gene            1933..>2037
                     /locus_tag="VLF16_02245"
     CDS             1933..>2037
                     /locus_tag="VLF16_02245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HSX69726.1"
                     /translation="MSEARKILVTSALPYANGSIHLGHMLEYIQTDMWV"
BASE COUNT          342 a          708 c          654 g          333 t
ORIGIN      
        1 gaagctgttg gctgaaaaat gatcgcgcat cttaccgggg gccagggcac cgagccaagg
       61 ggcgtcgggc aggtcgacgg cgtgacgcgc cgccgctagg ctgggcgtct tttatcgcct
      121 ggaacggata ccggcatgct cgaccagttc acgcccctgc tctatctcaa gctcagatcg
      181 gacagcatca gcggcctgca cctgccatcc ggcaggactt tcgacgaacc acccgtcctg
      241 gccctgcaga ccctcaaggg caagcgcgag gccatcgctg tcggccatgc ggcggccaag
      301 ttgcgaggac aagcccacat tgaagtagtc aatggtttcg agcacccgcg ctcgctgctg
      361 gccgacttcg ccgtcgcgga gaaaacactc cagctgctgt tccgccagct accgccaaag
      421 tcgctgttga agctggcgcc cagagtcatt ctgcacccgc tggagcatct gcaaggcggc
      481 ctgacactgg tggaaatccg aggcctgtac gaactgtgcc gaggtgcggg tgccaggcac
      541 gttcagttgt gggtcggccg cgaactgacc accgaggaac tgcgctcgcg gcagttcccc
      601 tccgacggcg gctcgctgct gacgccctga ggcgtcagtc gtcgctgacc tcaatggtcg
      661 gcatcgcgcc gctgcccagg ccgccctggg cgatgcgcgc gccgacgctg cgggccattt
      721 cctggtagat catggcgatc tggctctcgg tgtcggccac cacggtcggc ttgccgccgt
      781 cggcctgcat gcggatggcc atggacagcg gcagcgaggc gagcaggtcg acgccgtact
      841 gggccgccag cttctcgccg cccccctcgc cgaacaggtg ctcggcatga ccgcagttgc
      901 tgcagatgtg cacggccatg ttctccacca cgcccagcac cgggatgttg accttgcgga
      961 acatctccac gcccttcctg gcgtccagca gggccaggtc ctgcggggtg gtgacgatca
     1021 ccgcgccggc caccggcacc ttctgcgcca gggtcagctg gatgtcgccg gtgcccggcg
     1081 gcatgtcgac gatcaggtag tccaggtcgt cccaggccgt ctgggtcacc aattgcagca
     1141 gcgcgccgga aaccatcggc ccgcgccaga ccaccggggt gttgtcgtcg gtgaggaaag
     1201 ccatggacat cacctgcacg ccgtgggcct ccagcggcac gaagaacttc tggtcgcgta
     1261 ccttggggcg ggtgccctcg gcgatgccga acatgatgcc ctggctgggg ccgtagatat
     1321 cggcgtcgag aatgccgacg cgggcgccct cgcgggccag tgccagggcc aggttggcgg
     1381 cggtggtgga cttgcccacg ccgcccttgc cggaagccac ggcgatgatg ttcttcaccc
     1441 cggccagcgc cggcacctgc tcctgggcct tgtgcggcgc gatggccacg tccacctgca
     1501 cccgcgccga ctcaacgccg tccaggcctt cgagcgccat ctgcagcatc tgcgcccagc
     1561 catttctgaa cagcccggcg gcgtagccga gctccaggcg cacggcgacc ttgccgccct
     1621 gaatgtcgat ctcgcgcagg caaccggcgg acaccgggtc ctggttcaga tgggggtcgg
     1681 tgaactgacg cagacgggct tcgaccgctt cgcgggtgac ggcgctcatg ggcaactccg
     1741 aaagactgag caaaacaggc gggcatctta ccgtaggcgg gaaagccgcc gtaggctcat
     1801 ttcgccgcag ccgcgccgac cgcggaaacc gaccacggca ttgcatgccg cgtcccgccg
     1861 cgcgggtgaa aaaaagccgc cgggcctata tagttgccga cttccctcgt aacacccgat
     1921 ggcccgatca ccatgtccga agcccgcaag attctcgtca ccagcgccct gccctacgcc
     1981 aacggctcga tccacctcgg ccacatgctc gagtacatcc agaccgacat gtgggtg
//
LOCUS       DATIHC010000137         2054 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5144, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000137 DATIHC010000000
VERSION     DATIHC010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2054
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5144"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..426)
                     /locus_tag="VLF16_02250"
     CDS             complement(<1..426)
                     /locus_tag="VLF16_02250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003455477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HSX69727.1"
                     /translation="MEFSYEEMVRLSQAWLPVVLEYSGKLTLALVTLAIGWWLINRVT
                     GRLALLMQGRKVDLALTGFIRSLANIVLKVLLLVSVASMVGISTASFIAAIGAAGLAI
                     GLALQGTLQNIAAGIMLLALRPFRIGEYVEVGEVAGTIEE"
     gene            complement(535..1014)
                     /locus_tag="VLF16_02255"
     CDS             complement(535..1014)
                     /locus_tag="VLF16_02255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HSX69728.1"
                     /translation="MPSFDVVSELDKHELTNAVDNATKELDRRFDLRGKCSLESNDKT
                     ITITAEAEFMLEQVLDIVRASLIKRKIDSQCMEAKEPYASGKVMKQEVTFREGIDKEL
                     AKKIVALVKDAKLKVQAAIQGEQVRITGKKRDDLQEAIALLRGQDLGMPLQYNNFRD"
     gene            1163..>2054
                     /locus_tag="VLF16_02260"
     CDS             1163..>2054
                     /locus_tag="VLF16_02260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003448429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX69729.1"
                     /translation="MPNPHLSILVVDDAKFSSAMIGRALSQAGYQDVRFANSAAEALR
                     LLEKRPASVLLADWLMPEMDGLDLTGRVRQLDETAEHYTYVILLTGKEGDNVLSEAFD
                     RGVDDFISKAAMNEQLVPRVYAADRLCNTLQRLLNENRMLTQNIASLEQRNLVDPLTG
                     LGNPRYLQQKLGDCLRQVESRGGALCYLLIGLQEGEALRLQHGNGFWNEVLHGVARRL
                     QQLVRPLDVLTRVDDTHFGMIAMLDDLHECSPSSFKRMHEGLNLKAFKTSEGFISLKA
                     GIALVGLDAKSLPVEPHLLFA"
BASE COUNT          349 a          697 c          651 g          357 t
ORIGIN      
        1 ctcctcgatc gtgccggcga cctcgccgac ctcgacatat tcgccgatgc ggaagggccg
       61 gagcgcgagc agcatgatgc cggcggcgat gttctgcagc gtgccctgca gcgccaggcc
      121 gatggccagg cccgcggcac cgatggcggc gatgaacgac gccgtagaga tgccgaccat
      181 ggacgccacg ctaaccagca gcaacacctt gagcacgatg ttggccaggc tgcggatgaa
      241 gccggtcaac gccaggtcca ccttgcgccc ctgcatcagc agggcgaggc gcccggtgac
      301 gcggttgatc aaccaccagc cgatcgccag ggtgaccagc gccagggtca gcttgccgct
      361 gtactccagc accaccggca gccaggcctg cgacagcctc accatctcct cgtagctaaa
      421 ttccatggct cactcctttt cggacagcgg aaacgacgcc gccatggggg aaccatggcg
      481 gcgaggggtg taactgctag acgcctgcgg gacgcgcgag gttccctcgc ggcatcagtc
      541 gcggaagttg ttgtactgca gcggcatgcc caggtcctgg ccgcgcagca gggcaatggc
      601 ctcctgcagg tcgtcgcgct tcttgccggt gatgcgcacc tgctcgccct ggatggcggc
      661 ctgcaccttg agcttggcgt ccttgaccag ggcgacgatc ttcttcgcca gctccttgtc
      721 gatgccttcg cggaaggtca cttcctgctt catcaccttg ccggaggcgt agggctcctt
      781 ggcctccatg cactggctgt cgatcttgcg cttgatcagg ctggcgcgaa cgatgtcgag
      841 cacctgctcg agcatgaact ccgcctcggc ggtgatggtg atggtcttgt cgttgctttc
      901 gaggctgcac ttgccgcgca ggtcgaagcg gcggtcgagc tccttggtgg cattgtcgac
      961 cgcattggtg agttcgtgct tgtccagttc cgacaccacg tcgaacgaag gcatgggctt
     1021 gctcctgatg gacggcgcga tccccctcac ggagtgagcg cgcctgactt gacgataaaa
     1081 atggcgcgcc cattatagcc agtctgacgc gccgttcggc caaaccgcgg cgccaaccct
     1141 ctcctgcctg cgagcctcct caatgcccaa cccccatctc agcatcctgg tggtggacga
     1201 cgccaagttc tccagcgcca tgatcggccg cgccctgagc caggccggct accaggatgt
     1261 gcgcttcgcc aacagcgccg ccgaggccct gcgcctgctg gagaagcgcc ccgccagcgt
     1321 gctgctggcc gactggctga tgccggagat ggatggcctg gatttgaccg gccgggtgcg
     1381 ccagctggac gagacggccg agcactacac ctacgtcatc ctgctgaccg gcaaggaagg
     1441 cgacaacgta ctctccgagg ccttcgaccg cggtgtcgac gatttcatca gcaaggcggc
     1501 gatgaacgag cagctggtgc cacgggtgta tgcggcggat cgcctgtgca acaccctgca
     1561 gcgcctgctc aatgaaaacc gcatgctgac ccagaacatc gccagcctcg agcagcgcaa
     1621 cctggtcgac ccgctgaccg gtctgggcaa cccgcgttac ctgcagcaga agctcggcga
     1681 ctgcctgcgc caggtcgagt cccgcggcgg cgcgctgtgc tacctgctga tcggcctgca
     1741 ggaaggcgag gcgctgcgcc tgcagcacgg caacggtttc tggaacgagg tgctgcacgg
     1801 cgtggcgcgt cgcctgcagc agctggtgcg gccgctggac gtgctgaccc gggtcgacga
     1861 cacccacttc ggcatgatcg ccatgctcga cgacctccac gaatgctcgc cgagcagctt
     1921 caagcgcatg cacgagggcc tcaacctcaa ggccttcaag accagcgagg gtttcatcag
     1981 cctcaaggcc ggcatcgccc tggtcggcct ggacgccaag tcgctgccgg tcgagccgca
     2041 tctgctgttc gccg
//
LOCUS       DATIHC010000138         1508 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7312, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000138 DATIHC010000000
VERSION     DATIHC010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1508
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7312"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1508)
                     /locus_tag="VLF16_02265"
     CDS             complement(<1..>1508)
                     /locus_tag="VLF16_02265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002553682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSX69730.1"
                     /translation="LAGGQRPAVRIKVDPQALASHGLNLADVRELIAAQNVNQPKGNF
                     DGPTRVSQLDANDQLKSAEEYQDLILKYENGAALRLRDVATTEDGAENERLAAWANRN
                     ETVLLTIQRQPGANVIEVVDRIQSLLPQITASLPSTLEVQVLTDRTQTIRAAVKDVQF
                     ELVLAIGLVVLVTFLFLRKFSATVIPSIAVPLSLIGTFGVMYLAGFSINNLTLMALTI
                     ATGFVVDDAIVMLENIARHLEEGETPFNAALKGAKQIGFTLISLTFSLIAVLIPLLFM
                     ADVVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKAEKEEEQGRFYKSAGAVID
                     RLIERYAVGLNWTLRHQGLTLLVAVGTLALTVVLYLVVPKGFFPVQDTGVIQGISEAP
                     QSISFQAMSERQQRLTDVILRDPDVASLSSYIGVDGDNPTLNSGRLLINLKPHAERDV
                     TASEVIERLRPELAEVPGIALYLQPVQDLTIEDRVSRTQFQFSLESPDSDLL"
BASE COUNT          248 a          476 c          538 g          246 t
ORIGIN      
        1 ccagcaggtc gctgtccggc gactccaggc tgaactgaaa ctgggtgcgg ctgacccggt
       61 cctcgatggt caggtcctgc accggctgca ggtacagggc gatgcccggc acctcggcca
      121 gctcggggcg caggcgctcg atcacctcgc tggcggtgac gtcacgctcg gcatgaggct
      181 tgaggttgat cagcaggcgg ccgctgttca gcgtcgggtt gtcgccgtcc acgccgatgt
      241 aggacgacag gctggccacg tccgggtcgc gcaggatgac gtcggtgagg cgctgctggc
      301 gctcgctcat ggcctggaac gagatcgact gcggcgcctc ggaaatgccc tggatcacgc
      361 ccgtgtcctg caccgggaag aagcccttgg gcacgaccag gtacaacacc acggtaagcg
      421 ccagggtgcc gacggccacc agcagggtca ggccctggtg gcgcagggtc cagttcaggc
      481 ccacggcgta gcgctcgatc aggcggtcga tgaccgcgcc ggcgctcttg tagaagcgcc
      541 cctgttcctc ttccttctcg gccttgagca ggcgcgcgca catcatcggc gtgagggtca
      601 gcgacaccac cagggaaatc aggatggcca ccgccagggt gatggcgaac tcgcggaaca
      661 gccgcccgac cacgtcggcc atgaacagca gcggaatcag caccgcgatc agcgagaagg
      721 tcagcgagat cagggtgaag ccgatctgct tggcgccctt gagcgcggcg ttgaacggcg
      781 tctcgccctc ctccaggtgg cgggcgatgt tctccagcat gacgatggca tcgtccacca
      841 cgaagccggt ggcgatggtt agggccatca gcgtcaggtt gttgatcgag aagccggcca
      901 ggtacatcac gccgaaagtg ccgatcagcg acagcggcac ggcgatggac gggatcacgg
      961 tggcggagaa cttgcgcagg aacaggaagg tcaccagcac caccaggccg atggccagga
     1021 ccagctcgaa ctgcacgtcc ttgaccgccg cgcggatggt ctgggtacgg tcggtgagta
     1081 cctgcacctc gagggtggac ggcagcgacg cggtgatctg cggcagcagg ctctggatgc
     1141 ggtcgaccac ctcgatgacg ttggcgccgg gctggcgctg gatggtcagc agcaccgtct
     1201 cgttgcggtt ggcccaggcg gccaggcgtt cgttctcggc gccgtcctcg gtggtggcga
     1261 catcgcgcag gcgcagggcc gcgccgttct catacttgag gatcaggtcc tggtattcct
     1321 cggcggactt cagctggtcg ttggcatcca gctgcgacac gcgggtcggg ccgtcgaagt
     1381 tgcccttggg ctggttgacg ttctgcgcgg cgatcagctc gcgcacgtcg gccaggttca
     1441 aaccgtggct ggccagggcc tgcgggtcga ccttgatgcg cacggccggg cgctggccgc
     1501 cggccagg
//
LOCUS       DATIHC010000139         1583 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5170, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000139 DATIHC010000000
VERSION     DATIHC010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5170"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..786)
                     /locus_tag="VLF16_02270"
     CDS             complement(<1..786)
                     /locus_tag="VLF16_02270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007955376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSX69731.1"
                     /translation="MSIQQGRIDVHHHIIPPVYAEAIHRHGLQLHAGAPLPTWTPEKS
                     LQVMDLNGIQRAITSLTTPGAHLGGGEGQASALARACNEYAADLCQRYSERFGSFALL
                     PLPFTEAACAEAVHALDVLRADGVVVFGSNDGVFLGDPRLEELMAELDRRAAVVFVHP
                     NLHQTSEQLGMQAPGFLIEFLCDTTRAAVNLILTGTLERYPRIRWILAHGGGFLPYVA
                     WRVSLANALPQFQDKAPQGVMSYIKRFYFDTALSPSRYSMAALK"
     gene            1024..>1583
                     /locus_tag="VLF16_02275"
     CDS             1024..>1583
                     /locus_tag="VLF16_02275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007929158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HSX69732.1"
                     /translation="MQALNPVQRRIHQAALRLFAEKGVNQVNISDLAQEAGVARGTIY
                     NNVESIEQLFQQVASQLSKEMHQRVSKSFAEVQDPAQRLANGIRFFIRRTHEEPQWGT
                     FLSRFAMSDASLREMFYSQATLDLMSGLQAGRYQFRQEQMVSVISLISGATLAAMFLV
                     IEGLKTWRDAGSDTAELILRSLGLTS"
BASE COUNT          316 a          458 c          510 g          299 t
ORIGIN      
        1 cttgagtgcc gccatcgaat agcgcgacgg cgacagtgcg gtgtcgaagt agaagcgctt
       61 gatgtagctc atcacgcctt gcggcgcctt gtcctggaac tgcggcaagg cattggccag
      121 tgatacccgc caggccacgt acggcaggaa gccaccaccg tgggcaagaa tccagcggat
      181 gcgcgggtag cgctccagcg taccggtgag gatcaggttg accgccgcgc gcgtggtgtc
      241 gcaaagaaat tcgatgagga agcccggcgc ctgcatgccc agctgctcgc tggtctggtg
      301 caggttgggg tggacgaaga ccaccgcagc gcggcgatcc agttcggcca tcagttcttc
      361 gaggcgcggg tcgccgagga acacgccgtc gttgctgccg aacaccacca cgccgtcggc
      421 gcgtagcacg tccagcgcat ggaccgcctc ggcgcaggcc gcttcggtga agggcaatgg
      481 cagcagggcg aaactgccga agcgctcgga gtagcgctgg cagagatcgg cggcgtactc
      541 gttacaagcc cgtgccagag cgctggcctg gccttcgccg ccacccaggt gagcgcctgg
      601 ggtagtcagc gaggtgatcg cccgctgaat gccgttgagg tccatgacct gcagcgattt
      661 ttcgggtgtc cacgttggca acggcgcacc ggcgtgcagc tgcaggccat gacggtgaat
      721 ggcctcggca tacacagggg gaatgatgtg gtggtgaacg tcgatgcggc cttgctggat
      781 gctcatagtt gttgtgcctg gtcggacatc tcagggcaat gatgaacatc agtgttcaat
      841 aaaatcaata tccatacgat ggataacttt cctcgagcgt gattgaaatt gcttaactcc
      901 ccaatatatt gggcctcgag agggtttctg cgtttctaaa tgggactctc gggaaaacac
      961 ctgttgaccg gtgttgaaca tcagtgttca attgtcgcgg attcgattct ggagaaagtc
     1021 cctgtgcaag ccctcaatcc cgtgcaacgc cgcatccatc aggccgcgct gcgcctgttc
     1081 gccgagaagg gcgtcaatca ggtcaacatc agcgacctgg ctcaggaagc cggggtggcg
     1141 cggggcacca tctacaacaa tgtcgagagc atcgagcagc tgttccagca ggtcgccagc
     1201 cagttgagca aggagatgca ccagcgcgtc agcaagagct tcgccgaagt gcaggacccg
     1261 gctcagcggc tggccaacgg catccgcttt tttatccggc gcacgcacga agagccgcaa
     1321 tggggcacct tcctcagccg cttcgcgatg agcgatgcct cgctgcgcga gatgttctac
     1381 agccaggcca ctctcgacct gatgagcggg ctgcaagcgg gccgctacca gttccgccag
     1441 gagcagatgg tcagcgtgat ctcgctgatt tccggtgcaa ccctggcggc catgtttctg
     1501 gtgatcgaag gcctgaagac ctggcgtgat gccggaagcg ataccgccga attgatcttg
     1561 cgctcgttgg gactgacgag cga
//
LOCUS       DATIHC010000140         2295 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35541, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000140 DATIHC010000000
VERSION     DATIHC010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2295)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2295)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2295
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35541"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            104..685
                     /locus_tag="VLF16_02280"
     CDS             104..685
                     /locus_tag="VLF16_02280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013713320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69733.1"
                     /translation="MNPVLSTPDAPPARARGRLQLLLLLLVAIGPMILATAMYQWRFW
                     VPDGRNYHGTLIGDGTQLADIGVQGAAQERWQLLITAPGDCAADCRQLVYTARQIHIG
                     LNRDATRAVHGLALSGQVDAAYDDELTREYPQLGRYRLEDAGYGKAVPAGEGAQLWIV
                     DPQGNLVLRYGAGTKGKDILNDLRLLLKLSQIG"
     gene            729..1787
                     /locus_tag="VLF16_02285"
     CDS             729..1787
                     /locus_tag="VLF16_02285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HSX69734.1"
                     /translation="MSERKTLPGYRLALFATALAVVVVLLGAYTRLTHAGLGCPDWPG
                     CYGFIGVPMSDHKQSLAEERFPHAPVEVEKGWNEMVHRYFAGTLGLVILGLAVQAVRR
                     RGADGQPLKLPLLLLGVVIAQAAFGMWTVTLKLWPQVVTGHLLGGFTTLALLFLLSLR
                     LSGAMPVLPGLSLRLRALAGVALLLAGCQIALGGWVSSNYAAVACVDLPTCHGEWWPA
                     MDFANGFHLTQHIGPNYLGGQLDSDARTAIHMTHRLGAVALSLVLLLLAWRLRAAGLG
                     RLAGLLLLALAAQVSLGVSNVLLHLPLAVAVAHNAGGAALLLVLVLINYRLRAVPLAA
                     SKRVEADLASVRLAPLGK"
     gene            1803..>2295
                     /locus_tag="VLF16_02290"
     CDS             1803..>2295
                     /locus_tag="VLF16_02290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HSX69735.1"
                     /translation="MATALRAHSESASWRDYLELTKPRVVLLMLITSLVGMFLATRAG
                     VPWTVLVFGNLGIGLCAGAAAAVNHVVDRRIDSIMARTHKRPVTAGRLSVPAALGFAL
                     LLAVAGMALLLSFTNELAAWLTLASLLGYAVLYTGFLKRATPQNIVIGGLAGAAPPLL
                     GWVA"
BASE COUNT          309 a          825 c          769 g          392 t
ORIGIN      
        1 gtgcaatggt tcgccctggc cgcagccctg gtcggtctct acctctatct cggtttgcac
       61 aattcacgac agaacgcgcg ggagcagcag catgagcaca gccatgaatc cggtcctctc
      121 cacccctgac gcgccgccgg cacgcgcccg tggacgcctg cagctactgc tgctgctgct
      181 ggtggcgatc ggcccgatga tcctcgccac tgccatgtat cagtggcgtt tctgggtgcc
      241 ggacgggcgc aactaccacg gcaccctgat cggcgacggc acccaactgg ccgacatcgg
      301 cgtgcagggc gccgcgcagg agcgctggca attgctgatc accgcccctg gcgactgcgc
      361 cgcggattgc cgccagctgg tctataccgc ccgacagatc catatcggcc tcaaccgcga
      421 tgccacccgc gcggtccacg gcttggcgct gagcggacag gtggacgccg cctacgacga
      481 cgagctcacg cgcgaatacc cgcaactcgg ccgctatcgg ctggaggatg cgggctacgg
      541 caaggccgtg ccggcgggcg agggtgcgca actgtggatc gtcgaccccc agggcaacct
      601 ggtgctgcgc tacggcgccg ggaccaaggg caaggacatc ctcaacgacc tgcgcctgct
      661 gctgaagctg tcgcagatcg gctgaccgac tccgcctacc ggccccataa caacaagaga
      721 ggccccggat gagtgaacgc aagaccctgc ccggctaccg cctggccctg ttcgccaccg
      781 ccctggcggt ggtggtggta ctgctcggcg cctatacccg gctgacccac gccggcctcg
      841 gctgcccgga ctggccgggc tgctacggct tcatcggcgt gccgatgagc gatcacaagc
      901 agagcctggc cgaggagcgc ttcccccatg cgccggtgga ggtggagaag ggctggaacg
      961 agatggttca ccgctacttc gccggtaccc tcggtctggt catcctcggc ctggccgtgc
     1021 aggccgtacg ccgacgcggt gccgacggcc agccgttgaa gctgccgctg ctgctgctcg
     1081 gcgtggtcat cgcccaggcc gccttcggca tgtggacggt caccctcaag ctgtggccgc
     1141 aggtggtcac gggccacctg ctcggcggct tcactaccct ggccctgttg ttcctgctca
     1201 gcctgcgcct gtccggcgcg atgccggtgt tgcccggact ttccctgcgc ctgcgcgcgc
     1261 tggccggcgt ggcgctgttg ctggcgggct gccagatcgc cctgggcggc tgggtcagct
     1321 ccaactacgc ggcggtggcc tgcgtcgatc tgccgacctg ccatggcgaa tggtggccgg
     1381 cgatggattt cgccaacggc ttccacctga cccagcacat cggccccaac tacctgggtg
     1441 gccagctgga cagcgacgcc cgcaccgcca tccatatgac ccacaggctc ggtgcggtgg
     1501 cactcagcct ggttctacta ctgctggcct ggcgtctgcg cgccgccggg ctcggtcgcc
     1561 tggccggcct gctgctgctg gcgctggccg cgcaggtcag cctgggcgtg agcaatgtgc
     1621 tgctgcacct gccgctggcc gtggccgtgg cgcacaacgc cggtggcgcc gcgctgctgc
     1681 tggtgctggt gctgatcaac tatcgcctgc gggcggttcc cctggcggcg agcaagcgcg
     1741 tggaggccga cttggcctct gtccgcctcg ctccgctggg taaataagca aggagatacg
     1801 ccatggctac tgcgctgcga gcccactccg aatccgccag ctggcgcgac tacctggagc
     1861 tgaccaagcc ccgggtggta ctgctgatgc tgatcacctc gctggtcggt atgttcctcg
     1921 ccacccgcgc cggcgtgccc tggaccgtgc tggtgttcgg caacctcggc atcggcctgt
     1981 gcgccggcgc ggcggcggcg gtcaaccacg tggtcgaccg gcgcatcgac tcgatcatgg
     2041 cgcgtaccca caagcgcccg gtcaccgccg ggcggctctc ggtgccggcc gcgctgggct
     2101 tcgccctgtt gctggcggtg gccgggatgg ctctgctgct cagcttcacc aacgagctgg
     2161 ccgcctggct gaccctggcc tcgctgctcg gctacgcggt gctctacacc ggctttctca
     2221 agcgcgccac gccgcagaac atcgtgatcg gcggcctggc cggtgccgcg ccgccgctgc
     2281 tgggctgggt cgcag
//
LOCUS       DATIHC010000141         1502 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37590, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000141 DATIHC010000000
VERSION     DATIHC010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1502
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37590"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            63..>1502
                     /gene="mnmG"
                     /locus_tag="VLF16_02295"
     CDS             63..>1502
                     /gene="mnmG"
                     /locus_tag="VLF16_02295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HSX69736.1"
                     /translation="MDFPSRFDVIVIGGGHAGTEAALAAARIGVKTLLLTHNVETLGQ
                     MSCNPAIGGIGKSHLVKEIDALGGAMALATDKGGIQFRVLNSRKGPAVRATRAQADRV
                     LYKAAIREILENQPNLWIFQQSADDLIVEQDQVKGVVTQMGLRFHADNVVLTTGTFLG
                     GLIHIGLQNYSGGRAGDPPSIALAKRLRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQ
                     PGDTPIPVMSFLGNKDMHPQQISCWMTHTNARTHEIIASNLDRSPMYSGVIEGIGPRY
                     CPSIEDKIHRFADKDSHQVFIEPEGLTTHELYPNGISTSLPFDVQLEIVRSIRGMENA
                     HIVRPGYAIEYDYFDPRDLKYSLETKVIGGLFFAGQINGTTGYEEAGAQGLLAGANAA
                     LRAQGKDAWCPRRDEAYIGVLVDDLITLGTQEPYRMFTSRAEYRLQLREDNADMRLTE
                     TGRRLGLVPDDRWDAFCRKRDAVSRETERL"
BASE COUNT          284 a          516 c          447 g          255 t
ORIGIN      
        1 caactcccta tacttgccac cccttttcaa tccccccttt ctcaacaggc acgaggtgcg
       61 tggtggactt cccttcccgt tttgacgtga tcgtgatcgg cggcggccat gccggcaccg
      121 aggctgcgtt ggcagccgca cgcataggcg tgaagaccct gctgctgacc cacaacgttg
      181 aaaccctagg ccagatgagc tgcaaccccg cgattggcgg aataggtaaa agccacctgg
      241 tcaaggaaat cgatgccctg ggcggtgcca tggcgctggc caccgacaag ggcggcatcc
      301 agttccgtgt gctcaacagc cgcaagggtc cagccgtacg cgccacgcgc gcccaggccg
      361 accgtgtgct gtacaaggcg gcaatccgcg agatcctgga aaaccagccg aacctgtgga
      421 tatttcagca gtccgctgac gacctgatcg tcgagcagga ccaggtcaag ggcgtggtca
      481 cccagatggg tctgcgcttc cacgcggaca acgtggttct caccaccggc accttcctcg
      541 gtggacttat ccacatcggc ctgcagaact actccggcgg ccgcgccggc gatccgccct
      601 ccatcgctct ggccaagcgc ctgcgcgagc tgccgctgcg tgtcggccgc ctgaagaccg
      661 gaaccccacc gcgcatcgat ggccgttccg tggacttctc ggtgatgacc gagcagcccg
      721 gcgatacgcc gatcccggtg atgtccttcc tcggcaacaa ggacatgcat ccgcagcaga
      781 tcagttgctg gatgacccac accaacgcgc gcacccacga gatcatcgcc agcaacttgg
      841 atcgctcgcc gatgtattcc ggcgtgatcg agggcatcgg cccgcgctac tgcccgtcga
      901 tcgaggacaa gattcatcgc ttcgccgaca aggacagcca ccaggtgttt atcgagccgg
      961 aaggcctgac cacccacgag ctgtatccca acggcatctc cacctcgctg ccgttcgacg
     1021 tgcagctgga gatcgtccgt tcgatccgcg gcatggagaa cgcccacatc gtgcgtcccg
     1081 gctacgccat cgagtacgac tacttcgatc cgcgcgacct caagtacagc ctggagacca
     1141 aggtcatcgg cggcctgttc ttcgccggcc agatcaacgg caccaccggc tacgaagaag
     1201 ccggtgccca gggcctgctg gccggggcca acgccgcgct gcgtgcccag ggcaaagatg
     1261 cctggtgtcc gcgccgtgac gaggcctata tcggcgtgct ggtcgacgat ctgatcaccc
     1321 tgggtaccca ggagccgtac cgcatgttca cctcgcgcgc ggaataccgg ctgcagttgc
     1381 gcgaggacaa cgccgacatg cggctgactg agaccggacg gcggctgggc ctggtcccgg
     1441 acgatcgctg ggacgccttc tgccgcaagc gcgacgctgt ttcacgtgaa acagagcggc
     1501 tt
//
LOCUS       DATIHC010000142         1533 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2710, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000142 DATIHC010000000
VERSION     DATIHC010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1533
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2710"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..657
                     /locus_tag="VLF16_02300"
     CDS             <1..657
                     /locus_tag="VLF16_02300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSX69737.1"
                     /translation="KEDSLHYQLMRARTQLMFEETPGIAAKRFRDMLDKNPKLDAARY
                     GLALAQIKAGRREDARKILTELLTKEPDDLVYNLAMVDLDENANRLADASKRVERLRS
                     LYPDSYPLEQARIDLMLKLNQQQQAEAALDELLKQRGNDPDVWYQVAEVRGLTGNIIG
                     LHQARAEFFALVGDYDQALEQLDLAKRRASSNFPMASRIDARQQELMEEKRALEKMMR
                     "
     gene            complement(713..>1533)
                     /gene="nadA"
                     /locus_tag="VLF16_02305"
     CDS             complement(713..>1533)
                     /gene="nadA"
                     /locus_tag="VLF16_02305"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HSX69738.1"
                     /translation="AQTLVVSGVKFMGETAKILNPEKRVLMPTLEATCSLDLGCPVDE
                     FSAFCDQHPDRTVVVYANTSAAVKARADWVVTSSCALEIVESLMDNGEKILWAPDQHL
                     GRYIQRETGADMLLWDGACIVHEEFKAKQLEDMKALHPEAAILVHPESPEAVIELADA
                     VGSTSQLIKAAQTLPNKTFIVATDRGIFYKMQQLCPDKVFVEAPTAGNGAACRSCAHC
                     PWMAMNTLQRTLQCLREGSNEILVEPALIPRAIKPLKRMLDFTQAARLKLAGNA"
BASE COUNT          281 a          528 c          484 g          240 t
ORIGIN      
        1 aaggaagaca gcctgcacta tcagttgatg cgcgcccgca cccagctgat gttcgaggaa
       61 accccgggca tcgccgccaa gcgcttccgc gacatgctcg acaagaaccc caagctcgac
      121 gccgcgcgct atggcctggc cctcgcccag atcaaggccg gccgacgcga agatgcacgc
      181 aagatcctca ccgaactgct gaccaaggag ccggacgacc tcgtctacaa cctggccatg
      241 gtcgacctgg acgagaacgc caatcgcctg gccgacgcca gcaagcgcgt cgagcggctg
      301 cgcagcctgt acccggacag ctatccgctg gagcaggcgc gcatcgacct gatgctcaag
      361 ctgaaccagc agcaacaggc cgaggccgca ctggacgaac tgctcaagca gcgcggcaac
      421 gacccggacg tctggtatca ggtggccgag gtacgcggcc tgaccggcaa catcatcggc
      481 ctgcaccagg cccgcgccga gttcttcgcc ctggtcggcg actacgacca ggccctggaa
      541 cagctcgacc tggccaagcg ccgcgccagc agcaacttcc ccatggcctc gcgcatcgac
      601 gcgcgccagc aggagctgat ggaagagaaa cgcgcgctag agaagatgat gcgctgaacc
      661 cagccatgaa aaagcccggc aatcgccggg cttttttctg cacaccgaaa actcaggcat
      721 tgcccgccag cttcagccgc gccgcctggg tgaagtccag catgcgcttg agcggcttga
      781 tcgcccgcgg gatcagcgcc ggctcgacga ggatctcgtt gctgccctcg cgcaggcact
      841 gcagggtgcg ctgcagggtg ttcatggcca tccacgggca gtgggcacag ctgcgacagg
      901 cggcgccgtt gccggcggtg ggcgcctcga cgaagacctt gtcggggcac agctgctgca
      961 tcttgtagaa gatgccgcgg tcggtggcga cgatgaaggt cttgttcggc agggtttgcg
     1021 ccgccttgat cagctggctg gtggagccca ccgcgtcggc cagctcgatc accgcctcgg
     1081 gcgactccgg atggaccagg atggcggcct ccggatgcaa cgccttcatg tcttccagct
     1141 gcttggcctt gaactcctcg tggacgatgc aggcgccgtc ccacagcagc atgtcggccc
     1201 ccgtttcgcg ctggatgtag cggcccaggt gctggtccgg tgcccagagg atcttctcgc
     1261 cgttgtccat caggctctcg acgatctcca gcgcgcagct ggatgtcacg acccagtcgg
     1321 cgcgcgcctt caccgccgcc gaggtgttcg cgtagaccac cacggtgcgg tcagggtgct
     1381 ggtcgcagaa agccgagaac tcgtccaccg ggcagcccag gtcgagcgaa caggtggcct
     1441 ccagggtcgg catcagcacg cgcttttccg ggttgaggat cttcgccgtc tcgcccatga
     1501 acttcacgcc cgacaccacc agcgtctgcg ccg
//
LOCUS       DATIHC010000143         1583 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28390, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000143 DATIHC010000000
VERSION     DATIHC010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28390"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1583
                     /locus_tag="VLF16_02310"
     CDS             <1..>1583
                     /locus_tag="VLF16_02310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017519495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSX69739.1"
                     /translation="AKEHAELAAAAKTTFLANMSHEIRTPMNAIIGFTELLLDGVLSE
                     QQRRHLGTVRQAARSLLGLLNDILDTAKLERGAVELEDMDFSLRELCGQVCDALRLGA
                     EGKGLSLCLDYQEGLGDFFKGDPLRIQQVLTNLVGNAVKFTESGWVRLEVSGEPGRVQ
                     LAVRDSGIGIAEDRLQHIFDPFAQADASMSRRFGGTGLGTTIARQLTELMGGSIRVES
                     RLGAGSLFLVELPLRAGEASGIDRGVVVQQLPELNILAADDVAQNIELLGLTLGAMGH
                     RVTTASDGEQALAAFVGGRYDVLLMDVQMPRMDGLEATRRIRTHEEAHGLQRTPVIAL
                     TASVLEQDRRAAREAGMDGFASKPLEMNKLLAEIARVIGLTPTQADQPAATGEAAEDL
                     SIDWPRGIQLWGSEQTMAAAIRRFLAEHADSCAEIEALLQEGWRIEAIELVHRLRGAA
                     ANLALVRASRLAGQLEHALKGAIPASVDELLGSLVEVLAALPEELPPPVATVEEGVTP
                     LSPAELAELIDQARGALQH"
BASE COUNT          249 a          533 c          580 g          221 t
ORIGIN      
        1 atgccaagga gcacgccgaa ctggccgccg ccgccaagac cactttcctg gccaacatga
       61 gccacgagat ccgcacgccg atgaacgcca tcatcggctt caccgagctg ttgcttgacg
      121 gtgtgctcag cgagcagcag cgccgccacc tgggcaccgt gcgccaggcc gcgcgctcac
      181 tgctgggcct gctcaacgac atcctcgaca ccgccaagct ggagcgcggc gcggtggagc
      241 ttgaggacat ggacttctcc ctgcgcgaac tctgcgggca ggtctgcgat gccctgcgcc
      301 tgggcgccga gggcaagggg ctgagcctgt gcctggacta tcaggaaggg ctgggcgact
      361 tcttcaaggg cgatccgctg cgcatccagc aggtgctcac caacctggtg ggcaacgcgg
      421 tgaagttcac cgagagcggt tgggtgcggc tcgaggtgag tggcgagccg ggccgggtgc
      481 aactggcggt gcgcgacagc ggcatcggta tcgccgagga tcgcctgcag cacatcttcg
      541 accccttcgc ccaggcggat gcctctatga gccggcgctt cggcggcacc ggcctcggca
      601 ccaccatcgc ccgccagctc accgagctga tgggcggcag cattcgcgtg gagagccgcc
      661 tgggcgccgg cagcctgttc ctggtggaac tgccgctgcg ggccggcgag gcgagtggca
      721 tcgaccgtgg cgtggtggtg cagcagttgc cggagctgaa catcctggcc gccgacgacg
      781 tggcgcagaa catcgagctg ctcggcctga cgctgggcgc catgggccac cgggtgacca
      841 ccgccagcga cggcgagcaa gccctggcgg cgttcgtcgg cgggcgctac gacgtgttgc
      901 tgatggatgt gcagatgccg cgcatggacg gcctcgaggc gacccggcgc atccgtaccc
      961 atgaggaggc ccacggcctg cagcgcacgc cggtgatcgc cctgaccgcc agcgtgctgg
     1021 agcaggaccg ccgcgccgcg cgtgaggccg gcatggacgg tttcgcctcc aagccgctgg
     1081 agatgaacaa gctgctggcc gagatcgcgc gggtgatcgg cctgacaccg acgcaggcgg
     1141 accagccggc ggcgaccggg gaggcggcgg aggacctgtc catcgactgg ccgcgcggca
     1201 tccagctgtg gggcagcgag cagaccatgg ccgcggcgat ccggcgcttc ctcgccgaac
     1261 acgccgacag ttgcgccgag atcgaggcgc tgttgcagga aggctggcgc atcgaagcca
     1321 tcgagctggt ccatcgcctg cggggcgccg ccgccaacct ggcgctggtg cgcgccagcc
     1381 gcctggccgg ccagctggag catgcgctga aaggtgccat accggcctcg gtggacgagt
     1441 tgctgggcag cctggtcgag gtcctggccg cgctgccgga ggaattgccg ccgccagtgg
     1501 ctacagtgga agagggcgtg acgccgttga gccccgccga gctggccgag ctgatcgacc
     1561 aggcgcgcgg agccctgcag cac
//
LOCUS       DATIHC010000144         2403 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_237, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000144 DATIHC010000000
VERSION     DATIHC010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1107
                     /locus_tag="VLF16_02315"
     CDS             <1..1107
                     /locus_tag="VLF16_02315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009613033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69740.1"
                     /translation="ALFCVATKYLQSVIESSSQGVREAPRLAGAFDGEGFSLFWRLLV
                     IFFVSFAVVWLAADFDSEALFWAATLGVQLLIPASIIRLALDKTLGAALSPDEVGAVI
                     KAMGWRYLILWAFLFILWQSPGVVVYMLASGLPKVVLMPIAALLFGYFSVVMCAMMGY
                     AVFQYQGALGYVAVDDEEPRGYPGEEYRRRRALADAEVRLKEGQSAQALEVLAKALDV
                     APNDLKLNERFHQLLFGLNARERCLRHLAHYLPLAARLNPAQAAFALLNARQLQADYL
                     PEDAQVCERVAEALLERHKTREGLSLLRNLHQRFPDYPHIPRAYLLAAHGFAEGLGQV
                     EPAQKLLTFIRIRYPQSPLLDEVARLEATLAKLA"
     gene            1305..1682
                     /locus_tag="VLF16_02320"
     CDS             1305..1682
                     /locus_tag="VLF16_02320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017675327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HSX69741.1"
                     /translation="MKQQFNKWTLAALTAAVLGLPLSNAAFADEVTSPASLQPMQLAA
                     NETVENAEEAVSDTWITSKVKASFLADDSISGLDIKVETNEGVVSLSGVVPSDAERDL
                     AVEKAKAIKGVTSVSADGLKSTE"
     gene            1738..1935
                     /locus_tag="VLF16_02325"
     CDS             1738..1935
                     /locus_tag="VLF16_02325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003095174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HSX69742.1"
                     /translation="MNSDVIKGKWKQLSGRMQERWGNLTNDDLDIVEGHSEYLEGKLQ
                     ERYGWTKERAQEEVRDFSSKL"
     gene            complement(1984..>2403)
                     /locus_tag="VLF16_02330"
     CDS             complement(1984..>2403)
                     /locus_tag="VLF16_02330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016494763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HSX69743.1"
                     /translation="LLERLYAVAWGRQDKPLLTLVLKQLFALPEGTELRPLLLRLATD
                     SREQPMLAHPAVQLHLLQKLLRCGEGAHGMAAWRRLSQMPQPPQQLPSLTLQLAKQQG
                     QRQDLQAVSELARYLSTAFPEAEQTRQLALYRQHLAR"
BASE COUNT          426 a          741 c          783 g          453 t
ORIGIN      
        1 gcgctgttct gcgtcgccac caagtacctg cagagcgtga tcgagagctc cagccaaggc
       61 gtgcgtgaag ctcccaggct ggcgggagcc ttcgacggcg agggcttcag cctgttctgg
      121 cgcctgctgg tgatcttctt cgtcagtttc gccgtggtct ggctggcggc ggacttcgac
      181 agcgaggcgc tgttctgggc ggcgaccctg ggcgtacagc tgctgattcc cgccagcatc
      241 atccgtctcg ccctggacaa gaccctgggc gccgcgctca gcccggacga ggtgggtgcg
      301 gtgatcaagg ccatgggctg gcgctatctg attctctggg cgtttctgtt catcctctgg
      361 cagtcaccgg gggtggtggt ctacatgctc gccagcggcc tgcccaaggt ggtgctgatg
      421 ccgattgcgg cgctgctgtt cgggtatttc agcgtggtga tgtgcgccat gatgggctat
      481 gcggtgttcc agtatcaggg cgcgctgggc tatgtggcgg tggatgatga ggagccgcgt
      541 ggctatccgg gcgaggagta ccggcgccgt cgtgcactgg ccgatgccga ggtgcgactg
      601 aaggaagggc agagcgcgca ggcgctggaa gtcctggcca aggccttgga cgtcgcgccc
      661 aacgatctga agctcaatga gcgcttccac cagttgctct tcggcctcaa tgcccgcgag
      721 cgctgcctgc gtcaccttgc ccattatctg ccgctggccg cccggctcaa tccggcccag
      781 gcggctttcg ccctgctcaa cgcgcgccag ctccaggccg attacctgcc cgaggatgcg
      841 caggtctgcg aacgggtggc ggaggcgcta ctggagcgtc acaagacccg cgagggcctg
      901 agtctgctgc gcaacctgca ccagcgcttc ccggactatc cgcatattcc cagggcctat
      961 ctgttggccg cccacggctt cgccgaagga ctggggcagg tggagccggc gcagaaactg
     1021 ctgacgttca tccgcattcg ctacccgcaa tcgccgctct tggatgaggt cgctcgcctc
     1081 gaggcgacgc tggccaaact ggcctgaggg tattgcattc tgcacggccc aaaccgcgca
     1141 gatcggcatt ttgcatactc gccgaaaaac ggctgtttta taagttgttg aaaataaacg
     1201 atattttatg ccgttcgggt tggcacagcg cttgcgatat ctcctttgca agcgcagcca
     1261 ggagttggct gcgaatattc cgaagcaatc aggagtagat cgccatgaaa cagcagttca
     1321 acaagtggac cctcgccgcc cttactgccg ccgtcctggg cctgccgctg agcaacgcgg
     1381 ccttcgctga cgaagtgact tcgccggcct ccctgcagcc gatgcagctg gccgccaacg
     1441 agaccgtcga aaacgctgaa gaggcggtct ccgacacctg gatcaccagc aaggtcaagg
     1501 ccagcttcct ggctgatgac agcatcagtg gtctggacat caaagtggaa accaacgagg
     1561 gcgtggtctc gctgtccggc gtagtgccga gcgacgctga gcgtgacctg gccgtcgaga
     1621 aggccaaggc catcaagggc gtgacctccg tttccgccga cggcctgaag tccaccgagt
     1681 aaaacccacc ggagtgccgg ccttgagccg gcacttcctc aatcgggaga taccgccatg
     1741 aattccgacg tcatcaaagg caagtggaag caactctccg gccgcatgca ggagcgttgg
     1801 ggcaatctga ccaacgacga tctggatatc gtcgagggtc acagcgaata cctggaaggc
     1861 aagctgcagg agcgttacgg ctggaccaag gaacgggcgc aagaggaagt gcgcgacttc
     1921 agcagcaagc tgtaacgctg gccgctgata tgagatagcc ccgcttgcgg ggctttttca
     1981 ttttcagcgc gccagatgct gccggtacag ggccagctgg cgggtctgtt ccgcctcggg
     2041 aaaggccgtg ctcaggtagc gcgccaactc gctcacggcc tgcaggtcct ggcgctgccc
     2101 ctgttgcttg gccaactgca gtgtcagcga cggcaactgt tgcggcggtt gcggcatctg
     2161 gctgaggcgg cgccaggccg ccatcccgtg ggcgccctca ccgcatctga gcaatttctg
     2221 cagcaggtgt agttgcacgg cgggatgcgc cagcatcggc tgctcccggc tgtccgtggc
     2281 caggcgcaac agcagagggc gaagctccgt gccttccggc agggcgaaca gctgcttgag
     2341 taccagcgtc agcagcggct tgtcctggcg gccccaggcg acggcgtaca gacgctctag
     2401 cag
//
LOCUS       DATIHC010000145         3741 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35547, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000145 DATIHC010000000
VERSION     DATIHC010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3741)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3741)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3741
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35547"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..243)
                     /locus_tag="VLF16_02335"
     CDS             complement(<1..243)
                     /locus_tag="VLF16_02335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69744.1"
                     /translation="MQIGSATSYVAPLPSSQAARPAASDPSLSVDAPADPRAARSTAP
                     RVDADSRDGTSAEGKDKSARELQLLREEQLQISELSR"
     gene            complement(302..571)
                     /locus_tag="VLF16_02340"
     CDS             complement(302..571)
                     /locus_tag="VLF16_02340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015649735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69745.1"
                     /translation="MQITGNAFNTGLSGIQSGMRRVDQAASEIASGTLPAQVEAQPVE
                     AAVQAPNDLAGSLVGLTQGRYEVQANARVVETADEVLGTLIDTRA"
     gene            complement(666..1355)
                     /gene="bioD"
                     /locus_tag="VLF16_02345"
     CDS             complement(666..1355)
                     /gene="bioD"
                     /locus_tag="VLF16_02345"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004141 - dethiobiotin synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HSX69746.1"
                     /translation="MSRAYFVTGTDTEIGKTTIAAGLLHAARRTGLSTAAAKPVASGC
                     VATPDGLRNDDALALLDQCSLALAYDEVNPFAFAPAIAPHLAAREAGVELSVARLLPA
                     VRRVLQRGADFTLVEGAGGWRVPLAGDENLSDLAVALELPVILVVGVRLGCINHAVLS
                     LEAIERDGLRVAGWVANIVDPQTSRLDENLATLAERLPVPCLGRVPCLPRATADAVAE
                     HLDLAPLGVAL"
     gene            complement(1446..2237)
                     /gene="bioC"
                     /locus_tag="VLF16_02350"
     CDS             complement(1446..2237)
                     /gene="bioC"
                     /locus_tag="VLF16_02350"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0102130 - malonyl-CoA methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HSX69747.1"
                     /translation="MSEGALLPDKRRVAESFSRAATSYDGVAELQRQVGGELLAELPS
                     LAPTHWLDLGSGTGHFTRALDERYPHAEGMALDLAEGMLRHARPLGGARHFVAGDAEH
                     LPLRDGGFDLIFSSLAVQWCADFAAVLAEARRVLRPGGVLAFSSLCVGSLQELRDSWQ
                     AVDGFVHVNRFRRFEDYQALCAASGLGVLTLARRARTLHFPDLRALSRSLKDLGAHNL
                     NPGRPDGLTGPARIRALMEAYEHLRTDQGLPLTYQVVYGVLRKED"
     gene            complement(2230..2961)
                     /locus_tag="VLF16_02355"
     CDS             complement(2230..2961)
                     /locus_tag="VLF16_02355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005763768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HSX69748.1"
                     /translation="MRDHLILLPGWGLGSLPLEVLAEALRGLDPALKVEIEPLPELTR
                     GEPRDWLLELDERLPPHTWLGGWSLGGMLASELAALRGERCRGLLTLASNPNFVAGPD
                     WPFAMDERTFNVFVDGCRADPAATLKRFSLLCTQGSSEGRGLARQLQAAAPHTAPEVL
                     LAGLEVLGNFDGRSALQRFAGPQLHLLAGADALVPAEVAGELLALQPDIEVGLIEEVS
                     HAFPLERPHEVAAAIHAFITEVGDV"
     gene            complement(2954..>3741)
                     /locus_tag="VLF16_02360"
     CDS             complement(2954..>3741)
                     /locus_tag="VLF16_02360"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008710 - 8-amino-7-oxononanoate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HSX69749.1"
                     /translation="LNHASLLDAGLLSGARFSRYLHNDAVSLSKRLERAEGNTLVVTD
                     GVFSMDGDLADLPTLCAEARSKGAWVMVDDAHGFGPLGATGGGIVEHFGLGLDDVPVL
                     VGTLGKAFGTAGAFVAGSEELIETLIQFARPYIYTTSQPPAVACASLKSLELLRTEGW
                     RREHLNALIARFRTGAAEIGLSLMDSPTPIQPILVGDSERALRLSALLKERGLLVGAI
                     RPPTVPAGRARLRVTLSAAHSEAQLERLLDALAECWPQVSRDA"
BASE COUNT          589 a         1297 c         1342 g          513 t
ORIGIN      
        1 gcgggaaagc tcggagatct gcagttgctc ctcgcgcaac agctgcagtt cgcgggccga
       61 tttgtccttg ccttcggcgg aagtgccgtc gcggctgtcg gcgtcaacgc gaggcgcagt
      121 ggagcgcgcg gcccggggat cggccggcgc atcgacggac agggaaggat cggacgcggc
      181 cgggcgagcc gcttgggacg atggcagcgg cgcaacgtag ctcgtggcac tgccgatctg
      241 catcactgcc ctcctcgcct cgtcgggcga gcgtcatgac tatcgcggcg cagaataccc
      301 gtcaggcgcg ggtgtcgatc agggtgccca acacctcgtc ggcggtctcc accacgcgag
      361 cgttggcttg cacttcgtag cggccctggg tcaggccgac gaggctgcca gccagatcgt
      421 tgggggcctg gacggccgcc tcgacgggct gggcctcgac ctgcgcgggc agggtaccgc
      481 tggcgatttc gctggccgcc tggtcgacgc gacgcatccc ggactggatg ccgctgagac
      541 ccgtgttgaa ggcgttaccg gtgatttgca tggtgctggc tccctggcgg gacggactcg
      601 tgccggcaat taaagcagaa aatgctcaaa aaacgtacaa gcagagcgcg atggtcgatc
      661 aacggctaga gcgccacccc cagcggcgcg agatccagat gctccgccac cgcgtcggcc
      721 gtcgcccggg gcaggcatgg cacgcggccg aggcaaggta ccggcaggcg ctcggcgagc
      781 gtcgccaggt tctcgtccag gcgcgaggtc tgcggatcga cgatattggc cacccagccg
      841 gccacgcgca gaccgtcgcg ctcgatggct tccaggctga gcaccgcatg attgatacag
      901 cctaaacgca cgccgaccac caggatcacc ggcagctcca gggccacggc caggtccgag
      961 aggttctcgt caccggccag cggcacgcgc cagccgccgg caccttccac cagggtgaag
     1021 tccgcgcccc gctgcagcac gcgccgcacc gcaggcaaca ggcgcgccac gctcagctcg
     1081 acacccgcct cgcgcgccgc caggtgcggg gcgatggccg gggcgaaggc gaacggattg
     1141 acctcgtcat aggccagcgc cagcgaacac tggtcgagca acgccagggc gtcgtcgttg
     1201 cgcaggccat cgggcgtcgc cacgcagccg gaggccaccg gcttggccgc cgccgtgctc
     1261 aggccggtgc ggcgcgccgc gtgcagcagg ccggcggcga tggtggtctt gccgatttcc
     1321 gtgtcggtgc cggtgacgaa ataggctcga ctcatcgcgt tgatctccca atccggcgcg
     1381 gtcttgccgg cttgctatcg acagccggag tatcggggcg agtcccccgg caggcctggt
     1441 tcatctcagt cttccttgcg cagcacgccg tacaccacct ggtaggtgag cggcaggccc
     1501 tggtcggtgc gcaggtgctc gtacgcctcc atcagcgcgc gaatgcgcgc ggggccggtg
     1561 agaccgtccg gccgaccggg attgaggttg tgcgcgccga ggtccttgag cgaacggctc
     1621 agcgcgcgca gatcgggaaa atgcagggtc ctggcgcggc gcgccagcgt cagcactccg
     1681 agaccactgg cggcgcacag cgcctggtaa tcctcgaaac ggcggaagcg gttgacgtgg
     1741 acgaagccgt ccactgcctg ccagctgtcg cgcagctcct gcagcgagcc gacgcacagg
     1801 ctgctgaacg ccagcacgcc acccgggcgc agcacccggc gcgcctcggc aagcaccgcg
     1861 gcgaagtcgg cgcaccattg cacggccagg ctggagaaga tcagatcgaa cccaccatcg
     1921 cgcaagggca ggtgctcggc gtcgccggcg acgaagtggc gggctccgcc cagcggccgg
     1981 gcgtggcgca acatgccctc ggccaggtcc agggccatgc cctccgcgtg cggataacgt
     2041 tcgtccaggg cgcgagtgaa atgcccggtg ccgctgccca ggtccagcca gtgcgtcggc
     2101 gcgaggctcg gcagttcggc cagcagttcg ccaccgacct ggcgctgcag ctcggcgacg
     2161 ccgtcgtagc tggtggcggc gcgggaaaag gactcggcga cccgacgctt gtctggcagc
     2221 agcgcgccct cagacatcgc ccacctcggt gatgaaggca tggatggcgg ccgccacctc
     2281 atgcgggcgc tccaggggga aggcgtggct gacctcctcg atcaggccca cctcgatatc
     2341 cggctgcagc gccagcagct cgccggccac ctcggccggc accagcgcat cggcgccggc
     2401 cagcaggtgc agttgcggcc cggcgaagcg ctgcagggcg ctgcgcccat cgaagttgcc
     2461 cagcacttcc aggccggcca gcagcacctc gggcgccgta tgcggcgcgg cagcctgtag
     2521 ctggcgggcg aggccgcggc cctcgctgga gccctgggtg cagagcaggc tgaagcgttt
     2581 gagcgtggcg gccggatcgg cgcggcagcc gtcgacgaag acgttgaagg tgcgctcgtc
     2641 catggcgaac ggccagtccg gcccggcaac gaagttgggg ttgctggcca gtgtcagcag
     2701 gccacggcaa cgctcgccac gtagcgccgc cagctcgctg gcgagcatgc caccgagcga
     2761 ccagccgccc agccaggtgt gcggcggcag acgctcgtcc agctccaaca gccagtcgcg
     2821 cggctcgccg cgggtcagtt cgggcagcgg ttcgatttcc accttgagcg ccggatcgag
     2881 gccgcgcagg gcctcggcca acacttccag cggcaaactg cccaggcccc agcccggcag
     2941 caggatcaga tggtcacgca tcgcggctca cctgcggcca gcactcggcc aaggcgtcga
     3001 gcaggcgctc cagctgcgcc tcgctgtgcg cggcggagag ggtcacgcgc aggcgcgccc
     3061 tgccggcggg aacggttggc gggcggatgg cgccgaccag caggccgcgc tccttgagca
     3121 gcgcggagag ccgcagggcg cgctcgctgt cgccgaccag gatcggctgg atcggcgtcg
     3181 ggctgtccat caggctcagg ccgatctcgg cggcgccggt gcggaagcgc gcgatcagcg
     3241 cattcagatg ctcgcggcgc cagccttccg tgcgcagcag ctcgaggctc ttcaggctgg
     3301 cgcaggccac cgccggcggc tggctggtgg tgtagatgta ggggcgggcg aactggatca
     3361 gcgtctcgat cagttcctcg ctgccggcga cgaaggcacc ggcggtgccg aaggccttgc
     3421 ccaaggtgcc gaccagcacc ggcacatcgt ccagccccag accgaagtgc tcgacgatgc
     3481 cgccgccggt ggcgcccagc gggccgaagc cgtgggcgtc gtcgaccatc acccaggcgc
     3541 ccttgctgcg ggcttcggcg caaagagtcg gcaggtcggc caggtcgccg tccatgctga
     3601 acacgccatc ggtcaccacc agggtattgc cctcggcgcg ctccagacgc ttgctcaggc
     3661 tcaccgcgtc gttgtgcagg tagcgcgaga agcgtgcgcc ggagagcagg ccggcatcca
     3721 gcagagaggc gtggttgaga c
//
LOCUS       DATIHC010000146         1601 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_9743, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000146 DATIHC010000000
VERSION     DATIHC010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1601
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9743"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(172..1188)
                     /gene="fliG"
                     /locus_tag="VLF16_02365"
     CDS             complement(172..1188)
                     /gene="fliG"
                     /locus_tag="VLF16_02365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009433 - bacterial-type flagellum basal
                     body, C ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HSX69750.1"
                     /translation="MNDNRPATKLTKVDKAAILLLSLGETDAAQVLRHLGPKEVQKVG
                     VAMAGMRNVQRAQIEQVMGEFVEIVGDQTSLGVGSDAYIRKMLTAALGEDKAGNLIDR
                     ILLGGSTSGLDSLKWMEPRAVADVIRYEHPQIQAIVVAYLDPDQAGEVLSHFDHKVRL
                     DIILRVSSLNTVQPAALKELNQILEKQFSGSANTTRASLGGVKRAADIMNFLDSSVEG
                     QLMDSIREVDEDLSSQIEDLMFVFDNLADVDDRGIQALLREVSSDVLVLALKGADDGI
                     KEKVFKNMSKRAAELLRDDLEAKGPVRVSEVEGAQKEILTIARRMAESGEIVLGGAGG
                     EAMI"
     gene            complement(1181..>1601)
                     /locus_tag="VLF16_02370"
     CDS             complement(1181..>1601)
                     /locus_tag="VLF16_02370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar basal body M-ring protein FliF"
                     /protein_id="HSX69751.1"
                     /translation="RGDSVSVINAPFSTEAAEESIEIPFYSQPWFWDIVKQVLGVLFI
                     LVLVFGVLRPVLNNITSPSRAGGGDGADGDVELGDMGGLEGELSSDRVSLGGPQSILL
                     PSPSEGYDAQLNAIKSLVAEDPGRVAQVVKEWINADE"
BASE COUNT          258 a          531 c          506 g          306 t
ORIGIN      
        1 gtcccgccac accgtctggc gcgattttgc gcgcaacccg caggaccggg cctgtttttg
       61 cgcgatgcgg cgttactcgt cgctcatttg gaataaccaa acttctctcc tcatgccttg
      121 cctcgcgcaa caacaggctc cggcgcgacc gtgaacgaaa cgggaacagg cctagatcat
      181 cgcctcgcca ccagcgccgc cgaggacgat ctcgccggac tcggccatgc gccgggcgat
      241 ggtgaggatt tccttctgcg cgccctccac ttcgctgacg cgcaccgggc ccttggcctc
      301 gaggtcgtcg cgcagtagtt cggcggcgcg cttggacatg ttcttgaaga ccttttcctt
      361 gatgccgtcg tcggcgccct tgagtgccag taccagcacg tcggaggaca cctcgcgcag
      421 cagcgcctgg atgccgcggt cgtcgacgtc ggccaggttg tcgaagacga acatcaggtc
      481 ctcgatctgg ctggacaggt cctcgtcgac ctcgcggatg gagtccatca gctggccctc
      541 caccgagctg tcgaggaagt tcatgatgtc cgcggcacgc ttcaccccgc ccagcgaggc
      601 gcgggtggtg ttggcgctgc cggagaactg cttctcgaga atctggttga gctccttgag
      661 cgcggccggc tgcacggtgt tcagcgagga cacgcgcagg atgatgtcca ggcgcacctt
      721 gtggtcgaag tggctgagca cctcgccggc ctggtcggga tcgagatagg cgaccacgat
      781 ggcctggatc tgcgggtgct cgtaacggat cacgtcggcc acggcccgcg gctccatcca
      841 cttgaggctg tccaggccgc tggtgctgcc gccgagcagg atgcggtcga tcaggttgcc
      901 ggccttgtcc tcgcccagcg ccgcggtgag catcttgcgg atgtaggcat cggaaccgac
      961 gcccaggctg gtctggtcgc cgacgatctc gacgaactcg cccatcacct gttcgatctg
     1021 cgcacgctgc acgttgcgca tgccggccat ggcgacgccg accttctgca cttccttcgg
     1081 gccgaggtga cgcagcacct gggccgcgtc ggtctcgccg agggacagca ggaggatggc
     1141 ggctttgtcg accttggtca gcttggtggc gggacgattg tcattcatcg gcgttgatcc
     1201 actctttgac tacctgggcc acgcggcccg gatcttccgc caccaggctc ttgatggcgt
     1261 tcagttgcgc atcatacccc tcggacgggc tgggcagcag gatgctctgc ggtccgccga
     1321 ggctgacccg atcggaggac agctcgccct ccaggccacc catgtcgccc agctccacgt
     1381 caccgtcggc accgtcgccg ccacccgcgc gggacgggct ggtgatgttg ttcagcaccg
     1441 gacgcagtac accgaatacc agaaccagga tgaacagcac gcccagtacc tgtttgacga
     1501 tgtcccagaa ccagggttgc gaataaaacg gaatttcgat gctttcttcc gcggcctcgg
     1561 tggagaacgg cgcgttgatc acgctgacac tgtcaccacg g
//
LOCUS       DATIHC010000147         1822 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_44541, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000147 DATIHC010000000
VERSION     DATIHC010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1822
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44541"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..754
                     /locus_tag="VLF16_02375"
     CDS             <1..754
                     /locus_tag="VLF16_02375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HSX69752.1"
                     /translation="PQAGSDASDLRTRARRDGDHYVLSGAKQFITSGSHAGMVIVFAV
                     TDPQAGKKGISAFIVPTDTPGYSVVRVEEKLGQHASDTCQIQLDEVRIPASLRLGEEG
                     EGYRIALSNLEGGRIGIAAQSVGMARAAFEAARDYARERQTFGKPIIEHQAVAFRLAD
                     MATQIAVARQMVHHAASLREAGQPCLTEASMAKLFASEMAEKVCSAAIQTLGGYGYLK
                     DFPVERIYRDVRVCQIYEGTSDVQRMVIARSL"
     gene            complement(839..1768)
                     /locus_tag="VLF16_02380"
     CDS             complement(839..1768)
                     /locus_tag="VLF16_02380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX69753.1"
                     /translation="MNLNKVDLNLFIVFDAIYTEANLTRAGQIVGITQPAVSNALARL
                     RETFNDPLFVRTAQGMVPTPMAQNIIGPVRNALQLLRVSVQESRTFDAQRANKTYRIS
                     MTDLSEQILLPTLFQRLRRLAPAVQIESFQAKRRETTKELAAGRLDFAVDAPLNTDPQ
                     VRHVKLMEDRYVCAMRPGHPLAKDKISLDEYLSLAHIQISSRRSGLGYVDLSLGKMGL
                     QRKVTLRSQHYLMASSVLHATDMVVTVPERFARRHGLHHVDLPVSDVPSLETHLYWHE
                     STDQDPANRWMREQLIELSQQILSQERKAAEPA"
BASE COUNT          287 a          575 c          641 g          319 t
ORIGIN      
        1 gccgcaggcc ggctcggacg ccagcgacct gcgcacgcgc gcccggcgcg acggcgacca
       61 ctacgtgcta agcggcgcca agcagttcat cacctccggc agccacgccg ggatggtgat
      121 cgtgttcgcc gtgaccgatc cgcaagccgg caagaagggc atcagcgcct tcatcgtgcc
      181 gaccgacacg cccggctatt cggtggtacg ggtcgaggaa aagctcggcc agcatgcctc
      241 ggacacctgc cagatccagc tcgacgaggt gcgcattccg gcgtcattgc gcctgggcga
      301 ggagggcgag ggctaccgca tcgccctgag caacctggag ggcgggcgca tcggcatcgc
      361 cgcacagtcg gtgggcatgg cccgcgcggc gttcgaggcg gcgcgcgatt acgcacgcga
      421 gcggcagacc ttcggcaaac cgatcatcga acaccaggcc gtggccttcc gcctggccga
      481 catggccacg cagatcgccg tggcgcggca gatggtgcat cacgccgcca gcctgcgcga
      541 agccggccag ccctgcctga ccgaggcctc gatggccaag ctgttcgcct cggagatggc
      601 ggagaaggtc tgctcggcgg ccatccagac cctgggcggc tacggctatc tcaaggactt
      661 cccggtggaa cgcatctacc gcgatgtgcg cgtgtgccag atctacgagg gcaccagcga
      721 cgtgcagcgc atggtgatcg cccgcagcct ctgatctgct cttgctgtca ggcgtggttc
      781 cctggcttgc gcacggcgcg tttatcccat gaagaagggg cctttcggcc cccttttttc
      841 acgcaggctc ggcggccttg cgttcctgac tgaggatctg ctgcgacagc tcgatcaact
      901 gctcgcgcat ccagcggttg gccgggtcct ggtcggtgct ttcgtgccag tagaggtggg
      961 tctccaggga cggcacgtcg ctcaccggca ggtctacgtg atgcaggccg tggcggcggg
     1021 cgaagcgctc cggcacggtc accaccatgt cggtggcatg cagcacgctg gaggccatca
     1081 ggtagtgctg cgagcgcagg gtcaccttgc gctgcaggcc catcttgccc agcgacaggt
     1141 cgacatagcc cagcccgctg cggcggctgg agatctggat atgcgccagc gacaggtact
     1201 cgtccaggct gatcttgtcc ttggccagcg ggtggccggg gcgcatggcg cagacgtagc
     1261 ggtcttccat cagcttgacg tggcgcacct gcgggtcggt gttgagcggg gcgtcgacgg
     1321 cgaagtccag gcggccggcg gcgagctcct tggtggtctc gcggcgcttg gcctggaaac
     1381 tctcgatctg caccgccggc gccaggcggc gcaggcgctg gaacagcgtc ggcaggagga
     1441 tctgctcgga caggtcggtc atgctgatgc ggtaggtctt gttcgcccgc tgggcgtcga
     1501 aggtgcggct ctcctgcacc gaaacgcgca gcagctgcag ggcgttgcgc accgggccga
     1561 tgatgttctg cgccatcggc gtgggcacca tgccctgggc ggtgcgcacg aacagcgggt
     1621 cgttgaaggt ctcgcgcagg cgggccaggg cgttggaaac cgccggctgg gtaatgccga
     1681 cgatctgccc ggcgcgggtc aggttggcct cggtgtagat ggcgtcgaag acaatgaata
     1741 gattcagatc gaccttgttc aggttcattg ttgtgctctc tggcgtatat cggaattggc
     1801 cgatcatata tcggtgatga at
//
LOCUS       DATIHC010000148         2147 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37606, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000148 DATIHC010000000
VERSION     DATIHC010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37606"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..530
                     /locus_tag="VLF16_02385"
     CDS             <1..530
                     /locus_tag="VLF16_02385"
                     /inference="COORDINATES: protein motif:HMM:NF041518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="choice-of-anchor Q domain-containing protein"
                     /protein_id="HSX69754.1"
                     /translation="LAGNIGTEVNGVVANGLSGYLPSGMEASMQLVNVTLVANQGLGL
                     SNLGSMKVRNSIVAGNVYEAQPANCGDQGGYFLGRGFMLGAGGGSCAHDLTLDDAQLF
                     TQAMDPQVRSTGLGVENGTQYYVLIQGSPALDAGRGSCTSYDQRRMQRPRPGDQLASA
                     ECDLGAFERRLPWVE"
     gene            complement(534..>2147)
                     /locus_tag="VLF16_02390"
     CDS             complement(534..>2147)
                     /locus_tag="VLF16_02390"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HSX69755.1"
                     /translation="AAGVSIAGVPAVVAGFNGKLAWGMTLVMADNQDLFLEKVKREGG
                     RLYYMADGKWLPARERQETFFIRGQRPIRETIWETRHGPLLNSALGERKSSMQPLPFT
                     SGYGLALRSIQGETDRSIDAFFDLSRAQSVEQAFEATREVRAMALNIVFADAQHVGWQ
                     VTGRYPNRRQGTGLVPSPGWDGAYDWDGYADPMLHPYDQDPMQGWLGTANHRTVPRGY
                     GMQLSNSWFYPERAERIAQLAGAGRHDQKSMIAMQYDQTTPFAGKLQAMLDAPGMAEP
                     LNKAIAALPAAERAKAEEAHKRLMAFDGRMAATSADAALYSAFLHESARQTFLDELGP
                     ETSPAWQALVDTASNSYSAQADHLLGRDDSPFWDDVKTAQKEDKPAIMARSLAGAVTY
                     LESKLGANRSAWQWGKLHQYRWTSEATKMAPYLSASQRSGIEAISGYLDRGPYPAGGD
                     HGTLSVAAYEWGKDFNVWLIPAMRIVVDFGLQEPMIGVNSSGQSGNPASPHYADGIDA
                     WLRGGYMSFPFQSRNIDRVYGSKRLMLMP"
BASE COUNT          311 a          694 c          769 g          373 t
ORIGIN      
        1 ccctggcggg gaacatcggt acggaggtga acggtgtggt cgccaacggg ctttccggct
       61 acctgcccag cggtatggaa gcgtcgatgc agctggtcaa cgtcaccctg gtcgccaacc
      121 agggtctggg cctgagcaac ctgggcagca tgaaagtgcg caacagcatc gtcgccggca
      181 acgtctacga ggcgcagccg gccaactgcg gcgatcaggg cggctatttc ctcggtcgcg
      241 gattcatgct gggcgcgggc ggcggcagct gcgcccacga cctgacattg gacgacgccc
      301 aactgttcac ccaggccatg gacccgcagg tgcgctccac cgggttgggc gtggagaacg
      361 gcacccagta ctacgtgctg atccagggca gcccggcgct ggatgccggc agaggctcct
      421 gcacctcata cgaccagcgc aggatgcaga ggccgcgccc cggtgatcag ttggcatccg
      481 cggaatgcga cctgggcgcc ttcgagcgcc gcctgccctg ggtggagtga ggctcagggc
      541 atcagcatca ggcgcttgct gccgtagacc cggtcgatgt tgcggctctg gaacgggaag
      601 ctcatgtagc cgcccctgag ccaggcgtcg atgccatcgg cgtagtgcgg gctggccggg
      661 ttgccggact ggcccgagct gttgacgccg atcatcggct cttgcaggcc gaagtcgacg
      721 acgatgcgca tcgccgggat cagccacaca ttgaaatcct tgccccattc gtaggcagcc
      781 acgctgaggg tgccgtggtc gccgccggcc gggtagggac cgcggtccag gtagccgctt
      841 atggcttcga taccgctgcg ctgactggcg ctcaggtagg gcgccatctt ggtggcctcg
      901 ctggtccagc ggtactggtg cagcttgccc cattgccagg cgctgcgatt ggcgccgagc
      961 ttgctttcca ggtaggtgac ggcgccggcc aggctgcgcg ccatgatcgc cggcttgtct
     1021 tccttctgcg cggtcttcac gtcgtcccag aacgggctgt cgtcacggcc gagcaggtgg
     1081 tcggcctggg ccgagtagct gttgctggcg gtgtccacca gggcctgcca ggccggcgag
     1141 gtctccgggc ccagctcgtc gaggaaggtt tgtcgcgcgc tctcgtgcag gaaggcgctg
     1201 tacagcgcgg cgtcggccga ggtggcggcc atgcggccgt cgaaggccat caggcgcttg
     1261 tgcgcttcct cggccttggc acgttcggcg gcgggcagcg cggcgatggc cttgttcagt
     1321 ggctcggcca tgcccggggc gtccagcatc gcctgcagct tgccggcgaa gggcgtggtc
     1381 tggtcgtact gcatggcgat catgcttttc tggtcgtgcc ttccggcccc ggccagttgc
     1441 gcgatgcgct cggcacgctc cgggtagaac caggagttgg acagctgcat gccatagccg
     1501 cgcggcaccg tgcggtggtt ggcggtgccc agccatccct gcatcggatc ctggtcgtaa
     1561 gggtgcagca tggggtcggc atagccgtcc cagtcgtagg cgccgtccca gcccggcgac
     1621 ggcaccaggc cggtgccctg cctgcggttg gggtagcggc cggtgacctg ccagccaaca
     1681 tgctgggcat cggcgaacac gatgttgagc gccatggcgc gtacttcgcg ggtggcctca
     1741 aaggcctgct ccaccgactg cgcgcgggac agatcgaaga aggcgtcgat cgagcgatcc
     1801 gtctcgccct ggatgctgcg cagggccagg ccgtagccgc tggtgaacgg cagcggctgc
     1861 atggacgact tgcgctcgcc cagcgccgag ttgagcagcg ggccgtggcg ggtttcccag
     1921 atggtctcgc ggatcggccg ctggccgcga atgaagaagg tttcctggcg ctcgcgggcc
     1981 ggcagccact tgccgtcggc catgtaatag aggcggccgc cttcgcgttt gaccttctcc
     2041 aggaacaggt cctggttgtc ggccatgacc aaggtcatgc cccaggccag cttgccgttg
     2101 aagccggcga ccacggccgg caccccggcg atggacacgc cggcggc
//
LOCUS       DATIHC010000149         2672 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2730, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000149 DATIHC010000000
VERSION     DATIHC010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2672
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2730"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(115..348)
                     /locus_tag="VLF16_02395"
     CDS             complement(115..348)
                     /locus_tag="VLF16_02395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003240103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1127 domain-containing protein"
                     /protein_id="HSX69756.1"
                     /translation="MKNQKGYALAHSISFERVRPVIRMQAWWARLKRWQQLARERRQL
                     AMLGDEALKDLGLSRADVLRESERPFWDDPRGR"
     gene            446..1300
                     /locus_tag="VLF16_02400"
     CDS             446..1300
                     /locus_tag="VLF16_02400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HSX69757.1"
                     /translation="MAHYPSIDTELLRSFVAIADNGGFTRAAEAVNRTQSAVSMQMKR
                     LEDDVVQRTLFERDGRQVRLTPEGQVLLGYARRILKLHGEVLNTLREPHMVGAVRIGT
                     PDDYVMRFLPDILSRFAQAYPLVQVEVHCETSGQLLQRQDLDLTIVTREPGKEIGQLL
                     RQERFVWAEAQGFTPHEQNPMPLAMFNSGCFCRAWACNALDAMERPYRIAYTSPSLSA
                     IFAVVGAGLAVTAQLRSLITPDMRILGEAEGLPTLPMTSIVLLRHPQRQSQVIDTLAE
                     HIAEGFRL"
     gene            complement(1361..2116)
                     /locus_tag="VLF16_02405"
     CDS             complement(1361..2116)
                     /locus_tag="VLF16_02405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HSX69758.1"
                     /translation="MSLIDLLLNLLLGLAMGTVGGLFGIGGGLVAIPALGVLFGLDQQ
                     LAQGTALVMVVPNVVLALWRYNQRNRIEPKHALLLSVTGFCCAWLASLYAVELQAERM
                     RMAFVGFLVVLAIYNLARLFMRNAPASAQLRHPWPWLGVVGSAAGALGGMFGVGGAVL
                     AVPVLTNIFGVGQLAAQGLSLALALPSTGVTLLTYAVHDHVDWSMGIPLAVGGLLSIS
                     WGVKLAHAMPEKVLRGLFCGFLVICAVLLALRG"
     gene            2215..>2672
                     /locus_tag="VLF16_02410"
     CDS             2215..>2672
                     /locus_tag="VLF16_02410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014861690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX69759.1"
                     /translation="MNSDALELYLDVLDTGSFSAAARRQQLTPSSVARRVDALERALG
                     CALVVRSTHAVRATPAGLAFAERARRILAELRQARAEAVALSSAPEGLIRIDAPAPFG
                     RRHLAPAIAEFLTAYPGLDVQLRLIDSFVDLQGEHLGEVDLVLRIGPLADT"
BASE COUNT          453 a          981 c          832 g          406 t
ORIGIN      
        1 aatcaaccat atcgggcgac tccagcggcg ccttcatgct ggcgatattg agctgggcca
       61 ggtggtagcg ggacatcgga actccttgtc ttttgagcgg gattcgtcgg cgcttcagcg
      121 cccgcgcggg tcgtcccaga acggccgctc gctctcgcgc agcacgtcgg cgcggctcag
      181 gccgaggtcc ttgagcgcct catcgccgag catcgccagc tgccgccttt cacgtgccag
      241 ctgctgccag cgcttgagcc gtgcccacca cgcctgcatg cgaatgaccg gccgtacccg
      301 ttcgaaggat atcgagtggg ccagtgcata ccctttctga tttttcatct tcacgccctc
      361 cctgtggggt tggcgccagt ttccgttcgc gcttaagatc aaaccaacga atgtttctta
      421 tacgacgcat cttggagatt gatgaatggc gcactacccc agcatcgaca ccgaattgct
      481 gcgcagcttc gtcgccatcg ccgataacgg cggcttcacc cgcgccgcgg aggcggtcaa
      541 ccgtactcaa tcggcggtca gcatgcagat gaagcggctg gaagacgacg tggtgcagcg
      601 caccctgttc gagcgcgacg gccgccaggt gcgcctcacg cccgagggcc aggtgctgct
      661 gggctacgcg cggcgcatcc tcaagctgca tggcgaggtg ctcaatacat tgcgtgagcc
      721 acacatggtc ggcgccgtgc gcatcggcac gccggacgac tacgtgatgc gctttctgcc
      781 ggacatcctc tcgcgcttcg cccaggccta cccgctggta caggtggaag tgcattgcga
      841 gacttccggg caattgctgc aacgccagga cctggacctg accatcgtca cccgcgagcc
      901 gggcaaggag atcggccagc tgctgcgcca ggagcgcttc gtctgggccg aggcccaggg
      961 cttcacgccg cacgagcaga accccatgcc gctggccatg ttcaactctg ggtgcttctg
     1021 ccgcgcctgg gcctgcaatg cgctggacgc catggaacgg ccctaccgca tcgcctacac
     1081 cagccccagc ctgtcggcga tcttcgccgt ggtcggcgct ggcctagcgg tcaccgccca
     1141 gttgcgcagc ctgatcaccc cggacatgcg catcctcggc gaggccgagg gcctgcccac
     1201 gctgccgatg accagcatcg tgctgctgcg ccacccgcag cgccagtcgc aggtgatcga
     1261 caccctggcc gagcacatcg ccgaaggctt ccgcctctga gttgcccgcc gacctcaccg
     1321 tagggtgcgc catgcgcacc gcccgcggcg ccgcagaacg ctacccccgc aacgccagca
     1381 acaccgcgca gataaccaga aagccgcaga acagcccgcg cagcaccttc tcgggcatcg
     1441 cgtgggccag cttcacgccc cagctgatgc tgagcagccc gcccaccgcc agcgggatgc
     1501 ccatgctcca gtcgacgtga tcgtgcacgg cgtaggtcag cagcgtcacg ccggtactcg
     1561 gcagggccag ggccagcgac agcccttggg ccgcgagctg gccgacgccg aagatgttgg
     1621 tcagcaccgg caccgccagc accgcgccgc cgacgccgaa catgccgccc agcgcgcccg
     1681 ccgcgctacc caccaccccc agccacggcc aggggtggcg cagctgcgcc gacgccggtg
     1741 cattgcgcat gaacaaccgg gctaggttgt agatcgccag cacgacgagg aagccgacga
     1801 aggccatgcg catgcgctct gcctgcagct ccacggcgta gagcgaggcc agccaggcgc
     1861 agcaaaagcc cgtcacgctg agcagcagcg catgcttggg ctcgatgcgg ttgcgctggt
     1921 tgtagcgcca cagcgccagc accacattcg gcaccaccat caccaacgcc gtgccctggg
     1981 ccagttgctg gtccaggccg aagagcacgc ccagggcggg aatcgccacc agcccgccac
     2041 cgattccgaa caggccaccg acggtgccca tggccaggcc cagcagcagg ttcaacaaca
     2101 gatcgatcag gctcatgggc tctccttcag ggtggcggca tgctagccgg ccgcggctgg
     2161 cggggaaacg cacagcagcg cacaatggct ttgcgattta cgcaaaggca ttccatgaac
     2221 tccgacgccc tcgaactcta cctggacgtg ctcgacaccg gcagcttctc cgccgcggcg
     2281 cggcgccagc agctcacgcc ctcctccgtc gcgcgccgcg tcgatgcgct ggagcgcgcc
     2341 ctgggctgcg ccctggtggt ccgcagcacc catgccgtgc gcgccactcc ggcaggcctg
     2401 gcattcgccg aacgggcccg gcgcatcctc gccgaattgc gccaggcccg cgccgaggca
     2461 gtggcgctga gcagcgcgcc ggaaggactg atccgcatcg acgcgcccgc gcctttcggc
     2521 cgccggcacc tggcgcccgc catcgccgag ttcctcaccg cctatcccgg gctggacgtg
     2581 cagctgcggc tgatcgacag cttcgtcgac ctgcagggcg aacacctggg cgaggtggac
     2641 ctggtgctgc gcatcggccc actggccgac ac
//
LOCUS       DATIHC010000150         2756 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30760, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000150 DATIHC010000000
VERSION     DATIHC010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2756)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2756)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2756
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30760"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            121..1548
                     /gene="leuC"
                     /locus_tag="VLF16_02415"
     CDS             121..1548
                     /gene="leuC"
                     /locus_tag="VLF16_02415"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014852276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HSX69760.1"
                     /translation="MAGKTLYDKLWEMHEVKRRDDGSSLIYIDRHILHEVTSPQAFEG
                     LRLAGRKPWRIDANIATPDHNVPTTRAERQGGLEAIADEVSRIQVKTLDENCDDFGIL
                     EFKMNDVRQGIVHVVGPEQGATLPGMTVVCGDSHTSTHGAFGALAHGIGTSEVEHVLA
                     TQCLVAKKMKNMQVRVEGQLPFGVTAKDIVLAVIGKIGTAGGNGHALEFAGSAIRDLS
                     LEGRMTICNMSIEAGARVGMVAVDEKTIDYVRNRPFAPKGSDWDAAVAQWRDLVSDAD
                     AHFDTIVELRAEDIKPQVSWGTSPEMVLAVDQNVPDPAVEADPVKRDSIVRALKYMGL
                     TANQAITDIQLDRVFIGSCTNSRIEDLRAAAEVAKGRKVAATVKQALVVPGSGLVKAQ
                     AEQEGLDKIFIEAGFEWREPGCSMCLAMNPDKLGSGEHCASTSNRNFEGRQGAGGRTH
                     LVSPAMAAAAAVTGRFVDVRELIQA"
     gene            1560..2207
                     /gene="leuD"
                     /locus_tag="VLF16_02420"
     CDS             1560..2207
                     /gene="leuD"
                     /locus_tag="VLF16_02420"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012701956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HSX69761.1"
                     /translation="MKAFTQHTGLVCPLDRANVDTDQIIPKQFLKSIKRTGFGPNLFD
                     EWRYLDVGQPNQDNSKRPINQDFVLNFPRYQGASVLLARENFGCGSSREHAPWALDEY
                     GFRTVIAPSFADIFFNNSFKNGLLPIILKDEEVDELFQQAEATEGYQLTVDLAAQTVT
                     RPDGKQYAFEVDAFRKHCLLNGLDDIGLTLQDQEAIRAFENTYRQSSPWLFGAIK"
     gene            2301..>2756
                     /locus_tag="VLF16_02425"
     CDS             2301..>2756
                     /locus_tag="VLF16_02425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HSX69762.1"
                     /translation="MSKQILVLPGDGIGPEIMAEAVKVLNLANDKYALGFELSFDDLG
                     GAAIDRYGVPLADETLDRARAADAVLLGAVGGPKWDTIDPAIRPERGLLKIRSQLGLF
                     GNLRPAILYPQLAEASSLKPEVVAGLDILIVRELTGGIYFGQPRESKVLD"
BASE COUNT          532 a          928 c          860 g          436 t
ORIGIN      
        1 ggaatgcttg gaataaaaaa tatgaattgg agttattcga gccgaatccc taggatcgcc
       61 ccatcagcag aagggttata agccctcagc acgcacatga cctgatcgag gacatagcag
      121 atggccggca agacgctcta cgacaagctc tgggaaatgc acgaggtgaa gcgccgcgac
      181 gacggctcgt cgctgatcta catcgaccgt cacatcctcc acgaagtgac ctcgccccag
      241 gccttcgagg gcctgcgtct ggccggccgc aagccgtggc gcatcgacgc caacatcgct
      301 acaccggacc acaacgtgcc gaccacccgt gccgaacgcc agggcggcct cgaggcgatc
      361 gccgacgaag tctcgcgcat ccaggtgaag accctggacg agaactgcga cgacttcggt
      421 atcctcgaat tcaagatgaa cgacgtgcgc cagggcatcg tccacgtggt cggcccggag
      481 cagggcgcca ccctgccggg catgaccgtg gtctgcggcg actcgcacac ctccacccat
      541 ggcgccttcg gtgcgctggc ccatggcatc gggacctccg aggtcgagca tgtgctcgcc
      601 acccagtgcc tggtggccaa gaagatgaag aacatgcagg tgcgcgtcga gggccagctg
      661 ccgttcggcg tcactgccaa ggacatcgtc ctcgccgtga tcggcaagat cggcaccgcg
      721 ggcggcaatg gccatgccct ggagttcgcc ggcagcgcca tccgtgacct gtcgctggaa
      781 ggccgcatga ccatctgcaa catgtccatc gaggccggtg cccgcgtggg catggtggcg
      841 gtggacgaga agaccatcga ctacgtacgc aaccgtccgt tcgcgcccaa gggcagcgac
      901 tgggatgccg ccgtggcgca gtggcgcgat ctggtgtcgg acgccgacgc gcacttcgac
      961 accatcgtcg agctgcgtgc cgaggacatc aagccgcagg tcagctgggg cacttcgccg
     1021 gagatggtcc tggccgtcga ccagaacgtg ccggacccgg ccgtcgaggc cgatccggtc
     1081 aagcgcgact ccatcgtacg cgccctcaag tacatgggcc tgactgccaa ccaggcgatc
     1141 accgatatcc agctggaccg cgtgttcatc ggctcctgca ccaactcgcg catcgaagac
     1201 ctgcgcgccg ccgccgaagt ggccaagggc cgcaaggtcg ccgccaccgt caagcaggcg
     1261 ctggtggtgc cgggctccgg cctggtcaag gcgcaggccg agcaggaagg cctggacaag
     1321 atcttcatcg aggccggctt cgaatggcgt gaaccgggct gctccatgtg cctggcgatg
     1381 aacccggaca agctgggcag tggtgagcat tgcgcctcga cctccaaccg caacttcgag
     1441 ggccgtcagg gcgccggtgg ccgtacccat ctggtcagcc cggccatggc tgccgcggcc
     1501 gcggtgaccg gtcgtttcgt cgacgtgcgc gaactgatcc aggcctgagg agtagataga
     1561 tgaaagcctt cacccaacac accggcctgg tctgcccgct cgatcgcgcc aatgtcgaca
     1621 ccgaccagat catccccaag caattcctca agtcgatcaa gcgcaccggc ttcggcccca
     1681 acctgttcga cgagtggcgc tacctggatg tcggtcagcc gaaccaggac aactccaagc
     1741 gcccgatcaa ccaggacttc gtgctcaact tcccgcgcta ccagggcgcc agcgtgctgc
     1801 tggcccgcga gaacttcggt tgcggctcct cccgcgagca cgcgccctgg gcgctggacg
     1861 aatacggctt ccgcaccgtg atcgcgccga gcttcgccga catcttcttc aacaacagct
     1921 tcaagaacgg cctgctgccg atcatcctga aggacgagga agtagacgaa ctgttccagc
     1981 aggccgaggc caccgagggt taccagctga ccgtcgacct cgccgcgcag accgtgaccc
     2041 gtccggatgg caagcagtac gccttcgagg tcgacgcctt ccgcaagcac tgcctactca
     2101 atggcctcga cgacatcggt ctgaccctgc aggaccagga ggcgatcagg gctttcgaga
     2161 acacctaccg gcagagcagc ccctggttgt tcggcgcgat caagtgatgt agggcggaaa
     2221 accgcgcagc gttttccgcc accggattcg gtggataagg cctgcggccg ttatccaccc
     2281 tacagaaaat gaggaatgca atgagcaaac agattctggt tctccctggc gacggcatcg
     2341 gcccggagat catggccgag gcggtcaagg tgctgaacct ggccaacgac aagtacgcgc
     2401 tgggcttcga gctctccttc gatgacctgg gtggcgccgc catcgaccgc tacggcgtgc
     2461 cgctggccga cgaaaccctg gatcgcgccc gcgccgccga tgcggtgctg ctcggcgccg
     2521 tcggcgggcc gaagtgggac accatcgatc cggccatccg cccggagcgc ggtctgctga
     2581 agatccgctc gcaactgggc ctgttcggca acctgcgccc ggccatcctc tatccgcaac
     2641 tggccgaggc ctccagcctc aagccggaag tggtggcggg cctggacatc ctcatcgttc
     2701 gcgagctgac cggcggcatc tacttcggcc agccgcgcga gagcaaggtg ctggat
//
LOCUS       DATIHC010000151         2596 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33113, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000151 DATIHC010000000
VERSION     DATIHC010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2596
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33113"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            83..159
                     /locus_tag="VLF16_02430"
     tRNA            83..159
                     /locus_tag="VLF16_02430"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:117..119,aa:Asp,seq:gtc)
     gene            368..1081
                     /locus_tag="VLF16_02435"
     CDS             368..1081
                     /locus_tag="VLF16_02435"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020289238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HSX69763.1"
                     /translation="MKQHRLAAAVALVGLVLAGCDAQTSEVELKTPAQKASYGIGLNM
                     GKSLSQEGLADLDSKAVAMGIEDAIGKKEQKLKDEELAEAFAFLQKRAEERMAKLNEE
                     SAQAGKKFLEENGKKDGVVTTASGLQYEVIKKADGAQPKATDVVTVHYEGKLTDGTVF
                     DSSIERGSPIDLPVSGVIPGWVEGLQLMHVGEKYKLYIPSELAYGAQSPSPAIPANSV
                     LVFELELLGIKDPAAAPAQ"
     gene            1436..1867
                     /locus_tag="VLF16_02440"
     CDS             1436..1867
                     /locus_tag="VLF16_02440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013790823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1232 domain-containing protein"
                     /protein_id="HSX69764.1"
                     /translation="MNFPWNNTRYLRLAQRVLARGRLPSLLMAVARKGEGGDRFARLR
                     GDLRLLQGLCAAWWRGEYRAISSQALVSVVAALVYFLVPLDMVPDWLLGVGLLDDLAV
                     LAWVLRTWDGELAAYRAWREAQAPEVLQRVEALPPADRSAD"
     gene            2054..2374
                     /locus_tag="VLF16_02445"
     CDS             2054..2374
                     /locus_tag="VLF16_02445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017244646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HSX69765.1"
                     /translation="MSVQVIMRDGEAEYAVLPWADYQALLEAAGRAPAAAVPQAPQTR
                     SGLGQLASLREAKGLSQADLARTVGISPHYLNLIETGEREPDGAILRSLARVLEVGEW
                     EQPS"
     gene            2371..>2596
                     /locus_tag="VLF16_02450"
     CDS             2371..>2596
                     /locus_tag="VLF16_02450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017677917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69766.1"
                     /translation="MSVRIHRQHWQALLGELEDARRQRHLLTYRALVERLQLPSPAMQ
                     TLTAALEHLAALDARAERPLRSALVISQGAS"
BASE COUNT          453 a          800 c          866 g          477 t
ORIGIN      
        1 gccgggagag catctgcctt acaagcagag ggtcggcggt tcgatcccgt catcacccac
       61 catctcgctc aagaggttac gcgcagcggt agttcagtcg gttagaatac cggcctgtca
      121 cgccgggggt cgcgggttcg agtcccgtcc gctgcgccat acataaagcc ttggttagac
      181 tgaagaccgg ggcttgaaga aaacgaccga gaggtcgttt ttttttgccc gcgtttttcc
      241 cgccgcattc cccgcccggc tgaacttatc cgcattccgc cgttcctaca gtgccgtagc
      301 cagtgctcgc cgcaggctgc taagctcgcg ctctcttttg ccctcgtggc ctctacaagg
      361 aacaagcatg aaacaacatc gtcttgcggc ggcggttgcc ctggtcggcc tggtgctggc
      421 cggttgcgat gcgcagacca gcgaagtgga actcaagacg ccggcgcaga aggcttccta
      481 tggcatcggc ctgaacatgg gcaagagcct gtcccaggaa ggcctggccg atctggattc
      541 caaggccgtg gccatgggca tcgaagacgc catcggcaag aaggagcaga agctgaagga
      601 cgaagagctg gccgaggcct tcgccttcct gcagaagcgc gcggaagagc gcatggccaa
      661 gctcaacgag gaatcggctc aggccggcaa gaaattcctc gaggagaacg gcaagaagga
      721 cggcgtggtc actaccgcct ccggcctgca gtacgaagtg atcaagaagg ccgacggcgc
      781 gcagccgaag gccaccgacg tggtgaccgt tcactacgaa ggcaagctga ccgacggcac
      841 cgtgttcgac agttccatcg agcgtggcag ccccatcgat ctgccggtca gcggcgtgat
      901 cccgggttgg gtcgagggcc tgcaactgat gcacgtgggc gagaagtaca agctgtacat
      961 ccccagcgag ctggcctacg gcgcccagag cccgagcccg gcgatcccgg ccaactcggt
     1021 actggtgttc gagctcgagc tgctcggcat caaggacccg gccgccgcgc ccgcgcagta
     1081 acacctgccg tcatgcaaaa acgccccgcc agccggggcg ttttcatttg cagaaccggc
     1141 aggcgacccg ccggtctgaa catgagggat gacggaggtg gtgttacggt tatgcacatt
     1201 gtttccggtt actcccagcg tgcgcggtgt tacacctttc ctgagcaatg ctcaatagat
     1261 aactggctga tttatatggt tttttatcct tgagcaaaaa gtgcccgatc tgtagcgagg
     1321 ccgcgtggta cgggcgtttg atcgagtcat caaacaactg ttcacagggt tatccacagc
     1381 attggtggat aaccgattgc agcccagcag gcatgggcct cgtggagttc gagtcatgaa
     1441 ttttccctgg aacaacaccc gttaccttcg tctggcgcag cgcgttctgg ctcgcggacg
     1501 actgccttcg ttgctgatgg ctgtcgcccg taagggggag gggggcgacc gttttgcccg
     1561 cctgcgcggc gatctgcgtc tgctgcaggg gctgtgcgcc gcctggtggc gcggtgagta
     1621 ccgggcgatc agtagtcagg cgctggtctc ggtcgtcgcg gcgctggtgt acttcctggt
     1681 gccgttggac atggtgccgg actggctgct cggcgttggc ctgctcgacg atcttgcggt
     1741 attggcttgg gtgctgcgga cctgggacgg cgagctcgca gcctatcgcg cctggcgcga
     1801 ggcgcaggcg ccggaggtgc tgcagcgcgt ggaggccttg ccgccggcgg atcggagcgc
     1861 cgactgaatt cgccctcgcg cgggcggcat atgtgcccgt cgcagctctc ctgagatcca
     1921 tcatcccttg ccgcgctgcc gactcttgtc tgacagggca cgataggtca cgctctggcg
     1981 ctgaccggat tgttaagatg agcacctgca aggaagtgcc gagcgtgtcg gcactgctct
     2041 acggagagct gtaatgagtg ttcaagtgat catgcgcgat ggcgaggccg agtacgcggt
     2101 gttgccttgg gcggactacc aggccttgct cgaagctgcc ggccgggcgc ccgccgcggc
     2161 agtaccacag gccccgcaaa cccgttccgg gctcggccag ctggccagcc tgcgcgaagc
     2221 caagggcctg tcccaggccg atctggcgcg caccgtgggc atcagcccgc attatctgaa
     2281 cctgatcgag accggcgagc gcgagcccga cggtgccatc ctgcgttcgc tggcgcgggt
     2341 gctggaggtg ggcgagtggg agcagccgtc gtgagcgtgc gcatccaccg ccagcactgg
     2401 caggcgctgc tcggcgagct ggaggatgcc cgccgccagc ggcacctgct gacctaccgt
     2461 gcgctggtcg agcgcctgca attgccgagc ccggcgatgc agacgctcac cgcggcgctg
     2521 gagcatctgg ccgcattgga cgcacgcgcc gagcgcccgt tgcgcagcgc gctggtgatc
     2581 agccagggcg cgagcc
//
LOCUS       DATIHC010000152         2404 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5221, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000152 DATIHC010000000
VERSION     DATIHC010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2404)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2404
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5221"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            6..1121
                     /locus_tag="VLF16_02455"
     CDS             6..1121
                     /locus_tag="VLF16_02455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSX69767.1"
                     /translation="MQRFGRDLWGRKPVSEVMNPAPLVVSLDTSLEEAARQITAQLQS
                     PIRDDFVLVDKQGLYQGLGTVLDLLKAMEHRVAQRNRVLRKALVDLKESQTQLVQSEK
                     MASLGQMVAGVAHELNTPLGYVKNNVQLLRELTRPLLELADAQAALGDCLADPACAED
                     DLARALEEAGRLRELAAPELLAEDLEQLFADTGYGLQQIGELVVGLKDFARLDRAMSE
                     EIDLNDCIRSALVIARNSIKDKAEVHQQLGELPRIACAPSQINQVLLNLLTNAAQAME
                     GFGRIQVKSWSENGQVLISVQDNGCGMPREVLERIFDPFYTTKPVGQGTGLGLSISFK
                     IIQDHGGNIRVVSEPGRGTRFLISLPCSGAEDLKRSA"
     gene            1124..2041
                     /locus_tag="VLF16_02460"
     CDS             1124..2041
                     /locus_tag="VLF16_02460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX69768.1"
                     /translation="MSQPIRVMFVDDEERILRSLALQFRRDYEVLVESDPRRALERLK
                     SEPVHVLVSDQRMPQMSGSELLAQAAELQPNAVRILLTGYSDLDAAIEALNSGGIFRY
                     LTKPWEPQEMAATLRQAGEIAALRQRQATPAAPRPVSTEGLNLLLLDADPLTLECVGA
                     FCSEGGHRLLRADNLSEALRQLNEERVDLLVSDLKLDGADTAPLLKSLAQAHPRLLSL
                     VVTPFRDTQALLALINEAQIFRYLPKPIRKGMFDKGLRAAAEQALLYRAQPEQVVTRL
                     ADAPRSQPERERVGSLLGMLGRLRERLSA"
     gene            2075..2269
                     /locus_tag="VLF16_02465"
     CDS             2075..2269
                     /locus_tag="VLF16_02465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69769.1"
                     /translation="MNITLIETGDKGWVVKLAGCDVPFRSQADAGLFVERLQQRLEAP
                     HELPPLDGHLPVTQEAEHRP"
BASE COUNT          417 a          816 c          806 g          365 t
ORIGIN      
        1 tcttcatgca gcgcttcggc cgcgacctgt ggggccgcaa gccggtcagc gaggtgatga
       61 atcccgcgcc gctggtggtg agcctggaca ccagcctgga agaggcggcg cggcagatca
      121 ccgcccagct gcagtcgccg atccgtgacg atttcgtgct ggtggataag cagggcctgt
      181 accagggcct gggcacggtg ctcgacctgc tcaaggccat ggagcaccgg gtggcgcagc
      241 gcaatcgcgt gctgcgcaag gcgctggtgg acctgaagga atcgcagacg cagctggtgc
      301 agtcggaaaa gatggcctcg ctcgggcaga tggtcgccgg cgtcgcccac gagctgaaca
      361 ccccgctggg ctatgtgaag aacaacgtgc agctgctgcg cgagctgacc cggccgctgc
      421 tcgagctggc cgatgcccag gcggcgctgg gtgactgcct ggccgatccg gcctgcgccg
      481 aggacgacct ggcgcgtgcc ctcgaggagg ccggcaggct gcgcgaactg gccgcaccgg
      541 agctgctggc cgaggacctc gagcagctgt tcgcggacac cggctacggc ctgcagcaga
      601 ttggcgagct ggtcgtcggc ctcaaggatt tcgcccgcct ggaccgggcg atgagcgagg
      661 agatcgacct caacgactgc atccgcagcg cgctggtgat cgcccgcaac agcatcaagg
      721 acaaggccga ggtgcaccag cagctcggcg aactgccgcg catcgcctgc gcgccctcgc
      781 agatcaacca ggtgctgctc aacctgctga ccaacgccgc ccaggccatg gaaggcttcg
      841 gccgcatcca ggtgaagagc tggagcgaga acggccaggt gctgatctcg gtgcaggata
      901 acggctgcgg catgccgcgc gaggtgctgg agcgcatctt cgacccgttc tacaccacca
      961 agccggtcgg gcagggcacc ggcctgggcc tgtccatcag cttcaagatc atccaggacc
     1021 acggcggcaa catccgtgtg gtttccgagc cggggcgcgg cacgcgcttc ctcatcagcc
     1081 tgccgtgcag cggcgctgaa gacctgaaaa ggagcgcatg aacatgagcc aaccgatccg
     1141 cgtgatgttc gtcgacgacg aggaacgcat cctgcgcagc ctggcgctgc agttccgtcg
     1201 tgactacgag gtgctggtgg agagcgatcc gcggcgggcg ctggagcgcc tgaagagcga
     1261 gccggtgcac gtgctggtca gcgaccagcg catgccgcag atgagcggct ccgaactgct
     1321 ggcccaggcc gccgagctgc aaccgaatgc cgtgcgcatt ctcctcaccg gttattccga
     1381 cctggacgcg gccatcgagg cgctgaacag cggtggcatc ttccgctacc tgaccaagcc
     1441 ctgggagccc caggaaatgg ccgccaccct gcgccaggcc ggcgagatcg ccgcgctgcg
     1501 ccagcgccag gcgacacctg cggcaccgcg cccggtcagc accgaggggc tcaatctgtt
     1561 gctgctcgat gccgacccgc tgaccctgga atgcgtcggc gccttctgca gcgagggcgg
     1621 ccaccgcctg ctgcgcgccg acaacctgag cgaagcgctg cgccagctca acgaggaacg
     1681 cgtcgacctg ctggtcagtg acctcaaact cgacggagcg gacaccgcgc cgctgctcaa
     1741 gtcgctggcg caggcgcatc cgcggttgct cagcctggtg gtcacgcctt tccgcgacac
     1801 ccaggcactg ctggcgctga tcaacgaggc gcagatcttc cgctacctgc ccaagccgat
     1861 ccgcaagggc atgttcgaca agggcctgcg cgccgcggcc gagcaggcgc tgctctaccg
     1921 cgcgcaaccg gagcaggtgg tgacccgcct ggccgatgcg ccgcgttcgc agccggagcg
     1981 cgagcgggtc ggcagcctgc tgggcatgct tggtcgcctg cgcgagcggc tcagcgcctg
     2041 acgtttgaat cacttcatcg aggatcgaat ccgcatgaac atcaccctga tcgaaaccgg
     2101 cgacaagggc tgggtcgtca agctggccgg ctgcgacgtg cctttccgct cccaggccga
     2161 tgcgggcctg ttcgtcgaac gcctgcagca gcgcctggag gcgccccacg aattgccgcc
     2221 gctcgacggt catcttcctg tcacacaaga agcggagcat cgcccctgac tcaggtgctg
     2281 cttcgagcaa caacctctcc tgccgcgatc atcgcggctt tttttgcccc tgtaacggcg
     2341 ccgcggcatg gtgctgctag agcaattgct ctagattcgc cacaaagcag ccgcggagca
     2401 gggc
//
LOCUS       DATIHC010000153         3739 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21188, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000153 DATIHC010000000
VERSION     DATIHC010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3739
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21188"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..610)
                     /locus_tag="VLF16_02470"
     CDS             complement(<1..610)
                     /locus_tag="VLF16_02470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009048372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HSX69770.1"
                     /translation="MDLQQGFVLTRHWHDTPAGTEVEYWLASDAGPRRLRLPPQTSVA
                     FVPAVQRERAEALLRGEREVELRPLGLRDFRQRPVLGLYCRSQRQLIKLDKQLRQAGV
                     DVYEADIRPPERFLMERFITAPVWFAGTPDERGTLLDGRMKPNEAYRPKLRLVSLDIE
                     TSERGELYCIGLEGCGQRQVYMLGEAPEVAPEVDFDLAYCASR"
     gene            complement(679..1206)
                     /locus_tag="VLF16_02475"
     CDS             complement(679..1206)
                     /locus_tag="VLF16_02475"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HSX69771.1"
                     /translation="MSTPISARGDLIDTPLGTLIALVDAEGALQRLEFLDDAHCEPLV
                     WRGLALQRDAAAVAPVARQLGEYFAGQRRVFDLPLAPLGNAFLHEAWHHLRQVPYGTT
                     LSYGALALKLQRNTSARAVGRANAVNPIAIIVPCHRIIGADGKLTGYAGGLHRKQALL
                     ELEGVLTPARQQSLL"
     gene            complement(1268..2017)
                     /locus_tag="VLF16_02480"
     CDS             complement(1268..2017)
                     /locus_tag="VLF16_02480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69772.1"
                     /translation="MPAPLRVLIVSLCLLFAPSAPGAEAVREYRLGVEDVDYYPIYSA
                     APPDWHYRGYAREVLDLFAAKEGLRLTYVVLPVRRLLREYRGGRLDLVFPDNPRWEAE
                     HKPEGIAYSRPLLQFQDAMLVLPSRLGEPRERFRRLGFVRGFTPWKFREDIAAGRVTI
                     HEAPNPEGLIRMTLAGYIDAANMARQVARFHLARQGRPDSLVIEPTLLPLRDSHYHLS
                     SIRHPELIRRFDAFLQREAEAVQALRSKYGL"
     gene            2124..>3739
                     /locus_tag="VLF16_02485"
     CDS             2124..>3739
                     /locus_tag="VLF16_02485"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012314057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8/S53 family peptidase"
                     /protein_id="HSX69773.1"
                     /translation="MLARVALPLLLLLAPLAQAEEPLRITQLQRCGDLLADNPEYCLR
                     ATGLAEGELRVHLGDKALGAQRVHREGSRLRLNLDQGPGAPLWLQQGERRSNPVWLSR
                     GRSQVVAAGPDEVAKNMDGLTTYLDLVGLLIEEKHDGREEAERLAAKYGAKVVGAIAP
                     LNVFQLRLPAKDLMQRDALLLRLGSEASVDAVIVEESAPEKGEEGERQEVPREPSDDE
                     WAANRFADAVNYYRRRVPAKQAPIPTTPVRIGVIERNVDFDAPDFADYLGDCRPQRRT
                     CLYARDADKPDNHGSTVAGILAAHHRRGGNSGFLQALDDAGPGFEVIVERNSDAGIIA
                     NVAASVNLVEDGARVLNWSWGIHRVGAKNVEGDEVDSLIRSGLAMSGYEELLEEFFLW
                     LRREHPDVVVINSAGNGAAFSGTDEYRLPSSFITDQLLVVGGHQRSQKSGVGVDDPEY
                     VIKRSSSNIDMRVDITASACAHASTLGEGERGEAHCGTSYATPMVTGVVAAMLSINPE
                     LQPDQLRMLLRRSAMTIGGDYDFEPMDAEDL"
BASE COUNT          583 a         1299 c         1353 g          504 t
ORIGIN      
        1 cgcggctggc gcagtaggcc aggtcgaagt cgacctccgg ggccacctcc ggcgcctcgc
       61 cgagcatgta cacctggcgc tggccgcagc cctccaggcc gatgcagtac agctcgccgc
      121 gctcgctggt ctcgatgtcc agcgacacca ggcgcagctt cggccgatag gcctcgttgg
      181 gcttcatccg cccgtcgagc agcgtgccgc gctcgtccgg cgtaccggcg aaccacaccg
      241 gcgcggtgat gaaacgctcc atgaggaagc gctccggcgg acggatgtcg gcctcgtaga
      301 cgtcgacgcc ggcctggcgc agctgcttgt ccagcttgat cagctggcgc tgggagcggc
      361 agtacaggcc cagcaccgga cgctggcgga agtcgcgcag gcccagcggg cgcagctcca
      421 cctcgcgctc gccgcgcagc agcgcctcgg cacgctcgcg ctgcacggcg gggacgaagg
      481 ccaccgatgt ctgcggcggc aggcgcaggc gccgcgggcc ggcatcgctg gccagccagt
      541 actcgacttc ggtgccggcg ggtgtgtcgt gccagtggcg ggtcaggacg aagccctgtt
      601 gcagatccac gcggtcgttc cggaaaagac gttatggtcc gcgattctac tggggccggg
      661 gtcgccgcgt ccggtcctct acagcagcga ctgctggcgc gccggcgtca gcacgccctc
      721 cagctccagc agcgcctgct tgcggtgcag gccgccggca tagccggtga gcttgccgtc
      781 ggcgccgatg atgcggtggc agggcacgat gatggcgatg gggttgaccg cgttggccct
      841 tccgacggcg cgggccgagg tgttgcgctg cagcttcagg gccagggcgc cgtaactcag
      901 ggtggtgccg tagggcacct ggcgcaggtg gtgccaggcc tcgtgcagga aggcattgcc
      961 gagcggcgcc agcggcaggt cgaagacccg gcgctgaccg gcgaagtact cgcccaactg
     1021 gcgggcgacg ggcgccacgg cggccgcgtc gcgctgcagc gccaggccgc gccagaccag
     1081 cggctcgcaa tgcgcgtcgt cgaggaactc caggcgctgc agggcgccct cggcgtccac
     1141 cagggcgatc agggtgccca gtggcgtatc gatcagatcg ccgcgtgccg atatcggtgt
     1201 gctcatgggg ctctccttgg caacgggccg ggtgccgact atcgcgccgc cgtcggcgcc
     1261 gatcaagtca caggccgtac ttgctccgca gcgcctgcac ggcctcggcc tcgcgctgca
     1321 gaaaggcatc gaagcggcgg atcaactcgg gatggcgaat gctggagagg tgatagtggc
     1381 tgtcgcgcag cggcagcagc gtcggctcga tcaccaggct gtcgggcctg ccctggcgcg
     1441 cgaggtggaa acgggcgacc tgccgggcca tgttggcggc gtcgatgtaa ccggccaggg
     1501 tcatgcggat cagcccctcc gggttcggcg cctcgtgaat cgtcacccgc ccggcggcga
     1561 tatcctcgcg gaacttccac ggcgtgaatc cgcggacgaa ccccagccgc cgaaagcgct
     1621 cgcgcggctc gcccagccgc gagggcagca ccagcatggc gtcctggaac tgcagcagcg
     1681 gccgcgaata ggcgatgccc tcgggcttgt gctcggcctc ccagcgcggg ttgtcgggaa
     1741 acaccaggtc cagccgcccg ccccggtact cgcgcaacaa ccggcgcacc ggcagcacca
     1801 cataggtcag gcgcagcccc tccttggcgg cgaacaggtc cagcacctcg cgggcatagc
     1861 cgcggtagtg ccagtccggc ggcgcggccg agtagatcgg gtagtagtcg acgtcctcga
     1921 cgcccaggcg gtattcgcgc acggcctcgg cgcccggcgc tgacggggcg aagaggaggc
     1981 acagcgagac gatcaggaca cggagcgggg cgggcatcgg cggcgactgc gggtatcgat
     2041 ctgcgcagtg taggcccaag cgacctgaac ggggcagacg cggcgcgggt ctaggtacaa
     2101 agcatcgttc cggagacctt cccgtgctcg cccgcgtcgc cctgcccctg ctcctgctgc
     2161 tcgccccgct cgcccaggcc gaagagccgc tgcgcatcac ccagctgcag cgctgcggcg
     2221 acctgctcgc cgacaacccc gagtactgcc tgcgcgccac cggcctggca gagggcgagc
     2281 tgcgcgtaca cctgggcgac aaggcactgg gggcgcagcg ggttcaccgc gagggctcga
     2341 ggctgcgcct gaacctggac cagggccccg gcgcgccgct gtggctgcag cagggcgagc
     2401 ggcgcagcaa cccggtgtgg ctgtcgcgcg ggcgcagcca ggtggtcgcc gccggccccg
     2461 acgaggtggc gaagaacatg gacggcctga ccacctacct ggacctggtc ggtctgctga
     2521 tcgaggagaa gcacgatggc cgcgaggagg ccgagcgcct ggccgccaag tacggcgcca
     2581 aggtggtcgg cgcgatcgcg ccgctgaacg tcttccagct gcgcctgccg gccaaggacc
     2641 tgatgcagcg cgatgcgctg ctgctgcgcc tgggcagcga ggccagcgtg gacgcggtga
     2701 tcgtcgagga atccgcgccg gagaagggcg aggaaggcga gcggcaagag gtgccgaggg
     2761 agccgagcga cgacgagtgg gcggccaacc gcttcgccga cgcggtgaac tactaccgcc
     2821 gccgggtgcc ggcgaagcag gcgccgatcc cgaccacgcc ggtgcgcatc ggtgtgatcg
     2881 agcgcaatgt cgatttcgac gcgccggact tcgccgacta cctgggcgac tgccggccac
     2941 agcgccgcac ctgcctctac gcccgcgacg ccgacaagcc ggacaaccac ggcagcacgg
     3001 tggccggcat cctcgccgcc catcaccggc gcggcggcaa cagcggcttc ctgcaggcgc
     3061 tggacgacgc cgggccgggc ttcgaggtga tcgtcgagcg caactccgac gccggcatca
     3121 ttgccaacgt cgccgcctcg gtgaacctgg tggaggacgg cgcgcgggtg ctcaactgga
     3181 gctggggcat ccaccgcgtc ggggcgaaga acgtcgaggg cgacgaggtc gactcgctga
     3241 tccgctcggg ccttgccatg agcggctacg aggaactgct ggaagaattc ttcctgtggc
     3301 tgcgccgcga gcacccggac gtggtggtga tcaactcggc cggcaacggc gcggccttct
     3361 ccggcaccga cgaataccgc ctgccctcct ccttcatcac cgaccagttg ctggtggtcg
     3421 gcggccacca gcgcagccag aagagcggcg tgggcgtgga cgacccggag tacgtgatca
     3481 agcgcagctc gtcgaacatc gacatgcgcg tggacatcac cgcctcggcc tgcgcccacg
     3541 cctccaccct cggcgagggc gaacgcggcg aggcgcactg cggcacgtcc tatgccacac
     3601 cgatggtcac cggcgtggtg gcggccatgc tgtcgatcaa ccccgagttg cagccggacc
     3661 agctgcgcat gctgctgcgg cgcagcgcca tgaccatcgg cggcgactac gacttcgagc
     3721 cgatggatgc cgaggacct
//
LOCUS       DATIHC010000154         1832 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42421, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000154 DATIHC010000000
VERSION     DATIHC010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1832
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42421"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(43..762)
                     /locus_tag="VLF16_02490"
     CDS             complement(43..762)
                     /locus_tag="VLF16_02490"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009614824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008753 - NADPH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HSX69774.1"
                     /translation="MNILIVHAHPEPQSFCTAMKDLAVATLEGAGHQVRVSDLYAMGW
                     NPVASAADFGARSNPDYLVYALEQREAVKAGAIAADIAAELDKLLWADLLILNFPLFW
                     CSVPAMLKGWIDRVLVSGTCYGGLRFYDRGGLAGKRALLSFTLGGQQHMFAGEEAVHG
                     DWEPMLRPLQRGTLAYVGMSVLPPFAAYHVPYIGHEAREDILRRYGDYLLQLEFAEPL
                     RFPSLADFDRALNPLQREVPA"
     gene            complement(872..1831)
                     /locus_tag="VLF16_02495"
     CDS             complement(872..1831)
                     /locus_tag="VLF16_02495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HSX69775.1"
                     /translation="MRHQDALGAGILAFALAGMIGSGWLYAEGAIAWWACLLANAFFA
                     SLTHELEHDLIHSMYFRKQRVPHNLMMALVWMARPSTINPWIRRHLHLNHHKLSGTET
                     DLEERAITNGEPWGFARLLMVGDNVMSSFIRFLRAPTWERRKMIVSRTLKGYAPLGLL
                     NWGAWYVFLGFHLIDFVAAAAGAPVAWSATTQAVMDGITFAVVVLVGPNVLRTFCLHF
                     VSSNMHYYGDVELGNVVQQTQVLNPWWLWPLQAFCFNFGSTHAIHHFVVKEPFYLRQM
                     TAPVAHRVMREMGVRFNDFGTFARANRWHPLNQPAATTAQPAA"
BASE COUNT          337 a          564 c          666 g          265 t
ORIGIN      
        1 cctcgtcgta gatcaggccg cagatcacgc agatccaggt cttcatgccg gcacctcgcg
       61 ctgcaacggg ttgagcgccc ggtcgaagtc ggccagcgag gggaagcgca gcggttcggc
      121 gaattccagt tgcagcaggt agtcgccgta gcggcgcagg atgtcctcgc gcgcctcatg
      181 gccgatgtag ggcacgtgat aggcggcgaa cggcggcagc acgctcatgc cgacgtaggc
      241 gagagtgccg cgctgcagcg gacgcagcat gggttcccag tcgccgtgca cggcctcttc
      301 gcccgcgaac atgtgctgct gcccaccgag ggtgaagctg agcagcgcac gcttgccggc
      361 caggccgccg cggtcataga agcgcagccc gccgtagcag gtgccggaga ccagcacgcg
      421 gtcgatccag cccttgagca tggccggcac cgagcaccag aacagcggga agttgaggat
      481 cagcaggtcc gcccacaaca gcttgtccag ctcggcggcg atgtccgcgg cgatggcgcc
      541 ggccttgacc gcctcgcgct gctcaagggc gtagaccagg taatccggat tgctgcgtgc
      601 gccgaagtcg gcggccgagg cgacaggatt ccagcccatg gcatagaggt cggagacgcg
      661 gacctggtgg ccggcgccct ccagggtggc gacggccagg tccttcatgg cggtgcagaa
      721 ggactgcggc tcgggatgag cgtggacgat caggatattc atgggaggtc caaaggaggc
      781 gtcggagcgg tccccttccg ctgctgggag aggggccggg aaaaggcaga agcccctctc
      841 ccgtgagcga gagagggaac tgacgcgcga ctcaggcggc cggctgtgcg gtggtggcgg
      901 ccggctgatt cagcggatgc cagcggttgg cgcgggcgaa ggtaccgaag tcgttgaagc
      961 gcacgcccat ctcgcgcatc acccggtggg ccaccggcgc ggtcatctgg cgcaggtaga
     1021 agggctcctt gaccacgaaa tggtggatcg catgggtgct gccgaagttg aagcagaacg
     1081 cctgcagcgg ccacagccac caggggttga gcacctgggt ctgctgcacc acgttgccca
     1141 gctcgacgtc accgtagtag tgcatgttgg agctgacgaa gtgcaggcag aaggtgcgca
     1201 gcacgttggg gccgaccagc acgaccacgg cgaaggtgat gccatccatc accgcctggg
     1261 tggtggccga ccaggccacc ggcgcgccgg cagcggcggc gacgaagtcg atcaggtgga
     1321 agccgaggaa cacgtaccag gcgccccagt tgagcaggcc cagcggcgca taacccttga
     1381 gcgtgcggct gacgatcatc ttgcggcgct cccaggtcgg cgcccgcagg aagcgaatga
     1441 aggacgacat cacgttgtcg ccgaccatca gcagacgggc gaagccccac ggctcgccgt
     1501 tggtgatggc gcgctcctcc aaatcggtct cggtgccgga gagcttgtga tggttgaggt
     1561 gcaggtgacg gcgaatccac ggattgatcg tgctcggccg ggccatccac accagcgcca
     1621 tcatcaggtt gtgcggcacg cgctgcttgc ggaagtacat ggagtggatc aggtcgtgct
     1681 ccagctcgtg ggtcagcgag gcgaagaacg cattggccag caggcacgcc caccaggcga
     1741 tggcgccttc ggcatagagc cagccgctgc cgatcatgcc ggccagggcg aaggccagga
     1801 tgccggcacc gagggcgtcc tggtggcgca gg
//
LOCUS       DATIHC010000155         4294 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35559, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000155 DATIHC010000000
VERSION     DATIHC010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4294
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35559"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..435)
                     /locus_tag="VLF16_02500"
     CDS             complement(<1..435)
                     /locus_tag="VLF16_02500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1 family glyoxalase III"
                     /protein_id="HSX69776.1"
                     /translation="MTHRALIAVADGVEDIETVTLIDVLRRAEVEVVVASVENRRMFT
                     CARGTRVTADAMLVDVLAQDFDLIVLPGGMPGAQHLAEHEPLADKVRQQARAGKLFAA
                     LCAAPALALQAYGVLRQRRMTCYPAFSDRLSGCTFVDQPVVVD"
     gene            630..1928
                     /locus_tag="VLF16_02505"
     CDS             630..1928
                     /locus_tag="VLF16_02505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011063595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HSX69777.1"
                     /translation="MLEKLFQLKAHNTNVRTEILAGVTTFLTMAYILFVNPAILGETG
                     MDKGAVFVATCLAAAIGSAVMGLIANYPIALAPGMGLNAFFTYTVVLHMGYTWQTALG
                     AVFISATLFFLLSIFRIREWIVNSIPLPLRSAIAAGIGLFLALIALKEAGLVVDNPAT
                     LVGLGDLTSPGPLLAVLGFFLIVALEARRVTGAVMIGILVVTAIAIALGVTPFGGVVS
                     MPPSLAPTFLQLDIAGAFEVGMISVIFAFLFVDLFDNTGTLIGVAKRAGLMSKDGHLP
                     KMGRALIADSTAAMGGSLLGTSTTTSYIESASGVAAGGRTGLTAIVVAVLFLLALFFA
                     PLAGTVPAFATAPALLFVAVLMTSGLAEIDWEDITVAAPVVITALAMPLTFSIANGIA
                     FGFIAWVVIKALAGRFKEINPALVVLAAIFVVKFAFGANA"
     gene            1925..3010
                     /gene="trmA"
                     /locus_tag="VLF16_02510"
     CDS             1925..3010
                     /gene="trmA"
                     /locus_tag="VLF16_02510"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008569855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030697 - tRNA
                     (uracil(54)-C5)-methyltransferase activity, S-adenosyl
                     methionine-dependent [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HSX69778.1"
                     /translation="MIQIGDQAAYAAQLDAKVARLRELLAPFAAPEPAVFDSPREHYR
                     LRAEFRLWREQEERHYAMFAAGDKHTPILIDEFPIASQRINALMPQLKAAWQASRVLS
                     FKLFQVEFLTTLAGDALITLCYHRPLDGEWQAEAEQLAAKLGVSLVGRSRGQRIVIGR
                     DYVEEEMTVAGRAFRYRQPEGAFTQPNGTVCQKMLEWAYDALGERQDDLLELYCGNGN
                     FTLPLSTRVRKVLATEISKTSVNAALANLADNGIDNIELVRLSAEELTQALNEVRPFR
                     RLAGIDLKAYDFGAVFVDPPRTGMDPDTCELTRRFDSILYISCNPETLAANIAQLDDT
                     HRIERCALFDQFPWTHHMEAGVLLVRR"
     gene            complement(3214..>4294)
                     /locus_tag="VLF16_02515"
     CDS             complement(3214..>4294)
                     /locus_tag="VLF16_02515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015093854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HSX69779.1"
                     /translation="SQTGEASTSGQYSATVGTSAWEIDFFGRLRSLNEQALEQYFATE
                     QARRSTQIALVASVANAYLTLQADEQLLQLTRDTLGTYRKSYALTERSFNVGVADALS
                     LSQARTAVQSAEASLAQYTRLVAQDRNALALLLGGGVPNDLPQGEVLGDDLLAEVPAG
                     LPSELLQRRPDVLQAEHELRAANASIGAARAAFFPNISLTANAGSASSELSGLFDGGS
                     GTWLFQPQINLPIFTAGRLKASLDYAEVQKDIQVASYEKAVQVAFQEVADGLAARTTY
                     EQQLTAQRALVTTSEDYYRLAERRFRTGVDSYLTLLDAQRQLFGAQQQLITDRLNQLA
                     SEVNLYKALGGGWHEQTQVATAPAD"
BASE COUNT          610 a         1525 c         1433 g          726 t
ORIGIN      
        1 gtccaccact accggctggt cgacgaaggt gcagccggac aggcgatcgc tgaatgccgg
       61 gtagcaggtc atgcgccgct gcctgagcac accgtaggcc tggagcgcca gggccggggc
      121 cgcgcagaga gcggcgaaca gcttgccggc gcgggcctgc tggcgaacct tgtcggccag
      181 tggttcatgc tcggccaggt gctgggcgcc gggcatgccg ccgggcagca cgatgaggtc
      241 gaagtcctgg gccagcacgt cgaccagcat ggcgtcggcc gtcacccggg tgccgcgggc
      301 acaggtgaac atgcggcgat tctcgacact ggcgaccacc acctcgacct cggcgcggcg
      361 cagcacgtcg atgagggtga cggtttcgat gtcttccacg ccgtcggcga cggcgatcag
      421 ggcgcgatgg gtcatccggt tcctcctcga acggaaaccg atgctgtccg tccggtcata
      481 aattcaccgc tcgggggtga gctggtatag tgcgcggctt ttccggaccc ggccgaatct
      541 gcgctcgttt cccttcgagt tcgcaggctt tgtgctttgc tttcgcagtc cgcagaccct
      601 tgccgcacca gccccacggg agccccacca tgctggaaaa gctgttccaa ctcaaggcgc
      661 acaacaccaa cgtgcgcacc gagattctcg ccggtgtcac caccttcctg accatggcgt
      721 acatcctctt cgtcaacccg gcgatcctcg gtgagaccgg catggacaag ggtgctgtct
      781 tcgtcgccac ctgcctggcc gcggccatcg gctcggcggt gatgggtctg atcgccaact
      841 acccgatcgc cctggcgccc ggcatgggcc tcaacgcctt cttcacctac accgtggtgc
      901 tgcacatggg gtacacctgg cagaccgcac tgggcgcggt attcatctcc gccaccctgt
      961 tcttcctgct gtcgattttc cgcatccgcg agtggatcgt gaacagcatt ccgctgccgc
     1021 tgcgctcggc catcgccgcc ggcatcggcc tgttcctggc gctgatcgcg ctgaaggaag
     1081 ccggcctggt ggtggataac ccggccaccc tggtcggcct cggcgacctc acatcccccg
     1141 gcccgctgct ggccgtgctc ggcttcttcc tgatcgtcgc cctcgaggcc cgccgcgtca
     1201 ccggcgcggt tatgatcggc atcctcgtcg tcaccgccat cgccatcgcc ctgggcgtca
     1261 ccccgttcgg cggcgtggtg tcgatgccgc cgtcgctggc accgaccttc ctccagctgg
     1321 acatcgccgg cgccttcgaa gtgggcatga tcagcgtgat cttcgccttc ctgttcgtcg
     1381 acctgttcga caacaccggc accctgatcg gcgtggccaa gcgcgccggc ctgatgagca
     1441 aggacggcca cctgccgaag atgggccgcg ctctgatcgc cgacagcacc gcggccatgg
     1501 gcggctcgct gctcggcacc agcaccacca ccagctacat cgaatccgcc tcgggcgtgg
     1561 ccgccggcgg ccgcaccggc ctgaccgcca tcgtggtcgc cgtgctgttc ctgctggcgc
     1621 tgttcttcgc cccgctggcc ggcaccgtgc ccgccttcgc caccgcgccg gcgctgctgt
     1681 tcgtcgccgt gctgatgacc tccggcctgg ccgagatcga ctgggaagac atcaccgtcg
     1741 ccgcgccggt ggtgatcacc gccctggcca tgccgctgac cttctccatc gccaacggca
     1801 tcgccttcgg cttcatcgcc tgggtggtga tcaaggcgct ggccggccgc ttcaaggaga
     1861 tcaacccggc cctggtggtg ctggcggcga tcttcgtggt caagttcgcc ttcggcgcca
     1921 acgcatgatc cagatcggtg accaggcggc ctatgccgcc cagctggacg ccaaggtcgc
     1981 ccgcctgcgc gagctgctgg cgcccttcgc cgcgcccgag ccggcggtgt tcgactcgcc
     2041 gcgcgagcat taccgcctgc gcgccgagtt ccgcctgtgg cgcgagcagg aagagcggca
     2101 ctacgcgatg ttcgccgccg gcgacaagca cacgccgatc ctgatcgacg agttccccat
     2161 cgccagccag cgcatcaacg cgctgatgcc gcagctgaag gcggcctggc aggccagccg
     2221 ggtgttgtcg ttcaagctgt tccaggtcga gttcctcacc accctggccg gcgatgcgct
     2281 gatcaccctg tgctaccacc gcccgctgga tggcgagtgg caggccgagg ccgagcagct
     2341 ggcggccaag ctgggcgtca gcctggtggg ccgctcgcgc ggccagcgca tcgtcatcgg
     2401 gcgtgattac gtcgaagaag agatgaccgt cgccgggcgc gccttccgct accgccagcc
     2461 ggagggcgcc ttcacccagc ccaatggcac cgtctgccag aagatgctgg agtgggcgta
     2521 cgacgccctc ggcgagcgcc aggacgacct gctcgagctg tactgcggca acggcaactt
     2581 caccctgccg ctgtccaccc gcgtacgcaa ggtgctggcc accgagatca gcaagacctc
     2641 ggtgaatgcc gccctggcca acctggccga caacggcatc gacaacatcg agctggtacg
     2701 cctgagcgcc gaggagctga cccaggccct caacgaggtg cgcccgttcc gccgcctggc
     2761 cggcatcgac ctgaaggcct acgacttcgg cgccgtgttc gtcgacccgc cgcgcaccgg
     2821 catggacccg gacacctgcg agctgactcg gcgcttcgac agcatcctgt acatctcctg
     2881 caacccggag accctggccg ccaacatcgc ccagctcgac gatacccatc gcatcgagcg
     2941 ctgcgcgctg ttcgaccagt tcccctggac ccaccacatg gaagcgggcg tgttgctggt
     3001 gcggcgctga ggcccaggcc gccatcactc acaccgagcc gtggtgcgca tggcgcatgg
     3061 atgagtgggc tttcccgtag ggtgcgccat gcgcaccggg agccactcgc cgcccatcgg
     3121 tgcgcgcggc gcaccctacg ccagtgcgcc acccgatccg ccatcgcaaa aaaagccccg
     3181 gcatgccggg gctttttcgt ttcagactga cgctcagtcc gcaggggccg tggccacctg
     3241 ggtctgctcg tgccagccgc cgccgagggc cttgtacagg ttgacctcgc tggccagctg
     3301 gttgaggcgg tcggtgatca gctgctgctg ggcgccgaac agctggcgct gggcgtcgag
     3361 cagggtcagg tagctgtcca cgccggtgcg gaagcgccgt tcggcgaggc ggtagtagtc
     3421 ctcgctggtc gtcaccaggg cgcgctgggc ggtgagctgc tgctcgtagg tggtgcgtgc
     3481 ggcgaggccg tcggcgacct cctggaaggc gacctggacc gccttctcgt agctcgccac
     3541 ctggatgtcc ttctgcacct cggcgtagtc gaggctggcc ttgaggcgcc cggcggtgaa
     3601 gatcggcagg ttgatctgcg gctggaacag ccaggtgccg gagccaccgt cgaacaggcc
     3661 ggacagctcg ctgctggcgc tgccggcatt ggcggtcagg ctgatgttcg ggaagaacgc
     3721 cgcgcgggcc gcgccgatgc tggcgttggc cgcgcgcagc tcgtgctcgg cctgcagcac
     3781 gtcggggcgg cgctgcagca gctcggacgg cagcccggcc ggcacctcgg ccagcaggtc
     3841 gtcaccgagc acctcgccct gcggcaggtc attcggcacg ccgccgccca gcagcagggc
     3901 cagggcgttg cggtcctggg ccaccaggcg cgtgtactgc gccaggctgg cctcggcgct
     3961 ctgcaccgcg gtgcgcgcct ggctcagcga cagcgcgtcg gccacgccga cgttgaagct
     4021 gcgctcggtg agggcgtagc tcttgcggta ggtgccgagg gtgtcgcggg tcagctgcag
     4081 caactgctcg tcggcctgca gggtcaggta ggcgttggcc acgctggcca ccagggcgat
     4141 ctgcgtgctg cgccgcgcct gttcggtggc gaagtattgc tccagggcct gctcgttgag
     4201 gctgcgcagg cggccgaaga agtcgatctc ccaggcgctg gtgccgacgg tggcgctgta
     4261 ctggccgctg gtggaggcct cgccggtctg cgac
//
LOCUS       DATIHC010000156         1593 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_40150, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000156 DATIHC010000000
VERSION     DATIHC010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1593
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40150"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..865
                     /locus_tag="VLF16_02520"
     CDS             <1..865
                     /locus_tag="VLF16_02520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003444610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glutamine synthetase"
                     /protein_id="HSX69780.1"
                     /translation="PEVGRQSFSIDAANEFDPLFEDVYDWCELQDLDLDTLIHEDGPA
                     QMEINFRHGDALHLADQITVFKRTMREAALKHDVAATFMAKPITDQPGSAMHIHQSVV
                     DIKTGKNLFSDADGTMSELFLNHIGGLQKYIPEVLPLFAPNVNSFRRFLPDTSAPVNV
                     EWGEENRTVGLRVPEAGPQNRRVENRLAGADANPYLVLAASLLCGYIGMVEGLKPSAP
                     VKGRGYERRNLRLPVTIESALERMEACKAAEKYLGEKFVRGYVAVKRAEHENYKRVIS
                     SWEREFLLLSV"
     gene            928..>1593
                     /locus_tag="VLF16_02525"
     CDS             928..>1593
                     /locus_tag="VLF16_02525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017938121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSX69781.1"
                     /translation="MTNPVNNPKTREWQAMSRQHHLAPFSDYQQLHEKGPRIITKADG
                     VYLWDSEGHKILDGMAGLWCVAVGYGREELVEAASAQMRELPFYNTFFQTAHPPALEL
                     AQAIAEVAPEGMNHVFFTGSGSEGNDTMLRMVRHYWALKGQPEKKVIISRHNGYHGST
                     VAGASLGGMTYMHEQGDLPIPGIVHIPQPYWFGEGGDMSPEEFGIWAADQLEKKILEV
                     GEDK"
BASE COUNT          310 a          539 c          515 g          229 t
ORIGIN      
        1 cccggaagtc ggccgccagt cgttctccat cgacgcggcg aacgagttcg acccgctgtt
       61 cgaggacgtc tacgactggt gcgagctgca ggacctggac ctcgacacgc tgatccacga
      121 ggacggcccg gcgcagatgg agatcaattt ccgtcatggc gacgcgctgc acctggccga
      181 ccagatcacc gtgttcaagc gcaccatgcg cgaggccgcg ctcaagcacg acgtggcggc
      241 caccttcatg gccaagccga tcaccgacca gccgggcagc gccatgcaca tccaccagag
      301 cgtggtggac atcaagaccg gcaagaacct gttctccgac gccgacggca ccatgagcga
      361 gctgttcctc aaccacatcg gcggcctgca gaagtacatc cccgaggtgc tgccgctgtt
      421 cgcgccgaac gtcaactcgt tccgccgctt cctgccggat acctcggcgc cggtgaacgt
      481 cgagtggggc gaagagaacc gcaccgtggg cctgcgcgtg ccggaggccg gcccgcagaa
      541 ccgccgcgtg gagaaccgcc tggccggcgc cgacgccaac ccgtatctgg tgctggccgc
      601 ctcgctgctg tgcggctaca tcggcatggt cgagggcctc aagcccagtg cgccggtcaa
      661 gggccgtggc tacgagcggc gcaacctgcg cctgccggtg accatcgaga gcgccctgga
      721 acgcatggag gcctgcaagg ccgccgagaa gtacctgggc gagaaattcg ttcgcggcta
      781 tgtcgcggtg aagcgtgccg agcacgaaaa ctacaagcgg gtgatcagct cctgggaacg
      841 cgagttcctg ctgctctccg tctgataggg aaggggccgg gcggcgacgc ccggcgcccg
      901 accggatgcg caaaatcgag gtgaagaatg accaacccag tgaacaaccc gaaaacccgc
      961 gaatggcagg ccatgagccg tcagcaccat ctcgcgccgt tcagcgacta ccagcagctg
     1021 cacgagaagg gcccgcgcat catcaccaag gccgacggcg tctatctctg ggatagcgaa
     1081 ggccacaaga ttctcgacgg catggccggt ctctggtgcg tcgccgtcgg ttacggccgc
     1141 gaggagctgg tcgaggcggc cagcgcgcag atgcgcgagc tgcccttcta caacaccttc
     1201 ttccagaccg cccacccgcc ggcgctggag ctggcccagg ccatcgccga ggtggcgccg
     1261 gaaggcatga accacgtgtt cttcaccggt tccggctccg agggcaacga caccatgctg
     1321 cgcatggtcc gtcactactg ggcgctcaag ggccagccgg aaaagaaggt catcatctcc
     1381 cgccacaacg gctatcacgg ctccaccgtg gccggcgcca gcctgggcgg catgacctac
     1441 atgcacgagc agggcgacct gccgatcccg ggcatcgtgc acatcccgca accgtactgg
     1501 ttcggtgagg gcggcgacat gagccccgag gagttcggca tctgggccgc cgaccagctg
     1561 gagaagaaga ttcttgaggt cggcgaagac aag
//
LOCUS       DATIHC010000157         1709 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_9779, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000157 DATIHC010000000
VERSION     DATIHC010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1709
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9779"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            13..513
                     /locus_tag="VLF16_02530"
     CDS             13..513
                     /locus_tag="VLF16_02530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003455604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF523 domain-containing protein"
                     /protein_id="HSX69782.1"
                     /translation="MEKLLVSRCLLGHRVRYDGGAHGPYDLLQQWQNEGRLVPLCPEV
                     AGGLPTPRPPAEIPGGQGGGVLEGRLPVLTDDGEDVTAAFVAGAEIALRLVQQHGLRV
                     AVLKARSPSCGNSHNYDGSFSGTLVEGEGVTAALLRRHGVRVFNEGQLAEAAAELARL
                     EAESTR"
     gene            complement(598..>1709)
                     /gene="ppk1"
                     /locus_tag="VLF16_02535"
     CDS             complement(598..>1709)
                     /gene="ppk1"
                     /locus_tag="VLF16_02535"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004373351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009358 - polyphosphate kinase complex
                     [Evidence IEA];
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006799 - polyphosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HSX69783.1"
                     /translation="PVIPKLLQNAENIFSVVGKQDILLMHPFESFTPVVDLLRQAAKD
                     PHVLAIKQTLYRSGANSEIVDALVEAARNGKEVTAVIELRARFDEESNLQLASRLQAA
                     GAVVIYGVVGFKTHAKMMLILRRENGELRRYAHLGTGNYHAGNARLYTDYSLLTADDA
                     LGEDVSKLFNQLIGMGKTLRMKKLLHAPFTLKKTLLDMIAREAQLASEGKPAHIMAKV
                     NSLTDPKIIRALYKASQMGVRVDLVVRGMCCLRPGVHGVSHNIHVRSIVGRFLEHSRI
                     YYFLNGGDEKLYLSSADWMERNLDKRVETCFPVEGKKLITRVKKELESYLSDNTQAWV
                     LQPDGRYLRLSPSGNANPRNAQAALLDKLTTPQVR"
BASE COUNT          258 a          538 c          608 g          305 t
ORIGIN      
        1 aggacgcgga tgatggaaaa actgctggtc agtcgctgcc tgctgggcca tagggtgcgc
       61 tacgacggtg gcgcccacgg cccctacgat ttgctgcagc agtggcagaa cgagggccgc
      121 ctggtgccgt tgtgccccga agtggcgggc ggattgccga cgccgaggcc tccggcggag
      181 attcccggcg gccagggcgg cggcgtgctg gaaggtcgtc tgccggtgct gaccgatgac
      241 ggcgaggacg tcaccgcggc cttcgtcgcc ggcgccgaga tcgccctgcg cctggtgcag
      301 cagcatggcc tgcgggtcgc cgtgctcaag gcacgcagcc cgtcctgcgg caacagccac
      361 aactacgacg gtagcttcag cggcaccctg gtcgaaggcg aaggcgtcac cgccgcgctg
      421 ctcaggcgcc atggcgtgcg ggtgttcaac gaggggcaac tggccgaggc cgccgccgag
      481 ctggcgaggc tggaggcgga gtcgactcgg tgacgatggc ggtgcgcgcg gcgcactctg
      541 ccagacgcac ctgcataaaa aagggaggcc gaggcctccc ttttttcgtt cgccggctca
      601 gcgcacctgc ggcgtggtca gcttgtccag cagcgcggcc tgggcgttgc gcgggttggc
      661 gttgccgctc gggctgaggc gcaggtagcg gccgtccggc tgcagcaccc aggcctgggt
      721 gttgtcggac aggtagctct ccagctcctt cttgacccgg gtgatgagct tcttgccttc
      781 caccgggaag caggtctcca cgcgcttgtc gaggttgcgc tccatccagt cggcgctgga
      841 gagatagagc ttctcgtcgc caccgttgag gaagtagtag atgcggctgt gctcgaggaa
      901 gcgaccgacg atggagcgca cgtggatgtt gtgcgacacg ccatgcacgc ccgggcgcaa
      961 acagcacatg ccgcgcacca ccaggtcgac gcgcacgccc atctggctgg ccttgtacag
     1021 cgcgcggatg atcttcgggt cggtcagcga gttgaccttg gccatgatgt gcgccggctt
     1081 gccctcgctg gccagctgcg cctcgcgggc gatcatgtcg agcagggtct tcttcagggt
     1141 gaacggcgcg tgcagcagct tcttcatgcg cagggtcttg cccatgccga tcaactggtt
     1201 gaacagcttg gagacgtcct cgccgagcgc atcgtcggcg gtcagcaggc tgtagtccgt
     1261 gtacagtcgt gcgttgccgg cgtggtagtt gccggtgccc aggtgggcgt agcggcgcag
     1321 ctcgccgttc tcgcgacgca ggatcagcat catcttggcg tgggtcttga agccgaccac
     1381 gccgtagatc accaccgcac cggcggcctg cagacggctg gccagctgca ggttggattc
     1441 ctcgtcgaag cgcgcgcgca actcgatcac cgcggtgacc tccttgccgt tgcgcgccgc
     1501 ctcgaccaga gcgtcgacga tttccgagtt ggccccggag cggtacaggg tctgtttgat
     1561 cgccaggaca tgcgggtctt tcgcggcctg gcgcagcagg tccaccaccg gggtgaacga
     1621 ctcgaagggg tgcatcagca ggatgtcctg cttgccgacc acgctgaaga tgttctcggc
     1681 gttctgcagc agcttgggga tcaccgggg
//
LOCUS       DATIHC010000158         1689 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5255, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000158 DATIHC010000000
VERSION     DATIHC010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1689
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5255"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..466)
                     /gene="rplD"
                     /locus_tag="VLF16_02540"
     CDS             complement(<1..466)
                     /gene="rplD"
                     /locus_tag="VLF16_02540"
                     /inference="COORDINATES: protein motif:HMM:TIGR03953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HSX69784.1"
                     /translation="MANTVQVDLPAEIFDVQTNVPLLHQVVVAQLAAARQGTHKTKTR
                     AEVSGAGRKPFKQKGTGRARQGSIRAPHMTGGGVVHGPTPRDYSQRTPKKMIAAALRG
                     ALSDRARNGRIHVVAELVAGSTPSTKEALATLRGVSDRKNLLVVIERANDVAA"
     gene            complement(471..1121)
                     /gene="rplC"
                     /locus_tag="VLF16_02545"
     CDS             complement(471..1121)
                     /gene="rplC"
                     /locus_tag="VLF16_02545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000579825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HSX69785.1"
                     /translation="MTATRNVKGLLGTKLGMTQVWDENNKLIPVTVVQADSNVITQLR
                     NAEADGYVAVQIGYGQIDPRKVTKPLAGHFEKAGVTPRRHVVELRTADAAEYELGQEL
                     SVEVFEAGQKIDVIGTTKGKGFAGVMKRHGFHGVGASHGAHKNHRKPGSIGGASTPSR
                     VFKGMKMAGRMGAVRHTTLNLTVHAVDVEKSLLLIKGAVPGARGQVVLVRTAVKGA"
     gene            complement(1139..1447)
                     /gene="rpsJ"
                     /locus_tag="VLF16_02550"
     CDS             complement(1139..1447)
                     /gene="rpsJ"
                     /locus_tag="VLF16_02550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012578474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HSX69786.1"
                     /translation="MAGQKIRIRLKSYDHEVIDVSARKIVETVTRAGATVVGPVPLPT
                     EKNVYCVIRSPHKYKDSREHFEMRTHKRLIDIIDPTPKAVDSLMRLDLPADVNIEIKL
                     "
BASE COUNT          294 a          494 c          538 g          363 t
ORIGIN      
        1 gtgcagcaac gtcgttggcg cgctcaatga caacgagcag gttcttgcgg tcggaaacgc
       61 cgcgcagcgt tgccagtgct tccttggtgg acggcgtgga gccggcaacc agttcagcaa
      121 cgacgtggat gcgtccgtta cgggcgcggt cagacagtgc gccgcgcagt gcagcagcaa
      181 tcatcttctt gggggtccgc tggctgtagt cacgcggggt gggaccgtgg acaacgccac
      241 cgccggtcat gtgaggagca cggatggaac cctgacgggc gcggccggtg cccttctgct
      301 tgaacggctt gcgtcctgca ccggaaactt cggcgcgggt cttggtcttg tgggtaccct
      361 ggcgagcagc agcgagctgt gcaacgacga cctggtgcag cagcggcacg ttggtctgaa
      421 cgtcgaagat ctctgcaggc aggtcaacct ggacagtgtt agccattgaa ctaggctccc
      481 ttcacggcgg tgcgtacgag tacgacctgg ccgcgggcac cgggaacggc gcccttgatc
      541 aggagcagcg acttctcgac gtcaaccgcg tgaaccgtga ggttcagcgt ggtgtgacga
      601 acggcgccca tgcggccggc cattttcatg cccttgaaga cgcggctcgg ggtggatgcg
      661 ccaccgattg aaccgggctt acggtggttc ttgtgggcac cgtgggaagc tccaacgccg
      721 tggaagccgt gacgcttcat aacaccggcg aagcccttac ccttggtggt gccgatgacg
      781 tcgatcttct ggccggcttc gaagacctct acggagagct cctggcccag ctcgtactca
      841 gcagcatctg cggtacggag ttcgacgacg tggcggcgag gcgtgacgcc tgccttctca
      901 aagtgaccag ccagcggctt ggtgaccttg cggggatcga tctggccgta gccgatctga
      961 acggcgacgt agccatcagc ttctgcgttg cgcagctggg tgatgacgtt cgaatctgcc
     1021 tggaccacag tgacggggat gagcttgttg ttctcgtccc agacctgggt catgccgagc
     1081 ttcgtgccca gcaggccctt tacgttacgg gttgcggtca tagtctctca gcacctccct
     1141 acagcttgat ttcgatgttc acgtcagccg gcaggtcgag acgcatgagc gagtcaacag
     1201 ccttcggcgt gggatcgatg atgtcgataa gacgcttgtg cgtgcgcatt tcaaagtgct
     1261 cgcggctgtc cttgtacttg tgcggagagc ggataacgca gtacacgttc ttctccgtgg
     1321 gcagcggcac cgggccgact accgttgcgc ctgcgcgcgt gaccgtctca acgatcttcc
     1381 gtgctgaaac gtcaatgacc tcgtggtcgt atgacttcag ccggatgcgg attttttgtc
     1441 ccgccatgtc gcctgactct ctttcagtaa atgctgctct gtttacttac gtgttgtatg
     1501 gctgccgaag catttgaagt cgtaactacc actcgccgca caaactgaat ccggatgaat
     1561 ccgggttcct caccttgccg gcgcaaccga cccccgcggt cgggcgtgtc gcgctgtgca
     1621 aaacgcacga gcccgcagtt cctttagggg gattgggtta tgtttgggct tcaacctgga
     1681 ccctgacac
//
LOCUS       DATIHC010000159         1871 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_16531, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000159 DATIHC010000000
VERSION     DATIHC010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1871)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1871)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1871
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16531"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(84..935)
                     /gene="urtD"
                     /locus_tag="VLF16_02555"
     CDS             complement(84..935)
                     /gene="urtD"
                     /locus_tag="VLF16_02555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002555397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0033221 - ATPase-coupled urea
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015840 - urea transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urea ABC transporter ATP-binding protein UrtD"
                     /protein_id="HSX69787.1"
                     /translation="MRAAPVPEFMLEPAFDPAGSGRDAVGLGSAAAKGLDVRHGTILT
                     LEGINVSFDGFRALTDLNLYIGVGELRCIIGPNGAGKTTMMDVITGKTRPDNGIAYFG
                     DTLDLTQMSEVEIAQAGIGRKFQKPTVFEALSVFENLELALKTDKSVWASLRARLSGV
                     QKERIEEVLSTIRLESSRHRPAGLLSHGQKQFLEIGMLLVQDPQLLLLDEPVAGMTDA
                     ETEFTAELFKSLARKHSLMVVEHDMGFVGTIADHVTVLHQGSVLAEGSLEDVQANERV
                     IEVYLGR"
     gene            complement(932..>1871)
                     /gene="urtC"
                     /locus_tag="VLF16_02560"
     CDS             complement(932..>1871)
                     /gene="urtC"
                     /locus_tag="VLF16_02560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0033221 - ATPase-coupled urea
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015840 - urea transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="urea ABC transporter permease subunit UrtC"
                     /protein_id="HSX69788.1"
                     /translation="AYGLTLVGKILCYAIVALALDLVWGYAGLLSLGHGLFFALGGYA
                     MGMYLMRQSAGDGLPAFMSFLAWSELPWYWYGTSNFLWALCLVVLAPGLLALVFGFFA
                     FRSRIKGVYFSIMTQALTFAGMLLFFRNETGFGGNNGFTNFRTILGFDITAPGTRAFL
                     FFCTVVLLVGSLVLGFALARSKFGRVLTAVRDAENRLMFCGYDPRGYKLFIWVLSAVL
                     CGLAGALYVPQVGIINPSEMSPTNSIEAAIWVALGGRGTLIGPLLGAGLVNGMKSWFT
                     VAFPEYWLFALGALFIVITLFLPKGVIGLLKKEKDQ"
BASE COUNT          350 a          599 c          629 g          293 t
ORIGIN      
        1 gtcttggtgg acaaggctgc gccgttgtcc accctacgtc gcatctgtag ggtggatggc
       61 cgcagccatc caccacccgc ggctcagcgg cccaaataaa cctcgatcac ccgctcgttg
      121 gcctgcacgt cctctagcga accttcggcc agcacgctgc cctggtgcag cacggtgacg
      181 tggtcggcga tggtgccgac gaagcccatg tcgtgctcga ccaccatcag cgagtgcttg
      241 cgtgccagcg acttgaacag ttcggcggtg aactcggtct cggcatcggt catgcccgcc
      301 accggctcat cgagcagcag cagttgcggg tcctggacca gcagcatgcc gatttccagg
      361 aactgcttct ggccgtgcga cagcagcccg gccgggcgat gccgcgagct ttccaggcgg
      421 atggtgctga gcacctcctc gatacgctct ttctgcacgc cggagagcct ggcgcgcagg
      481 ctggcccata ccgacttgtc ggtcttcaat gccagctcca ggttctcgaa cacgctgagc
      541 gcctcgaaca ccgtgggctt ctggaacttg cgaccgatac cggcctgggc gatctcgacc
      601 tcgctcatct gggtcaggtc gagggtgtcg ccgaagtagg cgatgccgtt gtccgggcgg
      661 gtcttgccgg tgatcacgtc catcatggtg gtcttgccgg cgccgttagg gccgatgatg
      721 caacgcagtt cgccgacgcc gatgtacagg ttgaggtcgg tcagagcgcg gaagccgtcg
      781 aagctgacat tgatgccctc cagggtgagg atggtgccgt ggcgcacatc caggcccttg
      841 gccgcggcgc tgccgagacc gaccgcgtcg cggccgctgc cggccgggtc gaaggcgggt
      901 tcgagcatga attcgggtac cggagcggct ctcattggtc cttctccttt ttcagcagac
      961 cgatcacgcc cttgggcagg aagagcgtaa tgacgataaa cagcgcgccg agggcgaaca
     1021 gccagtactc ggggaaggcc acggtgaacc agctcttcat gccgttgacc aggccggcgc
     1081 cgagcagcgg gccgatcagc gtgccgcgcc cgccgagggc gacccagatg gccgcctcga
     1141 tggagttggt cggcgacatc tcgctggggt tgatgatgcc cacctgcggc acgtacagcg
     1201 cgccggccag gccgcacagc acggcggaga gcacccagat aaacagcttg tagccgcgcg
     1261 gatcatagcc gcagaacatc aggcggttct ccgcgtcgcg cacggcggtc agcacccggc
     1321 cgaacttgct gcgcgccagg gcaaagccca gcaccaggct gccgaccagc agcaccacgg
     1381 tgcagaagaa caggaaagcg cgggtgcccg gcgcggtgat gtcgaagccg aggatggtgc
     1441 ggaagttggt gaagccgttg ttgccgccga agccggtctc gttgcggaag aacagcagca
     1501 tgccggcgaa ggtcagtgcc tgggtcatga tcgagaaata cacgcccttg atccgcgagc
     1561 ggaaggcgaa gaagccgaac accagggcca gcaggccggg cgccagcacc accaggcaca
     1621 gggcccagag gaagttgctg gtgccgtacc agtaccaggg cagctcgctc caggcgagga
     1681 agctcatgaa ggcgggcagg ccatcccccg cgctttgacg catcaggtac atgcccatgg
     1741 catagccgcc gagggcgaag aacaggccgt ggccgagcga cagcaggccg gcgtagcccc
     1801 agaccaggtc cagcgccaaa gcgactatgg cgtagcagag gatcttgccg accagggtca
     1861 ggccataggc c
//
LOCUS       DATIHC010000160         1962 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_9801, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000160 DATIHC010000000
VERSION     DATIHC010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1962)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1962)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1962
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9801"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..868
                     /locus_tag="VLF16_02565"
     CDS             <1..868
                     /locus_tag="VLF16_02565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010435055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="putative urea ABC transporter substrate-binding
                     protein"
                     /protein_id="HSX69789.1"
                     /translation="LNDYVESINQYTAGQFDGCTMTNMDALTIPAAGGIDSTALIVGD
                     FSNGNDGIVLKGEKKTLGDLKGMDVNLVELSVSHYLLARGLERAGLAEKDLKVVNTSD
                     ADMVAAFATDDVQAVATWNPLLAEIEATPGVTKVFDSSQIPGEIIDLMVVNSETLKDN
                     PALGKALTGAWYEIMATMGADSAEGKAAREHMAKASGTDLAGYEAQLAATKMFYSAKD
                     AVAFANSPKLPATMTKVAEFSFSHGLLGEGAQSADAVGMAFARDVVTGDKGNVKLRFD
                     PSYMQMAADGKL"
     gene            976..1791
                     /locus_tag="VLF16_02570"
     CDS             976..1791
                     /locus_tag="VLF16_02570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004881213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HSX69790.1"
                     /translation="MRLINRHPDRGGRLLLILLPFALLLFAYFAGSTARLAENPNDKL
                     LPGATQMVDAVQRLAFTEDKRSGGYLFWQDTASSLGRLGLGIGIAALLGLCLGIAAGT
                     LPLLSAPLSPLLTVLSMVPPLAILPILFIVFGLGELSKVMLIVIGITPILARDMKQRA
                     REIPAELLIKAQTLGANTWTLILRVVLPQLLPRLLIALRLVLGSAWLFLIAAEAIAST
                     DGLGYRIFLVRRYLAMDVILPYVVWITLLAWLMDLGLRQLARLCFPWYKGAKA"
     gene            1788..>1962
                     /locus_tag="VLF16_02575"
     CDS             1788..>1962
                     /locus_tag="VLF16_02575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018606940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSX69791.1"
                     /translation="MSFIQVNNVWQEYGDQVVLERLNLIVREGEFCTLVGASGCGKST
                     FLRLLLGQERPSKG"
BASE COUNT          335 a          695 c          605 g          327 t
ORIGIN      
        1 gcttaacgac tacgtcgagt cgatcaacca gtacaccgcc ggccagttcg acggctgcac
       61 catgaccaac atggacgcgc tgaccatccc cgccgccggc ggcatcgaca gcaccgcgct
      121 gatcgtcggt gacttctcca acggcaacga cggcatcgtg ctcaagggcg agaagaagac
      181 cctcggcgac ctcaagggca tggatgtcaa cctggtcgag ctgtccgtct cccactacct
      241 gctggcccgt ggcctggaac gcgccggcct ggccgagaag gacctcaagg tggtcaacac
      301 ctccgacgcc gacatggtcg ccgccttcgc caccgatgac gtacaggccg tcgccacctg
      361 gaacccgctg ctggccgaga tcgaagccac gccgggcgtg accaaggtgt tcgactccag
      421 ccagattccc ggcgagatca tcgacctgat ggtggtcaac agcgagacgc tgaaggacaa
      481 ccccgcgctg ggcaaggcgc tgaccggcgc ctggtacgaa atcatggcca ccatgggcgc
      541 cgactccgcc gagggtaagg ccgcccgcga gcacatggcc aaggcctccg gcaccgacct
      601 ggccggctac gaggcgcagc tcgccgcgac caaaatgttc tattcggcca aggacgccgt
      661 ggccttcgcc aacagcccga agctgccggc gaccatgacc aaggtggccg agttctcctt
      721 ctcccacggc ctgctcggcg agggcgcgca gagcgccgac gcagtcggca tggccttcgc
      781 cagagacgtg gtcaccggcg acaagggcaa cgtcaagctg cgcttcgacc cgagctacat
      841 gcagatggcg gccgacggaa aactctgacc gttgcgtagg gtggaaaacg gctgcaagcc
      901 ttttccacct ccgcggcccg cttggtggga aatcgctccg cgagtttccc accctacgcc
      961 ctacgagagc tccgtatgcg cctgatcaac cgacacccgg accgcggcgg ccgcctgctg
     1021 ctaatcctgc tgcccttcgc cctgctgctg ttcgcctatt tcgcaggctc cacggcacgg
     1081 ctggcggaga accccaacga caagctgctg cccggcgcga cgcagatggt cgatgcggtg
     1141 cagcgcctgg ccttcaccga agacaagcgc agcggcggct acctgttctg gcaggacacc
     1201 gcgtccagcc tggggcgctt aggtctgggc atcggcatcg ccgccctgct cggcctgtgc
     1261 ttagggatag ccgccggtac cctgccgctg ctgagcgcac cgctgtcgcc gctgctcacg
     1321 gtgctgtcga tggtgccgcc gctggcgatc ctgccgatcc tgttcatcgt ctttgggctc
     1381 ggagaactgt ccaaggtgat gctgatcgtc atcggcatca ccccgatcct ggcccgcgac
     1441 atgaagcagc gcgcccggga gatcccggcc gaactgctga tcaaggcgca gaccctcggc
     1501 gccaacacct ggaccctgat cctgcgcgtg gtgctgccgc agctgctgcc gcgcctgttg
     1561 atcgccctgc gcctggtgct cggttcggcc tggctgttcc tcatcgccgc cgaggccatc
     1621 gccagcaccg acggcctcgg ctaccgcatc ttcctcgtgc gccgctacct ggccatggac
     1681 gtgatcctgc cctacgtggt gtggatcacc ctgctcgcct ggctgatgga ccttggcctg
     1741 cgccaactcg cccgcctctg cttcccctgg tacaaaggag ccaaggcatg agcttcattc
     1801 aggtcaataa cgtctggcag gaatacggcg accaggtcgt gctggaacga ctgaacctga
     1861 tcgtccgcga gggcgagttc tgcacgcttg taggagcctc cggctgcggc aagtcgacct
     1921 tcctgcgcct gctgctgggc caggagcggc cgagcaaggg cg
//
LOCUS       DATIHC010000161         1706 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_23568, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000161 DATIHC010000000
VERSION     DATIHC010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1706)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1706)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1706
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23568"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..151
                     /locus_tag="VLF16_02580"
     CDS             <1..151
                     /locus_tag="VLF16_02580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="short-chain dehydrogenase"
                     /protein_id="HSX69792.1"
                     /translation="RHIAARLDGQPYEIAFPTPFITALRLLGLLPTGLQLALGKRLSR
                     SEQRP"
     gene            148..1395
                     /locus_tag="VLF16_02585"
     CDS             148..1395
                     /locus_tag="VLF16_02585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010428680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSX69793.1"
                     /translation="MKVAIVGSGISGLTCAYLLHRRHEITLFEAGDWVGGHTHTVDVE
                     LDGERHAIDTGFIVFNDWTYPNFIRLLERLGVASRPTEMSFSVHDPRNDEQYNGNNLN
                     SLFARRRNLISPAFWGMLRDILRFNREAQADLAQQRIDTDITLGAYLEQRRYGRRFID
                     HYIVPMGAAIWSMSLADMLGFPLQFFVRFFRNHGLLSVNDRPQWRVVEGGSRSYIAPL
                     TAGFAERIRLDCPVQRVQRDASGVIVHSPAGVEYFDRIIFACHSDQALALLASPSQAE
                     QSILGDLRYAENEVVLHHDSRLLPSRRLAWASWNYRLGGAAERPAAVTYNMNILQGLR
                     SATTFCVSLNQTEAIDPAKILGRYRYAHPQYSLAGLRAQERWEELHGQLHTYYCGAYW
                     ANGFHEDGVVSALRVAEAFGERL"
     gene            1392..>1706
                     /locus_tag="VLF16_02590"
     CDS             1392..>1706
                     /locus_tag="VLF16_02590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003379208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1365 family protein"
                     /protein_id="HSX69794.1"
                     /translation="MNSALYQGWVQHRRFLPRGHAFRYRIGLLYLDLAEQDAVLGLSP
                     LTGRGRWAPFSFRESDYLPHLTDTGMPLDRAVRQCVEQALGRAPGGRICLLTQPRSWG
                     LAF"
BASE COUNT          249 a          648 c          530 g          279 t
ORIGIN      
        1 ccgccatatc gccgcgcggc tcgacggcca gccctacgaa atcgccttcc ccacgccgtt
       61 catcaccgcc ctgcgcctgc tcggtctgct gcccaccggc ctgcagctgg cgctcggcaa
      121 acgtctatcc cgctcggagc agcgcccatg aaagttgcca tcgtcggcag tggtatttcc
      181 ggcctgacct gcgcctacct gctgcatcgc cgtcatgaga tcaccctgtt cgaggccggt
      241 gactgggtcg gcggccatac ccacacggtg gacgtcgagc tcgacggcga gcgccacgcc
      301 atcgacaccg gtttcatcgt cttcaacgac tggacctacc ccaacttcat ccgcctgctg
      361 gagcgcctcg gcgtcgcgtc gcgccccacc gagatgagct tctcggtgca tgacccgcgc
      421 aacgacgagc agtacaacgg caacaacctc aacagcctgt tcgcacgccg gcgcaacctg
      481 atctcgccgg ccttctgggg catgctgcgc gacatcctgc gtttcaaccg cgaggcccag
      541 gccgacctgg cgcagcagcg catcgacacc gacatcaccc tcggcgccta cctggagcag
      601 cggcgctacg gccggcgctt catcgaccac tacatcgtgc ccatgggcgc ggccatctgg
      661 tccatgtcgc tggccgacat gctgggcttt ccgctgcagt tcttcgtgcg cttcttccgc
      721 aaccacggcc tgctgtcggt caacgaccgg ccgcagtggc gggtggtcga gggcggctcg
      781 cgcagttata tcgcgccgct gaccgccggc ttcgccgagc gcatccgcct cgattgcccg
      841 gtgcagcggg tgcagcgcga cgccagtggc gtgatcgtgc acagcccggc cggtgtggag
      901 tatttcgacc gcatcatctt cgcctgccac agcgaccagg ccctggccct gctggcctcg
      961 cccagccagg ccgagcagag catcctcggc gacctgcgct atgccgagaa cgaggtggtg
     1021 ctgcaccacg acagtcgcct gctgccctcg cgccgcctgg cctgggccag ctggaactac
     1081 cgcctcggcg gcgcggccga gcggcctgcg gcggtgacct acaacatgaa catcctgcag
     1141 ggcctgcgca gcgccaccac cttttgcgtc agcctcaacc agaccgaggc catcgacccg
     1201 gcgaagatcc tcggccgcta ccgctacgcc catccgcagt acagcctggc cggcctgcgc
     1261 gcccaggagc gctgggagga gctgcacggc cagctgcaca cctattactg cggcgcctac
     1321 tgggccaacg gcttccatga agacggcgtg gtcagcgcgc tgcgcgtggc cgaagccttc
     1381 ggggagcggc tgtgaacagc gcgctgtacc agggctgggt gcagcatcgg cggttcctgc
     1441 cgcgcggcca cgccttccgc taccgcatcg gcctgctcta tctggacctg gccgaacagg
     1501 acgccgtgct cggcctctcg ccgctgaccg gccgcgggcg ctgggcgccg ttttccttcc
     1561 gcgaatccga ctacctgccc catctcaccg acaccggcat gccgctggac cgggccgtgc
     1621 gccagtgtgt cgagcaggct ctgggccgcg cgccgggcgg gcgcatctgc ctgctgaccc
     1681 agccgcgcag ctggggcctg gcgttc
//
LOCUS       DATIHC010000162         3641 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7399, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000162 DATIHC010000000
VERSION     DATIHC010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3641
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7399"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..542
                     /locus_tag="VLF16_02595"
     CDS             <1..542
                     /locus_tag="VLF16_02595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="beta-ketoacyl synthase chain length factor"
                     /protein_id="HSX69795.1"
                     /translation="FHVAWPLADAAGPLPLVFASRHGETPRTLAILEDLARDEPLSPT
                     QFSLSVHNAIIGLWSIQRGDTSEMTALAAEGDGLEQAVLEASTLLGEGAPGVLLIVAE
                     ENPPALYGPYIDDVPFPYAVALLLRPGADWQLQLAEGAGPRAAWPHALELVRALSGGA
                     DSLQHHWKRRQWNWSRIGA"
     gene            515..1324
                     /locus_tag="VLF16_02600"
     CDS             515..1324
                     /locus_tag="VLF16_02600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017520481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HSX69796.1"
                     /translation="MELVTHRGLSPYSAPYWWRLIATALSFTLFGVGGVLLRLVVFPL
                     LALLPGDALARRTRARAVVSRTFYWFVQFMFRSGVLTYEVEGAERLGRPGQMVIANHP
                     SLIDVVVLIAFIRDANCVVKQSLWDDPCMRGPIRAAGYISNSGSMDMLEEAATALEQG
                     QTLIVFPEGTRTTPGQAPEFHRGAAAIAVRGARIVTPVVISVTPTTLTKAEPWCSIPS
                     RRFHFRLRVGEDIDPRQFTEQAPLPIASRKLNDHLHQHFMRELATDERSAN"
     gene            1305..1565
                     /locus_tag="VLF16_02605"
     CDS             1305..1565
                     /locus_tag="VLF16_02605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019825325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantetheine-binding protein"
                     /protein_id="HSX69797.1"
                     /translation="MSDLQTEIKNLIIEALGLEDMAAEDIAADLTLFGEGLGLDSVDA
                     LELGLAIQKRFGIKIDAEAKDTRQHFANVASLAAFVASKQAA"
     gene            1577..1840
                     /locus_tag="VLF16_02610"
     CDS             1577..1840
                     /locus_tag="VLF16_02610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015278355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HSX69798.1"
                     /translation="MQSREDIFATLRDALVELFELDAERVTLDANLYEDLEIDSIDAV
                     DLIDHIKRQTGKKIAAEEFKAVRTVGDVVEAVYQVVNAEAAAG"
     gene            1844..2389
                     /locus_tag="VLF16_02615"
     CDS             1844..2389
                     /locus_tag="VLF16_02615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017520484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69799.1"
                     /translation="MGRLFGLLLVVAGLLYPFAVYYGMEHLSPRLFAALLGGLWLARV
                     LTQPGKPGALWMAGAALAFCALLGLAGEPALLRWYPVLLNLMLLALFGLSLKFGPPLV
                     ERLARLREPELPEHAVRYTRKVTGVWAGFFLANALVVVALTLWAPLAWWTLYTGLIAY
                     ALMGLLFAAEWLIRQQVRRHG"
     gene            2386..>3641
                     /locus_tag="VLF16_02620"
     CDS             2386..>3641
                     /locus_tag="VLF16_02620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HSX69800.1"
                     /translation="MSWLALADHLLHPLAGRAVALEPALDHAQLQQRALRLAGALQAR
                     GVQRVALYLEDAGELAIALLGAWRAGAAVLLPADAQAQSRQRLSEQADLWLDSLVDLD
                     GEPLAPAALNLDTCRLTLCTSGSSGEPKLIDKSLRQLANEVDALEQLWGQDLTGATIF
                     GSVAAQHIYGLLFRVLWPLCAGRPFWRRALPFPEDLQRESLGQPAFAWVASPALLKRM
                     GDNLDWQALSSVRRVFSSGGALPAEVSVELDQQLDQQPTEIYGSSETGGIAWRQGGEL
                     WQPFPGVELSLNDEGALRIASPYLPAGHIEQSADAAELQADGRFALRGRLDRIVKLEE
                     KRISLPMLEQALSQHEWVADARLGVIQEGRAFLGALLALSPAGLHALRNQGRKTVTET
                     LRKHLAGHCEAIALPRRWRLLLELPY"
BASE COUNT          527 a         1329 c         1202 g          583 t
ORIGIN      
        1 cctttcatgt cgcctggccg ctggccgatg ccgccggccc gctgccgctg gtgttcgcct
       61 cgcgccacgg cgagaccccg cgcaccctgg ccatcctcga agacctggcc cgcgacgagc
      121 cgctctcgcc gacccagttc agcctctcgg tgcataacgc gatcatcggc ctgtggtcga
      181 tccagcgcgg cgataccagc gagatgaccg ccctggccgc cgagggcgac ggcctggagc
      241 aggccgtgct ggaggcttcc accctgctcg gcgagggcgc gcccggcgtg ctgctgatcg
      301 tcgccgagga aaacccgccc gcgctctacg gcccctacat cgacgacgtg cccttcccct
      361 acgccgtggc cctgctgctg cgcccgggcg ctgactggca gctgcaactc gccgagggcg
      421 ccggcccgcg cgccgcctgg ccgcacgccc tggaactggt ccgcgccctc agcggcggcg
      481 cggattccct gcaacatcac tggaaacgcc ggcaatggaa ctggtcacgc atcggggcct
      541 gagcccctac agcgcgccct actggtggcg cctgatcgcc accgcgctga gcttcaccct
      601 gttcggcgtc ggcggcgtgc tgctgcgcct cgtggtgttt ccgctgctgg ccctgctgcc
      661 cggcgacgcg ctggcgcgtc gcacccgcgc ccgcgccgtg gtcagccgca ccttctactg
      721 gttcgtccag ttcatgttcc gcagcggcgt gctgacctac gaggtggagg gcgccgagcg
      781 tctgggccgc ccggggcaga tggtgatcgc caaccacccc tcgctgatcg acgtggtggt
      841 gctgatcgcc ttcatccgcg acgccaactg cgtggtcaag cagagcctgt gggacgaccc
      901 ctgcatgcgc gggccgatcc gcgccgccgg ctatatcagc aacagcggca gcatggacat
      961 gctcgaagaa gcggccaccg cgctggagca gggccagacc ctgatcgtct tccccgaggg
     1021 cacccgcacc acgccgggac aggcgccgga attccaccgc ggcgcggcgg ccatcgccgt
     1081 gcgcggcgcc cgcatcgtca ccccggtggt gatcagcgta acgccgacca ccctgaccaa
     1141 ggccgagccc tggtgcagca ttccgtcgcg ccgtttccat tttcgcctgc gggtcgggga
     1201 ggatatcgac ccgcggcaat tcaccgagca ggcgccactg ccgattgcct cgcgcaagct
     1261 caacgaccat ctgcaccaac acttcatgag ggagctcgca acagatgagc gatctgcaaa
     1321 ctgagatcaa gaacctgatc atcgaggccc tgggcctgga agacatggcc gccgaggaca
     1381 tcgccgccga cctgaccctg ttcggcgagg gcctgggcct ggattcggtg gacgctctgg
     1441 agctgggcct ggccatccag aagcgcttcg gcatcaagat cgacgccgaa gccaaggaca
     1501 cccgccagca cttcgccaac gtggccagcc tggcggcttt cgtcgcctcg aaacaggccg
     1561 cctgaggacg ttagcgatgc aaagccgtga agatattttc gccaccctgc gcgacgctct
     1621 ggtggagctg ttcgagctgg acgccgagcg cgtgacgctc gacgccaacc tctacgaaga
     1681 cctggaaatc gacagcatcg acgccgtcga cctgatcgac cacatcaagc gccagaccgg
     1741 caagaagatc gccgccgagg agttcaaggc cgtacgcacc gtcggtgacg tggtcgaggc
     1801 cgtgtaccag gtggtcaacg ccgaagcggc cgccggctag gccatggggc gtttgtttgg
     1861 cctgctgctg gtggtggccg gcctgctcta cccctttgcc gtgtattacg gcatggagca
     1921 cctgtcgcca cgcctgttcg ccgccctgct cggcggcctg tggctggccc gcgtcctgac
     1981 gcagccgggc aagcccggcg ccctgtggat ggccggtgcc gccctggcgt tctgcgcgct
     2041 gctcggcctg gccggcgagc cggcgctgct gcgctggtac ccggtgctgc tcaatctgat
     2101 gctgctggcg ctgttcggcc tgtcgctgaa gttcggcccg ccgctggtgg agcgcctggc
     2161 ccgcctgcgc gagccggagc tgccagagca cgcggtgcgc tacacgcgca aggtcaccgg
     2221 cgtgtgggcc ggtttcttcc tggccaatgc cctggtggtg gtggccctga ccctgtgggc
     2281 gccgctggcc tggtggacgc tctacaccgg gctgatcgcc tatgccctga tgggcctgtt
     2341 gtttgccgct gagtggttga tccgccagca agtaaggaga catggatgag ctggctggca
     2401 ctcgccgacc atctgctgca ccccctggcc ggccgcgccg tggcgctgga gccggcgctc
     2461 gaccatgccc agctgcaaca gcgtgccctg cgcctggccg gcgccttgca ggcgcgcggc
     2521 gtgcagcgcg tggcgctgta tctggaagat gccggtgagc tggccatcgc cctgctcggt
     2581 gcctggcgcg ccggcgctgc cgtgctgctg ccggccgatg cccaggcgca gagccgccag
     2641 cgcctgagcg aacaagccga tctatggctg gactcgctcg tagatctgga cggtgagcct
     2701 ctggctcccg ccgccctgaa tctcgacacc tgtcgcctga ccctgtgcac ctccggctcc
     2761 agcggtgagc ccaagctgat cgacaagtcc ctgcgccagc tggccaacga ggtcgatgcc
     2821 ctggaacagc tgtgggggca ggacctcacc ggcgcgacca tcttcggcag cgtcgccgcc
     2881 cagcatatct acggcctgct gttccgcgtg ctctggccgc tgtgcgccgg ccgcccgttc
     2941 tggcgccgcg ccctgccctt ccccgaagac ctgcagcgcg agagtctcgg ccaaccggcc
     3001 ttcgcctggg tcgccagccc ggcgctgctc aagcgcatgg gcgataacct cgactggcag
     3061 gctttgagtt cggtacgccg ggtattttcc tccggcggcg cgctgccggc agaggtatcc
     3121 gtcgaactag accaacagct cgaccagcag ccgaccgaaa tctatggcag ctccgagacc
     3181 ggcggcattg cctggcgcca gggcggcgag ctgtggcagc cgttccccgg cgtggaactg
     3241 agcctgaacg acgagggcgc cctgcgcatc gcctcgccct acctgccggc cgggcacatc
     3301 gagcaaagcg cggatgccgc cgagctgcag gccgatggcc gcttcgccct gcgcgggcgc
     3361 ctggatcgca tcgtcaagct ggaagaaaaa cgcatctccc tgcccatgct ggagcaggcg
     3421 ctgagccaac acgagtgggt cgccgacgcc cgcctcggcg tgatccagga aggccgcgcc
     3481 ttcctcggcg ccctgctggc gctgagcccg gccggcctgc acgccctgcg caaccagggc
     3541 cgcaagaccg tcaccgaaac cctgcgcaag cacctggccg gccactgcga ggccatcgcc
     3601 ctgccgcggc gctggcgcct gctgctggag ctgccctaca g
//
LOCUS       DATIHC010000163         2754 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35608, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000163 DATIHC010000000
VERSION     DATIHC010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2754
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35608"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            322..771
                     /locus_tag="VLF16_02625"
     CDS             322..771
                     /locus_tag="VLF16_02625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007949171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiD C-terminal domain-containing protein"
                     /protein_id="HSX69801.1"
                     /translation="MNDDRAYLEQLLHQDIPLTRALGLGVLAWGDGELRLSLPLAANL
                     NHKSSMFGGSLYCGAVLAGWGWLHLSLREAGIEDGHIVIQHGQIDYPEPVLADAVAVC
                     AAPVAAEWEKFLALYRRRGLARIRLHSRILVSDVEAVRFSGQYVLHR"
     gene            complement(869..2752)
                     /locus_tag="VLF16_02630"
     CDS             complement(869..2752)
                     /locus_tag="VLF16_02630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011920649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase"
                     /protein_id="HSX69802.1"
                     /translation="MSRLPVIVGFGGYNAAGRSSFHHGFRRIVQESLDATTRQETLAG
                     LAVMMKLVQVVDGQFRSHDGQALSPAEIEARHGAEILAGTLVRRIDKRHLDVDATHWQ
                     KNLAVSGAQFTTLRKQLPEPLPASWRVEELDEQQVRVTLDEGCEFKVDSYRALPVKSA
                     GQLPTGFEPGELYHSHFHPRGLQLAVVGATDALRSTGLDWRTIQDRVQPDEVAVFAGS
                     IMSQMDEYGFGGMLQSRLRGGRVTAKQCPLGLNTMPADFINAYVLGSVGTTGSVTGAC
                     ATFLYNLQKAIEQIASGKARVALVGNAEAPITAEIIEGYGAMGALATEEGLRKIEGRD
                     EVDFQRASRPFGDNCGFTLSESSQFLVLMDDALALELGAEIHGAVPDVFINADGFKKS
                     ISAPGPGNYLTLAKAVASAAQLVGIDAVRERSFVHAHGSSTPANRTTESELLDRVAAA
                     FGIDNWPITAAKAFLGHSLATASGDQVIAALGTFRHGLLPGLKTIDKVADDVHRQHLS
                     LETRDRRVEGMEVCFVNSKGFGGNNATGVVLGPQVAERMLRKRHGEAAFSAWQARREA
                     TRAAAGEYDQQALQGGFDILYNFGRDLIDDQQLQFSAEGIRVPGFAQPLLYKKDERYT
                     DML"
BASE COUNT          410 a          903 c          969 g          472 t
ORIGIN      
        1 gcggcttgcg gctagcgcgc ttagcgcggc cagaaaggtg agcggagcga gtcatgccca
       61 ttcgctgcaa gtcaatcagc cgtcatggcg gcatgccgtg cgcctgagcg atgtggctgg
      121 gaagcgctcg gcgtagcccg gatgcgtccg ggaagcaggc agctccgttc ccggattgca
      181 tccgggctac cgtaccgtag ggtgagcgga gcgagtcatg ctcattcact gcaagtaacc
      241 ccgggtgcgg gcccagttcc cttcctcacc cacttttgcc ttgccaggct ccaactcgag
      301 agctctacgc ggactcggaa tatgaatgat gatcgcgcct acctggagca gctgctgcac
      361 caggacatcc cgctgacccg ggccctcggc ctgggcgtgc tggcgtgggg tgacggcgag
      421 ttgcgcctga gcctgccgct ggcggccaac ctcaatcaca agagcagcat gttcggcggc
      481 agcctctact gcggcgcggt gctggccggc tggggctggc tgcacctgag cctgcgcgag
      541 gcgggcatcg aggacggcca catcgtcatc cagcatggcc agatcgacta ccccgagccg
      601 gtgctggccg acgccgtggc ggtctgcgcc gcgccggtcg cggcggaatg ggagaagttt
      661 ctcgccctct accggcgtcg cggcctggcg cggatccggc tgcacagccg catcctcgtg
      721 agcgacgtcg aggcggtgcg tttcagcggt cagtacgtgc tgcaccgctg aaatagccct
      781 cttttcgggt agccgggatg cgatccgggg ccggacttgc ttaatccgga tcggaccccg
      841 gccgtcatcg gcgtggcctg cctctgcctc acaacatatc ggtgtagcgc tcgtccttct
      901 tgtacagcag cggctgggcg aagcccggta cccggatacc ctcggcgctg aactgcagct
      961 gctggtcgtc gatcaggtcg cggccgaagt tgtagagaat gtcgaagcca ccttgcagcg
     1021 cctgctggtc gtattcgccg gccgcggcac gggtcgcttc gcgcctggcc tgccaggcac
     1081 tgaaggcggc ctcgccgtgg cgcttgcgca acatgcgctc ggccacctgg ggccccagca
     1141 ccaccccggt ggcgttgttg ccgccgaaac ccttggagtt gacgaagcac acctccatgc
     1201 cctcgacccg gcgatcacgt gtctccaggc tcaggtgctg gcggtggacg tcgtcggcca
     1261 ccttgtcgat cgtcttcagg cccggcagca ggccatgacg gaaggtgccg agggcggcga
     1321 tcacctggtc gccgctggcg gtggccagcg agtggccgag gaaggccttg gccgcggtga
     1381 tcggccagtt gtcgatgccg aaggcggcgg cgacgcgatc cagcagttcg gattcggtgg
     1441 tgcggttggc cggggtgctg gagccgtggg catggacgaa gctgcgctcg cgcacggcgt
     1501 cgatgccgac cagctgggcg gcgctggcca cggccttggc cagggtcagg tagttgcccg
     1561 ggccgggggc ggagatggac ttcttgaagc cgtcggcgtt gatgaacaca tccggcaccg
     1621 caccgtggat ctcggcaccc agttccaagg ccagggcatc gtccatcagc accaggaact
     1681 ggctggactc ggacagggtg aagccgcagt tgtcgccgaa cgggcggctg gcgcgctgga
     1741 aatcgacctc gtcgcggccc tcgatcttgc gcaggccctc ctcggtggcc agcgcgccca
     1801 tggcgccgta gccttcgatg atctccgcgg tgatcggcgc ctcggcattg ccgaccaggg
     1861 ccacgcgggc cttgccgctg gcgatctgct cgatggcctt ctgcaggttg tagaggaagg
     1921 tggcgcaggc gccggtgacg ctgccggtgg tgccgacgct gcccagcaca taggcgttga
     1981 tgaagtccgc cggcatggtg ttgaggccca gcgggcactg cttggcggtg acgcggccgc
     2041 ccctgaggcg cgactgcagc atgccgccga agccgtactc gtccatctgg ctcatgatgc
     2101 tgccggcgaa cactgccacc tcgtccggct gcacgcggtc ctgaatggtg cgccaatcca
     2161 ggccggtgga gcgcagcgcg tcggtggcgc cgaccaccgc cagctgcagg ccgcgcgggt
     2221 ggaagtgcga gtgatacagc tcgcccggct cgaagcccgt gggcagctgt ccggcggact
     2281 tcaccggcaa cgcgcgatag ctgtcgacct tgaactcgca gccttcatcg agcgtgacgc
     2341 gcacctgctg ctcgtccagc tcctcgaccc gccaactggc cggcagcggc tcgggcagct
     2401 gcttgcgcag ggtggtgaac tgggcgccgc tgacggcgag attcttttgc caatgggtgg
     2461 cgtccacgtc caggtgacgc ttgtcgatgc gtcgcaccag agtgccggcg agaatttcgg
     2521 cgccatgccg cgcctcgatc tcggccgggc tcagggcctg gccgtcgtgg ctacggaact
     2581 ggccgtcaac cacctgcacg agcttcatca tcaccgccag gccggccagg gtctcctggc
     2641 gggtggtggc gtccagcgat tcctggacga tgcggcggaa gccgtggtgg aacgagcttc
     2701 tgcccgcggc gttgtagcca ccgaagccga cgatgacggg gagacgagac atca
//
LOCUS       DATIHC010000164         3339 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30810, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000164 DATIHC010000000
VERSION     DATIHC010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3339
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30810"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..214
                     /locus_tag="VLF16_02635"
     CDS             <1..214
                     /locus_tag="VLF16_02635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015278431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HSX69803.1"
                     /translation="LAVPLTNSGASLSAQLLGAACIFAWVFVASLLVWGLIKLVMGLR
                     VSEEDEYEGVDIAECGLEAYPEFTRK"
     gene            343..768
                     /locus_tag="VLF16_02640"
     CDS             343..768
                     /locus_tag="VLF16_02640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary thiamine-phosphate synthase enzyme
                     YjbQ"
                     /protein_id="HSX69804.1"
                     /translation="MWQQRLIELRARARGFHLVTDEVVTALPELARCRVGLLHLWLQH
                     TSASLTINENADGAVRRDFERFFNRLVPQGESGYEHDYEGPDDLPAHFKSSLLGCQLS
                     LPVSEGRLNLGTWQGIYLGEHRDHGGARWVLATLQGEWR"
     gene            854..1189
                     /gene="sutA"
                     /locus_tag="VLF16_02645"
     CDS             854..1189
                     /gene="sutA"
                     /locus_tag="VLF16_02645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator SutA"
                     /protein_id="HSX69805.1"
                     /translation="MSDEELEQDDLEGADEDDGEELEAADAGDDGEDDGGGDAPESGG
                     GKSSKKAKAAEEVEELPSIEAKQKERDALAKAMEEFLSRGGSVQEIEPNVVADPPKKP
                     DSKYGSRPI"
     gene            complement(1264..1971)
                     /locus_tag="VLF16_02650"
     CDS             complement(1264..1971)
                     /locus_tag="VLF16_02650"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HSX69806.1"
                     /translation="MMSIRLITFDLDDTLWDVAPVMHSAEAALRDWLAAEAPRLGPVP
                     IEHLWAIRARLMEADPGLKHRLSELRRRILLHALLDAGYAQAEADELAELGFQVFLAA
                     RHQVQLFPEVHPTLERLALRYTLGVITNGNADVRRLGLADYFRFALCAEELGIGKPDP
                     HPFQTALRHAGIAAEQAVHIGDHPGDDIAGAKAAGLRAIWFNPQGRDWDGDAEPDAQV
                     QSLAELPALLERWEHAR"
     gene            complement(1968..2861)
                     /gene="xerC"
                     /locus_tag="VLF16_02655"
     CDS             complement(1968..2861)
                     /gene="xerC"
                     /locus_tag="VLF16_02655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009009 - site-specific recombinase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HSX69807.1"
                     /translation="MQSSLDAFLEHLRSERQVSPHTLDGYRRDLLKVLALCEKNAIAR
                     WVDLDTRSLRAMVARLHGHGQSSRSLARLLSAVRGFYQYLNREGLCRHDPANGLSAPK
                     GERRLPRALDADRTAQLLDGGVEDDFIARRDQAMLELFYSSGLRLSELVGLDLDGLDL
                     AAGLVRVRGKGNKARELPVGRKAREALDAWLPLRALCNPQDGAVFVGRQGRRLTPRAI
                     QLRVREAGVRELGQHLHPHMLRHSFASHMLESSQDLRAVQELLGHADIATTQIYTHLD
                     FQHLSNVYDSAHPRAKRKSES"
     gene            complement(2905..>3339)
                     /locus_tag="VLF16_02660"
     CDS             complement(2905..>3339)
                     /locus_tag="VLF16_02660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF484 family protein"
                     /protein_id="HSX69808.1"
                     /translation="VLDMLDAASLEEVIGAVEDSLRHEFQVPFVSLILFSETPLGVGR
                     SVTSAEAHQAIGGLLGGGKTTCGVLRPNELEFLFGADEFAEVGSAAVVSLSHQGLHGV
                     LAIGSPDPQHYKSSLGTLFLGYVAEVLARVLPRFAAPLRSVR"
BASE COUNT          538 a         1060 c         1248 g          493 t
ORIGIN      
        1 gctggccgtg ccattgacca acagcggcgc cagcctgagt gcgcagctgc tcggcgccgc
       61 ctgcatcttc gcctgggtgt tcgtcgccag cctgctggtg tgggggctga tcaagctggt
      121 catgggcctg cgggtcagcg aggaggacga gtacgagggc gtggacatcg ccgagtgcgg
      181 cctggaggcc tatcccgagt tcacccgcaa gtgacagcaa gggcgccgcg gcgccctttt
      241 tcatggtcct gcgacaggcg tgaaaaatcc cgcgcgagcc aggtgaaaag gccaccgact
      301 ctctctaaaa tgcgccgcca acagatgcag cggatgccgg acatgtggca acaacggctg
      361 atcgaattgc gcgcccgggc gcggggtttt cacctggtga ccgacgaggt cgtgacggcg
      421 ttgccggaac tggcccggtg tcgagtcggg ctgctgcacc tgtggctgca gcacacctcg
      481 gcctcgctga ccatcaacga gaacgccgac ggcgcggtgc gacgtgactt cgagcgcttc
      541 ttcaaccgtc tcgtgcccca gggcgagagc ggctacgagc acgactacga ggggccggac
      601 gatctgccgg cgcacttcaa gtcgagcctg ctcggttgtc agctgagcct gccggtcagc
      661 gaaggtcggt tgaacctagg cacctggcaa ggcatctatc tcggcgagca ccgcgaccac
      721 ggcggtgcgc gctgggtgct ggcgaccctg cagggcgagt ggcgctgagg ccgaagattt
      781 ttccagcggc atgtttgcaa tgcgtgccgc tgggctataa gtaacctgct ttgcgcaagt
      841 catgaggtag aacatgagcg acgaagaact ggaacaggac gacctggaag gcgccgacga
      901 ggacgatggc gaggagctgg aagcggccga cgccggcgat gacggcgagg acgatggtgg
      961 cggtgacgca cccgagtccg gtggtggcaa atcgagcaaa aaggccaaag ccgccgaaga
     1021 ggtcgaggag ctgcccagca tcgaagccaa gcagaaggag cgcgacgccc tggccaaggc
     1081 catggaagag ttcctctcgc gtggtggctc ggtgcaggag atcgagccca acgtggtagc
     1141 cgacccgccc aagaagccgg acagcaagta cggcagccgc cccatctgag gacggttgtc
     1201 gccatgaaag agcccgccat ttcggcgggc tttttcatgg gcgcatagcg atgcgggcgg
     1261 gctctagcgg gcgtgctccc agcgctccag cagggccggc agctcggcca ggctctgtac
     1321 ctgcgcatcc ggctcggcgt cgccgtccca gtccctgccc tggggattga accagatggc
     1381 gcgcaggccg gcggccttgg ctccggcgat gtcgtcgccc ggatggtcgc cgatgtgcac
     1441 ggcctgctcc gcggcgatgc ccgcgtggcg cagggcagtc tggaacgggt gcgggtcggg
     1501 cttgccgatg cccagttcct cggcgcacag ggcgaagcgg aagtagtcgg ccaggcccag
     1561 gcggcgcacg tcggcgttgc cgttggtgat cacccccagg gtgtagcgca gggccaggcg
     1621 ctcgagggtc ggatgcacct cggggaacag ctgcacctga tggcgcgcgg cgaggaatac
     1681 ctggaagccc agctcggcca gttcgtcggc ctcggcttgg gcgtagccgg catcgagcag
     1741 cgcatgcagc aggatgcgtc ggcgcagctc gctgagacgg tgcttgagcc cggggtcggc
     1801 ctccatcagg cgcgcgcgga tcgcccacag gtgctcgatg ggcaccggcc ccaggcgcgg
     1861 cgcctcggcg gccagccagt cacgcagggc agcttcggcg ctgtgcatca ccggcgccac
     1921 gtcccacagg gtgtcgtcga ggtcgaaggt gatcaggcgg atgctcatca ggattcgctc
     1981 ttgcgtttgg cccgtgggtg ggcgctgtcg tagacgttcg acaggtgctg aaagtccaag
     2041 tgggtgtaga tctgcgtggt ggcgatgtcg gcgtggccga gcagttcctg caccgcgcgc
     2101 aggtcctgcg aggactccag catatggctg gcgaaggagt gccggagcat gtgcggatgc
     2161 aggtgctggc ccagctcgcg cacgccggcc tcgcgcaccc gcagctggat ggcgcgcggg
     2221 gtcaggcgcc tgccctggcg gccgacgaac acggcgccgt cctgcggatt gcacagggcg
     2281 cgcagcggca gccaggcgtc caacgcctcg cgcgccttgc gtccgaccgg cagctcgcgg
     2341 gccttgttgc ccttgccgcg gacccgcacc aggccggcgg ccaggtcgag gccgtcgagg
     2401 tccaggccga ccagctcgga caggcgcagg ccggaggagt agaagagttc gagcatggcc
     2461 tgatcgcggc gggcgatgaa gtcatcctcc acgccgccat ccagcagctg cgccgtgcgg
     2521 tcggcatcca aggcgcgcgg caggcggcgc tcgcccttgg gcgcggagag accattggcc
     2581 gggtcgtggc ggcacagccc ctcgcggttg aggtactggt agaagccgcg caccgccgag
     2641 agcaggcgcg ccagggagcg gctggactgg ccgtggccat gcaggcgggc gaccatggcg
     2701 cgcaggctgc gggtgtcgag gtcgacccag cgggcgatgg cgttcttctc gcacagggcc
     2761 agcactttca gcagatcgcg gcggtagccg tcgagggtgt gcggcgagac ctggcgctcg
     2821 ctgcgcaggt gttcgaggaa ggcgtcgagg ctgctctgca tggcgactcc ggcaggcgac
     2881 gggcgggccg cgagcggccc gggatcagcg taccgagcgc agtggcgcgg cgaagcgcgg
     2941 cagcacgcgg gccagcacct cggccacgta gccgaggaac agggtgccga ggctgctctt
     3001 gtagtgctgc gggtccgggc tgccgatcgc cagcacgccg tgcaggccct ggtggctgag
     3061 gctgaccacg gcggccgagc cgacctcggc gaactcgtcc gcaccgaaga ggaattccag
     3121 ctcgttgggg cgcagcacgc cgcaggtggt cttgccgccg ccgagcaggc cgccgatggc
     3181 ctggtgcgcc tcggcgctgg tcacgctgcg gccgacgccg agcggcgtct cgctgaacag
     3241 gatcaggctg acgaagggca cctggaactc gtggcgcagg ctgtcttcca cggcgccgat
     3301 gacctcctcg aggctggcgg catcgagcat gtcgagcac
//
LOCUS       DATIHC010000165         2699 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2798, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000165 DATIHC010000000
VERSION     DATIHC010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2699
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2798"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1539
                     /locus_tag="VLF16_02665"
     CDS             <1..1539
                     /locus_tag="VLF16_02665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013713693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HSX69809.1"
                     /translation="VGGYRTDEILGTIDGGTGYLASTGGRADPNALYYITGGGNDFLQ
                     FRVTSTATAQAAAGRLVDSVQTLQQAGARYIMVWLLPDVGKTPALSGTPLAGTVSQLG
                     ADFNAELVRQLSTVNAEVIPLNVPLMLSEVLAAPASYGLAADQDLIGTCFDGCAVENP
                     VYGINGTNPDPTKLLFNDGVHPTIAGQTLIADYAYSLLSAPWQASLLPEMAHGTLRSH
                     QDQLRAQWQADWEAWQAVGQWRSFVNAGGQRQSYEAFDGDADGNGYSLNVGGSYRLDE
                     AWRVGLAAGLYEQDLEVDQTETDYDLRSYLATAFAQYQQNRWWGELAASAGYLDYDDL
                     ERQFDLGPATRQEKGDTDGELWSLSGRVGYDIAQSADSPWHLSPFVSADYARVEVDGY
                     SEDGQSSTALNYGDQKRTSKRLGIGLQGLFDLNQQTRLFGEVAMEREYEDDATEVDMS
                     LRSLPTIGYTLDGYTPDDKTWRASFGVSHRVAPGMSVRGAYTFRDADDSDQHGLNVSL
                     AWDL"
     gene            1692..>2699
                     /locus_tag="VLF16_02670"
     CDS             1692..>2699
                     /locus_tag="VLF16_02670"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012703043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HSX69810.1"
                     /translation="MSRVTLSRYLIEQTRSHNTPADLRFLIEVVARACKEISHAVSKG
                     ALGGVLGSMGTENVQGEVQKKLDVLSNEILLEANEWGGTLAGMASEEMDNAYQIPGKY
                     PKGAYLLVFDPLDGSSNIDVNVSVGTIFSVLRCPSECFSQNDPLGEEAFLQPGTQQVA
                     AGYAIYGPQTMLLLTLGDGVKGFTLDREMGSFVLTHDDIRVPESTAEFAINMSNQRHW
                     EAPVKRYVDELLAGKEGPLGKNYNMRWIASMVADVHRILTRGGLFMYPRDAREPGKPG
                     KLRLMYEANPMSFIIEQAGGAATNGTQRILDIQPESLHQRVAVFLGSKEAVERVTGYH
                     QG"
BASE COUNT          468 a          960 c          865 g          406 t
ORIGIN      
        1 gttggcggct atcgcaccga cgagattctc gggaccatcg acggcggtac cggctatctc
       61 gcctcgaccg gcggccgggc cgatcccaac gcgctctact acatcaccgg tggcggcaac
      121 gatttcctcc agttccgagt gaccagcacc gcaacggccc aggccgcggc ggggcgcctg
      181 gtcgatagcg tgcagacgct gcagcaggcc ggcgcccgct acatcatggt ctggctgctg
      241 ccggacgtgg gcaagacgcc ggccctctcc ggcacgccgc tggccggcac cgtctcccag
      301 ctgggtgcgg acttcaacgc cgagctggtc cgccagctgt ccacggtgaa tgccgaggtc
      361 attccgctca atgtgccgct gatgctctcg gaggtcctgg ctgccccggc cagctatggc
      421 ctggcggcgg atcaggacct gatcggcacc tgcttcgatg gctgcgcagt ggagaatccg
      481 gtctacggca tcaatggcac caacccggac ccgaccaaac tgctgttcaa cgacggcgtg
      541 cacccgacca tcgccggcca gactctgatc gccgactacg cctactcgct gctgtccgcg
      601 ccgtggcagg ccagcctgct gccggagatg gcccacggca ccctgcgctc gcaccaggat
      661 cagctgcgcg cgcagtggca ggcggactgg gaagcctggc aggcggtcgg ccaatggcgg
      721 tccttcgtca acgccggtgg ccagcggcag agctacgagg cgttcgatgg cgacgccgac
      781 ggcaacggct acagcctgaa cgtgggtggc agctatcgcc tcgacgaggc ctggcgtgtc
      841 ggcctggcgg ccggcctgta cgagcaggac ctggaggttg accagaccga gaccgactac
      901 gacctgcgca gctacctggc gaccgccttc gcgcagtatc agcagaaccg ctggtggggc
      961 gagctggcag ccagcgccgg ttacctggat tacgacgatc tcgagcgcca gttcgacctt
     1021 ggcccggcca cccgccagga gaagggcgat accgatggcg agctgtggag cctgagcggc
     1081 cgcgtgggct acgacatcgc ccagagcgcg gacagcccgt ggcacctcag ccccttcgtc
     1141 agcgccgatt acgcgcgggt cgaggtggac ggctattccg aggacggtca gagctccacc
     1201 gcgctcaact acggcgacca gaagcgcact tccaagcgcc tgggcatcgg cctgcagggg
     1261 ctgttcgacc tgaaccagca gacccgcctg ttcggcgagg tggcgatgga gcgtgagtac
     1321 gaggacgacg ccaccgaagt ggacatgtcg ctgcgcagcc tgccgaccat cggctacacg
     1381 ctggacggct acaccccgga cgacaagacc tggcgcgcca gcttcggcgt cagccaccgg
     1441 gtcgcgccgg gcatgtcggt gcgcggcgcc tacaccttcc gcgacgccga cgacagcgac
     1501 cagcacggcc tcaacgtctc cctcgcctgg gacctgtaag gcctcgcatc accgcggccc
     1561 cgcagcgggg ccgcgtcact gaacttcccc cgtgtcgcta tcctctcatc tgctgtcggg
     1621 tccggcagag gcgccggaac ccgcaaccgg ttaaactgcc gccgtttttc tttcccttcc
     1681 ggagcccctc catgtcgcgc gtcaccctga gccgctacct gatcgaacag acccgcagtc
     1741 acaacacccc ggccgacctg cgcttcctca tcgaggtggt ggcccgcgcc tgcaaggaaa
     1801 tcagccatgc cgtgtccaag ggcgccctcg gtggcgtgct cggcagcatg ggcaccgaga
     1861 acgtgcaggg cgaggtgcag aagaagctcg acgtgctttc caacgagatc ctgctggagg
     1921 ccaatgagtg gggcggcacc ctggccggca tggcgtccga ggaaatggac aacgcctacc
     1981 agattcccgg caagtacccg aaaggcgcct acctgctggt gttcgacccg ctggacggct
     2041 ccagcaacat cgacgtcaac gtgtcggtcg gcaccatctt ctccgtactg cgctgcccgt
     2101 ccgagtgctt cagccagaac gatccgctcg gcgaagaggc cttcctccag ccgggcaccc
     2161 agcaggtggc cgccggctac gccatctacg gtccgcagac catgctgctg ctgaccctgg
     2221 gcgacggcgt gaagggcttc accctggatc gcgagatggg cagtttcgtg ctgacccacg
     2281 acgacatccg cgtgccggaa agcaccgccg agttcgccat caacatgtcc aaccagcgcc
     2341 actgggaagc cccggtcaag cgctacgtgg acgagctgct ggccggcaag gaaggcccgc
     2401 tgggcaagaa ctacaacatg cgctggatcg cctccatggt ggcggacgtg caccgcatcc
     2461 tcacccgcgg cggcctgttc atgtacccgc gcgacgcacg cgagcccggc aagcccggca
     2521 agctgcgcct gatgtacgag gccaacccga tgtccttcat catcgagcag gccggcggcg
     2581 ctgccaccaa cggcacccag cgcatcctcg acatccagcc ggagtccctg caccagcgcg
     2641 tggcggtatt cctcggctcg aaggaagcgg tcgagcgcgt caccggctac caccagggc
//
LOCUS       DATIHC010000166         2014 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19117, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000166 DATIHC010000000
VERSION     DATIHC010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2014
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19117"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1272
                     /locus_tag="VLF16_02675"
     CDS             <1..1272
                     /locus_tag="VLF16_02675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HSX69811.1"
                     /translation="EWNHAVAAAAAPDALWWRAFASAELDVLVERGLADNFDLAAAAA
                     RLRQAEASARAAGAPLLPRLDGNLGASREGRLGGDAETAGNLYSGGLAASYEVDLWGR
                     LSAERESAEAELAASRFDRDALRLTLSASLTETWLRQVALAERLRLAELNLANAERVL
                     ATVQARQAAGSATQLELAQQRGLVAEQRRSREELRQQADDIRSALAVLLGQAAPAEPS
                     NAALTALVAPSVSAGLPSELLLRRPDLARAEAQLSAADADLRAARAAMLPRLNLSAGA
                     SGSSGGLNQVFADPIYSLAAALTAPIFDGGALAAERDRTAARREELLAAYRQNIVAAF
                     ADVQVALNAGAGVEAQWQAQQEVQAQAERALQLAERRYRAGAEDLLNLLDAQRTLYAA
                     EDQSAQLRLARLQASVALARALGGGWQPRGE"
     gene            complement(1259..1909)
                     /locus_tag="VLF16_02680"
     CDS             complement(1259..1909)
                     /locus_tag="VLF16_02680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HSX69812.1"
                     /translation="MHAQNILFDLDGTLTDPREGITRSVQYALAQLDIHEPDLAALEH
                     FIGPPLLQCFMHTYQLSEELGWQAVNHYRERFKVTGLYENRVFDGIDSLLGQLVAQGR
                     TLYIATSKPTVFAREIARHFGFDRHFKVIYGSELDGTRTDKVELIRHLLAEEGLDPAD
                     CLMIGDRKHDLIGAHRNGLQAVGIGYGFGSHAELMAESPAWYFTSLAELQQAFTRP"
BASE COUNT          270 a          693 c          740 g          311 t
ORIGIN      
        1 gaatggaacc acgccgttgc cgccgctgcg gcgccggatg cgttgtggtg gcgcgccttc
       61 gccagcgccg agctggatgt cctggtcgag cgcggcctgg ccgacaactt cgatctggct
      121 gccgccgccg cccgtctgcg ccaggccgag gccagcgccc gcgctgccgg cgcaccactg
      181 ctgccgcgcc tggacggcaa cctcggcgcc agccgtgagg gccgtttggg tggcgatgcc
      241 gagaccgctg gcaaccttta cagcggcggc ctggctgcca gctacgaggt cgatctgtgg
      301 ggccgcctgt ccgccgaacg cgagtccgcc gaggccgaat tggctgccag ccgcttcgac
      361 cgcgacgccc tgcgcctgac tcttagcgcg agcctgaccg agacctggct gcgccaggtg
      421 gctttggccg agcgcctgcg cctggccgag ctcaacctgg ccaacgccga gcgggtgctg
      481 gccaccgtgc aggcgcgcca ggcggcgggc tccgccaccc agctggagct ggcccagcag
      541 cgcggcctgg tggccgaaca gcgccgctcc cgcgaggagc tgcgccagca ggccgatgac
      601 atccgcagcg cactggccgt gctgctcggc caggcggcgc cggccgagcc atcgaacgcc
      661 gcgctgaccg cactggtcgc cccctcggtg agtgccggcc tgcccagcga gctgctgttg
      721 cgccgtcccg atctggcccg cgccgaggcg cagctgagcg ccgccgatgc cgacctgcgc
      781 gcggcgcggg cggccatgct gccgcggctg aacctgtcgg ccggcgccag tggctccagc
      841 ggtggtctca accaggtgtt cgccgatccg atctattccc tggctgccgc gctgaccgcg
      901 ccgatcttcg atggcggcgc cctggccgcc gaacgcgacc gcacggcggc gcggcgcgag
      961 gagctgctcg ccgcctaccg gcaaaacatc gtcgcggcct tcgccgatgt gcaggtggcg
     1021 ctcaacgccg gggccggcgt cgaggcccag tggcaggccc agcaggaggt gcaggcccag
     1081 gccgagcgcg ccctgcagct ggccgagcgt cgctaccgcg ccggtgccga ggacctgctc
     1141 aacctgctcg acgctcaacg taccctatac gccgccgagg accagagcgc ccagctacgc
     1201 ctcgcccgtt tgcaggcgag cgtggctttg gctcgggcgc tgggtggtgg ttggcagcct
     1261 aggggcgagt gaaggcctgc tgcagctcgg ccagcgaggt gaagtaccag gccggcgact
     1321 cggccatcag ctcggcgtgg ctgccgaagc cgtagccgat accgacggcc tgcaggccgt
     1381 tgcgatgggc gccgatcagg tcgtgcttgc ggtcgccgat catcaggcag tcggctgggt
     1441 ccaggccttc ctcggcgagc aggtggcgga tcagctcgac cttgtcggtg cgcgtgccat
     1501 ccagctcgct gccgtagatc accttgaagt ggcggtcgaa gccgaagtgg cgggcgatct
     1561 cgcgggcgaa tacggtcggc ttgctggtgg cgatgtacag ggtgcggccc tgcgcgacca
     1621 gttgcccgag cagcgagtcg atgccgtcga acacgcggtt ctcgtagagg ccggtgacct
     1681 tgaaacgctc gcgatagtgg ttcaccgcct gccagccgag ctcctcgctg agctggtagg
     1741 tgtgcatgaa gcactgcagc agcggcgggc cgatgaagtg ctccagcgcc gccaggtcgg
     1801 gctcgtggat atccagctgg gccagcgcgt actgcaccga gcgggtgatg ccctcgcgcg
     1861 ggtcggtgag agtgccgtcg aggtcgaaga ggatgttctg tgcgtgcatg ggggactcgt
     1921 actgcgggtt taccaggtgc aattgttgct ggcgtcgagg gcggttgggg cctcctcgaa
     1981 actgaacacc ttgccgctgg cggcggtgta ggtg
//
LOCUS       DATIHC010000167         1598 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5272, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000167 DATIHC010000000
VERSION     DATIHC010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5272"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1164
                     /locus_tag="VLF16_02685"
     CDS             <1..1164
                     /locus_tag="VLF16_02685"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HSX69813.1"
                     /translation="TLRAERISQMLSMDMDGAEVERLLTALGLGITAQGAGQWQVSVP
                     SHRFDISLEVDLIEELGRLYGYNRLPVRYPQARLAPQAKAEARAELPALRRLLVARGY
                     QEAITYSFIDPKLFELFNPGVAPLQLANPISADMAAMRSSLWPGLVKALEHNLNRQQS
                     RVRLFESGLRFVGQLEGLKQEAMLAGVISGSRLPEAWANGREGVDFYDLKADVEALLG
                     YAGAADAFSFMPGEHPALHPGQTARIEREGRLVGFLGALHPELAKTLGLDQPVFLFEL
                     VLAEVAAGRMPAFSELSRFPEVRRDLALLVDREQPAEAVLATIREAAGEWLTDLRLFD
                     VYHGKGIDPHRKSLAVGLTWQHPSRTLNDDEVNTTTQNILTSLEERFNATLRK"
     gene            1168..1470
                     /gene="ihfA"
                     /locus_tag="VLF16_02690"
     CDS             1168..1470
                     /gene="ihfA"
                     /locus_tag="VLF16_02690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012613949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006417 - regulation of translation
                     [Evidence IEA];
                     GO_process: GO:0075713 - establishment of integrated
                     proviral latency [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HSX69814.1"
                     /translation="MGALTKAEMAERLYEELGLNKREAKELVELFFEEIRHALEDNEQ
                     VKLSGFGNFDLRDKRQRPGRNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGTKS"
     gene            1451..>1598
                     /locus_tag="VLF16_02695"
     CDS             1451..>1598
                     /locus_tag="VLF16_02695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251427.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HSX69815.1"
                     /translation="MLEPSHNDELPPIPGKRYFTIGEVSDLCAVKPHVLRYWEQEFPQ
                     LNPVK"
BASE COUNT          309 a          495 c          499 g          295 t
ORIGIN      
        1 accctgcgtg ccgagcgcat cagccagatg ctgagcatgg atatggacgg tgccgaggtc
       61 gagcgtctgc tcaccgcact gggcctgggc ataaccgctc agggcgctgg tcagtggcag
      121 gtcagcgtgc cgagccaccg cttcgacatc agcttggaag tggacctgat cgaagagctg
      181 ggccgcctgt acggctacaa ccgtctgccg gtgcgctacc cgcaggctcg tctggccccg
      241 caggccaagg ccgaggcccg tgccgagctg ccggccctgc gtcgcctgct ggtggcgcgt
      301 ggttatcagg aagccatcac ctacagcttc atcgatccca agctgttcga gctgttcaat
      361 ccgggcgtgg cgccgctgca actggctaac ccgatctccg ccgacatggc cgccatgcgt
      421 tcctcgctgt ggccggggct ggtcaaggca ctggagcaca acctcaaccg tcagcagtcg
      481 cgcgtgcgtc tgttcgagag cggcctgcgc ttcgtcggcc agctcgaggg cctgaagcag
      541 gaagccatgc tggctggcgt gatcagcggc agccgcctgc cggaagcctg ggccaacggc
      601 cgtgagggcg tggacttcta cgacctcaag gccgatgtcg aggctctgct gggttatgcc
      661 ggcgccgccg atgccttcag ctttatgccg ggcgagcatc cggccctgca tccgggccag
      721 actgcgcgta tcgagcggga agggcgcctg gttggcttcc ttggtgcctt gcacccggag
      781 ctggccaaga ccctcggcct ggaccagcct gtgttcctct tcgaactggt gctggcagaa
      841 gtcgccgccg gtcgcatgcc ggccttcagc gagctctcac gcttccccga agtacgtcgc
      901 gacctggccc tgctggtgga ccgcgagcag ccggccgaag ccgtgctcgc caccatccgc
      961 gaggcggccg gcgaatggct gacggacctc agactgtttg acgtgtatca cggtaaaggt
     1021 attgatccac atagaaaaag cctggccgtt ggcttgacct ggcaacatcc atcgcgcact
     1081 cttaacgacg atgaggtgaa tacaactacg caaaacatcc tcacctcgct ggaagaaagg
     1141 ttcaacgcca cgttaaggaa gtagcgtatg ggggctctga cgaaagctga aatggcggaa
     1201 cgtctgtatg aagagcttgg cctgaataag cgggaagcca aggagttggt ggagctgttt
     1261 ttcgaggaaa tccgccacgc gctggaagac aacgaacagg tcaaattgtc cggtttcggc
     1321 aatttcgacc tgcgcgacaa acgtcagcgc ccgggccgca atcccaagac aggcgaagaa
     1381 atcccgatca cggctcgccg tgttgtcacc tttcgtccgg gccagaaatt gaaggccaga
     1441 gtagaggcat atgctggaac caagtcataa cgacgagctg ccgcctatcc ctggcaaacg
     1501 ctacttcacc atcggcgaag tcagcgacct ctgcgctgtc aagcctcatg ttttgcgtta
     1561 ctgggagcag gagtttcccc agctcaatcc ggtgaagc
//
LOCUS       DATIHC010000168         2697 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5278, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000168 DATIHC010000000
VERSION     DATIHC010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2697
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5278"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..556
                     /locus_tag="VLF16_02700"
     CDS             <1..556
                     /locus_tag="VLF16_02700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012703476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSX69816.1"
                     /translation="IAPVHTLAIYTPEAEAYVGAQRVTRELAALLGRLVEGEAMIARI
                     DANMVRVKQRLATQALPPFYVMTFLDQRHVRLFGKQSIYQGVLDRVGLRNAWTGPTNY
                     WGFTQQGIERLAEEPTAALLYLEPMPPGTADGLASSALWQQLPAVREQRLYGLPPVWS
                     FNGLMAAERFANLLEARLVPENER"
     gene            553..2568
                     /gene="fhuB"
                     /locus_tag="VLF16_02705"
     CDS             553..2568
                     /gene="fhuB"
                     /locus_tag="VLF16_02705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012703477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-hydroxamate ABC transporter permease
                     FhuB"
                     /protein_id="HSX69817.1"
                     /translation="MTDLLAQGPLPTRERRGFSSHPIWLCGLLLALTLGLAFTDLGRR
                     LPAGEWLQGIANPVDGDMAQLILHYSWLPRLCMALLCGAVLALAGTLMQQVLRNPLAS
                     PTTLGVSSGAQLGLLVATLWAPWALDYGREWVALAGGGVAALLVFALAWRRGLAPLTL
                     ILAGLVVTLYLSALNVTLMLIQQQDLNAVFIWGSGSLSQNSWGGVEFLLPRLGLGLLL
                     LLPLLRPLALLELDDSGVKSLGVPLRFLRFVTLTLSVYLAACVVSVVGVIGFIGLAAP
                     ALVRLLGARTFAQRLRWAPVLGGLLLCVTDLGIQRLAGNLAELVPTGAATALLGAPLL
                     LWLLPRLRLAGGQPQSADSQHFERHPFPARRLAPLALLLVGVLLIALGLGRGLEGWQF
                     SLTDIAVLDWRWPRVTAAAAAGCMLALAGCMIQRLTGNPMSSPEVLGISAGAALGLIA
                     LLFLLPYSGPLAQLALGGLGAGLTLLLLLGLSRRSGFAPEKVLLIGISITALFDALQV
                     ILLAGGDPRGQNLLSWMSGSTYFVGPQMAIWVLVCSLLLLVAALPFGRWLELLPLGDG
                     TPRALGVPLGRSRFVLLLLASLLTAGATLIVGPLSFIGLLAPHLARLLGLARAVPQLL
                     GAALLGALVMVAADWLGRTVLFPAQLPAGLLASLLGGGYFMLCLYRR"
BASE COUNT          298 a          942 c          933 g          524 t
ORIGIN      
        1 catcgcgccg gtgcacacgc tggccatcta cacgccagag gccgaggcct atgtcggcgc
       61 gcagcgagtg acccgcgagc tggccgcgtt gcttggtcgc ctggtcgagg gcgaagcgat
      121 gatcgcgcgc atcgacgcca acatggtgcg ggtgaagcag cgcctggcca cgcaggcatt
      181 gccacccttt tatgtgatga cctttctcga ccagcgccac gtgcgcctgt tcggcaaaca
      241 gagcatctat cagggcgtgc tggaccgcgt cggcctgcgc aacgcctgga ccggtccgac
      301 caactactgg ggcttcaccc agcaaggcat cgagcggctg gccgaggagc ccacggccgc
      361 cctgctctat ctcgaaccca tgccgcccgg cacggccgat ggcctggcca gtagtgccct
      421 gtggcaacaa ttgccggcgg tgcgcgagca gcgtctgtac ggcctgccgc cggtttggag
      481 tttcaacggc ctgatggccg ctgagcgctt cgccaacctg ctggaggcgc gtctggtgcc
      541 ggagaacgag cgatgaccga cctgctggcc caggggccgc tgcccacccg cgagcgccgc
      601 ggtttctcca gccacccgat ctggctgtgc ggtctgctgc tggccctgac attgggtctg
      661 gcatttaccg atctcggccg gcgtctgccc gccggcgaat ggctgcaggg cattgccaac
      721 ccggtcgacg gcgacatggc gcagctgatc ctgcattaca gctggctgcc gcgcctgtgc
      781 atggccctgc tctgcggcgc cgttctggcc ctggccggta ccctgatgca gcaggtgctg
      841 cgcaatccgc tggcgtcgcc caccaccctg ggcgtatcca gcggcgccca gctcggcctg
      901 ctggtggcca cgctgtgggc gccctgggcg ctcgattacg gccgtgaatg ggtggcgctg
      961 gccggaggcg gcgtggccgc gctgctggtg ttcgccctgg cctggcgccg cggtctggcg
     1021 ccgctgacgc tgatcctcgc cggtctggtg gtgacgcttt atctcagcgc gctgaacgtg
     1081 accctgatgc tgatccagca gcaggacctc aatgccgtgt tcatctgggg ctcgggctcg
     1141 ctcagccaga acagctgggg tggcgtggaa ttcctgctgc cgcgcctggg cctcggcctg
     1201 ctgcttctgc tgccactgct gcgcccgctg gccctgctgg aactggacga cagcggtgtg
     1261 aagagcctgg gcgtgccgct gcgattcctg cgcttcgtca ccctcaccct ctccgtctat
     1321 ctggctgcct gcgtggtcag tgtcgtcggc gtgatcggct tcatcggcct ggccgcgccg
     1381 gcgctggtgc gcctgctcgg cgcccgtacc ttcgcccagc gtttgcgctg ggctcccgta
     1441 ctgggtggcc tgctgctgtg cgtgaccgac ctcggcatcc agcgcctggc cggcaacctg
     1501 gcggaactgg tgcccaccgg tgccgccacc gccctgctcg gcgccccgct gctgctctgg
     1561 ttgctgccgc gtctgcgcct ggccggcggg cagccacaga gcgccgacag ccagcacttc
     1621 gagcgccatc ccttccccgc tcgccgcctg gcgcctctgg cattgctgct ggtcggcgtg
     1681 ttgctgatcg cgctcggcct gggccgtggc ctggaaggct ggcagttcag cctgaccgac
     1741 atcgccgtgc tcgactggcg ctggccgcgg gtgacagccg ccgcggcggc gggctgcatg
     1801 ttggccctgg ccggctgcat gatccagcgg ttgaccggca accccatgtc cagcccggag
     1861 gtgctcggca tcagtgccgg cgccgccctg ggcctgatcg ccctgctctt cctgctgccc
     1921 tattccggcc ccttggctca attggccctg ggcggactgg gcgccggcct gaccctgctc
     1981 ctgttgctgg gactgtcgcg ccgctccgga ttcgctccgg aaaaggtgct gctgatcggc
     2041 atcagcatca ccgcgctgtt cgatgcgctg caggtgattc tgctggccgg cggcgacccg
     2101 cgcggacaga acctgctcag ctggatgtcc ggctcgacct atttcgtcgg cccgcagatg
     2161 gcgatctggg tgctggtctg cagcctgctt ttgctggtgg ctgccctgcc cttcggtcgc
     2221 tggctggagc tgttgccgct gggcgacggt acgccgcgtg cgctcggcgt gccgctgggg
     2281 cgcagccgtt tcgtgctgct cctgctggcc tcgctgctga ccgctggcgc gaccctgatc
     2341 gtcgggccgc tgagtttcat tggcttgctc gcgccgcatc tggcgcgcct gctcggtctg
     2401 gcgcgcgcgg tgccacagct gctcggcgcg gcgctgctcg gcgcgctggt gatggtggcg
     2461 gcggactggc tggggcgcac cgtattgttc cccgcgcagc tgccggcggg actgctggcc
     2521 tcgctgctgg gtgggggcta tttcatgttg tgtctgtatc ggaggtgacg gggcggcggt
     2581 tgggctgatg gtgtgctgtt cgctacgctc ctgagcccac cctacgtgct gcgggtgagc
     2641 ttccgaggcc tagctaacgc ccgtgaacgc cactcatagc gcgccaaacc aaggccg
//
LOCUS       DATIHC010000169         2381 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_23578, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000169 DATIHC010000000
VERSION     DATIHC010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2381
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23578"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..280
                     /locus_tag="VLF16_02710"
     CDS             <1..280
                     /locus_tag="VLF16_02710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003195180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TOBE domain-containing protein"
                     /protein_id="HSX69818.1"
                     /translation="HSAQRGAGHAERGRLFCRPEAVVINPPVHEDNLFPAQMREITFL
                     GNRCRLSFELDALPGHALLAELAPESMPRLSGAEIWVALPPRSLQVFA"
     gene            280..1992
                     /locus_tag="VLF16_02715"
     CDS             280..1992
                     /locus_tag="VLF16_02715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013691944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0033225 - ATPase-coupled
                     2-aminoethylphosphonate transporter activity [Evidence
                     IEA];
                     GO_process: GO:0033223 - 2-aminoethylphosphonate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative 2-aminoethylphosphonate ABC transporter
                     permease subunit"
                     /protein_id="HSX69819.1"
                     /translation="MQQVAILHKPRTLARRWPADLADRLFVQGGQWLLLALLLLAVLL
                     PLAAMLWRGLAGDPGQGGGLAAASELVASANFRWLLGNSLKSALAVVLIVVPLAYAFA
                     YALQRTCVPGKGLWRGISLLPLLAPSMLPGIALIYLFGNQGVLRHLLTDNVYGFWGIV
                     LGQVIYTFPHALMVLLSALALADARLFDAASSMGASRWRAFRSITWPGSRQGVFAAAC
                     LVFTLCVTDFGVPVVVGGDYQVLALEAYKAVVGQQQFGRGALIGLFLLLPALFSFTVD
                     LWLRRRQRDAMGGRAQVYHPQPSRGRDGAFLLLVLLVSACLLGVLGMAVYSSLVKFWP
                     YDLSLSLHNYAFSELPGGWLAYRNSLLLATCCALFGGVLIFLGSYLLEKTRQSPLTQL
                     LRLLCFIPMAVPGLVLGLGYVFFFNLPANPLHGLYGSLALLVICTVAHFLTTAQMTAS
                     AALRQLDGEFEAAALSLKVPLLRHFFRVTLPICLPALLDIVRYLFVSAMTTVSAVIFL
                     YSPDSLLAAIAVLNMDDAGNVGGAAAMSTLILLTSAAVSLLLAAASRGLLRRSQAWRA
                     APGH"
     gene            2011..>2381
                     /locus_tag="VLF16_02720"
     CDS             2011..>2381
                     /locus_tag="VLF16_02720"
                     /EC_number="3.11.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016782332.1"
                     /note="catalyzes the degradation of phosphonoacetaldehyde
                     to acetaldehyde and phosphate; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonoacetaldehyde hydrolase"
                     /protein_id="HSX69820.1"
                     /translation="MRYQHPDRLQAAILDWAGTVVDFGSFAPTRIFVEAFAQFDIELS
                     LDEARGPMGMGKWDHIRTLCDQPAVAERYQRRFGRAPTDADVTAIYERFMPLQIAKVG
                     EHSALIPGALEAIAALRERGL"
BASE COUNT          273 a          892 c          789 g          427 t
ORIGIN      
        1 gcacagcgct cagcggggtg ccggccacgc cgagcgcggc cgcctgttct gccgccccga
       61 ggcggtggtg atcaacccgc cggtgcacga ggacaacctg ttcccggcgc agatgcgcga
      121 gatcaccttt ctcggcaacc gctgccgtct gagcttcgag ctggacgcgc tgccgggcca
      181 cgccctgctc gccgagctgg cgcccgaatc catgccgcgc ctgagtggcg ccgagatctg
      241 ggtggcactg ccgccgcgca gcctgcaggt gttcgcctga tgcaacaggt cgcgattctg
      301 cacaagcccc ggacgctcgc ccgccgctgg ccggccgacc tggccgaccg cctgttcgtg
      361 cagggcggcc agtggctgtt gctggcgctg ctgctgctcg ccgtgctgct gccgctggcg
      421 gccatgctct ggcgcggcct ggccggcgat ccggggcagg gcggcgggct ggccgcggcg
      481 agcgagctgg tggccagcgc caacttccgc tggctgctcg gcaacagcct gaagagcgcc
      541 ctggccgtgg tgctgatcgt ggtgccgctg gcctacgcct tcgcctatgc cctgcagcgc
      601 acctgcgtgc cgggcaaggg cctgtggcgc ggcatctctc ttctgccgct gctggcgccg
      661 tcgatgctgc cgggcatcgc gctgatctac ctgttcggca accagggcgt gctgcgccac
      721 ctgctgacgg acaacgtcta cggcttctgg ggcatcgtcc tcggccaggt catctacacc
      781 ttcccgcatg cgctgatggt gctgctcagc gccctggccc tggccgacgc gcggctgttc
      841 gacgccgcct cgagcatggg cgcatccagg tggcgcgcgt tccgcagcat cacctggccg
      901 ggcagccgcc agggcgtgtt cgccgcggcc tgcctggtgt tcaccctgtg cgtcaccgac
      961 ttcggcgtgc cagtggtggt gggtggcgac taccaggtgc tggcgctgga ggcctacaag
     1021 gcggtggtcg gccagcagca gttcggccgt ggcgcgctga tcggcctgtt cctcctgctg
     1081 ccggcactgt tcagcttcac cgtcgacctc tggctgcgcc gccgccagcg cgacgccatg
     1141 ggcggccgcg cccaggtcta ccacccacag cccagccgtg gccgcgatgg cgccttcctg
     1201 ctgctggtgc tgctggtcag cgcctgcctg ctcggcgtgc tcggcatggc ggtgtactcg
     1261 tcgctggtca agttctggcc ctacgacctg tcgctgtcgc tgcacaacta cgccttctcc
     1321 gagctgcccg gcggctggct ggcctatcgc aacagcctgt tgctggcgac ctgctgcgca
     1381 ctgttcggcg gcgtgctgat cttcctcggc agctacctgc tggagaagac ccggcagagc
     1441 ccgctgacgc agctgctgcg cctgctctgt ttcattccca tggcggtgcc cggcctggtc
     1501 ctcggtctcg gctacgtctt cttcttcaac ctgccggcca acccgctgca cggcctgtac
     1561 ggcagcctgg ctttgctggt gatctgcacc gtggcgcact tcctgaccac cgcgcagatg
     1621 accgccagcg ccgccctgcg ccagctcgat ggcgagttcg aggccgccgc gctgtcgctg
     1681 aaggtgccgc tgctgcgcca cttcttccgc gtgaccctgc cgatctgcct gccggcgctg
     1741 ctcgacatcg tccgctacct gttcgtctcg gcgatgacca cggtgtcggc ggtgatcttc
     1801 ctctacagcc cggacagcct gctggccgcc atcgccgtgc tgaacatgga cgacgccggc
     1861 aacgtcggcg gcgccgccgc catgtccacc ctgatcctgc tcacgtccgc cgcggtctcg
     1921 ctgctgctgg ccgcggcctc gcgcggcttg ctgcgccggt cccaggcctg gcgcgcggcg
     1981 cccggtcact aaccttttcg gagaacattc atgcgctacc agcaccccga ccgcctgcaa
     2041 gccgccatcc tcgactgggc cggcaccgtg gtcgacttcg gctccttcgc gccgacgcgg
     2101 atcttcgtcg aggccttcgc ccagttcgac atcgagctga gcctggacga ggcgcgcggg
     2161 ccgatgggca tgggcaagtg ggaccacatc cgcaccctgt gcgatcagcc agccgtggcc
     2221 gagcgctacc agcgccgctt cggccgcgcg ccgacggacg ccgacgtcac cgccatttac
     2281 gagcgcttca tgccgctgca gatcgccaag gtcggcgagc actcggcgct gatccccggc
     2341 gccctggagg ccatcgccgc cctgcgcgag cgcggcctgc a
//
LOCUS       DATIHC010000170         1649 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30826, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000170 DATIHC010000000
VERSION     DATIHC010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1649
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30826"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..386
                     /locus_tag="VLF16_02725"
     CDS             <1..386
                     /locus_tag="VLF16_02725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043683 - type IV pilus assembly [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="type IV pilin protein"
                     /protein_id="HSX69821.1"
                     /translation="GILAAIAYPNYQQYQLKAGRSDGHAKLSQLIQAQERFYSQNQSY
                     TTNLGAGGLAFPGVAANAPMTSDEGRYSIAAQACAAGTPIARCVQLVATAIGPQVADA
                     QCGNLGLNSQGVKTETGSGTVESCW"
     gene            complement(655..1602)
                     /gene="ispH"
                     /locus_tag="VLF16_02730"
                     /gene_synonym="lytB"
     CDS             complement(655..1602)
                     /gene="ispH"
                     /locus_tag="VLF16_02730"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA];
                     GO_process: GO:0050992 - dimethylallyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HSX69822.1"
                     /translation="MQIKLANPRGFCAGVDRAIEIVNRALEVFGAPIYVRHEVVHNKF
                     VVEDLRARGAVFVEELDQVPDNTIVIFSAHGVSQAVRKEADRRGLKVFDATCPLVTKV
                     HMEVARYSRDGRECILIGHEGHPEVEGTMGQYDASNGGAIYLVEDEEDVAALQVRDPQ
                     NLAFVTQTTLSMDDTSKVIDALRAKFPSIGGPRKDDICYATQNRQDAVKQLAAECDVV
                     LVVGSPNSSNSNRLRELAERIGTPAYLIDGAEDLRREWFAGISRIGITAGASAPEVLV
                     RGVVDQLRGWGAVEAEELDGRPENVTFSMPKELRIVELG"
BASE COUNT          346 a          506 c          462 g          335 t
ORIGIN      
        1 tcggcatact ggccgccatc gcctatccca actatcagca ataccagctc aaggcgggac
       61 gatctgacgg ccatgcgaag ctgagtcaac tcatccaagc tcaggagcgc ttctattctc
      121 aaaaccaaag ctacaccacc aatctcggag caggcggcct ggcctttccc ggcgttgctg
      181 ccaatgcccc tatgactagc gatgaagggc gctacagcat cgcagcccag gcctgcgccg
      241 ccggcacccc catagctcgc tgtgtgcagc tggtggctac tgccattggt ccacaggtag
      301 cggatgcgca atgcggcaac ctcggcctga atagccaagg tgtaaagacg gaaactggca
      361 gtggcacagt cgaaagctgc tggtaaaaga acaaagaaaa gccggttttt gccggctttt
      421 tatagcgcca cgcactatac tttctaggct cgcgactacg atttccccgc agcatcgcca
      481 tagcgatgca gatatacgcg ctgacgagga accgtgcaca tatcgtgtac atacataggc
      541 tcgatttaat gtcgaaactc tgtacgagcg aatcagatgg cgcatgagcc ctagaaaaac
      601 tagaagaagc gcttagcttt ctattcaaca gtaatgcaat ttacctgcat ttcctcaacc
      661 cagctcgaca atcctgagtt ccttgggcat tgagaaagtc acgttctctg gtcgcccatc
      721 caactcttca gcttcgacag cgccccatcc gcgtagttga tccaccacgc cgcgcaccag
      781 cacttccggt gcggaggcac cagcggtgat accaatgcga gagataccag caaaccactc
      841 ccgccttaaa tcctccgccc catcgatcag ataggccgga gtgcctatac gctccgccag
      901 ctcgcgtaga cggttagagt tagagctatt gggactcccc accaccaaca ccacatcgca
      961 ctccgccgcc agttgtttca ctgcatcctg gcggttctgg gtggcgtagc aaatgtcgtc
     1021 cttgcgcggt ccaccgatgc tggggaactt ggcgcgcagg gcgtcgatga ccttgctggt
     1081 gtcgtccatc gacagggtgg tctgggtgac gaaggccagg ttctgcgggt cgcgcacctg
     1141 cagagctgcg acatcctctt cgtcctccac caggtagatg gcgccgccat tactggcgtc
     1201 gtactgcccc atggtgcctt ccacttccgg gtggccttcg tgaccgatga ggatgcattc
     1261 gcggccgtca cggctgtagc gggcaacttc catatgcacc ttggtcacca gcgggcaggt
     1321 agcgtcgaat accttgaggc cacggcggtc ggcctctttg cgcacggcct gagagacgcc
     1381 gtgagcgctg aagatgacga tggtgttgtc cggcacctgg tccagttctt cgacgaacac
     1441 cgcgccgcgg gcacgcagat cttcgaccac gaacttgttg tgcaccactt cgtggcgcac
     1501 gtagatcggc gcgccgaaca cttccagggc gcggttgacg atctcgatgg cgcggtcgac
     1561 gccggcgcag aagccgcggg gattggcgag tttgatttgc atgctgggta tctcggcgcg
     1621 cgctgaaagc gatggggaga gtgtacgcc
//
LOCUS       DATIHC010000171         1890 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37653, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000171 DATIHC010000000
VERSION     DATIHC010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1890
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37653"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..397)
                     /locus_tag="VLF16_02735"
     CDS             complement(<1..397)
                     /locus_tag="VLF16_02735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HSX69823.1"
                     /translation="MGQLIEGRWHDQWYDTSKDGRFQRENAQRRNWITADGAAGPSGE
                     GGFRAEAGRYHLYVSLACPWAHRTLIYRQLKGLDGLIDVSVVSWLMREQGWTFDKATG
                     SSGDALDDLQFLHQRYTRDDAHYTGRVTVP"
     gene            complement(487..1470)
                     /locus_tag="VLF16_02740"
     CDS             complement(487..1470)
                     /locus_tag="VLF16_02740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013715509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase family protein"
                     /protein_id="HSX69824.1"
                     /translation="MNLVAPPEHPFAQFVRILGKGKRGARNMTRDEAREAMGMLLDGK
                     VEDTQLGAFLMLLRHKEESAEELAGFTEAIRARLNAPRIAVDIDWPTYAGKKRHLPWF
                     LLAIKALSASGVRILIHGGGAHTAGRLYSEQLLQTLEIPLCANWREVGEALDRHNLAF
                     TSLGAWAPQLQRMIDLRNTLGLRSPIHSLARILNPLGARVGLQSIFHPGYQAVHREAS
                     RLLGDHAIVIKGEGGEIEVNPDGICHLFGTQHSENRDEEWPALSAQRHVKPESLELRR
                     LLAFWRGEEHDSYGELAVLSTMALALYGLGQDREAAFAEARKRWDARHPSS"
     gene            complement(1481..1816)
                     /locus_tag="VLF16_02745"
     CDS             complement(1481..1816)
                     /locus_tag="VLF16_02745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TusE/DsrC/DsvC family sulfur relay protein"
                     /protein_id="HSX69825.1"
                     /translation="MSTLLIDGQEITLDKDGFLVELSDWSPAAAEALAEREELPLSAE
                     HWEILELLRGFYAEFQLSPATRPLIKYVALKLGPDKGNSLHLNRLFKGTPAKLAAKLA
                     GLPKPTNCL"
BASE COUNT          296 a          589 c          652 g          353 t
ORIGIN      
        1 gcggcacggt cacccgtccg gtgtagtgag catcgtcacg ggtgtagcgc tgatgcagga
       61 actgcaggtc atccagagcg tcgccgctgg agccggtggc cttgtcgaac gtccagccct
      121 gctcgcgcat cagccagctg accaccgaca cgtcgatcag cccgtccagg cccttgagct
      181 ggcggtagat cagcgtgcgg tgggcccagg ggcaggccag tgacacatag agatggtagc
      241 ggccggcctc ggcacggaag ccgccttcgc cgctcgggcc tgcggcgccg tcggcggtga
      301 tccagttgcg gcgctgcgcg ttctcgcgct ggaagcggcc gtccttgctg gtgtcgtacc
      361 actggtcatg ccagcggcct tcgatgagtt gtcccatggt gaactccact tgctgatagg
      421 cgttggagtc cagtctatgg atttgtgttc gatggataag cgcaaaaaca gggtttcaac
      481 tatcgatcag ctcgatgggt gcctcgcatc ccagcgttta cgggcctcgg cgaaggccgc
      541 ttcacgatct tgacccaggc catacagggc cagtgccatg gtgctcagta ccgccagttc
      601 gccgtagctg tcgtgttcct cgccgcgcca gaaggccagc aggcggcgta gttccagact
      661 ctcaggtttg acgtgacgct gggcggagag ggcgggccat tcctcgtcgc ggttctcgct
      721 gtgctgggtg ccgaacaggt ggcagatccc gtccgggttg acttcgatct cgccgccttc
      781 gcccttgatc acgatggcgt ggtcgcccag cagccgactg gcctcgcggt gcaccgcctg
      841 gtagccgggg tggaagatgc tctgcaggcc gactcgcgcg cccagcggat tgaggatgcg
      901 cgccagcgag tggatcggcg agcgcaggcc cagggtgttg cgcaggtcga tcattcgctg
      961 cagctgcggc gcccaggcgc ccagcgaggt gaaggccagg ttgtggcgat ccagtgcctc
     1021 gccgacttcg cgccagtttg cgcacagcgg aatctccagt gtctgcagca gctgttcgct
     1081 gtacagacgc ccggcggtat gtgcgccgcc gccatggatc agaatgcgca cgccgctggc
     1141 cgacagcgcc ttgatcgcca gcaggaacca gggcaggtga cgcttcttgc cggcgtaggt
     1201 cggccagtcg atatccaccg cgatccgcgg agcattcagg cgtgcgcgaa tggcctcggt
     1261 aaagccggcc agctcctcgg cgctttcctc cttgtgccgc agcagcatga ggaaggcgcc
     1321 gagctgggtg tcttcgacct tgccgtcgag caacatgccc atggcctcgc gggcctcgtc
     1381 gcgggtcatg ttgcgggcgc cacgcttgcc cttgccaagg atgcgcacga attgggcgaa
     1441 gggatgttcc ggcggggcga cgagattcat ggcgagactt tcacagacaa ttcgtgggtt
     1501 tcggcaggcc ggccagcttg gcggcgagct tggcgggcgt gcccttgaac aggcggttga
     1561 ggtgcaggct gttgcccttg tccgggccca gcttgagggc tacgtacttg atcagcgggc
     1621 gggtggccgg cgacagctgg aactcggcgt agaagccgcg cagcagttcg aggatttccc
     1681 aatgctcggc ggacagcggc agctcctcgc gctcggccaa cgcctcggcg gcggccggcg
     1741 accagtcgct cagctcgacc aggaagccgt ccttgtccag ggtgatttcc tggccatcga
     1801 tcagcagggt gctcataacc agctgttgac cttagcgtag cggccgcaga gctcgacgaa
     1861 cgccggatag tcgatcgctt gggcgcgagc
//
LOCUS       DATIHC010000172         1640 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30834, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000172 DATIHC010000000
VERSION     DATIHC010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1640
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30834"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..596)
                     /locus_tag="VLF16_02750"
     CDS             complement(<1..596)
                     /locus_tag="VLF16_02750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="globin domain-containing protein"
                     /protein_id="HSX69826.1"
                     /translation="MLSNEHIALVKATVPLLESGGEALTTHFYRMMLSEYPQVRPLFN
                     QAHQASGDQPRALANGVLMYARHIDRLQALGPLVSQVVQKHVSLQILPEHYPIVGACL
                     LRAIREVLGEEIATDEVIEAWRLAYGQLADLLIGAEEEIYASTERTAGGWRGGRAFRV
                     ARKVAESEEITSFYLQPADGGAILDFIPGQYIGIRLFI"
     gene            746..>1640
                     /locus_tag="VLF16_02755"
     CDS             746..>1640
                     /locus_tag="VLF16_02755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020796708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HSX69827.1"
                     /translation="MTTHPLLRALLPLVDDLSRELEEDERYRRLLAALRALIPCDATA
                     LLRLEGEQLIPLAVDGLSPDTLGRRFALAEHPRFEVLLGDRAPTRFAADSDLPDPYDG
                     LVEDHVGHLEVHDCLGCPLFIDDRPWGLITLDSLEPGSFAQSDLDNLEAFARLAAASV
                     KANDRLLSLTQRAEAERQLAARFREVAGQAAAAELIGQGTAHKRLMAEIDTVAGSDLT
                     VLIAGETGVGKELVAQAIHARSARARRPLISINCAALPDQLVESELFGHVRGAFTGAS
                     GERSGKFELADGGTLFLDEVGD"
BASE COUNT          265 a          558 c          555 g          262 t
ORIGIN      
        1 tcgatgaaca ggcggatgcc gatgtactgg ccgggaatga agtcgaggat ggcgccgccg
       61 tcggccggct gcaggtagaa cgaggtgatt tcctcgctct cggcgacctt gcgcgcgacg
      121 cggaaggcac gtccgccgcg ccagccgcct gcggtgcgct cggtggaggc gtagatctcc
      181 tcctcggcac cgatcagcag gtcggccagc tggccgtagg ccaggcgcca ggcctcgatc
      241 acctcgtcgg tggcgatctc ctcgcccagc acctcacgga tggcgcgcag caggcaagcg
      301 ccgacgatgg ggtagtgctc cggcaaaatc tgcagcgaca catgcttctg caccacctga
      361 ctgaccagcg ggccgagcgc ctgcaggcgg tcgatgtgcc tggcatacat cagcacgccg
      421 ttggccagcg cccgcggctg gtcgccgctg gcctggtgcg cctggttgaa cagcgggcgc
      481 acctgggggt actcggagag catcatgcgg tagaagtggg tggtgagcgc ctcgccgccg
      541 ctttccagca gcggcacggt ggccttgacg agagcgatgt gttcgttgga caacataggg
      601 gtttcctctt gcacgcaggt tattttgcga aaggaggaat cagcattcgt gccagaaata
      661 ttttctatat atatcaataa gttaatttat caaaggtcga tttgaccccc tcgcggcgag
      721 gttgattcga cagcaaggag tctgaatgac aacccatccg ctgcttcgcg ccttgctgcc
      781 gctggtcgac gatctcagtc gcgaactgga agaggacgag cgctaccggc gcttgctcgc
      841 ggccctgcgt gcgctgatcc cctgcgacgc caccgcgctg ctgcgcctgg aaggcgagca
      901 gctgatcccg ctggccgtgg acggcctcag cccggacacc ctcggccggc gcttcgccct
      961 ggccgaacac ccgcgtttcg aggtgctgct gggcgaccgc gcgccgaccc gcttcgccgc
     1021 cgacagcgac ctgccggacc cgtacgacgg cctggtcgag gaccacgtcg gccacctgga
     1081 agtccacgac tgcctgggct gcccgctgtt catcgatgac cgcccttggg ggctgatcac
     1141 cctcgatagc ctggagccgg gcagcttcgc ccagagcgat ctggacaacc tcgaggcctt
     1201 cgcccgcctg gccgccgcct cggtcaaggc caacgaccgc ctgctcagcc tgacccagcg
     1261 cgccgaggcc gagcgccagc tggccgcgcg ttttcgcgag gtggccggcc aggccgccgc
     1321 ggccgaactg atcggccagg gcaccgcgca caagcgcctg atggcggaga tcgacacggt
     1381 ggcgggcagc gacctgaccg tgctgatcgc cggcgaaacc ggcgtcggca aggagctggt
     1441 ggcccaggcc atccacgccc gctcggcgcg ggcgcgccgg ccgctgatca gcatcaactg
     1501 cgccgccctg ccggatcagc tggtggagag cgagctgttc ggccacgtgc gcggcgcctt
     1561 caccggcgcc agcggcgagc gcagcggcaa gttcgaactg gccgacggcg gcacgctgtt
     1621 cctcgacgag gtcggcgaca
//
LOCUS       DATIHC010000173         2374 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21212, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000173 DATIHC010000000
VERSION     DATIHC010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2374)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2374)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2374
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21212"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..791)
                     /locus_tag="VLF16_02760"
     CDS             complement(<1..791)
                     /locus_tag="VLF16_02760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008053644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX69828.1"
                     /translation="MNRNDLRRVDLNLLIVFETLMHERSVTRAAEKLFLGQPAISAAL
                     ARLRSLFDDPLFVRTGRSMEPTARANEIFALLSPALDSISTAVSRATDFDPATSNQVF
                     RIGLSDDVEFALLPPLLRRLRAEAPGVVLVVRRANYLLMPGLLASGEISVGVGYTEEL
                     PANAKRKVLRRSKPKLLRADSVPGAISLDDFCARPHALVSFAGDLTGFIDEELEKLER
                     KRRVVLAVPQFNGLGTLLAGTDIVATVPDYTAAALTAAGGLRAEDL"
     gene            977..1999
                     /locus_tag="VLF16_02765"
     CDS             977..1999
                     /locus_tag="VLF16_02765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017360944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HSX69829.1"
                     /translation="MSRMIRFHQFGDASVLRLEDVPTPKPGHDEVLVRTQALGVGWRD
                     VLWRQNLAPDQAAQLPAGVGFELAGVVEAVGPGIEDLAPGMAVASFPSFSPNQYPAWG
                     DLVLMPRRALARYPDVLSPAEAAVHYTPYMLAYFALVELAEVQPGQRVLITEAAHCLA
                     PQAVQMAKALGAVVIAATSEGDTRAYLRELGADKVIDTEEQDLVLEVERFTDGKGVEV
                     VLDQCAGPQMKLLGDVAATRGKLILYGVNGGNDAAFPACAAFKKHLQFFRHCVLDFTG
                     QPELGLERDEAAVQRALQRINQMTADRLLKPSIAKSFAFEDFIAANQFMETCPAGGRV
                     VMTLES"
     gene            2131..>2374
                     /locus_tag="VLF16_02770"
     CDS             2131..>2374
                     /locus_tag="VLF16_02770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015477306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor"
                     /protein_id="HSX69830.1"
                     /translation="MGMLQSWDEQGVTPLRLAAHTRDHGLESLYAAHRRVLIDAAQGV
                     LGCRARAEDVVHDAFLKLWESGERHAIEDPLRYLFRM"
BASE COUNT          401 a          741 c          837 g          395 t
ORIGIN      
        1 aggtcctcgg cacgcaagcc gccggcggcg gtgagcgcgg cggccgtgta gtccggtacg
       61 gtggcaacta tgtcggtgcc ggccagcaag gtgccgagac cgttgaactg cggcacggcc
      121 aataccaccc ggcgcttgcg ctcgagcttt tccagttcct cgtcgatgaa accggtaagg
      181 tcgccggcga aggacaccag agcatgcggg cgggcacaga agtcatccag gctgattgcc
      241 ccgggcacgc tgtcggcacg cagcagtttg ggtttgctgc gccgcagcac cttgcgcttg
      301 gcattggccg gcagctcctc ggtgtagccg acgcccaccg agatctcccc ggaagccagc
      361 agccccggca tcaacaggta gttggcgcgg cgcaccacca gcaccacacc gggggcctcg
      421 gcgcgcaggc ggcgcagcaa gggcggcagc agggcgaact cgacatcgtc ggacagtccg
      481 atgcggaaca cctggttgct ggtggcgggg tcgaagtcgg tggcacggct gacggcggtg
      541 gagatggagt ccagcgccgg ggagagcagg gcgaagatct cgttggcccg cgcggtgggc
      601 tccatgctgc gcccggtacg cacgaacagc ggatcatcga acaggctgcg caggcgggcg
      661 agggcggcgc tgatcgccgg ctggccgagg aacagcttct ccgccgcgcg tgtcacgctg
      721 cgctcgtgca tcagcgtctc gaacacgatc agcaggttca ggtcgacacg gcgcaggtcg
      781 ttgcggttca tgttcagctt ccatccggga atccgtgaaa ggtgcgggtg cggcgcgccg
      841 acgtcaagcc cggcgctgaa ccggaagcgc tggcggatca tcgctattta tggtgactat
      901 cgatagtggc gggtagtctt gccggaaaag cccgtataga gtccgtggcc atagagatat
      961 gaaggcgagg tgtgtgatgt cccgcatgat ccgtttccac cagttcggcg atgccagcgt
     1021 gctgcgtctg gaggatgtgc cgaccccgaa accggggcac gacgaggtgc tggtgcgtac
     1081 ccaggcgctc ggtgtgggct ggcgcgacgt gctgtggcgg cagaacctgg cgcccgacca
     1141 ggccgcgcag ctgcccgctg gcgtgggctt cgagctggcc ggagtggtgg aggccgtcgg
     1201 ccccggcatc gaggatctcg ctcccggcat ggcagtggcc agtttcccgt ccttcagtcc
     1261 caaccagtat ccggcctggg gcgacctggt gctgatgccg cgccgtgccc tggcccgcta
     1321 tccggatgtg ctcagcccgg ccgaagctgc cgtgcactac accccctaca tgcttgcgta
     1381 ctttgccctg gtcgagctgg ccgaggtgca gccgggccag cgcgtgctga tcaccgaggc
     1441 ggcccattgc ctggcgccgc aggcggtgca gatggccaaa gcactgggcg ccgtggtcat
     1501 cgccgcgacc agcgagggtg atacccgggc ctatctgcgt gaactgggcg ccgacaaggt
     1561 gatcgacacc gaggagcagg acctggtgct ggaggtggaa cgtttcaccg acggcaaagg
     1621 cgtcgaggtg gtgctggacc agtgcgccgg gccgcagatg aagctgctcg gcgatgtcgc
     1681 ggcgacccgc ggcaagctga tcctctacgg cgtcaacggc ggcaacgatg cggcgttccc
     1741 ggcctgcgcg gcgttcaaga agcacctgca gttcttccgc cattgcgtac tggacttcac
     1801 cggccaaccc gaactgggtc tggaacgcga cgaggcggca gtgcagcgtg ccctgcagcg
     1861 gatcaaccag atgaccgccg accgcctgct caagccgagc atcgccaagt cgtttgcctt
     1921 cgaggacttc atcgccgcca accagttcat ggagacctgc ccggcgggcg ggcgggtggt
     1981 gatgacgctg gaatcctgag tctggtactc ctggcagaac gccgcctgcg ggcggcgttt
     2041 tcatttatcg ggaaaactcc tgctcagaat gcttgaattg ataaggatta tcattaagat
     2101 gcgcatcacg tcgaagccga ggatcgggct atggggatgc tgcaaagttg ggacgagcag
     2161 ggcgtcacgc cgctgcgctt ggccgcccac accagggatc atgggctgga gagcctgtac
     2221 gccgctcacc gccgagtact gatcgacgcc gcccagggcg tgctcggctg tcgcgcgcgt
     2281 gccgaggacg tggtgcatga cgccttcctc aagctgtggg agagcggcga gcgccatgcc
     2341 atcgaagacc cgctgcgcta cctgttccgc atgg
//
LOCUS       DATIHC010000174         2038 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_303, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000174 DATIHC010000000
VERSION     DATIHC010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2038
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..406)
                     /locus_tag="VLF16_02775"
     CDS             complement(<1..406)
                     /locus_tag="VLF16_02775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008567040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HSX69831.1"
                     /translation="MHEKVRALHPAAAPRLPDPSLPRLPAAHISRTRLTQALLAGDSR
                     LTLVCAPAGFGKSVLLNECARHAPMNTRVVWLDLLGHPHSPAELLARLAAALQLPHGD
                     GEPCAELGLLLGRVEQPLWIILDDYPRQPCAEL"
     gene            complement(541..1908)
                     /locus_tag="VLF16_02780"
     CDS             complement(541..1908)
                     /locus_tag="VLF16_02780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015276009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1329 domain-containing protein"
                     /protein_id="HSX69832.1"
                     /translation="MKTTRQLISALTLSLLAGSVLAAVSADEAAKLGTSLTPLGAEKA
                     GNADGSIPEWNGGLDKNAANVLSGGFLGNPYANEQPLFTITAQNLDQYKDKLSEGQVA
                     MFKRYPETYKMPVYTSHRSVALPADIYEAAKKSATNTSLIEGGNGLKGFADSRYYAFP
                     IPQNGLEVVWNHITRYRGGNLRRSIVQAAPQANGSYTLVHFEDEVAFPSQTKGLDPKK
                     AENALLFFKQRVTAPSRLAGNVLLVHDSLDQIAEPRMAWLYNAGQRRVRRAPQVAYDG
                     PGTAADGMRTSDNFDMYNGAPNRYDWKLVGKRELYIPYNNYKMQSPDVKYDDIIKAGH
                     TNQDLARYELHRVWEVEATLKSGERNIYAKRRFFVDEDSWQIAVSEHYDGRGQLWRVG
                     QAMLVQQFDQQVPVYAFEALYDIIAGRYIAIGMANEEKTAVQYGIQASAVDFTPAALR
                     NAGVR"
     gene            complement(1934..>2038)
                     /locus_tag="VLF16_02785"
     CDS             complement(1934..>2038)
                     /locus_tag="VLF16_02785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1302 family protein"
                     /protein_id="HSX69833.1"
                     /translation="NTYTASLSYTDFFGGDYNPIEDRDFLAFSVGVNF"
BASE COUNT          305 a          595 c          747 g          391 t
ORIGIN      
        1 cgagctcggc gcagggctgg cgcgggtagt cgtcgaggat gatccacaac ggctgttcga
       61 cgcggccgag cagcaagccc agctccgcgc agggctcgcc atcgccgtgc ggcagttgca
      121 gggcggcggc caggcgggcg agcagctcgg cggggctgtg cggatggccg agcaggtcga
      181 gccacaccac acgggtgttc atgggcgcgt gacgggcgca ttcgttgagc agcacgctct
      241 tgccgaagcc ggcgggggcg cagaccaggg tcaggcggct gtcgccggcc agcagggcct
      301 gggtcaggcg cgtacgggaa atatgcgccg ccggcaggcg tggcagggaa gggtccggta
      361 ggcgcggggc ggcggccgga tgcagggcgc gaaccttttc gtgcatggtc gtggcctcgg
      421 ctcttgtagt tgttgtaagc gagaggtcga tcttatccaa ttcgttgccc acgaggcgct
      481 cgcggacaaa aaaggcgacc actggggtcg cctcaagctg gagcagcgtt gcgttggagc
      541 tcagcgtacg cctgcgttac gcagggcggc cggggtgaag tccacggccg aagcctggat
      601 gccgtactgc acggcggtct tctcctcgtt ggccatgccg atggcgatgt aacggccggc
      661 gatgatgtcg tacagggcct cgaaggcgta caccgggacc tgctggtcga actgctggac
      721 cagcatggcc tggccgacgc gccacagctg gccacggccg tcgtagtgct cggacacggc
      781 gatctgccag ctgtcctcgt cgacgaagaa gcgacgcttg gcgtagatgt tgcgctcgcc
      841 ggacttcagg gtggcctcga cttcccagac gcggtgcagc tcgtagcgcg ccaggtcctg
      901 gttggtgtgg ccggccttga tgatgtcgtc gtacttcacg tccggcgact gcatcttgta
      961 gttgttgtac gggatgtaca gctcgcgctt gccgaccagt ttccagtcgt aacggttggg
     1021 ggcaccgttg tacatgtcga agttgtcgga ggtacgcatg ccgtcggcgg cggtacccgg
     1081 accgtcgtag gcgacctgcg gcgcgcggcg cacacgacgc tggccggcgt tgtacagcca
     1141 agccatgcgc ggctcggcga tctggtccag ggagtcgtgc accagcagca cgttaccggc
     1201 caggcgcgac ggcgcggtga cgcgttgctt gaagaacagc agggcgtttt ccgccttctt
     1261 cgggtccagg cccttggtct ggctggggaa cgccacttcg tcctcgaagt gcaccagggt
     1321 gtaggagccg ttggcctgcg gggcggcctg cacgatgctg cggcgcaggt tgccgccgcg
     1381 gtagcgggtg atgtggttcc acaccacttc caggccgttc tgcgggatcg ggaaggcgta
     1441 gtagcggctg tcggcgaagc ccttcaggcc gttgccaccc tcgatcaggc tggtgttggt
     1501 cgcgctcttc ttagccgcct cgtagatgtc cgccggcagg gccacgctac ggtggctggt
     1561 gtagaccggc atcttgtagg tctcggggta gcgcttgaac atcgcgacct gcccctcgga
     1621 cagcttgtcc ttgtactggt cgaggttctg cgcggtgatg gtgaacagtg gctgttcgtt
     1681 ggcgtagggg ttgcccagga agccaccgga cagaacattg gcggcgttct tgtccaggcc
     1741 gccgttccat tccgggatgc tgccgtcggc gttgccggcc ttctccgcac ccagcggggt
     1801 gaggctggtg ccgagcttgg ccgcttcgtc cgccgacacg gcagcgagca cgctgccggc
     1861 caacagggag agggtgaggg cgctgatcag ttgtcttgtt gttttcatgc tgactgattc
     1921 tctgaaagcc gaattagaag ttcacgccga cgctgaacgc gaggaagtcg cggtcttcga
     1981 tcgggttgta gtcgccgccg aagaagtcgg tgtacgacag gctggcggtg taggtgtt
//
LOCUS       DATIHC010000175         2396 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7444, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000175 DATIHC010000000
VERSION     DATIHC010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2396
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7444"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..493
                     /locus_tag="VLF16_02790"
     CDS             <1..493
                     /locus_tag="VLF16_02790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003192796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Smr/MutS family protein"
                     /protein_id="HSX69834.1"
                     /translation="ADTGKPKADRQRISTLRQAATVKTDEVRVDGLSDQFVIDVGAED
                     ELYWARDGVQDGQMRKLKAGQVAFEGSLDLHGMTVEKARETLWEFFAEAARMEVRCVR
                     VTHGKAVRTDGKRPMIKSHVNTWLRQHPQVLGFASCIAKHGGAGAVYVLLKRTMLEGR
                     DEF"
     gene            complement(581..1132)
                     /locus_tag="VLF16_02795"
     CDS             complement(581..1132)
                     /locus_tag="VLF16_02795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017517251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HSX69835.1"
                     /translation="MSQPRVQPLNPPYAADIQAAFDRVMPPGMPPLKLFRGMAHNPRA
                     LQRMLAGGLLDRGNIELRERELLILRATALCGAEYEWGVHVAAFAGKAGFSAEQIADT
                     CSGRIDPSLWSDAERALLELADSLHASASVDDGLWQRLGVHFSDEQLIECLLLVGFYY
                     AVSFVVNGLRVEREEYAPRFPAQ"
     gene            1212..1553
                     /locus_tag="VLF16_02800"
     CDS             1212..1553
                     /locus_tag="VLF16_02800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017517250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSX69836.1"
                     /translation="MSFPQPGDPVRGSSSGRPIMALLDLLGRRWSLRVLWELHQAPAS
                     FRELQARCEGVSPSVLNTRLGELREARLLENGERGYQLSALGLELVQRCLPLALWAED
                     WAAQLPQRPEK"
     gene            1639..2187
                     /gene="folE"
                     /locus_tag="VLF16_02805"
     CDS             1639..2187
                     /gene="folE"
                     /locus_tag="VLF16_02805"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013791158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HSX69837.1"
                     /translation="MSLEQQYTAILGQLGEDVSREGLLDTPKRAAKAMQYLCRGYQQT
                     LEEVTNGALFSSDSSEMVLVKNIELYSLCEHHLLPFIGKAHVAYIPSGKVLGLSKVAR
                     IVDMYARRLQIQENLSRQIAEAIQQVTGALGVAVVIEAQHMCMMMRGVEKQNSSMVTS
                     VMLGEFRANAATRSEFLSLIKG"
BASE COUNT          438 a          822 c          767 g          369 t
ORIGIN      
        1 ggccgacacc ggcaagccca aggccgaccg ccagcgcatc agcaccctgc gccaggccgc
       61 cacggtgaag accgatgagg ttcgggtcga cggcctctcc gaccagttcg tcatcgatgt
      121 gggcgccgag gacgaactct actgggcccg cgacggcgtg caggacggcc agatgcgcaa
      181 gctcaaggcc ggccaggtgg ccttcgaagg cagcctggac ctgcacggca tgaccgtgga
      241 gaaagcccgc gagacgctct gggaattctt cgccgaagcc gcccgcatgg aagtccgttg
      301 cgtgcgggtg acccacggca aggccgtgcg caccgacggc aagcggccga tgatcaagag
      361 tcacgtcaac acctggctgc gccagcaccc gcaggtgctg ggcttcgcct cctgcatcgc
      421 caagcacggc ggcgccggcg cggtgtacgt gctgctcaag cgcaccatgc tcgagggccg
      481 cgacgagttc taggtttcgc aggaatacct gtgctgggcg aggccttgtg acgcgtcggt
      541 tcacgcattc gtgctgcgct gaacgctctt agcgcgcaag ctactgcgcc ggaaagcgcg
      601 gcgcgtactc ttcccgttcc acccgcaggc cgttcaccac gaacgacacc gcatagtaga
      661 agccgaccag cagcagacac tcgatcagtt gctcgtcgct gaagtgcacg cccaggcgct
      721 gccacaaccc gtcatcgacc gaggcgctgg cgtgcaggct gtccgccagc tccagcagcg
      781 cccgctcggc atcactccat aggctgggat caatacggcc actgcaggta tcggcgatct
      841 gctcggcgct gaaaccggcc ttgccggcga acgccgccac gtgcacgccc cattcgtatt
      901 ccgcaccgca cagcgcggtg gcccgcagga tcagcagttc gcgctcgcgc agctcgatgt
      961 tgccacggtc cagcaggccg ccggcgagca tgcgctgcaa agcgcgcggg ttgtgcgcca
     1021 tgccgcggaa cagcttgagc ggcggcatgc ccggaggcat gacgcggtcg aacgcagcct
     1081 ggatatcggc ggcatagggc gggttcagcg gttgtacgcg aggctggctc atcacgaaga
     1141 ctcctgtcat gctacgaaat aagtagcaaa cagacgctac tccgctacta aaaaagaagc
     1201 aaggagcgag aatgagtttt ccccaacccg gcgatccggt acgcggctcc agcagcggcc
     1261 ggccgatcat ggccctgctc gacctgctcg gccgccgctg gagcctgcgc gtgctctggg
     1321 agctgcacca ggcgccggcc agctttcgcg agctgcaggc gcgctgcgaa ggggtttcac
     1381 cctcggtgct caatacacgc ctgggcgagc tgcgcgaggc acggttgctg gagaacggcg
     1441 agcgtggcta ccagctttcc gcgctgggcc tggagctggt gcaacgctgc ctgccgctgg
     1501 ccttgtgggc cgaggactgg gccgcccagc taccgcagcg gccggaaaag taaacgacgc
     1561 tggcgtatta cgctcttgcc agctccccgg ccgcgcccta ccctgcgccc ctgagcatca
     1621 acccccacag gaagatccat gtccctggaa cagcaataca ccgcgattct cggccagctc
     1681 ggcgaggacg tttcccgcga aggcctgctc gacaccccga agcgggccgc caaggccatg
     1741 cagtacctct gccgcggcta ccagcagacc ctggaagaag tcaccaatgg cgcgctgttc
     1801 agctccgaca gcagcgagat ggtgctggtg aagaacatcg agctgtactc gctgtgcgaa
     1861 caccacctgc tgcccttcat cggcaaggcc cacgtggcct acatccccag cgggaaggtg
     1921 ctcggcctgt ccaaggtggc gcgcatcgtc gacatgtacg cccgtcgcct gcagatccag
     1981 gagaacctca gccggcagat cgccgaggcc atccagcagg tcaccggcgc cctgggcgtc
     2041 gccgtggtca tcgaggcgca gcacatgtgc atgatgatgc gcggtgtgga gaagcagaat
     2101 tcctccatgg tcacctcggt gatgctcggc gaattccgcg ccaacgccgc cacccgcagc
     2161 gagtttctca gcctgatcaa gggctgagcc gccgcgcggt acccgaaagc cggcccagcg
     2221 ccggcttttt catgccttag tggtcgcgtc cgttccaggg cacgaccttg agcggcgaca
     2281 gatcgacccc gtccaggcat cgcgcattga ccgccgccat cgggctgcca tccgggccct
     2341 gggcctcgct gaacggcgag cagccgcaga cgtcgcagaa gtgatgggcg atcttg
//
LOCUS       DATIHC010000176         1576 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7446, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000176 DATIHC010000000
VERSION     DATIHC010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1576
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7446"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1492
                     /locus_tag="VLF16_02810"
     CDS             <1..1492
                     /locus_tag="VLF16_02810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017136891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HSX69838.1"
                     /translation="RLPLPAGLKALGLDREDCSAEPVTPPAVSLQGNDLAYVIYTSGS
                     TGKPKGAGNSHLALANRILWMQEAYQIGAGDVVLQKTPFSFDVSVWEFFWPLITGACL
                     AVAAPGDHRDPQKLVELIQQHKVSTLHFVPSMLQAFLLHPDVEQCASLTRVICSGEAL
                     PAELQVRTFQRLPGASLYNLYGPTEAAIDVSHWTCVEEGRHAVPIGRPIANLRLHILD
                     AQLNPVPQGVPGELYIAGIGLARGYHRRPELTAERFLPDPFDAGGGRMYRTGDLVRWR
                     ADGAIDYLGRIDHQVKIRGFRVELGEIEAQLGAQSGVAEAVVVARDSQIGKQLVGYVV
                     ADPLPADESAWLAGIKAALKVELPEHMVPSILMRLERMPLSPNGKLERRALPEPVWQA
                     RSYRAPQSVLEITLAGIWQEVLEVAQVGLDDNFFELGGHSLLATQAVAVLRQRLGLEL
                     PLRAFFEAQDLAALAAALDGQAPAAAEEEDQDLRDMAALLDELEAL"
BASE COUNT          237 a          558 c          530 g          251 t
ORIGIN      
        1 gcgcctgccg ctgccggccg ggctcaaggc gctgggtctg gatcgcgaag actgcagtgc
       61 cgagccggtc acaccgccgg ctgtcagtct gcagggcaac gatctggcct acgtcatcta
      121 cacctccggc tccaccggca agcccaaggg cgccggcaac agccacctgg ccctggccaa
      181 ccgcatcttg tggatgcagg aggcctatca gatcggcgcc ggcgacgtgg tgctgcagaa
      241 gactccgttc agcttcgacg tttcggtgtg ggaattcttc tggccgctga tcaccggcgc
      301 ctgcctggcc gtggccgcac cgggcgacca ccgtgatccg cagaagctgg tggagctgat
      361 ccagcaacac aaggtcagta cgctgcactt cgtgccgtcg atgctgcagg ccttcctcct
      421 gcacccggat gtggagcagt gcgccagcct gacccgcgtt atctgcagtg gcgaggcgct
      481 gccggcggag ctgcaggtgc gcaccttcca gcgtctgccg ggtgcctccc tgtacaacct
      541 gtacggcccg accgaggcgg ccatcgacgt cagccactgg acctgcgtgg aggagggccg
      601 ccacgccgtg ccgatcggtc gaccgatcgc caacctgcgt ctgcatatcc tcgatgccca
      661 gctcaacccg gtgccgcagg gcgtgcccgg cgagctgtat atcgccggca tcggcctggc
      721 gcgcggctac caccgacgtc cggagctgac cgccgagcgc ttcctgcccg atccgttcga
      781 cgccggaggt gggcgcatgt accgcaccgg cgacctggtg cgctggcgcg ccgatggcgc
      841 catcgactac ctgggccgta tcgaccatca ggtgaagatc cgcggcttcc gtgtcgaact
      901 gggcgagatc gaagcccagc tcggtgccca gtcgggcgtc gccgaggcgg tagtggtggc
      961 ccgcgacagc cagatcggca agcagctggt cggctacgtg gtggccgatc cgctgccggc
     1021 ggatgagtcc gcctggctgg ctggcatcaa ggccgcgctc aaggtcgagc tgcccgagca
     1081 catggtgccg tcgatcctga tgcgcctcga gcgcatgccg ctgtcgccca acggcaagct
     1141 ggagcgccgt gcgctgcccg agccggtctg gcaggcgcgc agctaccggg cgccgcagtc
     1201 cgtgctggaa atcaccctgg ccggtatctg gcaggaagtg ctggaagtgg cccaggttgg
     1261 cctcgacgac aacttcttcg aactcggcgg ccactcgcta ctggccaccc aagccgtggc
     1321 tgtgctgcgc cagcgtctgg gcctggagtt gccactgcgc gccttcttcg aggcgcaaga
     1381 cctggcggcc ctggccgccg ccctcgacgg ccaggctccg gccgccgccg aggaagaaga
     1441 ccaagacctg cgcgacatgg ccgcgctgct cgacgaactg gaggccctgt gaccgcgccc
     1501 atcgacaagg ccgccctggc gcgccgtttc ctcgccctcg gaccgaccga gcagaagcgc
     1561 tttctcgagc tgctgg
//
LOCUS       DATIHC010000177         3636 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42491, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000177 DATIHC010000000
VERSION     DATIHC010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3636)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3636)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3636
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42491"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(11..949)
                     /locus_tag="VLF16_02815"
     CDS             complement(11..949)
                     /locus_tag="VLF16_02815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004578840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triacylglycerol lipase"
                     /protein_id="HSX69839.1"
                     /translation="MKKLLVPALAALGLCASLPALANTQSQTKNPIVLVPGIFAFDTI
                     AGIDYWYQIPSALQSQGAKVHVPKINAFDSSAKRGESLIAQLEQIRAASGGSVKKFNL
                     IGHSQGGLTARYVLNTRPDLVASVTTLNSPHKGSPMADIVTGVAPAGSLRGVAFDVFA
                     NAVGNLVNLLSNNRKSASDVRAMLAEFNKNGAAANNQRYPVGIPTSSCGEGPETVSLN
                     GNSIRLYSMSGTAPLTNVLDISDPLFTVTSLAFGEANDGVTGRCSSHFGKVLKDNYTM
                     NHLDVTNQVLGLVSLFETNPKTLFQSQANRLKNLGL"
     gene            1176..1952
                     /locus_tag="VLF16_02820"
     CDS             1176..1952
                     /locus_tag="VLF16_02820"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSX69840.1"
                     /translation="MTRLPCDAPVLLYLWDKRTFYLSAFDEPLRLSQAAAMLLVALDG
                     ELSINASLTCRSALVPAGLDLVVDSRGSRVAIVYLDVFGEDHALLRPRMRACRGAVQV
                     ALDDEAACIASLDDLHRRIAAPAEAYDALERLINPQQQRPSGFACDPRIVRAVTLIKA
                     DVACNQSIEFLAEQVGLSVPRLTQLFRQKIGIPIRRYRQWHRLFVTSVGVARGLNLTD
                     AAMAAGFTDSAHFSHTFRSIIGMSPSAALAQPRGIRLFAG"
     gene            1996..2814
                     /locus_tag="VLF16_02825"
     CDS             1996..2814
                     /locus_tag="VLF16_02825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019579018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSX69841.1"
                     /translation="MHDSDFPDDAAQTERTRETILRYHLSWRCRDLEAVMALFHPDIE
                     YNDFFQQRTMHLGELREYVEDNLPRRPGEMLEHVDRIRIDGHTAFIQYRFALQGSEGL
                     ASFRTGESITVRDGLIWRINEYATLVHEAGASKGASARPATSRLGLSAWQLSMLAQDL
                     QDYFHKHKPFLDAELDLQQVAAATGYSRNQISHLLNQVLGQSFYRYVNQARLQHLLDG
                     LEAGGDPRRVDELAFAAGFNSLSAFYKCFRERMGVTPKAYLKQISSRARTQDKP"
     gene            2861..>3636
                     /locus_tag="VLF16_02830"
     CDS             2861..>3636
                     /locus_tag="VLF16_02830"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019372517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSX69842.1"
                     /translation="MNPWRNISLWMDQLDEPLAARPSLQADLSADVVIVGAGYTGLWT
                     AYYLKRQAPQLRVVVLEAEIAGFGASGRNGGWLMGNILGEDRLLAGLPAEQRRASFDL
                     LHGIPDEVASVTEREGIACDLRKGGVLYCAARYPEQLSGLQDQLQHLRALGLGEDDYR
                     WLPPAELAEQLRVANPYGALYSPHCATIQPAKLARGLARCVESLGVELYEQSRVTDWQ
                     RGQVRTAHGSVSADWVVPAVEGYAASLPPLGRHQLPVQSLL"
BASE COUNT          582 a         1238 c         1230 g          586 t
ORIGIN      
        1 cccgccggta tcacaggccg aggtttttca ggcgattggc ctggctctga aacagcgtct
       61 tggggttggt ctcgaacagc gacaccagcc ccaggacctg gttggtcaca tccaggtggt
      121 tcatggtgta gttgtccttg aggaccttgc cgaagtggct ggagcagcgc ccggtgacgc
      181 cgtcgtttgc ctcgccgaag gccagcgagg tgacggtgaa cagcgggtcg gagatgtcca
      241 gcacgttggt cagcggcgcg gtgccgctca tggagtacag acggatgctg ttgccgttca
      301 ggctgaccgt ctcggggccc tcgccgcagc tgctggtggg aatgccgacc gggtaacgct
      361 ggttgttggc ggcggcgccg ttcttgttga actcggcgag catggcgcgc acgtccgagg
      421 cgctcttgcg gttgttcgac agcaggttga ccaggttgcc cacggcattg gcgaacacat
      481 cgaaggccac gccgcgcagg ctgccggccg gcgccacgcc ggtgacgata tcggccatcg
      541 gcgagccctt gtgcggcgag ttcagggtgg tcaccgaggc caccagatcg gggcgggtgt
      601 tgagcacgta gcgggcggtg aggccgccct ggctgtggcc gatcaggttg aatttcttca
      661 cgctgccgcc cgaggcggcg cggatctgct ccagctgggc gatcagcgat tcaccgcgct
      721 tggccgagct gtcgaaggca ttgatcttcg gcacgtggac cttggcaccc tggctctgca
      781 gggcgctggg gatctggtac cagtagtcga tgccggcgat ggtgtcgaag gcgaagatgc
      841 cggggacgag gacgatgggg ttcttggtct gcgactgggt attggccagg gcagggaggg
      901 acgcgcagag accgagagcg gccagcgccg ggacgagcag tttcttcatg gtggggtacc
      961 tgtgtgttcg ttttttgttg ttgtagctcc gcacacagca gcggagtggc ggccatcaaa
     1021 gcacccgggt gcggaggcgg cttgtaagaa ctgatgaaat caacccggcg gcgcacaaat
     1081 atttgcgacg cggttggcag atgcactttc atcggcgccg ggcctgtgct aaccctgcca
     1141 cccacaagaa caacaagaac agggcgggaa cgtccatgac caggctcccc tgcgatgccc
     1201 cggtgctgct gtacctgtgg gacaagcgca ccttctacct gagtgccttc gacgagccgc
     1261 tgcgcctgtc ccaggccgcc gccatgctgc tcgtcgccct cgacggcgag ctgtcgatca
     1321 atgcctcgct gacctgccgc agcgccctgg tgccggccgg gctggaccta gtcgtcgaca
     1381 gccgcggctc gcgggtggcg atcgtctacc tggacgtgtt cggcgaggat cacgccctgt
     1441 tgcggccgcg catgcgcgcc tgccgtggcg cggtacaagt cgcgctcgac gacgaggcgg
     1501 cgtgcatcgc cagcctcgac gacctgcacc ggcgcatcgc cgcgccggcc gaggcctacg
     1561 atgcgctgga gcggctgata aacccccagc agcagcgtcc gtccgggttc gcctgcgacc
     1621 cgcgcatcgt gcgcgcggtg acgctgatca aggccgacgt ggcgtgcaac cagtccatcg
     1681 aatttctcgc cgagcaggtt ggcctgtcgg tgccgcggct gacccagctg ttccgccaga
     1741 agatcggcat tcccatccgt cgctaccgcc aatggcaccg gctgttcgtc accagcgtcg
     1801 gcgtagcgcg ggggctgaat ctcaccgatg cggcgatggc cgccggcttc accgactcgg
     1861 cgcacttcag ccacaccttt cgcagcatca tcggcatgag cccctcggcg gcgctggccc
     1921 agccgcgcgg cattcgcctg ttcgccggct gaggaatcgg gcaagctgca tactccagca
     1981 cagccgatcc gccccatgca cgacagcgac tttcccgacg acgccgcgca gaccgagcgc
     2041 acccgcgaga ccatcctgcg ctaccacctc agctggcgct gccgggacct ggaagcggtg
     2101 atggcgctgt tccacccgga catcgaatac aacgacttct tccagcagcg caccatgcac
     2161 ctgggcgagc tgcgcgaata cgtcgaggac aacctgccgc ggcggccggg cgagatgctc
     2221 gagcacgtcg accgcatccg catcgacggc cacaccgcgt tcatccagta ccgcttcgcc
     2281 ctgcagggca gcgaggggct ggcctcgttc cgcaccggtg agtcgatcac cgtgcgcgac
     2341 gggctgatct ggcggatcaa cgaatacgcc accctggtcc acgaggccgg cgcgagcaag
     2401 ggcgccagcg cgcgcccggc caccagtcgc ctggggctgt ccgcctggca gctgagcatg
     2461 ctggcgcagg acctgcagga ctacttccac aagcacaaac ccttcctcga tgcggaactg
     2521 gacctgcagc aggtcgcggc cgccaccggc tacagccgca accagatctc ccatctgctc
     2581 aaccaggtgc tggggcagag cttctaccgc tacgtcaacc aggcccgcct gcagcacctg
     2641 ctcgacggcc tggaggcggg cggcgatccg cggcgggtcg acgaactggc cttcgccgcc
     2701 ggcttcaact cgctgtcggc gttctacaag tgcttccgcg agcgcatggg cgtgacgccc
     2761 aaggcctacc tcaagcaaat ttcctcgcgg gcccgcacgc aagacaagcc ctgagccgcc
     2821 tgactagtct gcgcccatcg actgattggc ggagaccccg atgaacccct ggcgcaacat
     2881 cagcctgtgg atggaccagc tcgacgagcc actcgcggcg cggccgagcc tgcaggccga
     2941 cctgagtgcc gacgtggtga tcgtcggcgc cggctacacc ggcctgtgga cggcctacta
     3001 cctcaagcgc caggcgccgc agttgcgcgt cgtggtgctg gaggcggaga tcgccggctt
     3061 cggtgcctcc gggcgcaacg gcggctggct gatgggcaac atcctcggcg aggaccgcct
     3121 gctcgccggc ctgccagccg agcagcgaag ggcctcgttc gacctgctgc acggcatccc
     3181 cgacgaggtg gccagcgtca ccgagcgcga aggcatcgcc tgcgacctgc gcaagggcgg
     3241 cgtcctgtac tgcgcggcgc gctaccccga acagctgagc ggcctgcagg atcagctgca
     3301 gcacctgcgc gctctggggc tgggggagga cgactaccgc tggctgccgc cggccgagct
     3361 ggccgagcag ctgcgcgtcg ccaaccccta cggcgcgctc tacagcccgc actgcgccac
     3421 catccagccg gccaaactgg cccgcggcct ggcccgctgc gtcgagtccc tgggcgtcga
     3481 actctacgag cagagccggg tgaccgactg gcaacgcggc caggtacgca ccgcccacgg
     3541 cagcgtgagt gccgactggg tggtgccggc ggtggagggc tacgccgcca gcctgccgcc
     3601 gctgggtcgc catcagctgc cggtgcagag cctgct
//
LOCUS       DATIHC010000178         2882 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33204, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000178 DATIHC010000000
VERSION     DATIHC010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2882
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33204"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..107)
                     /locus_tag="VLF16_02835"
     CDS             complement(<1..107)
                     /locus_tag="VLF16_02835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69843.1"
                     /translation="MRKLTQLVLVAAALMATPAFAEMKIAVMNYQMALL"
     gene            complement(144..2528)
                     /gene="bamA"
                     /locus_tag="VLF16_02840"
     CDS             complement(144..2528)
                     /gene="bamA"
                     /locus_tag="VLF16_02840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HSX69844.1"
                     /translation="MKRLLLPAVLAALMIAEVHAESFTITDIRVNGLQRVSAGSLFGA
                     LPLNVGDQVDDRRLVDATRSLFKTGFFQDIQLGREGDVLVINVIERPSISTIEIEGNK
                     AITTEDLMKGLQQSGLAEGEIFQRATLEGVRNELLRQYVAQGRYSAEIEAEVIPQPRN
                     RVALKITINEGSVAAIQHINVVGNSVFPEEDLTSLFELKTTNWLSFFKNDDKYAREKL
                     SGDLERLRSYYLDRGYINMDISSTQVSITPDKKHVYITVNVDEGEKYSVSEVKLSGDL
                     KVPQEEIEKLLLVKQGQVFSRKVMTTTSELITRRLGNEGYTFANVNGVPQPNDEDKTV
                     AIIFVVDPGKRAYVNRINFRGNTKTEDEVLRREMRQMEGGWASTYLIDQSKVRLERLG
                     YFKEVNVETPQVPGTDDQVDVNYTVEEQPSGSITASVGFAQNAGLILGGSISQNNFLG
                     SGNKVSVGLTRSEYQTRYSFGFVDPYWTVDGVSLGYNAFYRTTDYDDLDVDVSSYAVD
                     SYGAGMSIGYPISETSRLTYGLTIQQDSINTGDYTVDEIIDFMEQEGDSYLNLKASIG
                     WSESTLNRGVLANRGHSQSLVLESTVPGSDLSFFKLDYRGQVFAPINDQYTLRFHTEL
                     GFGDAYGSTSELPFYEHYFAGGFNSVRGFEDSSLGPRSTPSRVYDNGTLVYNKQDQYG
                     RYTDPDQDPLPFGGNVLIQGGAELLFPLPFVKDQRSLRTALFWDVGNVYDTSCASSSP
                     SCNNIDFGDLASSVGVGVTWVTALGPLSFSLAAPIKKPEDADTQIFQFSLGQTF"
     gene            complement(2604..>2882)
                     /locus_tag="VLF16_02845"
     CDS             complement(2604..>2882)
                     /locus_tag="VLF16_02845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HSX69845.1"
                     /translation="SGPITIAKVAGASAQSGVADFLNFLAYLSISLGVLNLLPIPVLD
                     GGHLLFYMVEWVRGRPLSERVQGWGIQIGISLVLGVMLLALVNDLSRL"
BASE COUNT          568 a          835 c          907 g          572 t
ORIGIN      
        1 tcgagcaggg ccatctgata gttcatcacc gcgatcttca tctcggcgaa ggcgggggtc
       61 gccatcaggg cggctgcgac cagaaccagt tgagtcaact tacgcacgat gcactcctgc
      121 aacaaaacac gttgtctagc aaattagaaa gtttggccca gcgagaactg gaatatctgg
      181 gtatccgcgt cctcgggctt cttgatcggc gccgccaggc tgaagctcag cggcccgagc
      241 gcggtgaccc aggtcacccc gacaccgacg gagctcgcca gatcgccgaa gtcgatgttg
      301 ttgcagctcg gcgacgagga agcgcaggac gtgtcgtaga cattacccac atcccagaac
      361 aacgcggtac gcagagaacg ctgatccttg acgaacggca gcgggaacag cagttccgca
      421 ccaccctgga tcagcacgtt gccaccgaag ggcagcgggt cctgatccgg atcggtgtaa
      481 cggccgtatt ggtcctgctt gttgtagacc agcgtgccat tgtcgtagac ccgactcggc
      541 gtgctgcgcg gacccaggct gctgtcctcg aagccgcgga ccgagttgaa gccgccggcg
      601 aagtagtgct cgtagaacgg cagctccgag gtggaaccgt aggcatcgcc gaagcccagc
      661 tcggtgtgga aacgcagggt gtactggtcg ttgatcggcg cgaacacctg gccacggtag
      721 tccagcttga agaacgacag gtcgctgccc ggcacggtgc tttccagcac caggctctgg
      781 gaatgaccgc ggttggccag cacgccacgg ttgagggtcg actcggacca accgatggac
      841 gccttcaggt tcaggtagct gtcgccctcc tgttccatga agtcgatgat ctcgtcgacg
      901 gtgtagtcgc cggtgttgat gctgtcctgc tgaatggtca ggccgtaggt cagacgcgag
      961 gtctcgctga tcggatagcc gatgctcatg ccggcgccgt agctgtccac cgcatagctg
     1021 gacacgtcga cgtcgaggtc gtcgtagtcg gtggtgcggt agaaggcgtt gtaaccgagg
     1081 ctgacaccat cgacggtcca gtaggggtcg acgaagccga agctgtagcg ggtctggtac
     1141 tcggagcggg tcagaccaac gctgaccttg ttgccgctac ccaggaagtt gttctggctg
     1201 atggagccac cgaggatcag accggcgttc tgggcgaaac cgacgctggc ggtgatggag
     1261 ccggagggct gctcttccac ggtgtagttg acgtcgacct ggtcgtcggt gcccggcacc
     1321 tgcggggtct cgacgttgac ttccttgaag taacccagac gttccaggcg caccttggac
     1381 tgatcgatca ggtaggtgga ggcccagccg ccttccatct gacgcatctc gcgacgcagc
     1441 acctcgtcct cggtcttggt gttgccgcgg aagttgatgc ggttgacgta ggcacgcttg
     1501 cccgggtcga ccacgaagat gatggcgacg gtcttgtctt cgtcgttggg ctggggcacg
     1561 ccgttgacgt tggcgaaggt gtagccctcg ttgcccagac ggcgggtgat cagctcggaa
     1621 gtggtggtca tcaccttgcg cgagaacacc tgaccctgct tgaccagcag cagcttctcg
     1681 atctcttcct gcggcacctt caggtcaccg gacagcttca cttcgctgac gctgtacttc
     1741 tcgccttcgt cgacgttgac ggtgatatag acgtgcttct tgtccggggt gatggatacc
     1801 tgggtggagg agatatccat gttgatgtag ccgcggtcca ggtagtagga acgcagacgc
     1861 tccaggtcac cggacagctt ttcgcgggcg tacttgtcgt cgttcttgaa gaaggacagc
     1921 cagttggtgg tcttcagctc gaacagcgac gtcaggtctt cctcggggaa gacgctgttg
     1981 ccgaccacgt tgatatgctg gatggcggcg accgagcctt cgttgatggt gatcttcagg
     2041 gcgacgcggt tgcgcggctg cgggatcact tcggcttcga tctcggcaga gtaacggcct
     2101 tgggccacgt actggcgcag cagctcgttg cgcacgcctt cgagagtggc gcgctggaag
     2161 atctcgcctt cggccagacc ggactgctgc agacccttca tcaggtcttc ggtggtgatc
     2221 gccttgttgc cttcgatctc gatggtcgaa atggacgggc gctcgataac gttgatgacc
     2281 agcacatcgc cttcgcggcc gagctggatg tcctggaaga aaccggtctt gaacagcgag
     2341 cgggtcgcgt ctaccaggcg acgatcatcg acctggtcgc cgacgttgag cggcagcgca
     2401 ccgaacaggc tgccggcgga aacccgctgc aggccgttaa cgcgaatgtc agtgatggtg
     2461 aaggactcgg cgtgaacttc ggcgatcatc agtgcggcaa gaaccgcagg tagcagcaga
     2521 cgtttcatga agtcctttct tattccaact gataataaag aaactgccgc gggacgcgcg
     2581 gcagcttcga attcagcttt cgattacaga cgactcagat cattgaccag ggccagcaac
     2641 atcaccccca gcaccagact gataccgatc tgaatgcccc aaccctgtac tcgttcggac
     2701 agcgggcggc cacgcaccca ctcgaccatg tagaacagca aatgcccccc atccaatacg
     2761 ggaatgggca gcaaattgag aacccccagg ctaatgctca gataggcgag gaaattgagg
     2821 aaatccgcca cgccggactg agccgaagcg cccgccactt tagcaatggt tatcggaccg
     2881 ct
//
LOCUS       DATIHC010000179         1585 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_14311, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000179 DATIHC010000000
VERSION     DATIHC010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1585
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14311"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            146..856
                     /locus_tag="VLF16_02850"
     CDS             146..856
                     /locus_tag="VLF16_02850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69846.1"
                     /translation="MTHVSLEHFQPELTEAEHASFEAIVERFNVPLDAELVEDANACL
                     YLNERINATDLQADRIAELKQTRDELLAEFLEHPQSAFMAEVLNYARLCKDRSLVWQD
                     TLGTTVTEFVTSDHERGRADMQFSILQFTSGVVKVRAEVPLRGDLFESEEPFFISADT
                     EGRFEITQRVWRRGQYQYQPLSLEPGEAGEDRLKRFFMFSTEAVHLAYTRNPDERAAI
                     DQQAKRYLLEKKRGYDPR"
     gene            974..1318
                     /gene="rpsF"
                     /locus_tag="VLF16_02855"
     CDS             974..1318
                     /gene="rpsF"
                     /locus_tag="VLF16_02855"
                     /inference="COORDINATES: protein motif:HMM:TIGR00166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HSX69847.1"
                     /translation="MREYELTVLIHPDLEADLETPLKAVRDIVTTGGGKIVNEDNWGK
                     KRLAYRIAKEDFAVYVFMEVELPASAVAKVDATLNITDSVLRHLLVSVDPKAKAAAAE
                     AEAKKSESTEEE"
     gene            1322..>1585
                     /gene="ssb"
                     /locus_tag="VLF16_02860"
     CDS             1322..>1585
                     /gene="ssb"
                     /locus_tag="VLF16_02860"
                     /inference="COORDINATES: protein motif:HMM:TIGR00621.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HSX69848.1"
                     /translation="MAKGFNKVILMGNLTRDPESRTTPSGQSVTNFSLAVNRTWKGAD
                     GQQNEDVSYIDCVAWGKPGEIIAQYLGKGRAVLVSGRLDQRSWD"
BASE COUNT          392 a          454 c          451 g          288 t
ORIGIN      
        1 gacgtgctga ttaccagtgt cgacgacctg tacggcagca acgaagacgg tatctaacaa
       61 atacgcttgc gcttttgtca gaatgagcgt ataccggtag tagaaggcaa atcagacacc
      121 aaaaccttcc gcaaaccaaa cgatcatgac acacgtatcc cttgagcatt ttcagcccga
      181 actcactgag gctgagcacg catcgttcga agcaatcgtc gaacggttca acgtaccgct
      241 cgatgccgag ctggtggaag atgccaatgc ctgcctgtat ctgaacgaac gcatcaacgc
      301 caccgacttg caggccgatc ggatcgccga actgaaacag acgagggatg agttactcgc
      361 ggaatttttg gagcatccgc aatccgcgtt catggcagag gtgctcaact atgcacgcct
      421 ttgtaaggac cgcagcctgg tctggcagga taccctgggg acaaccgtga ccgagttcgt
      481 caccagcgac cacgagcgcg gccgggccga catgcagttc agtatcctcc agttcacctc
      541 cggtgtcgtc aaggtccggg ccgaagtgcc gctgcgcggt gatctgttcg aaagcgaaga
      601 accgttcttt atcagcgctg acaccgaggg acggttcgag atcacgcagc gtgtctggcg
      661 ccgcgggcag taccagtatc agccgttgtc acttgaacca ggtgaagccg gggaagaccg
      721 gctgaagcgg ttctttatgt tctcgaccga ggcggtccat ctggcctata cccgcaaccc
      781 agacgagcgg gctgccatcg accagcaggc caagcggtac ctgctggaaa agaagcgcgg
      841 ctacgatccg cgctagcggg ttttcatttt gaacgatata tggtagaata acctctgtta
      901 tcacgtaacc tgtgattcaa acagaatcac caaggcgggc acccgtccgc cgagtccata
      961 ggaggtctca attatgcgag agtacgaact aaccgtactt atccaccctg atctcgaggc
     1021 tgacctcgag acgccgctca aagctgtacg cgacatcgtc acgaccggcg gcggtaaaat
     1081 cgtcaacgaa gacaactggg gcaagaagcg cttggcatac cgtatcgcca aggaagactt
     1141 cgccgtctac gtcttcatgg aagtcgaact gccggcaagc gccgtcgcca aggtagacgc
     1201 gacgcttaac atcaccgaca gcgtgctgcg acacctgctg gtcagcgtcg atccgaaggc
     1261 aaaggctgct gcagccgaag ccgaagccaa gaaatccgaa agcacggaag aggagtagaa
     1321 catggcaaag gggtttaata aggtcatatt gatgggaaac ctgacacggg atcccgaatc
     1381 acgcacgacg ccttcgggcc agagcgtgac caacttcagc ctggcggtca accgcacctg
     1441 gaagggtgct gacggtcagc agaacgaaga cgtcagctac atcgactgtg tcgcctgggg
     1501 taagcccggc gaaatcatcg cccagtacct cggcaagggc cgtgcggtcc tggtcagcgg
     1561 tcgccttgac cagcgcagct gggac
//
LOCUS       DATIHC010000180         1690 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33206, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000180 DATIHC010000000
VERSION     DATIHC010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1690)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1690)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1690
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33206"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1610)
                     /locus_tag="VLF16_02865"
     CDS             complement(<1..1610)
                     /locus_tag="VLF16_02865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C13 family peptidase"
                     /protein_id="HSX69849.1"
                     /translation="MPRHLAPLALALLLAACGDGEPLLPADAVLPDGGRYLGEVVDGR
                     LQGEGRIDYANGVYYTGRFQDGLFEGPGEWHGASGERYQGNFHLGLFHGQGEFVYSDG
                     TRYQGGFKQGRMHGEGHLQQGGMSYRGEFRDDRYHGLGTLEWPDGSRYQGHFVRGEPQ
                     GKGLRSNAEGEFAGTFKNGMLQGEGSYKGADGESYTGGFRNDLFHGKGRYQNAEGEVW
                     SGRFVDGALTGKGEFRGADGRHYAGEFRYWRFHGQGKLSLADGGVYQGQFANGEYAGE
                     GTLTALDGVRTQGTWNDGELLRQADGQSRPDPLELGLLQQGQLLRQALDAVPASTPAV
                     ELYSLTLAGDGQQSVFLREADYVSRLLRERFGARGNVTLTNHRDHLADRPLATRESLT
                     RAVQALAERSGPEDLVFLYLTSHGSDDHKLSIDQPRLQLADLPASELAALLEPLRDRH
                     KVVVISACYSGGFIPPLKDDKTLVMTAARADRVSFGCSEENDFTYFGRALFAEAFNQT
                     DDLARAFELATARVAEREKADGFEPSEP"
BASE COUNT          237 a          567 c          617 g          269 t
ORIGIN      
        1 tgcggctcgg agggttcgaa accgtcggcc ttttcgcgct cggcgaccct ggccgtggcc
       61 agctcgaagg cgcgggcgag gtcgtcggtc tggttgaacg cctcggcgaa cagggcgcgg
      121 ccgaagtagg tgaagtcgtt ctcctccgag cagccgaagg acacccggtc ggcgcgcgcg
      181 gcggtcatca ccagggtctt gtcgtctttc agcggcggga tgaagccgcc ggaataacac
      241 gccgagatca ccaccacctt gtgacggtcg cgcaacggtt cgagcagcgc cgccagctcg
      301 ctggccggca ggtcggccag ctgcaggcgc ggctggtcga tgctcagctt gtggtcgtcc
      361 gagccgtggc tggtgaggta aaggaacacc aggtcctcgg ggccgctgcg ctcggccagg
      421 gcctgcaccg cgcgggtcag gctctcgcgg gtggccagcg ggcgatcggc cagatggtcg
      481 cggtggttgg tcagggtgac gttgccgcgg gcaccgaaac gctcgcgcag cagccggctg
      541 acgtagtcgg cctcgcgcag gaacacgctt tgctggccgt cgccggccag ggtcaggctg
      601 tacagctcga cggccggggt ggaggcgggc acggcgtcaa gcgcctgccg cagcagctgg
      661 ccctgttgca gcaggcccag ctccagcggg tcgggacgcg actggccatc ggcctgacgc
      721 agcagttcgc cgtcgttcca ggtgccctgg gtgcgaacgc catcgagggc ggtgagggtg
      781 ccttcgccgg cgtattcgcc gttggcgaac tggccctggt agacgccgcc gtcggccagg
      841 ctcagcttgc cctggccatg gaagcgccag taacggaact cgcccgcgta atggcggccg
      901 tctgcgccgc ggaactcgcc cttgccggtc agcgcgccgt cgacgaaacg cccgctccag
      961 acttcgccct cggcgttctg gtagcggccc ttgccgtgga acaggtcgtt gcgaaagcca
     1021 ccggtgtagc tctcgccgtc tgcacccttg tagctgcctt cgccctgcag catgccgttc
     1081 ttgaaggtgc cggcgaactc gccctcggca ttgctgcgca ggcctttgcc ctgcggctcg
     1141 ccgcgcacga agtggccctg gtagcggctg ccgtccggcc attccagagt gcccaggccg
     1201 tggtagcggt cgtcgcggaa ctcgccgcgg tagctcatgc cgccctgctg cagatggccc
     1261 tcgccgtgca tgcggccctg tttgaaaccg ccctggtagc gggtgccgtc gctgtagacg
     1321 aattcgccct ggccatggaa caggcccagg tggaagttgc cctggtagcg ctcgccgctg
     1381 gcgccatgcc attcgccggg gccttcgaac aggccgtcct ggaagcggcc ggtgtagtac
     1441 acgccgttgg cgtagtcgat ccggccctcg ccctgcagac ggccgtccac cacctcgccg
     1501 aggtagcggc cgccgtcggg caacacggca tcggcgggca gcagcggttc gccgtcgccg
     1561 caggcggcga gcagcagggc gagggcgagc ggggcgaggt ggcggggcat ggctgacgtc
     1621 cgggtcgatg atgacgcgag tatgccaaag cgccaatgaa aacggggcgc cagagcgccc
     1681 cgtgcggacc
//
LOCUS       DATIHC010000181         2752 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12116, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000181 DATIHC010000000
VERSION     DATIHC010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2752
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12116"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..516
                     /locus_tag="VLF16_02870"
     CDS             <1..516
                     /locus_tag="VLF16_02870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HSX69850.1"
                     /translation="VVDLEAAGIKVIQIDEAAFREGLPLRKAQWQGYLDWATEAFRLT
                     ASGVRDETQIHTHMCYSEFNDVIESIAAMDADVITIETSRSDMELLDAFERFDYPNEI
                     GPGVYDIHSPRVPDSGEMVRLMRKAARRVPAERLWVNPDCGLKTRGWPETEAALVNMV
                     AAARQLRSELA"
     gene            672..956
                     /locus_tag="VLF16_02875"
     CDS             672..956
                     /locus_tag="VLF16_02875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017676024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69851.1"
                     /translation="MVMHYKVAGHLACGTHGEKLSSTHELGKVKCRNCRKTEAFTEAR
                     RNARNAARRASRKAKVERPAPDWRSAWEARLSGLPGRQRLPRGFGDQAFV"
     gene            complement(953..1663)
                     /locus_tag="VLF16_02880"
     CDS             complement(953..1663)
                     /locus_tag="VLF16_02880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008570293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HSX69852.1"
                     /translation="MPGMTPPLPPFFQFRAESPPLGLADARLVCAGFDHTRLRVDDFQ
                     RCAIEPVRGVAKRQGEYLAGRLCAREALRQLCGQALVPGRDEDGVPIWPAGVVGSITH
                     GAGQAAAIVASDRHWRGLGLDLEKHLSAERAAKLAGEILTPAELERARNLDPQAFAQR
                     VTLTFSLKESLYKALYPLVLRRFYFHDAELIGQDDAGGARLRLLLDLHGDWPKGSELD
                     GRYAEFDDYLISLVAVPR"
     gene            complement(1878..2654)
                     /locus_tag="VLF16_02885"
     CDS             complement(1878..2654)
                     /locus_tag="VLF16_02885"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013694071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HSX69853.1"
                     /translation="MRTLLLALFCLAGTAQAAIQTQEIPYTAADGTRLVGYHAWDDAI
                     EGKRPGVVVVHEWWGLNDYAKRRARDLAALGYSALAVDMYGDGKHTEHPQDAGAFMKA
                     ALADPAVPKARFLAGLELLKAQPQTDAQRLAAIGYCFGGRIVLDMARQGLPLAAVVSF
                     HGALVTDTPATPGSVKAKVLVEHGAADSFITPQQIAAFKAEMDQAGADYRFVELPGAK
                     HGFSNPDADAHKGHGLDIGYQKEADERSWADMQALFKQVF"
BASE COUNT          410 a          921 c          994 g          427 t
ORIGIN      
        1 gtggtcgacc tggaagctgc cggcatcaag gtcatccaga ttgacgaggc cgccttccgc
       61 gaaggcctgc cgctgcgcaa ggcgcaatgg cagggctacc tggattgggc caccgaggcc
      121 ttccgcctga ccgcctccgg cgtgcgcgac gagactcaga tccacactca catgtgctac
      181 agcgagttca acgacgtgat cgagtccatc gccgccatgg acgccgacgt gatcaccatc
      241 gagacctcgc gctcggacat ggagctgctg gatgccttcg agcgcttcga ctaccccaac
      301 gagatcggcc cgggcgtgta cgacatccac tcgccacggg tgccggacag cggcgagatg
      361 gtgcgcctga tgcgcaaggc ggcgcggcgc gtgccggccg agcgcttgtg ggtcaacccc
      421 gactgcggcc tgaagacccg cggctggccg gagaccgagg cggcgctggt caacatggtg
      481 gccgccgcca ggcagctgcg tagcgagctg gcctgagtcg ggctggcgca gacgaaacgg
      541 agcctcgtgc tccgtttcgc gtttgcggcc cctggcgttt ggcttgaacg cagcgccggc
      601 cggcgggtcg gaacccttga ggggcgcgaa ccggccagcg ggccggacgc ccgcaagcaa
      661 ggagaaatcc catggtcatg cactacaagg tcgccggtca cctggcctgc ggcacccatg
      721 gcgagaagct gtcgtccacc cacgaactgg gcaaggtcaa gtgccgcaac tgccgcaaga
      781 ccgaggcctt caccgaggcc cgccgcaatg cgcgcaacgc cgcccgccgg gcctcgcgca
      841 aggccaaggt cgagcgtccg gcgccggact ggcgttccgc ctgggaggcg cgcctcagcg
      901 gcctgccggg acgccagcgc ctgccgcgcg gcttcggtga tcaggcattc gtctagcgcg
      961 gcaccgccac caggctgatc aggtagtcgt cgaactcggc gtagcggccg tccagctcgc
     1021 tacccttggg ccagtcgcca tgcaggtcga gcagcagacg caggcgcgcg ccgccggcgt
     1081 cgtcctgccc gatcagctcg gcatcgtgga aatagaagcg ccgtagcacg agcggataga
     1141 gcgccttgta caggctttcc ttcagcgaga aggtcagggt cacccgctgg gcgaaggcct
     1201 gcgggtccag gttccgggca cgctccagct ccgcgggagt gaggatttcc ccggccagct
     1261 tggcggcgcg ctcggcgctc aggtgcttct ccaggtccag gcccaggccg cgccagtgac
     1321 ggtcgctggc gacgatggcg gctgcctgac ccgcgccatg ggtgatggag ccgaccacgc
     1381 cggcgggcca gatcggcacg ccatcctcgt cgcgccccgg caccagggcc tggccgcaca
     1441 gctggcgcag ggcctcgcgg gcgcacaggc ggccggccag gtattcgccc tggcgcttgg
     1501 ccacgccgcg caccggctcg atggcgcagc gctggaagtc gtcgacccgc agccgggtgt
     1561 gatcgaaccc ggcgcacacc aagcgtgcat ccgccaggcc caggggcggt gattcggcac
     1621 ggaactggaa gaagggcggg agtggggggg tcatgcccgg cattctgccg tggccggctg
     1681 agtcgggcca gccgtttaca tttctttgca cgacgataac gaagcgctac agagcaagcg
     1741 cttgcttatg gtcagaatgc ggcatgcgtt cttcggaacg ctggtgaggt tgtagccacg
     1801 gcacggcgtg tcgccaccgt ggttttactc tactgatcga gtgcgggagt cccttgggac
     1861 tcccgttttt tttgcgctca gaaaacctgc ttgaacagcg cctgcatgtc ggcccaggag
     1921 cgctcgtcgg cctccttctg gtagccgatg tccaggccgt ggcccttgtg cgcgtcggcg
     1981 tccgggttgc tgaagccgtg cttggcgccg ggcagctcga cgaagcggta gtcggcaccg
     2041 gcctggtcca tctcggcctt gaacgcggcg atctgctgcg gggtgatgaa gctgtcggcc
     2101 gcgccgtgct ccaccagcac cttggccttg acgctgccgg gcgtggccgg ggtgtcggtg
     2161 accagcgcgc cgtggaagct caccacggcg gccagcggca agccctggcg cgccatgtcc
     2221 agcacgatgc gtccgccgaa gcagtagccg atggcggcca ggcgctgcgc atcggtctgc
     2281 ggctgggcct tgagcagctc caggccggcg aggaagcgcg ccttgggcac ggccgggtcg
     2341 gccagcgcgg ccttcatgaa ggcgccggcg tcctgcgggt gctcggtgtg cttgccgtcg
     2401 ccgtacatgt cgacggccag ggcgctgtag ccgagggcgg cgaggtcgcg ggcgcgacgc
     2461 ttggcgtagt cgttcagccc ccaccactca tgcaccacca ccacgccggg gcgcttgccc
     2521 tcgatggcgt cgtcccaggc gtggtagccg accaggcgcg tgccgtcggc ggcggtgtag
     2581 gggatctcct gggtctggat ggcggcctgg gcggtgccgg cgaggcagaa cagggcgagc
     2641 agtagtgtgc gcatggtggg cgttccgatc ctggggctgg agttgccaag atagaccagc
     2701 gcgtcgccca cggcttgcac gcctgtgctc tagcgcgccg ggccgggcgg gg
//
LOCUS       DATIHC010000182         4329 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30850, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000182 DATIHC010000000
VERSION     DATIHC010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4329)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4329)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4329
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30850"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..476)
                     /locus_tag="VLF16_02890"
     CDS             complement(<1..476)
                     /locus_tag="VLF16_02890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSX69854.1"
                     /translation="MIHDVVIIGAGPAGLCLARALSGHGLSVVLLERQAEQALVEPAF
                     DGREIALTHGSQALLEKLGLWQCLPAEEIAVLRDAQVLNGPSLFALKIRAEQAGAERL
                     GHLVANRAIRRAAYEAVNECADVQLRCEASVRAIRHHEREVELELVNGEVLRTRLLV"
     gene            complement(550..1560)
                     /locus_tag="VLF16_02895"
     CDS             complement(550..1560)
                     /locus_tag="VLF16_02895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSX69855.1"
                     /translation="MAVLPEERVLTTLHTVALAVQVLQRMGVAPERVLDGSGVRAEDL
                     ETPTRLISHAQELRVLANALAASADPALGLLLGKRMHVSAYGMLGYTLLASRNLGEAL
                     RLAIAHPALLGTYFQLALQPVGDEVRLTAAGYRYDATLNLFNIELCLASLLTVVQDLL
                     GESVRPRRLLLAYPAPAHAASYSEKLGCPVEFDAGCNALCFNPALLERPLPLADPVSH
                     QHGLQQCMQLEAQLHSRHDLRDLIRQQLAGDLIECASLERVATRLHRSERTLRRHLQQ
                     LDTSFQHLLDEVRYDKARQLLLNTDKPIYLIAEELGYSETASFRHAFQRWSGLAPSEL
                     RR"
     gene            1678..2601
                     /locus_tag="VLF16_02900"
     CDS             1678..2601
                     /locus_tag="VLF16_02900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015479433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SdiA-regulated domain-containing protein"
                     /protein_id="HSX69856.1"
                     /translation="MRRLTQARVLLPTLALLFLAALLVVAQQWRLFERGWFAVQEWRH
                     AAEWRDRSIWLPDYRASIQARPIEGLSADVSALTFDPDRRSLFTVTNKDAQIIELSLD
                     GQIVRRIPLVGFGDPEAIEYISRDLYVITDERRQRLFRVHLNDDTDFVDAAESEQLSL
                     GIGLNGNKGFEGLAYDATNHRLFAAKERDPVSIYEIHGFPHTNPDKPFAVHVVENSER
                     DARLFVRDLSSLQYDEGSGHLLALSDESRLVIEINSDGRPISTLSLLGGQHGLESSVP
                     QAEGVAMDDRGGLYLVSEPNLFYVFEKQAAR"
     gene            complement(2649..3320)
                     /gene="rpiA"
                     /locus_tag="VLF16_02905"
     CDS             complement(2649..3320)
                     /gene="rpiA"
                     /locus_tag="VLF16_02905"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HSX69857.1"
                     /translation="MTQDQLKQAVAQAAVDHILPQLDSKSVIGVGTGSTANCFIDALA
                     QHKMAFDGAVASSEATAARLKGHGIPVYDLNAVDGLEFYIDGADESNERLNLIKGGGA
                     ALTREKIVAAVAKTFICIADGSKLVPVLGAFPLPVEVIPMARSHVARQLVKLGGDPVY
                     REGVVTDNGNIILDVHNLSIVEPEKLEADINAIVGVVTNGLFAARPADLLLLGTAEGV
                     KTLKA"
     gene            complement(3385..>4329)
                     /locus_tag="VLF16_02910"
     CDS             complement(3385..>4329)
                     /locus_tag="VLF16_02910"
                     /inference="COORDINATES: protein motif:HMM:NF018319.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HSX69858.1"
                     /translation="NQYSGGSQEILDFDPTPGNVDTFDFGESPENVAGVERHGDDLHI
                     RGGGGDQDVVIIRSFFLDPAFRIERFRFYGEVLTDKDMLRVFHVDPAPVPHADEPPSY
                     TEERIRLSGGEKTDHLAAGDQATYISARWGHDLLIGSRYSDVLNAGNSESPSLAISPH
                     RSDRLFGGPGGDYYRVDSDWRHAEISLTEIHDYDTTPGNIDTLHIRGDESPAYMRITG
                     WERGSLVLELNTNQRITLHNYFLDKAFVIEKIRFDDGTVLDEAAIRQRVGLPPATPPQ
                     ASLSTPGDCCAGAAPAVEADGFLGLVLAAGALLGRAGG"
BASE COUNT          710 a         1416 c         1467 g          736 t
ORIGIN      
        1 accagcagcc gcgtgcgcag cacctcgccg ttgaccagct ccagttcgac ttcgcgctca
       61 tggtggcgaa tggcacgcac gctcgcctcg cagcgcagct gcacatcggc gcactcgttt
      121 accgcttcat aggcggcgcg gcggatcgcg cggttggcga ccagatggcc gaggcgctcg
      181 gcaccggcct gctcggcgcg gatcttcaaa gcgaacagcg aggggccgtt gagcacctgg
      241 gcgtcgcgca gcacggcgat ctcctccgcc ggcaggcact gccacaggcc gagcttttcc
      301 agcaacgcct gggaaccatg ggtcagggcg atctcgcggc catcgaaggc cggttcgacc
      361 aacgcctgct cggcctggcg ctcgagcagg acgaccgaaa gaccatgccc ggacagggcg
      421 cgagccagac acaggccggc cgggccggcg ccgataatga cgacatcgtg gatcatgcag
      481 tgggctccgc gcaggtgaat gcgcggcagt ctagaaccgc ggctgcggcc gcttcttgtc
      541 cccgatcaat cagcggcgca gttcgctggg cgccagcccg ctccagcgct ggaaggcatg
      601 gcggaaactg gcagtctcgc tgtagccgag ctcttcggcg atcaggtaga tcggcttgtc
      661 ggtgttgagc agcagctggc gcgccttgtc gtagcgcacc tcgtcgagca ggtgctggaa
      721 gctggtgtcg agttgttgca gatggcggcg cagggtgcgc tcggaacggt gcaggcgggt
      781 ggcgacacgc tccagactgg cgcactcgat caggtcgccg gccagctgct ggcggatcag
      841 gtcgcgcagg tcgtggcggc tgtgcagctg tgcctccagc tgcatgcact gttgcaggcc
      901 gtgctggtgg ctgaccgggt cggccagcgg cagtggccgc tcgagcagcg ccggattgaa
      961 gcacagcgca ttgcaaccgg cgtcgaactc caccgggcag ccgagcttct cgctgtagct
     1021 ggcggcgtgg gccggcgccg ggtaggcaag caacaggcgg cgcggacgta cggactcgcc
     1081 gagcaggtcc tgcaccacgg tgagcagcga ggccaggcac agctcgatgt tgaacaggtt
     1141 cagcgtcgca tcgtagcggt agccggcggc ggtcaggcgg acctcgtcgc cgaccggctg
     1201 cagcgccagc tggaagtagg tgccgagcag tgccgggtgg gcgatggcca ggcgcagcgc
     1261 ctcgccaaga ttgcgactgg ccagcagggt gtagccgagc atgccgtagg ccgaaacatg
     1321 catgcgcttg cccagcagca gcccgagagc cgggtcggcg ctggcggcca gggcattggc
     1381 cagcacgcgc agttcctgag cgtggctgat caggcgggtc ggggtttcca ggtcttcggc
     1441 gcgcacgccg ctgccgtcca gcacccgttc gggcgccacg cccatgcgct gcagcacctg
     1501 cacggccagg gcgaccgtgt gcagggtggt caatactcgc tcttccggta acactgccat
     1561 gactgccgtt ccgctgcggt ggtgttcggt aactcgcctt cgtcccgatt cagcatctta
     1621 agcttcaatt cagctgcggc tgttttcatg cagcctctct gaatcggaaa cccgtccatg
     1681 cgccgcctga cccaagctcg cgtcctgctg cccaccctgg cattgctctt tctcgcggcc
     1741 ctgctggtgg ttgcccagca atggcgtctg ttcgagcgcg gctggttcgc ggtgcaagaa
     1801 tggcgccatg cggcggagtg gcgcgaccgc tcgatctggc tgccggatta tcgcgccagc
     1861 atccaggccc ggccgatcga ggggctgagc gcggacgtat cggcgctgac cttcgatccg
     1921 gaccggcgca gcctgttcac cgtgaccaac aaggacgcgc agatcatcga gctgtcgctg
     1981 gacggccaga tcgtgcggcg cattccgctg gtcggcttcg gcgacccgga agccatcgaa
     2041 tacatcagcc gcgacctcta cgtgatcacc gacgagcgcc gccagcgcct gttccgcgtg
     2101 cacctgaacg acgacaccga cttcgtcgac gccgccgagt cggaacagct gtcgctgggc
     2161 atcggcctga acggcaacaa gggcttcgag ggcctggcct acgacgccac caaccaccgc
     2221 ctgttcgccg ccaaggagcg cgacccggtg agcatctacg agattcacgg attcccccac
     2281 accaacccgg acaagccgtt cgccgtgcac gtggtggaaa actccgagcg cgatgcgcgc
     2341 ctgttcgtcc gcgacctctc cagcctgcaa tacgacgagg gcagcggcca cctgctggcg
     2401 ctgtcggacg aatcgcgcct ggtgatcgaa atcaactcgg acgggcgccc catcagcact
     2461 ctgtcgctgc tcggcggcca gcatggtttg gagagcagcg tgccgcaggc cgaaggcgtg
     2521 gcgatggacg atcggggcgg cctgtacctg gtcagcgagc ccaacctgtt ctacgtgttc
     2581 gagaaacagg cggcgcgctg aaacgaaaaa acccggcctg ggccgggtcc ttcatgcctg
     2641 caaggcgatc aggccttcag cgtcttcacg ccctcggcgg taccgagcag cagcaggtcg
     2701 gccgggcgcg cggcgaacag gccgttggtg accacgccga cgatggcgtt gatgtccgcc
     2761 tccagcttct ccggttcgac gatgctcagg ttatgcacgt cgaggatgat gttgccgttg
     2821 tcggtgacca cgccctcgcg gtacaccggg tcgccgccca gcttcaccag ctggcgcgcc
     2881 acgtggctgc gggccatggg gatgacttcc accggcagcg gaaaggcgcc gagcaccggc
     2941 accaacttgc tgccatcggc gatgcagatg aaggtcttgg ccaccgccgc gacgatcttc
     3001 tcgcgggtca gcgcggcgcc gccgcccttg atcaggttga ggcgctcgtt gctctcgtcg
     3061 gcgccgtcga tgtagaactc caggccatcc accgcattca ggtcatacac cggaatgcca
     3121 tggcccttga ggcgcgcggc ggtggcttcg gagctggcca cggcaccgtc gaaggccatc
     3181 ttgtgctggg ccagggcgtc gatgaagcag ttggcggtgg agccggtgcc gacgccgatc
     3241 acgctcttgc tgtcgagctg cgggaggatg tggtcgacgg cggcctgggc caccgcctgc
     3301 ttgagctgat cctgggtcat gacgcttctg ccgggcggga aaaacgcgat tatagccgcg
     3361 ctgcccaccc ggccgcagcg cttctcatcc gccggcgcgg ccgagcagag cccccgcggc
     3421 cagcaccagc cccagaaagc cgtcggcctc gaccgccggt gcggcgcccg cgcaacagtc
     3481 gcccggcgta ctcaggctgg cctgcggcgg agtcgccggc ggcagtccca cgcgctggcg
     3541 gatcgccgct tcgtccagca cggtgccgtc gtcgaaacgg atcttttcga tgacgaaggc
     3601 cttgtcgaga aagtagttgt ggagggtgat gcgctgattg gtgttcagct ccagcaccag
     3661 gctaccgcgc tcccagccgg ttatcctcat gtacgcgggg ctttcgtcgc cgcggatatg
     3721 cagggtgtcg atattgccgg gcgtggtgtc gtagtcatgg atttcggtga ggctgatctc
     3781 cgcgtggcgc cagtcggagt cgacccggta atagtcgccg ccgggtccgc cgaacaggcg
     3841 atcgctgcgg tgcgggctga tggcgagtga cggactctcg ctattgccgg cattgaggac
     3901 atcactgtag cggctgccga tcagcagatc gtgcccccag cgcgccgaga tgtaagtcgc
     3961 ctgatccccc gctgcgagat gatcggtctt ctcgcccccg ctcagacgga tgcgttcttc
     4021 ggtatagctc ggcggttcgt cggcatgagg cacgggtgcc ggatcgacgt gaaagacgcg
     4081 cagcatgtcc ttgtcggtca gcacttcacc gtagaagcgg aagcgctcga tgcgaaaggc
     4141 cggatcgagg aagaagctgc ggatgatgac cacgtcttgg tcaccgccac ctccccgtat
     4201 atgcagatca tcgccatggc gctcgacgcc cgccacgttt tccggagact caccgaagtc
     4261 gaaggtatcg acattgcccg gggtgggatc gaaatcgagt atctcctggg aacccccaga
     4321 gtactgatt
//
LOCUS       DATIHC010000183         2214 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7470, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000183 DATIHC010000000
VERSION     DATIHC010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2214
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7470"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(166..1575)
                     /locus_tag="VLF16_02915"
     CDS             complement(166..1575)
                     /locus_tag="VLF16_02915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020480123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HSX69859.1"
                     /translation="MTLDALRLEVPDILEEDATPLADLNARLADARRQPGDDGLSQAL
                     DLLFRLNRSAMTLLERQRALQSFCEEYRHYCTARRSGTAPSNLFVQLCEELAAGFKRL
                     LLQILQGRQPSRPHLAWCLYMAEHFLAQSLMRHYQLYQEPPASLWSDSHLLYWIGEHQ
                     GCLDEHVAASFQPAPASSLRGLYQQTLMLALSNPFHLAEGECELLFGALTPLAELARL
                     LPWDEDEEGEGPLIDLRQSQPCLPYDAEPQGEVEYLRRLELGALLVALHEPAPLQSSH
                     QRELLERVRPHWLGRQQRRHPRADFSADCSLVIGLPEVHAQLLEKRPPNSSAQMLDAS
                     PGGARLICQAEFAQQLPVGQLVLVLTHSGTPTLALVRWRHLNREGLHLGLRYLKGLPR
                     AVWLRRAPSAQTHPGVLQSTPEPGAGWHHGLWLPCGQFVEGENLWLQLANVNNQAVLP
                     LPAANLSTPSVIRHPLRLA"
     gene            1606..2073
                     /locus_tag="VLF16_02920"
     CDS             1606..2073
                     /locus_tag="VLF16_02920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015478295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HSX69860.1"
                     /translation="MGRPLRMVMGLCAGLLLAGCADDWGVDQHGRKVTAEQLEGQWLV
                     INYWAEWCKPCRTEIPQLNRLEAELQGKGARVIGVNFDALRGEKLGKAAGAFDIRFTV
                     LAQDPAPRLELPRNDVLPVTYIIDANGRLRERLVGEQTAAGLQARLAHWQAEE"
     gene            2079..>2214
                     /locus_tag="VLF16_02925"
     CDS             2079..>2214
                     /locus_tag="VLF16_02925"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003102385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HSX69861.1"
                     /translation="MQICLHGFVSGKVQGVSFRQHTLEEAERLDLNGWVRNLADGRVE
                     V"
BASE COUNT          361 a          677 c          804 g          372 t
ORIGIN      
        1 gattataggc gggggctttg gccggaaact gtgcactgag gcttcggccg gcgagacctg
       61 tgtcgcagaa cccggctgaa tgttcagggg cttttcggtg tctggcgcgg cgcggttaaa
      121 ccggcttctt gcccgacaga cctttctcat agtgctcggc agccattagg ccaggcgcag
      181 cgggtggcgg atcaccgagg gcgtactgag gttggccgct ggcagtggca gcacggcctg
      241 gttgttgacg ttggccagtt gcagccagag gttttcgccc tccacgaact ggccacaggg
      301 cagccacagg ccgtggtgcc aacccgcgcc cggttcgggc gtgctctgca gcacgccggg
      361 gtgggtctgt gcgctgggcg cccggcgcag ccatacggcg cgcggcaggc ccttgagata
      421 gcgcagcccg aggtgcagtc cttcacggtt gagatggcgc cagcgtacca gggccagggt
      481 cggggtcccg ctgtgggtca gcaccaggac cagttggccc accggcagct gctgggcgaa
      541 ctcggcctgg cagatcaggc gtgcgccacc ggggctggcg tcgagcattt gagccgagct
      601 gttcggcggc cgcttctcca gcaactgggc atgtacctcc ggcaacccga tcaccaggct
      661 gcagtcggcg ctgaagtcgg cgcgcggatg gcggcgttgc tggcgaccca gccaatgcgg
      721 acgcacccgc tccagtaatt cgcgttgatg gctgctctgc agcggcgccg gttcgtggag
      781 cgcgaccagc agggcgccca gctccaggcg ccgcaggtat tcgacctcgc cctgaggttc
      841 ggcatcgtaa ggcaggcagg gctgcgactg gcgcaggtcg atcagcgggc cttcgccttc
      901 ctcgtcttcg tcccagggca gcaggcgagc cagttcggcc agcggcgtga gcgcgccgaa
      961 cagcagctcg cattcgccct cggccaaatg aaacgggttg ctcagggcga gcatcagcgt
     1021 ctgttggtac aggccgcgca gggagctggc cggggccggc tgaaacgagg cggcgacatg
     1081 ctcgtcgagg cagccctggt gctcgccgat ccagtacagc aggtgactgt cgctccagag
     1141 cgaggcgggc ggctcctgat acagctgata gtggcgcatc aggctctggg ccaggaaatg
     1201 ctcggccatg tacaggcacc aggccaggtg cgggcgcgat ggctgacgac cctgcagaat
     1261 ctgcagcagc aggcgcttga agcctgcggc cagttcttca cacagctgca cgaacaggtt
     1321 cgaaggcgcc gtgccgctgc gccgcgcggt gcagtagtgg cggtattcct cgcagaagct
     1381 ttgcagggcg cgctgccttt ccagtaaggt catggcgctg cggttgaggc ggaacagcag
     1441 gtccagcgcc tgtgataggc cgtcatcacc cggctggcga cgggcgtccg cgagcctggc
     1501 gttgagatcg gccagcggcg tggcatcctc ttcgaggatg tccggcactt cgaggcgcag
     1561 ggcatccagc gtcatatcaa ccctgcgggt acgaggagcg attgcatggg aagaccactc
     1621 cggatggtga tggggctctg cgccggtctt ctgctggccg gctgcgccga cgactggggc
     1681 gtcgatcagc atggacgaaa ggtaacggct gaacagctgg aaggccagtg gttggtgatc
     1741 aattactggg ccgagtggtg caagccgtgc cgcaccgaga ttccccagct caaccggctg
     1801 gaggcggagt tgcagggcaa gggcgcgcgg gtgatcgggg tgaatttcga tgccctgcgg
     1861 ggcgagaagc tcggcaaggc cgcgggcgcc ttcgacatcc gcttcaccgt gctggcgcag
     1921 gacccggctc cgcgcctgga gctgccgcgc aacgacgtgt tgccggtgac ctacatcatc
     1981 gacgccaatg gcaggctgcg cgagcgcctc gtcggcgagc agaccgccgc cggcctgcag
     2041 gcacgactgg cccattggca ggccgaggag taacgcagat gcagatctgt ttgcacgggt
     2101 tcgtcagtgg caaggttcag ggtgtgagct ttcgccagca cacactggaa gaggcggagc
     2161 gcctcgattt gaacggctgg gtgcgcaacc tcgccgatgg ccgcgtcgag gtgc
//
LOCUS       DATIHC010000184         2007 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28538, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000184 DATIHC010000000
VERSION     DATIHC010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2007
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28538"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..411
                     /locus_tag="VLF16_02930"
     CDS             <1..411
                     /locus_tag="VLF16_02930"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012270333.1"
                     /note="catalyzes the formation of agmatine from arginine
                     in putrescine and spermidine biosynthesis; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine decarboxylase"
                     /protein_id="HSX69862.1"
                     /translation="VLQDLTCDSDGKIRQYVDEQSIETSLPVHEVRDGEDYVLGVFLV
                     GAYQEILGDMHNLFGDTDSVNIYQRPDGSVYHTGIETHDTIEDMLRYVHLSPEELMTY
                     YRDKVAGAKLSANERAQYLDALRLGLTRSSYLST"
     gene            complement(593..1048)
                     /locus_tag="VLF16_02935"
     CDS             complement(593..1048)
                     /locus_tag="VLF16_02935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008367359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2214 family protein"
                     /protein_id="HSX69863.1"
                     /translation="MADAIAASLHYLSIFVLFALLTCEHILFRADLDHATARRLMRID
                     MAYGAAAGLVLFTGAARMIWFGKGWAYYLHNWVFHAKVSLFILVGLLSIVPTMTFFNW
                     RNDLLAGKAPTITPTQARRTLMVIRLELLLLVCLPFLASLMARGVGVFN"
     gene            complement(1059..>2007)
                     /locus_tag="VLF16_02940"
     CDS             complement(1059..>2007)
                     /locus_tag="VLF16_02940"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014860887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="HSX69864.1"
                     /translation="LYLDTLVRLTRELFEVETVLISLVDRDRQWFKARIGLEVAETPR
                     DISFCGHAVAARSPLVVEDAQQDPRFADNPVVTGPPFIRFYAGQPLFSDDQAIGTLCM
                     LHPEPRGLSQQERFRLRDLATLVEGYLQLRRMTGETRKLRQTVDREQRKALIDPLTQL
                     WNRTALLRFFPRELAAASDAGLSLGVLYGELERFRSVKENGSPAGADQALWECSRRLS
                     AALRPDDLLVRLGGEEFVALVAVHDSGEVRQIAERMRKAIADEPVTAAGQRLSLGLSI
                     GSALVQPGETQTQVLERAARALYRAKQGTDGTAHNDDAF"
BASE COUNT          321 a          688 c          705 g          293 t
ORIGIN      
        1 gtgctgcagg acctgacctg tgactccgac ggcaagatcc gccagtacgt cgacgagcag
       61 tcgatcgaga ccagcctgcc ggtgcacgag gtgcgcgacg gcgaggacta cgtgctcggc
      121 gtgttcctgg tcggcgcgta ccaggagatc ctcggcgaca tgcacaacct gttcggcgac
      181 accgactcgg tgaacatcta ccagcgcccg gacggcagcg tgtaccacac cggtatcgag
      241 acccacgaca ccatcgagga catgctgcgc tacgtgcacc tgtcgcccga ggagctgatg
      301 acctactacc gcgacaaggt ggccggcgcc aagctctcgg ccaacgagcg cgcccagtac
      361 ctggacgccc tgcgcctggg cctgacccgt tcctcgtacc tgtcgacctg agtcggggcc
      421 gcctggtgcg cacggcgcac cctacggccg gccctgctct gttgggggcg ctggccgttg
      481 tcgtagggtg cgcggcgcgc acccaaaggc agtaggcgcc tcggtgcgca cggcgcaccc
      541 tacaaagcgg aaaaaagccc ggccaatgcc gggctttttc atggccgttc gatcagttga
      601 acacgcccac gccccgcgcc atcaggctgg ccaggaacgg caggcagacc agcaacagca
      661 gctccaggcg gatcaccatg agcgtgcgcc tggcctgggt gggcgtgatg gtcggggcct
      721 tgccggccag caggtcgttg cgccagttga agaaggtcat ggtcggcacg atcgacagca
      781 ggccgaccag gatgaacagg ctgaccttgg cgtggaacac ccagttgtgc aggtagtacg
      841 cccagccctt gccgaaccag atcatccgcg ccgcgccggt gaacagcacc aggccggcgg
      901 cggcgccgta ggccatgtcg atgcgcatca ggcggcgcgc cgtggcgtgg tccagatcgg
      961 cgcggaacag gatgtgctcg caggtgagca gggcgaacag cacgaatatc gacaggtagt
     1021 gcaggctggc ggcgatggcg tcggccatgg cgatctcctc agaaggcgtc gtcgttgtgg
     1081 gccgttccgt ccgtgccctg cttggcacgg tacagggcgc gggcggcgcg ctccagcacc
     1141 tgggtctggg tctcgcccgg ctgcaccagg gcgctgccga tgctcaggcc cagcgacagg
     1201 cgctggccgg cggccgtgac cggctcgtcg gcgatggcct tgcgcatgcg ctcggcgatc
     1261 tgccgcacct cgcccgagtc gtgcaccgcc accagggcga cgaattcctc gccgcccagg
     1321 cgcaccagca ggtcgtccgg gcgcagcgcc gcgctcaggc gccgcgagca ctcccacagg
     1381 gcctggtcgg cgccggccgg gctgccgttt tccttgaccg agcgaaagcg ctccagctcg
     1441 ccgtacagca cgcccaggct cagcccggca tcgctggcgg cggccagttc gcgggggaag
     1501 aagcgcagca gcgcggtgcg attccacagc tgggtcagcg ggtcgatcag cgccttgcgc
     1561 tgttcccggt ccactgtctg gcgcagcttg cgggtctcgc cggtcatgcg gcgcagctgc
     1621 aggtagccct cgaccagggt ggcgaggtcg cgcaggcgaa agcgttcctg ctggctcagg
     1681 ccgcgcggct cgggatgcag catgcacagg gtgccgatcg cctggtcgtc gctgaacagc
     1741 ggctggccgg cgtagaagcg gatgaagggc gggccggtga ccaccgggtt gtcggcgaag
     1801 cgcgggtcct gctgggcgtc ctccaccacc agcgggctgc gcgccgccac ggcgtggccg
     1861 cagaaggaaa tgtcgcgcgg cgtctccgcc acctccaggc cgatgcgcgc cttgaaccac
     1921 tggcggtcgc ggtcgaccag gctgatcagc accgtctcca cctcgaacag ctcacgggtc
     1981 agccgcacca gggtgtccag gtacagc
//
LOCUS       DATIHC010000185         1893 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_40253, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000185 DATIHC010000000
VERSION     DATIHC010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1893)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1893)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1893
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40253"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..969
                     /locus_tag="VLF16_02945"
     CDS             <1..969
                     /locus_tag="VLF16_02945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011913036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase N-terminal-like
                     domain-containing protein"
                     /protein_id="HSX69865.1"
                     /translation="IKDSGLSLEDISNPRVGLIAGSGGASTLNQMEAIDTLREKGVKR
                     IGPYRVPRTMGSTVSACLATPFQIKGVNYSISSACATSAHCIGHAMEQIQMGKQDVVF
                     AGGGEEEHWSQSCLFDAMGALSTQYNETPEKASRAYDAKRDGFVIAGGGGMVVVEELE
                     HALKRGAKIYAEIVGYGATSDGYDMVAPSGEGAVRCMQQALATVSAPIDYLNTHGTST
                     PVGDTAEARAVREVFGAKAPAISSTKSLSGHSLGAAGVHEAIYCLLMMQGGFVAGSAN
                     IEEIDPEVADLPIQRETRDVQLNTVMSNSFGFGGTNATLVLQRYQA"
     gene            complement(1027..1494)
                     /locus_tag="VLF16_02950"
     CDS             complement(1027..1494)
                     /locus_tag="VLF16_02950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008071496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3859 domain-containing protein"
                     /protein_id="HSX69866.1"
                     /translation="MKHLFSLSVLALGLSTNLALADVRVDGPVEYGVFASAPIKNPQP
                     GERIFSRANQPMEQTEVVPARLGTKFGVRYRLLGKSESEKPLTLLYFTPGLVGPDGKR
                     QDKIELQQKLVVGAPVDVMAFEFTEHYEVVPGEWHFMVFQGDRKLLEQRFSVQ"
     gene            complement(1557..>1893)
                     /locus_tag="VLF16_02955"
     CDS             complement(1557..>1893)
                     /locus_tag="VLF16_02955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010483666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HSX69867.1"
                     /translation="HQEKLDFLLSTLERMLGDYPNLYIDLSWTVLQPYLLDAEGRPDP
                     RWVRLVSRYPERFMLGSDVVGRFEGLGDYLQAFRPFLDALPEDVAHKVARDNFLAVLP
                     RKRQAELRD"
BASE COUNT          352 a          645 c          597 g          299 t
ORIGIN      
        1 atcaaggact cgggcctgag cctggaggac atttccaacc cgcgcgtcgg cctgatcgcc
       61 ggctccggcg gtgcctccac cctgaaccag atggaagcca tcgacaccct gcgcgaaaag
      121 ggcgtcaagc gcatcggccc ataccgcgtg ccgcgtacca tgggcagtac cgtgtcggcc
      181 tgcctggcca cgccgttcca gatcaagggc gtgaactact ccatctcctc cgcctgcgcc
      241 accagcgctc actgcatcgg ccacgctatg gagcagatcc agatgggcaa gcaggacgtg
      301 gtgttcgccg gcggcggcga agaagagcac tggagccaga gctgcctgtt cgacgccatg
      361 ggcgccctct ccacccagta caacgaaacc ccggagaagg cctcccgcgc ctacgacgcc
      421 aagcgtgacg gcttcgtcat cgccggcggc ggcggcatgg tggtggtcga ggaactggag
      481 cacgcgctca agcgcggcgc caagatctac gccgagatcg tcggctacgg cgccaccagc
      541 gacggctatg acatggtcgc cccgagcggc gaaggcgccg tgcgctgcat gcagcaggcc
      601 ctggccaccg tcagcgcgcc gatcgactac ctcaacaccc acggcacctc caccccggtc
      661 ggcgatactg ccgaggcccg cgcggtgcgc gaagtgttcg gcgccaaggc tccggccatc
      721 agctccacca agagcctgtc cggccactcg ctgggcgccg ccggcgtgca cgaggcgatc
      781 tactgcctgc tgatgatgca gggcggcttc gttgccggtt cggccaacat cgaggaaatc
      841 gacccggaag tggcggacct cccgatccag cgcgagaccc gcgacgtgca gctgaacacc
      901 gtgatgagca acagcttcgg cttcggcggc accaacgcca ccctggtgct gcagcgctac
      961 caggcctgat cgcccgctcc atgaaaaacg gcgccttcgg gcgccgtttt tcgtttccgc
     1021 accgacttac tgcacagaga agcgctgctc cagcagcttg cggtcgccct ggaagaccat
     1081 gaaatgccat tcgcccggga ccacctcata gtgctcggtg aattcgaagg ccatcacgtc
     1141 cacgggcgca ccgaccacca gtttctgctg cagctcgatc ttgtcctgac gcttgccatc
     1201 ggggccgacc aggcctgggg tgaaatacag cagggtcagc ggcttctcgc tctcgctctt
     1261 gccgagcagg cggtagcgca cgccgaactt tgtgcccagg cgcgccggca ccacttcggt
     1321 ctgctccatc ggctgattgg cgcggctgaa gatgcgttca cccggctgcg gattcttgat
     1381 cggcgcactg gcaaacacac cgtattcgac aggaccgtcg acgcgcacgt cggccagggc
     1441 caggttggtg gacaggccca aggccaggac ggacaggctg aacaggtgct tcatctcgcg
     1501 ctccttgagg aaagttggcg cgaggctatg acgccgcggt tacaagctga tgacaatcag
     1561 tcgcgcagct cggcctggcg tttgcgcggc agcacggcga ggaagttgtc acgggccact
     1621 ttgtgcgcta cgtcctcggg cagcgcatcg aggaacgggc ggaaggcctg caggtagtcg
     1681 cccaaacctt cgaaacggcc gaccacgtct gagccgagca tgaagcgctc gggatagcgg
     1741 ctgaccaacc tcacccagcg cgggtcgggc cggccctcag catccagcag gtagggctgc
     1801 agtaccgtcc acgacaggtc gatgtacagg ttggggtagt cacccagcat ccgctccagc
     1861 gtcgagagca ggaaatccag cttctcctga tgg
//
LOCUS       DATIHC010000186         1788 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21219, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000186 DATIHC010000000
VERSION     DATIHC010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1788)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1788)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1788
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21219"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..780
                     /locus_tag="VLF16_02960"
     CDS             <1..780
                     /locus_tag="VLF16_02960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016494989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding domain-containing
                     protein"
                     /protein_id="HSX69868.1"
                     /translation="APGGTVELGIRRQPGGRLSNRILDHLAVGALVELGQAEGELHWP
                     AHAEGVGLLAAGSGITALLGLLREALARGYAAPVTLLHYVREAGQRAYGEELRQLMLR
                     HPNLQVRWLLTGEGAPADAHGGRFHPGHLLGMSGFALLACGPAGFVEAVRGSWGGALQ
                     GEAFSPPRRVSEPGQAVRLGFARSRLEAWGDSARSLLEQAEAHGLRPAHGCRQGICAS
                     CTCLLLGGAVRDLRNGETFAEPGQPIRLCISAPLGDVHIDL"
     gene            791..>1788
                     /locus_tag="VLF16_02965"
     CDS             791..>1788
                     /locus_tag="VLF16_02965"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003116117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016717 - oxidoreductase activity, acting
                     on paired donors, with oxidation of a pair of donors
                     resulting in the reduction of molecular oxygen to two
                     molecules of water [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA desaturase"
                     /protein_id="HSX69869.1"
                     /translation="MRLDRELNAVELQAFADELDALRRQTVADLGAADARYIRRVRGV
                     VRLCCWSGRALLMLGWFPPTWLLGSLLLGLGKILENMELGHNVMHGQYDWMNDPELSG
                     RRYEWDIVGPADFWRHTHNHMHHTWTNVIGMDDDVGYGLVRLFPEQRWKPFYRWQPLW
                     VTLQALLFQYAVAIQHLRLDKWYKGKISGAEVRPLARQFGFKLLRQWLKDYALFPLLA
                     LLLGANALAVLAGNALANLLRNLWTFLVIFCGHFTERAAVFAKESVAGESRGHWYLRQ
                     LRGSSNLEGGRLFHILTGNLSHQIEHHLFPDLPARRYAELAPRVREIAARYGQVYN"
BASE COUNT          247 a          624 c          637 g          280 t
ORIGIN      
        1 gcgcccggcg gcaccgtcga gctgggcatc cgccgtcagc cgggcgggcg tctgtccaat
       61 cgcatcctcg atcacctggc ggtgggagcg ttagtcgagc tgggccaggc cgagggcgaa
      121 ctgcactggc cggcgcacgc cgagggcgtc ggcctgctgg ccgccggcag cggcatcacc
      181 gcgctgctcg gcctgctgcg cgaggcgctg gcccgtggct acgcggcgcc agtgacgctg
      241 ctgcactacg tgcgcgaggc ggggcagcgc gcctatggcg aggaactgcg gcagctgatg
      301 ctgcgccatc cgaacctgca ggtgcgctgg ctgctgaccg gcgagggcgc acctgcggat
      361 gcccatggcg ggcgcttcca ccccggccac ctgctcggca tgagcggctt cgcgctgctg
      421 gcctgcggtc cggccggctt cgtcgaggcg gtaaggggca gctggggcgg cgcgttgcag
      481 ggcgaggcgt tcagtccgcc gcggcgggta agcgaacccg gccaggcggt gcgcctcggc
      541 ttcgcccgca gtcgcctgga ggcctggggc gacagcgcgc gcagcctgct ggagcaggcc
      601 gaggcgcatg gcctgcgccc ggcccacggc tgtcgccagg gcatctgcgc cagctgcacc
      661 tgcctgctgc tcggcggcgc ggtgcgcgat ctgcgcaacg gcgaaacctt cgccgaaccc
      721 ggccagccga tccgcctgtg catcagcgcg ccgctcggcg acgtccacat cgatctctga
      781 ggaaaccgtc atgcgcctgg accgtgaact gaatgccgtc gagctgcagg ccttcgccga
      841 cgagctggac gcactgcgcc ggcagaccgt ggccgacctg ggcgcggccg acgcccgtta
      901 catccgtcgc gtgcgcggcg tcgtgcgcct gtgctgctgg agcggtcgcg cgctgctgat
      961 gctcggctgg ttcccgccca cctggttgct cggcagcctg ttgctggggc tcggcaagat
     1021 cctcgagaac atggagctgg gccacaacgt gatgcacggc cagtacgact ggatgaacga
     1081 tcccgagcta tccgggcgcc gctacgaatg ggatatcgtc ggcccggccg acttctggcg
     1141 gcacacccac aaccacatgc accacacctg gaccaacgtg atcggcatgg atgacgacgt
     1201 cggctacggc ctggtgcgac tgttccccga gcagcgctgg aagcccttct accgctggca
     1261 gccgttgtgg gtgacgctgc aggcgctgct gttccagtat gccgtggcca tccagcacct
     1321 gcgtctggac aagtggtaca agggcaagat cagcggggcg gaggtgcgcc cgctggcgcg
     1381 ccagttcggc ttcaagctgc tgcgccagtg gctcaaggac tatgcgctgt tcccgctgtt
     1441 ggcgctgctg ctcggcgcca acgccctggc ggtgctggcc ggcaacgcgc tggccaatct
     1501 gctgcgcaac ctgtggacct tcctggtgat cttctgcggt catttcaccg agcgcgcggc
     1561 ggtgttcgcc aaggagtcgg tggcgggcga gagccgcggg cactggtacc tgcgccagct
     1621 gcgcggctcc agcaacctgg agggcggccg gctgttccac atcctcaccg gcaacctcag
     1681 ccatcagatc gagcaccacc tgttccccga cctgccggcc cgtcgctacg ccgagctggc
     1741 accgagggtg cgcgagatcg ccgcgcgcta tggccaggtc tacaacag
//
LOCUS       DATIHC010000187         4286 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35659, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000187 DATIHC010000000
VERSION     DATIHC010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4286
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35659"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(164..1651)
                     /locus_tag="VLF16_02970"
     CDS             complement(164..1651)
                     /locus_tag="VLF16_02970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003201968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HSX69870.1"
                     /translation="MKQQSGVSYTTVDQTYFEKRGLRRYAGVWSLWALGVGAVISGHF
                     SGWNFGLANGWGSMLIAAIIIAIMYLGLTFSLAEMSPALPHTGGAYSFARSAMGPWGG
                     FLTGLAENVEYVLTPAVIVFFIGSYMGSIFGTPSEYQPLWWIGFYVVFIWLNVIGVEL
                     SFKVTLVVTLLALSCLVVFWISAIPHIDFNRFAMNVGPGGVELPEGNGPFLPNGLFGV
                     LAAMPFAVWLFLAIEQLPLAAEESVDPKRDMPKGIILGMFTLILSAFMILWLNPAVTG
                     VGAHALGSSGEPLLDGFKAIYGDDIAKLLALVAVLGLIASFHTIIFAMGRQIYSLSRA
                     GYFLPQLSITHGQRKTPYVAMLIGSLMALAVMMTLWFLFGEEKGGAVIGGTLLNMAVF
                     GAMFSYFMQALSFILLRRKMPDIERPYRSPLGVPGAMLTMLIAAVTLYFQLTGDPAYT
                     LGVFWVAVWFGIGITYFAIVGRHRLILSPEEEFAMERREQNKTHS"
     gene            2014..3366
                     /gene="mpl"
                     /locus_tag="VLF16_02975"
     CDS             2014..3366
                     /gene="mpl"
                     /locus_tag="VLF16_02975"
                     /EC_number="6.3.2.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HSX69871.1"
                     /translation="MHIHILGICGTFMGSLAVLAKELGHRVTGSDASVYPPMSTQLEA
                     QGIELMQGYLPEHLQPAPDLVVIGNALSRGNPAVEYVLNQGLPYVSGPQWLADHVLQG
                     RWVLGVAGTHGKTTTTSMLAWVLEHAGMSPGFLIGGVPQNFGVSARLGGTPFFVVEAD
                     EYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIERQFHHLVRTVPGEGLII
                     HPQAEGALARVVEMGCWTPVQTTGAGGQWQARLLSEDGSRFEVVFDGKVEGTVEWELT
                     GQHNVANALATLAAARHVGVVPELGIAGLSSFKSVKRRMEKVAEVKGVTLYDDFAHHP
                     TAIATTLDGLRKRVGDAPVIAVIEPRSNSMKLGAHRDGLPDSVVQADRVFWYAPANLG
                     WDLAATVAGSSVPTQVCDSLEAIIDGVKAHAVPGAQVVIMSNGGFGGLHGKLAAALGS
                     "
     gene            3541..4170
                     /gene="ubiX"
                     /locus_tag="VLF16_02980"
     CDS             3541..4170
                     /gene="ubiX"
                     /locus_tag="VLF16_02980"
                     /EC_number="2.5.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin prenyltransferase UbiX"
                     /protein_id="HSX69872.1"
                     /translation="MNGPERITLAMTGASGAQYGLRLLDCLVQEDREVHFLISKAAQL
                     VMATETDVTLPAKPQAMQQFLSEYTGAASGQIRVYGKEDWMAPPASGSGAPSAMVVVP
                     CSTGTLSAIATGACNNLIERAADVVLKERRQLILVPREAPYSSIHLENMLKLSNLGVT
                     ILPASPGFYHQPQTLDDLVDFVVARILNCLGIPQDMLPRWGEHHLSSDD"
BASE COUNT          736 a         1414 c         1462 g          674 t
ORIGIN      
        1 gcgcttgccg atcaggcggc cctgcatgtc gaccatgcag gccaggacgg tgtcgatctt
       61 gccggccacg gcgagttcgc gcaggccggc cagggtgagg tgggcagtca tccgttggtc
      121 tccgcaaagg gtcggccgca cccgcgggcg cggccggggc tcatcagctg tgggtcttgt
      181 tctgttcgcg ccgctccatg gcgaattcct cttctggcga gaggatcagg cgatgacggc
      241 cgacgatggc gaagtaggtg atgccgatgc cgaaccacac cgccacccag aacacgccga
      301 gggtgtaggc cgggtcgccg gtgagctgga agtacagggt cacggcggcg atcagcatgg
      361 tcagcatcgc gcccggcaca cccagcgggc tgcggtaggg gcgctcgata tcgggcatct
      421 tgcgccgcag caaaatgaac gacagggcct gcatgaagta ggagaacatg gcgccgaaca
      481 ccgccatgtt gagcagggtg ccgccgatca ccgcgccgcc cttttcctca ccgaagagga
      541 accacagggt catcatcacc gccagcgcca tcaggctgcc gatcagcatg gccacgtagg
      601 gcgtcttgcg ctggccgtgg gtgatcgaca gttgcggcag gaagtagccg gcgcggctca
      661 gcgagtagat ctgccggccc atggcgaaga tgatggtgtg gaagctggcg atcaggccga
      721 gcaccgccac cagcgccagc agcttggcga tgtcgtcacc gtagatggcc ttgaagccat
      781 ccagcaatgg ctcgccggaa gagcccaggg cgtgggcgcc gacaccggtc actgccgggt
      841 tcagccagag gatcataaag gccgaaagga tcagggtgaa catgccgagg atgatgccct
      901 tgggcatgtc gcgtttcggg tcgaccgact cttccgccgc cagcggcagc tgctcgatgg
      961 cgaggaacag ccacaccgcg aaaggcatcg ccgccagcac gccgaacagg ccgttgggca
     1021 ggaacgggcc gttgccttcc ggtaactcga cgccgcccgg gccgacgttc atggcgaagc
     1081 gattgaagtc gatgtgcggg atggcgctga tccagaacac caccaggcac gacagggcca
     1141 gcagggtgac caccagggtg accttgaacg acagctccac gccgatcacg ttgagccaga
     1201 tgaacaccac gtagaagccg atccaccaca gcggctggta ctcgctgggc gtgccgaaga
     1261 tgctgcccat gtagctgccg atgaagaaca cgatcaccgc aggggtgagc acgtactcga
     1321 cattctccgc caggccggtg aggaagccgc cccaggggcc catggcgctg cgcgcgaagg
     1381 aataggcgcc gccggtgtgg ggcagggccg gcgacatctc cgccagggag aaggtcaggc
     1441 ccaggtacat gatggcgatg atgatggcgg cgatcagcat gctgccccag ccgttggcca
     1501 ggccgaagtt ccagccggag aagtggccgg agatcaccgc gccgacgccc agcgcccaca
     1561 gcgaccagac gccggcatag cggcgcaggc cgcgtttctc gaagtaggtc tgatcgaccg
     1621 tcgtgtagct gactcccgat tgctgcttca tggtcctctc ctgcatttcg cgttggctcg
     1681 ggttcttgta ggaattgcgg ccttgcttga aacgggatgg agcacagcgg ctgacagcgg
     1741 gaggatgcgg aggacggggc cgatggtgat gcggcggttg acttcccccg ggggccggaa
     1801 acatttccgg cgagcatggt gcgcagacga acatccggtc gctgacagct tgcgggcatg
     1861 gacgacgagg aacctcatgc cgcctcggtg ttccgagact cctgacactc tagtcgagaa
     1921 aacgcggggc ggtacggcag cctgtccggt gccgccctgt gctaccctgc ggccagttct
     1981 gccggggctt cccggcgctt ttcgaggtca tcgatgcaca tccatattct cggcatctgc
     2041 ggcaccttca tgggctctct ggcggtactg gccaaggagc tggggcaccg cgtcaccggc
     2101 tccgacgcca gcgtctaccc gcccatgagc acccagctgg aggcccaggg catcgagctg
     2161 atgcagggct acctgcccga gcacctgcag ccggcccccg acctggtggt gatcggcaac
     2221 gccctgagcc gcggcaaccc ggcggtggag tacgtgctca accagggcct gccctacgtc
     2281 tccggcccgc agtggctggc cgaccatgtg ctgcaggggc gctgggtact gggcgtggcc
     2341 ggcacccacg gcaagaccac caccaccagc atgctggcct gggtgctgga acatgccggc
     2401 atgagccctg gctttctgat cggcggcgtg ccgcagaact tcggtgtgtc cgcgcgcctg
     2461 ggcggcacgc cgttcttcgt ggtcgaggcc gacgagtacg acagcgcctt cttcgacaag
     2521 cgcagcaagt tcgtccacta ccgcccgcgc acggcgatcc tcaacaacct cgagttcgac
     2581 cacgccgata tcttcccgga cctggccgcc atcgagcggc agttccacca cctggtgcgc
     2641 accgtgccgg gcgaggggct gatcatccat ccgcaggccg aaggggcgct ggcgcgggtg
     2701 gtcgagatgg gctgctggac cccggtgcag accaccggcg ccggcggcca gtggcaggcg
     2761 cgcctgctta gcgaggacgg ctcgcgcttc gaggtggtgt tcgacggtaa ggttgagggc
     2821 acggtggagt gggagctgac cggccagcac aacgtggcca atgccctggc gacgctggcc
     2881 gccgcgcggc atgtcggcgt ggtgccggag ctgggcatcg ccggcctgtc gtccttcaag
     2941 agcgtcaagc ggcgcatgga gaaggtcgcg gaagtgaagg gcgtgaccct ctacgacgac
     3001 ttcgcccacc acccgaccgc catcgccacc accctcgacg gcctgcgcaa gcgcgtcggc
     3061 gatgcgccgg tgatcgcggt gatcgagccg cgctccaact ccatgaagct cggcgcccac
     3121 cgtgacggcc tgccggattc cgtggtgcag gccgaccggg tgttctggta cgcgccggcc
     3181 aacctgggct gggacctggc ggccaccgtc gccggctcca gcgtgccgac ccaggtctgc
     3241 gactcgctgg aggccatcat cgacggcgtg aaggcccatg cggtgccggg cgcccaggtg
     3301 gtgatcatga gcaacggcgg cttcggcggc ctgcacggca agctggcggc ggcactaggc
     3361 agctgatgcc tgtagcccgg atgcaatccg ggaaagcccc ccggattgca tccgggctac
     3421 gggttggctg aggcttgagg taattcgtag ggtggatagc cgagtcagcg ttatccacca
     3481 gactttctgg tggaaaagcc gccggcggcg tttcccgccc tacgcataag tggagactct
     3541 atgaacgggc ccgaacgcat caccctggcc atgaccggcg cctccggcgc gcagtacggc
     3601 ctgcgcctgc tcgactgcct ggtgcaggaa gaccgcgagg tgcacttcct gatctccaag
     3661 gccgcgcagc tggtgatggc caccgagacc gacgtcacgc tgccggccaa accccaggcc
     3721 atgcagcagt tcctcagcga gtacaccggt gcagcctccg ggcagatccg cgtgtacggc
     3781 aaggaagact ggatggcgcc gccggcctcc ggctccggcg cgccgagcgc catggtggtg
     3841 gtgccgtgca gcaccggcac cctgtcggcc atcgctaccg gcgcctgcaa caacctgatc
     3901 gagcgcgccg ccgacgtggt gctcaaggag cgtcgccagt tgatcctggt gccgcgcgag
     3961 gcaccgtact ccagcatcca cctggagaac atgctcaagc tgtccaacct cggcgtgacc
     4021 atcctgccgg cctcgcccgg cttctatcac cagccgcaga ccctggacga cctggtcgac
     4081 ttcgtggtcg cgcgcatcct caactgcttg ggcataccgc aggacatgct gccgcgctgg
     4141 ggcgaacacc atctctccag cgatgattga ttgcctggct cgcgaggtcg gcgtgcgcgc
     4201 atggcgcgcg gcgcgttcct gcatcgtcgg cctggccctg ctgctggcgc tgcccggttg
     4261 cgccagcgta cgcaccctcg acgccg
//
LOCUS       DATIHC010000188         1574 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21220, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000188 DATIHC010000000
VERSION     DATIHC010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1574
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21220"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..758)
                     /locus_tag="VLF16_02985"
     CDS             complement(<1..758)
                     /locus_tag="VLF16_02985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020193755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSX69873.1"
                     /translation="MSHDPANNSRRRFLAATSLLGAAGALWPSLPIFGADKGGSMHPD
                     LILYNGRIHTVDREKPKASAVAIHDGRFVAVGDDAEVMALRGGNTRVVDLQKRTVIPG
                     LNDSHLHLIRGGLNYNLELRWEGVPSLADALRMLKDQAERTPAPQWVRVVGGWNEFQF
                     AEKRLPTLDEINRAAPDTPVFLLHLYDRALLNRAALRVVGYDKNTPNPPGGEIVRDAN
                     GEPTGMLIARPNAMILYATLAKGPKLPLEYQVNST"
     gene            complement(772..1335)
                     /locus_tag="VLF16_02990"
     CDS             complement(772..1335)
                     /locus_tag="VLF16_02990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008374632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HSX69874.1"
                     /translation="MEMQHADNVVTLLIRHRVRQGREQAYEHWLHRIVQTAHGYPGHL
                     GVDVIRGTDDGLPLFTSVLRFNGAPQLQDWLDSDERRRLVEEVRPLLERQEDLELHPG
                     REFWFAPADAEVPPPRWKQACVTFAVILPLSLLIPLLWQPAFAALPWLGGYLASNTAI
                     TLTIVLLVVYLFMPRVTRWLAPWLNRP"
BASE COUNT          227 a          470 c          616 g          261 t
ORIGIN      
        1 gtggagttga cctggtactc cagcggcagc ttcggcccct tggccagggt ggcgtagagg
       61 atcatcgcgt tgggccgggc gatgagcatg ccggtgggct cgccgttggc gtcgcggacg
      121 atctcgccgc ccggcgggtt gggggtgttc ttgtcgtaac cgaccacgcg cagcgcggcg
      181 cggttgagca gggcgcggtc gtacaggtgc agcaggaaca ccggggtgtc cggcgcggcc
      241 ctgttgatct cgtccagggt cggcaggcgc ttctcggcga actggaattc gttccagccg
      301 ccgaccaccc gcacccattg cggggccggg gtgcgctcgg cctggtcctt gagcatgcgc
      361 agggcgtcgg ccagcgaggg cacgccttcc cagcgcagct ccaggttgta gttgaggccg
      421 ccgcggatca ggtgcaggtg cgagtcgttg aggccgggga tcacggtgcg cttctgcagg
      481 tcgacgaccc gcgtgttgcc gccgcgcagg gccatcacct cggcatcgtc accgacggcg
      541 acgaagcggc cgtcgtggat ggccacggcg ctggccttgg gtttctcccg gtccacggta
      601 tggatgcggc cgttgtacag gatcaggtcg ggatgcatgg agcctccttt gtcggcgccg
      661 aagatcggca gggacggcca cagcgcgccg gcggcgccga gcagggatgt ggcggcgaga
      721 aagcggcgcc ggctgttgtt ggcgggatcg tgggacatgg ggacctccgg gtcagggtcg
      781 gttgagccag ggggcgagcc agcgggtgac ccgtggcatg aacagataga ccaccagcag
      841 gacgatggtc agggtgatcg cggtgttgct ggccaggtag ccgccgagcc agggcagggc
      901 ggcgaacgcc ggctgccaga gcagcgggat cagcaggctg agcggcagga tcacggcgaa
      961 ggtaacgcag gcctgcttcc agcgtggcgg tggaacctcg gcatcggccg gggcgaacca
     1021 gaattcgcgg ccggggtgca gttcgaggtc ttcctggcgc tcgagcagcg ggcggacttc
     1081 ctcgaccagc cggcgacgct cgtccgaatc cagccagtct tgcagttgcg gggcgccgtt
     1141 gaagcgcagc acgctggtga acagcggcaa cccgtcgtcg gtgccgcgaa tcacgtcgac
     1201 gcccaggtgg ccgggatagc cgtgtgcggt ctggacgatg cggtgcagcc agtgctcgta
     1261 ggcctgctcc cggccctggc gaacccggtg gcggatcagc agggtgacca cgttgtcggc
     1321 gtgttgcatt tccatcgtca ggagcctctg gcctgatgct tcgggagccg ccagtgtcgc
     1381 gccagacgag ggcgatcgat tgcatcggtg tgccggcttt gttccgatgt gatcaaagcc
     1441 gaacgctagg ggccggccag gcggtcgcgc aatgggtgtt gatgtggcca ggccgggatg
     1501 ccggcgccag gcgactttcg gctctcgatg gcgcgaggtg ggcgggccct gcgctcggtt
     1561 gtcgagcgaa ggcc
//
LOCUS       DATIHC010000189         3662 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12129, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000189 DATIHC010000000
VERSION     DATIHC010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3662
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12129"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..316
                     /locus_tag="VLF16_02995"
     CDS             <1..316
                     /locus_tag="VLF16_02995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013789795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RibD family protein"
                     /protein_id="HSX69875.1"
                     /translation="EERHELLAVPGSNGHVDLRKLLLELAARGANEVLVEAGPKLAGA
                     FARAGLVDEYQLFVAPKFLGSSARPLLDWPLARMAEAQELEIRDIRAVGSDWRITAVP
                     KP"
     regulatory      426..570
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            691..1353
                     /locus_tag="VLF16_03000"
     CDS             691..1353
                     /locus_tag="VLF16_03000"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019340066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HSX69876.1"
                     /translation="MFTGIIESIGTIRAITPKGGDVRVYVETGKLDLGDVKLGDSIAV
                     NGVCLTAVELPGDGFWADVSRETLTRTAFVDLKAGSRVNLEKALTPTTRLGGHLVSGH
                     VDGVGEIVKREDNARAIQFTVRAPRELAKYIALKGSITVDGTSLTVNAVNGAEFELTI
                     VPHTLLETIMADYRPGRRVNLEVDLLARYLERLLLGDKAAEPSASGISEAFLAEHGYL
                     NK"
     gene            1364..2443
                     /gene="ribBA"
                     /locus_tag="VLF16_03005"
     CDS             1364..2443
                     /gene="ribBA"
                     /locus_tag="VLF16_03005"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA];
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HSX69877.1"
                     /translation="MALNTAEELIEDIRAGKMVILMDDEDRENEGDIIIASECVSAEH
                     INFMARFARGLICMPMTRERCELLKLPLMAPRNGSGFGTKFTVSIEAAEGVTTGISAA
                     DRARTVQAAVARSAVADDIVSPGHIFPLMAQPGGVLARAGHTEAACDLARMAGFEPSG
                     VICEIMNDDGTMARRPELEKFAAEHDLKIGTIADLIHYRLIHERTVERVSEQPLDTEL
                     GQFTLVTYRDGVENTAHMALTLGKVCAEEPTLVRVHNMEPLRDLFLVKQPGRWSLRAA
                     MAEVAKAGSGVVLLLGNPLTGPELLAHLGKQPAPSPATYSTVGAGSQILRDLGVRKMR
                     LMSSPMKFNAISGFDLEVVEYLPAE"
     gene            2580..3056
                     /gene="ribE"
                     /locus_tag="VLF16_03010"
     CDS             2580..3056
                     /gene="ribE"
                     /locus_tag="VLF16_03010"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HSX69878.1"
                     /translation="MTLKTIEGTFIAPQGKYALVVGRFNSFVVESLVSGAVDALVRHG
                     VKESDITVIRAPGAFEIPLVTQKVAQRGEFAAIIALGAVIRGGTPHFEYVAGECTKGL
                     AQVSMEYGVPVAFGVLTVDSIEQAIERSGTKAGNKGAEAALSALEMVSLLAALEAK"
     gene            3053..3538
                     /gene="nusB"
                     /locus_tag="VLF16_03015"
     CDS             3053..3538
                     /gene="nusB"
                     /locus_tag="VLF16_03015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003281759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HSX69879.1"
                     /translation="MSLNHDDSQDAPQPKAKGKIAQRRVARSLAMQALYQWHMAGQSL
                     NEIEAQFRVDNDFSGVDGAYFHEILTGVARSKPELDASFAPFLSIPLDELDPVELAIL
                     RLSAWELTSRVDVPYKVVINEGIELAKVFGATDGHKFVNGVLDKLAPVLRGPEVNANK
                     R"
BASE COUNT          644 a         1279 c         1194 g          545 t
ORIGIN      
        1 cgaggagcgc cacgagctgc tggcggtgcc cggcagcaat ggccatgtcg acctgcgcaa
       61 gctgctgctg gagctggccg cgcgcggcgc caacgaggtg ctggtggagg ccgggccgaa
      121 gctggccggg gccttcgctc gcgccgggct ggtcgacgag taccagctgt tcgtcgcgcc
      181 caagttcctc ggctccagcg cccgtccgct gctggactgg ccactggcgc gcatggccga
      241 ggcgcaggag ctggagatcc gcgacatccg cgccgtcggc agcgactggc ggatcaccgc
      301 cgtacccaag ccctagtcgg ggcagggcgc atcctgcgcc ggccgtacgg cagcggcgcg
      361 cgcggcgcac cctacgatcc gcggcacttt tgtggtaaaa agccagccgc ggccctcacc
      421 ggccgcaacg ttctcagggc ggggtgcgat tccccaccgg cggtaatgac agtcactgtc
      481 tagcccgcga gcgcctttcc agcgaaaggg acagcagacc cggtgcgatt ccggggccga
      541 cggtatagtc cggataaaga gagagcggga ttcccttccg gggcgccgtc cgtctgcgcc
      601 cgcgaaaatc cctatcgatc ggcattgccc tgtttttgac caaaacagga gatcatccat
      661 gctgcattgc accattcacc gggaggacgc atgttcaccg gcataatcga atccatcggc
      721 accatccgcg ccatcacgcc caagggcggc gacgtgcgcg tctacgtcga gaccggcaag
      781 ctggacctcg gcgacgtcaa gctgggcgac agcatcgcgg tcaacggcgt gtgcctgacc
      841 gcggtcgagc tgcctggcga cggcttctgg gccgacgtca gccgcgagac cctgacccgc
      901 accgccttcg tcgacctcaa ggctggcagc cgcgtcaatc tggagaaggc cctgacgccg
      961 accacccgcc tcggcgggca tctggtcagc ggccacgtcg acggcgtcgg cgagatcgtc
     1021 aagcgcgagg ataacgcccg cgccatccag ttcaccgtgc gcgcgccgcg cgagctggcc
     1081 aagtacatcg cgctcaaggg ctcgatcacc gtcgacggca ccagcctgac ggtcaacgcc
     1141 gtcaacggcg ccgagttcga actgaccatc gtgccgcata ccctgctcga aacgatcatg
     1201 gccgactacc gtccggggcg ccgggtcaac ctcgaagtgg acctgctggc gcgctacctg
     1261 gagcgcctgc tgctcggtga caaggccgcc gaacccagcg cttccggcat cagcgaagcc
     1321 ttcctcgccg aacacggcta cctgaacaag tgagattgcc cgcatggccc tgaataccgc
     1381 agaagaactg atcgaagaca tccgcgccgg caagatggtc atcctcatgg atgacgagga
     1441 ccgcgagaac gaaggcgaca tcatcatcgc ctccgaatgc gtgagcgccg agcacatcaa
     1501 tttcatggcc cgcttcgccc gcggcctgat ctgcatgccg atgacccgcg agcgctgcga
     1561 gctgctcaag ctgccgctga tggcgccgcg caacggttcc ggcttcggta ccaagttcac
     1621 cgtctccatc gaggcggccg aaggcgtcac caccggcatc tccgccgccg accgcgcgcg
     1681 caccgtgcag gccgcagtgg cacgcagcgc ggtggccgac gatatcgtca gccccggcca
     1741 catcttcccg ctgatggccc agcccggcgg cgtgctggcc cgcgccggcc acaccgaggc
     1801 ggcctgcgac ctggcgcgca tggccggctt cgagccgagc ggcgtgatct gcgagatcat
     1861 gaacgacgac ggcaccatgg cccgtcgccc ggaactggag aagttcgccg ccgagcacga
     1921 tttgaagatc ggcaccatcg ccgacctgat ccactaccgg ctgattcacg agcgcaccgt
     1981 cgagcgcgtc agcgagcagc cgctggacac cgagctgggc cagttcaccc tggtcaccta
     2041 ccgcgacggc gtggagaaca ccgcgcacat ggccctgacc ctgggcaagg tgtgcgcgga
     2101 agagccgacc ctggtgcgcg tgcacaatat ggagccgctg cgcgacctgt tcctggtcaa
     2161 gcagcccggc cgctggagcc tgcgtgcggc catggccgaa gtggccaagg ccggcagcgg
     2221 cgtggtgctg ctgctgggca atccgctcac cggcccggaa ctgctggccc acctgggcaa
     2281 gcagccggcg ccgagcccgg cgacctacag caccgtcggc gccggctcgc agattctccg
     2341 agatctgggc gtgcgcaaga tgcgcctgat gagctcgccg atgaagttca acgccatatc
     2401 cggcttcgat ctggaagttg tagaatacct gcccgccgaa taagcccagg gccagatgtg
     2461 ccgcgtgtcg agccgatatc gacacgccgc cgcgacgacc catggccccg agtgggctta
     2521 acttttcatc acggagtgcc acgggcactc cggctcttta tccgaaccga gactcgccca
     2581 tgaccctgaa gaccatcgaa ggtaccttca tcgccccgca aggcaaatac gccctggtgg
     2641 ttggccgctt caacagcttc gtcgtcgaga gcctggtcag cggcgccgtc gacgccctgg
     2701 tccgccacgg cgtgaaggaa agcgacatca ccgtcatccg cgcgccgggt gccttcgaga
     2761 ttccgctggt cacccagaaa gtcgcccagc gtggcgagtt cgccgccatc atcgccctcg
     2821 gcgcggtgat ccgtggcggt accccgcact tcgaatacgt cgccggcgag tgcaccaagg
     2881 gcctggccca ggtgtccatg gaatacggcg tgccggtcgc cttcggcgta ctgaccgtcg
     2941 actccatcga gcaggccatc gagcgctccg gcaccaaggc cggcaacaag ggcgccgagg
     3001 ccgcgctttc cgccctggaa atggtcagcc tgctggcggc cctggaggcc aagtgagcct
     3061 gaatcacgac gacagccagg acgctccgca gcccaaggcc aagggcaaga tcgcgcaacg
     3121 ccgcgtggcc cgcagcctgg ccatgcaggc gctgtatcag tggcacatgg ccggtcagtc
     3181 gctgaacgag atcgaagcgc agttccgcgt cgataacgac ttcagcggcg tcgacggcgc
     3241 ctacttccac gagatcctca ccggcgtggc tcgcagcaag ccggagctgg atgcgtcctt
     3301 cgcgcccttc ctgagcattc cgctggacga gctggacccg gtcgagctgg cgatcctgcg
     3361 cctgtccgcc tgggagctga ccagccgcgt cgatgtgccc tacaaggtgg tgatcaacga
     3421 gggcatcgag ctggccaagg tgttcggcgc caccgacggg cacaagttcg tcaatggcgt
     3481 gctggacaag ctggccccgg tgctgcgcgg gcccgaagtc aacgccaaca agcgctgagc
     3541 gaaaggcccg gagcgtgagc gagcggagtg aggggccagg cgccgggcgc gcggcaagcg
     3601 cggcctgccg tgtcggtcgg cgagtttgcg agcgccgcgc gatgctcttc gctcgcgccg
     3661 ct
//
LOCUS       DATIHC010000190         4220 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37679, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000190 DATIHC010000000
VERSION     DATIHC010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4220
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37679"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..155
                     /locus_tag="VLF16_03020"
     CDS             <1..155
                     /locus_tag="VLF16_03020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003281939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssE"
                     /protein_id="HSX69880.1"
                     /translation="LKQVRVISLPREHDPLSLNFAIEGLLQVDGIKRQVSFAAQLDGS
                     GQVKVR"
     gene            181..705
                     /locus_tag="VLF16_03025"
     CDS             181..705
                     /locus_tag="VLF16_03025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018927434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAAR domain-containing protein"
                     /protein_id="HSX69881.1"
                     /translation="MSGKPAARLGDPTACPIPGHGTNPIAAGSPNVLLDGLPAARQGD
                     ASACGGALSGNVIPTVLINGKPATTIGTVGNHGNVVMAGSGTVLIGASGGGASFVSPS
                     PVDIKGIFDEFFVLLDQDSGAPLSGIPYVLRSASGKEIHGITGTDGKTEKLSSSSAET
                     IELVIPKQSEVVIA"
     gene            725..1657
                     /locus_tag="VLF16_03030"
     CDS             725..1657
                     /locus_tag="VLF16_03030"
                     /inference="COORDINATES: protein motif:HMM:NF039427.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6402 family protein"
                     /protein_id="HSX69882.1"
                     /translation="MSDTALKSTLTPSSQNPQGTVSQIRLFRITDIPAAMEKIGWQIS
                     AKLMRHWFQGNPWSTPSGGMTEEVKSHAQMPPAQYREETIVTYQWLMGFPRVMAARDE
                     LRTAWNNPQATKLIRRNILREFGKHSVGCFPLSFNGKGSRAEAFGYANSRSVTFDTIG
                     DELNDLRGALANFNLRVTVEGTVNAFPDKVTFIAERIGFYAEDAYDFNDSGLLSQPLG
                     YWNFDGIAPSVTNSLGNDANIGYEKAKAVVTAPFTGEDIEQRFKDLERKRYFLITNSH
                     FVQYRSTQKKGGDFVVYSEIGYEAIAPVVFEFKK"
     gene            1654..2046
                     /locus_tag="VLF16_03035"
     CDS             1654..2046
                     /locus_tag="VLF16_03035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69883.1"
                     /translation="MSIWKASVALLVPTALILFGAVHTAINRDAQVSIKSPSGRFILE
                     NVSLAPWSELAYIRVIDTQAPESTFRTPLYDKHYTDMRSHEDDRTVGIVWFDFDKEQQ
                     SFEIGVPEWQDSWMNLFISNTPYRVTEN"
     gene            2051..2560
                     /locus_tag="VLF16_03040"
     CDS             2051..2560
                     /locus_tag="VLF16_03040"
                     /inference="COORDINATES: protein motif:HMM:NF042847.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HSX69884.1"
                     /translation="MIFKHHRQLELPRQGKLGVLLLLVALSTLDACVPYPHSVTRNPA
                     IEGRVLSAETGQPVAGAKIELDIGSDESWRYETRSDAEGRFAFAEHNDYRLFALLADA
                     PRCGTTLSISAHGYQTRHCIWMSMHWCSSRPIQLPPITLQPKHIAISQEDATDDLWRC
                     IESAKEQAH"
     gene            2560..>4220
                     /gene="tssF"
                     /locus_tag="VLF16_03045"
     CDS             2560..>4220
                     /gene="tssF"
                     /locus_tag="VLF16_03045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019650073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssF"
                     /protein_id="HSX69885.1"
                     /translation="MSFNHHYQSELSALRQLGKRFSERSPALAPFLGQAGRDPDVERL
                     LEGFAFLTGRLRQKLDDELPELTHSLMHLLWPNYMRPLPAFSMLQFAPLKRPGPALPV
                     PRHTPVEAKAVAGVTCRFRTAYATEVLPLALSGLDYSVKGDGALLSLRLAMSADGHLG
                     EIGLSTLRLHLAGERYIAQLLYLGLMRHLGGIQLVLLDDDGQPLTGEHGLPLPAIALP
                     ANQVEAVGFSEDQALIPYPHNTFRGYRHLQEYFAFQDKFLFVDLKGLDAIARQPAEVL
                     ERARGLELRFDIRKTGLQRIRPTLDNVRLYCTPVVNLFQHDAIPIRLDGKQDQYLLLP
                     AEFEPQHCGVFSVDRVTGWKPGGMGYEEYVPFESFEHDTSFDQPRARPHYSVRQQSSL
                     LGDGLETWLSFAQRGGDAQETLSIELTCTNQSLARQLKPGDICLPSEDTPEFLTFRNI
                     GAVTPSYAPPLHRDYLWKLISNMSLNYLSLADVEALKVILETYDLPRHYDQHALKVSQ
                     RMLGGLKKIAHQHVDRLHRGLPIRGVRTELTMDPDGYLGEGDLFL"
BASE COUNT          835 a         1414 c         1227 g          744 t
ORIGIN      
        1 gcctgaaaca ggtgcgggtc atttccctgc cgcgcgagca cgaccccctc agcctcaact
       61 tcgccatcga agggctgctg caggtcgacg gcatcaagcg ccaggtcagt tttgccgcgc
      121 agctggatgg cagcgggcaa gtgaaggtca ggtaagggcc tggttcaaag gagagcatgg
      181 atgtccggta aacccgccgc ccgcctgggc gaccccaccg cctgcccgat tcccggccac
      241 ggcaccaacc ccatcgccgc cggctcgccc aacgtgctgc tcgacggcct gccggccgcc
      301 cgccagggcg atgcctcggc ctgcggcggc gcactgtccg gcaacgtgat cccgaccgtg
      361 ctgatcaacg gcaagccggc gaccaccatc ggcaccgtgg gcaaccacgg caacgtggtg
      421 atggcggggt cggggacggt gttgattggg gccagtggag gcggggcttc gtttgtctcg
      481 cctagtcccg tggacatcaa agggattttc gatgagttct tcgtcttgct tgaccaagac
      541 tccggggccc cattgagcgg gattccgtac gttcttcgca gcgcatccgg caaggagatt
      601 catggcatca ccggtacgga tgggaagacc gaaaagctct cttcctcgag tgcagaaact
      661 attgagctgg ttatccccaa acagtccgaa gtagtgattg cctaactcgc aaggaaatct
      721 gcatatgtcc gataccgccc tgaaatcaac gcttacgcca agctcgcaga acccacaagg
      781 cacggtctcg cagatccgcc tgttcaggat cacggatata ccggcagcaa tggaaaaaat
      841 tggctggcag atttccgcga agctgatgcg tcactggttc caaggaaacc cctggagcac
      901 tcctagcggc ggcatgacgg aagaagtaaa gagccacgcc cagatgcctc ccgctcaata
      961 cagggaggag accatcgtca cgtaccaatg gctaatggga tttccgaggg tgatggcggc
     1021 ccgcgacgaa ttgcgaacgg cgtggaacaa ccctcaggca accaagctca tccgcagaaa
     1081 tatcctcaga gaattcggca agcactctgt cgggtgtttc ccgctgtcat tcaatggcaa
     1141 aggcagcaga gccgaggcgt ttggctatgc caacagccgc tccgtcacct tcgacaccat
     1201 tggcgacgag ctcaatgatc tacgcggtgc attagccaac ttcaatttac gagtcacagt
     1261 cgagggtacg gtcaacgctt tcccagacaa ggtgaccttc atcgccgagc gcatcggctt
     1321 ctatgccgaa gatgcgtatg acttcaacga cagcggcctg cttagtcagc cgctcggcta
     1381 ctggaacttc gatggtatcg cgccaagcgt gacgaatagt ctcggcaacg acgccaatat
     1441 cggctacgag aaggccaagg cagtcgtcac cgcccccttc actggcgaag acattgagca
     1501 gcgcttcaag gacctggagc gcaagcgcta tttcctgatc actaacagtc acttcgtgca
     1561 gtaccgctcg actcaaaaga agggcggaga cttcgtcgtt tactcagaga tcggctacga
     1621 agccatcgct cccgtcgtct tcgagtttaa gaaatgagca tctggaaagc ctccgtagcc
     1681 ttgctggtac cgactgcact cattctattc ggagcagtcc acacggccat caatcgtgat
     1741 gcacaggtct cgataaaaag cccatccggc agattcattc tggaaaacgt ctcgctcgcc
     1801 ccttggagcg aactcgccta catccgcgtc atcgacaccc aggcaccgga atccaccttc
     1861 cgcacgccgc tttacgacaa gcactacacg gacatgcgct cgcacgaaga tgacagaacc
     1921 gtgggcatcg tttggttcga cttcgacaag gagcagcagt ccttcgagat cggcgttccg
     1981 gaatggcaag acagttggat gaatctgttc atcagcaata ccccttaccg ggtcaccgag
     2041 aactgacgcc atgatcttca agcatcaccg tcagctcgaa ttgcccaggc aggggaagtt
     2101 aggcgtgctc cttttgcttg tggcgctatc gaccctcgat gcctgcgtcc cctaccccca
     2161 ctcggtgacc cgcaacccgg ccatcgaggg ccgcgtgctt tccgccgaaa cgggtcagcc
     2221 agtggcgggt gccaagatcg agctggatat cggcagcgac gagtcctggc gctacgaaac
     2281 ccgcagcgat gccgagggcc gtttcgcctt tgccgaacat aacgactatc gcctgttcgc
     2341 cctgctggcc gatgcgccgc gctgcggcac cacgctgtcg atcagcgccc acggctacca
     2401 aacgcgccat tgcatctgga tgagcatgca ttggtgctcg tcgaggccaa tccaactgcc
     2461 gcccatcacg ctgcagccga agcacatcgc aatctcgcaa gaagacgcca cagatgatct
     2521 ctggcgctgc atcgaatcgg ccaaggagca ggcccactaa tgtccttcaa ccaccactac
     2581 cagagcgaac tctccgcgct gcgccagctc ggcaagcgct tctccgagcg cagcccggcg
     2641 ctggcgccgt ttcttggcca ggctggccgt gatccggatg tggagcgtct gctggaaggc
     2701 ttcgcctttc ttaccgggcg cctgcggcag aagctcgacg acgaactgcc ggagctgacc
     2761 cattcgctga tgcacctgct gtggccgaac tatatgcgcc cgctgccggc cttcagcatg
     2821 ctgcagttcg ccccgctcaa gcgtcccggc ccggcactgc cggtgccgcg tcatacgccg
     2881 gtggaagcca aggccgtggc cggcgtgacc tgccgtttcc gcaccgccta cgcgaccgaa
     2941 gtgctgccgc tggccctgag cgggctggac tattcggtga agggcgacgg cgcgctgctc
     3001 agcctgcgcc tggccatgag cgccgacggc cacctcggcg agatcggcct gagcaccctg
     3061 cgcctgcatt tggccggcga gcgctacatc gcccagctgc tctacctcgg cctgatgcgc
     3121 cacctgggcg gcatccagct ggtactgctg gacgacgacg gtcagccgct gaccggcgag
     3181 catggcctgc cgctgccggc catcgctctg ccggccaacc aggtcgaggc agtcggcttc
     3241 agcgaagacc aggcgctgat cccctacccg cacaacacct tccgcggcta tcgccacctg
     3301 caggaatact tcgccttcca ggacaagttc ctcttcgtcg acctcaaggg cctcgacgcc
     3361 atcgcccgcc agccggccga ggtgctggag cgcgcccgcg gcctggagct gcgcttcgac
     3421 atccgcaaga ccggcctgca gcgcattcgc ccgaccctgg acaacgtgcg cctgtactgt
     3481 acgccggtgg taaacctgtt ccagcacgat gccatcccga tccgcctgga cggcaagcag
     3541 gaccagtacc tgctgctgcc ggccgagttc gaaccgcagc actgcggcgt gttctcggtg
     3601 gaccgggtga ccggctggaa gccgggcggc atgggctacg aggaatacgt gccgttcgag
     3661 tcgttcgagc acgacaccag cttcgaccag ccgcgcgccc gcccgcacta cagcgtgcgc
     3721 cagcagtcgt cgctgctcgg cgatggtctg gagacctggc tgagcttcgc ccagcgcggc
     3781 ggcgatgccc aggagaccct gtcgatcgag ctgacctgca ccaaccagag cctggcgcgc
     3841 cagctcaagc cgggcgacat ctgcctgccc agcgaggaca cgccggagtt cctcaccttc
     3901 cgcaacatcg gcgcggtgac gccgagctac gcgccgccgc tgcaccgcga ctacctgtgg
     3961 aagctgatct ccaacatgtc gctgaactac ctgtcgctgg ccgacgtcga ggcgctcaag
     4021 gtcatcctcg agacctacga cctgccgcgc cactacgacc agcatgcgct caaggtcagc
     4081 cagcgcatgc tcggcggcct gaagaagatc gcccaccagc acgtcgaccg cctgcaccgc
     4141 gggctgccga ttcgcggcgt gcgcaccgaa ttgaccatgg acccggacgg ctacctgggc
     4201 gaaggggacc tgttcctgtt
//
LOCUS       DATIHC010000191         2255 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19182, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000191 DATIHC010000000
VERSION     DATIHC010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2255)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2255)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2255
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19182"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1065
                     /gene="rlmD"
                     /locus_tag="VLF16_03050"
     CDS             <1..1065
                     /gene="rlmD"
                     /locus_tag="VLF16_03050"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003175384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HSX69886.1"
                     /translation="LQHLPHDEQLALKQRTLAEQLKRFAGLEPEMWAAPLTGPEFAYR
                     RRARIAVRWDAKARRLDVGFRAAASQDVVAIDQCPVLVQPLQPILQALPALLRGLDKP
                     QALGHVELFHGTRSAVLLRHMAPLGEADLQRLRAFCADHNAQLWLHGAGEPEADHAGA
                     DGAGEPLGYRLDAFGLELQYRPGDFVQVNGAVNQAMVEQALDWLAPQTGERVLDLFCG
                     LGNFALPLAQRVAEVVAVEGVEAMVERARANAEANGLDNLHFHQTDLSKPLAEAAWAA
                     RGFDAILLDPPRDGAFEVVKDMRRLGARRLVYVSCNPSTLARDSAELARQGYRLKRAG
                     ILDMFPQTAHVEAMALFEMG"
     gene            1147..>2255
                     /locus_tag="VLF16_03055"
     CDS             1147..>2255
                     /locus_tag="VLF16_03055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HSX69887.1"
                     /translation="MVQVRAHQPINLDGSIDLEAWLDHILSVDTALDREALKQACEFA
                     REVEQQANAAQNLWAEGTSSFQIGLEIAEILADLKLDQDSLVAAVIYRAVREGKTSLK
                     VVAEQFGAVVAKLIEGVLRMAAISNSVNPRESVVVGSQAQVKNLRKMLVAMVDDVRVA
                     LIKLAERTCAIRAVKHADDEKRHRVAREVFDIYAPLAHRLGIGHIKWELEDISFRYLE
                     PEQYKQIAKLLHERRLDREQYIADVMQQLREELTATGIKADISGRAKHIYSIWRKMQR
                     KGLQFSQIYDVRAVRVLVPEVRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLH
                     TAVIGPDGKVLEVQIRTNAMHEEAELGVCAHWKYKG"
BASE COUNT          399 a          735 c          787 g          334 t
ORIGIN      
        1 ctgcagcatc tgccccatga cgaacagctc gccctcaaac agcgcaccct ggccgagcaa
       61 ctgaagcgct tcgccggcct ggagccggag atgtgggccg ccccgctgac cggcccggaa
      121 ttcgcctacc gccgccgcgc gcgcatcgcc gtacgctggg atgccaaggc ccggcgcctg
      181 gacgtcggtt tccgcgctgc cgccagccag gacgtcgtcg ccatcgacca gtgcccggtg
      241 ctggtacagc ccttgcaacc gatcctgcag gcgttgccgg cgctgctgcg tggcctggac
      301 aagccccagg ccctcggcca tgtcgaactg ttccatggca cccgctcggc cgtactgctg
      361 cgccacatgg cgccgctggg cgaggccgac ctgcagcgcc tgcgcgcttt ctgtgccgat
      421 cacaatgcgc agctgtggct gcacggggcc ggcgagccgg aggccgatca tgccggcgcc
      481 gatggtgcgg gcgagccgct gggctatcgc ctggacgcct tcggcctgga gctgcagtac
      541 cgtcctggcg acttcgtcca ggtcaacggg gcggtcaatc aggccatggt cgaacaggcg
      601 ctagactggt tggcgccgca gactggcgag cgggtgctgg acctgttctg cggcctgggc
      661 aacttcgccc tgccgctggc gcagcgggtg gccgaggtag tggcggtgga aggcgtggag
      721 gccatggtcg aacgggcgcg ggcgaatgcc gaagccaacg gtctggacaa tctgcacttt
      781 caccagaccg acctgtcgaa gccgctggcc gaggcggcgt gggcagcccg gggtttcgac
      841 gctatcctgc tggacccgcc gcgcgacggc gcgttcgagg tggtgaagga catgcggcgg
      901 ttgggcgcgc ggcgcctggt ctacgtgtcc tgcaacccgt cgaccctggc gcgcgacagc
      961 gccgagctgg cgcgacaggg ctaccggctg aaacgggccg gcattctcga catgttcccg
     1021 cagacggcgc atgtggaggc gatggcgtta ttcgagatgg gctaggacgc ccatgcaatc
     1081 cgaccggtcc ggaagaaggc cggcgacagt tcggcgagtg aacggaacgc cgtagggaag
     1141 gtagcgatgg tacaggtgag agcgcaccag ccgatcaacc tcgatggcag catcgatctc
     1201 gaggcctggc tggaccatat tctgagcgtc gatacggcac tggaccgcga ggcgctgaag
     1261 caggcgtgcg agttcgcccg cgaggtggaa cagcaggcca acgcggcgca gaacctctgg
     1321 gccgagggca cctcgagctt ccagatcggg ctggagatcg ccgaaatcct cgccgacctc
     1381 aagctcgacc aggacagcct ggtggccgcg gtgatctacc gcgccgtgcg cgagggcaag
     1441 accagcctca aggtggtggc ggagcagttc ggcgcggtgg tggccaagct gatcgagggc
     1501 gtgctgcgca tggccgccat cagcaacagc gtcaacccgc gcgaatcggt ggtggtcggc
     1561 tcccaggccc aggtgaaaaa cctgcgcaag atgctggtgg ccatggtcga cgacgtgcgc
     1621 gtggccctga tcaagctggc cgagcgcacc tgtgcgatcc gtgcggtcaa gcatgccgac
     1681 gacgagaagc gccaccgcgt cgcccgcgag gtgttcgaca tctacgcgcc gctggcccat
     1741 cgcttaggaa taggccatat caagtgggag ctggaggaca tctccttccg ctacctggag
     1801 ccggagcagt acaagcagat cgccaagctg ctgcacgagc gccgcctgga ccgcgagcag
     1861 tacatcgccg acgtgatgca gcagctgcgt gaggaactga ccgccaccgg catcaaggcc
     1921 gacatcagcg gccgcgccaa gcacatctat tccatctggc ggaagatgca gcgcaagggc
     1981 ctgcagttca gccagatcta cgacgtgcgc gccgtacgcg tgctggtgcc ggaggtacgc
     2041 gactgctaca ccgcgctcgg catcgtgcac accctgtggc ggcatatccc caaggagttc
     2101 gacgactaca tcgccaaccc caaggagaac ggctaccgct cgctgcacac cgcggtgatc
     2161 ggcccggacg gcaaggtgct ggaggtgcag atccgcacca acgccatgca cgaggaggcc
     2221 gagctgggcg tgtgcgcgca ctggaagtac aaggg
//
LOCUS       DATIHC010000192         2204 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7492, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000192 DATIHC010000000
VERSION     DATIHC010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7492"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..303)
                     /locus_tag="VLF16_03060"
     CDS             complement(<1..303)
                     /locus_tag="VLF16_03060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69888.1"
                     /translation="MTPAPTPLESDIGNDALERRLQAQRLMQIANVLCVVLLCIGAQM
                     LVSRSWLNVGLIGASLVLVLIGRWLNRRGRVEASVMLVLCSLTAMVSASLWFSQGLY"
     gene            complement(434..1264)
                     /locus_tag="VLF16_03065"
     CDS             complement(434..1264)
                     /locus_tag="VLF16_03065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003449835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HSX69889.1"
                     /translation="MRTWLITGASRGFGALIAEQALNAGDAVIATARKPADVTARLGE
                     HRNLLAVRLDVTREDEAFEAVAAGIARFGRIDVLVNNAGFGVLGAVEETSAAETERLF
                     ATNVFGVLNVTRAVLPHMRRQRSGHVINISSLGGYQAYMGWGVYGSTKFAVEGISEAL
                     QQEVAPLGIHVTVVEPGFFRTDFLDEQSLVKTALELVDYDETVGAMRTFAAAANHAQP
                     GDPAKFAEAMLALANAEQPPLRLPLGSDALARIEQKHAQVEAELRAWRTLTLSTDFSA
                     "
     gene            1381..>2204
                     /locus_tag="VLF16_03070"
     CDS             1381..>2204
                     /locus_tag="VLF16_03070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016492584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX69890.1"
                     /translation="MKNVSPTDLAIFLAIAQHLSFARAAVDLGLTPSALSHALRGLEE
                     RLGVRLFNRTTRSVALTEAGERLQARVRPAFRDIADALEDLNNFRDKPSGSLRINAGR
                     AAIQLVLLPLVGRFLAAYPDVRLELVADDGLVDVVSAGFDAGVRFGERLEADMVSLPI
                     GPRMRSVVVGAPALFERHPAPQKPEDLHGLPCIRHRFPGGNFYRWEFERGGIALEIEV
                     EGPLTLDDVSLMVEPALQGVGLAYVFEEMVREPIADGRLVQVLGDWCPYYAGLHLY"
BASE COUNT          364 a          759 c          729 g          352 t
ORIGIN      
        1 gtacaggccc tggctgaacc acagcgaggc gctgaccatc gccgtcagcg agcagagcac
       61 cagcatcacc gaggcctcca ccctgccccg ccggttcagc cagcggccga tcagcaccag
      121 caccagcgaa gccccgatca ggccgacatt cagccaactg cgcgacacca gcatctgggc
      181 gccgatgcac agcagcacca cgcacagcac gttggcgatc tgcatgagcc gctgcgcctg
      241 caggcggcgt tccagcgcat cgttgccgat atccgattcc agaggtgttg gtgcaggcgt
      301 cataacgacc gacttccatg agcgactgat gcgaagtagg ggcgaaccct agccaataag
      361 agggtcgtcg tacaagtaga ccgatggacg caggaagccg cgcaagagcg cggcttcttc
      421 acatccgacg gactcaggcg gagaagtcgg tggacagtgt cagcgtgcgc caggcccgca
      481 gttccgcctc gacctgggcg tgcttctgct cgatgcgggc cagcgcatcg ctgcccagcg
      541 gcaggcgcag cggcggctgc tcggcattgg ccagcgccag catggcctcg gcgaacttcg
      601 ccgggtcgcc cggctgggca tggttggcgg cggcggcaaa cgtgcgcatg gcaccgaccg
      661 tctcgtcgta gtcgaccagc tccagcgccg tcttcaccag cgactgctca tcgaggaagt
      721 cggtgcggaa gaagcctggc tcgaccacgg tgacgtggat gccgagcggc gcgacttcct
      781 gctgcagcgc ctcgctgatg ccttccacgg cgaacttggt ggagccgtac acgccccagc
      841 ccatgtaggc ctggtagccg cccagcgacg agatattgat gacgtggccg gagcgctggc
      901 ggcgcatgtg cggcagcacg gcgcgggtga cgttgagcac gccgaacacg ttggtggcga
      961 acaggcgctc ggtctccgcc gcgctggttt cctccaccgc gccgagcaca ccgaagccgg
     1021 cgttgttgac cagtacgtcg atgcggccga agcgggcgat gccggcggcg acggcctcaa
     1081 aggcctcgtc ctcgcgggtc acgtccaggc gcacggccag caggttgcga tgctcgccca
     1141 ggcgggcggt gacatcggcg ggcttgcggg cggtggcgat gacggcatcg ccagcgttga
     1201 gggcctgttc ggcgatcagt gcgccgaaac cgcgggaagc tccagtaatc agccaggtac
     1261 gcatatcgaa ttcctcggat gtcgtcccgc accatgcggg ccgttgacga cactctagag
     1321 ctgggttact gatgtgataa tgccaataaa atcgaattgc ttgctgagca gatttcatta
     1381 atgaagaacg tctcccccac cgacctggcg atcttcctgg ccatcgccca gcacctcagc
     1441 ttcgcccgcg ccgcggtcga cctgggcctc acgccctcgg cgctgagcca tgccctgcgc
     1501 gggctggagg aacgcctggg cgtgcgcctg ttcaaccgca ccacccgcag cgtggcgctg
     1561 accgaggccg gcgagcgcct gcaggcgcgg gtgcgtccgg cgttccgcga catcgccgac
     1621 gccctggaag acctcaacaa cttccgcgac aaaccctccg gcagcctgcg catcaatgcc
     1681 gggcgcgccg ccatccagct ggtgctgctg ccgctggtgg ggcgcttcct cgccgcctac
     1741 ccggacgtgc gcctggagct ggtggccgac gatggtctgg tcgatgtggt ctcggccggc
     1801 tttgatgccg gcgtgcgctt cggcgagcgc ctggaggcgg acatggtctc gctgcccatc
     1861 ggcccgcgca tgcgctcggt ggtggtcggc gcccccgccc tgttcgagcg ccaccctgcc
     1921 ccgcagaagc ccgaagacct gcatggcctg ccctgcatcc gccaccgctt tcccggcggc
     1981 aacttctacc gctgggaatt cgagcgcggc ggcatcgccc tggagatcga agtggaaggc
     2041 ccgctgaccc tggacgatgt gagcctgatg gtcgaaccgg cgctgcaggg cgtcggcctc
     2101 gcctacgtat tcgaggaaat ggtccgcgag ccgatcgccg acggccgcct ggtccaggta
     2161 ctcggcgact ggtgccccta ctacgccggc ctgcacctct acta
//
LOCUS       DATIHC010000193         3669 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30887, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000193 DATIHC010000000
VERSION     DATIHC010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3669
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30887"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..799)
                     /locus_tag="VLF16_03075"
     CDS             complement(<1..799)
                     /locus_tag="VLF16_03075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HSX69891.1"
                     /translation="MLAFWLSLALGPVSLPLGDTLLAALRLMGLPIDGEGLQQAELIL
                     GQIRLPRSLLGLCVGIVLALSGVAMQGLFRNPLADPGLVGVAGGAALGAAIAIVGGSM
                     VGGLPPALAPYLLSICAFSGGLIVTAVVYRFGRHDGQTNVATMLLAGVALTAMSGAGV
                     GLFTYLADDATLRSLTFWNLGSLNGASYPRLWPLLLVTLGVAIWLPRRASALNALLLG
                     ESEARHLGFNVERIKLELVLCTALGVGAAVAAAGLIGFIGLVVPHLMR"
     gene            complement(850..1737)
                     /locus_tag="VLF16_03080"
     CDS             complement(850..1737)
                     /locus_tag="VLF16_03080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008055741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSX69892.1"
                     /translation="MRLSKYLLLCGSLLFSHAAAAADLPQRWVSSGGSLSEWVVRLGG
                     ESKLVGVDTTSLHPQTLRQLPSVGYQRALSAEGVLSLRPDILIGSEEMGPPPVIAQIK
                     AAGIRIETLSAKPDLETLERNVLRLGELLGAPERAREEMAAYRQGLQRQADWVARVSK
                     KQQAPRVLMLLGHAGNNIMAAGEDSLAVWLIEHAGGESRTEHSGYKPISNEALLAMDP
                     QVVIFADRSLHGEEARQALLQQNPVLQQTSAARDGRLLTLDPTLLVGGLGPRLPEGLA
                     ELSAPFYPSEQALTAKLDR"
     gene            complement(1739..2806)
                     /locus_tag="VLF16_03085"
     CDS             complement(1739..2806)
                     /locus_tag="VLF16_03085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016494736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChuX/HutX family heme-like substrate-binding
                     protein"
                     /protein_id="HSX69893.1"
                     /translation="MTMPTIAPNASALYQDWQRLRAEQTGLRARDAAARLGVSEAELT
                     ASRLGVDAVRLRTEWAELLPALGELGYIMALTRNEHCVHERKGYYREVSVMANGAMGL
                     VVSPDIDLRLFMTQWASVFAVAESTERGVQRSIQIFDRQGTAVHKVYLTAKSEEAAWA
                     PLVELFRATEQSDELDLQPLAERKAPRADAEVDAAALRADWAELKDTHHFFAMLKRHD
                     VARTQALRLAGREWAEPLATAELPKLLEEAGTRQVPIMVFVGNQHCIQIHSGTVSNLR
                     WMGDWFNVLDPEFNLHLKTPGVVELWRVRKPSSDGIITSYEAFDADGELVVQLFGARK
                     PGVPELVEWRELAESIAALEA"
     gene            3020..>3669
                     /locus_tag="VLF16_03090"
     CDS             3020..>3669
                     /locus_tag="VLF16_03090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010487653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HSX69894.1"
                     /translation="MSTPPFALRPWMALLLLSPSLALAQTTDSSTELAPTQVTGTAAS
                     EALPTTTRTDAETIEKRFIRSFDDLGQRSEPGVNYSRTSESINIRGLDRDRVLTTIDG
                     IRVPWLTDGARSQGPTGGAQGGLDAIDFDGLSSVDIVRGANSSLVGSGALGGAVQLFT
                     LNPDDLLGEGKDFGSLIKTDYDSADNSWGLNGALAGRYQDTSWLLQGGQRQGHELE"
BASE COUNT          624 a         1269 c         1247 g          529 t
ORIGIN      
        1 ggcgcatcag gtgtggcacc accaggccga tgaagccgat caggccggca gccgccacgg
       61 cggcgccgac accgagggcg gtgcacagca ccagctccag cttgatccgc tcgacgttga
      121 aacccaggtg acgcgcctcc gactcgccga gcagcagcgc attgagcgcc gaagcgcggc
      181 gcggcagcca gatggccacg ccgagggtca ccagcagcag cggccacagc cgtggataac
      241 tggcgccatt gaggctgccg aggttccaga aggtcaggct gcgcagcgtg gcgtcgtcgg
      301 ccaggtaggt gaacaggccg acgccggcac cggacatggc ggtcagcgcc acgccggcga
      361 gcagcatggt ggcgacgttg gtctgcccgt catggcggcc gaagcggtag accacggcgg
      421 tcacgatcag gccgccggag aaggcgcaga tcgacagcag atagggcgcc agcgccggcg
      481 gcaagccacc gaccatgcta ccgccgacga tggcgatggc cgcgcccagc gccgcgccgc
      541 cggcgacacc gaccaggccg ggatcggcca gcgggttgcg gaacaggccc tgcatggcca
      601 cgccggacag tgccagcacg atgcccacgc acagccccag caggctacgc ggcaggcgga
      661 tctggccgag gatcagctca gcctgctgca ggccctcgcc atcgatgggc aggcccatca
      721 ggcgcagggc ggccagcagg gtgtcgccca gcggcagact caccgggccg agggccagcg
      781 acagccagaa tgcgagcagc agaagaacgc ccattgccag cagcaatggg cggggtcgaa
      841 aaacaggatt catcggtcga gtttggccgt cagtgcttgc tcggaaggat aaaagggcgc
      901 cgacagctcg gccagcccct cgggcagacg cgggccgaga ccaccgacca gcagggtcgg
      961 gtcgagggtc agcaggcggc cgtcacgtgc cgcgctggtc tgctgcagga ccgggttctg
     1021 ctgcaacagc gcctgccgtg cttcctcgcc gtgcaggctg cggtcggcga agatcaccac
     1081 ctgcgggtcc atggccagca gcgcctcgtt ggagatcggt ttgtagccgc tgtgctcggt
     1141 acggctctcg ccaccggcat gctcgatcag ccacaccgcc aggctgtcct cgcccgccgc
     1201 catgatgttg ttgccagcgt ggccgagcag catcagcacg cgcggtgcct gttgtttctt
     1261 gctcacccgg gcgacccagt cggcctgacg ctgcaggccc tggcgatagg cggccatctc
     1321 ctcgcgagca cgctcgggcg cgccgagcag ctcgcccagg cgcagcacgt tgcgctccag
     1381 agtttccagg tcgggcttgg ccgacagggt ctcgatgcgg atgccggcgg ccttgatctg
     1441 cgcgatcacc ggcggcgggc ccatctcctc gctgccgatc aggatgtccg ggcgcaacga
     1501 cagcacgccc tcggcagaca gcgcgcgctg gtagccgacg ctcggcagct ggcgcagggt
     1561 ctgcgggtgc aggctggtgg tatcgacacc gaccagcttg ctctcaccac ccaggcgcac
     1621 cacccactcg ctcagcgagc cgccggagct gacccagcgt tgcggcagat cggcggccgc
     1681 ggcggcatgg ctgaacagca ggctgccgca cagcaacagg tacttggaca ggcgcatctc
     1741 aggcctccag ggcggcgatg gattcggcca gctcgcgcca ctcgaccagc tccggcacgc
     1801 ccggcttgcg cgcaccgaac agctgcacga ccagctcgcc atcggcgtcg aaggcctcgt
     1861 agctggtgat gatgccgtcg ctgctgggct tgcgcacacg ccacagctcg accacgcccg
     1921 gggtcttcag gtgcaggttg aattcggggt cgagcacgtt gaaccagtcg cccatccagc
     1981 gcagattgct cacggtgccg gagtggatct ggatgcagtg ctggttgccg acgaagacca
     2041 tgatcggcac ctggcgggta ccggcctctt ccagcagctt gggcagctcg gcggtggcca
     2101 gcggctcggc ccactcgcga ccggccaggc gcagggcctg ggtacgggcg acatcgtggc
     2161 gcttgagcat ggcgaagaag tggtgggtgt ccttcagctc ggcccagtcg gcgcgcaggg
     2221 cggcggcgtc cacctcggca tcggcgcgcg gcgccttgcg ctcggccagc ggctgcaggt
     2281 ccagctcatc gctctgctcg gtggcgcgga agagctcgac cagcggcgcc caagccgcct
     2341 cttcgctctt ggcggtgagg tagaccttgt gcacggcggt gccctggcga tcgaagatct
     2401 ggatgctgcg ctgcacgcca cgctcggtgc tctcggcgac ggcgaatacg ctggcccatt
     2461 gggtcatgaa caggcgcagg tcgatgtccg gggaaaccac caggcccatg gcaccgttgg
     2521 ccatcaccga cacctcacgg tagtagccct tgcgctcgtg cacgcaatgc tcgttgcggg
     2581 tcagcgccat gatgtagccc agctcgccca gtgccggcag cagctcggcc cactcggtgc
     2641 gcaggcgcac ggcatccacg cccagacggc tggcggtcag ctcggcctcg ctgacgccga
     2701 gtctggcggc ggcatcgcgg gcgcgcaggc cggtctgttc ggcgcgcagg cgctgccagt
     2761 cctgatagag cgcggaggca ttgggggcga tggtcggcat ggtcatgggc tacctcattt
     2821 cgttgtttgg cgagcgagcc tcccctaccc cgtttagcgg ggaggagaga cggcggctcg
     2881 ttcgagtcgg cgcaggctac tccatcaaga atcaaattcc aatgcttgtg ataacgattt
     2941 gcatttgaga agaaatatcc attaccgtgc tgcccgccaa attcactggc catcaagagc
     3001 cactagcggg agtaaagcca tgtccacccc acccttcgcc ttgcgcccat ggatggcgct
     3061 attgctgctc agcccctcgc tggcgctggc acagaccacg gacagctcca ccgaactcgc
     3121 ccccacccag gtcaccggca ccgccgccag cgaggcgctg ccgacgacga cacggaccga
     3181 tgccgaaacg attgaaaagc gcttcatccg cagcttcgac gacctcggcc agcgctccga
     3241 gcccggcgtc aactacagcc gcaccagcga gagcatcaac atccgcggcc tggatcggga
     3301 ccgggtgctg accaccatcg acggcatccg cgtgccgtgg ctgaccgatg gcgcgcgtag
     3361 ccaaggcccg accggcggcg cccagggcgg cctcgacgcc atcgacttcg acggcctgtc
     3421 ctcggtggac atcgtgcgcg gcgccaactc cagcctggtc ggctccggcg ccctcggcgg
     3481 cgcggtgcag ctgttcaccc tcaacccgga cgatctgctg ggcgaaggca aggacttcgg
     3541 cagcctgatc aagaccgact acgacagcgc cgacaacagc tggggcctga acggcgccct
     3601 cgccggccgc tatcaggaca cgtcctggct gctgcagggc ggccagcgtc agggccatga
     3661 actggaaag
//
LOCUS       DATIHC010000194         2290 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35677, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000194 DATIHC010000000
VERSION     DATIHC010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2290
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35677"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..304)
                     /gene="trxA"
                     /locus_tag="VLF16_03095"
     CDS             complement(<1..304)
                     /gene="trxA"
                     /locus_tag="VLF16_03095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HSX69895.1"
                     /translation="MSDTPYIFDVSGAASFEQLVIENSFHKPVLVDFWAEWCAPCKAL
                     MPMLAKIAEEYRGELLLAKVDCDAEQDIVMRFGIRSLPTVVLFKDGQPVDGFAGAQP"
     gene            complement(451..1107)
                     /locus_tag="VLF16_03100"
     CDS             complement(451..1107)
                     /locus_tag="VLF16_03100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015475389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HSX69896.1"
                     /translation="MKAPTALQDALQQLLGDARLSAEPLPGTDIRLWLVDPSNMDRSF
                     SPEETRRILEEPPYWSFCWASGLALARWLAEKPEWVRGKRVLDFGAGSGVAAIAAAKA
                     GAAEVVACDLDPLAIESCRANAELNGVRLSYSPDFFAEEDRFDLIIVADVLYDRANLP
                     LLDAFLSRGKEALVADSRVKDFQHPLYRRLGLLDACTWPDLAEPAEFRSVSLYHARRG
                     "
     gene            complement(1104..1559)
                     /locus_tag="VLF16_03105"
     CDS             complement(1104..1559)
                     /locus_tag="VLF16_03105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaY family lipoprotein"
                     /protein_id="HSX69897.1"
                     /translation="MPFRPALACLCLLLAACAGEPSKPAAPPAAAKPAVAIEPAAPAE
                     QPLPAHLRELRGSLLTPPAGSLVEIALLVVDERDRPRQLLGSLRLAGDGGALPFRLPF
                     NPEYFPTGARVELRARISQSGRLILRLPPQRVTLADDRNFGALPLVSAP"
     gene            1676..2140
                     /gene="nrdR"
                     /locus_tag="VLF16_03110"
     CDS             1676..2140
                     /gene="nrdR"
                     /locus_tag="VLF16_03110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HSX69898.1"
                     /translation="MHCPFCSANDTKVIDSRLVAEGEQVRRRRECVACGERFTTFETA
                     ELVMPRLIKSDGSRQPFDEEKLRAGMQRALEKRPVSVERLEEAIAHIKHRLRATGERE
                     IKSRVLGELVMTELQKLDEVAYIRFASVYRRFQDLNEFREEIERLAREPSKE"
     gene            2137..>2290
                     /locus_tag="VLF16_03115"
     CDS             2137..>2290
                     /locus_tag="VLF16_03115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin biosynthesis protein RibD"
                     /protein_id="HSX69899.1"
                     /translation="MSAADQQFMARALELARKGLYSTHPNPRVGCVIVRDGRIVGEGW
                     HAKAGEP"
BASE COUNT          356 a          765 c          841 g          328 t
ORIGIN      
        1 ccggctgggc gccggcgaag ccgtcgaccg gctgaccgtc cttgaacagc accacggtcg
       61 gcaggctgcg gatgccgaag cgcatgacga tgtcctgctc ggcatcgcag tcgaccttgg
      121 ccagcagcag ctcgccgcgg tattcctcgg cgatcttcgc cagcatcggc atcagcgcct
      181 tgcacggcgc gcaccactcg gcccagaagt ccaccagcac cggcttgtgg aaggagttct
      241 cgatcaccaa ctgctcgaag ctggcggcgc cggatacgtc gaagatgtag ggggtatcgc
      301 tcatggcaat tctcgattgg cggcccgcgc tgcggggccg ggaacggtga tgcgactata
      361 aatgcgggcg gcgcccggcg gaaacaagta gcccggatgc aatccggggc gcgcagtggc
      421 ctggttcccg gattgcctcc gggctacggc tcagccgcgc ctggcgtggt agaggctgac
      481 gctgcggaat tccgccggct cggccaggtc cggccaggtg caggcatcga gcagacctag
      541 gcgccggtac agcggatgct ggaagtcctt gacccgcgag tcggccacca gggcttcttt
      601 gccgcggctg aggaaggcgt cgagcagcgg caggttggcg cggtcgtaga gcacgtcggc
      661 gacgatgatc aggtcgaagc ggtcctcttc ggcgaagaag tccggcgagt agctcagccg
      721 cacgccattc agctcggcgt tggcgcggca ggattcgatg gccagcgggt cgagatcgca
      781 ggccaccact tccgccgccc cggccttggc cgcggcgatg gctgccacgc cggagccggc
      841 gccgaagtcg agcacgcgct tgccacgcac ccattcgggc ttctccgcca gccagcgcgc
      901 cagggccagg ccgctggccc agcagaagct ccagtagggc ggctcctcga ggatgcgccg
      961 ggtctcctcc gggctgaagc tgcggtccat gttgctcggg tcgaccagcc acaggcggat
     1021 gtcggtgccg ggcaggggct cggcgctcag gcgggcgtcg ccgagcagct gttgtagggc
     1081 gtcctgcagc gcggtcggag ccttcatggc gcgctgacca ggggcagggc gccgaagttg
     1141 cggtcgtcgg ccaaagtcac gcgctgcggc ggcaggcgca ggatcagccg gccggactgg
     1201 ctgatgcgcg cgcgcagctc cacccgtgcg ccggtaggga aatactcggg gttgaacggc
     1261 aggcggaagg gcagggcgcc gccatcgccg gccagcctga ggctgcccag cagttgccgc
     1321 ggacggtcgc gctcgtccac caccagcagc gcgatctcca cgaggctgcc ggccggcggg
     1381 gtcagcaggc tgccgcgcag ctcgcgcaga tgggcgggca gcggttgctc cgcgggcgcg
     1441 gcgggctcga tcgccaccgc gggtttggcg gccgcgggcg gcgccgccgg tttggagggt
     1501 tcgccggcac aggcggccag cagcaggcac aggcaggcga gggcggggcg aaagggcatg
     1561 acggcatcca ggggtcgcgc aggtaacggg cgcctgtata ccgcaacggg cgccggcttg
     1621 tcttgccggg accatgcgct accatgggcc accgtttcgt agggcctctt cctccatgca
     1681 ttgtccgttc tgctccgcca acgacaccaa ggtcatcgat tcccgcctgg tcgccgaggg
     1741 cgaacaggtg cgccggcgcc gcgaatgcgt ggcctgcggc gagcgcttca ccaccttcga
     1801 gaccgccgaa ctggtgatgc cgcggctgat caagtccgac ggcagccgcc agcccttcga
     1861 cgaggagaag ctgcgcgccg gcatgcagcg cgcgctggag aagcgcccgg tgagcgtcga
     1921 gcgcctggag gaggccatcg cccacatcaa gcaccgcctg cgcgccaccg gcgagcgcga
     1981 gatcaagtcg cgggtgctcg gcgaactggt gatgaccgag ctgcagaagc tcgacgaggt
     2041 cgcctatatc cgcttcgcct cggtgtaccg gcgcttccag gacctcaacg agttccgcga
     2101 ggagatcgag cgtttggccc gcgagccgtc caaggaatga gtgcggccga ccagcagttc
     2161 atggcccgcg cgctggagct ggcgcgcaag gggctgtact ccacccatcc caatccgcgc
     2221 gtcggctgcg tcatcgtgcg cgacggcagg atcgtcggtg agggctggca cgccaaggcc
     2281 ggcgagccgc
//
LOCUS       DATIHC010000195         5343 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2865, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000195 DATIHC010000000
VERSION     DATIHC010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5343
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2865"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..439
                     /locus_tag="VLF16_03120"
     CDS             <1..439
                     /locus_tag="VLF16_03120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA repair protein RecO C-terminal
                     domain-containing protein"
                     /protein_id="HSX69900.1"
                     /translation="YLNELLLRLLPAEDPHPALFEHYALTLQALAANPPLEPLLRAFE
                     WRLLDELGYGFALDIDIAGQAIAADGLYRLQPDAGLEPVGQLQPGLFQGVDLLAMAKA
                     DWSAPGALAAAKRLMRQALAPHLGGRPLVSRELFMTLKEPARD"
     gene            432..1178
                     /gene="pdxJ"
                     /locus_tag="VLF16_03125"
     CDS             432..1178
                     /gene="pdxJ"
                     /locus_tag="VLF16_03125"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004423891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033856 - pyridoxine 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HSX69901.1"
                     /translation="MTEANRILLGVNIDHVATLRQARGTRYPDPVKAALDAEEAGADG
                     ITVHLREDRRHIQERDVRLLKEVLQTRMNFEMGVTDFMLDFAEQIRPEHICLVPETRQ
                     ELTTEGGLDVAGQEERISAAVQRLAKLGCEVSLFIDAEERQIEAARRIGAPAIELHTG
                     RYADAHTPEEAARELARIRDGVAYGLAHGLIVNAGHGLHYHNVEPVAAIAGVHELNIG
                     HAIVAHALFVGFKGAVAEMKQLIVAAANRG"
     gene            complement(1181..1942)
                     /locus_tag="VLF16_03130"
     CDS             complement(1181..1942)
                     /locus_tag="VLF16_03130"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HSX69902.1"
                     /translation="MRIRPLLPLAIGLLIGGLAHAAPIRLVTGDEYAPYTGRALPEGG
                     MLTELVLRVLKEAGHQPSLTWLPWKRGYRAALKGNFDATYPYLPTDEREADYLFSAPL
                     YETSQRLFSRTGDALEPDAPERLSGKRMCLPLGWQPPPRFAALLADGRIGLHEPPDLT
                     ACARLIDLGRDDFFVADSLLGERALRRSGIDASRVIASRGRVDSNTLHLLVPRNRAGG
                     QQLIDEFNDALRRLRDSGDYRRIVDAHRGHASGTD"
     gene            complement(2039..2596)
                     /locus_tag="VLF16_03135"
     CDS             complement(2039..2596)
                     /locus_tag="VLF16_03135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016254128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter"
                     /protein_id="HSX69903.1"
                     /translation="MNRHYYISDNLDELERLEDELEARGIHTEQIHVLSERDAEVERH
                     RHLHQVPSILKRDLVHSGSVGSLIGLALAVMVLLLAWLNDWAATPAGWIPFVFLAVVL
                     IGFSIWEGSLFGAQQPSDTFRRFAERLREGKHLFFVDVSPVQEPILSQVVAHHPRLEQ
                     AGTGAASPEWALGLQHQWNRLRRMM"
     gene            complement(2673..3692)
                     /locus_tag="VLF16_03140"
     CDS             complement(2673..3692)
                     /locus_tag="VLF16_03140"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003462306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HSX69904.1"
                     /translation="MFKRLRNDFQLSIITLMGIIGVLGITPYAAYRLLHGNLLVGIAD
                     CVIVLSTLAAVIYAWRTGDTEKPGLYLAAVFSVGATLIAINLGVNGLFWIYPLILFNF
                     FMVSPGKAIAATLLVLASLVGHALWVPGSVFDSHYQMVSFLVTNAMAGVLTFIFAYRT
                     RTQREQLQLLAIQDPLTGARNRRAMNEELKIAVSSKRRHGRSYGVLAMDLDHFKLVND
                     RYGHQAGDQVLIDYVKLIRNCSRQEDRLFRFGGEEFLLLLPDTDTQGLEAAAQNLLET
                     VRDNLRGPGGPVTVSIGGAMLRSGEPWGQWLQRADQCLYRAKSEGRNRTIIDRPAVND
                     LAPSH"
     gene            complement(3809..3991)
                     /locus_tag="VLF16_03145"
     CDS             complement(3809..3991)
                     /locus_tag="VLF16_03145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009621696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69905.1"
                     /translation="MSAKKTIQQPKPAAAVASRESIEAQVSAFLKSGGEIQQIAKGVS
                     GQSWSTPSRHIVISKK"
     gene            complement(4058..4267)
                     /locus_tag="VLF16_03150"
     CDS             complement(4058..4267)
                     /locus_tag="VLF16_03150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HSX69906.1"
                     /translation="MSVRQTGTVKWFNDEKGFGFITPESGADLFVHYRSIQSAGFKSL
                     KEGQQVSFIAVQGQKGMQADEVQVI"
     gene            complement(4422..5141)
                     /locus_tag="VLF16_03155"
     CDS             complement(4422..5141)
                     /locus_tag="VLF16_03155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015477422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HSX69907.1"
                     /translation="MPMRCALLLLCCFALHAFADPPRTFAEAKKVAWQLYARQSVESY
                     CGCRYNGKRVDLQSCGYRPRKNPRRAARIEWEHLVPAWVIGHQRRCWQQGGRRHCSRH
                     DETFRRAEADLFNLVPSIGELNGDRSNLPFAWLPQSPSQYGACPMVVDFKAGKAMPRA
                     KVRGMIARTYFYMSQRYGLRLSKQERRLFETWSRHYPVEPWESQRNRRIACVMGWSNP
                     FVGPVDLRQCPAPLARKDRND"
BASE COUNT          912 a         1680 c         1814 g          937 t
ORIGIN      
        1 gtacctcaac gagctccttt tgcgcctgct gcccgccgaa gacccgcatc ccgcgctgtt
       61 cgaacattac gccctgacgc tccaggccct ggccgccaac ccgccgctgg aaccgctgct
      121 gcgcgccttc gaatggcgcc tgctggacga gctgggctat ggtttcgccc tggatatcga
      181 tatcgccggc caggccatcg ccgccgacgg cctctaccgt ttgcagccgg acgccggcct
      241 ggagccggtg gggcagttgc agcccggcct gttccagggc gtcgatctgc tggccatggc
      301 caaggccgac tggtccgccc ccggcgctct ggccgccgcc aagcgtctga tgcgccaggc
      361 cctggcccct catctgggcg gtcgaccgct ggtcagccgc gaactcttca tgaccctcaa
      421 ggaacctgcc cgtgactgaa gccaaccgca ttctgctcgg cgtcaacatc gaccacgttg
      481 ccaccctgcg tcaggcccgc ggcacccgct acccggaccc ggtcaaggcc gcgctggatg
      541 ccgaggaggc cggtgccgac ggcattaccg tgcacctgcg cgaggaccgc cggcacatcc
      601 aggagcgcga cgtgcgcctg ctcaaggagg tgctgcagac gcgcatgaac ttcgagatgg
      661 gcgtcaccga cttcatgctc gacttcgccg agcagatccg cccggagcat atctgcctgg
      721 tgcccgagac ccgtcaggag ctgaccaccg agggtggcct cgacgtggcc ggccaggagg
      781 agcggatcag cgcagcggta cagcgcctgg ccaagctggg ctgcgaggtg tcgctgttca
      841 tcgacgccga ggagcggcag atcgaggcgg cccggcgcat cggtgcgccg gccatcgagc
      901 tgcacaccgg ccgctatgcc gacgcccata cgccggaaga ggccgcccgc gaactggcgc
      961 gcatccgcga cggtgtcgcc tacggcctgg cccatggcct gatcgtcaat gccggccatg
     1021 gcctgcacta ccacaacgtc gagccggtgg cggcgattgc cggtgtgcac gagctgaaca
     1081 tcggccacgc catcgtcgcc catgccctgt tcgtcggctt caagggcgcg gttgcggaga
     1141 tgaagcagct gatcgtcgct gccgccaatc gcggctgagc ctaatcggtg cccgatgcat
     1201 gtccacggtg ggcgtcgact attcgccggt aatctccgct gtcccgcagg cgacgcagtg
     1261 cgtcgttgaa ctcgtcgatc aattgctggc cgccggcacg attgcgcggt accagcaggt
     1321 gcagcgtgtt gctgtcgacc cggccacgag aggcgatgac ccgtgacgca tcgatgcccg
     1381 agcggcggag ggcgcgttca ccgagcagac tgtcggcgac gaagaagtca tcgcggccga
     1441 ggtcgatcag ccgggcgcag gccgtcaggt ccggaggttc gtgcaacccg atgcgtccat
     1501 ccgccagcag cgcggcaaaa cgtggcggtg gctgccagcc cagcggcagg cacatgcgct
     1561 tgccggagag ccgctccggt gcgtccggct ccagcgcgtc gccggtgcgg ctgaacaggc
     1621 gctggctggt ctcgtagagt ggcgccgaga acaggtaatc ggcctcgcgc tcgtcggtgg
     1681 gcaggtaggg gtaggtggcg tcgaagtttc ccttgagcgc ggcacggtag ccgcgtttcc
     1741 agggcagcca ggtcaggctc ggctggtggc ccgcttcttt cagaacacgc agaaccagct
     1801 cggtcagcat gccgccttcg ggcagggcgc gaccggtata gggggcatat tcgtcgccgg
     1861 tcaccaggcg gatcggcgcg gcgtgtgcca ggccgccgat gagcaggcca atggccaggg
     1921 gcaggagcgg acgaatcctc atggagggga aggaccttga ccggaaaagc gcaacggtag
     1981 tgcgctcagt ctagcccagc aagacggggc gagcgtccat gctcgttccc gttctgcatc
     2041 acatcatgcg gcgtaaacgg ttccattgat gctgcaggcc gagggcccac tcggggctcg
     2101 ctgcgccggt gccggcctgc tccagccgcg ggtggtgagc caccacctgg ctgaggatgg
     2161 gttcctggac cgggctgacg tcgacgaaga acaggtgctt gccctcgcgc aggcgctcgg
     2221 cgaagcggcg gaatgtatcg ctgggctgct gcgcgccgaa caggctgccc tcccagatgc
     2281 tgaagccgat cagcaccacc gcaagaaaca cgaaaggaat ccagccagcc ggcgtggccg
     2341 cccaatcgtt cagccaggcc agcagcagga ccattaccgc cagggcaagg ccgatgaggc
     2401 tgccgaccga tcccgaatgc accaggtcgc gcttgagaat cgagggtacc tggtgcaggt
     2461 gtcggtggcg ctccacctcg gcgtcccgct cgctgagcac atggatctgc tcggtatgga
     2521 tgcccctggc ctccagctcg tcttccagcc gttcgagttc gtccaggttg tcgctgatgt
     2581 agtaatgccg gttcatggca tacctcccat ctctgcgcgc cggttccccg agccgggcgg
     2641 atcaggccga cgttggcctg gttatatttt aatcagtggc tgggcgcgag gtcgtttacc
     2701 gccggacggt cgatgatggt gcggttgcgc ccctcgctct tggcgcggta caggcactgg
     2761 tcggcgcgct gcaaccattg cccccacggt tcgccgctgc gcagcatggc gccgccgatg
     2821 gagaccgtga ccgggccgcc ggggccgcgc aggttgtcgc gcactgtttc cagcagattc
     2881 tgcgcggcgg cctccaggcc ctgggtgtca gtatccggga ggagcaggag gaattcctca
     2941 ccgccgaaac gaaacaggcg gtcttcctgc cgtgagcagt ttctgatcag cttcacgtag
     3001 tcgatcagta cctggtcgcc ggcctggtgg ccgtagcggt cgttgaccag cttgaaatga
     3061 tccaggtcca tggccagcac gccatagctg cggccatggc ggcgcttgct ggagacggcg
     3121 atcttcagct cctcgttcat ggcccggcgg ttgcgcgcgc cggtcagcgg gtcctggatg
     3181 gcgagcagct gcagctgttc gcgctgggtg cgggtgcggt aggcgaagat gaaggtcagc
     3241 acgcccgcca tggcgttggt gaccaggaac gagaccatct gataatggct gtcgaacacg
     3301 ctgccgggca cccacagcgc gtggcccacc aggctcgcca gcaccagcag ggtggctgcg
     3361 atggccttgc cgggcgacac catgaagaag ttgaagagga tcagcggata gatccagaac
     3421 aggccgttga cgcccaggtt gatggcgatc agcgtggcgc cgacggagaa cacggcggcc
     3481 agatacaggc cgggcttctc ggtatccccg gtgcgccagg cgtagatcac ggcggcgagg
     3541 gtggagagca cgatcacgca atcggcgatg ccgaccagca ggttcccgtg gagcagccgg
     3601 taggccgcgt aaggtgtgat gcccagtacc ccgatgatgc ccatcagggt gatgatggac
     3661 agctggaagt cgttgcgcag tcgcttgaac atcagcgcgg ctctctgctc ttggctctta
     3721 tcgttgttat gagccaagga tgcagggctt tgttcatgtc ggcaagaagg tctttggcga
     3781 agtgccagta tcttgccgga ggagtgacct acttcttgct gatgacgata tgtcggctag
     3841 gcgtgctcca ggattggccg ctgacgccct tggcgatctg ctggatctcg ccgccggatt
     3901 tgaggaaggc ggaaacctga gcttcgatgg actcgcggct cgcgactgcg gcggccggtt
     3961 tcggttgctg aatggtcttc ttggcgctca tggaattcct cgatgtgggc agataaaaaa
     4021 accggcccta gggccggttc ttggcgacgc ggctagatca gatgacctgg acttcgtcgg
     4081 cctgcatgcc tttctggccc tgcacggcga tgaaggagac ctgctggcct tccttcaggc
     4141 tcttgaagcc ggcgctctgg atcgagcggt agtgcacgaa caggtcggcg ccgctttccg
     4201 gagtgatgaa gccgaagcct ttttcatcgt tgaaccattt gacggtgccg gtttgacgta
     4261 cggacatggg gattgctcct tgaacaaagt ggacacgaca ctggaaacgc ccagatcgcg
     4321 actgagtgca aagaacagaa accgaaggga gtaaaccggg acgatttgcg atggcacatg
     4381 cagcacagtg cggccaccct acagggaaaa cgccttttta cctagtcatt tctgtctttt
     4441 ctggcgagtg gagcggggca ctgacgcagg tcgacggggc cgacgaaggg gttgctccag
     4501 cccatcacgc aggcaatgcg acggttgcgc tggctctccc acggctcgac gggataatgc
     4561 cggctccagg tctcgaataa ccgacgctcc tgtttcgaca gacgcaggcc gtaacgctgg
     4621 ctcatgtaga agtaggtgcg ggcgatcatc ccgcgcacct tggcccgggg catcgccttg
     4681 ccggccttga agtccaccac catcgggcag gcgccgtatt ggctgggcga ctgcggcagc
     4741 caggcgaagg gcaggttgct gcggtcgccg ttcagctcgc cgatgctcgg caccagattg
     4801 aacaggtcgg cctcggcgcg gcggaaggtt tcgtcgtggc gcgagcagtg cctgcgcccg
     4861 ccttgctgcc agcagcgccg ctgatgaccg atcacccagg ccggcaccag atgctcccat
     4921 tcgatgcgcg cggcgcgccg tgggttcttg cgtgggcggt agccgcaact ctgcaggtcg
     4981 acccgcttgc cgttgtagcg gcaaccgcaa taggactcca ccgactgacg ggcatagagc
     5041 tgccaggcga ctttcttggc ttcggcaaag gtgcggggtg ggtcggcgaa cgcgtgaagg
     5101 gcgaagcagc agagcaacag cagggcacag cgcatgggca tggagacggc gatccgaaaa
     5161 gcgccgcatc ataccggcgg tcgtgcgctt gccaatcgtg gcagctggcc acgccatcgc
     5221 gcggtccaca tgcgggtagc atggtgtttg tgaagtacag aggagatccg tcatgcgcag
     5281 tctgattctg ctgctcggcc tgctggccac cggtgcggct ctggccgacg agccggtgcg
     5341 ccg
//
LOCUS       DATIHC010000196         2276 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_330, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000196 DATIHC010000000
VERSION     DATIHC010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2276)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2276)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2276
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            10..1302
                     /locus_tag="VLF16_03160"
     CDS             10..1302
                     /locus_tag="VLF16_03160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009043944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="erythromycin esterase family protein"
                     /protein_id="HSX69908.1"
                     /translation="MIQLLRRSAEPLPDDMDAMEFGAPFARYGDARVVLIGEASHGTA
                     EFYRARAAITRRLIQQHGFNIVAIEGDWPDVTAIDRHVRHLDGATADQAAFSRFPTWM
                     WRNREVADFVRWLRLHNATQAQNQRVEMRGLDIYSLGSSIDSVLRYLDENDPQRAAEA
                     RQRYACLTPWQNDPAGYGERVEWGGGDSCEQAVIEQLSELLWARLESLERDEGLFDAA
                     QNARVVRAAEQYYRMMYRASVSSWNLRDNHMFDTLKQVLKHRGSQTRAVVWAHNSHIG
                     DAAATAMGWQGEFNLGQLCRVAWGDDAVLIGMGTDRGRVAAADDWGGPVQMKDIVPAR
                     DDSWERIFLRVGQSPALFDWRGSGKSTLRHALCEPLLQRAIGVIYRPQTERRSHYFES
                     VLGEQFDAYLWFENTTPVTPLDGGEARAGEAETFPFGV"
     gene            1304..1951
                     /locus_tag="VLF16_03165"
     CDS             1304..1951
                     /locus_tag="VLF16_03165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009619765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HSX69909.1"
                     /translation="MDAFRDRRHAGQALAERLRDVSLKRPVVLALPRGGVPVGHEVAS
                     ALNAPLEVLLVRKIGAPGNEEFALGAVVGGAEPQWVMDEDMMRLFDPPPGWFEHKVAE
                     QLDEIERRRALYCGARLPTVLEGRDLLLVDDGLATGSTARVAIQALRSGGAGRIVLAV
                     PVGPLETVQRLRPLVDELVCLETPDPFRAVGNHYRDFRQVTDQEVVKLLAPGALG"
     gene            1948..>2276
                     /locus_tag="VLF16_03170"
     CDS             1948..>2276
                     /locus_tag="VLF16_03170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007895707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase NADP-binding
                     domain-containing protein"
                     /protein_id="HSX69910.1"
                     /translation="MNAPYPFDGRLVLIGFGCIGRGVLPLLLRHIDLQPQQVQIISPD
                     EDDREVADRHGVPFRALALTEDNYRAELEPLLGAGDFLLNLSVDVESAALIALAQERG
                     ALYLDTCT"
BASE COUNT          346 a          789 c          804 g          337 t
ORIGIN      
        1 cccgaagaat tgatccagtt gctgcggcgc agcgccgagc cgctgccgga cgacatggac
       61 gcgatggaat tcggcgcgcc cttcgcccgc tacggcgacg cccgcgtggt gctgatcggc
      121 gaggccagcc acggcaccgc cgagttctac cgggcccgtg cggccatcac ccggcgtctg
      181 attcagcagc acggcttcaa tatcgtcgcc atcgagggcg actggccgga cgtgaccgcc
      241 atcgaccgcc acgttcgcca cctggacggc gccaccgcgg atcaggcggc gttctcccgc
      301 tttcccacct ggatgtggcg caaccgcgag gtcgcggact tcgtccgttg gctgcgcctg
      361 cacaacgcca cccaggcgca gaaccagcgg gtcgagatgc gcggcctgga catctatagc
      421 ctgggctcct cgatcgactc ggtgctgcgc tacctcgacg agaacgaccc gcagcgcgcg
      481 gccgaggcgc gccagcgcta cgcctgcctg acgccctggc agaacgatcc ggccggctat
      541 ggcgagcggg tcgaatgggg cggcggcgac tcctgcgagc aggcggtgat cgaacagctg
      601 agcgaactgc tgtgggcccg cctggaaagc ctggagcgcg acgaaggcct gttcgacgcg
      661 gcgcagaacg cccgcgtggt gcgcgccgcc gagcagtact accggatgat gtaccgcgcc
      721 tcggtgtcgt cgtggaacct gcgtgacaac cacatgttcg acaccctcaa gcaggtgctc
      781 aagcaccgcg gcagccagac ccgcgcggtg gtatgggcgc acaactcgca catcggcgat
      841 gccgcggcga cggccatggg ctggcagggc gaattcaacc tcggccagct gtgccgcgtg
      901 gcctggggcg acgacgccgt gctgatcggc atgggcaccg accgcggccg ggtcgccgcc
      961 gccgacgact ggggcgggcc cgtacagatg aaggacatcg tgccggcgcg ggacgacagc
     1021 tgggaacgca tcttcctgcg cgtcggccag tcgccggcgc tgttcgactg gcgcggctcc
     1081 ggcaagtcga ccctgcgcca cgcgctgtgc gagccgctgc tgcaacgtgc catcggggtg
     1141 atctaccggc cgcagaccga gcgccgcagc cactatttcg agagcgtgct gggcgagcag
     1201 ttcgacgcct acctgtggtt cgagaacacc acgccggtga cgccgctgga cggcggcgag
     1261 gcccgcgccg gcgaagcgga aacctttccc tttggagtct gagatggatg cctttcgtga
     1321 ccgtcgacac gccggtcagg cgctggccga acggctccgc gacgtatcgc tcaagcgtcc
     1381 ggtggtgctg gccctgccgc gtggcggcgt acccgtcggc catgaggtgg ccagcgccct
     1441 gaacgcgccg ctggaggtgc ttctggtacg caagatcggc gcgcccggca acgaggaatt
     1501 cgccctcggc gcggtggtcg gcggcgccga accgcaatgg gtgatggacg aggatatgat
     1561 gcgcctgttc gatccgccgc cgggctggtt cgagcacaag gtcgccgagc agctggacga
     1621 gatcgagcgc cgccgcgcgc tgtattgcgg cgcgcgcctg ccgacggtgc tcgaaggccg
     1681 cgacctgttg ctggtggacg acggcctggc caccggcagc accgcgcggg tggccatcca
     1741 ggcgctgcgc agcggcggcg ccgggcgcat cgtgctggcg gtgccggtgg gcccgctgga
     1801 aaccgtgcag cgcctgcggc cgctggtcga tgagctggtc tgcctggaaa cgcccgaccc
     1861 gttccgcgcc gtgggcaacc actaccgcga cttccgccag gtgacggatc aggaagtggt
     1921 gaagctgctg gcaccgggag ccctaggatg aacgcaccct atcccttcga cggccgcctg
     1981 gtgctgatcg gcttcggctg catcggccgc ggcgtgctgc cgctgttgct gcgtcacatc
     2041 gacctgcagc cgcagcaggt gcagatcatc agccccgacg aggacgaccg cgaggtcgcc
     2101 gaccgtcatg gcgtgccctt ccgcgcgctg gccctgaccg aggacaacta ccgcgccgaa
     2161 ctggagccgc tgctcggcgc cggcgacttt cttctcaacc tctcggtgga cgtggaaagc
     2221 gcggcgctga tcgccttggc ccaggagcgc ggcgccttgt acctggacac ctgcac
//
LOCUS       DATIHC010000197         2659 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_40285, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000197 DATIHC010000000
VERSION     DATIHC010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2659
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40285"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(18..2615)
                     /locus_tag="VLF16_03175"
     CDS             complement(18..2615)
                     /locus_tag="VLF16_03175"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004421062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSX69911.1"
                     /translation="MPTRKFGINLVVVVAIAALFTGFWALYNRPVSAPDWPEQISGFS
                     FSPFRTGQSPMTGVYPSDEQIRADLELLSQQTDNIRTYSVDGKLADIPRIAEEFGLRV
                     TLGIWISADLERNEREIAKAIQLANESRSVVRVTVGNEAVYRTEIKVPDLIAYIDRVR
                     SAVKVPVSTSEQWHIWQENPELADHVDLIAAHVLPYWEFVPMEDSTDFVLERAKDMKR
                     LFPKKPLLLSEVGWPSNGRTRGGAEADQAEQAVYLRTLVNSLNAKGYNYFVIEAFDQP
                     WKASEEGSVGAYWGVYNLDRQPKFAFEGPVIAIPQWRILAVASVVMGLLALALMLIDG
                     SALRQRGRTFLTFVAFVGGSALVWIAYDYSQQYSTWFSLTVGGLLGIGALGVFIVLLT
                     EAHELAETAWIRNRRRPFMPVLADSAYRPKVSIHVPCYNEPPEMVKQTLDALAALDYP
                     DYEVIIIDNNTKDPKVWEPVEAYCQQLGPRFRFFHVAPIEGFKGGALNYILPHTAPDA
                     EVVAVIDSDYCVDRNWLRHMVPHFADPKIAVVQSPQDYRDGDESAFKKLCYAEYKGFF
                     HIGMVTRNDRDAIIQHGTMTMIRRSVMDELKWADWTICEDAELGLRVFEKGYSAAYAH
                     QSFGRGLMPDTFIDYKKQRFRWAYGAIQIMKGHARALFRGEGSELTRGQRYHFIAGWL
                     PWIADGLNIFFTVGALLWSAAMIIVPNRVDPPLMIFAIPPLALFFFKFGKIMFLYHKA
                     VGVDLKRSFQAAIAGLALSHTIAKAVLYGTFTKTIPFFRTPKMASNHGILVALAEARE
                     EVFVMLLLWGAAIGIAFAQDIGNADVKFWVATLLVQSLPYLAALLMALLSSLPKPQEK
                     DIGEPAGAA"
BASE COUNT          451 a          819 c          938 g          451 t
ORIGIN      
        1 cgacgagggc gggtgggtca ggccgcgccg gccggctcgc cgatgtcctt ctcctgcggc
       61 ttgggcagcg aggagagcag cgccatcagc agtgcggcga ggtagggcag cgactgcacc
      121 agcagggtgg cgacccagaa cttcacgtcg gcgttgccga tgtcctgggc gaaggcgatg
      181 ccgatcgccg cgccccacaa cagcagcatg acgaacactt cctcacgggc ctcggccagg
      241 gccaccagga tgccgtggtt gctggccatc ttcggcgtgc ggaagaacgg gatggtcttg
      301 gtgaaggtcc cgtacagcac ggccttggcg atggtgtgcg acagcgccag gccggcgatg
      361 gcggcctgga acgaacgctt caggtccacc ccgaccgcct tgtggtagag gaacatgatc
      421 ttgccgaact tgaagaagaa cagcgccagc ggcgggatgg cgaagatcat cagcggcggg
      481 tcgacccggt tcggcacgat gatcatcgcc gccgaccaga gcagggcgcc gacggtgaag
      541 aagatgttca ggccgtcggc gatccacggc agccagccgg cgatgaagtg gtagcgctgg
      601 ccgcgggtca gctccgaacc ctcgccgcgg aacagcgcgc gggcgtggcc cttcatgatc
      661 tggatggcgc cataggccca gcggaagcgc tgcttcttgt agtcgatgaa ggtgtccggc
      721 atcaggccgc ggccgaagct ctggtgggcg taggcggcgg agtagccctt ctcgaacacg
      781 cgcagaccca gctcggcgtc ctcgcagatg gtccagtcgg cccacttcag ctcgtccatc
      841 acgctgcggc ggatcatggt catggtgccg tgctggatga tcgcgtcgcg gtcgttgcgg
      901 gtgaccatgc cgatatggaa gaagcccttg tactcggcat agcagagctt cttgaaggcg
      961 ctctcgtcgc cgtcgcggta gtcctgtggc gactgcacca cggcgatctt cggatcggcg
     1021 aagtgcggca ccatgtgccg gagccagttg cggtcgacgc agtagtcgga gtcgatcacc
     1081 gccaccactt cggcatccgg cgcggtgtgc ggcaggatgt agttcagcgc gccgcccttg
     1141 aagccctcga tgggcgccac gtggaagaag cggaagcgcg ggcccagctg ctggcagtag
     1201 gcctcgaccg gctcccagac cttcgggtcc ttggtgttgt tgtcgatgat gatgacttca
     1261 tagtccgggt agtccagggc cgccagggcg tccagggtct gcttcaccat ctccggcggc
     1321 tcgttgtagc agggtacgtg gatcgacacc ttgggccggt aggcgctgtc ggccagcacc
     1381 ggcatgaacg gtcggcggcg attgcggatc cacgccgtct cggccagttc gtgggcctcg
     1441 gtgagcagga cgatgaacac gcccagtgcg ccgatgccga gcaggccgcc gaccgtcagg
     1501 ctgaaccagg tactgtattg ctggctgtag tcgtaggcga tccacaccag ggcggaaccg
     1561 ccgacgaagg cgacgaaggt gaggaaggtg cgcccgcgct gacgcagggc ggagccgtcg
     1621 atcagcatca gcgccaaggc cagcaggccc atcaccaccg aggccacggc gaggatgcgc
     1681 cactgcggaa tggcgatcac cgggccctcg aaggcgaact tgggctggcg gtcgaggttg
     1741 tacacgcccc agtaggcgcc caccgaacct tcctcgctgg ccttccacgg ctggtcgaag
     1801 gcctcgatga cgaagtagtt gtagcccttg gcattcaggg aattgaccag ggtgcgcagg
     1861 tacacggcct gctcggcctg gtcggcctcg gcgccgccgc gggtgcggcc attgctcggc
     1921 cagccgactt cggacagcag cagcggcttc ttcgggaaca gccgcttcat gtccttggcg
     1981 cgctcgagga cgaagtcggt ggaatcctcc atcggcacga attcccagta cggcagcacg
     2041 tgggcggcga tcaggtcgac atggtcggcc agctcgggat tttcctgcca gatgtgccac
     2101 tgctcggagg tgctcaccgg caccttgacg gcgctacgca cgcggtcgat gtaggcgatc
     2161 agatccggga ccttgatctc ggtgcggtac accgcctcgt tgcccaccgt gacccgcacc
     2221 acgctgcgcg actcgttggc gagctggatg gccttggcga tctcgcgctc gttgcgttcc
     2281 agatcggcgc tgatccagat gccgagggtc acccgcaggc cgaactcttc ggcgatgcgc
     2341 ggaatgtccg ccagcttgcc gtcgaccgag taggtgcgga tgttgtcggt ctgctggctc
     2401 agcagttcga ggtcggcgcg aatctgttcg tcgctgggat agaccccggt catcgggctc
     2461 tggccggtgc ggaagggcga gaaggagaag ccggagatct gctccggcca gtccggggcg
     2521 ctgaccgggc ggttgtagag ggcccagaac ccggtgaaga gggcggcgat cgccacgacg
     2581 accaccaggt tgattccgaa tttgcgcgtt ggcatggcta ctcaggggtt ccgctgcaag
     2641 gaacgggtcg gtacgcaag
//
LOCUS       DATIHC010000198         2576 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5374, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000198 DATIHC010000000
VERSION     DATIHC010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2576
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5374"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..765
                     /locus_tag="VLF16_03180"
     CDS             <1..765
                     /locus_tag="VLF16_03180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008005919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSX69912.1"
                     /translation="EPQHAGRVDPFEGRETVGIEVRGLSFSYRDDTVLHGLDLSIAPG
                     EKVALVGASGGGKSTLVQLLLGLYTAQAGTIRFGGASLEEIGLERVREHVAVVLQHPA
                     LFNDTVRANLCMGRERSDEACWQALEIAQLATTIRALPEGLDSMVGRSGVRLSGGQRQ
                     RLAIARMVLAEPKVVILDEATSALDAATEYALHEALGRFLSGRTTLIVAHRLSAVKQA
                     DRVLVFDGGSIAEDGDHQQLIAEGGLYAKLYGHLQH"
     gene            complement(907..1518)
                     /locus_tag="VLF16_03185"
     CDS             complement(907..1518)
                     /locus_tag="VLF16_03185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69913.1"
                     /translation="MSDDSETPISDGLTEQQRLEQLEKAGRLNRMLIFGLAGALVLNL
                     VAWVLVAIFGGSDTPEGEEQPSAASMASVEALQKEIGALQLQIAPLQQQVKDQQRLIL
                     LQAQQQVVPPTEAEAPEVNPAPREQDRENVRMVSRTLIGQEHNYQQTLNALKEGMREL
                     AAMTPGSRSWLDFYVESLAKPMADSQARVKALQAWESKNAAAQ"
     gene            complement(1635..>2576)
                     /locus_tag="VLF16_03190"
     CDS             complement(1635..>2576)
                     /locus_tag="VLF16_03190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005755763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HSX69914.1"
                     /translation="ALRYMVSGVMLPMDELVITTGAMEALNLCLQVVTEPGDLVAIES
                     PAFYATLQVLERLKLKAVEIPVHPREGIDLGVLAERLEHLPIKACWFMSSLQNPMGAS
                     LSEAKKIELYALLKRHQVPLIEDDVYAELHYGPQPPKPVKSFDDDGLVMHCGSFSKSL
                     APGYRVGWVAGGRYADQVARLKLMTTISPSVPAQAAIADYLQHGGYDRHLRKLRIALE
                     TQQAAMLASAARHFPAETRVTRPNGGYFLWFEFPERVDSLQLFQLALAQGISLAPGPI
                     FSATRGFRSCARLNHGHAWDAQSERAMEVLGRILASF"
BASE COUNT          365 a          870 c          903 g          438 t
ORIGIN      
        1 gagccgcagc acgcgggccg cgtcgacccc ttcgagggcc gtgagacggt cggcatcgag
       61 gtgcgcggcc tgtccttttc ctaccgcgac gacacggtgc tgcacggtct cgacctgtcc
      121 atcgcgccgg gtgagaaggt cgccctggtc ggtgccagcg gcggcggcaa gagtaccctg
      181 gtgcagctgc tgctcggtct ctacacggcc caggccggca ccatccgctt cggcggcgcc
      241 agtctggaag agatcggcct ggagcgggtg cgcgagcatg tcgcggtggt gctgcagcat
      301 ccggcgctgt tcaacgacac ggtgcgcgcc aacctgtgca tgggccgcga acgcagcgac
      361 gaggcctgct ggcaggcgct ggaaatcgct cagctggcga cgaccatccg cgcgctgccg
      421 gaagggctcg acagcatggt cggccgctcc ggcgtgcgcc tctccggcgg ccagcgccag
      481 cgcctggcga tcgcccgcat ggtgctggcc gaacccaagg tggtgatcct cgacgaagcc
      541 acttcggccc tcgacgccgc caccgaatac gccctgcacg aggccctggg tcgcttcctc
      601 agcggccgca ccacgctgat cgtcgctcat cgcctttccg cggtgaagca ggccgaccgg
      661 gtgctggtgt tcgacggcgg cagcatcgcc gaggacggcg accaccagca gctgatcgcc
      721 gagggtgggc tgtacgccaa gctgtacggg catctgcagc attgatcggc gcccgttggg
      781 gcgcgcgttg ggttggtgat gtaaaggggt gggcgtgggg cggtgcgcat ggcgcaccct
      841 acggctgtag ggcaccgtgt gcgcctcggt gatttgttaa gaccgcttgc ctggcggcgc
      901 cgagcgctac tgcgccgccg cgttcttgct ctcccacgcc tgcagcgcct tgacccgcgc
      961 ctggctgtcg gccatcggct tggccaggga ttcgacatag aagtccagcc agctgcgcga
     1021 gcccggggtc atggcggcca gctcgcgcat gccttccttg agcgcgttga gcgtctgctg
     1081 gtagttgtgc tcctggccga tcagggtgcg cgacaccatg cgcacgttct cccggtcctg
     1141 ctcgcgcggc gccgggttca cctccggggc ctcggcctcg gtcggcggga cgacctgctg
     1201 ctgcgcctgg agcaggatca gccgctgctg gtccttgacc tgctgctgca gcggggcgat
     1261 ctgcaattgc agcgcgccga tttccttttg cagcgcctcg acgctggcca tgctggcggc
     1321 gctcggctgc tcctcgcctt cgggcgtgtc cgagccgccg aagatggcga ccagcaccca
     1381 ggcgaccagg ttcagcacca gcgcgccggc caggccgaag atcagcatgc ggttgagccg
     1441 gccggccttt tccagctgct caaggcgctg ctgttcggtg agcccatcgc tgatgggcgt
     1501 ttcgctgtcg tcgctcatga tcgtctgtcc ttgctctggc atggcatgtt gccattatgg
     1561 tcggcgagtc gctggctgcc tactggcagc atagacagcg cgctccagcg gccgtcgcag
     1621 gcaacggcgg cgcgctagaa cgaggcgaga atgcgcccga gcacttccat cgccctctcg
     1681 ctttgggcat cccaggcgtg cccatggttc agcctggcgc aactgcggaa gccgcgggtg
     1741 gcggagaaga tcggccccgg cgccaggctg atgccctggg cgagggcgag ctggaacagc
     1801 tgcagcgagt cgacccgttc ggggaattcg aaccacagga agtagccacc gttgggccgg
     1861 gtgacccgcg tctcggccgg gaaatgccgg gcggcggagg cgagcatcgc cgcctgctgg
     1921 gtctccaggg cgatgcgcag cttgcgcagg tgacggtcgt agccgccgtg ctgcaggtag
     1981 tcggcgatgg cggcctgggc cggcaccgac ggcgaaatgg tggtcatcag cttgagccgg
     2041 gcgacctggt cggcatagcg cccgccagcc acccagccca cccgatagcc cggcgccagg
     2101 ctcttggaga aggagccgca gtgcatcacc aggccgtcgt cgtcgaagct cttcaccggc
     2161 ttgggcggct gcggcccgta gtgcagctcg gcgtacacgt cgtcctcgat cagcggcacc
     2221 tggtggcgct tgagcagggc atacagctcg atcttcttcg cctcgctgag gctcgcgccc
     2281 atggggttct gcaggctgct catgaaccag caggccttga tcggcaggtg ctccaggcgc
     2341 tcggccagca cgccgaggtc gatgccctcg cgcgggtgca cgggaatctc caccgccttg
     2401 agcttgaggc gctcgagcac ctgcagcgtg gcgtagaagg ccggcgactc gatggccacc
     2461 aggtcgcccg gttcggtcac cacctgcagg cagaggttca gagcctccat cgcaccggtg
     2521 gtgatcacca gttcgtccat cggcagcatc accccgctga ccatgtagcg cagggc
//
LOCUS       DATIHC010000199         1725 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28572, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000199 DATIHC010000000
VERSION     DATIHC010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1725
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28572"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1725)
                     /locus_tag="VLF16_03195"
     CDS             complement(<1..>1725)
                     /locus_tag="VLF16_03195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HSX69915.1"
                     /translation="QASIELIFDNSDGSLVGEYAAFAEISIRRRVTRDSQNTYFLNGT
                     KCRRRDITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRR
                     ETESRIRRTQENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLKAQLAALK
                     WQALNEQVGAREKVIGDQEVAFEALVAEQRSADASIERLRDGHHELSERFNQVQGRFY
                     SVGGDIARVEQSIQHGQQRLRQLQDDLNEAERARLETESHLGHDRTLLATLGEELDML
                     APEQELTAAAAEESAASLEEAESAMHGWQEQWEGFNQRSAEPRRQAEVQQSRIAQLEQ
                     SLERLVERQRRLADELAQLAADPEDAAILELSEQLAASELQLEELHAAEEGQAERLEQ
                     LRGELQQATQAQQQAQGELQRLNGRIASLEALQQAALNPGKGAAEWLREQQLSNRPRL
                     AEGLRVESGWELAVETVLGADLQAVLLDDFDNLNLSGFDQGDLRLIDPQRGGERIAGS
                     LLDKVEASIDLAPWLGKVRPVENLDQALAQRLQLGDGESLISRDGYWVGRHFLRVRRA
                     SEAESGVLA"
BASE COUNT          210 a          596 c          596 g          323 t
ORIGIN      
        1 ggccagcacg ccgctttctg cctcgctggc gcggcgcacc cgcaggaaat gccggccgac
       61 ccaatagccg tcccggctga tcagggactc gccgtcgccc aattgaaggc gctgggccag
      121 ggcctggtcc aggttctcca ccgggcgcac cttgcccagc cagggcgcca ggtcgatgct
      181 ggcctcgacc ttgtccagca ggctgccggc gatgcgctcg cccccgcgct gcggatcgat
      241 caggcgcaga tcgccttggt cgaagccgct caggttcagg ttgtcgaaat cgtccagcag
      301 cacggcctgc agatcggcgc ccagtaccgt ctccaccgcc agctcccagc cgctttccac
      361 gcgcaggcct tcggccaggc gcggacggtt gctcagctgc tgctcgcgca gccattcggc
      421 ggcgcccttg ccgggattca gcgcggcctg ctgcagcgcc tccagcgagg cgatgcggcc
      481 gttcaggcgc tgcaactcgc cctgggcctg ctgctgggcc tgggtggcct gctgcagctc
      541 accgcgcaac tgctcgaggc gctcggcctg gccttcctcg gcggcgtgca gctcttcgag
      601 ctgcagctcg ctggcggcca gctgttcgga gagttcgaga atcgccgcgt cttcggggtc
      661 ggcggccagt tgcgcgagtt cgtcggcgag acggcgctgg cgttcgacta ggcgctccag
      721 gctctgctcc agctgggcga tgcgcgactg ctgcacctcg gcctggcggc gcggctccgc
      781 gctgcgctgg ttgaaacctt cccactgctc ctgccagccg tgcatcgcgc tctcggcttc
      841 ttccagcgag gcagcggact cctcggcggc ggcggcggtc agctcctgct cgggcgcgag
      901 catgtccagc tcctcgccca gggtcgccag cagggtgcgg tcgtggccca ggtgggactc
      961 ggtctccaga cgcgcgcgct cggcctcgtt gaggtcgtcc tgcagctggc gcaggcgttg
     1021 ctggccgtgc tggatgctct gctcgacccg ggcgatgtcg ccgcccaccg aataaaaacg
     1081 gccctgcacc tggttgaagc gttcggacag ctcgtggtga ccgtcgcgca ggcgctcgat
     1141 gctggcgtcg gcgctgcgct gctcggccac cagggcctcg aaggccactt cctggtcgcc
     1201 gatcaccttc tcgcgggcgc cgacctgctc attcagcgcc tgccatttga gggcggcgag
     1261 ctgcgccttg agctggcgct cctcggcctt gtattcctgg tacttctcgg ccgcctgggc
     1321 ctggcgatgc aggcgttcga gctggcgctc caactcttcg cgcaggtcgg tcagacgcgc
     1381 caggttttcc tgggtgcggc gaatgcggct ctctgtctcg cggcggcgct ccttgtactt
     1441 ggagatgccg gcggcttcct cgatgaaatt ccgcagatcc tcgggcttgg cctcgatcag
     1501 cttggagatc atgccctgct cgatgatcga gtagctgcgc ggccccaggc cggtgccgag
     1561 gaagatgtcg gtgatgtcgc ggcggcggca cttggtgccg ttgaggaagt aggtgttctg
     1621 cgagtcgcgg gtcacccggc ggcggatgga gatctcggcg aaggcggcgt attcgcccac
     1681 caggctgccg tcggaattgt cgaagatcag ctcgatggag gcctg
//
LOCUS       DATIHC010000200         3141 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35693, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000200 DATIHC010000000
VERSION     DATIHC010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3141
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35693"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..192
                     /locus_tag="VLF16_03200"
     CDS             <1..192
                     /locus_tag="VLF16_03200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69916.1"
                     /translation="DMQRNLTFTAVFAALSLFFSPLTLAEESPGFVAHNEALAQQRSA
                     VVHAHSLAGQLRADEARDG"
     gene            complement(387..1436)
                     /locus_tag="VLF16_03205"
     CDS             complement(387..1436)
                     /locus_tag="VLF16_03205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020798358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkene reductase"
                     /protein_id="HSX69917.1"
                     /translation="MTTLFDPIKIGSLELPNRIIMAPLTRCRADEGRVPNALMAEYYV
                     QRASAGLILSEATSVTPMGVGYPDTPGIWSEDQVRGWLDVTRAVHANGGRIFLQLWHV
                     GRISDPLYLNGELPVAPSAIAAKGHVSLVRPMKDYVTPRALETEEIADIVEAYRHGAE
                     NAKAAGFDGVEIHGANGYLLDQFLQSSTNQRSDQYGGSVENRARLLLEVTDAAISVWG
                     ADRVGVHLAPRRDSHDMGDADPRETFGYVARELGKRGVAFICTREKQGEDSLTPFIKE
                     QFGGLVIANERFTKDQANAWLAEGKADAVAFGIPFIANPDLPARLAQDAPLNEPRPEL
                     FYAQGPVGYIDYPRL"
     gene            complement(1454..2620)
                     /locus_tag="VLF16_03210"
     CDS             complement(1454..2620)
                     /locus_tag="VLF16_03210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007161864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSX69918.1"
                     /translation="MPLPLLVLALSAFAIGTTEFVIMGLLPEVAVDLGVSIPGAGWLV
                     TGYALGVALGAPFMALVTANWPRKLALLALMGIFVLGNLLCATAADYELLMVARVVTA
                     LCHGAFFGIGSVVAASLVPENRRASAVALMFTGLTLANVLGVPLGTALGQYAGWRSTF
                     WAVTAIGILAFIGLWRVLPSNREQQPANLRAELAALRGAGLWLALSTTVLFSAAMFAL
                     FTYIAPLLGEVTGVSPRGITWTLLLIGVGLTLGNLIGGRLADWNLAAALASVLLALAI
                     LSTLMRWSSPLLIPLEINLLLWATAAFAAVPALQVNVMMFGQAAPNLVATLNIGAFNL
                     GNALGAWVGGLVIAQGLGLTAVPLAAGALAVLALIATLLNSSLGSDDAAEALLD"
     gene            complement(2675..2980)
                     /locus_tag="VLF16_03215"
     CDS             complement(2675..2980)
                     /locus_tag="VLF16_03215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003451442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HSX69919.1"
                     /translation="MSDPLDLDDIIKALAHPVRREILQWLKEPEKHFADQDHPLELGV
                     CAGKFERCGLSQSSVSAHLATLQRAGLVTCRKVGQWSFYKRNEEVIQDFLARLDQQL"
BASE COUNT          485 a          994 c         1158 g          504 t
ORIGIN      
        1 gatatgcaac gtaatctgac ttttactgcc gttttcgccg ctttatccct gtttttctcc
       61 ccgctgacgc ttgccgagga atcgcccggc tttgttgcgc acaacgaagc actggcccag
      121 cagcgtagcg ccgtcgttca cgcgcattcc ctggccgggc agctgcgcgc cgacgaggcc
      181 cgcgacggct gatccccgcg ttttcgctcc tcccgacgtc gatgcactcc tgatcggcgt
      241 ccggttccgg ccgctcgccc ccgagcggcc tttttttgcc cgctcgccga gcggctgcat
      301 atcgatgggc gtcagcgacg gtctgctcga ggtgtttcac ggtcgaaaaa aagccccgcg
      361 atgcggggct ttttcgtagg cggcggttac aggcgaggat agtcgatgta gccgaccggg
      421 ccctgggcgt agaacagctc ggggcgcggc tcgttgagcg gggcgtcctg ggccaggcgt
      481 gccggcagat ccgggttggc gatgaagggg atgccgaaag ccacggcgtc ggccttgccc
      541 tcggccagcc aggcgttggc ctggtccttg gtgaaacgct cgttggcgat caccaggccg
      601 ccgaactgct ccttgatgaa cggcgtcagg ctgtcttcgc cctgcttctc gcgggtgcag
      661 atgaaggcca cgccgcgctt gcccagctcg cgggccacat agccgaaagt ttcgcgcggg
      721 tcggcgtcgc ccatgtcgtg gctgtcgcgg cgcggcgcca ggtgcacgcc gacgcggtcg
      781 gcgccccata ccgagatggc ggcatcggtg acttccagca gcaggcgcgc ccggttctcc
      841 accgagccgc cgtactggtc gctgcgctgg ttggtgctgc tctgcaggaa ctggtcgagc
      901 aggtagccgt tggcgccgtg gatctccacg ccgtcgaagc cggcggcctt ggcgttctcg
      961 gcgccgtggc ggtaggcctc gacgatgtcg gcgatctcct cggtctccag ggcgcgcggg
     1021 gtgacgtagt ccttcattgg tcgcaccagg ctgacgtggc ccttggcggc gatggcgctc
     1081 ggcgccaccg gcagctcgcc gttcaggtac agcgggtcgg agatgcggcc gacgtgccac
     1141 agctgcagga agatgcgccc gccattggcg tgcaccgcgc gggtcacgtc gagccagcca
     1201 cgcacctggt cctcggacca gatgccgggg gtgtccgggt agcccacgcc catcggcgtc
     1261 accgaggtgg cctcgctgag gatcaggccg gcgctggcgc gctgcacgta gtactcggcc
     1321 atcagcgcgt tgggcacgcg gccctcgtcg gcgcggcagc gggtcagcgg cgccatgatg
     1381 atgcggttgg gcagttccag gctgccgatc ttaatcgggt cgaacagggt ggtcatgggg
     1441 cgatctcctt gggtcagtcg agcagcgcct cggcggcgtc atcgctgccg agggaggaat
     1501 tgagcagggt ggcaatcagc gccagcacgg ccagcgcacc ggccgccagc ggcaccgcgg
     1561 tgaggcccag gccctgggcg atgaccaggc caccgaccca ggcgccgagg gcgttgccca
     1621 ggttgaaggc gccgatgttg agggtggcca ccagattcgg tgcggcctgg ccgaacatca
     1681 tcacgttgac ctgcagcgcc ggcacggcgg cgaaggcggc cgtggcccag agcagcagat
     1741 tgatctccag cgggatcagc agcgggctgc tccagcgcat cagggtggag aggatcgcca
     1801 gggccagcag cacgctggcc agcgcggcgg ccaggttcca gtcggccagg cggccgccga
     1861 tcaggttgcc gagggtgaga ccgacgccga tcagcagcag ggtccaggtg atgccgcgcg
     1921 gcgacacgcc ggtgacctcg ccgagcagcg gggcgatgta ggtgaacagg gcgaacatgg
     1981 cggcggagaa cagcacggtg gtggacagcg ccagccacag cccggcgccg cgcagggcgg
     2041 ccagctcggc gcgcaggttg gcgggctgtt gctcgcggtt gctgggcagc acgcgccaca
     2101 ggccgataaa ggcgaggatg ccgatggcgg tcaccgccca gaaggtcgag cgccagccgg
     2161 cgtactggcc gagcgcggtg cccagcggca cgccgagtac gttggccagg gtcaggccag
     2221 tgaacatcag ggccacggcc gaggcccggc ggttctccgg caccaggctg gcggccacca
     2281 ctgagccgat gccgaagaag gcgccgtggc agagcgcggt gaccacgcgg gcgaccatca
     2341 gcagttcgta gtcggcggcg gtggcgcaga gcaggttgcc cagcacgaag atgcccatca
     2401 gcgcgagcag ggccagcttg cgtggccagt tggcggtgac cagggccatg aacggtgcgc
     2461 cgagggccac gcccagggcg tagccggtga ccagccagcc ggcgccgggg atggacacgc
     2521 cgaggtcgac ggcgacctcg ggcagcaggc ccatgatgac gaattccgtg gtgccgatgg
     2581 cgaacgcgga caaggcgagg acgagaagcg gtaacggcat gggccggctc ctgaagcgaa
     2641 tcgatagtga agagcccggc tggcgggcgc gggttcagag ttgttggtcg aggcgtgcga
     2701 ggaagtcctg aatcacttcc tcgttgcgct tgtagaagct ccactggccg accttgcggc
     2761 aggtcaccag gccggcgcgc tgcagcgtgg ccaggtgcgc cgagacgctc gactgggaca
     2821 ggccgcaccg ctcgaacttg ccggcgcaga cgcccagctc cagggggtgg tcctgatcgg
     2881 cgaagtgctt ttccggctcc ttgagccatt gcaggatctc ccgccgcacg gggtgggcga
     2941 gggccttgat gatgtcgtcg agatcgagtg ggtcgctcat gccggtgtcg tcgcatatcg
     3001 gagtgaggcg aactttatat tggctctctc cgatatgtag atcgctttgg gccgatattg
     3061 attatcgacg cggatgatgc gggaggatgc gcccgtgcga atgcgcgcgg gttcgtttca
     3121 ggccagatcg cctcgctggc g
//
LOCUS       DATIHC010000201         2130 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_9905, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000201 DATIHC010000000
VERSION     DATIHC010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2130
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9905"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..290
                     /locus_tag="VLF16_03220"
     CDS             <1..290
                     /locus_tag="VLF16_03220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSX69920.1"
                     /translation="EYPEFWVQAPIDGQPANVGNGTHFGFVAPDKQSVHAFYDAALKA
                     GASPDGPPGPRPHYGEPYYGCFVRDLDGHKIEAAYWDMELVYELYVEPHSH"
     gene            complement(348..1079)
                     /locus_tag="VLF16_03225"
     CDS             complement(348..1079)
                     /locus_tag="VLF16_03225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004420284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HSX69921.1"
                     /translation="MLRALVLLLFSGCAWAQQAGEPLRVVTDDWPPFRMQGAGGKLEG
                     LDIDLLDELQRRTGLRFEVHRRPWARALEEMRLGQADLMTGLARTAERERYIDYLEPS
                     YHACAPRLYGAPTLAPQIRDYAQLSGLRIGYVLRSAYFEPFDSDASLLKVGVKSERQL
                     LRMQLRGRLELMIGTDCQVDFQLRDPELARQLVKLAYQPPARTDLYVGLSRANARAGE
                     RELLSRTLRQLIREGWMERAAGRYR"
     gene            1330..2064
                     /locus_tag="VLF16_03230"
     CDS             1330..2064
                     /locus_tag="VLF16_03230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015475476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HSX69922.1"
                     /translation="MRRTLIPALLAWLCCAGAFAQNAEPTVSVGYYEFPPYSWTGADG
                     QPRGSILVLTERLLRHAGYRGEYRSLPGARLYAALRDGSVQLWPGAGGKTELAGHTYE
                     ARHAMGEFALALYHRTDTPPPRIPEGLMGRGVIVISGYSYWKPVNDLLHDPALQIGLH
                     RTSTHASALEMLLRRRGDYLLDYQAPVEQVRKELGLSPLPFTVLQRMQLRLIASRHAQ
                     GGQQLLDDLDRAYEELRAAGEELRLD"
BASE COUNT          337 a          759 c          723 g          311 t
ORIGIN      
        1 gcgagtatcc ggagttctgg gtgcaggcgc cgatcgatgg ccagccggcg aacgtcggca
       61 acggcaccca cttcgggttc gtcgcgccgg acaagcagtc cgtgcacgct ttctacgacg
      121 cggcgctgaa ggccggtgcc agcccggacg gcccacccgg cccgcgcccg cactatggcg
      181 agccctacta cggctgcttc gtgcgcgacc tggacgggca caagatcgag gcggcgtact
      241 gggacatgga gctggtctac gagctctatg tcgagccgca cagccactga cccgaagacg
      301 caaggcgtgc tcgcccgaag ggcagcaagc cagcccgcac gacgccctca gcgatagcgc
      361 ccggccgccc gctccatcca gccctcccga atgagctgcc gcaacgtgcg ggacagcagt
      421 tcgcgctccc cggcccgggc gttggcgcgg gacaggccga catagagatc ggtccgcgcc
      481 ggcggctggt aggccagctt gaccagctgc cgcgccagct ccgggtcgcg tagctggaag
      541 tccacctggc agtcggtgcc gatcatcagt tcgaggcgcc cgcgcagctg catgcgcagc
      601 agctgacgct cgctcttcac gccgaccttg agtagggagg cgtcggaatc gaaaggctcg
      661 aagtacgccg acctcagcac atagccgatg cgcaggccgc tcagctgggc gtagtcgcgg
      721 atctgcggcg cgagggtcgg cgccccgtac aggcgtgggg cgcaggcgtg gtagctgggc
      781 tcgaggtaat cgatgtagcg ctcgcgctcg gcggtgcgcg ccaggccggt catcaggtcc
      841 gcctggccga gccgcatttc ctccagcgct cgcgcccagg gccgccggtg cacctcgaag
      901 cgcagcccgg tgcggcgctg cagctcgtcg agcaggtcga tgtccagtcc ctcgagcttg
      961 ccgccggcgc cctgcatgcg gaacggcggc cagtcgtcgg taaccacgcg cagcggctcg
     1021 ccagcctgct gcgcccaggc acagccgctg aacaacagga ggacgagcgc gcgcagcatg
     1081 gtctcagtga accggctggc gcgagcgcaa ggcgcactcg aatggcaaga cgaatggctg
     1141 gcgatacata ggttctccca gtgctgcgcc gcatggtaac ccaggcggtt gccgctgcgc
     1201 ttggccgcgt gcgcagggcg tgacggcggg ctccgcgagc gcgctttcac gcgctggaca
     1261 aagccggcgc ctgccgccat gctcgggtca gaacgaacaa caagacggcc atgagccgcg
     1321 cggtagccga tgcgccgaac ccttattcct gctctgctgg catggctctg ctgtgccggc
     1381 gccttcgccc agaacgccga gccgaccgtc agcgtcggtt actacgaatt tccgccctat
     1441 tcctggaccg gcgccgacgg ccaaccgcgc ggctccatcc tggtcctgac cgaacgtctt
     1501 ctgcgccatg ccggctaccg cggcgaatac cgctcgctgc ccggcgcgcg cctgtacgcg
     1561 gcgctgcgtg acggcagcgt gcagctgtgg cccggcgccg gcggcaagac cgagctggcc
     1621 ggtcatacct acgaggcgcg tcatgccatg ggcgagttcg ccctggccct ctaccaccgc
     1681 accgacaccc ctccgccgcg gattcccgag ggcctgatgg ggcgcggggt gatcgtcatc
     1741 agcggctaca gctactggaa gccggtcaac gacctgctgc acgacccggc cctgcagatc
     1801 ggcctgcacc gcaccagcac ccatgcctcg gcgctggaga tgctgctgcg caggcgcggc
     1861 gactacctgc tcgactacca ggctccggtg gagcaggtgc gcaaggagct cggcctgtcg
     1921 ccgctgccgt tcaccgtgct gcagcgcatg cagctgcgcc tgatcgcctc gcgccatgcg
     1981 caaggcggcc agcagctgct ggacgacctc gaccgcgcct acgaggagct ccgggcggcc
     2041 ggagaggagc tgcggctgga ctaatgtcgt cgcgacggcg acgtcatcgc gccccgattg
     2101 cagattggca ttagcacacc tgtgctaatc
//
LOCUS       DATIHC010000202         1853 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_9915, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000202 DATIHC010000000
VERSION     DATIHC010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1853
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9915"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            10..795
                     /gene="fliH"
                     /locus_tag="VLF16_03235"
     CDS             10..795
                     /gene="fliH"
                     /locus_tag="VLF16_03235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HSX69923.1"
                     /translation="MAPKDAQSELIRAKDVAGFDRWSLPSFDPEVEAAPAPAPEPEPQ
                     PAAAEPEPQVEEVAVEDVKPLTLDEVEAIRQDAYNEGFATGEKDGFHAGQLKAKQEAE
                     AALAGKVAQLEQIMGHLMEPIASQDQELEKALVGLVSQVTRQVIQRELTTDSSQIRHV
                     LREALKLLPMGASNVRIHIHPQDFELVKALRERHEESWRILEDDSMHPGGCRVESENS
                     RIDASIETRIGLALKQLFDQQRAQVGNPPEADIRVDLDSPDAS"
     gene            785..>1853
                     /locus_tag="VLF16_03240"
     CDS             785..>1853
                     /locus_tag="VLF16_03240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030257 - type III protein secretion
                     system complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0046034 - ATP metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FliI/YscN family ATPase"
                     /protein_id="HSX69924.1"
                     /translation="MRLERVSFARRLAGYADAVALPGQPVVEGRLLRMVGLTLEAEGL
                     RAALGSRCLVINDDSYHPVQVEAEVMGFSTGKIYLMPVGSLSGIAPGARVVPLPDTGR
                     LPMGMSMLGRVLDGAGRALDGKGGMKAEDWVPMDGPTINPLNRDPIHVPLDVGIRAIN
                     GLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAEIIVVGLIGERGREVKEFIDEILG
                     EEGLKRSVVVASPADDAPLMRLRAAQYCTRIAEYFRDKGKNVLLLMDSLTRYAQAQRE
                     IALAIGEPPATKGYPPSVFARLPKLVERAGNAEEGGGSITAFYTVLSEGDDQQDPIAD
                     AARGVLDGHFVLSRRLAEEGHY"
BASE COUNT          310 a          625 c          654 g          264 t
ORIGIN      
        1 caggccctga tggcgcccaa ggatgcacag agcgaactaa ttcgcgccaa ggacgtggcg
       61 ggcttcgacc gttggtcgct gcccagtttc gacccggagg tcgaggccgc tcctgcgccg
      121 gcgccggaac ccgagccgca accggcggcc gccgagcccg aacctcaggt ggaagaggtg
      181 gcggtcgagg acgtcaagcc gctgaccctc gacgaggtcg aggccattcg ccaggacgcc
      241 tacaacgaag gcttcgccac cggcgagaag gatggcttcc acgccggcca gctgaaggcc
      301 aagcaggagg ccgaagcggc gttggccggc aaagtggcgc agctggaaca gatcatgggc
      361 cacctcatgg agcccatcgc cagccaggac caggaactgg aaaaggcgct ggtcggcctg
      421 gtcagccagg tgacccgcca ggtgatccag cgcgagctga ccacagactc cagccagatt
      481 cgccacgtgc tgcgtgaggc cctcaagctg ctgccgatgg gcgctagcaa tgtgcgcatc
      541 cacatccatc cgcaggattt cgagctggtc aaggcgctgc gcgagcggca cgaggagagc
      601 tggcgcatcc tcgaagacga ttccatgcac ccgggcggct gccgggtgga gagcgagaac
      661 agccgcatcg acgccagcat cgagacgcgc atcggcctgg cgctcaagca actgttcgat
      721 caacagcgcg cgcaggtcgg caatccgccg gaggcggaca tccgcgtgga tctggattct
      781 cccgatgcgt cttgagcgtg tcagcttcgc caggcgcctg gcgggctacg ccgacgccgt
      841 cgcgctgccc ggccagccgg tggtggaggg gcgcctgctg cgcatggtcg gcctgaccct
      901 ggaggcggaa ggcctgcgcg ccgccctggg cagccgttgc ctggtgatca acgacgacag
      961 ctatcacccg gtgcaggtgg aggccgaggt gatgggtttc tccaccggca agatctacct
     1021 gatgccggtc ggcagcctgt ccggcatcgc cccgggcgcc cgcgtggtgc cgctgccgga
     1081 caccggccgc ctgccgatgg gcatgtccat gctcggccgg gtgctggatg gcgccggccg
     1141 cgcgctggac ggcaagggcg ggatgaaggc cgaggactgg gtgccgatgg acggcccgac
     1201 catcaacccg ctcaaccgcg acccgattca tgtaccgctg gacgtgggca tccgcgccat
     1261 taacggcctg ctcaccgtcg gccgcggcca gcgtctgggc ctgttcgccg gtaccggcgt
     1321 gggcaagtcg gtgctgctgg gcatgatgac ccgcttcacc gaggccgaga tcatcgtggt
     1381 cggcctgatc ggcgagcgcg gccgcgaggt gaaggaattc atcgacgaga ttctcggcga
     1441 agagggtctc aagcgttccg tggtggtcgc ctcgccagcg gacgacgcgc cgctgatgcg
     1501 cctgcgcgcg gcgcagtact gcacccgcat cgccgaatat ttccgcgaca agggcaagaa
     1561 cgtcctgctg ctgatggact cgctgacccg ctacgcccag gcccagcgcg agatcgccct
     1621 ggccatcggc gagccgccgg ccaccaaggg ctacccgccg tcggtgttcg cccggctgcc
     1681 gaagctggtg gagcgtgccg gcaacgcgga ggagggcggt ggctcgatca cggcgttcta
     1741 caccgtgctg tccgagggcg acgaccagca ggacccgatc gccgacgccg cccgcggcgt
     1801 gctcgacggc cacttcgtgc tgtcgcgccg gctcgccgaa gagggccatt acc
//
LOCUS       DATIHC010000203         1974 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33272, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000203 DATIHC010000000
VERSION     DATIHC010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1974
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33272"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..245)
                     /locus_tag="VLF16_03245"
     CDS             complement(<1..245)
                     /locus_tag="VLF16_03245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003382490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase N-terminal
                     domain-containing protein"
                     /protein_id="HSX69925.1"
                     /translation="MMTESKRPRIGIVGTGAIGGFYGLMLARVGHDVHFLLRSEYRAV
                     AERGLQLNSAVHGELALQPVQAWHCVADMPKCDWLLVG"
     gene            complement(242..595)
                     /locus_tag="VLF16_03250"
     CDS             complement(242..595)
                     /locus_tag="VLF16_03250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008040527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HSX69926.1"
                     /translation="MQGPSIVPDLELTDFDADHRLLAMAGSTLLIFVSAGCASCRWAG
                     RELPGMDLPVDRLCWVDAGENGGLVQRYEVFRLPSLFLVRDGQYFGALSSALLATELS
                     VAIRQALEREPEELP"
     gene            629..1048
                     /locus_tag="VLF16_03255"
     CDS             629..1048
                     /locus_tag="VLF16_03255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009050134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HSX69927.1"
                     /translation="MRRFLRHPSDMPIELVQRKHAFLPRQRLNNISLGGVACNSSKGF
                     RKGTAVELRIPLFGDDARYPGVVAWCRKQADQYLIGIAFIDEDTLFRARMVEQVCQIE
                     HYRHQRELELGTPLEVEAVAREWIALHAAEFPSARIH"
     gene            1169..>1974
                     /locus_tag="VLF16_03260"
     CDS             1169..>1974
                     /locus_tag="VLF16_03260"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HSX69928.1"
                     /translation="MADLPIDDLNVSSNETLITPAQLKREIPLTEAAQRTVAQGRQVV
                     RDILDGKDHRLFVVVGPCSIHDIKAAHDYAERLKVLAAEVSDTLFLVMRVYFEKPRTT
                     VGWKGLINDPYLDDSFKIQDGLHIGRRLLRDLAEMGLPTATEALDPISPQYLQDLISW
                     SAIGARTTESQTHREMASGLSSAVGFKNGTDGGLTVAINALQSVSSPHRFLGINQEGG
                     VSIVTTKGNAYGHVVLRGGNGKPNYDSVSVAICEQELAKAKISPNIMVDC"
BASE COUNT          388 a          680 c          585 g          321 t
ORIGIN      
        1 cccaccagca gccagtcgca tttcggcatg tccgcgacgc aatgccatgc ctgcaccggt
       61 tgcagggcga gctcgccatg taccgcgctg ttcagctgca ggcctcgttc agccacagcg
      121 cgatactcgc tgcgcagcag gaaatgcacg tcatgaccga cgcgagccag catcagccca
      181 taaaagccac cgatggcccc ggtgccgacg atgccgatac gtggacgttt tgattcggtc
      241 atcagggtaa ctcctcgggt tcgcgttcga gcgcctgccg gatcgccaca gacaattcgg
      301 ttgccagtag cgcggacgaa agggcgccga aatactggcc atcgcgcacc aggaacaggc
      361 tcggcagacg gaacacctca tagcgctgca ccaggccgcc gttctcgccg gcatcgaccc
      421 agcacaggcg gtcgacggga aggtccatac ccggcagctc acggcctgcc cagcgacaac
      481 tggcacagcc ggcactgacg aagatcagca gcgtgctgcc ggccatcgcc agcaaccgat
      541 ggtcggcatc gaaatcggtc agctcgagat caggcactat actggggcct tgcatgatgg
      601 caattagatg gcatccggag tagtcgcaat gcgtcgcttt cttcgtcacc ccagcgatat
      661 gccgatcgag ctggtgcaac gcaaacacgc cttcctgccg cggcagaggc tgaacaatat
      721 cagcctcggc ggcgtggctt gcaattccag caagggattt cgcaagggca ccgcggtcga
      781 gctgcgcatc ccgctgttcg gcgacgacgc gcgctacccc ggggtggtcg cctggtgccg
      841 caagcaggcc gaccagtatc tgatcggcat cgcctttatc gatgaggaca ccctgttccg
      901 ggcgcgcatg gtcgagcagg tctgccagat cgagcactac cgccatcagc gcgaactcga
      961 actgggcacg ccactggagg tggaagcggt cgcacgcgag tggatcgcac tgcacgccgc
     1021 cgaattcccg agcgcccgca tccactagat tccagccgat ctgccattgt cgaggcagcc
     1081 tcgaacgcgt taaggttccg gtcccccgct gcgcccagtg atttcgcctg aagaggcgct
     1141 cggctcccgt gacctgacga gtaccacgat ggctgattta ccgattgacg atctcaacgt
     1201 ttcgtccaat gaaaccctga tcaccccggc gcagctcaag cgcgaaatcc cccttaccga
     1261 agccgcccag cgcaccgttg cccagggccg ccaggtggtc cgcgacattc tcgacggcaa
     1321 ggatcaccgc ctgttcgtgg tggtcggccc ctgctccatc cacgacatca aggccgccca
     1381 tgactacgcc gagcgcctaa aggtgctggc cgccgaggtg tccgacacgc tgttcctggt
     1441 catgcgcgtg tacttcgaga agccgcgcac caccgtgggc tggaagggtc tgatcaacga
     1501 tccctacctg gacgactcgt tcaagatcca ggacggcctg cacatcggcc gccgcctgct
     1561 gcgcgacctg gccgagatgg gcctgccgac cgccaccgaa gcgctcgacc cgatttcgcc
     1621 gcagtacctg caggacctga tcagctggtc ggccatcggc gcccgcacca ccgaatccca
     1681 gacccaccgc gaaatggctt cgggcctctc ctcggccgtg ggcttcaaga acggcaccga
     1741 cggcggcctg accgtggcga tcaacgccct gcaatcggtg tccagcccgc atcgcttcct
     1801 cggcatcaac caggaaggcg gcgtgtcgat cgtcaccacc aagggcaacg cctacgggca
     1861 cgtggtactg cgcggcggca acggcaagcc caactacgat tcggtgagcg tcgccatctg
     1921 cgagcaggag ctggccaagg ccaagatcag cccgaacatc atggtcgact gcag
//
LOCUS       DATIHC010000204         2431 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_9926, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000204 DATIHC010000000
VERSION     DATIHC010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2431)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2431)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2431
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9926"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(41..940)
                     /gene="cysD"
                     /locus_tag="VLF16_03265"
     CDS             complement(41..940)
                     /gene="cysD"
                     /locus_tag="VLF16_03265"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007997431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004781 - sulfate adenylyltransferase
                     (ATP) activity [Evidence IEA];
                     GO_process: GO:0019419 - sulfate reduction [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HSX69929.1"
                     /translation="MPLTHLERLEAESIDIFREAVSEAENPVMLYSIGKDSAVMLHLA
                     RKAFFPSRPPFPLLHVDTTWKFRAMYEMRERMARESGMELLIHRNQDALERGINPFTH
                     GSALHTDLWKTVGLKQALDQHGFDLAFGGARRDEEKSRAKERVFSFRSAQHRWEPKAQ
                     RPELWRLYNARKLPGESIRAFPLSNWTELDIWQYIHLENIPIVPLYLAEKRPVVERDG
                     VLIMVDDERMPLRPGEQPQLKSVRFRTLGCYPLTGAVESEADSLPAIIREMLLATTSE
                     RQGRIIDHDSAGSMEKKKVEGYF"
     gene            complement(1066..1962)
                     /locus_tag="VLF16_03270"
     CDS             complement(1066..1962)
                     /locus_tag="VLF16_03270"
                     /inference="COORDINATES: protein motif:HMM:NF021982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHB depolymerase family esterase"
                     /protein_id="HSX69930.1"
                     /translation="MRLITLLAPCLALIAAHALAAEGRLHQLEAGGEERSYKLYVPEG
                     APEGPLPLMIVMHGGLGNADETERTTGMNRIAQANGFLVAYPNGTGARMMPNRRTWNA
                     GKCCGRAAELNVNDVGFIHAMLADIGSHHPVDRSRVYATGISNGAMMAYRLACELPDD
                     IAAIVPVSGTLAVNSCPGARNIPVLHIHGGKDSNVPYQGGMGENAISGVAHRSVPETL
                     KMIASAHGCGAAPNEKGLADGSELTSWNCQGKAPLQLRLIPNGEHVWPGGDSRRNRKL
                     FGGDFSASQAAWDFVKQFKKNN"
     gene            complement(1974..2360)
                     /locus_tag="VLF16_03275"
     CDS             complement(1974..2360)
                     /locus_tag="VLF16_03275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69931.1"
                     /translation="MPTRNRLGNISTPSDMLPELPPHLQVLRDDLQKRVQASRVRHYL
                     DRELSHLSGNREIAASVRLLFDGQGRPSENLSLKEIVRFRQKIETDIQWLEAVLTELR
                     SDLAVVRELEDAALDVADIQRTEENC"
BASE COUNT          339 a          756 c          860 g          476 t
ORIGIN      
        1 tgttcgatat cgtcttcgat gagatgggtg tgggcgttca tcagaagtac ccctcgactt
       61 tcttcttttc catggagccg gcgctgtcgt ggtcgatgat tcggccctgg cgttcgctgg
      121 tggtggccag cagcatctcg cggatgatcg ccggcaggct gtcggcctcg gactccaccg
      181 cgccggtcag cggatagcag cccagggtgc gaaaacgcac gctcttcagc tgcggctgct
      241 cgccggggcg cagcggcatg cgttcgtcgt cgaccatgat cagcacgccg tcgcgctcca
      301 ccaccgggcg cttctcggcg aggtacagcg gcacgatggg gatgttctcg aggtggatgt
      361 actgccagat gtccagctcg gtccagttcg acagggggaa ggcgcggatg ctctcgccgg
      421 gcagcttgcg tgcgttgtac aggcgccaca gctccgggcg ctgagccttg ggctcccagc
      481 ggtgctgggc gctgcggaag gagaacacgc gctccttggc ccgcgatttt tcctcgtcgc
      541 ggcgcgcgcc gccgaaggcc aggtcgaagc cgtgctggtc cagggcctgc ttcaggccga
      601 cggtcttcca caggtcggtg tgcagtgccg agccgtgggt gaagggattg atgccgcgct
      661 ccagcgcatc ctggttgcga tggatcagca gctccatgcc ggactcgcgc gccatgcgct
      721 cgcgcatctc gtacatggcg cggaatttcc aggtggtgtc cacatgcagc agcgggaagg
      781 gcggacgcga ggggaagaac gccttgcgcg ccagatgcag catcaccgcg ctgtccttgc
      841 cgatggagta gagcatcacc gggttttccg cctcggaaac cgcttcgcgg aaaatatcga
      901 tgctctccgc ttccaggcgc tctagatggg tgaggggcat ttcggttcgc ctcgtgatga
      961 cgggtgctgc tggctgatgg gtgcagttta ccggccgccc cgcgggggcg acagggctgc
     1021 ggcgtgtggg cagttgagtg ggcggtcttc gccgccctgg caggctcagt tgttcttctt
     1081 gaactgcttg acgaagtccc aggcggcctg gctggcggag aagtcgccgc cgaacagctt
     1141 acggttgcgt cggctgtcgc cgcccggcca gacgtgctcg ccgttaggga tcaggcgaag
     1201 ctgcagcggc gccttgccct ggcagttcca gctggtgagc tccgagccgt cggccaggcc
     1261 cttttcgttc ggggcggcgc cgcagccatg ggcgctggcg atcatcttca gggtctcggg
     1321 caccgagcgg tgggccacgc cggaaatcgc gttctcgccc atgccaccct ggtaggggac
     1381 gttgctgtcc ttgccgccgt ggatgtgcag taccgggatg tttctcgccc cgggacagct
     1441 gttcaccgcc agggtgccgg acaccggcac gatggcggcg atgtcgtcgg gcagctcgca
     1501 ggccagacga taggccatca tggcgccgtt ggagatgccg gtggcgtaga cccgcgaacg
     1561 gtctacgggg tgatggctgc cgatgtcggc cagcatggcg tggatgaagc ctacgtcgtt
     1621 tacgttgagc tccgctgctc tgccgcagca cttgccggca ttccaggtac gccggttcgg
     1681 catcatccgc gcgccggtgc cattggggta ggccaccaga aaaccgttgg cctgggcgat
     1741 gcggttcatg ccggtggtgc gctcggtctc gtcggcgttg cccaggcctc cgtgcatgac
     1801 gatcatcagc ggcagagggc cctcgggcgc gccctcgggg acatacagct tgtagctgcg
     1861 ctcctcgccg ccggcctcga gctgatgtaa gcggccttct gcggcgagtg catgggccgc
     1921 gatcagcgcg aggcaggggg cgagcagagt gatcaggcgc atggtgcgtc tccctagcag
     1981 ttctcttcgg ttcgctggat gtccgccacg tccagggccg cgtcttccag ttcgcggacc
     2041 acggccagat cgctgcgcag ctcggtcagt accgcctcca gccactggat atcggtctcg
     2101 atcttctgcc ggaacctgac gatttccttg aggctgaggt tttccgaggg gcgcccctgg
     2161 ccgtcgaaca gcaggcgcac gctggcggcg atctcgcggt tgccgctgag gtgcgacagt
     2221 tcgcggtcca ggtaatggcg cacgcggctg gcctgcacgc gcttctgcag gtcgtcgcgc
     2281 agcacctgca gatgcggcgg tagttccggg agcatgtcgc tcggcgtgct gatgttgccc
     2341 aggcggttgc gtgtcggcat ggctcgtctc gctcagtggg agtagccgaa ctccagcgcc
     2401 atgcgctgga cctcgggttt caggcaggcg c
//
LOCUS       DATIHC010000205         1870 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_40323, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000205 DATIHC010000000
VERSION     DATIHC010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1870)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1870
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40323"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            494..1009
                     /locus_tag="VLF16_03280"
     CDS             494..1009
                     /locus_tag="VLF16_03280"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSX69932.1"
                     /translation="MPIQIASAALSALPDLDRSFSVTEELQLHFTDGQLGYRVVPVEP
                     YEKTYPDDGEEPLDESEAFLATLDGQPAGVIQLSMAWNGYARIDDIAVDRRLRRSGVA
                     TALLEHACDWCRERALAGLMLETQTNNVAACRLYERFGFRLGGFDRELYRGLAPGTRE
                     VALFWYLPLSR"
     gene            complement(999..1856)
                     /locus_tag="VLF16_03285"
     CDS             complement(999..1856)
                     /locus_tag="VLF16_03285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012699761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSX69933.1"
                     /translation="MIEKQNMPAQHQDIPHGSEAHMHPKPIYIDERYRGSGKLEGKVA
                     IISGADSGIGRAVAVHFAEEGCDIVLLYLDRDEDAKLTQAEIEKRGRQVLPLAGDVAD
                     AAFCQKVVRETIGKWGRLDILVNNAGEQQPQEGLEDIPQEQWEQTFRTNIFAMFQLTK
                     AALPHLEEGAAIINTTSITAYKGNAMLLDYSSTKGAITTFTRSLALNLVKRGIRVNAV
                     APGPIWTPLIVSTFPADKVAGFGSDTPMQRPGQPSEVAPAFVYLASNDSSYVSGQVLH
                     VNGGTVVNG"
BASE COUNT          296 a          569 c          636 g          369 t
ORIGIN      
        1 gctgctgccg ctgctggtcg ccgtggtggt ctacctggtg ctggaaaaac gcgcgaagaa
       61 actgcgccag aagtccgaac aggccggccg actgaagacc gagggggcgt gactcccggc
      121 gcgcatggtg ggctttgtgt ataacgtcct cgtgagatgc aacaccatcg atgggtgcag
      181 gcgtacgagg gcgtgcatga agatcttagg gttgatactc gcaatttcgg tcttgtgcgt
      241 tcctctcgcc attgcagcca cggtgttatg cgcacctttc tgggaatggt tcgaggccgc
      301 gacctctgtg caggcatacg gacaccacgg ccctatcgag tggtgttacc tggtgaccta
      361 cggcgtactg ctagcggccg cgtgcggatg ggtactaaga atgagaggca gaggctgacc
      421 tagacgtgtt ccctcacttc gccagacagc actggctcgg tggacggttc ccccagctct
      481 cggctaatcg cttatgccca tccagatcgc cagcgccgcc ttgtccgcac tccccgacct
      541 cgaccgcagc ttcagcgtca cggaagagct gcaattgcac ttcaccgatg gccagttagg
      601 ctatcgggtc gtgccggtcg agccttacga aaagacctat cccgatgacg gcgaagagcc
      661 gctcgacgag agcgaagcat ttctagccac gctggacggc caaccggccg gggtcattca
      721 gctgtcgatg gcctggaatg gttacgcgcg gatcgacgat atcgccgtcg accgcaggct
      781 acgccgctcc ggcgtggcga cggcgctgct ggagcacgcc tgtgactggt gccgggagcg
      841 agcgctggcg ggactgatgc tggagacgca gaccaacaac gtcgcggcat gccggctcta
      901 tgagcgtttc ggctttcgcc tgggcgggtt cgaccgcgag ctgtatcgcg gtctcgcccc
      961 agggacccgg gaggtcgccc tgttctggta tctgccgctc agccgttgac cacggtgccg
     1021 ccgttgacgt gcagcacctg gccactgaca tagctcgagt cgttgctggc caggtagacg
     1081 aaggccgggg cgacttcgga cggctggccg gggcgctgca tgggggtgtc cgagccgaag
     1141 ccggcgacct tgtccgccgg gaaggtggag acgatcagcg gcgtccagat cgggcccggg
     1201 gccacggcgt taacgcggat gccgcgtttg accaggttca gtgccaggga acgggtgaag
     1261 gtggtgatgg cgcccttggt ggacgagtag tccagcagca tggcgttgcc cttgtaggcg
     1321 gtgatcgagg tggtattgat gatcgccgcg ccctcctcca ggtgcggcag cgccgccttg
     1381 gtcagctgga acatggcgaa gatgttggtg cggaaggtct gctcccactg ctcctgcgga
     1441 atgtcctcga ggccttcctg cggctgctgt tcaccggcgt tgttgaccag gatgtcgagg
     1501 cgcccccact tgccgatggt ctcgcgaacc accttctggc agaacgcggc atcggccacg
     1561 tcgccggcca gcggcagcac ctggcggccg cgcttctcga tttccgcctg ggtcagcttg
     1621 gcgtcttcgt cgcggtcgag gtacagcagc acgatgtcgc agccttcctc ggcgaagtgc
     1681 acagccacgg cgcggccgat gccgctgtcg gcgccgctga tgatcgccac cttgccctcc
     1741 agcttgccgg agccgcggta gcgctcgtcg atgtagatcg gcttcgggtg catgtgcgcc
     1801 tcgctgccgt gggggatgtc ctggtgctgg gcgggcatgt tctgtttttc gatcatgaaa
     1861 ggttcctctc
//
LOCUS       DATIHC010000206         2101 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_44615, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000206 DATIHC010000000
VERSION     DATIHC010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44615"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2019
                     /locus_tag="VLF16_03290"
     CDS             <1..2019
                     /locus_tag="VLF16_03290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009047816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0009290 - DNA import into cell involved in
                     transformation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HSX69934.1"
                     /translation="PLDGRTLWLEGRVSGLPEAGGGVVRFQLEQASAREHRLPARLRL
                     SWYDGPPLLAGERWRLAVKLKRPRGLVNPQGFDYEAWLLAQRIGATGSVKAGERLAPA
                     SGPSAWRDGLRQRLLEVDAHGRAGGLAALVLGDDSGLSRADWRVLQDTGTVHLLVISG
                     QHVALLAALLYGLVAGLARLGLWPCALPWLPWACGLAFAGALGYGLLAGFEVPVRRAC
                     VMVALVLLWRLRFRHLGLWFPLLLAFILVLLVEPLASLQAGFWLSFGAVAVLVWVFGG
                     RLGAWPWWRIWWRAQWTLALGLLPLFFALGLPLSLSGPLANLFAVPWVSLLVVPLALL
                     GTLLLPLPWLGEALLWLAGGLLELLFQALAWLASVLPAWLPTSLPLWCWLLGSLGALL
                     CLAPAGLPGRALGLAMLLAFFLPPRERIPEGQAVVWQLDVGQGAAVLVRTRKHALLYD
                     AGPRFGDFDLGERVVLPSLRQLGVGRLDLMLLSHADSDHAGGAEAVARGMGIGRVASG
                     EASQLPSALSAEPCVDGGEWQWDGVRFRTWRWSAAQEGNQASCVLRVEAEGESLLLTG
                     DIDQRAEQALIDLGRAQRADWLQVPHHGSRSSSSATFLDAVAPRGALISRGWHNPFGH
                     PHPGVVARYRERDIELYDSAEHGAIRLLLGSGEGVSTWRERPRFWREK"
BASE COUNT          210 a          693 c          804 g          394 t
ORIGIN      
        1 cctctggatg gtcgcaccct gtggctggaa gggcgggtca gtggcctgcc cgaggccggc
       61 ggaggcgtcg tgcgtttcca gctggagcag gcgagcgccc gtgagcaccg cttgcccgcg
      121 cggctgcgcc tgtcctggta cgacggcccg ccattattgg ccggcgagcg ctggcgcctg
      181 gcggtgaagc tcaagcgccc gcgcggcctg gtcaatccac agggcttcga ctatgaggcc
      241 tggctgctgg cccagcgcat cggtgccacc ggctcggtga aggcgggtga gcggttggcg
      301 ccagcctcgg ggccaagcgc ctggcgcgac ggcttgcgcc agcgtctgct cgaggtggac
      361 gcccatggtc gtgccggcgg cctggccgcc ctggtgctgg gcgatgactc cggcctcagc
      421 cgcgccgatt ggcgggtgct gcaggatacc ggcacggtgc acctgctggt gatctccggc
      481 cagcacgtgg cgctgctggc cgcgctgctc tacggcctgg tcgccggcct ggcccggctc
      541 ggcctgtggc cgtgcgcgct gccctggttg ccctgggcct gtggcctggc cttcgccggc
      601 gcgctgggct acgggttgct ggccggcttc gaggtgccgg tgcgccgtgc ctgcgtgatg
      661 gtcgcgctgg tgttgctgtg gcgcctgcgc tttcgccatc tcggcctgtg gtttccgctg
      721 ttgctggcgt tcatcctggt gctgctggtc gagccgctgg ccagcctgca ggcgggcttc
      781 tggctgtctt tcggcgcggt ggcggtgctc gtctgggtgt tcggcgggcg gctcggcgcc
      841 tggccctggt ggcgcatctg gtggcgcgcc cagtggaccc tggcgctcgg cctgctgccg
      901 ctgttcttcg ctctgggcct gccgctcagc ctgagcggtc cgctggccaa cctgttcgcc
      961 gtgccctggg tcagcctgct ggtggtgccg ctggcattgc tcggcacgct tctattgccg
     1021 ctgccctggc tgggcgaggc gttgctgtgg ctcgccggtg gtctgttgga gctgttattc
     1081 caggcgctcg cctggctggc cagtgtgttg ccggcctggc tgcccacgtc gcttccgctc
     1141 tggtgctggc tgttgggcag cctgggcgcg ctgctgtgcc tggctccggc ggggctaccg
     1201 gggcgcgcgc tggggttggc catgttgctg gcattcttcc tgccgcctcg cgagcgaatt
     1261 ccggagggcc aagccgtggt ctggcagctg gatgtcggtc agggcgcggc agtgctggta
     1321 cgcacgcgca agcatgcgct gctgtacgac gcgggcccgc gcttcggcga cttcgacctg
     1381 ggcgagcggg tcgtgctgcc ctcactgcgc cagctgggcg tcggtcggct cgatctgatg
     1441 ctgctcagcc acgccgacag cgaccatgcc ggcggtgccg aggcggtggc ccgcggcatg
     1501 ggcatcggca gggtggcgag tggcgaggcc agccagctgc cgagcgcatt gagcgcagag
     1561 ccctgcgtcg atggcggcga atggcaatgg gacggcgtac gcttccgcac ctggcgctgg
     1621 tcggcggccc aagagggcaa ccaggcctcc tgcgtgctca gggtggaggc ggagggcgag
     1681 agtctgctgc tgaccggcga catcgaccag cgcgccgagc aggcgctgat cgacctgggc
     1741 cgagcccagc gggcggactg gttgcaggtg ccgcaccacg gcagtcgcag ttcctcgagt
     1801 gccaccttcc tcgacgccgt ggcgccgcgt ggcgccttga tctcgcgcgg ctggcacaac
     1861 cccttcggtc atccgcaccc gggagtcgtg gcgcgttatc gcgaacgcga tatcgagctg
     1921 tacgacagtg ccgagcacgg cgccatccgc ctgctgctgg gctccggcga aggcgtttcc
     1981 acctggcgcg agcgcccgcg tttctggcgg gaaaaatgag aaccgggatg gtctgcgtcg
     2041 gcgcgaccct atgctagagt ggcgccactt ttcggagggg gaatcgatac cgtgtgggag
     2101 c
//
LOCUS       DATIHC010000207         2255 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_40330, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000207 DATIHC010000000
VERSION     DATIHC010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2255)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2255)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2255
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40330"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..486)
                     /gene="ccoO"
                     /locus_tag="VLF16_03295"
     CDS             complement(<1..486)
                     /gene="ccoO"
                     /locus_tag="VLF16_03295"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HSX69935.1"
                     /translation="MAGSKHEFLEKNIGLLSLFMVIAVSIGGLTQIVPLFFQDVTNTP
                     VEGMKPRTALELEGRDIYIREGCVGCHSQMIRPFRAETERYGHYSVAGESVWDHPFLW
                     GSKRTGPDLARVGGRYSDDWHRAHLYNPRNVVPESKMPAYPWLVENKLDGKDTAAKME
                     AL"
     gene            complement(486..1928)
                     /gene="ccoN"
                     /locus_tag="VLF16_03300"
     CDS             complement(486..1928)
                     /gene="ccoN"
                     /locus_tag="VLF16_03300"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012018856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HSX69936.1"
                     /translation="MSTAISQTAYNYKVVRQFAVMTVIWGVIGMGLGVFIAAQLVWPE
                     LNLNLPWTSFGRLRPLHTNAVIFAFGGCALFATSYYVVQRTCQARLISDSLAAFTFWG
                     WQAVIVLAVITLPLGYTSSKEYAELEWPVDILLAVVWITYAAVFFGTIVKRKTKHIYV
                     GNWFFGGFILVTAMLHIVNSMEIPVTLFKSYSVYAGATDAMVQWWYGHNAVGFFLTTG
                     FLGMMYYFVPKQAERPIYSYRLSIVHFWALITLYIWAGPHHLHYTALPDWAQSLGMVM
                     SLILLAPSWGGMINGMMSLSGAWHKLRTDPILRFLVVSLAFYGMSTFEGPMMAIKTVN
                     ALSHYTDWTIGHVHAGALGWVAMISIGSLYHLIPKVFGREQMHSIGLINAHFWLATIG
                     TVLYIASMWVNGITQGLMWRAVNEDGTLTYSFVEALEASHLGFMVRALGGAFFVTGML
                     LMAYNTWRTVRAADKSKYDSAALIPAEVAH"
BASE COUNT          440 a          641 c          784 g          390 t
ORIGIN      
        1 cagagcttcc atcttggcgg cggtgtcctt gccgtcgagc ttgttctcga ccagccaggg
       61 gtacgccggc atcttcgatt ccggaaccac gttgcgcggg ttgtacaggt gggcgcggtg
      121 ccagtcgtcc gagtaacggc cgccgacgcg ggccaggtct gggccggtac gcttggagcc
      181 ccacaggaac gggtggtccc agacgctctc gccggccacg gagtagtggc cgtagcgctc
      241 ggtctcggcg cggaacgggc ggatcatctg cgagtggcag ccgacgcagc cttcgcggat
      301 gtagatatca cggccttcca gctccagcgc ggtgcgcggc ttcatgcctt ccaccggggt
      361 gttggtgacg tcctggaaga acagcggcac gatctgggtc aggccaccga tgctcacggc
      421 gatcaccatg aacagcgaaa gcaggccgat gttcttctcg agaaattcgt gtttgctacc
      481 ggccatcagt gagcgacctc tgcaggaatc agggcggcgg agtcgtactt gctcttgtca
      541 gcggcacgta cggtgcgcca ggtgttgtag gccatcagca gcatgccggt gacgaagaag
      601 gcaccgccga gtgcgcgaac catgaagccg aggtggctgg cttccagggc ttcgacgaag
      661 gagtaggtga gggtgccgtc ttcgttgacc gcacgccaca tcaggccctg ggtgatgccg
      721 ttgacccaca tggaggcgat gtacagcacg gtgccgatgg tcgccagcca gaagtgggcg
      781 ttgatcaggc cgatgctgtg catctgctcg cggccgaaca ctttcgggat caggtggtac
      841 agcgagccga tggagatcat cgctacccag ccgagggcac cggcgtgtac gtggccgatg
      901 gtccagtcgg tgtagtgcga cagggcgttg acggtcttga tggccatcat cgggccttcg
      961 aaggtggaca tgccgtagaa ggcgagggag accaccagga agcgcaggat cgggtcggtg
     1021 cgcagcttat gccaggcgcc ggacaggctc atcatgccgt tgatcatgcc gccccagctc
     1081 ggcgcgagga gaatcagcga catgaccatg ccgagggact gagcccagtc cggcagggcg
     1141 gtgtagtgca ggtggtgcgg accggcccag atgtacaggg tgatcagcgc ccagaagtgc
     1201 acgatggaca ggcggtacga gtagatcggg cgctcggcct gcttcggtac gaagtaatac
     1261 atcatcccga ggaagccggt ggtcaggaag aagcccacgg cgttgtggcc gtaccaccac
     1321 tggaccatcg catcggtggc gcctgcatag accgagtagg acttgaacag ggtgaccggg
     1381 atttccatgc tgttgacgat gtgcagcatg gcggtgacca ggatgaagcc gccgaagaac
     1441 cagttgccca cgtagatgtg cttggtcttg cgcttgacga tggtaccgaa gaacacggcc
     1501 gcgtaagtga tccagacgac cgccagaagg atgtcgaccg gccactccag ctcggcgtac
     1561 tccttggagg aggtgtagcc cagcggcagg gtgatcacgg ccagcacgat cacggcttgc
     1621 caaccccaga aggtgaaggc ggccagactg tcggagatca ggcgggcctg gcaggtgcgc
     1681 tgtaccacgt aataagaggt ggcgaacagg gcgcagccgc cgaaggcgaa gatcaccgcg
     1741 ttggtgtgca gcgggcgcag acggccgaag ctggtccacg gcaggttcag gttgagttcc
     1801 ggccacacga gctgcgcggc gatgaacact ccgagaccca tcccgatgac cccccagatt
     1861 accgtcataa cggcgaactg gcggaccacc ttgtagttat aagcagtctg actgattgct
     1921 gtgctcatgc taggggtacc acggttaagg gagttttata ggctaaaaaa gcggcggcaa
     1981 gtatggagaa acgaggtatc cattgcaacg ccgcatgccg ttgcgctcgg gctttcagcg
     2041 gccttcgagg gccggggaaa tccacgttcg cgatgctctc ttgcaccggg agcgagaccg
     2101 ccggaagggg ccatcgccta gacactgtta ccggatgcga ctgttcgcca gcttagacca
     2161 actcctgtcg ccgggtgcgc aaccggtctg cgcgggtgcg acatcgggtc gcattagcgc
     2221 gagggtgcgg gcgccgggcg gcgcccgcgg gaggg
//
LOCUS       DATIHC010000208         2845 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_16593, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000208 DATIHC010000000
VERSION     DATIHC010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2845)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2845)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2845
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16593"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..466)
                     /locus_tag="VLF16_03305"
     CDS             complement(<1..466)
                     /locus_tag="VLF16_03305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HSX69937.1"
                     /translation="MPDFLLNALLAGLALALVAGPLGSFVVWRRMAYFGDTLSHAALL
                     GVALGFLLDLSPTLAVTAGCLLLAVLLVTLQQRQPLASDTLLGILAPTTLSLGLVVLS
                     FMDEVRIDLMGYLFGDLLAVGDSDLAWILGGSALVLALLLPLWRRLLAITVHE"
     gene            complement(466..1257)
                     /gene="znuC"
                     /locus_tag="VLF16_03310"
     CDS             complement(466..1257)
                     /gene="znuC"
                     /locus_tag="VLF16_03310"
                     /EC_number="7.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003241199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015633 - ABC-type zinc transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006829 - zinc ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter ATP-binding protein ZnuC"
                     /protein_id="HSX69938.1"
                     /translation="MNDALIQLDGVGVAFAGQPVLQQVQLTVRPGEIVTLIGPNGAGK
                     TTLVRAVLGLLKPDSGTVRRKTRLRIGYMPQKLHVDPTLPLSVLRFLRLVPGVDRAAA
                     HAALEEVGAGQVLDSPLQSVSGGELQRVLLARALLRQPELLVLDEPVQGVDVAGQAEL
                     YRLITQLRDRHGCGVLMVSHDLHLVMSTTDQVVCLNRHVCCSGHPEQVSNDPAFVELF
                     GQDAKSLAIYHHHHDHSHDLHGAVVESPVLTIHGPAHVHGPGCKH"
     gene            complement(1254..1754)
                     /locus_tag="VLF16_03315"
     CDS             complement(1254..1754)
                     /locus_tag="VLF16_03315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017676172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HSX69939.1"
                     /translation="MFKPYTGNTPLACLPHDHSRCVADALAEAEQICAQQGTRLTALR
                     KRVLELVWASHKPLGAYDILAVLSEEDGRRAAPPTVYRALDFLLENGLVHRIASLNAF
                     VGCVHPGQLHQGQFLICKACHTAIELELPTISEAISSGASEVGFTVENQTVEVVGLCA
                     SCREAA"
     gene            1817..2716
                     /locus_tag="VLF16_03320"
     CDS             1817..2716
                     /locus_tag="VLF16_03320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016394240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HSX69940.1"
                     /translation="MSRLFLFLAAALLSLHAQAEVKVLTSIKPLQLIAAAVQDGLGQP
                     EVLLPPGASPHHFALRPSDVRRVQNAELLYWIGPDMESFLPRVLSGRERPSVAVQALP
                     GLTLRHFGEGEHHHHEHDGEQHDHAHRPGSLDAHLWLLPANARVIAAKMAADLAAADP
                     GNAARYQANLQAFEQRLASLDGELKSRLAPLAEQPFFVFHQAFDYFESAYGLEHAGVF
                     SAASEVQPGARQVAAMRERLKAAGPACVFSEPPLRPRLAETISAGLPVQLSELDALGA
                     SAQSYEQLLRNLADGLAGCLEAL"
BASE COUNT          433 a          962 c         1036 g          414 t
ORIGIN      
        1 cctcatgcac ggtgatcgcc agcaggcgcc gccacagcgg cagcagcagg gccaggacca
       61 gggcgctgcc gccgagaatc caggccaggt cgctgtcgcc caccgccagc agatcgccga
      121 acaggtagcc catcaggtcg atgcgcacct cgtccatgaa gctcagcacg accaggccca
      181 gcgacagggt ggtcggcgcc aggatgccca gcagggtgtc cgaggccagc ggttggcgct
      241 gctgcagggt gaccagcagc acggccagca gcaggcagcc ggcggtcacc gccagggtcg
      301 ggctgaggtc gagcaggaag cccagggcca caccgagcag ggcggcgtgg gacagggtgt
      361 cgccgaagta ggccatgcgc cgccagacca cgaaggagcc gagcgggccg gcgaccagcg
      421 ccagggccag gccggcgagc aatgcgttga ggaggaaatc gggcatcagt gcttgcatcc
      481 cggaccgtgc acatgggccg gaccgtggat ggtcaggacg ggcgactcga ccacggcgcc
      541 atgcaggtcg tgactgtggt cgtggtggtg gtggtagatg gccaggctct tggcgtcctg
      601 gccgaacagc tcgacgaacg cggggtcgtt gctgacctgc tccgggtggc ccgaacagca
      661 cacgtggcgg ttgaggcaga ccacctgatc ggtggtgctc atcaccaggt gcaggtcgtg
      721 ggacaccatc agcacgccgc agccgtggcg gtcgcgtagc tgggtgatca gccggtacag
      781 ctcggcctgg ccggccacgt cgacgccctg caccggctcg tcgagtacca gcagctcggg
      841 ctggcgcagc agggcgcggg ccagcagtac acgctgcagc tcgccaccgg agacgctctg
      901 cagcgggctg tctagcacct gcccggcgcc gacttcttcc agcgcggcgt gcgcggcggc
      961 gcggtcgacg cccggcacca ggcgcaggaa gcgcagcacc gagagcggca gggtcgggtc
     1021 gacgtgcagc ttctgcggca tgtagccgat gcgcaggcgc gtcttgcgcc gcaccgtgcc
     1081 gctgtccggc ttgagcaggc cgagcacggc gcgcaccagg gtggtcttgc cggcgccgtt
     1141 ggggccgatc agggtgacga tctcgccggg acgcacggtg agctgcacct gctgcaggac
     1201 cggctggccg gcgaaagcga cgcccacgcc gtccagctgg atcagcgcgt cgttcatgcc
     1261 gcctcccggc agctggcgca caggccgacg acttcgacgg tctggttttc cacggtgaag
     1321 ccgacttcgc tggcaccgct ggaaatggcc tcgctgatgg tcggcagctc cagttcgatg
     1381 gcggtgtgac aggccttgca gatgaggaac tggccctggt gcagctggcc ggggtgcacg
     1441 cagccgacga aggcgttgag cgaggcgatg cggtgcacca ggccgttctc cagcaggaag
     1501 tccagcgcgc ggtagacggt gggcggcgcg gcgcggcggc cgtcctcctc gctcagcacg
     1561 gcgaggatgt cgtaggcgcc gagcggcttg tggctggccc agaccagttc cagcacgcgc
     1621 ttgcgcagcg cggtcagacg cgtaccctgc tgggcgcaga tctgctcggc ctcggccagg
     1681 gcatcggcga cgcagcgcga atggtcgtgc ggcaggcagg ccagcggggt attgccggta
     1741 tagggcttga acatggcgag acgtccgggt ggagagacgt tattctatta cccttttgca
     1801 ttcgagtctt gccgtcgtgt cacgcctttt cctgttcctc gccgccgccc ttctcagcct
     1861 ccacgcccag gccgaagtga aggtactcac cagcatcaaa ccgctgcagc tgatcgccgc
     1921 cgccgtccag gacggcctgg gccagcccga ggtattgctg ccaccgggcg cctcgccgca
     1981 ccacttcgcc ctgcgcccgt ccgacgtgcg ccgggtgcag aacgccgagc tgctgtactg
     2041 gatcggcccg gacatggaga gcttcctgcc gcgtgtgctc agtggccgcg agcggccgag
     2101 cgtcgccgtg caggcgctgc ccgggctgac gctgcgtcac ttcggcgagg gcgagcatca
     2161 ccatcacgag cacgacggcg agcagcacga ccatgctcac cgccccggca gcctggatgc
     2221 acacctctgg ttgctgccgg ccaatgcccg ggtgatcgcc gcgaagatgg ccgccgacct
     2281 ggccgccgcc gatccgggca acgccgcgcg ctaccaggcc aatctgcagg ccttcgagca
     2341 gcgcctcgcg agcctcgatg gcgaactgaa gtcgcgcctg gcgccgctgg ccgagcagcc
     2401 gttcttcgtc ttccaccagg ccttcgacta tttcgagtcc gcctacggcc tggaacacgc
     2461 cggcgtattc agcgccgcca gcgaagtgca gcccggcgcg cgccaggtcg ccgccatgcg
     2521 cgaacggctc aaggccgccg gcccggcctg cgtgttcagc gagccgccgc tgcgcccgcg
     2581 cctggccgag acgatctccg ccggtctgcc ggtgcagctg tccgagctgg atgccctggg
     2641 cgccagcgca cagagctatg agcagctgct gcggaacctg gccgacgggc tggccggctg
     2701 cctggaggct ctctgagagg gaccatgcgc ggcaagggat ggctgtgggt gacgctggcg
     2761 ctggggttga tgagcctgag tgcgctggcc ggctggcagg ccgcgcgctg gcaggcgggg
     2821 ctggtggatc tgctctgctc ggggg
//
LOCUS       DATIHC010000209         3593 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33281, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000209 DATIHC010000000
VERSION     DATIHC010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3593
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33281"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            69..1559
                     /locus_tag="VLF16_03325"
     CDS             69..1559
                     /locus_tag="VLF16_03325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013715108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MDR family MFS transporter"
                     /protein_id="HSX69941.1"
                     /translation="MMSAMLGAFMAVLDIQITNSSLKDIQGALSATLEEGSWISTSYL
                     VAEIIMIPLTAWLVQLLSARRLAVWVSIGFLLSSLLCSMAWNLESMILFRALQGFTGG
                     ALIPLAFTLTLIKLPEHHRAKGMALFAITATFAPSIGPTLGGWLTENWGWEYIFYINI
                     PPGLLMIAGLMYGLDKKPPHWELLKSTDYAGIVTLGMGLGCLQVFLEEGHRKDWLESS
                     LIVGLGSVAVVSLILFVILQFSRDNPLINLRILRERNFGLTSISSLGMGLGLYGSIYL
                     LPLYLAQIQGYNALQIGEVIMWMGLPQLFLIPLVPKLMKVVPPKVLCALGFALFGASS
                     FFSGQLNPDFAGEQFNHIQIIRALGQPMIMVTISLIATAYIQPQDAGSASSLFNILRN
                     LGGAIGIALLATLLDSRAKEYFDYLREALVPGNPQVDERLALLAEQLGSQQAALGKLS
                     EITHQQALIMAYNDAFHFVGLALAVSMIAVLLTRALPAGVTGGAAH"
     gene            1648..2541
                     /locus_tag="VLF16_03330"
     CDS             1648..2541
                     /locus_tag="VLF16_03330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016491923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HSX69942.1"
                     /translation="MSASRYRSLLLAGAFLVIYLGWGTTYLANHFLLRELPPFVIGTL
                     RFCLAGVLALLWVAARGGLKVQRSDWGAALIGGLLLIAVGQGALIYANQHLPTGMLAM
                     LYTTLPLWSVALEWLLDERPPLWVLLGLAIAIGGIVLLMGDGLGNEAGLAQWFSGALV
                     LAATLLWALGAWWLRQRPPLRSPATGLGLQMLVGALVLAALGLWHGDWQVLRLSDLSG
                     AGWLWLLYLVLPVSLGVYPAYFWLLREVRPSLVSTFAFVNPVVALLLGYLILDERLTL
                     SAGLACLAILAGVSMIIFGRR"
     gene            complement(2738..>3593)
                     /locus_tag="VLF16_03335"
     CDS             complement(2738..>3593)
                     /locus_tag="VLF16_03335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HSX69943.1"
                     /translation="TIFVSATPGPYEAEHAGRVIEQVVRPTGLVDPEVEVRPARTQVD
                     DLLSEIRKRVAVEQRVLVTTLTKRMAEDLTDYLADHDVKVRYLHSDIDTVERVEIIRD
                     LRTGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGR
                     AILYADNMTGSMQRAIDETERRREKQMAFNEANGIVPKGVVKDIKDILEGAVVPGARS
                     NKRKAAAKAAEENARYEADLRSPSEITKRIRQLEEKMFQLARDLEFEAAAQMRDEIQK
                     LRDRLLQV"
BASE COUNT          492 a         1257 c         1150 g          694 t
ORIGIN      
        1 cgaacaccat ggcggctgac gcgctgctgc gcccggtcgg agaaccaagc cggcgcgact
       61 ggatcgcggt gatgagcgcc atgctcggcg ccttcatggc cgtgctggac atccagatca
      121 ccaactcctc gctcaaggac atccagggcg cactgtcggc caccctggag gaaggctcgt
      181 ggatctccac ctcctacctg gtggccgaga tcatcatgat cccgctcacc gcctggctgg
      241 ttcagctgct ctcggcgcgg cgcctggccg tgtgggtgtc catcggtttc ctgctctcct
      301 ccctgctctg ctccatggcc tggaacctgg agagcatgat cctgttccgc gccctgcagg
      361 gcttcaccgg cggcgcgctg atcccgctcg cgttcaccct gaccctgatc aagctgccgg
      421 agcatcaccg ggccaagggc atggcgctgt tcgccatcac cgctaccttc gccccctcca
      481 tcggcccgac cctgggcggc tggctgaccg agaactgggg ctgggaatac atcttctaca
      541 tcaacattcc gccgggcctg ttgatgatcg ccggcctgat gtacggcctg gacaagaagc
      601 cgccgcactg ggaactgctg aagagcaccg actacgccgg catcgtcacc ctgggcatgg
      661 gcctgggctg cctgcaggtt tttctcgagg aaggccaccg caaggattgg ctggagtcca
      721 gcctgatcgt cggcctgggc agcgtggcgg tggtcagcct gattctcttc gttatcctcc
      781 agttctcgcg ggacaacccg ctgatcaacc tgcgcatcct gcgcgagcgc aacttcggcc
      841 ttaccagcat ctccagcctg ggcatgggtc tggggctata cggctcgatc tacctcttgc
      901 cgctgtatct ggcgcagatc cagggctaca acgccctgca gatcggcgag gtaatcatgt
      961 ggatggggct gccgcagctg ttcctcatcc cgctggtgcc caagctgatg aaggtggtgc
     1021 cgcccaaggt gctgtgcgcg ctgggcttcg ccctgttcgg cgcctccagc ttcttctccg
     1081 ggcagctcaa cccggacttc gccggggagc agttcaacca tatccagatc atccgcgcgc
     1141 tcggccagcc gatgatcatg gtgaccatct cgctgatcgc caccgcctat atccaaccac
     1201 aggacgccgg ctcggcatcg agcctgttca acatcctgcg caacctgggc ggcgccatcg
     1261 gcatcgccct gctggccacc ctgctggaca gccgcgccaa ggaatacttc gactacctgc
     1321 gcgaggccct ggtaccgggc aaccctcagg tggacgagcg cctggcgctg ctcgccgagc
     1381 agctcggcag ccagcaggca gccctgggca agctcagcga gatcacccat cagcaggcgc
     1441 tgatcatggc ctacaacgac gccttccatt tcgtcggcct ggcgctggcc gtcagcatga
     1501 tcgcggtgct gctgacccgc gccctgccgg cgggcgtgac cggaggcgcg gcgcactagc
     1561 cacggtgcaa cgatccggcg cggcgccccg gatcgtttgc tcgtacactt cgcgcccctc
     1621 attccgcctc gcctgctcag gttttccatg tccgcctcgc gctatcgctc gctcctcctg
     1681 gccggtgcct ttctggtcat ctatctcggc tggggcacca cctacctggc caaccacttt
     1741 ctgctgcgcg agctgccgcc gttcgtcatc ggcaccctgc gcttctgcct ggccggcgtg
     1801 ctggcgttgc tctgggtggc ggcacgtggc gggttgaagg tacagcgcag cgactggggt
     1861 gccgcactga tcggcggcct gctgctgatc gcggtcggcc agggcgcgct gatctacgcc
     1921 aaccagcacc tgcccacggg catgctggcg atgctctaca ccaccctgcc gctgtggagc
     1981 gtggcgctgg aatggctgct ggacgaacgc ccgccgctgt gggtgctgct cggcctggcc
     2041 atcgccatcg gtggcatcgt gctgctgatg ggggatggcc tgggcaacga ggccgggctg
     2101 gcgcagtggt tttccggcgc cctggtgctg gcggccaccc tgctctgggc cctcggcgcc
     2161 tggtggttgc gccagcgccc gccgctacgc tcgccggcga ccgggctggg cctgcagatg
     2221 ctggttggcg cactggtgct ggccgccctc ggcctctggc atggcgactg gcaggtactg
     2281 cggctgagcg acttgagtgg cgccggctgg ctgtggctgc tctatctggt gctgccagtc
     2341 agcctgggcg tgtaccccgc ctacttctgg ctgctgcgcg aggtgcgtcc gagcctggtg
     2401 tcgaccttcg ccttcgtcaa cccggtggtg gccctgctgc tgggctacct gatcctcgac
     2461 gaacgcctga ccctgtccgc cggcctggcc tgcctcgcca tcctggccgg cgtgtcgatg
     2521 atcatcttcg gtcggcgctg acgccctgct ttcttgtggg gcagctgggc ggcattccga
     2581 ttgacccgat gatcttatgt ggtccctatc gcgaccaagg ggcgctccca cagaaagcgc
     2641 gccctcacaa ccaagccgca tcccagccac gtagcccgga tgcaatccgg gaacggagcc
     2701 gccaatctac ccggattgca tccgggctac caagagctca gacctgcagc agccggtcgc
     2761 gcaacttctg gatctcgtcg cgcatctgcg cggcggcctc gaactccagg tcgcgggcca
     2821 gctggaacat cttctcctcg agctggcgga tgcgcttggt gatctcgctg ggcgaacgca
     2881 ggtcggcctc gtagcgggcg ttttcctccg ccgccttcgc cgcggccttg cgcttgttgc
     2941 tgcgcgcgcc gggcaccacc gcgccttcga ggatgtcctt gatgtccttg accacgccct
     3001 tggggacgat gccattggcc tcgttgaagg ccatctgttt ctcgcggcgc cgctcggtct
     3061 cgtcgatcgc ccgctgcatc gagccggtca tgttgtcggc gtagagaatc gcccggccgt
     3121 gcaggttgcg cgcggcgcgg ccgatggtct ggatcagcga gcgctcgctg cgcaggaagc
     3181 cctccttgtc cgcgtcgagg atcgccacca gcgacacctc cggcatgtcc aggccctcgc
     3241 gcagcaggtt gatacccacc agcacgtcga aggcgccggt gcgcaggtcg cggatgattt
     3301 ccacccgctc caccgtgtcg atgtccgagt gcaggtagcg caccttgacg tcgtggtcgg
     3361 ccaggtagtc ggtgaggtcc tcggccatgc gtttggtcag ggtggtgacc agcacgcgct
     3421 gctcgaccgc cacgcgtttg cggatctccg agagcaggtc gtcgacctgg gtgcgcgccg
     3481 ggcgcacttc cacttccggg tccaccaggc cggtggggcg caccacctgc tcgatcaccc
     3541 gtccggcgtg ctcggcctcg tagggcccgg gggtggcgga aacgaaaatg gtc
//
LOCUS       DATIHC010000210         1819 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_9938, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000210 DATIHC010000000
VERSION     DATIHC010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1819
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9938"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(8..511)
                     /locus_tag="VLF16_03340"
     CDS             complement(8..511)
                     /locus_tag="VLF16_03340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017002209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HSX69944.1"
                     /translation="MPKHMLRPQGDFPTAGLIRRFAAIFYDFLLCVALVMVIGLIYQQ
                     GLLRLIHGSERLLELSQAGALDNDPLLASLVLLGLFAFFAKFWTHNGQTLGMQAWGLR
                     IQNADGSAISLWQALLRFVVAIGSWLFLGLGFFWSLWDKEKRSWHDIYSESRVVQLPK
                     GIHKQGK"
     gene            complement(617..829)
                     /locus_tag="VLF16_03345"
     CDS             complement(617..829)
                     /locus_tag="VLF16_03345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012699820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HSX69945.1"
                     /translation="MSNRQTGTVKWFNDEKGFGFITPESGPDLFVHFRAIEGSGFRSL
                     KEGQKVTFEAVQGQKGMQADKVQVLG"
     gene            complement(1086..1170)
                     /locus_tag="VLF16_03350"
     tRNA            complement(1086..1170)
                     /locus_tag="VLF16_03350"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1134..1136),aa:Leu,seq:caa)
     gene            1401..>1819
                     /locus_tag="VLF16_03355"
     CDS             1401..>1819
                     /locus_tag="VLF16_03355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosylmethionine:tRNA
                     ribosyltransferase-isomerase"
                     /protein_id="HSX69946.1"
                     /translation="MRVADFHFDLPDELIARHPLAERSASRLLVLDGASGALAHRQFA
                     DLLDYLRPGDLMVFNDTRVIPARLFGQKASGGKLEILVERVLDEHRVLAHVRSSKSPK
                     PGSRIHIEGGGEAEMVARHDALFELRFAEAVLPLLDRV"
BASE COUNT          336 a          540 c          595 g          348 t
ORIGIN      
        1 gggctgatca cttgccctgc ttgtgaatgc ccttgggcag ctgcaccacc cggctttcgg
       61 aatagatgtc gtgccagctg cgcttctcct tgtcccagag gctccagaag aagccgagcc
      121 cgaggaacag ccatgagcca atggccacga cgaagcgcag cagcgcctgc cacaggctga
      181 tcgccgagcc atcggcgttc tggatgcgca ggccccaggc ctgcatgccg agggtctggc
      241 cattgtgggt ccagaacttg gcgaagaagg cgaacagacc gagcagcacg aggctcgcca
      301 gcagcggatc gttgtccagg gcgccggcct gggacagttc gagcagtcgc tcgctgccgt
      361 ggatcaggcg cagcaggccc tgctggtaga tcaggccgat gaccatgacc agggcgacgc
      421 agagcaggaa gtcgtagaag atcgcggcga agcggcggat cagtccggcg gtgggaaaat
      481 cgccctgggg gcgcagcatg tgcttgggca tggagggctc gcggcgtgaa agtgcgcgcg
      541 attgtacggg gtgaaagcag cgggcacaaa aaagcccctg atgtcgccat caggggctct
      601 ttcgtagcag cagcgattag cccagaacct ggaccttgtc agcttgcatg cctttctggc
      661 cttgcacggc ttcgaaagtg accttctggc cttctttcag gctgcggaag ccactacctt
      721 cgatagcgcg gaagtgcacg aacagatccg gaccgctctc gggggtgatg aagccgaagc
      781 ccttctcgtc gttgaaccat ttgacggtgc cggtttgacg attcgacatt gtcttatttc
      841 cttgaaacta gagttgatga cagcctcccg gttttggaca cgagagggct ggaactggtt
      901 gcagagagta agagaagtcg agcgggatgt agcggatcta ggatctactg caccaggtca
      961 cgattcaagg cgacccatgc aaacacagtt ggccaactct acgctaactc aaatgagttt
     1021 gccaaccccc ttggaagggc tgattccaga ggctttgcgg gggattttgg aggggggata
     1081 aatcgtggtg ccccgggaga gactcgaact ctcacttctt tcgaaaacgg attttgaatc
     1141 cgccgcgtct accgattccg ccaccgaggc acgatgggcg cgcagtatag ggaggcggtt
     1201 ctggccggtc aattgcgcgc gcaggcctct accgccgcca gatgacgtct cccagccgcg
     1261 gcgtttttgc gtgagtgccc ctgattgtgc gccgggaagc agcgcctcgg cgcggcatgc
     1321 tcaaggccgg cgatcgttcc gtgcgtggcc cgcgcgtgcg ctttccggta agctctgcgc
     1381 cccctgcgag actgaccccc atgcgtgttg ccgacttcca tttcgacctg cccgatgaac
     1441 tgatcgcccg ccatccgttg gccgagcgca gcgccagtcg tctgctggtg ctggacggtg
     1501 cgagcggtgc gctggcccat cggcagttcg ccgacctgct cgactacctg cgccccggcg
     1561 atctgatggt gttcaacgac acccgggtga tcccggcgcg gctgttcggc cagaaggctt
     1621 ccggtggcaa gctggagatt ctggtcgaac gcgtgctgga cgagcatcgg gtactggcgc
     1681 acgtgcgctc cagcaagtcg cccaagcccg gctctcgcat ccatatagaa ggtggtggcg
     1741 aggccgagat ggtcgcccgc cacgacgcat tgttcgagct gcgcttcgcc gaggcggtgc
     1801 tgccactgct ggaccgggt
//
LOCUS       DATIHC010000211         2425 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42588, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000211 DATIHC010000000
VERSION     DATIHC010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2425)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2425)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2425
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42588"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..858
                     /locus_tag="VLF16_03360"
     CDS             <1..858
                     /locus_tag="VLF16_03360"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017336808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HSX69947.1"
                     /translation="PEFAAAGKERVTLRQLLSHRAGLPALHAPLPAEALYDWQQMTDA
                     LAAERPWWTPGEAHGYSPVTYGWLVGELLRRVDDRGPGECIVERIAKPLGLDFHVGLA
                     DEEFHRVSHIARKKGDMGDAAAQRLLKCMMSEPAALSTRAFANPPSILTSTNKPEWRR
                     MQQPAANGHGNARSLAGFYAALLDGRLLEPELLGEMTREHSCGEDRTLLTATRLGLGC
                     MLDQADVANATYGLGRKAFGHPGAGGSVGFADPEREVAFGFVTNSLGPYVLMDPRAQK
                     LARALGQCL"
     gene            882..1592
                     /locus_tag="VLF16_03365"
     CDS             882..1592
                     /locus_tag="VLF16_03365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008031658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HSX69948.1"
                     /translation="MHKKTLVLLCCLSLAACANNSEKKEEGTSSWWPFGGSDKPVAAA
                     KKAPPKIDHELTNAWLDEYEPRLKAALADSKMELERRENLLVVTAPVESSFNPDRPSM
                     LMPAVLGPFTKVAKILETDKRTGVLILGHADSSGQVDTNRKLSEDRAKAVASIFRLSG
                     LQRDRLLLKGVGSDMPRAANDSAAGRALNRRVEILLTPQKTLVALLARYNQPASVGAS
                     NLPVAQVAADQKKKDKAQ"
     gene            1623..2270
                     /gene="pdxH"
                     /locus_tag="VLF16_03370"
     CDS             1623..2270
                     /gene="pdxH"
                     /locus_tag="VLF16_03370"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HSX69949.1"
                     /translation="MSQTLADMRRDYTRDGLDEAQAPAEPFALFRHWFDDAVKTEQLP
                     VEPNAMTLATVDEEGRPHCRVLLLKGLDDRGFTFFSNYESAKGNQLAARPFAAMTFFW
                     PSLERQVRIEGRVEKVSAQESDAYFQVRPLGSRLGAWASPQSRVIESREELQRLLAET
                     EQRFLDHAPECPPYWGGYRLLPERIEFWQGRASRLHDRLNYRLLDGGWLRERLAP"
     gene            2298..>2425
                     /locus_tag="VLF16_03375"
     CDS             2298..>2425
                     /locus_tag="VLF16_03375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar diacid recognition domain-containing
                     protein"
                     /protein_id="HSX69950.1"
                     /translation="MLELDSTLAQHIVDRAMAILPYNINVMDAQGMIIGSGDPQRL"
BASE COUNT          417 a          864 c          781 g          363 t
ORIGIN      
        1 cccgagttcg ccgccgccgg caaggagcgc gtgaccctgc gccagctgct cagccaccgt
       61 gccggcttgc cggccctcca cgcgccgctg ccggccgagg cactgtacga ctggcagcag
      121 atgaccgacg cgctggctgc cgagcgccct tggtggacgc cgggcgaggc ccacggctat
      181 tcccccgtca cctacggctg gctggttggc gagctgctgc gccgggtcga cgaccgcggc
      241 ccgggcgagt gcatcgtcga gcgcatcgcc aagcccctgg gcctggactt tcacgtgggc
      301 ctggccgacg aggagttcca ccgcgtatcc cacatcgccc gcaagaaggg cgacatgggt
      361 gacgccgccg cccagcgcct gctcaagtgc atgatgagcg agccggcggc gctgagcacc
      421 cgcgccttcg ccaatccgcc gtccatcctc accagcacca acaagccgga atggcggcgc
      481 atgcagcagc cggcggccaa cggccatggc aacgcccgct cgcttgccgg cttctacgcg
      541 gcgctgctgg acggccgcct gctcgagccg gaactgctcg gcgagatgac ccgcgagcat
      601 tcctgcggcg aagaccgcac gctgttgacc gccacccgcc tgggcctggg ctgcatgctc
      661 gatcaggcgg acgtggccaa tgccacctac ggcctgggcc gcaaggcttt cggtcatccg
      721 ggggcaggcg gctccgtcgg ctttgccgac ccggaacgcg aggtcgcctt cggcttcgtc
      781 accaatagtc tcggaccata tgtactgatg gacccgcgtg cgcagaagct ggcgcgtgcg
      841 ctgggccaat gcctgtaact tgcctggggg aagatctgac catgcataag aaaacactcg
      901 tcctgctctg ctgcctcagc ctggctgcct gcgccaacaa ttccgagaag aaggaggagg
      961 gcaccagtag ctggtggccc ttcggcggca gcgacaagcc ggtagccgcg gccaagaagg
     1021 cgccgcctaa gatcgatcac gagttgacca atgcctggct ggacgaatac gagccgcgcc
     1081 tcaaggctgc gctggcagac agcaaaatgg agctggagcg ccgggagaac ctgctggtgg
     1141 tgaccgcccc cgtggaaagc tctttcaacc cggaccgccc gagcatgctg atgccggcgg
     1201 tactcggccc gttcaccaag gtcgccaaga tcctcgagac cgacaagcgc accggcgtgt
     1261 tgatcctcgg tcacgcggac agctccggcc aggtcgacac caaccgcaag ctcagcgagg
     1321 accgcgccaa ggcggtggcc tcgatcttcc gtctcagcgg cctgcagcgc gaccgcctgc
     1381 tgctcaaggg cgtcggctcc gatatgccgc gcgccgccaa cgacagcgcc gccggtcgcg
     1441 ccctgaatcg ccgcgttgaa atcctgctca ccccgcagaa gaccctggtg gcgctgctgg
     1501 cgcgttacaa ccagccggcg tcggtgggcg ccagcaacct gccggtggct caggttgccg
     1561 cagatcaaaa gaagaaggac aaggcccagt aagctcgcga catcattgaa gaggatgtgc
     1621 gcatgagtca gacccttgcc gatatgcgtc gcgactacac ccgcgacgga ctcgacgaag
     1681 cccaggcacc cgccgagccc ttcgccctgt tccgtcactg gttcgacgac gcggtgaaga
     1741 ccgagcagct gccggtcgag cccaacgcca tgaccctggc cacggtggac gaggaggggc
     1801 gcccgcattg ccgggtgctg ctgctcaagg gcctggacga ccgcggcttc accttcttca
     1861 gcaattacga gagcgccaag ggcaaccagc tggcggcgcg gcccttcgcc gccatgactt
     1921 tcttctggcc gagcctggag cgccaggtgc gcatcgaagg gcgggtcgag aaggtctcgg
     1981 cgcaggagtc ggacgcctac ttccaggtcc gcccgctggg cagtcgcctg ggcgcctggg
     2041 cctcgccgca gagccgggtg atcgagagcc gcgaagaact gcagcgcctg ctggccgaaa
     2101 ccgagcagcg cttcctcgac cacgcgcccg agtgcccgcc gtactggggc ggctaccgct
     2161 tgctgcccga gcgcatcgag ttctggcagg gccgcgccag ccgtctgcac gaccgcctca
     2221 actaccgtct gctcgacggt ggctggctgc gcgagcgtct cgccccctaa actctcgcct
     2281 ccttgcggag gctttccatg ctcgaactcg attccaccct ggcgcagcac atcgtcgacc
     2341 gtgccatggc catcctgcct tacaacatca atgtcatgga cgcccagggc atgatcatcg
     2401 gcagcggcga cccacagcgc ctgca
//
LOCUS       DATIHC010000212         4680 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2914, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000212 DATIHC010000000
VERSION     DATIHC010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4680
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2914"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..867
                     /locus_tag="VLF16_03380"
     CDS             <1..867
                     /locus_tag="VLF16_03380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSX69951.1"
                     /translation="GVNLPLLHAEQLIGVLGITGAPDTVRPYAELVRMAAEMLVEQRQ
                     LQAERHWQRHQLETWLRQLADTSVGLAQLAAEAERIGLQLGWPRQLVLLELTEEGDPS
                     RALAALAGKAEQCGPLGARQLLLCRTHLPGRDDAAWLTQLDGRGLNIRRMLLSDALHD
                     LSDLREAALALRDLQAYAQARKPAGRLLRLEEQRLQALLHGRRHDWSLQRWLAPLRRV
                     LAQDPQGQLRQTLLAWCRHDGHPQACADDLGIHRNTLRYRLERIAELSGLDMTRRDQR
                     LLFTLGLDLLDE"
     gene            990..2348
                     /locus_tag="VLF16_03385"
     CDS             990..2348
                     /locus_tag="VLF16_03385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HSX69952.1"
                     /translation="MLLVLILVALIAFIVLSTTRLKLHPFLALLAAAFIAGFAYQLPS
                     ADIVKTITGGFGSILGYIGIVIVLGTVIGVILERSGAAITMAETVIKLLGERFPTLTM
                     SIIGYLVSIPVFCDSGYVILNSLKNALAARMKISMVAMSVALATGLYATHTFVPPTPG
                     PIAAAGNLGLDASLGLVIAVGLVVAFITALAGMWWANRFIGKDIALEDDGLPLPAAED
                     FAELKARYGKLPTAFQAFAPIFVPILLICLGSIAVFPSKPLGEGFLLTALSFLGQPVV
                     ALLVGLALACTLLKSDGKRKEFHDHVVEGLVQAAPILLITGAGGAFGAVLKVTPLGDY
                     LGNTLSALGIGLFMPFVVAAALKSAQGSTTVALVTTSALVAPMLGQLGLDSEMGRVLT
                     VMAIGAGAMTVSHANDSFFWVVTQFSRMPVAVAYRAQTMATLIQGLAGIITVWLLSLV
                     LL"
     gene            2392..3525
                     /locus_tag="VLF16_03390"
     CDS             2392..3525
                     /locus_tag="VLF16_03390"
                     /EC_number="2.7.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003452573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008887 - glycerate kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HSX69953.1"
                     /translation="MKIVIAPDSFKESLSAPDVAAAIARGWTQVFPDAEVLLRPMADG
                     GEGTVDAVLAATGGDRRELTVRGPLGEPVLAHWGWLGDATAVLEMAAASGLHWVPRER
                     RDATVTTSYGTGELIRAALDAGAERIILGLGGSATNDGGVGLLQALGVRFLDADEREL
                     PPGGAALARLARIDVAQMDPRLLQAKVEIAADVDNPLCGPKGASAVFGPQKGASLQQV
                     ELLDAALGCYARVAAATLGEDHSGVPGVGAAGGLGFAAKAFLHASFRPGIELVAELSG
                     LAEAVQGADLVITGEGRLDSQSLHGKTPIGVARVARAAGVPVIALAGSLGEGYQAVYE
                     AGIEAAFSLTSGPQSLEQAMHGAAAELQARACDLARIWRLARG"
     gene            complement(3522..3764)
                     /locus_tag="VLF16_03395"
     CDS             complement(3522..3764)
                     /locus_tag="VLF16_03395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69954.1"
                     /translation="MDYFIVAITTVAGLYFHWWLYVRIRRWMERDLALSMAAGDPAMQ
                     RYMLERLAEAKASGVRRGQLDEWLHQAACEYLQRRG"
     gene            3922..4386
                     /locus_tag="VLF16_03400"
     CDS             3922..4386
                     /locus_tag="VLF16_03400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69955.1"
                     /translation="MRNTKLLAASFVALSLVLGGCASNLSGDTYSRDEARKVQTVRLG
                     TIEMLRPVKIEGTKTPIGAGAGAVIGGVGGSAIGGGRGAAVAAVIGAVAGGLLGAATE
                     EGMTRTQGVEITVREDDGTLRAYVQQVQQNEVFRVGERVRILTVDGTSRVAH"
     gene            4439..>4680
                     /locus_tag="VLF16_03405"
     CDS             4439..>4680
                     /locus_tag="VLF16_03405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016780773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2834 domain-containing protein"
                     /protein_id="HSX69956.1"
                     /translation="MKARLLSSAVLILFSAYTLLVMLQAEQSLWQFGQQLMSSPDTAQ
                     VVIDLYLLAALACVWMYHDNKARQRPLLSLLPYFLVT"
BASE COUNT          667 a         1657 c         1599 g          757 t
ORIGIN      
        1 ggggtcaacc tgccgctgct gcatgccgag cagctgatcg gcgtgctcgg catcactggt
       61 gcgccggata ccgtaaggcc ctacgccgag ctggtgcgca tggccgccga gatgctggtg
      121 gagcagcgcc agttgcaggc cgagcggcac tggcagcggc accagttgga aacctggctg
      181 cgtcagctgg ccgacacctc cgttggactc gcccagctgg ccgccgaggc cgagcgcatc
      241 ggcctgcaac tgggctggcc gcgacagctg gtgctgctgg agctgacgga agagggcgat
      301 ccctcacgtg cgctcgccgc gttggccggc aaggccgaac aatgcggccc gctcggcgca
      361 cgccagctgc tgctgtgccg cacgcatctg cccggtcgcg acgatgccgc ctggctgacc
      421 cagctcgacg gccgcggcct gaacatccgc cgaatgctgc tcagcgacgc cctgcacgat
      481 ctttccgacc tgcgcgaggc ggccctggcg ctgcgcgacc tgcaggccta cgcccaggcc
      541 cgcaagcccg ccgggcgttt gctgcggctc gaggagcaac gcctgcaggc cctgctgcac
      601 ggtcgccgcc acgactggtc gctgcagcgc tggctggcgc cgctgcgccg ggtgctggcc
      661 caggacccac agggccagct gcgccagacg ctgctggcct ggtgtcgcca cgacggccac
      721 ccccaggcct gcgccgacga cctcggcatc catcgcaaca cgctacgcta tcgtctggaa
      781 aggatcgccg aactgagcgg tctggacatg acccggcgcg atcagcgcct gctgttcacc
      841 ttgggtctcg acctgctgga cgagtgactt gtgcggatgc acagaatgag ggccgttggc
      901 gaggcgtgct gtacggcgtt cgcataggga ttccgtggcc gcctcgctcc acaatggtcg
      961 accctaataa caacaacgag gaataggcca tgctcctggt cctgattctg gtggcgctga
     1021 tcgcgttcat cgtgctgtcc accacccgcc tcaaactgca tcccttcctg gctctgctcg
     1081 ccgccgcctt catcgccggc ttcgcctacc aactgcccag cgcggacatc gtcaagacca
     1141 tcaccggtgg tttcggcagc atcctcggct acatcggcat cgtcatcgtc ctcggcaccg
     1201 tcatcggggt gatcctcgag cgcagcggtg cggccatcac catggccgag acggtgatca
     1261 agctgctcgg cgagcgcttc ccgaccctga ccatgtcgat catcggctac ctggtgtcga
     1321 tcccggtgtt ctgcgactcc ggctacgtca tcctcaactc gctgaagaac gccctggccg
     1381 cgcggatgaa gatttccatg gtggcgatga gcgtggccct ggccaccggc ctctacgcca
     1441 cccacacctt cgtgccgccg acgcccggcc ccatcgccgc cgccggcaac ctgggtctgg
     1501 acgccagcct cggcctggtg atcgccgtcg gcctagtcgt cgccttcatc accgcgctgg
     1561 ccggcatgtg gtgggccaac cgcttcattg gcaaggacat tgcgctcgag gacgacggcc
     1621 tgccgctgcc ggccgccgaa gacttcgccg agctgaaggc gcgctacggc aagctgccga
     1681 ccgccttcca ggcattcgcg ccgatcttcg tgccgatcct gctgatctgc ctgggctcga
     1741 tcgccgtgtt cccgagcaag ccgctgggtg agggtttcct gctcaccgcg ctgagcttcc
     1801 tcggtcagcc ggtggtggcg ctgctggtcg gcctggcgct ggcctgcacc ctgctcaaga
     1861 gcgacggcaa gcgcaaggaa ttccacgatc acgtggtcga gggcctggta caggccgcgc
     1921 cgatcctgct gatcaccggt gccggcggtg ccttcggcgc ggtgctcaag gtcaccccgc
     1981 tgggcgacta cctgggcaac accctgtcgg cactcggcat cggcctgttc atgccgttcg
     2041 tggtggctgc cgcgctgaag agcgcccagg gctcgaccac cgtggcgctg gtcaccacct
     2101 cggcgctggt cgccccgatg ctcggccagc tcggcctgga cagcgagatg ggccgcgtgc
     2161 tcaccgtgat ggccatcggc gcgggcgcca tgaccgtgtc ccacgccaac gacagcttct
     2221 tctgggtcgt cacccagttc agccgcatgc cggtggccgt ggcctaccgc gcccagacca
     2281 tggccaccct catccagggc ctggccggca tcatcaccgt ctggctgctc agcctggtcc
     2341 tgctgtaatg cacagcggcg cctcgggcgc cgcttcgctc gaaggttttt catgaagatc
     2401 gtcatcgctc ccgactcctt caaggagagt ctgtccgcgc ccgacgtggc cgctgccatc
     2461 gcccgtggct ggacgcaggt gttccccgac gccgaagtgt tgctgcggcc catggccgat
     2521 ggcggcgaag gcacggtcga cgcggtgctg gccgccaccg gtggcgatcg ccgcgaactg
     2581 acggtacgcg gcccgctggg cgagccggta ctggcccact ggggctggct gggcgacgcc
     2641 acggcggtgc tggaaatggc cgccgccagc ggcctgcact gggtgccgcg ggagcgccgc
     2701 gacgccaccg tgaccaccag ctacggcacc ggcgaactga ttcgtgcggc gctggatgcc
     2761 ggcgcggagc gcatcatcct cggccttggc ggcagcgcca ccaatgatgg tggtgtcggc
     2821 ctgctgcagg cgctcggcgt gcgctttctc gacgccgacg agcgcgagct gccgcccggt
     2881 ggcgcggcgc tggcacgcct ggcgcgcatc gatgtggcgc agatggaccc gcgcctgttg
     2941 caagcgaagg tggaaatcgc cgccgacgtc gacaacccgc tgtgcggccc caagggcgcc
     3001 tccgcggtct tcggcccgca gaagggcgcc agcctgcagc aggtcgaact gctggacgcg
     3061 gcgctggggt gctacgcccg tgtggcggcc gccacgctgg gtgaggatca cagcggtgtg
     3121 ccgggcgtgg gcgcggccgg cggcctcggc ttcgccgcca aggccttcct gcatgcgagc
     3181 ttccgcccgg gcatcgagct ggtggccgag ctgtcgggcc tggccgaggc ggtgcagggc
     3241 gccgacctgg tgatcaccgg cgagggccgt ctggattcgc agagcctgca cggcaagacg
     3301 ccgatcggcg tggcccgcgt ggcccgcgcc gccggcgtgc cggtcatcgc cctggccggc
     3361 agtctggggg agggctatca ggcggtctac gaggccggca tcgaggcggc tttcagcctg
     3421 acgtccggtc cgcaaagcct ggagcaggcc atgcatggcg cggccgccga gctgcaggcg
     3481 cgggcctgcg atctggcgcg catctggcgc ctggcgcgcg gctagccacg gcgctgcaga
     3541 tattcgcagg cggcctggtg cagccactcg tccagctgtc cgcggcgcac gccgctggcc
     3601 ttggcctctg ccaggcgctc cagcatgtag cgctgcatcg ccgggtcgcc ggccgccatg
     3661 gatagcgcca ggtcccgctc catccagcgg cggatgcgca cgtagagcca ccagtggaag
     3721 tacaggcccg ccacggtggt gatggcgacg atgaaatagt ccatggcgcg attctcgagg
     3781 gttccggcgt tcatcctgcg ccgctcgggc agcgctgcac accagacccg atgtcgcacc
     3841 cacggggccg aagcggcatc gcgggtgaca ggcgggcaac gccgcggtct aatgggcaca
     3901 gccccctatg gagagaaccc catgcgtaat accaagctgt tggccgcttc cttcgtcgca
     3961 ctgagcctgg tcctgggcgg ctgcgcctcc aacctcagcg gcgataccta tagccgcgac
     4021 gaggcgcgca aggtgcagac cgtgcgcctg ggcaccatcg agatgctgcg cccggtgaag
     4081 atcgagggca ccaagacccc gatcggcgcc ggcgccggtg cggtgatcgg cggcgtgggc
     4141 ggcagcgcca tcggcggtgg ccgcggtgcc gcggtggcgg cggtgatcgg cgcggtggcc
     4201 ggcggcctgc tcggcgcggc gaccgaagag ggcatgaccc gcacccaggg cgtggagatc
     4261 accgtacgcg aggacgacgg caccctgcgc gcctatgtcc agcaggtgca gcagaacgag
     4321 gtcttccgcg tcggcgagcg cgtgcgcatc ctgaccgtcg acggcaccag ccgcgtcgcg
     4381 cactgacccc tcacggctcg gcgatcgccg ggcctttctc gacaccaggg aaggtgccat
     4441 gaaggcaagg ctgctctcgt ccgccgtact gatcctgttc tcggcataca cgctgctggt
     4501 catgctccag gccgagcaat cgctgtggca attcggccag cagctgatgt cgagcccgga
     4561 caccgcgcag gtcgtcatcg atctctatct gctcgccgcg ctggcctgcg tgtggatgta
     4621 tcacgacaac aaggcgcgcc agcgaccgtt gctgtcgttg ctcccgtact tcctggtcac
//
LOCUS       DATIHC010000213         1905 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12207, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000213 DATIHC010000000
VERSION     DATIHC010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1905)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1905)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1905
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12207"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1905)
                     /locus_tag="VLF16_03410"
     CDS             complement(<1..>1905)
                     /locus_tag="VLF16_03410"
                     /inference="COORDINATES: protein motif:HMM:NF015859.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CHASE domain-containing protein"
                     /protein_id="HSX69957.1"
                     /translation="EKASRQAQEQRFNLAVDGVELGVRERMRAYEMVLRSMAGLMAGS
                     DSVSDLEWQRATDQLQLQEHYPGIQALSWSRYLRRGELAAFVEAVRADGRGDFQVYPP
                     GEREAHLVADFINPLNWRNRRVIGFDMYSEATRRATIERARDSGEAALTGPLRLRQET
                     EKDVQTGMLLYLPVFRQNAPVSSAEERRAALLGMVAGTFRLDDLMHGILGSSAAQFQV
                     TLIDLGDTAHPLLSRDALFAQTPRFQAQRTLSVYGRDWQLGVASTPVYEAAVDSGQPV
                     GLISGLLAAVLLGLLVGGFLFLRERALHQSEVQRRRLHESEVRFRLVVEASPNAIVLV
                     DQAGNVAMVNRQIELLFGYERAELLGQPVERLLPEPLRQGHVAMRQAFHRAPEQRRMG
                     GNRELFGQHRDGRLIPLEVGLAPIRAGEELLVQAVIIDISERKAAEERFRLVVEASPN
                     AIVLVDGQGRLAMVNRQTEQMFGYGREQMLGQPVEMLLPESARGGHPQLRDGFIHDPS
                     PRRMGGSRELFGQHRDGHLIPLEVGLSPLRSGGDRLVQAVIIDISERKAAEQRLREQA
                     EQLALANRYKSEFLANMSHELRTPLNSILILSEQLRHNVAGNLSEKQVKHADIVYKAG
                     NDLLRLINDV"
BASE COUNT          289 a          663 c          650 g          303 t
ORIGIN      
        1 gcacgtcgtt gatcaggcgc agcaggtcgt tgccggcctt gtagacgatg tccgcgtgct
       61 tgacctgctt ctcgctgagg ttgccggcca cgttgtgccg cagctgctcg ctgaggatga
      121 ggatgctgtt gagcggcgtg cgcagctcgt gggacatgtt ggccaggaac tcggacttgt
      181 agcggttggc cagcgccagt tgctcggcct gctcacgcag gcgctgctcg gcggccttgc
      241 gttcgctgat gtcgatgatc accgcctgca ccagacgatc tccgccgctg cgcagcggcg
      301 acagaccgac ctccaggggg atcaggtgac cgtcacggtg ctgaccgaac agctcgcgac
      361 tgccgcccat gcgacgcggc gaaggatcgt ggatgaagcc gtcgcgcagc tgcggatgac
      421 cgcctcgggc ggattccggc agcagcatct ccaccggctg gccaagcatc tgctcgcgac
      481 catagccgaa catctgttcg gtctgacggt tgaccatggc caggcgaccc tggccatcca
      541 ccagcacgat ggcattgggc gaggcctcca ccaccaggcg gaagcgctcc tcggcggcct
      601 tgcgctcgct gatgtcgatg atcaccgcct gcaccagcag ctcttcgccg gcacggatgg
      661 gcgccaggcc gacctccaga gggatcaggc ggccgtcgcg gtgctgaccg aacagctcgc
      721 ggttgccgcc catgcggcgt tgctcgggcg cgcgatggaa ggcctggcgc atggcaacat
      781 ggccctggcg caggggctcc ggcagcaggc gctcgaccgg ctggccgagc agctcggcgc
      841 gttcgtagcc gaacagcagc tcgatctgcc ggttgaccat ggcgacgttg cccgcctggt
      901 cgaccagcac gatcgcgttg ggcgacgcct ccaccaccag acggaagcgc acctcgctct
      961 cgtgcagacg ccggcgctgc acctcgctct ggtgcagcgc gcgttcgcgc agaaacagaa
     1021 agccgccgac cagcaacccc agaagcacgg ccgccagcag gccggagatc aggccgaccg
     1081 gctggccgct gtcgaccgcc gcctcgtaca ccggcgtgct ggcgactccg agctgccagt
     1141 cgcggccata gacgctcagg gtacgctggg cctggaagcg cggcgtctgc gcgaacaggg
     1201 cgtctctgct cagcagtgga tgggcggtgt cgcccaggtc gatgagcgtc acctgaaact
     1261 gggcggcgct gctgccgagg atgccgtgca tcaggtcatc caggcggaag gtcccggcca
     1321 ccatgcccag cagcgccgcg cggcgttcct cggcggagct caccggtgcg ttctggcgga
     1381 acaccggcag gtacagcagc atgccggtct gtacgtcctt ctcggtttcc tggcgcaggc
     1441 gcagggggcc ggtcagcgcc gcctcgccgc tgtcacgggc gcgctcgatg gtggcgcgcc
     1501 gggtcgcctc gctgtacatg tcgaagccga tcacgcgacg gttgcgccag ttcagcgggt
     1561 tgatgaagtc tgccaccaga tgggcttcgc gctcgccggg gggatagacc tgaaagtccc
     1621 cgcgcccgtc cgcccgcacc gcctcgacga aggccgccag ctcgccccgg cgcagatagc
     1681 ggctccagga cagcgcctgg atgcccggat agtgctcctg cagctgcagc tgatcggtgg
     1741 cgcgctgcca ttccagatcg gaaacgctgt cgctgccggc catcagcccc gccatgctgc
     1801 gcagcaccat ttcgtaggcg cgcatgcgct cgcgcacgcc aagctcgacg ccgtcgacgg
     1861 ccaggttgaa gcgctgctcc tgggcctgcc ggctggcctt ctcca
//
LOCUS       DATIHC010000214         2073 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35737, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000214 DATIHC010000000
VERSION     DATIHC010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2073
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35737"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..682
                     /locus_tag="VLF16_03415"
     CDS             <1..682
                     /locus_tag="VLF16_03415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017362777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase C-terminal
                     domain-containing protein"
                     /protein_id="HSX69958.1"
                     /translation="YQGDPAQVRISEEETDYVLQVVNAHFKQQLSRDDILHTYSGVRP
                     LCDDESDQPSAITRDYTLSLSGTPGEAPLLSVFGGKLTTYRKLAESAMELLAPSFPHL
                     CPAWTAKAPLPGGENMDSRAALVDKLIARFGWLDRELARRWASTYGSRTWQLLDGVQR
                     QSELGDHLGAGLYTREVDYLRREEWAMEADDILWRRTKLGLFMTPGQQARLRDYLSDH
                     PQALPASA"
     gene            complement(937..1959)
                     /locus_tag="VLF16_03420"
     CDS             complement(937..1959)
                     /locus_tag="VLF16_03420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020288919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSX69959.1"
                     /translation="MRVFLFLAALVCGMPSLAANRCDVQVPTATADLGEVRLAYQSIG
                     RADDPALLLVMGLGGQLIHWPDEVVASLCEQGFRVIRFDNRDVGLSAWSGEAPSVNMS
                     YELLSYQLGLGASAPYTLRDMAGDALGLMDTLGIRQFHVLGASMGGMIAQHMADLAPR
                     RVESLTLVMTSSSAPGLPAPDPRLLHQLARREAPDRAGAIEQQADLLAALGNPSLAVD
                     RAQLLAEAELSYDRAFNPLGVQRQILAILAEPSRVELLNRLKVPTLVVHGTADPLLPV
                     MHGVHVAAHIKDSELRLIPGLAHRFQSAYKEPLLAAVLPHLRAHRLEGEQQLAQQMEG
                     AGEQPL"
BASE COUNT          346 a          736 c          701 g          290 t
ORIGIN      
        1 gtaccagggc gacccggccc aggtgcgcat cagcgaggaa gagaccgact acgtgctgca
       61 ggtggtcaac gcccacttca agcagcagct gtcacgcgac gacatcctgc acacttactc
      121 cggcgtgcgt ccgctgtgcg acgacgaatc cgaccagccc tcggcgatca cccgcgacta
      181 caccctgtcg ctgtccggca cgccgggcga ggctccgctg ctgtcggtgt tcggcggcaa
      241 gctgaccacc taccgcaagc tggccgagtc ggccatggag ctgctggcac cgagcttccc
      301 ccatctgtgc ccggcctgga ccgccaaggc gccgctgccc ggcggcgaga acatggacag
      361 ccgcgcggcg ctggtggaca agctgatcgc ccgcttcggc tggctcgacc gcgagctggc
      421 ccggcgctgg gccagcacct acggcagccg cacctggcag ctgctggacg gcgtgcagcg
      481 gcagagcgaa ctgggcgacc acctgggcgc cggcctctac acccgcgagg tggattacct
      541 gcgccgcgaa gaatgggcga tggaggcgga cgacatcctc tggcgccgca ccaagctcgg
      601 cctgttcatg acgcccggcc agcaggcgcg cctgcgcgac tacctgagcg atcacccgca
      661 ggcgttgccg gccagcgcct gacgttcagc cgcttggtgg gcgggcgaca cgcggagtgc
      721 cacggtgcgc gcggcgcacc ctaccggatt cgcgggcatc gatggtgcgg tggaaagacc
      781 tgcgcccgat ggggcaggga agtacggaca tgtgtggggc ggccatggtg cgcatggcgc
      841 accctacatg catgatccgg tagggtgcgc cgcgcgcacc caactcagca cgcctagctc
      901 agcacacctg actccggccc acacccttcg cgccgactag agcggctgct cccctgcccc
      961 ctccatctgc tgcgccagct gctgctcgcc ctccaggcga tgggcgcgca ggtggggcag
     1021 cacggcggcc agcagcggtt ccttgtaggc cgactggaag cgatgggcca ggcccgggat
     1081 cagccgcagc tcgctatcct ttatatgagc ggccacgtgc acgccatgca tcaccggcag
     1141 cagcgggtcg gcggtgccgt gtaccaccag ggtcggcacc ttcaggcggt tgagcagctc
     1201 cacccggctc ggctcggcca gtatcgccag gatctgccgc tgcacaccca ggggattgaa
     1261 cgcgcggtcg tagctgagct ccgcctcggc cagcagctgc gcgcggtcca cggccaggct
     1321 gggattgccg agggcggcca gcagatcggc ctgctgctcg atggcgccgg cacggtccgg
     1381 ggcctcgcgc cgcgccagct ggtgcagcag gcgcgggtcc ggcgccggca agcccggcgc
     1441 gctggagctg gtcatcacca gggtcaggct ctccacccgc cgcggcgcca ggtccgccat
     1501 gtgctgggcg atcatcccgc ccatgctggc gccgagcacg tggaactggc ggatgccgag
     1561 cgtatccatc aggcccagcg cgtcgccggc catgtcacgc agcgtataag gagcgctggc
     1621 gcccaggccg agctggtagc tgagcagctc gtagctcatg ttcaccgacg gcgcctcgcc
     1681 gctccaggcg gacagaccga cgtcgcgatt gtcgaagcgg atcacccgaa agccctgctc
     1741 gcacaggctg gcgaccacct cgtccggcca atggatcagt tggccaccga ggcccatcac
     1801 cagcagcagg gccgggtcgt cggcgcgacc gatgctctgg taggccaggc gcacctcgcc
     1861 caagtccgcc gtggcggtcg gcacctgaac gtcgcatcga ttcgccgcca atgacggcat
     1921 gccgcacacg agcgcggcga ggaagagaaa aactcgcatc gcaatatccg aaaaacgcaa
     1981 aaccccagtg gaacgcgagt ctgcggacat tcgttcgcgg gcgctgccac aactcgatga
     2041 caatttgatg aagggcgccg aacggttgtg acc
//
LOCUS       DATIHC010000215         2403 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_14378, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000215 DATIHC010000000
VERSION     DATIHC010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14378"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1108
                     /gene="glnS"
                     /locus_tag="VLF16_03425"
     CDS             <1..1108
                     /gene="glnS"
                     /locus_tag="VLF16_03425"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004819 - glutamine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006425 - glutaminyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HSX69960.1"
                     /translation="RDPILYRIRHAHHHQTGDKWCIYPSYDFTHGQSDALEGITHSIC
                     TLEFEDHRPLYEWFLANLPVPAQPRQYEFARLNLNYTITSKRKLKQLVDEQHVAGWDD
                     PRMSTLSGYRRRGYTPASIRTFCDMIGVNRAGGVVDIGMLEFAIREDLDANAARAMCV
                     LKPLKVVITNYPEGKVENLELPRHPKQDMGVRVLPFSREIYIDASDFEETPPDGFKRL
                     IPGGEVRLRGSYVIRADEAIKDAAGDIVELRCSYDENTLGKNPEGRKVKGVIHWVPAA
                     ESVECEVRLYDRLFRSANPEKSEEGGSFLDNINPDSLVVLQGCRAEPSLANAAPEERF
                     QFEREGYFVADLKDSQPGKPVFNRTVTLRDSWGQ"
     gene            1109..>2403
                     /gene="cysS"
                     /locus_tag="VLF16_03430"
     CDS             1109..>2403
                     /gene="cysS"
                     /locus_tag="VLF16_03430"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HSX69961.1"
                     /translation="MALSIYNTLSKTKDVFQPLEGNQVRMYVCGMTVYDFCHIGHARV
                     MVAFDVVTRWLRARGFDVTYVRNITDIDDKIIKRAQENGEPFEALVDRMIAAMHEDEA
                     RLSVLRPDIEPRATGHIAGMHQMIQTLIDKGFAYAPGNGDVYYRVGKFVGYGKLSRRK
                     IDELKIGARIEVDEIKEDPLDFVLWKGAKPGEPSWESPWGKGRPGWHIECSVMSTCCL
                     GETFDIHGGGPDLVFPHHENEIAQSEAATGKLYANAWMHAGAVRVDGEKMSKSLGNFF
                     TIREVLEKYHPEVVRYLLVSSHFRSPINYSEDSLKEAKGALERFYNGLKGLPEAPAAG
                     GEAFIERFGAAMDDDFNSPEACAVLFEMIREVNRLRESDVQAAAGLAAQLKQLAGVLG
                     VLQLEPDAFLQAGAAGKVDAAEVEALIAARLQARADKNWA"
BASE COUNT          452 a          837 c          757 g          357 t
ORIGIN      
        1 gcgcgacccg atcctctacc gcatccgcca cgcccatcac caccagaccg gcgacaagtg
       61 gtgcatctac ccgagctacg acttcaccca cggccaatcg gacgccctcg agggcatcac
      121 ccactccatc tgcaccctgg agttcgagga ccatcgcccg ctgtacgagt ggttcctggc
      181 caacctgccg gtgccggcgc agccgcgcca gtacgaattc gcccgcctca acctgaacta
      241 caccatcacc agcaagcgca agctcaagca gctggtcgat gagcagcacg tggccggctg
      301 ggacgacccg cgcatgtcga ccctctccgg ctaccgtcgc cgcggctata ccccggcctc
      361 gatccgcacc ttctgcgaca tgatcggcgt caaccgcgcc ggcggcgtgg tggacatcgg
      421 catgctggaa ttcgccattc gcgaggacct ggacgccaat gccgcccgcg ccatgtgcgt
      481 gctcaagccg ctcaaggtgg tgatcaccaa ctacccggaa ggtaaggtcg agaacctcga
      541 actgccgcgc cacccgaagc aggacatggg cgtgcgcgtg ctgccgttca gccgcgagat
      601 ctacatcgac gccagcgact tcgaagaaac cccgccggac ggcttcaagc gcctgatccc
      661 aggcggcgaa gtgcgcctgc gcggcagcta cgtgattcgt gccgacgagg cgatcaagga
      721 cgccgccggc gacatcgtcg agctgcgctg ctcctacgac gaaaacaccc tgggcaagaa
      781 cccggaaggc cgcaaggtca agggcgtgat tcactgggtg ccggccgccg agagcgtcga
      841 gtgcgaagtg cgcctgtacg accgcctgtt ccgctccgcc aatccggaga agagcgagga
      901 gggcggcagc ttcctcgaca acatcaaccc ggattcgctg gttgttctgc agggctgccg
      961 cgccgagccg tcgctggcca atgccgcgcc ggaagagcgc ttccagttcg agcgcgaggg
     1021 ctacttcgtc gccgacctga aggactcgca gcccggcaag ccggtgttca accgcaccgt
     1081 caccctgcgc gattcctggg gtcagtaaat ggcactctcc atctacaaca ccctctccaa
     1141 gaccaaggac gtcttccagc cgctggaagg caaccaggtg cgcatgtacg tgtgcggcat
     1201 gaccgtgtac gacttctgcc acatcggcca cgcccgcgtg atggtcgcct tcgacgtggt
     1261 cacccgctgg ctgcgcgcgc gcggctttga tgtgacctac gtgcgcaaca tcaccgacat
     1321 cgacgacaag atcatcaagc gcgcccagga gaacggtgag ccgttcgagg ccctggtgga
     1381 tcgcatgatc gccgccatgc acgaggacga ggcgcgcctg tccgtgctgc gcccggacat
     1441 cgagccgcgc gccaccggcc atatcgccgg catgcaccag atgatccaga ccctgatcga
     1501 caagggcttc gcctacgccc cgggcaatgg cgacgtgtac taccgcgtcg gcaagttcgt
     1561 cggctacggc aagctgtcgc gccgcaagat cgacgagctg aagatcggcg cgcgcatcga
     1621 ggtcgacgag atcaaggaag acccgctgga cttcgtgctg tggaaaggcg ccaagccggg
     1681 cgagccgagc tgggagtcgc cctggggcaa gggccgtccg ggctggcaca tcgagtgctc
     1741 ggtgatgtcc acctgctgcc tgggcgagac cttcgacatc cacggcggcg gcccggacct
     1801 ggtgttcccg caccacgaaa acgaaatcgc gcagagcgag gccgccaccg gcaagctcta
     1861 cgccaacgcc tggatgcacg ccggcgcggt gcgcgtggac ggcgagaaga tgtccaagag
     1921 cctgggcaac ttcttcacca tccgcgaggt gctggagaag taccaccccg aggtggtgcg
     1981 ctacctgctg gtgtccagcc acttccgcag cccgatcaac tactccgaag acagcctcaa
     2041 ggaagccaag ggcgccctgg agcgcttcta caacggcttg aaaggcctgc cggaagcgcc
     2101 ggctgccggt ggcgaagcct tcatcgagcg cttcggcgcg gcgatggacg acgacttcaa
     2161 ctcgccggaa gcctgcgccg tgctgttcga gatgatccgt gaggtcaacc gcctgcgtga
     2221 gtcggacgta caggccgccg ccggtctggc cgcccagctc aagcaactgg ctggcgtgct
     2281 cggcgtgctg cagctggagc cggacgcctt cctccaggcc ggcgccgccg gcaaggtcga
     2341 cgccgccgaa gtcgaggcgc tgatcgccgc gcgcctgcag gcccgcgccg acaagaactg
     2401 ggc
//
LOCUS       DATIHC010000216         2919 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_40335, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000216 DATIHC010000000
VERSION     DATIHC010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2919
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40335"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..337)
                     /locus_tag="VLF16_03435"
     CDS             complement(<1..337)
                     /locus_tag="VLF16_03435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008372504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69962.1"
                     /translation="MYFTERDIDRILENLDGLRERVFPRLHGDDGLDARHAQHFPSVC
                     LIGLGRCGSNIALDVASLVYNARRFYLNEFSSQEKNGEQRPASWIRSNLRLSSGRGAK
                     PVFLIEPLVM"
     gene            842..2002
                     /locus_tag="VLF16_03440"
     CDS             842..2002
                     /locus_tag="VLF16_03440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSX69963.1"
                     /translation="MKSVSRAMLMLALVLAAINLRPGITSFAPLIERIAEELSLSRGL
                     ISLTTALPVLCMGLLAPLAPRLAVRFGLERTITCCLGLIALALLLRMGGHLGPLLIGS
                     AALLGTGIAVAGPLLSGFIKRHFRDQVGKVVGWYSFSMAIGGAGGAVLTVPLTRGLGD
                     DWAFGLAAWCVPALLALLLWLRLPNRAEQALADDGQGLPWREPRAWLVTGFFAIQAGF
                     FYTMATWLVARYHEAGLSLLYSNGLFSLFMLVGLPSSWLLPWLAQRFDIRQPLLVACG
                     LTLTLCLSMITFQPTLLPEVWAVLMGFALSGSFALSLVLPLYEVHTPLAVSRWTAMML
                     CAGYCMACLAPILAGLGRDLAGNYQTPFMVLIFLGALMTLIAWALRTPRQPR"
     gene            2234..2662
                     /locus_tag="VLF16_03445"
     CDS             2234..2662
                     /locus_tag="VLF16_03445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004423434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69964.1"
                     /translation="MESESIVYGCIRDWPSGDREQHQLRRGSNRRVLEQLPRDDAWPF
                     LGREMFSFCGHEGQGLYQTQVIHFGASYQAIEYEWALWVKEFEALLQRLYWASAVVHL
                     ETELNGLHTFRWESESGFHSPQEGDLRMRCVWEREGGVRG"
     gene            complement(2668..2898)
                     /locus_tag="VLF16_03450"
     CDS             complement(2668..2898)
                     /locus_tag="VLF16_03450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheU family protein"
                     /protein_id="HSX69965.1"
                     /translation="MLIPHHMLEADTLVRLLEDFVTREGTDNGDDTPLEIRVERARRA
                     LEKGQAVIVFDPDSQQCQLALRDEVPKEWLAD"
BASE COUNT          407 a          923 c          990 g          599 t
ORIGIN      
        1 gcatcaccag tggctcgatc aggaacaccg gctttgcacc acgcccggag gacaggcgca
       61 ggttgctgcg aatccagctg gccgggcgct gttcgccatt cttctcctgc gagctgaatt
      121 cgttgaggta gaagcgccgc gcgttataga ccagcgaggc gacgtccagg gcgatgttgg
      181 agccgcagcg gccgaggccg atcaggcaca ccgacggaaa gtgctgggcg tggcgcgcgt
      241 cgaggccgtc gtcgccatgc agcctgggaa acacgcgttc gcgcaggccg tcgaggttct
      301 cgaggatgcg gtcgatgtcg cgctcggtga aatacatgta ctgctcgccg ggcactggca
      361 acggcgggtg agacaccggc gccgacggct cgggtgcggc aatggtgcgg ggttcggaaa
      421 cggtggaatc agcgtcttta gttgttttca tcgtcgacat tccatggcgg ctggcagcag
      481 tttttattag taatggggtg ctgttacata ggcagcacta tatacagcga cttgccgttg
      541 ttcgaggtcg atgaaatgtc tttttcatgt ctgaaagccc catgggtact gggctgcgac
      601 ggttccatga cgaagcgctg ggcgacgctt cgggctactg cggatatgtc ggctttccgt
      661 cgcgacatgg aacattcgcg gcgagatgtg gtgccgtttt aatgcgacag gacatcggtt
      721 tgaaaggctg taattacctg cctgtgcggt caaattattc cccggcaacg cttgctcgcc
      781 ttgagggtcg agggtagggt gactgccccg accggcgagg tcgtcatgtc gttgaaatca
      841 cgtgaaatcc gtatccaggg ccatgctgat gctggcgttg gtgctggcgg cgatcaacct
      901 gcgccccggc atcacttcct ttgccccgct gatcgagcgt atcgccgaag agctttccct
      961 tagccgcggc ctgatcagcc tgaccaccgc cttgcccgtg ctctgcatgg gcctgctggc
     1021 gccgctggcg ccgcgcctgg ccgtgcgttt cgggctggag cgcaccatca cctgttgcct
     1081 ggggctgatc gcgctggcgt tgctgttgcg tatgggcggc catctcggcc cgctgctgat
     1141 cggcagcgcc gcgctgctcg gcaccggcat cgccgtggcg gggccgttgc tgtcgggctt
     1201 catcaagcgc catttccgcg accaggtcgg caaggtggtc ggctggtatt ccttcagcat
     1261 ggccatcggc ggcgccggcg gtgccgtgct cacggtgcca ctgacgcgtg gcctgggcga
     1321 cgactgggcc ttcggtctgg ccgcctggtg cgtccccgcg ttgctcgcgc tgctgctctg
     1381 gctgcgcctg cccaaccgcg ccgagcaggc gttggccgac gacggccagg gcctgccgtg
     1441 gcgtgaaccg cgggcctggc tggtgaccgg cttcttcgcc atccaggccg gtttcttcta
     1501 caccatggcc acctggctgg tggcgcgcta ccacgaggcc ggcctgagcc tgctgtacag
     1561 caacggtctg ttcagcctgt tcatgctggt cggcctgccc agctcctggc tgctgccctg
     1621 gctggcccag cgcttcgaca tccgccagcc gctgctggtg gcctgcgggc tgaccctgac
     1681 cctgtgcctg agcatgatca ccttccagcc caccttgctg ccggaggtct gggcagtgct
     1741 gatgggcttc gccctcagcg gctccttcgc tctgtccctg gtgctgccgt tgtacgaggt
     1801 gcacacgccg ctggccgtca gccgctggac cgcgatgatg ctctgcgcag gctattgcat
     1861 ggcctgcctg gcgccgatcc tggcgggcct cggccgcgac ctggccggca actatcagac
     1921 gccgttcatg gtgctgatct tcctgggcgc gttgatgacc ctgatcgcct gggcgctgcg
     1981 aacgccgcgt cagcctcgct agcccagccg ctggcacgcg accgctcgcc gtcatcggcc
     2041 atgccgggcc atagggtgcg ctgcgcgcac cgagtcccag cgccgacgcg gcagatgcac
     2101 aggcgggaca cgcgcggtgc gacctggggc ttcggcattg cctgctgggg ttttatcgca
     2161 gacggggcgc tgattccttt gcatcggcca ggccctgtgt tagaaggctg cctgcacttt
     2221 ctggagtacc cgcgtggagt ccgaatccat cgtctatggc tgcatccgcg actggccttc
     2281 cggcgaccgc gagcaacatc agctgcgccg tggtagtaat cgccgggtgc tggagcaatt
     2341 gccccgggat gacgcctggc cgttcctcgg ccgtgagatg ttttccttct gcggccacga
     2401 agggcagggc ctgtaccaga cccaggtgat ccacttcggc gccagctacc aggccatcga
     2461 gtacgagtgg gctttgtggg tcaaggagtt cgaggcgctg ctgcagcgtc tgtactgggc
     2521 cagtgcggtg gtgcatctgg agaccgaact gaacggcctg cacaccttcc gctgggagtc
     2581 cgagagcggc ttccacagcc cccaggaagg cgacctgcgc atgcggtgcg tgtgggagcg
     2641 cgagggcggc gtgcgcggct gaggccgtta gtccgccagc cactccttcg gtacttcgtc
     2701 gcgcagggcc agctgacact gctggctgtc cgggtcgaag acgatcaccg cctgtccctt
     2761 ctccagcgcc cgccgtgccc gttcgacgcg gatttccagc ggcgtgtcgt cgccgttgtc
     2821 ggtgccttcg cgggtgacga agtcctcgag caggcgtacg agggtatcgg cttcgagcat
     2881 gtggtgcggg atcagcatgg cggcttctag ggtctgttg
//
LOCUS       DATIHC010000217         2293 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_44636, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000217 DATIHC010000000
VERSION     DATIHC010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2293
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44636"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            175..1386
                     /gene="sstT"
                     /locus_tag="VLF16_03455"
     CDS             175..1386
                     /gene="sstT"
                     /locus_tag="VLF16_03455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003247053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0015826 - threonine transport [Evidence
                     IEA];
                     GO_process: GO:0032329 - serine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HSX69966.1"
                     /translation="MILRPFLALLNRTSLVLQIAIGLIAGILLALLLPQATDEVGFLG
                     SLFISALKAVAPVLVFILVASAIANHTPGQPTHIRPILVLYLVGTLSAAIVAVVASSL
                     WPSTLVLQDAATGTTPPGGIAEVLKTLALNVVDNPVNALLNGNFIGILAWAIGLGIAI
                     RHGSESTRAMFTDLAHGVTLIVRVVIRCAPLGVFGLVATTFADAGLSALAGYAHLLIV
                     LIGCMLFVALVVNPLIVFSQIRRNPYPLVFTCLRESGMTAFFTRSSAANVPVNLQLAE
                     RLGLHEDTYSVSIPLGATINMAGAAITISVLTLAAANTLGVDVDMPTAILLCVVSAVC
                     ACGASGVAGGSLLLIPLACSLFGIPSEVAMQVVAIGFIIGILQDSAETALNSSTDVLF
                     TAAACLARDKD"
     gene            1481..1996
                     /locus_tag="VLF16_03460"
     CDS             1481..1996
                     /locus_tag="VLF16_03460"
                     /inference="COORDINATES: protein motif:HMM:NF016214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HSX69967.1"
                     /translation="MFIAHVPSGYLLGVLLQRLQRRPALSRPVLPACMLGATVPDLDL
                     FYFYLVDGRQTHHHQYFSHWPSLWLGLTILAGLWLSLRRDSTGAAMTLAFALGGMLHM
                     LLDSFVGDIWWLAPLPGQPFALFGVPTLHQPWWLNFLLHWTFVAELAICAAALLVYRI
                     RRGHRQTERRP"
     gene            1993..>2293
                     /locus_tag="VLF16_03465"
     CDS             1993..>2293
                     /locus_tag="VLF16_03465"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HSX69968.1"
                     /translation="MTALCLAAAQTLSQPGDLPANIERHCAFVHTAAAAGVELLLFPE
                     LSLSGYEPERVAGCVVDPAGPLLAPLRALAQRHRMTLVLGAPLASANERPHIGAIV"
BASE COUNT          308 a          888 c          681 g          416 t
ORIGIN      
        1 accgcacacc cgtcgatgga tggccgacag ccaccccgtt tggcctatag aatcgccgcc
       61 ttcttttctg cgcctatcgt tatccgagag gcctccggaa accggccgcc acgaggcgac
      121 cgcccgcaga tcgcgcccac aggcgcggcc tgccgaatca caggaaccac aaccatgatc
      181 cttcgcccct tcctagcgct gctcaaccgc accagcctgg tcctgcagat cgccatcggc
      241 ctgatcgccg gcatcctcct cgccctgctg ctgccccagg ccaccgacga ggtcggcttc
      301 ctcggtagcc tgttcatctc cgcgctcaag gccgtggcgc cggtgctggt gttcatcctg
      361 gtggcctcgg ccatcgccaa ccacacaccg ggccagccca cccacatccg cccgatcctg
      421 gtgctgtacc tggtcggcac cctgtccgcc gccatcgtcg cggtggtcgc cagcagcctg
      481 tggccctcga ccctggtgct gcaggacgcc gcgaccggca ccacgccgcc cggcggcatc
      541 gccgaagtgc tgaagaccct ggcgctgaac gtggtcgaca acccggtcaa cgccctgctc
      601 aacggcaact tcatcggcat cctggcctgg gccatcggcc tgggcatcgc cattcgccac
      661 ggcagcgaaa gcacccgcgc gatgttcacc gacctggccc atggcgtgac cctgatcgtg
      721 cgcgtggtga tccgctgcgc gcctctcggt gtgttcggcc tggtcgccac caccttcgcc
      781 gacgccggcc tcagcgccct cgccggctat gctcacctgc ttatcgtgct gatcggctgc
      841 atgctgttcg tggcgctggt ggtcaacccg ctgatcgtct tcagccagat ccgccgcaac
      901 ccctaccccc tggtgttcac ctgcctgcgc gagagcggca tgaccgcgtt cttcacccgc
      961 agctcggcgg ccaacgtacc ggtcaacctg cagctggccg agcgcctggg cctgcacgag
     1021 gacacctact cggtatccat cccgctgggc gccaccatca acatggccgg cgcggccatc
     1081 accatcagcg tgctgaccct ggccgcggcg aataccctgg gcgtcgacgt cgacatgccg
     1141 accgcgatcc tgctctgcgt cgtttcggcg gtgtgcgcct gcggcgcctc cggcgtggcc
     1201 ggcggctcgc tgctgctgat cccgctggcc tgcagcctgt tcggcatccc cagcgaagtc
     1261 gccatgcagg tggtggccat cggcttcatc atcggcatcc tgcaggacag cgcggaaacc
     1321 gccctgaact cctccaccga cgtgctgttc accgccgccg cctgcctggc gcgggacaag
     1381 gactgagaac aggtcgccgc agaagccgcc tgcgggcggc tttcttttgc cggtgaatgg
     1441 ggttatctgt ttagcgccac gctcaaggag gagccttcag atgttcattg cccacgtccc
     1501 ttccggctat ctgctcggtg tcttgctgca gcgcctgcag cggcggccgg cgctatcccg
     1561 ccctgtcctg ccggcctgca tgctcggcgc cacggtgccc gatctggacc tcttctactt
     1621 ctacctggtg gacgggcgcc agacccacca ccatcagtac ttcagccact ggccctcgct
     1681 gtggctcggc ctgaccatcc tggccggcct ctggctcagc ctccggcgcg acagcaccgg
     1741 cgccgccatg acgctggcct ttgccctggg cggcatgctg cacatgctgc tggacagttt
     1801 cgtcggcgac atctggtggc tggcgccttt accgggtcag ccgttcgccc tcttcggcgt
     1861 gccgaccctt caccagccct ggtggctcaa cttcctgctg cactggactt tcgtcgccga
     1921 gctggcgatc tgcgcggccg cgctgctggt gtaccgcatc cgcagaggcc accggcaaac
     1981 ggagcgccgc ccatgaccgc actctgcctg gccgcggccc agaccctgtc ccagcccggt
     2041 gatctgcccg ccaatatcga gcgccactgc gccttcgtcc acacggccgc cgccgcaggc
     2101 gtggagctgt tgctgtttcc cgagctgtcg ctgagcggct acgagcccga gcgggtcgcc
     2161 ggctgcgtgg tcgacccggc aggtcccctc ctcgcgcccc tgcgagcctt ggcgcagcgg
     2221 catcggatga ccctggtgct cggcgccccg ctggccagcg ccaacgagcg tccgcatatc
     2281 ggcgccatcg tac
//
LOCUS       DATIHC010000218         1507 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7590, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000218 DATIHC010000000
VERSION     DATIHC010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1507
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7590"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..661)
                     /locus_tag="VLF16_03470"
     CDS             complement(<1..661)
                     /locus_tag="VLF16_03470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HSX69969.1"
                     /translation="MSLPNTETLLLEQVEGVLYVTLNRPESRNAMSLAMVEELRAVLR
                     AVRADQAVRALVLRGADGHFCAGGDIKDMAGARAKGGDAYRELNRAFGSLLEEAQAAP
                     QVLVAVLEGAVLGGGFGLACVSDIAIAHQGAKFGLPETSLGILPAQIAPFVVKRIGLT
                     QARRLALTAARFDGAEALRLGLVHFSEADDQAVVDRLAECLQQIRQCAPGANAATKAL
                     LL"
     gene            complement(773..>1507)
                     /gene="atuD"
                     /locus_tag="VLF16_03475"
     CDS             complement(773..>1507)
                     /gene="atuD"
                     /locus_tag="VLF16_03475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citronellyl-CoA dehydrogenase"
                     /protein_id="HSX69970.1"
                     /translation="RKDGDDYVINGSKMWITNSPSADFICLLANTSDDKPHVNKSLIV
                     VPMNTPGITLSPHLDKLGMRSSETAQVFFDNVRVPQRNRIGAEGAGFMMQMLQFQEER
                     MFGAANMIKGLEYCVDSTIEYCKQRHTFGQPLIDNQVIHFRMAELQSEIEALRALVYH
                     ATELYVKGKDVTKLASMAKLKAGRLGREVTDSCLQYWGGMGFMWDNPVSRAYRDVRLV
                     SIGGGADEIMLGIICKLMGILPGKKK"
BASE COUNT          228 a          487 c          514 g          278 t
ORIGIN      
        1 ccagcagcag cgccttggtc gccgcattgg cgccgggggc gcactggcgg atctgctgca
       61 ggcactcggc gaggcggtcg accacggcct ggtcgtcggc ttcgctgaag tgcaccaggc
      121 ccaggcgcag ggcctcggca ccgtcgaagc gggccgcggt cagggccagg cgacgggctt
      181 gggtcaggcc gatgcgcttg accacgaacg gcgcgatctg cgccggcaga atgcccaggc
      241 tggtttccgg caggccgaac ttggcgccct ggtgggcgat ggcgatatcg gacacgcagg
      301 ccaggccgaa accgccgccg agcaccgcgc cttccagcac ggcgaccagt acctgcggcg
      361 cggcctgggc ctcttccagc aggctgccga aggcgcggtt cagctcgcgg taggcgtcgc
      421 cccccttggc ccgcgcaccg gccatgtcct tgatgtcgcc gccggcgcag aagtggccgt
      481 cggcaccgcg cagtaccagg gcgcgcacgg cctggtcggc acgcaccgcg cgcagcacgg
      541 cgcgcagttc ctcgaccatc gccaggctca tggcgttgcg gctttccggg cggttgaggg
      601 tgacgtagag cacgccctcg acctgttcca gcagcagggt ttccgtgttt ggtagagaca
      661 tcgttatcgc tccattgccg tagtgcctac ggcctcagcc attcttatgg cccgccatcc
      721 ctggcggcca cccttcgggc cgtcgctacg cgacgttaaa aatagctcca ggctattttt
      781 tcttgccggg cagaatgccc atcagcttgc agatgatgcc gagcatgatt tcgtcggcgc
      841 cgccgccaat ggagaccagg cgcacatcgc gatacgcacg ggaaacgggg ttgtcccaca
      901 tgaagcccat gccgccccag tactgcaggc agctgtcggt gacttcgcgg cccaggcggc
      961 cggccttgag cttggccatg gaggccagct tggtgacgtc cttgcctttc acgtacagct
     1021 cggtggcgtg gtagacgagg gcgcgcaggg cttcgatctc gctctgcagc tcggccatgc
     1081 ggaagtggat gacctggttg tcgatcagcg gctggccgaa ggtgtggcgc tgcttgcagt
     1141 actcgatggt ggaatcgacg cagtactcca ggcccttgat catgttggcc gcgccgaaca
     1201 tgcgttcttc ctggaactgc agcatctgca tcatgaagcc cgcgccttcc gcgccgatgc
     1261 ggttgcgctg cggcacgcgc acgttgtcga agaacacctg ggcggtctcc gagctgcgca
     1321 tgccgagctt gtccaggtgc gggctgaggg tgatgcccgg ggtgttcatc ggcaccacga
     1381 tcagcgactt gttgacgtgg ggcttgtcgt cgctggtgtt ggccagcagg cagatgaagt
     1441 cggcagacgg cgagttggtg atccacatct tgctgccgtt gatcacgtag tcgtcgccgt
     1501 ccttgcg
//
LOCUS       DATIHC010000219         2208 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33311, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000219 DATIHC010000000
VERSION     DATIHC010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2208
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33311"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..316
                     /gene="gyrB"
                     /locus_tag="VLF16_03480"
     CDS             <1..316
                     /gene="gyrB"
                     /locus_tag="VLF16_03480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002551319.1"
                     /note="negatively supercoils closed circular
                     double-stranded DNA; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA gyrase subunit B"
                     /protein_id="HSX69971.1"
                     /translation="LEDGAYVQRGERKKPVSTFKEAFEWLKVESTKRHSIQRYKGLGE
                     MNPEQLWETTMDPNVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRDFIESNALAVSNL
                     DF"
     gene            complement(585..1517)
                     /locus_tag="VLF16_03485"
     CDS             complement(585..1517)
                     /locus_tag="VLF16_03485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008094200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HSX69972.1"
                     /translation="MDRNTILLFAGIGAVLLLATLIARILRHRAGDAPNAVIDNLNAR
                     IDAWWVMVLVIGIAFLFGNNGVVLLFYFVSFYALREFLTLTPTRRSDYPALVAAFYFA
                     LPMQYLLIALDWYGLFAIFIPVYLFLLLPILASLAGDTTRFLERASEVQWGLMIAVYC
                     VSAVPALLTLDIPGYEGRNLLLIAWLIIVVQLSDVLQYVCGKLAGKHKIAPNLSPSKT
                     VEGFVGGVALASLIGASLFWITPFSFWQAALMALTVNLLGFAGGLVMSAIKRDRGVKD
                     WGHMIEGHGGMLDRMDSVCFAAPIFFHFVRYWWA"
     gene            complement(1519..2142)
                     /locus_tag="VLF16_03490"
     CDS             complement(1519..2142)
                     /locus_tag="VLF16_03490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009401616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HSX69973.1"
                     /translation="MLASLTAFAITSAARLLTGARALWLGCTAQPVQRLYYANHSSHG
                     DFVLLWASLPPELRRRTRPVAGSDYWMKGDLRRFLIRDVFNGVLVDRDRSDPNANPLQ
                     PMLDALEQGDSLIIFPEGTRNLTDEQLLPFKSGLFHLAQARSEVELVPVWIANLNRVM
                     PKGKALPLPLLCTLSFGAPLERLDGEDKAAFLERARNALLALAPEIV"
BASE COUNT          467 a          657 c          746 g          338 t
ORIGIN      
        1 gctggaagac ggcgcctacg tgcagcgagg cgagcgcaag aagccggttt cgaccttcaa
       61 agaggcgttc gaatggctga aggtggagag caccaagcgc cacagcatcc agcgctataa
      121 ggggctcggc gagatgaacc cggagcagct gtgggaaacc accatggacc cgaacgtgcg
      181 ccgcatgctc aaggtgacca tcgaggacgc gattgccgcc gaccagatct tcaataccct
      241 gatgggtgac gccgtggagc cgcgccgcga cttcatcgag tcgaatgccc tggcggtgtc
      301 gaacctggac ttctagtttc ggcagccgtt tcgtagaaag aagcaccccg gcttaggccg
      361 gggtttttat tggtcggcgc caatggtcaa aagcttacac gccgaagcgg gatgtacgtc
      421 tgccggcggc ccatgtgcat ggctactcta cacacacctg ccgggaactg gatgttcccg
      481 ggtcaaggaa gacagaccgc gccaggatgg caaacgacag gatgtcggaa ggtcataaag
      541 aacccgcctc ggcgggtttt ttgttgcctg cgaaaaagtg ggcttcaagc ccaccagtaa
      601 cgcacgaagt ggaagaagat cggcgcggcg aagcacaccg agtccatgcg atcgagcatg
      661 ccgccgtggc cttcgatcat gtggccccag tccttcaccc cacggtcgcg cttgatcgcc
      721 gacatcacca ggccaccggc gaagccgagc aggttcacgg tcagggccat cagcgcggcc
      781 tgccagaagc tgaacggggt gatccagaac agcgaggcgc cgatcaggct ggccagcgcc
      841 acaccaccga cgaagccctc caccgtcttc gatggcgaca gattgggcgc gatcttgtgc
      901 ttgccggcca gcttgccaca gacgtactgc agcacatccg acagctgcac cacgatgatc
      961 agccaggcga tcagcagcag gttacggccc tcgtagccgg ggatgtccag ggtgagcagc
     1021 gccggtacgg cggatacgca gtacaccgcg atcatcagcc cccactgcac ctccgaggcg
     1081 cgttcgagga agcgcgtggt gtcgccggcc agcgaggcga ggatcggcag caggaggaac
     1141 aggtagaccg ggatgaagat ggcgaacagg ccgtaccagt ccagggcgat cagcaggtac
     1201 tgcatcggca gcgcgaaata gaaggccgcc accagggccg ggtagtcgct gcgccgggtc
     1261 ggcgtcaggg tgagaaattc gcgtagggcg tagaacgaca cgaagtagaa cagcaagacc
     1321 acgccgttgt tgccgaacag gaaggcgatg ccgatgacca gcaccatgac ccaccaggcg
     1381 tcgattcgcg cattgaggtt gtcgatcacc gcattgggcg cgtcaccggc tcgatggcgc
     1441 aggatgcggg cgatcagggt ggccagcagc agtacggcac cgataccggc gaacagcagg
     1501 attgtgttgc gatccatatc agacgatctc cggggccagg gccagcaggg cgttacgtgc
     1561 acgttcgagg aaggccgcct tgtcttcgcc gtcgaggcgc tccagcggtg cgccgaagct
     1621 cagggtgcac agcagcggca acggcagcgc cttgcccttg ggcatcaccc ggttgaggtt
     1681 ggcgatccac accggcacca gttccacctc ggagcgtgct tgggccaggt ggaacaggcc
     1741 gctcttgaag ggcagcagct gttcgtcggt gagattgcgg gtgccctcgg ggaagatgat
     1801 cagcgagtcg ccttgctcca atgcgtcgag catcggctgc agcggattgg cattcggatc
     1861 gctgcggtcg cggtcgacca gcacgccatt gaacacgtcg cggatcaaaa agcgtcgcag
     1921 gtcgcccttc atccagtagt cggagccggc caccggccgg gtgcgccgac gcagctccgg
     1981 cggcagcgaa gcccagagca acacgaagtc gccgtggctg ctgtggttgg cgtagtacag
     2041 gcgctgtacc ggttgggccg tgcaacccag ccagagtgcg cgggcgccgg tcagcagacg
     2101 agccgccgaa gtgatggcga aggcggtgag cgatgcgagc atggatagga ctcctttatc
     2161 cagccagaga aagccagggc atggtgagaa tggcggccag ggcgagca
//
LOCUS       DATIHC010000220         5681 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_9966, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000220 DATIHC010000000
VERSION     DATIHC010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5681
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9966"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..714)
                     /locus_tag="VLF16_03495"
     CDS             complement(<1..714)
                     /locus_tag="VLF16_03495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004373187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HSX69974.1"
                     /translation="MNILTFDLNLLRVLDALLRERNVSRAAERLALSQPAVSNALNRL
                     RDLLDDPLLVRVGRAMQPTPRALELEAPIRAALRQIEESLGEGSRFEPTRSRQRFTIA
                     LTDYAEMLLMPRLLERLAEQAPGIRIDVRHLSPRLPAEALEKGEIDIALGRFEALPPR
                     FSGVRWMSETLQLVARRDHPQVRDGLTLDGFLRLRHLWVHGGQTRGMVEQWLGEHGLS
                     REIVYTTPNYLQAAHIAAGG"
     gene            810..2048
                     /locus_tag="VLF16_03500"
     CDS             810..2048
                     /locus_tag="VLF16_03500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010489507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HSX69975.1"
                     /translation="MSNNYKIEQAAVIGAGTMGRGIVISLANAGIPVLWLDNNPQMVE
                     AGLKMAEDTWAQNVAKGRISTGEASLRLARIQAVNDYADLAEVDLVIEAVYENLELKQ
                     EIFRTLDRTVKPGAILASNTSALDIDAIAAVTARPQDVLGLHFFSPAHIMKLLEIVRG
                     AHTAPAVLDAALALGQRIGKVSVVAGNCDGFIGNRMLHTYVFEARSMLLEGAYPYQVD
                     AALQGFGFAMGPFRMYDVVGIDLEWRARELAGEGQDAPQVQVDSRLCELGRFGQKSGK
                     GYYTYSPGSRQAEHDPVVDALVQREGERLGYARRTVGPEEILERCLLALVNEGAKILE
                     ENIAANAHDIDLVYLNGYGFPADKGGPMAWADAQGVAFIRERLLQLAERHGAHWQPAG
                     LIDRLVADVKKFADVQEGRV"
     gene            2045..3835
                     /locus_tag="VLF16_03505"
     CDS             2045..3835
                     /locus_tag="VLF16_03505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase C-terminal
                     domain-containing protein"
                     /protein_id="HSX69976.1"
                     /translation="MSYQAPLRDMRFVLHELFDVAGHCERLGNGLDRELIDGVLEEAA
                     AFTGNEIAPLNRNSDEEGCRLENGQVSTPKGFRAAYKQYVENGWASMTGPVDFGGQGF
                     PQLVSFAFHEMLMGASLSFRVYSGLTEGAVLALDKHGSDELKRDYLGKMVSGEWTGTM
                     CLTEPQAGTDLALLRTKAEPQADGSYKVTGNKIFISGGEQDMSENIVHLVLARLPDAP
                     AGVKGISLLLVPKFVANADGTPGAVNALSCGAIEHKMGIKGASTCVMNFDGATGWLVG
                     EANQGLACMFTMMNDARFQVGLQGLGLGEAAFQGALRYARERLQSRGLTGAAAPEKAA
                     DPIIVHPDVRRMLLTQKTLVEGCRMLAAYTARQLDLEHGADDAAARKAAAKRAALLIP
                     IVKAFFTDMGQESASHAVQVYGGHGFIREWGMEQLMRDSRITQLYEGTNGIQALDLIR
                     RKLLGDGGAELNALIDEFAAMTRDAAGQPALAEMAGVVEARLQQWRELAAQVIASSQQ
                     DAQEIGATSVDFLQYSAYVLLASFWLQAAATAQRALDAGTGEAAFYQAKLQSAAFYLR
                     RVLPRASSHREALLGGAACLMAMPEESFAF"
     gene            3952..4944
                     /locus_tag="VLF16_03510"
     CDS             3952..4944
                     /locus_tag="VLF16_03510"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHB depolymerase family esterase"
                     /protein_id="HSX69977.1"
                     /translation="MTTTRKVLIPLLLLVALLAGLYGYYLYAPRPEVPALSAALQEGR
                     IEVGGMPRDYAYYLPAGLPAGAPLLFVLHGSLQTRDDARTFSAYAFERLADEHGFIVV
                     YPQGYERNWNDCRSTADYPARTQNVDDVGLIAALIRRFADEHRADPRRAFLAGYSNGG
                     HLGLRIALERPQLLAGVAAVAANLPTPDNLACTAVAGATPVLFMNGTRDPINPYNGGR
                     VTLFGFGDRGTVRSAYESALFFAERAGYSASDVRREEAWRDAADPARRVDLDRWQAEG
                     RAEVALYGVIGGGHLLPQAGFRAPRLLGPTLSGFDGPRAIWDFFTRQRPTPAQP"
     gene            4963..>5681
                     /locus_tag="VLF16_03515"
     CDS             4963..>5681
                     /locus_tag="VLF16_03515"
                     /EC_number="1.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003303062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HSX69978.1"
                     /translation="MQPFSFATTAQILCESGSSTRLASLCQERGAQRVMLVTDPGITR
                     FGLLDGVLPGFAAAGLAVEVFDQVIADPPEAIVLNAVERARALGADLVVGFGGGSSMD
                     VAKLVALLAHPNCQQALKDIYGVGNARGQRLPLIQVPTTAGTGSEVTPISIVTTGETT
                     KMGVVSPLLLPDLALLDAELTLGLPPAVTAATGIDAMVHAIEAYTTKLKKNPLSDLLA
                     REALRLLAANLNEAVHNGQNR"
BASE COUNT          914 a         2084 c         1886 g          797 t
ORIGIN      
        1 accaccggcg gcgatgtgcg cggcctgcag gtagttcggc gtggtgtaga cgatctcgcg
       61 gctcaggccg tgttcaccca gccattgctc gaccatgccg cgggtctggc cgccatgcac
      121 ccagaggtgg cgcaggcgca gaaagccgtc cagggtcagg ccgtcgcgca cctgcggatg
      181 gtcgcggcgc gccaccagtt gcagggtctc gctcatccag cgcacgccgg aaaaacgggg
      241 cggcagcgcc tcgaagcgac ccagcgcgat gtcgatctcg cccttctcca gggcctcggc
      301 gggcaggcgc ggcgacaggt gacgcacgtc gatgcggatg cccggcgcct gctcggccag
      361 acgctccagc aggcgcggca tcagcagcat ctcggcgtag tcggtcagcg cgatggtgaa
      421 gcgctggcgg ctgcgcgtcg gttcgaagcg gctgccttcg cccaggctct cctcgatctg
      481 ccgcagtgcc gcgcgaattg gcgcctccag ctccagtgcc cgcggcgtcg gctgcatggc
      541 gcggccgacg cgcaccagta gcgggtcgtc gagcaggtcg cgcaggcgat tcagcgcatt
      601 gctcaccgcc ggctgactca gcgccagccg ctcggcggca cgcgatacgt tgcgctcgcg
      661 caacagggcg tccagcacgc gcagcaggtt gaggtcgaag gtcaatatat tcacgaggag
      721 aattctgctt atcacaagtc aaaatttccc aaatagtaca gccctcctta aggtgcgtca
      781 gttgtgtttt atgtgatcga gggaaggcta tgagcaacaa ctacaagatc gaacaggccg
      841 ccgtgatcgg tgccggcacc atgggccgcg gcatcgtcat cagcctggcc aacgccggca
      901 tccccgtgct gtggctggac aacaacccgc agatggtcga ggccggcctg aagatggccg
      961 aagacacctg ggcgcagaac gtcgccaagg gccgcatcag caccggcgag gccagcctgc
     1021 gcctggcgcg catccaggcg gtgaacgact acgccgacct ggccgaagtc gacctggtga
     1081 tcgaggccgt ctacgagaac ctcgaactca agcaggaaat cttccgcacc ctcgaccgca
     1141 ccgtgaagcc cggcgcgatc ctcgccagca acacctcggc gctggacatc gacgccatcg
     1201 ccgccgtcac cgcccgcccg caggatgtgc tcggcctgca cttcttcagc ccggcgcaca
     1261 tcatgaagct gctggagatc gtccgcggcg cgcacaccgc cccggccgtg ctcgacgccg
     1321 ccctggccct gggccagcgc atcggcaagg tcagtgtggt ggccggcaac tgcgacggct
     1381 tcatcggcaa ccgcatgctg cacacctacg tgttcgaggc gcgcagcatg ctcctcgagg
     1441 gcgcctatcc ctatcaggtg gacgcggccc tgcagggctt cggcttcgcc atgggtccgt
     1501 tccgcatgta cgacgtggtc ggcatcgacc tggaatggcg cgcccgcgag ctggccggcg
     1561 aaggccagga cgcgccccag gtacaggtgg acagccgcct gtgcgaactc ggccgcttcg
     1621 gccagaagtc cggcaagggc tactacacct actcgccggg cagccgccag gccgaacacg
     1681 acccggtggt agacgcgctg gtgcagcgcg agggcgagcg cctcggctat gcgcgccgca
     1741 ccgtcggccc cgaggaaatt ctcgagcgct gcctgctggc actggtcaac gagggcgcca
     1801 agatcctcga agaaaacatc gccgccaacg cccacgacat cgacctggtg tacctcaacg
     1861 gctacggctt ccccgccgac aagggcgggc cgatggcctg ggccgatgcc cagggcgtgg
     1921 ccttcatccg cgagcgcctg ctgcagctgg ccgagcgcca cggcgcgcac tggcagcccg
     1981 ccgggctgat cgaccgcctg gtggcggacg tcaagaaatt cgccgacgta caggagggcc
     2041 gcgtatgagc taccaggccc ccctgcgcga catgcgcttc gtgctgcacg aactgttcga
     2101 cgtcgccggc cactgcgagc gcctgggcaa cggcctggac cgcgagctga tcgacggcgt
     2161 gctggaagag gccgcggcct tcaccggcaa cgagatcgcc ccgctcaacc gcaacagcga
     2221 cgaggaaggc tgccgcctgg agaacggcca ggtcagcacg ccgaaaggtt tccgcgccgc
     2281 ctacaagcag tacgtcgaga acggctgggc gagcatgacc ggcccggtgg acttcggcgg
     2341 ccagggcttc ccgcagctgg tgtccttcgc cttccacgag atgctgatgg gcgcctcgct
     2401 gtccttccgc gtctactccg gcctcaccga aggcgcggta ttggcgctgg acaagcacgg
     2461 cagcgacgag ctcaagcgcg actacctggg caagatggtc agcggcgagt ggaccggcac
     2521 catgtgcctg acagagcccc aggccggcac cgacctggcc ctgctgcgca caaaggccga
     2581 gccgcaggcc gacggcagct acaaggtcac cggcaacaag atcttcatca gcggcggcga
     2641 acaggacatg tccgagaaca tcgtccacct ggtgctggcg cgcctgccgg acgccccggc
     2701 cggggtcaag ggcatcagcc tgctgctggt gccgaagttc gtcgccaatg ccgacggcac
     2761 gccgggcgcg gtcaacgccc tgtcctgcgg cgccatcgag cacaagatgg gcatcaaggg
     2821 tgcctccacc tgcgtgatga acttcgacgg cgccaccggc tggctggtcg gcgaggccaa
     2881 ccagggccta gcctgcatgt tcaccatgat gaacgacgcg cgcttccagg tcggcctgca
     2941 gggcctgggc ctgggcgagg cggccttcca gggcgccctg cgctatgccc gcgagcgcct
     3001 gcagtcgcgc ggcctgaccg gcgccgcggc gccggagaag gcggccgacc cgatcatcgt
     3061 gcacccggac gtgcggcgca tgctgctgac ccagaagacc ctggtcgaag gttgccgcat
     3121 gctcgccgcc tacaccgcgc gccagctcga cctggagcac ggggcggacg atgccgcggc
     3181 ccgcaaggcg gcggccaagc gcgccgcgct gctgatcccg atcgtcaagg cgttcttcac
     3241 cgacatgggc caggagtccg ccagccacgc cgtgcaggtg tatggcggcc acggcttcat
     3301 ccgcgagtgg ggcatggagc agctgatgcg cgacagccgc atcacccagc tctatgaagg
     3361 caccaacggc atccaggcgc tggacctgat ccgccgcaag ctgctgggcg acggcggcgc
     3421 cgaactcaac gccctgatcg acgagttcgc cgccatgacc cgcgacgctg ccgggcagcc
     3481 ggcgctggcc gagatggccg gcgtggtcga ggcgcgcctg caacaatggc gcgagctggc
     3541 ggcccaggtg atcgccagca gccagcagga cgcccaggaa atcggcgcca cctcggtgga
     3601 cttcctgcag tactcggcct atgtgttgct ggccagcttc tggctgcagg ccgccgccac
     3661 cgctcagcgc gcactggacg cgggcacggg cgaggcggcc ttctaccagg ccaagctgca
     3721 gagcgcggcg ttctacctgc gccgcgtgct gccgcgcgcc agcagccacc gcgaggccct
     3781 gctgggcggc gcggcgtgcc tgatggccat gccggaggag agcttcgcgt tctgaagaaa
     3841 cgggcggggc aatccccgcc ctgtcgcatt ccgtagggcg cgccgcgcgc accacgtccg
     3901 agcacacccg cctgagcggt acgcacggcg caccctgtcc gagaggcacg catgacaacg
     3961 acaagaaaag tgctgatccc gttactcctg ctggtcgccc tcctggccgg cctgtacggc
     4021 tattacctgt acgcacccag acccgaggtg cccgcgctga gcgcggccct gcaggagggt
     4081 cgcatcgaag tcggcggcat gccgcgcgac tacgcctatt acctcccggc cggcctgccg
     4141 gccggggctc cgctgctgtt cgtgctgcac ggctcgctgc agacgcgcga tgatgcgcgc
     4201 accttcagcg cctacgcatt cgagcgcctg gccgacgagc acggcttcat cgtcgtctat
     4261 ccccagggct acgagcgcaa ctggaacgac tgccgcagca ccgccgacta cccggcacgc
     4321 acgcagaacg tcgacgacgt cggcctgatc gccgcgctga tccggcgctt cgccgacgaa
     4381 caccgggccg acccgcgccg cgccttcctc gccggctact ccaatggtgg ccacctgggc
     4441 ctgcgcatcg ccctggagcg tccgcagctg ctggccgggg tcgccgccgt ggcggccaac
     4501 ctgccgacgc ccgacaacct ggcctgcacg gccgtggccg gagccacgcc ggtgctcttc
     4561 atgaacggca cccgcgaccc catcaacccc tacaacggcg gccgcgtcac cctgttcggc
     4621 ttcggcgacc gcggcaccgt gcgctcggcc tacgagtcgg cgctgttctt cgccgagcgc
     4681 gccggctaca gcgcgtcgga cgtgcgccgt gaggaggcct ggcgcgatgc cgccgacccc
     4741 gcccgccgcg tcgacctcga ccgctggcag gccgagggcc gcgccgaggt cgccctgtac
     4801 ggggtgatcg gcggcggcca tctgctgccg caggccggtt tccgcgcgcc acgcctgctc
     4861 ggcccgaccc tgtccggctt cgacggcccg cgcgccatct gggacttctt cacccgccag
     4921 cgcccgacgc cggcgcagcc ctgatcctta ggaggcattg ccatgcaacc cttcagcttc
     4981 gccaccaccg cgcagatcct ctgcgaatcc ggctccagca ctcgcctcgc cagcctctgc
     5041 caggaacgcg gcgcccagcg cgtgatgctg gtcaccgacc ccggcatcac ccgcttcggc
     5101 ctgctcgacg gcgtgctgcc gggcttcgcc gccgccggcc tggccgtgga ggtgttcgac
     5161 caggtgatcg ccgacccgcc cgaggccatc gtgctcaacg ccgtggagcg cgcccgcgcg
     5221 ctgggcgccg acctggtggt cggcttcggc ggcggcagct cgatggacgt ggccaagctg
     5281 gtcgccctgc tcgcccaccc caactgccag caggcgctga aggacatcta cggcgtgggc
     5341 aacgcccgcg gccaacgcct gccgctgatc caggtaccga ccaccgccgg caccggctcg
     5401 gaggtgacgc cgatctccat cgtcaccacc ggcgaaacca ccaagatggg cgtggtgtcg
     5461 ccgctgctgc tgccggacct ggcgctgctc gatgccgagc tgaccctcgg cctgccgccg
     5521 gcggtgaccg ccgccaccgg catcgacgcc atggtccacg ccatcgaggc ctacaccacc
     5581 aagctgaaga agaacccgct gtccgacctg ctggcccgcg aggccctgcg cctgctggcc
     5641 gccaacctga acgaggcggt gcacaacggg cagaaccgcg a
//
LOCUS       DATIHC010000221         1768 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_40360, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000221 DATIHC010000000
VERSION     DATIHC010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1768)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1768)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1768
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40360"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..319
                     /locus_tag="VLF16_03520"
     CDS             <1..319
                     /locus_tag="VLF16_03520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012269907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69979.1"
                     /translation="DEAYLAHRLVEEVNDRYIAHLGQPLIPLDTTVANVIAHQLIGEP
                     FANQLDEAVHHTLDELLDDSVFRQDSVQEYRARLASPQTLAAWQNWPCLSRQLGVELG
                     LPA"
     gene            complement(366..1091)
                     /locus_tag="VLF16_03525"
     CDS             complement(366..1091)
                     /locus_tag="VLF16_03525"
                     /EC_number="4.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012020219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004089 - carbonate dehydratase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HSX69980.1"
                     /translation="MPYKHNAIPLQARTAPESADEALNAIVGGFKRFRSEVFPQQEEL
                     FKALASAQNPRAMFITCADSRIVPELITQSAPGDLFVSRNVGNVVPAYGQMMGGVSTA
                     IEYAVLALGVQHIIVCGHSDCGAMKAVLAPETLESMPTVKAWLRHSEVALKVVEANCG
                     CEGHDRLGILTEENVVAQLNHLCTHPSVAARVASGQLFIHGWVYDIETSAIRAYDAES
                     GRFLPLDGEVVPMATPRARYPAQ"
     gene            complement(1245..>1768)
                     /locus_tag="VLF16_03530"
     CDS             complement(1245..>1768)
                     /locus_tag="VLF16_03530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HSX69981.1"
                     /translation="RNLVSVAFSLTTLDDELKRIMEPRTASPGARLRAMRSLHEAGVP
                     VAAMAAPIIPMINDMELERILEAARDAGARSAGYVLLRPPLEIAELFEEWLRSHFPER
                     AEHVMSLIRQSRGGQNYDSRFGTRMRGEGAFADLLAQRFALARKRLGLIRRDGFELDC
                     SQFAPPGRQMALL"
BASE COUNT          267 a          599 c          608 g          294 t
ORIGIN      
        1 cgacgaggcc tacctggccc atcgcctggt cgaggaggtc aacgatcgct acatcgccca
       61 cctcggccag ccgctgattc cgctggatac cacggtggcc aacgtgatcg cccaccagct
      121 gatcggcgag cccttcgcca accaactgga cgaggccgtg caccacaccc tcgacgaatt
      181 gctcgacgac agcgtgttcc gtcaggactc ggtacaggaa taccgtgccc gcctcgccag
      241 cccgcaaacc ctggcggcct ggcagaactg gccgtgcctg tcgcgccagc tgggcgtgga
      301 gctcggcctg ccggcctgag gctgtcgcag atgcaacaag gcccgcattc gcgggccttg
      361 tcgtttcact gggcggggta gcgcgccctg ggcgtggcca tcggcaccac ctcgccgtcc
      421 agcggcagga agcgcccgct ctcggcgtcg taggcgcgga tcgcgctggt ctcgatgtcg
      481 tagacccagc cgtggatgaa cagctggccg ctggcgacgc gcgccgccac tgacgggtgc
      541 gtgcacaggt ggttgagctg ggccactacg ttttcctcgg tgaggatgcc gaggcggtcg
      601 tggccttcgc agccgcagtt ggcctcgacc accttgagcg ccacctcgct gtggcgcagc
      661 caggccttca ccgtcggcat gctctccagg gtctcggggg ccagtaccgc cttcatcgcg
      721 ccgcaatcgg agtgaccgca gacgatgatg tgctggacgc ccagggccaa taccgcgtat
      781 tcgatggcgg tggagacgcc gcccatcatc tgcccgtagg ccggcaccac gttgccgacg
      841 ttgcggctga cgaacaggtc gcccggcgcg ctctgggtga tcagctcggg gacgatgcgc
      901 gagtcggcgc aggtgatgaa catggcgcgc gggttctgtg cgctggccag cgccttgaac
      961 agctcctcct gctgcgggaa gacttcgctg cggaagcgtt tgaagccgcc aacgatggcg
     1021 ttcagcgcct cgtcggcgct ctccggcgcg gtacgcgcct gcaggggaat ggcgttgtgc
     1081 ttgtagggca tgcgtctcac ctcgtgctgg accgtcgcgc tgtcgcgcgc tgcggattat
     1141 cgacctggca tgcggacagt tgccagcctc ggcgagtcac atttcgcagg aaagccgcga
     1201 ggcggttcgg tgcgtggagc gcacggagtc gttcgagtac cggcttacaa cagcgccatc
     1261 tgtcgtccgg gcggcgcgaa ctggctgcag tccagctcga agccgtcgcg gcggatgagc
     1321 cccaggcgct tgcgcgccag ggcgaaacgc tgcgccagca ggtcggcgaa ggcgccctcg
     1381 ccgcgcatgc gggtaccgaa gcggctgtcg tagttctggc cgccgcggga ctggcggatc
     1441 aggctcatca catgctcggc gcgttccggg aaatggctgc gcagccattc ctcgaacagc
     1501 tcggcgatct ccagcggcgg gcgcagcagc acgtagccgg ccgagcgtgc gcccgcatcg
     1561 cgggccgcct cgagaatccg ctccagctcc atgtcgttga tcatcggaat gatcggtgcc
     1621 gccatcgccg ccaccggcac gccggcctcg tgcaggctgc gcatggcgcg caggcgtgca
     1681 ccgggagaag ccgtgcgcgg ctccatgatg cgtttcagct cgtcgtccag ggtggtcagg
     1741 ctgaacgcca cgctgaccag gttgcgac
//
LOCUS       DATIHC010000222         2575 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19277, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000222 DATIHC010000000
VERSION     DATIHC010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2575
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19277"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(38..994)
                     /locus_tag="VLF16_03535"
     CDS             complement(38..994)
                     /locus_tag="VLF16_03535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010794530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SdiA-regulated domain-containing protein"
                     /protein_id="HSX69982.1"
                     /translation="MLAVAKHFMIRGIRVPYQAALLCVLVVWSLYFIRTEHLDDRLYF
                     WMKTHWNSAQWHDKSVWLPAYRVEVDAKVVPGIANNLSGLSFDPDRDLLWAVTNGPNL
                     LLAMSLNGDVVGRYPLEGFHDVEAVSYLGDGMVAVVEERRQNIVPIRLPLTDAGRLAG
                     DRTLHRHHYQGLQLALGKEDNKGFEGLAYDLKGDRLYVAKERDPRQLLEITGIRQSLD
                     SAFSLQVKDLSEAVRDKVFATDLSSVVFDQRSGHLVLLSDESKLLIEMTDQGQVVSFR
                     SLHGGSAGLHEGIPQAEGVTLDDQGRLYLISEPNLFYRFDRS"
     gene            complement(1336..>2575)
                     /locus_tag="VLF16_03540"
     CDS             complement(1336..>2575)
                     /locus_tag="VLF16_03540"
                     /inference="COORDINATES: protein motif:HMM:NF015588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl hydrolase family 65 protein"
                     /protein_id="HSX69983.1"
                     /translation="AREAGRRGAMFPWRSARSGTEQTPPYRKNPLSGRWMADPTCLQR
                     HIGAAVVYDVWQHYQMTGDPALLAEEGGELMIEVARFWASAATFDDALGRYAIRGVIG
                     PDEYHNAYPGNPRPGLDNNAYTNLMAAWVLCRAVDLLERLPDDHAQALRRRLQLDAAE
                     PGHWAEVSRRLYLPFLADGVLNQFDGYERLLPAPDDWLNGEHERLDWWLEARGDCCDR
                     YQPTKQADVLTLLHLFPPHELRELCAHLGYRFDETAMRRTADYHMARIAHESSLSKMV
                     CAGALAHLDPEASWQQYCGCLRTDLESPSDGGTQEGVHLGAMAGALDVLQRHYLGIYP
                     GADALHLRPAAPPALDDVTLGFLFHGQRMRVHLRDRRLTLELAAGAAPVEVCHAGGRV
                     RLAAGERLTLDCPAVKRIDP"
BASE COUNT          378 a          851 c          963 g          383 t
ORIGIN      
        1 gcggcgcgcg gcggcggggc gccgccgcgc tcgaccgtca ggaacggtcg aagcggtaga
       61 acaggttggg ttcgctgatc aggtacaggc ggccctggtc gtccagggtc acgccctcgg
      121 cctggggaat gccctcgtgc aggccggcgg agccgccgtg cagcgagcgg aagctgacca
      181 cctggccctg gtcggtcatc tcgatcagca gcttcgactc gtcgctgagc agcaccaggt
      241 ggccgctgcg ctggtcgaac accaccgacg acaaatcggt ggcgaacacc ttgtcgcgca
      301 ccgcctcgga gaggtccttc acctgcagcg agaaggcgct gtcgaggctc tggcggatgc
      361 cggtgatctc cagcagctgg cgcgggtcgc gctccttggc cacgtagagg cgatcaccct
      421 tgaggtcgta ggccaggccc tcgaagccct tgttgtcctc cttgccgagc gccagctgca
      481 ggccctggta gtgatggcga tgcagcgtgc ggtcgccggc caggcggccg gcgtcggtca
      541 gcggcagacg gatcggcacg atgttctggc gccgctcctc gaccaccgcg accatgccgt
      601 cgcccaggta ggacaccgcc tcgacatcgt ggaagccttc cagcgggtag cgcccgacca
      661 cgtcgccatt caggctcatg gccagcagca ggttggggcc gttggtcacg gcccagagca
      721 ggtcgcggtc cggatcgaag ctgagcccgg agaggttgtt ggcgatgccc ggcaccacct
      781 tggcgtccac ctcgacgcgg taggcgggca gccacacgga cttgtcatgc cactgcgcac
      841 tgttccagtg ggtcttcatc cagaagtaga gtcggtcgtc cagatgctcc gtccggatga
      901 aatacaggct ccagacgacg aggacgcaca gcagtgccgc ctggtagggc acgcggatgc
      961 ctcggatcat gaagtgcttc gccactgcga gcatggatgc ttctcctggt ctggcctcca
     1021 gcggaggcct ggggcggccc gtgacaacaa gcggggccgg gtgagtgacc cgcgccatgg
     1081 gcggagtcga taccggcgcc ccttgtagca ggcgggcgcg aaagttgtat gacggaacga
     1141 atcgccagcg gcgcgcgggt gcggccgccg cgccctgcac ggcaccgggg tgctgcgggg
     1201 cgaaggatcc ttgctgtgtt cggtctgccg tgaccaggcg aatcggcgag cgggaggatg
     1261 ccgcggcgcg gccgtcaggg ccagcggaga ttgccaccgt gcaacatccg gaaaaccaaa
     1321 gccgttgcgg cccggctacg gatcgatgcg tttcaccgcc gggcagtcca gcgtcagccg
     1381 ttcgccggcg gcgaggcgca cgcgcccgcc ggcgtggcac acctcgacgg gcgcggcgcc
     1441 ggcagccagc tccagggtca ggcggcgatc gcgcaggtgc acgcgcatgc gctggccgtg
     1501 gaacaggaag cccagggtga cgtcgtccag cgcgggcgga gcggcggggc gcaggtgcaa
     1561 tgcgtcggcg cccgggtaga tgcccaggta gtggcgctgc agcacgtcga gagcgccggc
     1621 catggcgccc aggtgcacgc cttcctgggt gccgccgtcc gaaggcgact ccaggtcggt
     1681 gcgcaggcag ccgcagtact gctgccagga ggcctcgggg tcgaggtggg cgagggcgcc
     1741 ggcgcagacc atcttcgaca ggctcgactc gtgggcgatg cgcgccatgt ggtaatccgc
     1801 cgtgcgccgc atggccgtct cgtcgaagcg gtagcccagg tgtgcgcaca gctcgcgcaa
     1861 ctcgtgcggg gggaacaggt gcagcagcgt cagcacgtcg gcctgcttgg tcggctggta
     1921 gcggtcgcaa cagtcgccgc gcgcttccag ccaccagtcg aggcgctcgt gctcgccgtt
     1981 cagccagtcg tcgggggcgg gcagcaggcg ttcgtagccg tcgaactggt tgagcacgcc
     2041 gtcggcgaga aacggtaggt ataggcgccg cgatacctcg gcccagtgcc ccggctcagc
     2101 ggcgtccagc tgcaggcgcc ggcgcagcgc ctgggcgtgg tcgtccggca ggcgctcgag
     2161 caggtcgacg gcgcggcaca gcacccaggc ggccatcagg ttggtgtagg cgttgttgtc
     2221 cagcccgggc cgcgggttgc cggggtaggc gttgtggtac tcgtccgggc cgatgacgcc
     2281 gcggatcgcg tagcgcccga gtgcgtcgtc gaaggtcgcg gcgctggccc agaagcgcgc
     2341 cacctcgatc atcagctcgc cgccttcctc ggccagcagc gccgggtcgc cggtcatctg
     2401 gtagtgctgc cagacgtcat agaccaccgc ggcgccgatg tgccgctgca ggcaggtggg
     2461 gtcggccatc cagcggccgg agagcgggtt cttgcggtac ggcggcgtct gctcggtgcc
     2521 gctgcgggcg ctgcgccagg ggaacatcgc gccgcgccga cctgcctcgc gggcc
//
LOCUS       DATIHC010000223         1651 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37740, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000223 DATIHC010000000
VERSION     DATIHC010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1651
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37740"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(3..461)
                     /gene="accB"
                     /locus_tag="VLF16_03545"
     CDS             complement(3..461)
                     /gene="accB"
                     /locus_tag="VLF16_03545"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HSX69984.1"
                     /translation="MDIRKVKKLIELLEESGIDELEIREGEESVRISRHSKQPAYAPQ
                     PVYAAAPAPAAAPVAAAAPAEAGAPAAAKLNGHVVRSPMVGTFYRAASPTSANFAEVG
                     QTVKKGDILCIVEAMKMMNHIEAETSGVIESILVENGQPVEYDQPLFTIV"
     gene            complement(487..930)
                     /gene="aroQ"
                     /locus_tag="VLF16_03550"
     CDS             complement(487..930)
                     /gene="aroQ"
                     /locus_tag="VLF16_03550"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HSX69985.1"
                     /translation="MATLLVLHGPNLNLLGTREPDKYGATTLAEINQDLEQRARTAGH
                     HLLYLQSNAEYELIERIHAAKGEGVDFILINPAAFTHTSVALRDALLAVSIPFIEVHL
                     SNVHKREPFRHHSYFSDVAVGVICGLGASGYRLALEAALEQLERP"
     gene            complement(1053..>1651)
                     /locus_tag="VLF16_03555"
     CDS             complement(1053..>1651)
                     /locus_tag="VLF16_03555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003123530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HSX69986.1"
                     /translation="LALWGLLAAGVALWLGVLELTPKTHHQKLAQLIGLPLLVYAVIA
                     WVGALQGQNDPLRPLGHAQTAAEASPARAEHSQWQTVTTPAELDAALAEAKGAGQPLL
                     LDWYADWCISCKVIEREVLTAPAVTAQLGGYRLIRFDITESREDQRALLDRYQLFGPP
                     AILFFAPKGDEWSDLRVVGEISAADFADRLTRAASRQN"
BASE COUNT          259 a          495 c          592 g          305 t
ORIGIN      
        1 catcagacga tggtgaacag gggctggtcg tactcaaccg gctggccgtt ctcgacgagg
       61 atcgattcga tcacgccgct ggtctcggcc tcgatgtggt tcatcatctt catggcttcg
      121 acgatgcaga ggatgtcgcc cttcttcacg gtctggccga cttcggcgaa gttggcggag
      181 gtcggcgagg cggcgcggta gaaggtgccg accatcggcg agcgcaccac gtggccgttc
      241 agcttggcgg cggccggggc gccggcttcg gctggcgcgg cggcggcaac aggcgcggcg
      301 gccggagccg gagcggctgc gtataccggc tgcggggcgt aggccggttg cttgctgtgg
      361 cggctgatgc gtacggactc ttcgccctcg cggatttcca gttcgtcgat accggactct
      421 tccagcagct cgatcagttt tttgacttta cggatatcca tagttcttca actcccaagg
      481 gtgaggtcag gggcgttcta attgttccag ggcggcctcc agggccaggc ggtaaccgct
      541 ggcgccaagg ccgcagatca ctcccaccgc tacgtcggag aagtaggagt gatggcggaa
      601 gggttcgcgc ttgtgcacgt ttgacaggtg cacttcgatg aatgggatgc tcaccgccag
      661 caacgcgtca cgtaatgcga cgctggtgtg ggtgaaagcg gccggattga tgaggatgaa
      721 gtcgactccc tcgcctttcg ccgcatgaat gcgctcgatc agttcgtact cggcattgct
      781 ctgcaggtac agcaggtgat ggccggcggt acgcgcgcgc tgttccagat cctggttgat
      841 ctcggccagc gtggtggcgc cgtatttgtc gggctcgcgg gtgcccagca gattgaggtt
      901 ggggccgtgc agcaccagga gagtggccat gggcgcttcc ttgttgttct gaccttggaa
      961 tggccgggac tatgccgaaa gcgccggggg ctgtccagtt gccgggagta gtcggcacga
     1021 tggacgaaat ttgcggcaga aatatgacgt cgtcagttct ggcgggaggc ggcgcgggtc
     1081 aggcggtcgg cgaagtcggc ggcgctgatt tcacctacga cacgcaaatc cgaccattcg
     1141 tcacccttcg gcgcgaagaa caggatcgcc ggcgggccga acagctggta gcggtcgagc
     1201 agggcgcgct ggtcctcgcg gctctcggtg atgtcgaagc ggatcagccg gtaaccgccc
     1261 agctgcgcgg tcacggccgg cgcggtcagc acctcgcgct cgatcacctt gcagctgatg
     1321 caccagtcgg cgtaccagtc cagcagcagc ggctggccgg cgcctttcgc ctcggccaga
     1381 gcggcgtcca gttcggcggg ggtggtgacg gtctgccact ggctgtgctc ggcacgcgcc
     1441 ggcgacgcct cggcagcggt ctgggcatgg cccagcgggc gcagcggatc gttctggccc
     1501 tgcagcgcgc cgacccaggc gatgacggca tagaccagca gcggcaggcc gatcagctgc
     1561 gccagcttct ggtggtgggt cttgggcgtc agctccagca cgccgagcca cagggccacg
     1621 ccggcggcca gcaggcccca cagcgccagg g
//
LOCUS       DATIHC010000224         2067 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19278, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000224 DATIHC010000000
VERSION     DATIHC010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2067
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19278"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1193)
                     /locus_tag="VLF16_03560"
     CDS             complement(<1..1193)
                     /locus_tag="VLF16_03560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent transcriptional regulator"
                     /protein_id="HSX69987.1"
                     /translation="MRIKVHCQNRVGILRDILELLVDYGINVARGEVGGEQGNAIYLH
                     CPNLINLQFQALRPKLESIAGVFGVKRVGLMPSERRHLELNALLGALDFPVLSIDMGG
                     SIVAANRSAAQLLGVRVDEVPGMALSRYIEDFDLPELVRANKSRVNGLRVKVKGDVFL
                     ADIAPLQSEHDESEALAGAVLTLHRADRVGERIYNVRKHELRGFDSIFQSSRVMAAVV
                     REARRMAPLDAPLLIEGETGTGKELLARACHLASPRGQAPFMALNCAGLPESMAETEL
                     FGYGPGAFEGARPEGKLGLLELTAGGTLFLDGVGEMSPRLQAKLLRFLQDGCFRRVGS
                     DEEVYLDVRVICATQVDLSELCAKGEFRQDLYHRLNVLSLHIPPLRECLDGLGPLVEH
                     FLDSA"
     gene            1469..>2067
                     /gene="phhA"
                     /locus_tag="VLF16_03565"
     CDS             1469..>2067
                     /gene="phhA"
                     /locus_tag="VLF16_03565"
                     /EC_number="1.14.16.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004888099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004505 - phenylalanine 4-monooxygenase
                     activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine 4-monooxygenase"
                     /protein_id="HSX69988.1"
                     /translation="MTQYVARQPDEAGFIHYSDTEHQVWNTLITRQMKVLEGRACQEY
                     FDGIEQLALPTDRIPQLGEINQVLDATTGWSVAQVPALIPFQTFFELLASKRFPVATF
                     IRTPQELDYLQEPDIFHEIFGHCPLLTNPWFAEFTHTYGKLGLAATKEQRVYLARLYW
                     MTIEFGLVDTPQGRRIYGGGILSSPKETVYSLSDEPEHQA"
BASE COUNT          354 a          720 c          658 g          335 t
ORIGIN      
        1 ctggccgaat cgaggaagtg ctccaccagc ggaccgaggc catccaggca ttcgcgcagc
       61 ggcgggatgt gtaggctcag tacgttcaag cggtggtaca ggtcctggcg gaattcgccc
      121 ttggcgcaca gctcggacag atcgacctgg gtggcgcaga tcacccgcac gtccaggtac
      181 acctcctcgt cgctgcccac ccggcggaag cagccgtcct gcaaaaagcg cagcagcttg
      241 gcctgcaggc gcgggctcat ctcgccgacg ccatcgagaa acagcgtgcc accggcggtc
      301 aattccagca ggccgagctt gccctccggc cgcgcgccct cgaaggcgcc ggggccgtag
      361 ccgaacagtt cggtctcggc catggattcc ggcaggccgg cgcagttgag cgccatgaac
      421 ggtgcctggc cgcgcgggct ggccaggtgg caggcgcgcg ccaacagctc cttgccggtg
      481 ccggtctcgc cctcgatcag cagcggcgcg tccagcggcg ccatgcgccg cgcctcgcgc
      541 accacggcgg ccatcaccct ggagctctgg aagatcgagt cgaagccgcg cagctcgtgc
      601 ttgcgcacgt tgtagatgcg ctcgccgacc cggtcggcgc ggtgcagggt gagcacggcg
      661 ccggccagcg cctcgctctc gtcgtgctcg gactgcagcg gcgcgatgtc ggcgaggaac
      721 acatcgccct tcaccttgac ccgcaggccg ttgacccgcg acttgttggc gcgcaccagc
      781 tcgggcaggt cgaagtcctc gatatagcgc gacagcgcca tgcccggcac ctcgtcgacg
      841 cgcaccccga gcagctgcgc ggcgctgcgg ttggccgcga cgatggagcc gcccatgtcg
      901 atggacagca ccggaaaatc cagcgcgccg agcagcgcgt tgagctccag gtggcggcgc
      961 tcgctgggca tcaggccgac gcgcttgacc ccgaacaccc cggcgatcga ctccagcttg
     1021 ggccgcaggg cctggaactg caggttgatg agattggggc agtgcaggta gatggcgttg
     1081 ccctgctcgc cgccgacttc gccgcgggcg acgttgatgc cgtagtcgac cagcagctcg
     1141 agaatgtcgc gcagaatgcc gacgcggttc tggcaatgga ccttgattcg cacggtgatt
     1201 cgaccctgat tcgttgttgt gtgtgggtcg cggcctgatt ttttgcacgg cggccgtcga
     1261 tttctgtcaa gaatatgtga cagatcgccg tgccgacaac gcgaacaatc gcagcccggc
     1321 gacttttgtc actgtttctt tacgaaagtc ccgaacagcg gaccgcctcg ccctcgccca
     1381 cccccgctgt aagcgccgcg ctttcgcggt acctatgggt caacacaaca acactccgcg
     1441 gcccgcccgc agacgaggag gcgattcgat gacgcaatac gtggcccggc aacccgacga
     1501 agcgggcttc atccactact cggacaccga gcaccaggtg tggaacaccc tgatcacccg
     1561 gcagatgaag gtgctcgagg gccgcgcctg ccaggaatat ttcgacggca tcgaacagct
     1621 cgccctcccc acggaccgca tcccccagct gggcgagatc aaccaggtgc tcgacgccac
     1681 caccggctgg agcgtggcgc aggtgccggc gctgattccc ttccagacct tcttcgagct
     1741 gctggccagc aagcgcttcc cggtcgcgac cttcatccgc accccgcagg agttggatta
     1801 cctgcaggag ccggacatct tccacgagat cttcggccac tgcccgctgc tgaccaatcc
     1861 ctggttcgcc gaattcaccc acacctacgg caagctcggc ctggccgcca ccaaggagca
     1921 gcgcgtgtac ctggcgcggc tgtactggat gaccatcgag ttcggcctgg tcgacacgcc
     1981 gcaaggtcgg cgcatctacg gcggcggcat tctctcctcg ccgaaggaga cggtgtattc
     2041 cctgtccgac gagccggagc accaggc
//
LOCUS       DATIHC010000225         2109 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42638, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000225 DATIHC010000000
VERSION     DATIHC010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2109
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42638"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(78..494)
                     /locus_tag="VLF16_03570"
     CDS             complement(78..494)
                     /locus_tag="VLF16_03570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017675268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II truncated hemoglobin"
                     /protein_id="HSX69989.1"
                     /translation="MGERYGEGDASYRAAGGLDGLRRLVDDFYRFMDELPEAAELRAL
                     HPESLEASRDKLTCFLSGWLGGPRLFAEKYGSIAIPSFHARWPIDGHQAEAWLTCMAR
                     AIASQDYAPEFANYLLAQLRVPAQRIVQTSAARHGR"
     gene            678..2054
                     /locus_tag="VLF16_03575"
     CDS             678..2054
                     /locus_tag="VLF16_03575"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003941 - L-serine ammonia-lyase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009063 - amino acid catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HSX69990.1"
                     /translation="MALSVFDLFKIGIGPSSSHTVGPMRAAARFVEGLRREGLFEATA
                     GIKVELYGSLGATGKGHGSDKAVLLGLEGEQPDSVDTSTIEARLTAMRAGGELRLGGE
                     KAIRFVEKEHLAMIRKPLDYHPNGMIFRAFDAAGLQIRSREYYSVGGGFVVDEEAAGA
                     DRIVEDKTPLAYPFKTAKELLGQCAEHSLSISQLMLANEEAWRPEAETRAGLLNIWQV
                     MQDCVTAGCRNEGIMPGGLKVRRRAAALHRQLSQNPEASLRDPLTVMDWVNLYALAVN
                     EENATGGRVVTAPTNGAAGIVPAVLHYYRRFVPGASDDGVVRFLLTAAAIGILYKENA
                     SISGAEVGCQGEVGVACSMAAGALCEVLGGTIQQVENAAEIGMEHNLGLTCDPVGGLV
                     QVPCIERNAMGSVKAINAARMALRGDGKHKVSLDKVIKTMRDTGNDMKDKYKETSRGG
                     LAVNVIEC"
BASE COUNT          364 a          725 c          730 g          290 t
ORIGIN      
        1 gatcactcta gggcgccgcc ccggcgggcg gaaatcgctg ttctcgatag tgcctatgag
       61 ccgcagcgat ggcggcacta gcgaccgtga cgcgcggcgc tggtctggac gatgcgctgc
      121 gccggcacgc gcagctgggc cagcagatag ttggcgaatt ccggggcgta gtcctggctg
      181 gcgatggcgc gggccatgca ggtcagccag gcctcggcct ggtggccatc gatcggccag
      241 cgcgcatgga agctggggat ggcgatgctg ccgtacttct cggcgaacag gcgcgggccg
      301 ccgagccagc cgctgagaaa gcaggtgagc ttgtcgcgcg aggcctccag gctctcggga
      361 tgcagggcgc gcagctcggc cgcctcgggc agctcgtcca tgaagcggta gaagtcgtcc
      421 accagccgcc gcagcccgtc cagaccgccc gcggcccggt aggaagcatc gccctcgccg
      481 taacgctcgc ccatgcatca cctccgaaaa aggccggcat tctagcgccg accacgcaat
      541 ggggaattgc gcctcgtcag tgcagcggca gcccaccgat gggcgaagta gcgcaactgc
      601 gggtcgcatc ctcgacctta tcggccggcg cggccggtgt aagctgtgac cagcaagtca
      661 gcggagcaac tctttacatg gccctcagcg ttttcgacct cttcaagatc ggcatcggtc
      721 cctccagctc gcacacggtc ggcccgatgc gcgccgccgc gcgtttcgtc gagggcctgc
      781 gccgcgaggg cctgttcgag gccacggccg gcatcaaggt cgagttgtac ggctcgctcg
      841 gcgccaccgg caagggccac ggcagcgaca aagcagtgct tctcggcctg gaaggcgagc
      901 agccggacag cgtcgacacc tcgaccatcg aggcgcgcct gacggccatg cgcgccggcg
      961 gcgagctgag gctgggcggc gagaaggcga tccgcttcgt cgagaaggaa cacctggcga
     1021 tgatccgcaa gccgctggat taccacccca acggcatgat cttccgcgcc ttcgatgccg
     1081 ccggcctgca gatccgttcg cgcgagtact actcggtggg cggcggcttc gtggtcgacg
     1141 aggaggccgc gggcgccgac cgcatcgtcg aagacaagac ccccctcgcc tacccgttca
     1201 agaccgccaa ggagctgctc ggccagtgcg ccgaacacag cctctccatc agccagctga
     1261 tgctggccaa cgaggaggcc tggcggcccg aggcggagac ccgcgccgga ctactgaaca
     1321 tctggcaggt gatgcaggac tgcgtgaccg ccggctgtcg caacgagggc atcatgcccg
     1381 gcggcctcaa ggtgcgccgg cgcgccgccg cgctgcaccg ccagctcagc cagaaccccg
     1441 aggccagcct gcgcgacccg ctgacggtga tggactgggt caacctctac gccctggcgg
     1501 tgaacgagga aaacgccacc ggcggccggg tggtgacggc gcccaccaac ggcgccgccg
     1561 gcatcgtgcc ggcggtgctg cactactacc ggcgcttcgt gcccggcgcc tcggacgacg
     1621 gcgtggtgcg cttcctgctc acggccgcgg ccatcggcat cctgtacaag gaaaacgcct
     1681 cgatctccgg tgccgaggtc ggctgccagg gcgaggtcgg cgtggcctgc tcgatggccg
     1741 ccggcgcgct gtgcgaggtg ctcggcggaa ccatccagca ggtggagaac gccgccgaga
     1801 tcggcatgga acacaacctc ggcctgacct gcgacccggt cggcgggctg gtccaggtgc
     1861 cgtgcatcga gcgcaacgcc atgggctcgg tgaaggccat caacgccgcg cgcatggccc
     1921 tgcgcggcga cggcaagcac aaggtctcgc tggacaaggt catcaagacg atgcgcgaca
     1981 ccggcaacga catgaaggac aagtacaagg aaaccagtcg cggcgggctc gcggtcaacg
     2041 tcatcgagtg ctgagccgcg ctgtcgcgga cgcatcgcgg cgacaggaac cggacacccg
     2101 tcacggatc
//
LOCUS       DATIHC010000226         2919 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12248, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000226 DATIHC010000000
VERSION     DATIHC010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2919
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12248"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..802
                     /locus_tag="VLF16_03580"
     CDS             <1..802
                     /locus_tag="VLF16_03580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HSX69991.1"
                     /translation="GIEGPDEREAAGKARAGRVVLSAEQEGDHILLSISDDGKGMDPE
                     VLRAKAVEKGLLDKDAADRLSETECYNLIFAPGFSTKTEISDVSGRGVGMDVVKTKIS
                     QLNGIINVHSAKGQGSKIIIKVPLTLAIMPTLMVMLANQAFAFPLVNVNEIFHLDLSR
                     TNVVDGQEVVIVRDKALPLFYLKRWLVVGASNEEQREGHVVILTVGSQRIGFVVDQLV
                     GQEEVVIKPLGKMLQGTPGMSGATITGDGRIALILDVPSMLKRYARRI"
     gene            842..1978
                     /locus_tag="VLF16_03585"
     CDS             842..1978
                     /locus_tag="VLF16_03585"
                     /EC_number="3.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011913676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0008984 - protein-glutamate methylesterase
                     activity [Evidence IEA];
                     GO_function: GO:0050568 - protein-glutamine glutaminase
                     activity [Evidence IEA];
                     GO_process: GO:0006482 - protein demethylation [Evidence
                     IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0018277 - protein deamination [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator protein-glutamate
                     methylesterase"
                     /protein_id="HSX69992.1"
                     /translation="MAVKVLVVDDSGFFRRRVSEILSADPDIQVVGTATNGREAIDQA
                     LALKPDVITMDYEMPMMDGITAVRNIMQRCPTPVLMFSSLTHEGARVTLDALDAGAVD
                     YLPKNFEDISRNPDKVKAMLCEKVHTIARSNRRYSTFSPAAPSPSSHGTASSSAPAQS
                     GFGTARSTAPAPSARPAAPAAPAASGGAPKRKPYRLVAIGTSTGGPVALQRVLTQLPA
                     NFPAPIVLIQHMPAAFTKAFAERLDKLCRITVKEAEDGDVLRPGLALLAPGGKQMMVD
                     PRGTVRILPGDERLNYKPCVDITFGSAAKSFNDKVLAVVLTGMGADGREGARLLKQSG
                     SQVWAQDEASCVIYGMPMAVVKANLADAVYGLDEIGRHLTEACV"
     gene            1978..2718
                     /locus_tag="VLF16_03590"
     CDS             1978..2718
                     /locus_tag="VLF16_03590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein"
                     /protein_id="HSX69993.1"
                     /translation="MDVLSLIGVILAFVAIVGGNYLEGGHAGALINGPAALIVIGGTL
                     GAAFLQAPMNVFKRALTILRWIVFPPRIDLAGGINSVVGWSMTARKEGLLGLEPVADA
                     ESDPYARKGLQLLVDGTEPEAIRSILEVDLYTQEARDIQAAKVFESMGGYAPTIGIIG
                     AVMGLIHVMGNLADPSKLGGGIAVAFVATIYGVAFANLLLLPVGAKLKAIAARQSRYR
                     EMLLEGILSIAEGENPRSIELKLQGFMD"
     gene            2721..>2919
                     /locus_tag="VLF16_03595"
     CDS             2721..>2919
                     /locus_tag="VLF16_03595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HSX69994.1"
                     /translation="MPRRRIHEEHENHERWLVSYADFITLLFAFFVVMYSISSINEGK
                     YKVLSESLTGVFSEPERAIKPI"
BASE COUNT          502 a          962 c          967 g          488 t
ORIGIN      
        1 cggcatcgag gggccggacg agcgcgaggc cgccggcaag gcgcgggcgg gcagggtggt
       61 gctgtccgcc gagcaggagg gcgatcatat cctcctgtcg atctccgacg acggcaaggg
      121 catggacccg gaggtcctcc gcgccaaggc ggtggagaag ggcctgctgg acaaggacgc
      181 tgccgatcgc ctaagcgaga ccgagtgcta caacctgatc ttcgccccgg gcttctcaac
      241 caagaccgag atctccgacg tctccggccg cggcgtcggc atggacgtgg tgaagaccaa
      301 gatctcccag ctcaacggca tcatcaacgt gcactcggcc aagggtcagg gctcgaagat
      361 catcatcaag gtgccgctga ccctggcgat catgccgacc ctgatggtga tgctggccaa
      421 ccaggccttc gccttcccgc tggtcaacgt caacgagatc ttccacctcg acctgtcgcg
      481 caccaacgtg gtggacggcc aggaagtggt gatcgtgcgc gacaaggcac tgccgctgtt
      541 ctacctcaag cgctggctgg tggtcggtgc gtccaacgag gagcagcgcg agggccatgt
      601 ggtgatcctc accgttggca gccagcgtat cggcttcgtg gtcgatcaac tggtgggcca
      661 ggaagaggtg gtgatcaagc cgctcggcaa gatgctgcag ggcacgcccg gcatgtctgg
      721 cgcaaccatt accggtgacg ggcgtatcgc cctgatcctc gacgtgccga gcatgctcaa
      781 gcgctacgcg cggcgcatct gatcgttcac gaccggctcc gccggtcgct ctggagtgtt
      841 tatggcagtc aaggtcctgg tggtggacga ctccggcttc ttccgccgca gggtctcgga
      901 aatcctctcc gccgaccccg atattcaggt ggtcggtacc gccaccaatg gccgcgaggc
      961 catcgatcag gcgctggcgc tgaagccgga cgtgatcacc atggactacg agatgccgat
     1021 gatggacggc atcacggcag tgcggaacat catgcagcgc tgcccgacgc cggtgctgat
     1081 gttctcctcg ctcacccacg aaggcgctcg cgttaccctg gatgcgctgg atgccggtgc
     1141 ggtggattac ctgccgaaga atttcgagga catctcgcgc aacccggaca aggtcaaggc
     1201 gatgctgtgc gagaaggtgc ataccatcgc gcgaagcaac cgacgctaca gcaccttcag
     1261 tccggcggcg ccgagcccgt ctagccatgg cacggcatct tcctccgcgc ccgcgcagtc
     1321 cggtttcggc accgcgcgta gcactgcgcc cgcgccgagt gcccgtcccg cggcaccggc
     1381 cgcaccggcc gccagtggtg gcgccccaaa gcgtaaaccg taccggctgg tggcgatcgg
     1441 cacctccacc ggtggccccg tcgcgctgca gcgcgtgctg acccagctgc cggccaattt
     1501 tccggcgccc atcgtgctga tccagcacat gccggcggcc ttcaccaagg ccttcgccga
     1561 gcgcctggac aagctgtgcc ggatcaccgt caaggaggcc gaggacggcg acgtgctgcg
     1621 cccgggcctg gccctgctgg cccccggcgg caagcagatg atggtcgacc cgcgcggcac
     1681 ggtgcgaatt ctgcccggcg acgaacgact caactacaag ccctgcgtgg acatcacctt
     1741 cggctcggcg gccaagtcgt tcaacgacaa ggtgctggcc gtggtgctca ccggcatggg
     1801 cgccgatggc cgcgagggcg cgcgcctgct caagcagagc ggcagccagg tgtgggccca
     1861 ggacgaggcg agctgcgtga tctacggcat gcccatggcg gtggtgaagg ccaatctggc
     1921 cgatgccgtg tatggcctcg acgagatcgg ccggcatctc accgaggcct gcgtctgatg
     1981 gatgtactga gcctcatcgg ggtcattctc gccttcgtcg ccatcgtcgg cggcaattat
     2041 ctggagggcg ggcatgcggg cgcgctgatc aacgggccgg cggccctgat cgtgatcggc
     2101 ggcaccctcg gcgcggcctt tctccaggcc ccgatgaacg tgttcaagcg ggccctgacc
     2161 atcctgcgct ggatcgtttt cccgccgcgc atcgacctgg ccggcggcat caacagtgtg
     2221 gtcggctgga gcatgacggc gcgcaaggag ggtctgctgg gcctcgagcc ggtggccgac
     2281 gccgaatccg acccctatgc ccgcaagggc ctgcagctgc tggtggacgg caccgaaccg
     2341 gaagccatcc gcagcattct cgaagttgac ctctacaccc aggaggcccg cgacatccag
     2401 gcggccaagg tgttcgagag catgggcggc tacgcgccga ccatcggcat catcggcgcg
     2461 gtgatgggcc ttatccacgt gatgggcaac ctggccgacc ccagcaagct gggcggtggc
     2521 atcgccgtgg ccttcgtcgc caccatctac ggcgtggcct tcgccaacct gctgctgctg
     2581 ccggtgggcg ccaagctgaa ggccatcgcg gcgcgccagt cgcgttaccg tgaaatgctg
     2641 ctggagggca tcctgtccat cgccgagggc gagaatccgc gatccatcga gctgaagctg
     2701 cagggcttca tggactgacc atgccccgtc ggcggattca cgaagagcac gaaaatcacg
     2761 aacgctggct ggtgtcctac gcggacttca tcaccctgct gttcgccttc ttcgtggtga
     2821 tgtactcgat ctcctcgatc aacgagggca agtacaaggt gctgtcggag agcctgacgg
     2881 gcgtgttcag cgagccggag cgggcgatca agccgattc
//
LOCUS       DATIHC010000227         2126 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_44652, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000227 DATIHC010000000
VERSION     DATIHC010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2126
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44652"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1724
                     /locus_tag="VLF16_03600"
     CDS             <1..1724
                     /locus_tag="VLF16_03600"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:NF019315.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HSX69995.1"
                     /translation="PAPWLQYLLPGSELDFADAARAEGWRDLGGASLSLGYQDAPVWV
                     RLPLRNDSANADWRLLVEWPILDRVELRLFDPATGSWGPLLQAGDHLPLSAWPEPGRQ
                     PLFPLALAPGEERWAYLRLHSREGIVAPMQLLTADAYQAQEMDQRLVLGLFFGAMLAV
                     LLYNFSLFLFTRHYSYLWYSLYLLGVVVYELSLSGFGVRFLWPELGRPAGLIYAFSAL
                     WSFFAATCFVRVFLRIPRYGGWVLWANNLLLGYWSLALVLLFLRPQWLVAMGTPVAAL
                     LSCLLALATAVSLWRRGNRSALLFGLAWSLLVICTAVHIAALHSALPLNQFTLRSQTL
                     GFFSEFILLSIALADRINRERAARIRAQAALLKERESGLAAQQQMLEAQRGLNEELDR
                     RVRERTHELEQARLDLERANGELTRLSYTDALTQLANRRQVDEQLRLLKGAELTVLML
                     DIDHFKQINDRFGHPFGDRCIAAVAEVLRQQVRRSGDLAARYGGEEFIVLLRGCTPEA
                     GERIAERIRAEVAALALTHEGETVPLTVSLGLAQGRGDGRGALGAADQALYEAKQGGR
                     NRVCVAR"
     gene            1828..2100
                     /locus_tag="VLF16_03605"
     CDS             1828..2100
                     /locus_tag="VLF16_03605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012700435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX69996.1"
                     /translation="MNNLHCTYRDHAIGVAIIEHPGIPTPWAAGCTITSPDGSTTKRI
                     PLPLRFAFLADLESAQRASLAHGKWLVDRHLDQGVSLTGEAQAKAA"
BASE COUNT          283 a          742 c          747 g          354 t
ORIGIN      
        1 gtccggcgcc gtggctgcaa tacctgctac ccggcagcga actcgacttc gccgacgccg
       61 cccgggccga gggctggcgc gacctgggcg gtgcctcgct gagcctgggc tatcaggacg
      121 ccccggtgtg ggtgcgtctg ccgctgcgta acgattccgc caacgccgac tggcgcctgc
      181 tggtggagtg gccgatcctc gaccgggtcg agctgcgcct gttcgatccc gccaccggta
      241 gctgggggcc gctgctgcag gcgggcgatc acctgccgct gagcgcctgg cccgagcccg
      301 gccggcaacc gctgttcccg ctggcgctgg cgcccgggga agaacgctgg gcctatctgc
      361 gcctgcacag ccgggaaggt atcgtggccc cgatgcagct gctcaccgcg gacgcctacc
      421 aggcccagga gatggaccag cggctggtgc tggggctgtt cttcggcgcc atgctggccg
      481 tgctgctgta caacttcagc ctgttcctgt tcacccggca ctacagctac ctctggtaca
      541 gcctctatct gctcggtgtg gtggtgtacg agctgagcct gagcggtttc ggcgtgcggt
      601 tcctgtggcc ggagctgggc cgtccggccg ggctgatcta tgcgttctcg gcgctgtgga
      661 gcttcttcgc cgcgacctgc ttcgtgcggg tgttcctgcg cattccgcgt tacggcggct
      721 gggtgctgtg ggccaataac ctgctgctcg gctactggtc gctggcgctc gtcctgctgt
      781 tcctgcgccc gcaatggctg gtcgcgatgg ggacgccggt ggcggccttg ctcagctgcc
      841 tgctggcgct ggccacggcg gtcagcctgt ggcgtcgtgg caaccgttcg gccctgctgt
      901 tcggcctggc ctggtcgctg ctggtgatct gcaccgcggt gcacatcgcg gcgctgcata
      961 gcgccctgcc gctcaatcag ttcaccctgc gtagccagac cctcggcttc ttctccgaat
     1021 tcatcctgct ctccatcgcc ctggccgatc gcatcaaccg cgagcgggcg gcgcgcatcc
     1081 gcgcccaggc cgcgctgctg aaggagcgtg agagcggcct ggcggcgcag cagcagatgc
     1141 tcgaggcgca gcgcgggctc aacgaggagc tggaccgccg ggtgcgcgaa cgcacccacg
     1201 aactggaaca ggcccgtctc gacctggagc gcgccaacgg cgaactgacc cgcctcagct
     1261 acaccgatgc gctgacccag ctggccaacc gacgccaggt cgacgagcag ctgcggctgc
     1321 tcaagggtgc cgagctgacg gtgctgatgc tggacatcga tcacttcaag caaatcaacg
     1381 accgcttcgg tcatcccttc ggcgaccgct gcatcgccgc cgtggccgag gttctgcgcc
     1441 agcaggtgcg acgcagtggc gatctggctg cgcgctacgg cggcgaggag ttcatcgtgc
     1501 tgctgcgcgg ctgcacgccg gaggcgggcg agcgtatcgc cgagcgcatc cgcgccgagg
     1561 tcgcggcact ggccctgacg cacgagggcg aaacggtgcc gctgaccgtc agcctggggc
     1621 tggcccaggg ccgtggcgat gggcgcggcg cgctgggcgc cgccgatcag gcgctctacg
     1681 aggccaagca gggcgggcgc aaccgggtct gcgtggcgcg ctgaggcgcc cttcgtcggt
     1741 ccgcggtccg gggccggctg tagcgttcta tggtgggact gtcacgtccg ggcggcggcc
     1801 cggcgattca gcagcgaggg cccgagcatg aacaacctgc actgcaccta ccgcgaccac
     1861 gccatcggcg tggccatcat cgagcatccc ggcattccca ccccctgggc ggcgggctgc
     1921 accatcacct cgcccgatgg cagcaccacc aagcgcattc cgctgccgtt gcgattcgcc
     1981 tttctcgccg acctggagag cgcccagcgc gcctcgctgg cccacggcaa gtggctggtg
     2041 gatcggcatc tggaccaggg cgtgagcctg accggcgagg cccaggcgaa ggcggcctag
     2101 gcccacatgg caagacgccg cagagg
//
LOCUS       DATIHC010000228         3583 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21268, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000228 DATIHC010000000
VERSION     DATIHC010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3583
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21268"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..219)
                     /locus_tag="VLF16_03610"
     CDS             complement(<1..219)
                     /locus_tag="VLF16_03610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004373927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HSX69997.1"
                     /translation="MDTPSRLLVQGTSGDDLLVAPAQPTRLVGGAGNDILIDSPGSDA
                     FYPGAGANRLYGGLGNDYYMNQYSGGSQE"
     gene            complement(340..1485)
                     /locus_tag="VLF16_03615"
     CDS             complement(340..1485)
                     /locus_tag="VLF16_03615"
                     /inference="COORDINATES: protein motif:HMM:NF018319.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HSX69998.1"
                     /translation="MRFHRELIQGTPGDDLLVSKPAPSRLVGGEGDDVLLAGPGSTSL
                     DGGGGHNRLYGGPDVNYYVHHVENGGYDVIFNFGEPDSWEEVGDTLIVNAERESIHPI
                     ERMGHDLMIGIDGEPGRIVLKDFFLHSDFQLARFRFGTRYWDSEHMLEERFLVSRYGL
                     PLVPPKPLPIVYTGNLRRYDGTNGPDVLKVPRSVVAAHLSGHSGNDILLGGSGGDLLN
                     GGVSTPIFPGAASVDRLLGGLGDDYYQVDVVTGEDTSHQQIYDFDPSGPNLDTLHIRG
                     GIGLASVRFNGGPPGDLVLELPNEQRIVITNYFLHESFLVEKIRFDDGTVLDEADVRE
                     LMGLPAREAPQAGLLTPAHSSVAEAQPPASDGWLSLVLLASAALTGG"
     gene            complement(1589..2725)
                     /locus_tag="VLF16_03620"
     CDS             complement(1589..2725)
                     /locus_tag="VLF16_03620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012020015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HSX69999.1"
                     /translation="MADFSRVLVQGSNADDVLAARPEPSRLSGDYGNDVLIDSPGSDE
                     LNGGAGHNRLYGGAGNDYYVYEPTLGGRDEILDIDVLEPPDGGQLDTLIIGEGFESFG
                     PLERSRDDLLIGINGEPGVVVVKYFFRDPVFRIERFRFGSTVVSDDQVMRSFHLDPTR
                     AYAASDNFYYHTGDLVVLQSVWASRLVARDEATYLKGWRGDNILIGSRHGDVLDGGFS
                     EYYHFGEISWNQLYGGPGDDIYKVQLEMYGKPVNNQIYDYDPASGNVDTLYFQGAFDP
                     SLMRFSQGPSDDLMVETGYGHRLVIINYFLDKSFKVEKIRFDDGTVLNEADVHQRMGL
                     PVPVSPQASLSTPIPLSTLERPEPSSDGLLSLVLAAGAALTHSV"
     gene            complement(2855..>3583)
                     /locus_tag="VLF16_03625"
     CDS             complement(2855..>3583)
                     /locus_tag="VLF16_03625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004373927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HSX70000.1"
                     /translation="VFRFGATTITDEQVLRNFQIDPTMPLGRSADNPPSYTGDLIRLT
                     GNEFANRLVAADRPTYLLGRGGNDLLIGSRHGDVLNGGSSEPMFLGDNHWNRLYGGPG
                     DDYYQVDSAVDFGDHQIYDYDPTPGNVDTLQVRGDVGGAAGVYMNGAVGGDLIIELYN
                     EQRIVIDNYFLDRAFVVEKIRFDDGSVLDEAAIRQRVGLPPPVSPPQASLNMPQPASV
                     VEAPPPGDSWLSLVLLAGAALSGG"
BASE COUNT          716 a         1107 c         1124 g          636 t
ORIGIN      
        1 ctcctgggaa cccccagagt actgattcat gtagtaatcg ttgcccagcc cgccgtatag
       61 acggttggcg cccgcgcccg gatagaaggc atcggatccg ggactgtcga tcaggatgtc
      121 attgccggcg ccgccgacca ggcgagtggg ttgtgccggg gcgaccagaa ggtcgtcacc
      181 cgaagtgccc tgcacgagca ggcgagaggg agtgtccatg gcgggtcctc gtgaagtggg
      241 tgggaggcgc gccactgcac gaaggtccgc cagctcgacg agcatagagc agccgtttac
      301 cggctgccca tggacgccga gctgttcgtc ggacgccgct cagccgccgg tcagggccgc
      361 gctggcgagg agcaccaggc tcaaccagcc atcgctggcc ggcggctgcg cctcggccac
      421 gctggagtgg gccggcgtga gcagcccggc ctgcggcgcc tcgcgtgcgg gcaggcccat
      481 gagttcgcgc acatcggctt catccagcac cgtgccgtcg tcgaaacgga tcttctcgac
      541 cagaaaggat tcatgcagga agtagttggt gatgacgatg cgctgctcgt tcggcagctc
      601 gagcaccagg tctccggggg gaccgccatt gaaacgcacc gaggccaggc ctatcccacc
      661 ccggatatgc agggtgtcca ggttcgggcc gctagggtcg aaatcgtaga tctgctgatg
      721 gctggtgtcc tctccggtca cgacatcgac ctggtagtag tcatcaccca gcccgcccag
      781 cagccgatcg acgctggcgg ccccgggaaa gatgggggta gacaccccgc cattcagcaa
      841 gtcaccgccg ctaccaccca gcaagatgtc gttgccgcta tgccccgaca gatgagccgc
      901 gactacgctc cgtggcactt tcaacacgtc cgggccattg gtgccgtcgt agcgccgcag
      961 gttgccggtg tagacaatgg gcaacggctt gggcgggacc agtggaagcc cgtatcggga
     1021 caccagaaac cgctcctcca acatatgctc gctatcccag taccgggtgc cgaagcggaa
     1081 cctggccagc tgaaaatcgg agtggaggaa gaaatccttc aagacgattc tgcccggctc
     1141 gccgtcgatg ccaatcatca ggtcgtgacc catccgctcg atagggtgga tcgactcccg
     1201 ctcggcattg acgatgagcg tgtccccaac ctcttcccag gagtcaggct caccgaaatt
     1261 gaagatgacg tcgtatccgc cgttttccac atggtggacg tagtaattga cgtcggggcc
     1321 gccatacaga cggttgtggc caccgccacc gtcaagcgac gtcgagccgg ggccggcgag
     1381 cagcacatca tccccctcgc caccgaccag tcgactgggg gcgggtttgg agaccagcag
     1441 atcgtcacct ggggtacctt gaataagttc acgatgaaaa cgcatggcga gtcctcatgg
     1501 aaacgggatc gagcaccctg cgcagcggcg cacggcagct ggattcacgg gtgatcgata
     1561 aaaggattat tcgtcgtcac cgaatgggtc agacgctgtg ggtcaacgca gcgcctgcag
     1621 ccaataccag gctcagcaag ccatccgacg agggctcggg cctctcgagg gtgctcaggg
     1681 gtatgggtgt gctcagactc gcctgcggtg atacgggcac gggcaagccc atgcgctgat
     1741 ggacatcggc ctcgttcagg accgtaccgt cgtcaaagcg gattttttcg accttgaagg
     1801 acttgtcgag gaagtaattg ataatgacga ggcgatggcc atagcccgtc tctaccatca
     1861 aatcatccga tggcccctgg ctgaaacgca tcagagacgg gtcaaacgct ccttgaaaat
     1921 aaagcgtgtc gacattgccc gacgcgggat cgtaatcgta gatctggttg ttgactggtt
     1981 tgccatacat ctccagctgg accttgtaga tgtcatcccc cggcccgccg taaagctggt
     2041 tccagctgat ttcgccaaag tggtaatact cgctgaagcc gccatcgagc acgtcaccat
     2101 ggcgactgcc gatcaggata ttgtcgcctc gccagccctt cagataggtc gcctcatccc
     2161 tcgccacaag gcgtgaagcc cacaccgatt ggagtacgac caggtcaccc gtgtgatagt
     2221 agaaattgtc actggctgca taggccctgg ttggatcgag atgaaaactg cgcatcacct
     2281 gatcgtcgct caccacggtg gagccaaacc ggaatctttc gatacgaaac acggggtcac
     2341 ggaagaagta cttcacaacc acgacgcctg gctcaccgtt gatgccgatc agcagatcgt
     2401 cacgggagcg ctcgagcgga ccgaacgact cgaagccttc gccaatgatc aaggtatcga
     2461 gctggccacc atccggcggc tccagcacat cgatatcgag gatctcgtca cgcccgccga
     2521 gcgtcggctc gtagacgtag tagtcgttgc cggcgccgcc gtacaggcgg ttatggcctg
     2581 cgccaccgtt cagctcatcc gagccggggc tgtcgatcag cacgtcgtta ccgtagtcgc
     2641 cggatagacg gctgggttcg ggacgagcgg ccagcacatc gtcggcattg ctgccttgca
     2701 caagcacgcg agaaaagtcg gccatgatga gccctcataa gatggtttgc ggggacagcc
     2761 actgcacgaa agtcggcgag gcccgacgga tcagggcgac ctttcggagg ccgtccggca
     2821 ccatcaggct gctagccgaa aaccagaatc ccgctcagcc gcccgacaag gcggcaccgg
     2881 cgagcaatac caggctcagc cagctgtcgc ctggcggcgg cgcttcgacc acgctggcag
     2941 gctgcggcat gttcaggctg gcttggggag gtgatacggg tggcggcagg cccacacgct
     3001 ggcggattgc cgcctcgtcc agcacgctgc cgtcgtcgaa gcggatcttc tcgacgacga
     3061 aagcgcggtc gagaaagtaa ttgtcgataa cgatgcgctg ctcgttatac agctcgatga
     3121 tcaaatcgcc gcccacggct ccattcatat agacgcccgc cgccccgccg acatcgccgc
     3181 ggacctgcag ggtatcgaca ttgccgggcg tgggatcgta gtcgtagatc tggtggtcgc
     3241 cgaagtcgac agcggagtcg acctggtagt aatcatcgcc cggcccgccg tacaggcgat
     3301 tccagtggtt gtcgccgaga aacatcggct cgctgctgcc gccgttgagc acatcgccgt
     3361 ggcggctacc gattagcagg tcattgccgc cgcggcccag caggtaggtc ggccgatccg
     3421 ccgccaccag gcgattggca aactcgttgc cggtcaggcg gatcaggtcg ccggtgtagc
     3481 tcggcgggtt atccgcgctg cggccgagcg gcatcgtcgg gtcgatctgg aagttacgca
     3541 gcacctgctc atcggtgatg gtggtggcgc cgaagcggaa gac
//
LOCUS       DATIHC010000229         2786 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42646, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000229 DATIHC010000000
VERSION     DATIHC010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2786)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2786)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2786
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42646"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..241)
                     /locus_tag="VLF16_03630"
     CDS             complement(<1..241)
                     /locus_tag="VLF16_03630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014597451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HSX70001.1"
                     /translation="MAKLRIATFNINGIQSRLPALLAWLQREAPDIVCLQELKADDRK
                     FPADDIRAAGYGVIWRGQTSWNGVAILAKGLEPLEI"
     gene            391..1164
                     /locus_tag="VLF16_03635"
     CDS             391..1164
                     /locus_tag="VLF16_03635"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019364570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSX70002.1"
                     /translation="MGTLSGRIAIITGSDSGMGRAMAIAFAREGADVAITYHSDREGA
                     QATSEAVSSHGRRSLLRQLDVGDEGSVVGLFKTVVEQLGTPDLLVNNAGIGMSKAFVD
                     LSADDFDKVLRVDLRGPFLCSREFVRLRQAEGGGGRIINITSVHDSIPSPGNVPYGAA
                     KGGLLTMTRSLALELAPLRINVNAVAPGLIATPMTQARLDDPQRRAEELPNIPWKRPG
                     RPEEVAELALYLAGPHADYITGQNFVIDGGLEMNWGQGA"
     gene            1187..>2786
                     /locus_tag="VLF16_03640"
     CDS             1187..>2786
                     /locus_tag="VLF16_03640"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HSX70003.1"
                     /translation="MARNGADILIETLIAFGVDTIYGMPGDGINGIMEAIRTHGDKVR
                     FIQVRHEESAAFAAVAHAKFGGGLGCCLATTGPGGTHLLTGLYDAKFDRAPVIAITGS
                     PYHDLSDSYTQQDIDHCRLFMDVAAYSARVMGARHMENAATLACRHALAQRGVAHLAV
                     PVDVQEEKEADDAPSSRNVQHHVSLARVPLPRCPAEGIERAAELLNAGERVAILAGQG
                     ALDAADLLLETAELLGAPIVKALLGKGLVADGHPLTTGGIGLLGTRPSQEAMEACDTL
                     LIVGSTFPYIEYYPKPEQTRGVQIDLDPTRIGLRFPVEVGLAGDARATLEQLNRLLRR
                     KADRSFLERAQQGYRDWRALLRDACERQATPMPPGRIVRDVGDRLDEDAIVVWDSGHN
                     TGLMARYVEAKPGQLYGGSGLLASMACAVPYAIAAALVHPGRQVVAFTGDGGLSMLLG
                     ELVTITRYRLPIKLVVIKNNSLGQIKWEQMMFLGNQETECDLTPIDFAKAAEACGLRS
                     WRVEDPAHSVEVAEALLACEGAGLV"
BASE COUNT          428 a          999 c          968 g          391 t
ORIGIN      
        1 ggatctccag cggctccagg cctttggcca ggatcgccac gccgttccac gaggtctgcc
       61 cgcgccagat caccccgtag ccggcggcgc ggatgtcgtc ggcgggaaac ttgcggtcgt
      121 cggccttgag ctcctgcagg cagacgatgt ccggcgcctc gcgctgcagc caggccagca
      181 gggcgggcag ccgcgactgg atgccgttga tgttgaaggt ggcgatgcgg agcttggcca
      241 aggctgcctc ggatgacagg agatgacgcc tttaggattc gcccgccgcg gccggagttc
      301 aggcaaccgc cggtgcgctg gcgacgatgg gccgaaccct ttgccgccgg gccgagtcac
      361 tagccatagg ttccattctc ggaggcagtc atgggcacac tcagcgggcg tatcgccatc
      421 atcaccggtt ccgattccgg catgggccgg gccatggcca tcgccttcgc ccgcgagggt
      481 gcggacgtgg ccatcaccta ccacagcgac cgcgagggcg cccaggccac cagcgaggcg
      541 gtgtcgagcc atggccggcg cagcctgttg cggcagctcg acgtgggcga cgagggcagc
      601 gtggtcggac tgttcaagac ggtggtcgag cagctcggca cgcccgacct gctggtcaac
      661 aacgccggca tcggcatgag caaggccttc gtcgacctga gcgcggacga cttcgacaag
      721 gtgctgcggg tcgacctgcg cgggccgttc ctctgctcgc gcgagttcgt gcgcctgcgc
      781 caggccgagg gcggcggcgg gcggatcatc aacatcacgt cggtgcacga ctcgattccc
      841 agccctggca acgtgcccta tggcgcggcc aagggcggcc tgctgaccat gacccgcagc
      901 ctggcgctgg agctggcgcc gctgcggatc aacgtcaacg ccgtcgcccc cgggctgatc
      961 gccacgccga tgacccaggc gcggctggat gatccgcagc ggcgcgccga ggagctgccc
     1021 aacattccct ggaagcgtcc cgggcggccc gaggaagtgg cggagctggc gctgtacctg
     1081 gctggcccgc acgccgacta catcaccggc cagaacttcg tcatcgacgg tggcctggaa
     1141 atgaactggg gccagggcgc ctgacgcgcc cggccggaga ctcctcatgg cccgcaacgg
     1201 cgcagacatc ctgatcgaga cgctgatcgc cttcggcgtc gacaccatct acggcatgcc
     1261 cggcgacggc atcaacggca tcatggaggc gatccgcacc cacggcgaca aggtgcgctt
     1321 catccaggtc cgccatgagg agtccgccgc cttcgccgcg gtggcccacg ccaagttcgg
     1381 cggcggcctc ggctgctgcc tggccaccac cggcccgggc ggcacccatc tgctcaccgg
     1441 cctgtacgac gccaagttcg accgcgcgcc ggtcatcgcc atcaccggct cgccgtacca
     1501 cgacctgagc gacagctaca cccagcagga catcgaccac tgccgcctgt tcatggacgt
     1561 ggccgcctat tcggcacggg tgatgggcgc gcggcacatg gagaacgccg ccaccctggc
     1621 ctgccgccac gcactggcgc agcgcggcgt ggcgcacctg gcggtgccgg tggacgtgca
     1681 ggaggagaag gaggcggacg acgcgccgtc cagccgcaac gtgcagcatc acgtgtcgct
     1741 ggcccgggtg ccgttgccac gctgcccggc cgagggcatc gagcgcgccg ccgagctgct
     1801 caatgccggc gagcgggtgg ccatcctcgc cggccagggc gcgctggacg ccgccgacct
     1861 gctactggaa accgccgagc tgctgggcgc gcccatcgtc aaggcgctgc tcggcaaggg
     1921 cctggtggcc gacgggcatc cgctgaccac cggcggcatc ggcctgctcg gcacccgccc
     1981 gagccaggag gcgatggagg cctgcgacac cctgctgatc gtcggctcga ccttccccta
     2041 catcgagtac taccccaagc cggagcagac ccgcggtgtg cagatcgacc tcgaccccac
     2101 gcgcatcggc ctgcgctttc cggtggaggt gggtctggcc ggcgatgccc gcgccaccct
     2161 ggagcagctg aaccgcctgc tgcggcgcaa ggccgaccga agctttctcg aacgcgctca
     2221 gcagggctac cgcgactggc gggcgctgct gcgcgacgcg tgcgagcgcc aggccacgcc
     2281 gatgccgccc ggacgcatcg tgcgtgacgt cggcgaccgc ctggacgagg acgccatcgt
     2341 ggtctgggac tccggccaca acaccgggct gatggcccgc tatgtcgagg ccaagcccgg
     2401 ccagctgtac ggcggctccg gcctgctggc ctcgatggcc tgcgccgtgc cctacgccat
     2461 cgccgccgcc ctggtacacc ccggccgcca ggtggtcgcc ttcaccggcg acggcggcct
     2521 gagcatgctg ctcggcgagc tggtgaccat cacccgctac cgcctgccga tcaagctggt
     2581 ggtgatcaag aacaacagcc tggggcagat caagtgggag cagatgatgt tcctcggcaa
     2641 tcaggagacc gagtgcgacc tcacgcccat cgacttcgcc aaggccgccg aggcctgcgg
     2701 cctgcgcagc tggcgggtgg aggacccggc gcacagcgtc gaggtcgccg aggcgttgct
     2761 ggcctgcgag ggcgccggcc tggtcg
//
LOCUS       DATIHC010000230         2857 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35773, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000230 DATIHC010000000
VERSION     DATIHC010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2857)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2857)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2857
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35773"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..528)
                     /locus_tag="VLF16_03645"
     CDS             complement(<1..528)
                     /locus_tag="VLF16_03645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HSX70004.1"
                     /translation="MSYTVAVRALCEFTAKEGDLDLRFTPAPTAAEGMAGHATVVGRR
                     GAGYLAELPLAGDYPGLLVSGRADGYDPERNLLEEIKTHRGDVARIPDNHRKLHWAQV
                     KVYGWLLCDALELPQIDLAVVYFNVLTQKETAFRERFTVEDLREFFELQCARFVAWAE
                     QETAHRVARDASLETL"
     gene            complement(525..2165)
                     /locus_tag="VLF16_03650"
     CDS             complement(525..2165)
                     /locus_tag="VLF16_03650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010446236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VRR-NUC domain-containing protein"
                     /protein_id="HSX70005.1"
                     /translation="MSAPLDPSLYYLGNFHTALAWIGERYGDLLGDDELAFLQAFAEL
                     PQPSQALLVRLIMRKGPHFRASKLSYAEIGDIATAAEPLLRLGWLIEDAVLELAELFA
                     LLRKDELIARFDELAALRAAKKSEQLLALLPLYSEALPFAHWCPRLDRLYSLTAGPLC
                     DRLRLLFFGNLAQDWSEFVLAELGIYRYETVEIGPDARGFRSRRDVDDYLHLQHCRDL
                     FEAGLPVAEVLDQLGEFSSDNPHLARRHAKLLFRLGQQLEREGELPAAAALYAVSLHD
                     EARRRRVRVLEKLGAFRQAHDLAILALTAPRNDAEAQALERALPRLQRQLGLPKQPRR
                     APAEAGLIELELPQPDAFSVEWAVQQHLHDEGAPAFYVENTLVCGLFGLLCWEAIFAP
                     LPGAFFHPFHAAPVDLHDADFRSRREALFARCLARLDDGSHAEAIRATYAAKYGVVSP
                     FVHWTVLTPELLETALHCLPPAHLRAWFERLLGDIRANRAGMPDLIQFWPAERRYRMI
                     EVKGPGDRLQDNQKRWLDFCARHGMPVDVCYVRWSAPA"
     gene            2335..2565
                     /locus_tag="VLF16_03655"
     CDS             2335..2565
                     /locus_tag="VLF16_03655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016492813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70006.1"
                     /translation="MAQWIISYSKDNNTATLEMQADGKPDMEAAVRHVLAWAEANLEK
                     GDFGDVHDRESDEPAVLLLRHYGITLTGISAA"
     gene            2735..>2857
                     /locus_tag="VLF16_03660"
     CDS             2735..>2857
                     /locus_tag="VLF16_03660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012698919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KGG domain-containing protein"
                     /protein_id="HSX70007.1"
                     /translation="MADNKGNKMSVEEAGRKGGESTSASHDKEFYQEIGSQGGRN"
BASE COUNT          474 a          936 c         1029 g          418 t
ORIGIN      
        1 cagcgtctcc aggctggcgt cgcgggccac gcggtgggcg gtctcctgct cggcccaggc
       61 gacgaagcgc gcgcactgca actcgaagaa ttcgcgcagg tcttcgacgg tgaagcgctc
      121 gcgaaacgcc gtctccttct gcgtgagcac gttgaagtac accaccgcca ggtcgatctg
      181 cggcagctcc agcgcgtcgc acagcagcca gccgtagacc ttgacctggg cccagtgcag
      241 cttgcggtgg ttgtccggga tgcgcgccac gtcgccgcgg tgggtcttga tctcttccag
      301 cagattgcgc tcggggtcgt agccgtcggc gcggccgctg accagcaggc ccggatagtc
      361 gccggccagc ggcagctcgg ccaggtagcc ggcgccgcgc cggccgacca ccgtggcgtg
      421 cccggccatg ccttcggcgg cggtgggcgc gggggtgaag cgcaggtcga ggtcaccctc
      481 cttggcggtg aactcgcaca gcgcgcgcac ggccacggtg taactcacgc cggcgcgctc
      541 cagcgcacgt agcagacgtc caccggcatg ccgtggcggg cgcagaaatc cagccagcgc
      601 ttctggttgt cctgcaggcg gtcgccgggg cccttgacct cgatcatccg gtagcgccgc
      661 tcggccggcc agaactggat caggtccggc atgccggcgc ggttggcgcg gatatcgccg
      721 agcaggcgct cgaaccaggc gcgcaggtgc gccggcggca ggcagtgcag ggcggtctcc
      781 agcagctcgg gggtgagcac cgtccagtgc acgaacggcg agacgacgcc gtacttggcg
      841 gcgtaggtgg cgcggatcgc ctcggcgtgg ctgccgtcgt cgaggcgcgc caggcagcgc
      901 gcgaacagcg cctcgcggcg cgagcggaag tcggcgtcgt gcaggtccac cggggcggcg
      961 tggaaggggt ggaagaaggc gccgggcagc ggagcgaaga tcgcctccca gcacagcagg
     1021 ccgaacaggc cgcagaccag ggtgttctcc acgtagaagg ccggcgcacc ctcgtcgtgc
     1081 aggtgctgct gcaccgccca ctccacgctg aaggcgtccg gctgcggcag ttccagctcg
     1141 atcagcccgg cctcggccgg cgccctgcgc ggctgcttgg gcaggccgag ctggcgttgc
     1201 aggcgcggca gggcgcgctc cagggcctgg gcctcggcat cgttgcgcgg cgcggtgagc
     1261 gcgaggatgg ccaggtcgtg ggcctgccgg aatgcgccga gcttctccag cacgcgtacg
     1321 cggcggcggc gggcttcgtc gtgcaggctg accgcataca gcgccgcggc tgccggcagt
     1381 tcgccctcgc gctccagctg ctggccgagg cggaacagca gcttggcatg acgcctggct
     1441 aggtgcgggt tgtcgctgct gaactcgccc agttggtcga gcacctcggc gaccggcagg
     1501 ccggcctcga acaggtcgcg gcagtgctgc aggtgcaggt agtcgtcgac atcgcggcga
     1561 ctgcgaaagc cgcgggcgtc ggggccgatc tcgaccgtct cgtagcggta gatgcccagc
     1621 tcggcgagga cgaactccga ccagtcctgc gccaggttgc cgaagaacaa caggcgcagg
     1681 cggtcgcaca gcggtccggc ggtcaggctg tagagtcggt ccagccgcgg gcaccagtgg
     1741 gcgaacggga gggcctcgct gtacagcggc agcagggcca gcaactgctc gctcttcttc
     1801 gcggcgcgca gggcggcgag ttcgtcgaag cgggcgatca gctcgtcctt gcgcagcagg
     1861 gcgaacagct ccgccagttc cagcacggcg tcctcgatca gccagcccag gcgcagcagg
     1921 ggctcggcgg cggtggcgat gtcgccgatt tccgcgtagc tcagcttgct cgcgcgaaag
     1981 tgcgggccct tgcgcatgat caggcgcacc agcagcgcct gcgagggctg cggcagttcg
     2041 gcgaaggcct gcaggaaggc cagctcgtca tcgcccagca ggtcgccgta gcgctcgccg
     2101 atccaggcca gtgccgtgtg gaagttgccg aggtagtaga ggctggggtc gagtggcgcg
     2161 gacatggtga ttactgtctt tatatacagt caatggtgcg cgacgccggc gccgcgagca
     2221 accccggccc gaccgcctgt actgccgttc ggcttgcggc ctgaaccctt gctcgcgggc
     2281 atagctcgaa accggtaggc agacgtctgc cgtgcccttt tgcaggagat caccatggcc
     2341 caatggatca tcagttacag caaggacaac aacaccgcga ccctggagat gcaggcggac
     2401 ggcaagcccg acatggaagc ggcagtgcgc catgtgctcg cgtgggccga ggccaatctg
     2461 gagaagggcg atttcggcga cgtgcacgac cgcgaaagcg acgagccggc ggtgctgctg
     2521 ctgcgccatt acggcatcac cctgaccggc atctcggcgg cttgaaacgc gccgtttcgc
     2581 ctcagcgaac cggcgctgga gcgttcgtcc gtatcttgga aaatacatga aaccggcacc
     2641 ctcgccgccg actcactcag ttgtaagcca tgcattcgca gcccaacggc agcgggcttc
     2701 ccaaacaact gatcgaagct agatggagga ttccatggct gataacaaag gcaacaagat
     2761 gagcgtcgag gaagcaggcc gcaaaggtgg cgaaagcact tccgccagcc acgacaagga
     2821 gttctaccag gagatcggca gccagggtgg ccggaac
//
LOCUS       DATIHC010000231         1878 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30987, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000231 DATIHC010000000
VERSION     DATIHC010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1878
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30987"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..153)
                     /locus_tag="VLF16_03665"
     CDS             complement(<1..153)
                     /locus_tag="VLF16_03665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017675567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="geranyl transferase"
                     /protein_id="HSX70008.1"
                     /translation="MIGAYQQRCQARVDAALEELFDAPRSELARLYQAMRYSVVNGGK
                     RVRPLLV"
     gene            complement(150..389)
                     /locus_tag="VLF16_03670"
     CDS             complement(150..389)
                     /locus_tag="VLF16_03670"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HSX70009.1"
                     /translation="MARKKAVDFETSLAELQSLVERLESGELSLEDSLGAFEQGIRLT
                     RECQASLAQAEQKVQQLLERDGELEEVPFDADPQA"
     gene            complement(505..1212)
                     /locus_tag="VLF16_03675"
     CDS             complement(505..1212)
                     /locus_tag="VLF16_03675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003249494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PqiC family protein"
                     /protein_id="HSX70010.1"
                     /translation="MRLLRLPTVLLLTGLLGLVGCTAHQPVPLYQLDNGNAEIPSQTQ
                     GVSVLLGPVSVADYLQRESLLQRQNDGSLLAADDARWAGNLAADIDQLLLRQLAWRLD
                     SQRTVLAPTSAEFKPDVQVLLNIIRLDSGPSHPAVLEAQWRLLDRSGQLRDSHLLRLE
                     EAHSGTTADQVQAQSRLLRQLAQRLAAAIEPLRNQPIAEATKPTPAPQRAAKPQAAEP
                     KIPLVAPTRSSGEVLRF"
     gene            complement(1331..>1878)
                     /locus_tag="VLF16_03680"
     CDS             complement(1331..>1878)
                     /locus_tag="VLF16_03680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012274476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA gyrase C-terminal beta-propeller
                     domain-containing protein"
                     /protein_id="HSX70011.1"
                     /translation="GQGEPLTGRLTPPPGASFDCVLLPDDSALYVIASDAGYGFVVKG
                     EDLQAKNKAGKALLSLPNGAQVVPPKPVASVENDWLAAVTTEGRLLLFKVADLPQLGK
                     GKGNKIIGIPGERVASREEYLTDLAVLPAGATLVLQAGKRTLSLKPDDLEHYKGERGR
                     RGNKLPRGFQRVDALQVEAPA"
BASE COUNT          242 a          630 c          698 g          308 t
ORIGIN      
        1 gaccagtagc gggcgcaccc gcttgccgcc gttgaccacg ctgtagcgca tggcctggta
       61 aaggcgggcc agctcgctgc ggggggcgtc gaagagttct tccagggcgg cgtcgacccg
      121 cgcctggcag cgctgctggt aggcgccgat catgcctgcg ggtccgcgtc gaagggcact
      181 tcctccagtt cgccgtcgcg ctcgagcagc tgctgcacct tctgctcggc ctgggccagg
      241 gaggcctggc actcgcgggt caggcggatg ccctgctcga aggcgcccag cgaatcttcc
      301 agcgacagtt cgccgctctc caggcgctcg accaggctct gcagctcggc gagggaggtt
      361 tcgaagtcga cggctttctt gcgggccatg ggcgggtctc ggcggaaaat gaggtcgggc
      421 gcgacactag cagagcgccg cgtggcgggg caaaccggcc agggcgagca ggttggcgat
      481 ggcgcccgcc gctcgccggc gcggtcagaa gcgcagcact tcgccgctgc tgcgggtcgg
      541 tgcgaccagc gggatcttcg gttccgcggc ctgcggcttg gccgcccgct gcggtgccgg
      601 cgtcggcttg gttgcctcgg cgatcggctg gttgcgcagc ggctcgatgg ccgcggccag
      661 gcgctgggcc agttggcgca gcaggcggct ctgcgcctgc acctggtccg cggtggtgcc
      721 gctgtgggcc tcttccagac gcagcaggtg gctgtcgcgc agctggccgg aacggtccag
      781 caggcgccac tgggcctcga gcacggccgg gtgggacggg ccggaatcca ggcggatgat
      841 gttcagcagc acctgtacgt ccggtttgaa ttcggcgctg gtgggggcca gcacggtgcg
      901 ctggctgtcc aggcgccagg ccagctggcg cagcagcagc tggtcgatgt cggcggcgag
      961 gttgccggcc cagcgggcat cgtcggcggc cagcaggctg ccatcgttct ggcgttgcag
     1021 cagggattcg cgctgcaggt agtcggccac cgagacgggg ccgagcaata cggacacgcc
     1081 ctgggtctgg ctggggatct cggcgttgcc gttgtccagc tgatacagcg gtaccggttg
     1141 gtgcgccgtg cagccgacca ggccgagcag gccggtcagc agcaatacgg tggggaggcg
     1201 cagcagtctc atcttttcac ctgggccgcg ggcggccgga atctacgtca aggccgcaca
     1261 tgatccgtca aagtcgccgc agactccagc ccgcggcgct ctacggcacg gcttgccgct
     1321 gcgcttgggc tcaggcaggc gcctctacct gcagcgcatc gacccgctgg aagccgcgtg
     1381 gcagcttgtt gccacgccgc ccgcgctcgc ccttgtagtg ctccagatcg tcgggcttga
     1441 gcgacagggt gcgcttgccg gcctgcagca ccagggtggc gccggcgggc agcacggcca
     1501 ggtcggtgag gtattcctcg cgactggcca cgcgctcccc ggggatgccg atgatcttgt
     1561 tgcccttgcc tttgcccagt tgcggcaggt cggcgacctt gaacagcagc aggcgaccct
     1621 cggtggtcac cgccgccagc cagtcgttct cgacgctggc caccggcttg ggcggcacca
     1681 cttgcgcgcc gttgggcagg ctgagcagcg ccttgccggc cttgttcttg gcctgcaagt
     1741 cctcgccctt gaccacgaag ccgtagccgg cgtcggaggc gatcacgtac agcgcgctgt
     1801 cgtccggcag cagcacgcag tcgaagctcg cgcccggtgg cggggtcagg cggccggtca
     1861 gcggctcgcc ctggcccc
//
LOCUS       DATIHC010000232         2521 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42662, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000232 DATIHC010000000
VERSION     DATIHC010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2521
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42662"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2082)
                     /gene="hrpB"
                     /locus_tag="VLF16_03685"
     CDS             complement(<1..2082)
                     /gene="hrpB"
                     /locus_tag="VLF16_03685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012699654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase HrpB"
                     /protein_id="HSX70012.1"
                     /translation="MNRLPIDDVLPALRAALAERHETVLEAPPGAGKTTRVPLALLHE
                     PWLAGQSILMLEPRRLAARAAAERLASELGEKVGETVGYRIRLDSKVGPKTRIEVVTE
                     GILARRLQDDPALEGVGLVIFDEFHERSLDADLALALTLNGRALLRDEPPLKVLLMSA
                     TLEGERLSALLDGAPVVSSEGRMHPVEMRWGVPWQLGERIEPRVVQTVLQALADEPGS
                     LLVFLPGQAEIRRVAEQLEQSLGGRPDILLCPLHGELELSAQRAAIEPAPSGRRKVVL
                     ATNIAETSLTIDGVRVVVDAGLARVPRFDPASGMTRLDTQRISRASATQRAGRAGRLE
                     PGVCYRLWSQTQHEQLAAYGAAEILAADLAGLALQLARWGVAPDELAFLDAPPAAAFA
                     QGRDLLTRLGALDPRGALNSHGQAMAELPAHPRIAHLLLRGQALGLGALAADLAALLG
                     ERDILRGAGADLHSRMALLAGESRAAGGSRGGVQRARQLARQFRGYLRGQADEAVADP
                     EHPRWLGALLAFAYPDRVARQRGKGGGDYRLANGRAALFGEPDALMKHEWLVIADLGS
                     RQGQRDERIYLAADLDPALFDSVLAEQVTVREELEWDEREGVLRAERQRRVGELVLSR
                     EALTGLDEAARGRALLGLVRKGLELLPWTPELRQWQARVALLRGLDLAQKGESEWPDL
                     SDAALLAFAYPD"
     gene            2207..>2521
                     /locus_tag="VLF16_03690"
     CDS             2207..>2521
                     /locus_tag="VLF16_03690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003292627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HSX70013.1"
                     /translation="MRMHSRVIGGVLAATLLTQLAACGTLFFPDRRGQIEGKVDPLVV
                     GLDAIGILFYVIPGLIAFGVDFATGAIYLPNDQYSVAPEKLRDAIGDDGRVDPLKLKA
                     ILY"
BASE COUNT          357 a          941 c          888 g          335 t
ORIGIN      
        1 gtcgggatag gcgaaggcca gcagcgcggc gtcgctcagg tccggccatt cgctctcgcc
       61 cttctgcgcc agatccagac cgcgcaacag cgcgacccgc gcctgccact ggcgcagctc
      121 gggcgtccag ggcagcagtt ccaggccctt gcgcaccagg ccgagcaacg cgcggcctcg
      181 cgcggcctcg tccaggccgg tgagcgcctc gcggctcagc accagctcgc cgacccggcg
      241 ctggcgctcg gcacgcagca caccctcgcg ctcgtcccac tccagttcct cgcgcaccgt
      301 cacctgctcg gcgagcaccg agtcgaacag ggccggatcg aggtcggcgg ccagatagat
      361 gcgttcgtcg cgctggccct ggcgactgcc gaggtcggcg atcaccagcc actcgtgctt
      421 catcagcgca tccggctcgc cgaacagcgc ggcgcggccg ttggccaggc ggtagtcgcc
      481 gccgcccttg ccgcgctggc gggcgacccg gtcgggatag gcgaaggcca gcagcgcgcc
      541 gagccagcgc gggtgttcgg ggtcggccac ggcctcatcg gcttggccac gcagatagcc
      601 acggaactgc cgggccagct ggcgggcgcg ctgcacgccg ccacgcgaac cgccagcggc
      661 gcgcgactcg ccggccagca gcgccatgcg actgtgcagg tcggcgccag cgccacgcag
      721 gatgtcgcgt tcgccgagca gcgccgccag gtccgccgcc agcgcgccga gacccagagc
      781 ctggccacgc agcagcagat gagcgatgcg cggatgcgcc ggcagctcgg ccatggcctg
      841 gccgtggctg ttcagcgcgc cgcgcgggtc gagcgcgccg aggcgtgtca gcaggtcgcg
      901 gccctgggcg aaggcggcgg ccggcggcgc gtcgagaaag gccagctcgt ccggggcgac
      961 gccccagcgc gccagctgca gggccaggcc ggccaggtcg gccgccagga tctccgcggc
     1021 gccgtaggcg gccagctgtt cgtgctgggt ctgcgaccac aggcgatagc acacgcccgg
     1081 ctccaggcgc ccggcacggc cggcgcgctg ggtagccgag gcgcgggaaa tgcgctgggt
     1141 gtccaggcga gtcatgccgc tggccgggtc gaagcgcggc acccgcgcca ggccggcgtc
     1201 caccaccacg cgcacgccgt cgatggtcag gctggtctcg gcgatattgg tggcgagcac
     1261 caccttgcgc cgccccgatg gcgccggttc gatggccgca cgctgggcgc tcaattccag
     1321 ttcgccatgc agcggacaga gcaggatgtc cgggcggccg ccgaggcttt gctccagctg
     1381 ctcggccacc cggcggatct ccgcctggcc gggcaggaac accagcaggc tgcccggctc
     1441 gtcggccagg gcctgcagca ccgtctgcac cacccgcggc tcgatgcgct cgcccagctg
     1501 ccagggcacg ccccagcgca tctccaccgg gtgcatgcgg ccctcgctgg aaaccaccgg
     1561 cgcgccgtcg agcagcgcgg acaggcgctc gccctccagg gtcgcggaca tcagcaacac
     1621 cttcagcggc ggctcgtcgc gcagcagcgc acgtccgttg agcgtcagtg ccagggccag
     1681 atccgcatcg aggctgcgct catggaattc gtcgaagatc accaggccga cgccctccag
     1741 cgccggatcg tcctgcaggc ggcgggcgag gatgccctcg gtgaccacct cgatgcgggt
     1801 cttcgggccg accttgctgt cgaggcggat gcggtagccc acggtctcgc caaccttttc
     1861 gcccagttcg ctggccaggc gctcggccgc ggcgcgggcg gccaggcggc gcggctccag
     1921 catcaggatg gactgcccgg ccagccaggg ctcgtgcagc agggccagcg gcacgcgggt
     1981 ggtcttgccg gcgccggggg gcgcctccag cacggtttcg tggcgctcgg ccagggcggc
     2041 gcgtagggcg ggcagtacgt cgtcgatggg caggcggttc atgggctctc caaaacagcc
     2101 ggcgattata ggcgctgcgg caacccggtc gaaccgcaac gccggccggg catccaactg
     2161 caatgacggc cttgatatag tgccgcacca tttccaggag gtgcccatgc gcatgcattc
     2221 ccgcgtcatc ggcggcgttc tcgccgcgac cctgctgacc caactggccg cctgcggcac
     2281 gctgttcttc cccgatcgcc gcgggcagat cgagggcaag gtcgacccgc tggtggtcgg
     2341 cctcgatgcc atcggcatcc tgttctacgt gatccccgga ctaatcgcct tcggcgtcga
     2401 cttcgccacc ggcgccatct acctgcccaa cgaccagtac tcggtggcgc cggagaaact
     2461 gcgcgatgcc atcggcgacg acggccgcgt cgacccgctc aagctcaagg ccatcctcta
     2521 c
//
LOCUS       DATIHC010000233         1808 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12263, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000233 DATIHC010000000
VERSION     DATIHC010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1808
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12263"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(58..999)
                     /locus_tag="VLF16_03695"
     CDS             complement(58..999)
                     /locus_tag="VLF16_03695"
                     /inference="COORDINATES: protein motif:HMM:TIGR01414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HSX70014.1"
                     /translation="MGLRGWAGWMLMVAAHCAWADGQLLLDQRALLLDDGRLPREAAL
                     DRLQQVRFAFREPLAEPGRWPLWIRTQGNRGRWDGGLERHAEAVTLGLDRPLGGQWVG
                     GGLIALSRARVDSDGGAADSESTHLGLYAATRVYNQLGFKLGVMHGRHRLDGGADHAG
                     ARSWQLFGESSFALDFRDFTLEPFAGLALIRLDSAALAQGGARLAGADEEGGYLSLGW
                     RLAAPWYWQQRKWVGRASLALRQDLGGDRLNGEVLAADGETLRLQGREFERSTLRLDL
                     SLDHALRDDLYLGLSYAGDYAEDARDHALAARLSLRF"
     gene            1271..>1808
                     /locus_tag="VLF16_03700"
     CDS             1271..>1808
                     /locus_tag="VLF16_03700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013790264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HSX70015.1"
                     /translation="MRPSFSLRSHFALLIALLVTLLSWLLGTLIGNDASQRIREEVGR
                     DLVEVSLQMIDRLDRDMAGRAAYLQVLGSLQVLRQPKNAGEIRTLLDRLQQEIPSIAW
                     IGFTDPYGKVLASSNGILEGVSLAQRPVYIQGYRGLFIGDVHEAVLLAKLLPVQEGEP
                     RRFVDVAFPYMDAAGKPAG"
BASE COUNT          257 a          665 c          626 g          260 t
ORIGIN      
        1 gcccgcaggc tgaccggcgg gccgctccgc tcgatcggcc acgcgagcac gcggccgcta
       61 gaacctcagg ctcagccgcg cggccagggc gtggtcgcgg gcgtcctcgg cgtagtcgcc
      121 ggcgtagctc aggccgaggt agagatcgtc gcgcagcgcg tgatccagac tcaggtccag
      181 ccgcagggtg ctgcgctcga attcgcggcc ctgcaggcgc agggtctcgc cgtccgcggc
      241 gagcacctcg ccgttcaggc ggtcgccgcc gagatcctgg cgcagtgcca ggctggcgcg
      301 accgacccat ttgcgctgct gccagtacca gggcgcggcc aggcgccagc cgaggctgag
      361 gtagccgccc tcctcgtccg ccccggccag acgcgcgccg ccctgtgcga gggcggcgct
      421 gtccaggcga atcagggcca ggccggcgaa cggctccagg gtgaagtcgc ggaaatccag
      481 ggcgaagctg ctctcgccga acagctgcca gctgcgtgcg ccggcgtggt cggcgccgcc
      541 gtccagacgg tgccggccat gcatgacgcc gagtttgaag cccagctggt tgtacacgcg
      601 ggtggcggcg tagaggccga ggtgcgtgct ttcgctgtcc gccgcgccgc cgtcgctgtc
      661 cacacgggcg cgtgacagtg cgatcaggcc accgccgacc cactggccgc cgagcggtct
      721 gtccaggccg agggtcaccg cctcggcatg ccgttccagg ccgccatccc agcgcccgcg
      781 gttgccctgg gtgcggatcc acaacggcca ccggcccggc tcggccagcg gctcgcggaa
      841 ggcgaaacgc acctgctgca ggcgatccag cgccgcctcg cgcggcaggc ggccatcatc
      901 cagcagcagc gcgcgctgat cgagcagcag ctggccgtcg gcccatgcgc agtgcgccgc
      961 caccatcagc atccatccgg cccaacccct cagtcccatg tcgccctcct cggccggcgg
     1021 ccagtctagc agggccgcgg gcgggcgccg cgtcggttgc cgcgccccgg cggctggata
     1081 aacggcaccg gaccgctcgc tggaagtggg atgcgtggcg cgttgcgcag cgaaaaattt
     1141 gaagattgcg cgggggttgt gtggaatgcc gttgcgccgt agccggacta ttctgcaact
     1201 ggaaacggcc ccgtttccgc tgcaccgcgc caggcgagca gcccccgtcc tgcattcgga
     1261 gccgccggcc atgcgcccct cgttcagcct tcgcagccac ttcgccctgc tcatcgccct
     1321 gctggtcacc ctgctcagct ggctgctcgg cacgctgatc ggcaacgacg ccagccagcg
     1381 catccgcgag gaggtgggcc gcgacctggt tgaagtgtcg ctgcagatga tcgaccgcct
     1441 ggatcgcgac atggctggcc gcgccgccta cctgcaggtg ctcggcagcc tgcaggtact
     1501 gcgccagccc aaaaacgccg gcgagatccg cacgctgctc gaccgccttc agcaggaaat
     1561 ccccagcatc gcctggatag gcttcaccga tccctacggc aaggtgctgg cgtccagcaa
     1621 cggcattctc gagggcgtga gcctggcgca gcgtccggtc tatatccagg gttaccgcgg
     1681 cctgttcatc ggcgacgtgc acgaggcggt gctgctggcc aagctgctgc cggtgcagga
     1741 gggcgagccg cgccgcttcg tcgacgtcgc cttcccctac atggacgccg ccggcaagcc
     1801 ggccggcg
//
LOCUS       DATIHC010000234         3020 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5482, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000234 DATIHC010000000
VERSION     DATIHC010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3020
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5482"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(124..1611)
                     /locus_tag="VLF16_03705"
     CDS             complement(124..1611)
                     /locus_tag="VLF16_03705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014819898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monovalent cation/H+ antiporter subunit D"
                     /protein_id="HSX70016.1"
                     /translation="MNHLLILPILLPLMCGALLLVLPSREWLKRALSLLATLALVPLA
                     VVLLLQADDGQLHVYALGDWRPPFGIVLLLDRLSALLLLAAAVLGSAVALYALRGDDR
                     LGPRFHSLLQFQLLGINGSFLTGDLFNLFVFFEILLIASYALLLHGSGAERVRAGLHY
                     VVLNLTGSALFLIALGLIYGVSGTLNMADLSARVATASGDQVPLLAAAGLLLLLVFAL
                     KAALLPLYFWLPRAYAAASAPVAALFAIMTKVGIYAVLRVCTLVFGDGAGELANLAQA
                     WLWPLALATVALGALGALAAQDLRLLIAYLVLVSAGTLLAAVAAGSPEAHAAALYYLL
                     HSTWVAGGLFLLADLIARQRGSKGSALVPGAALEHPALLGALFFFGAVAVVGLPPLSG
                     FLGKLLLLKAVPSVALWTVLLLAGFATLIAFSRAGSTLFWRVGLRSLDSAELDIGRLG
                     ATLLLLASAVLLVVLADPLLDYATAAGAQLHDLGPYRAILEEGAP"
     gene            complement(1608..1943)
                     /locus_tag="VLF16_03710"
     CDS             complement(1608..1943)
                     /locus_tag="VLF16_03710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003152016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit C"
                     /protein_id="HSX70017.1"
                     /translation="MEALFALTLGLLTASGVYLLLRARTFPVVLGLTLLSYAVNLFLF
                     AMGRLSGDVAVLGLSQAPADPLPQALVLTAIVIGFAMTAFVVVLALRGVADLGNDHVD
                     GRADEERAP"
     gene            complement(1943..>3020)
                     /gene="mbhE"
                     /locus_tag="VLF16_03715"
     CDS             complement(1943..>3020)
                     /gene="mbhE"
                     /locus_tag="VLF16_03715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017521058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hydrogen gas-evolving membrane-bound hydrogenase
                     subunit E"
                     /protein_id="HSX70018.1"
                     /translation="LSALGLTIHALAPLTELTGSRGLSPFDPFTALCMALLAASGLFT
                     AVLHRQRMVALLVLGVGGMLVALAFARFSAPDLALTQLVVEVVTIILLMLALYYLPSR
                     TRRESTLLRLARDLLVAGGCGAMVAVLAYAVLTRPYDTGLAEFFLANSVSGGGGTNAV
                     NVILVDFRGFDTFGEITVLAIAAVGVFAMLHGLRLTNPTCDPQGRRWAWAKNPLILMT
                     LSRLLLPLALLISAFIFLRGHNLPGGGFIAGLITAVALALQYIANGLEWMDQRLRLNY
                     QRIAGFGVLIAGLTGLGSWAFGRPFLTSAFGHFELPLVGEFELATAMLFDLGVYLTVV
                     GATLLVLVNLGRLSLAPPASEEIH"
BASE COUNT          611 a         1023 c         1074 g          312 t
ORIGIN      
        1 ccagcgggct gatcaccgcc agcacgccgc ccaacagcca ctggccgaag gcgatggagt
       61 cgaccagcag cagccaggtc agcagcagca gaatgctctg tgccgggtga ggcagaagtc
      121 ggctcatggc gcgccctcct cgaggatcgc ccggtagggt ccgagatcat gcagctgggc
      181 cccggcggcg gtggcgtagt ccagcagcgg gtcggccagc accaccagca gcaccgcgct
      241 ggccagcaac aagagggtcg caccgaggcg gccgatgtcc agctcggcgc tgtccaggct
      301 tctcaggccg actcgccaga acagcgtgct gccggcacgg ctgaaggcga tcagcgtggc
      361 gaagccggcg agcagcagca ccgtccacag cgccacggac ggcaccgcct tgagcagcaa
      421 cagcttgccg aggaagccgg acagcggcgg caagcccacc acggcaacgg cgccgaagaa
      481 gaacagcgcg ccgagcaggg ccggatgctc cagcgccgcg cccggcacca gcgccgaacc
      541 cttgctgccg cgctggcggg cgatgaggtc ggcgagcagg aacagcccac cggccaccca
      601 ggtgctgtgc agcaggtaat agagcgcggc ggcgtgggcc tctggcgagc cggcggcgac
      661 agcggccagc agcgtgccgg cggacaccag caccaggtag gcgatcagca gacgcaggtc
      721 ctgtgcggcc agcgcaccga gggcgccgag tgccacggtg gccagcgcca gcggccagag
      781 ccaggcctgg gccaggttgg ccaactcgcc ggcgccgtca ccgaaaacca gggtgcagac
      841 ccgcaggacc gcgtagatgc cgaccttggt catgatggcg aacagcgccg ccaccggcgc
      901 gctggcggcc gcataggccc gcggcagcca gaagtacaac ggcaacagcg ccgccttgag
      961 cgcgaacacc agcagcagga gcagcccggc cgcggccagc agcggcacct ggtcgccgct
     1021 ggcggtggcg acccgcgcgg acaggtccgc catgttcagc gtgccgctga cgccgtagat
     1081 caggcccagg gcgatgagga acagcgccga gccggtcagg ttgaggacca cgtaatgcag
     1141 ccccgccctc acccgctccg caccgctgcc gtgcagcagc agcgcatagg aggcgatcag
     1201 caggatctcg aagaacacga acaggttgaa cagatcgccg gtgaggaacg agccgttgat
     1261 gcccagcaac tggaactgca acagcgagtg gaagcgcgga cccaggcggt cgtcgccgcg
     1321 cagggcatac agcgccacgg cgctgccgag caccgccgcg gccagcagca acagcgcaga
     1381 gagacggtcg agcagcagca cgatgccgaa gggcggacgc cagtcgccga gcgcgtagac
     1441 gtgcagctgg ccatcgtctg cctgcagcag cagaacgacc gccaggggca ccagggccag
     1501 ggtggcgagc agcgacaacg cgcgcttgag ccattcgcgg gacggcaata ccagcagcag
     1561 cgcgccacac atcagtggca gcaggatcgg caggatgagc aggtgattca aggcgcccgc
     1621 tcctcatcgg cacggccgtc gacgtggtcg ttgcccaggt cggccacgcc gcgcagggcc
     1681 aggaccacga cgaaggcggt catggcgaag ccgatgacga tggccgtcag caccagtgcc
     1741 tggggcagcg gatcggccgg agcctggctc aggcccagca ccgccacgtc accactcagg
     1801 cggcccatgg cgaagaggaa cagattgacc gcgtaggaca acaacgtcag gccgagcacc
     1861 accggaaagg tgcgggcgcg cagcagcagg tacacgccgc tggcggtgag caggcccagg
     1921 gtcagggcga acagcgcttc catcagtgaa tctcctcgct cgccggcggc gccaggctga
     1981 gccgtcccag gttgaccagt accagcaggg tggcgccgac caccgtgagg tagacgccca
     2041 ggtcgaagag catcgcggtg gccagttcga attcacccac cagcggcaac tcgaagtggc
     2101 cgaaggcgga cgtcaggaag gggcgaccga aggcccagct gccgagcccg gtcagaccgg
     2161 cgatcagcac gccgaaaccg gcgatgcgct ggtagttcag gcgcaggcgc tggtccatcc
     2221 attccaggcc attggcgatg tactgcaggg cgagcgccac ggcggtgatc aggccggcga
     2281 tgaagccgcc gcccggcagg ttgtgcccgc gcaagaagat gaacgccgag atcagcaggg
     2341 ccagcggcag cagcaggcgc gacagggtca tcaggatcag cgggttcttc gcccaggccc
     2401 agcggcgtcc ctggggatcg caggtgggat tggtcagccg caggccatgg agcatggcga
     2461 aaacgcccac ggcggcgatg gccagcacgg tgatctcgcc gaaggtatcg aagccgcgga
     2521 agtcgaccaa gatgacgttg accgcgttgg tgccgccccc gccgctgacg ctgttggcca
     2581 ggaagaattc ggcaaggccc gtgtcgtaag gccgcgtcag caccgcgtag gccagcaccg
     2641 cgaccatcgc accgcagccg ccggcgacca gcagatcgcg cgccaggcgc agcagggtgc
     2701 tctcgcgccg tgtgcgcgac ggcaggtaat agagcgccag catcagcagg atgatagtca
     2761 caacctccac caccagctgg gtcagtgcca gatccggcgc ggagaaacgg gcgaacgcca
     2821 gcgccaccag catgccgccg acgccgagca ccaacagcgc caccatgcgc tggcgatgca
     2881 gcacggcggt gaacaggccg ctcgccgcca gtagcgccat gcacagtgcg gtgaacggat
     2941 cgaaggggct cagcccgcgg gagccggtca gctcggtcag cggcgccagg gcatggatcg
     3001 tcaggcccag ggcactgagc
//
LOCUS       DATIHC010000235         2660 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5483, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000235 DATIHC010000000
VERSION     DATIHC010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2660)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2660)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2660
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5483"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            94..831
                     /locus_tag="VLF16_03720"
     CDS             94..831
                     /locus_tag="VLF16_03720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015476964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HSX70019.1"
                     /translation="MSASYALGAFILLAYTLEAVTGFGSIVIALSLGALLLPIEQLLP
                     VLVPLNIGMTGYLVWRHRAQIDRRLLLGTILPGMVAGTALGYLLLPYLDAALLKRGFG
                     VLILWFAGRELWRLRNATALPVRPQWLTPLLTLGAGLSHGLFASGGPLLVYGLAGTTL
                     DKARFRATLVTVWFTLNSLLTAAFLVDGRLQPALPQVLAYAPLLLVGLWLGERLHRRF
                     DERHFRIAIYALLLVTGTLLLAPWSLV"
     gene            828..2618
                     /locus_tag="VLF16_03725"
     CDS             828..2618
                     /locus_tag="VLF16_03725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010488770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acyl-D-glutamate amidohydrolase"
                     /protein_id="HSX70020.1"
                     /translation="MSYDIIIKNGLYFDGSGAPGALRHVGIKVGKVDAVSLSPLDESG
                     CSEVLDAAGKWVTPGFLEIHSHYDAEVIAAPALKESVRHGVTSVTIGSCSISMVLADA
                     EDCSDLFTRVEAVPREYVLPILQEKKTWRDAAGYRAFYDQLALGPNVSSFLGHSELRV
                     AVMGLERATRDVVPTEAELQRMEQLLEEALDAGCIGLSVMTTRLDKMDGDRAWSSPLP
                     STFASWKEFSRLFAILRRRGAVMQGAPNAVTKVNVFAFLWQAHGWFRTPLKCSMLTAL
                     DLKSQPLLHRFTRFSGWLANRVLRGNFRWQTLPAPFTLRLEGLNVNAFEEFGAGEILR
                     NIKDPDELYAKVLEPEFRALFKKQVKAVLTKGLWHRDFSDCWVTECPDATMVGKNFKQ
                     LGQARGLDAVDAYFELACQYREALKWTTCYGNQRLPVMHKLLSSPWTQPGFADSGAHL
                     RSIAQYNFPLRFLKYVRDAQIAGTPFMELGQAVRRCSGELADFIGVDAGYIRVGDRAD
                     LVIVNPEGLTDELDNMSEAPMEVLGQVRVVKRNDAAVDATLINGRIAYRRGLEYPAEL
                     GQVQGYGRFLQGRDVLPRHATAAGLQPATA"
BASE COUNT          399 a          959 c          859 g          443 t
ORIGIN      
        1 cggcctgtac taccggcaga tgagccaccg cttcgccggc gagctgccgc cacccggcag
       61 ccgcccagtg gcgctacaag gcgagccgca gccgtgagcg cttcctatgc cttgggcgcc
      121 ttcatcctgc tggcctacac cctggaggcc gtcaccggtt tcggcagcat cgtcatcgcc
      181 ctgtcgctgg gcgcgctgct gctgcccatc gagcagctac tgccggtgct ggtgccattg
      241 aacatcggca tgaccggcta cctggtgtgg cgccaccgcg cgcagatcga ccgccgcctg
      301 ctgctcggca ccatcctgcc gggcatggtc gccggcaccg cgctgggcta cctgctgctg
      361 ccgtatctgg acgcggcgct gctcaagcgc ggcttcggcg tgctgatcct gtggttcgcc
      421 gggcgcgaac tgtggcgcct gcgcaacgcc accgcgttgc cggtacgccc gcagtggcta
      481 acccccctgc tcaccctcgg cgccggcctc agccacggcc tgttcgcctc cggcgggccg
      541 ctgctggtct acggcctggc tggcaccacg ctggacaagg cgcgctttcg cgccaccctg
      601 gtgacggtct ggttcacctt gaacagcctg ctgaccgccg ccttcctggt cgacggccgc
      661 ctgcaaccag ccctgcccca ggtgctggcc tacgccccgc tgctgctggt cggcctgtgg
      721 ctgggcgaac gcctgcatcg gcgcttcgac gagcgccact tccgcatcgc catctacgcc
      781 ctgctgctgg tcaccggcac gctgctgctc gccccctgga gcctcgtatg agctacgaca
      841 tcatcatcaa gaatggcctg tacttcgacg gcagcggcgc acctggcgcg ctgcgccatg
      901 tcggcatcaa ggtcggcaag gtcgacgcgg tcagcctcag cccgctggac gaaagcggct
      961 gcagcgaggt gctggacgcc gccggcaagt gggtcacccc gggttttctg gaaatccact
     1021 cgcactacga tgccgaggtg atcgccgcac cggcgctgaa ggagtcggtg cgccacggcg
     1081 tgaccagcgt gaccatcggc tcctgctcga tcagcatggt gctggccgac gccgaggact
     1141 gctcggacct gttcacccgc gtcgaggccg tgccgcgcga gtacgtgctg ccgatcctgc
     1201 aggaaaagaa gacctggcgc gacgccgccg gctaccgtgc tttctacgac cagttggcgc
     1261 tgggccccaa cgtcagctcc ttcctcggcc actccgagct gcgcgtggcg gtgatgggcc
     1321 tggagcgagc cacccgcgac gtggtgccga ccgaggccga actgcaacgc atggaacaac
     1381 tgctggagga agcgctggat gccggctgca tcggcctttc ggtgatgacc acgcgcctgg
     1441 acaagatgga cggcgaccgc gcctggtcca gcccgctgcc ctcgactttc gccagctgga
     1501 aggagttctc gcgcctgttc gccatcctgc gtcggcgtgg tgcggtgatg cagggcgcgc
     1561 ccaacgcggt gaccaaggtc aacgtgttcg ccttcctctg gcaggcccac ggctggttcc
     1621 gcaccccgct caagtgctcg atgctcaccg ccctggacct caagtcgcag ccgctgctgc
     1681 accgtttcac ccgcttctcc ggctggctgg ccaaccgcgt gctgcgcggc aacttccgct
     1741 ggcagacgct gccggcgccg ttcacgctgc gcctggaagg cctcaacgtg aacgccttcg
     1801 aggagttcgg cgcaggcgag atcctgcgca acatcaagga cccggacgag ctgtacgcca
     1861 aggtgctgga gccggagttc cgcgccctgt tcaagaaaca ggtcaaggcc gtgctgacca
     1921 agggcctgtg gcaccgcgac ttctccgact gctgggtgac cgagtgcccg gacgcgacaa
     1981 tggtcggcaa gaacttcaag caactcggcc aggcccgtgg cctggacgcg gtggacgcct
     2041 acttcgagct ggcctgccag taccgcgagg cgctgaagtg gaccacctgc tacggcaacc
     2101 agcgcctgcc ggtgatgcac aagctgctgt ccagcccctg gacccagccg ggcttcgccg
     2161 actccggcgc gcacctgcgc tccatcgccc agtacaactt cccgctgcgc ttcctcaagt
     2221 acgtgcgtga cgcccagatc gccggcaccc cgttcatgga actgggtcag gcggtgcgcc
     2281 gctgcagtgg cgagctggcc gacttcatcg gcgtcgacgc cggctatatc cgcgtcggcg
     2341 accgcgccga cctggtcatc gtcaatcccg aagggctcac cgacgagctc gacaacatga
     2401 gcgaggcgcc catggaggtg ctcggccagg tgcgggtggt caaacgcaac gacgctgcgg
     2461 tggatgccac cttgatcaac ggccgcatcg cctatcggcg cggcctggaa tacccggccg
     2521 agctgggcca ggtccagggc tacgggcgct tcctgcaagg ccgcgatgta ctgccgcgtc
     2581 atgcaacagc tgcggggctg cagccggcca ccgcctgaag gagcccggat gcaatccggg
     2641 aacggagctg cctgtttccc
//
LOCUS       DATIHC010000236         2165 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12272, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000236 DATIHC010000000
VERSION     DATIHC010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2165)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2165)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2165
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12272"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..630
                     /locus_tag="VLF16_03730"
     CDS             <1..630
                     /locus_tag="VLF16_03730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014820153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YetF domain-containing protein"
                     /protein_id="HSX70021.1"
                     /translation="VVVRALFAYLVVFLFLKVSGRRGVRQLSLFELVVILTLGSAAGD
                     VSFYEDVPLLPIVVVFATLLLLYNLTTRMMKRSARFADWVEGKPVVIIRDGLYELGTL
                     EAQNITSDEFHMELRRAGVEHLGQVRLGILEVDGDLSLYFFPPEATHSGLSVLPAELR
                     PVYRQIPEDGLYACNRCGNPQPLAASSTPTCARCGGNLWSRALDWKREP"
     gene            627..1718
                     /locus_tag="VLF16_03735"
     CDS             627..1718
                     /locus_tag="VLF16_03735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019365779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IB"
                     /protein_id="HSX70022.1"
                     /translation="MSEQAPPLASGDRPLPDDERGDTGTALCPVLPPDLRYVDDRQPG
                     ITRRKLRGRFAYFDADGQRIRDEEEIRRINALAIPPAYTDVWICADPQGHLQAVGRDA
                     RGRKQYRYHPRWREVRDSDKYGRMLDFGHALPRLRRQVEEHLALRDLCRDKVMATVVS
                     LLDSTLIRVGNPQYARDNKSFGLTTLRNRHVEVSGAAIRFHFRGKGGIEHRVSLSHPR
                     LARAVRRCMELPGQQLFQYLDDEGQRHDVSSADVNAYLQQHSGGEFSAKDYRTWAGSA
                     LALRFLRELTPGSATEAKSQVVEVTRQVSRLLGNTPAICRKCYIHPAVIDAFLEGRLA
                     ALRPARARSGLRDEESLLLRFLEGLAKPD"
     gene            1787..>2165
                     /locus_tag="VLF16_03740"
     CDS             1787..>2165
                     /locus_tag="VLF16_03740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003113607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HSX70023.1"
                     /translation="MESPMKTIASLIYPDVMSLDVTGPLQVFASANVELRRQGQADAY
                     RLLVLADEAGPLATSAGFQIVADRAWRDCPADQLDTLLIPGGQGETAQCANPPLLAWL
                     RAAEPRIRRLGSVCSGALILAAAG"
BASE COUNT          327 a          789 c          706 g          343 t
ORIGIN      
        1 gtggtggtgc gcgcgctgtt cgcctacctg gtggtgtttc tcttcctgaa ggtctcgggg
       61 cgccgcggtg tacgccagct gtcgctgttc gagctggtgg tgatcctcac cctcggctcg
      121 gccgccggcg acgtgtcgtt ctacgaagac gtgccgctgc tgccgatcgt cgtggtcttc
      181 gccaccctgc tcctgctcta caacctcacc acacgcatga tgaagcgcag cgcccgcttc
      241 gccgactggg tcgaaggcaa gccggtggtg atcatccgcg acggcctcta cgaactgggc
      301 acgctggagg cgcagaacat caccagcgac gaattccaca tggagctgcg tcgcgccggc
      361 gtcgagcacc tgggccaggt gcgcctgggc atcctcgaag tggacggcga cctcagcctg
      421 tacttcttcc cgccggaggc cacccacagc ggcctgtcgg tgctgccggc ggaactccgc
      481 ccggtctacc ggcagatccc cgaggacggc ctgtacgctt gcaaccgttg cggcaatccc
      541 cagccgctgg cggcgagcag tacaccaacc tgcgcccgct gcggcggcaa cctctggagc
      601 agggcgctgg actggaagcg cgaaccatga gcgaacaggc acccccactg gccagcggcg
      661 accgcccgct accggacgac gaacgtggcg acaccggcac cgcgctgtgc ccggtgctgc
      721 cgcccgacct gcgctatgtc gacgaccgcc agccgggcat cacccggcgc aagctgcgcg
      781 gccgtttcgc ctacttcgac gccgatggcc agcgcatccg cgacgaagag gaaatccgcc
      841 gcatcaacgc cctggcgatt ccgccggcct acaccgacgt gtggatctgc gccgacccgc
      901 agggccatct gcaggcggtc ggccgcgacg cccgcgggcg caagcagtac cgctaccacc
      961 cgcgctggcg cgaggtgcgt gacagtgata agtacgggcg catgctcgac ttcggccatg
     1021 ccttgccgcg cctgcgccgg caggtcgagg agcacctggc tctgcgcgat ctgtgtcgcg
     1081 acaaggtcat ggccacggtg gtgtccctgc tcgactcgac gctgatccgc gtcggcaacc
     1141 cgcagtacgc ccgcgacaac aagtcgttcg gcctcaccac tctgcgcaat cgccacgtcg
     1201 aggtcagcgg cgccgccatc cgctttcact tccgcggcaa gggcggcatc gagcaccgcg
     1261 tcagcctcag tcacccgcgt ctggcgcgcg cggtgcggcg ctgcatggag ttgcccgggc
     1321 agcagctgtt ccagtacctg gacgacgagg gccagcgcca cgacgtcagc tcggcggacg
     1381 tcaacgccta cctgcagcag cacagcggcg gcgagttcag tgccaaggac taccgcacct
     1441 gggccggcag cgcgctggcc ctgcgttttc tgcgcgaact gacgccgggc agcgccaccg
     1501 aggccaagag ccaggtcgtc gaggtcaccc gccaggtctc gcggctgctg ggcaacacgc
     1561 cggcgatctg tcgcaagtgc tacatccatc cggcggtgat cgacgccttc ctcgagggac
     1621 gcctggccgc gctgcgtccg gcacgtgcgc gcagcggcct gcgcgacgaa gaaagtctgc
     1681 tgctgcgctt tctcgaaggg ctggcgaagc ccgactagct tggccatatc cgtggggtga
     1741 ttgtccttgt tgccagatcg accagggccc agactctctc cagcttctgg agagccccat
     1801 gaaaaccatc gccagcctga tctacccgga cgtgatgagc ctggacgtca ccggcccgct
     1861 gcaggtgttc gcctcggcca atgtcgagtt gcgtcgccag ggccaggccg acgcctatcg
     1921 cctcctggtg ctggctgacg aggccggccc gctggccacg tccgcgggct tccagatcgt
     1981 cgccgaccgc gcctggcgtg attgccccgc cgaccagctc gacactctgc tcatacccgg
     2041 cggccagggc gagacggcgc agtgcgccaa cccaccgtta ctggcctggc tgcgtgcggc
     2101 agagccgcgc attcgccggc tcggctcggt gtgctccggc gcgttgatcc tggccgccgc
     2161 cggcc
//
LOCUS       DATIHC010000237         1687 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2999, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000237 DATIHC010000000
VERSION     DATIHC010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1687
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2999"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(55..900)
                     /gene="metF"
                     /locus_tag="VLF16_03745"
     CDS             complement(55..900)
                     /gene="metF"
                     /locus_tag="VLF16_03745"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018605035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HSX70024.1"
                     /translation="MSQERRYSFEFFPTKTEAGHEKLMNVARQLAGYNPDFFSCTYGA
                     GGSTRDRTLNTVLQLDGDVGVPTAPHLSCVGDSKDELRSLLSQYKNSGIKRIVALRGD
                     LPSGMGMASGELRYANELVEFIRGETGDHFHIEVAAYPEVHPQARSYEDDLKNFVRKC
                     QAGANSAITQYFFSADCYFYFVERVRKLGVELPIVPGIMPITNYSKLARFSDACGAEI
                     PRWIRKQLEAYGDDLESIQAFGEQVVTQMCERLLDGGAPGLHFYTLNQAEPSLAIWNN
                     LKLPR"
     gene            complement(960..>1687)
                     /locus_tag="VLF16_03750"
     CDS             complement(960..>1687)
                     /locus_tag="VLF16_03750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011266417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HSX70025.1"
                     /translation="YGDVGKGSAQSLRQEGMIVKVSEVDPICAMQACMDGFELVSPYK
                     NGLNDGTEASVDAALLGKIDLIVTTTGNVNVCDAGMLKALKKRAVVCNIGHFDNEIDT
                     AFMRKNWAWEEVKPQVHKIHRTGAGSFDPANDDYLILLAEGRLVNLGNATGHPSRIMD
                     GSFANQVLAQIFLFEQKYADLSAEKKAERLTVEVLPKKLDEEVALEMVKGFGGVVTQL
                     TKQQADYIGVTVEGPFKPDTYRY"
BASE COUNT          253 a          517 c          579 g          338 t
ORIGIN      
        1 gtctggtatg agatcacgcc gccgccgcga agttgctccg gcggcgcgct cgcctcagcg
       61 tggcagcttg aggttgttcc agatggccag gctcggttcg gcctggttga gggtgtagaa
      121 gtgcaggccc ggggcgccgc cgtcaagcag gcgctcgcac atctgggtca ccacctgctc
      181 gccgaaggcc tggatgctct ccaggtcgtc gccgtaggct tccagctgct tgcggatcca
      241 gcgcgggatc tcggcgccgc aggcgtcgga gaagcgcgcc agcttgctgt agttggtgat
      301 cggcatgata cccggcacga tcggcaactc cacgcccagc ttgcgcacgc gctcgacgaa
      361 gtagaagtag cagtcggcgc tgaagaagta ctgggtgatg gcgctgttgg caccggcctg
      421 gcacttgcgc acgaagttct tcaggtcgtc ctcgtagctg cgcgcctgcg ggtgcacttc
      481 cgggtaggcc gccacttcga tgtggaagtg gtcgccggtc tcgccgcgga tgaactccac
      541 cagctcgttg gcgtagcgca gctcgccgct ggccatgccc atgccggatg gcaggtcgcc
      601 gcgcagggcg acgatgcgct tgatgccgga gttcttgtac tggctgagca ggctgcgcag
      661 ctcgtccttg ctgtcgccga cgcaggacag gtgcggcgcg gtcggcacgc cgacgtcgcc
      721 atcgagctgc agcacggtgt tgagggtgcg gtcgcgggtg gaaccaccgg caccgtaggt
      781 gcaggagaag aaatcggggt tgtagccggc cagctggcgg gccacgttca tcagtttttc
      841 atgcccggct tcggtcttgg tggggaagaa ctcgaagctg tagcgacgtt cttgtgacat
      901 ggatctgttc cttgcagaca cgaagagggc gggacgtcgc cgtcccgccc tccggtgcat
      961 cagtagcggt aggtgtccgg cttgaacgga ccctcgacgg tcacgccgat gtagtcggcc
     1021 tgctgcttgg tcagctgggt gaccacgccg ccgaagccct tgaccatctc cagcgccacc
     1081 tcctcgtcca gtttcttcgg cagcacttcg acggtcaggc gttcggcctt cttctcggcg
     1141 gagaggtcgg cgtacttctg ctcgaacagg aagatctgcg ccagcacctg gttggcgaag
     1201 gagccgtcca tgatgcggct cgggtggccg gtggcgttgc ccaggttcac cagacggcct
     1261 tcggccagca ggatcaggta gtcgtcgttg gccggatcga agctgccggc gccggtgcgg
     1321 tggatcttgt gcacctgcgg cttgacctct tcccaggccc agttcttgcg catgaaggcg
     1381 gtgtcgatct cgttgtcgaa gtgaccgatg ttgcagacca cggcgcgctt cttcagcgct
     1441 ttcagcatgc cggcgtcgca gacgttgacg ttaccggtgg tggtgacgat caggtcgatc
     1501 ttgcccagca gcgcggcgtc gacgctggct tcggtgccgt cgttgaggcc gttcttgtac
     1561 ggggaaacca gctcgaagcc gtccatgcag gcctgcatgg cgcagatcgg gtcgacttcg
     1621 gacaccttga cgatcatgcc ttcctggcgc agggactggg ccgaaccctt gcccacgtca
     1681 ccgtagc
//
LOCUS       DATIHC010000238         4333 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19338, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000238 DATIHC010000000
VERSION     DATIHC010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4333)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4333
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19338"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..124)
                     /locus_tag="VLF16_03755"
     CDS             complement(<1..124)
                     /locus_tag="VLF16_03755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system contractile sheath
                     small subunit"
                     /protein_id="HSX70026.1"
                     /translation="MAKEGSVAPKERINVTFKPATGGAQEEIELPLKLMVLGDFT"
     gene            complement(171..1733)
                     /gene="tssA"
                     /locus_tag="VLF16_03760"
     CDS             complement(171..1733)
                     /gene="tssA"
                     /locus_tag="VLF16_03760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010565818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system protein TssA"
                     /protein_id="HSX70027.1"
                     /translation="MTALSPLAEHYLHLAKAPINEGDFAGADMRYSGEFEALEGELEK
                     AAAMHQTEAIDWQKIRDLSEALLRHHSKDLRAACWMTWALYQREGLAGLQAGLGLLRH
                     LCDERWSELHPRKDRTRAAALAWLTPRLEKALGEDIPVASQLPLFRTLAELLRSLETC
                     LSQHLGEEAPLLLPLCRRLDEQIARASQGQSEPGVVGAALAQVKQAAAQVINPTAPLD
                     NERDAHKSLRALQDGARPLCAWWLKQKASDLRALRLSRTLLWLPIDGLPQANAEQITT
                     LRGLPADKLANFAERFAAGQYADLLVELEASIARAPFWLDGQRLAWECLQELNAEPAM
                     CEVEIQLALFLQRVPGLEELRFHDGAPFADAETRAWIGAHVMPHLQAPSAEPAVQVGE
                     GGELPAWEVALQAALPRLRKDGLKPAVQQLKQGMAQAQGGRARFFWQLALARLCSAAK
                     KHELAKTQLESLDQTLQASGLGEWEPDLALEVLRLLHNCYELLPQNHAIRERKEEIHR
                     RLCHLDLEVVLD"
     gene            2360..3313
                     /locus_tag="VLF16_03765"
     CDS             2360..3313
                     /locus_tag="VLF16_03765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017676220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAXI family TRAP transporter solute-binding
                     subunit"
                     /protein_id="HSX70028.1"
                     /translation="MTLTQRLSLLLAASALAVSTAALAAPTFINVLTGGTSGVYYPIG
                     VALSQLYGSGIEGSKTSVQATKASVENLNLLQAGRGELAFALGDSVSDAWNGVEEAGF
                     KAPLKKLRAIAGTYPNYIQIVASAESGIKTLADLKGKRISVGAPKSGTELNARAIFKA
                     AGLTYEDMGEVQFLPYAESVELIKNRQLDATLQSSGLGMAAIRDLASTMPISFVAIPG
                     EVASKIGNAAYQPASIPANTYDGQTEAVPTVAITNLLVSHDKVSDEVAYQMTKLMFDN
                     LGKLANAHSAAKDIKLEGAAKNLPIPLHPGAERYYKEVGAL"
     gene            3411..>4333
                     /locus_tag="VLF16_03770"
     CDS             3411..>4333
                     /locus_tag="VLF16_03770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter fused permease subunit"
                     /protein_id="HSX70029.1"
                     /translation="MSDHPDGLLASPRDWPRTLFVVALLFTAFQIVTAAFHPVSTQVL
                     RAVHAGFLLLVIFLSYPGFGSGRPFQPLAWLLGLAGMATAIYQWVFEADLIQRSGDLT
                     SADMLMGLLLIVLVFEAARRVMGIALPIICGLFLLYGLFGEYLPGDLAHRGYGFDQVV
                     NQLSFGTEGLYGTPTYVSATYIFLFILFGAFLEQAGMIKLFTDFAMGFFGHKLGGPAK
                     VSVVSSALMGTITGSGVANVVTTGQFTIPLMKRFGFSSAFAGGVEATSSMGGQIMPPV
                     MGAVAFIMAETIDVPYVEIFKAAIIPAILYYA"
BASE COUNT          690 a         1385 c         1431 g          827 t
ORIGIN      
        1 gggtgaaatc acccagaacc atcaacttga ggggcagttc gatctcttcc tgagcaccac
       61 cggtcgccgg tttgaaggtg acgttgatgc gttccttggg ggctaccgag ccttctttgg
      121 ccattgggtg tatctccttt acggtcgggt tcgttgcggg ccttgcggcc tcaatccagc
      181 accacttcga ggtcgaggtg gcacagcctg cggtggatct cttccttgcg ctcgcggatc
      241 gcgtggttct gcggcagcag ctcgtagcag ttgtgcagca gacgcagcac ttccagggcg
      301 agatcgggtt cccactcgcc gaggccggag gcctgcagcg tctggtcgag ggattcgagt
      361 tgggtcttgg ccagttcgtg ttttttcgcc gcgctgcaca ggcgcgccag ggcgagctgc
      421 cagaagaagc gcgcgcggcc gccctgggcc tgtgccatgc cctgcttgag ttgctgcacg
      481 gcgggcttca ggccgtcctt gcgcaggcgc ggcagtgcgg cctgcagggc gacttcccag
      541 gccggcagct cgccgccttc gccgacctgc accgccggct cggcgctcgg cgcctgcagg
      601 tgcggcatga cgtgggcgcc gatccaggcg cgggtctctg cgtcggcgaa gggcgcgccg
      661 tcatgaaagc gcagctcctc gaggccgggc acgcgctgca ggaacagggc gagctggatt
      721 tccacctcgc acatggccgg ctcggcgttc agttcttgca ggcattccca ggccaggcgc
      781 tggccgtcca gccagaaggg cgcgcgggcg atgctggctt ccagttccac cagcaggtcg
      841 gcgtactggc cggcggcgaa gcgttcggcg aagttggcca gcttgtccgc cggcaggccg
      901 cgcagggtgg tgatctgttc ggcgttggcc tgcggcaggc catcgatcgg cagccacagc
      961 aaggtgcggg acaggcgcag ggcacgcagg tcgctggcct tctgcttcag ccaccaggcg
     1021 cacagcggcc gggcaccgtc ctgcagggcg cgcagcgact tgtgcgcgtc gcgctcgttg
     1081 tccagcgggg cggtggggtt gatcacctgg gcggcggcct gcttgacctg ggccagcgca
     1141 gcgccgacca cgccgggttc gctctggccc tggctggcgc gggcgatctg ctcgtccagg
     1201 cggcggcaca gcggcagcag cagcggcgct tcctcgccca ggtgctgcga caggcaggtt
     1261 tccaggctgc gcagcagctc ggccaacgtg cggaacagcg gcaactggct ggccaccgga
     1321 atgtcctcgc ccagggcctt ctccaggcgc ggggtgagcc aggccagggc ggcggctcgg
     1381 gtacggtcct tgcgggggtg cagctcgctc cagcgttcgt cgcacaggtg gcggagcagg
     1441 ccgaggccgg cctgcaagcc ggcaagacct tcgcgctggt acagcgccca ggtcatccag
     1501 caggcggcgc gcaggtcctt ggagtggtga cgcagcagcg cctcgctcag gtcgcggatc
     1561 ttctgccagt cgatggcctc ggtctggtgc atcgcggcgg ccttttccag ctcgccttcg
     1621 agggcctcga attcgccgga ataacgcata tcggcaccgg caaagtcgcc ctcgttaatg
     1681 ggggcttttg ccaaatgcag ataatgttcg gcgagtggag ataatgcagt cattccattg
     1741 actctattgg gcgctcagca acttaagcgg ggcttcttat atatataaga agcaagcggt
     1801 tgcttggcgg cggtgtgcaa ctttctgcgc aactctttgc gcaacaactt gcacaagatc
     1861 cttatgcggt gggcatccta gccccgcaat gagaggtggg caaggtaaaa agtgtgacgc
     1921 gcgttgcacg gagaaagatt gctgcgcgtt attgatccgt cattgataca ggtcatttgg
     1981 cgtcaataac tagttgccga tttcaaattg agtaaggtga gcaagttgta acttcgcttg
     2041 taggaaaggg cttactttta aatttgttcc acttcacaaa taagtgcgcg cggcggcgct
     2101 tttatgtgaa ctgggcccgc aaaaaaatct gtccgataga tcagaaagtg accacgtgtt
     2161 cactcagttg gcgcgcagcg gcccggcgca ggtcgcggtt cgatttcagg gtcaggcgtt
     2221 cgaccttggt cgagtgccgt ggcgggaaac gcatccgagg ctgctatggt gtctcgatgg
     2281 cctgccgtgg tgcgggccgc tgcaggactc cttccgccct gagcggatca gatcacagaa
     2341 caatcacgga gaaacccgca tgactctgac ccagcgtctc agcctgcttc ttgccgccag
     2401 tgccctggcg gtcagcaccg ccgctctggc ggcccccacc ttcatcaacg tgctcaccgg
     2461 cggcaccagt ggcgtgtatt accccatcgg ggtcgcgctc tcgcagctct atggttccgg
     2521 catcgaaggc tcgaagacct cggtgcaggc gaccaaggcc tcggtggaaa acctcaatct
     2581 gctgcaggcc ggccgcggcg agctggcctt cgccctcggc gactcggtgt cggacgcctg
     2641 gaacggcgtg gaggaggccg gcttcaaggc gccgctgaag aagctgcgcg ccatcgccgg
     2701 cacctacccg aactacatcc agatcgtcgc cagcgccgaa tcgggcatca agaccctggc
     2761 cgacctcaag ggcaagcgca tctccgtcgg cgcgcccaag tccggtaccg agctgaacgc
     2821 gcgggccatc ttcaaggccg ccgggctgac ctacgaggac atgggcgagg tgcagttcct
     2881 gccctacgcc gagtcggtcg agctgatcaa gaatcgccag ctcgacgcca ccctgcagtc
     2941 gtccggcctg ggcatggcgg cgatccgtga cctggcctcg accatgccga tcagcttcgt
     3001 cgccatcccc ggcgaggtgg cgagcaagat cggcaatgcg gcctaccagc cggccagcat
     3061 ccccgccaac acctacgacg ggcagaccga ggcggtgccg accgtggcca tcaccaatct
     3121 gctggtgagc cacgacaagg tgtccgacga ggtggcctac cagatgacca agctgatgtt
     3181 cgacaacctc ggcaagctgg cgaacgccca ctccgccgcc aaggacatca agctggaggg
     3241 cgccgcgaag aacctgccca tcccgctgca ccccggcgcg gagcgctact acaaggaagt
     3301 cggcgccctc tgagggtgac ctggccgcgg gcagacgccc acggccgctg ttcgatccga
     3361 ccgtggccga gtcgcctgcg accttcggcc tttgccgtta ggagacattc gtgagcgatc
     3421 atccagacgg gctgctggcg agcccgcgcg actggcccag aaccctgttc gtcgtggccc
     3481 tgctgttcac cgcttttcag atcgtcactg ccgccttcca cccggtctcg acccaggtgc
     3541 tgcgggcggt ccacgccggc tttctgctgc tggtgatctt cctcagttac cccggcttcg
     3601 gcagcggcag gccgtttcag ccgctggcct ggttgctggg cctggcgggc atggcgacgg
     3661 cgatctacca gtgggtgttc gaggcggacc tgatccagcg ctccggcgac ctgacgtctg
     3721 ccgacatgct gatgggcctg ttgctgatcg tcctggtgtt cgaggcggcg cgccgggtga
     3781 tgggtatcgc cctgccgatc atctgcgggc tgttcctgct gtatggcctg ttcggtgaat
     3841 acctgccggg ggatctggcg caccgcggct atggcttcga tcaggtggtc aaccagctgt
     3901 cgttcggcac cgaggggcta tacggcacgc cgacctatgt gtcggccacc tacatcttcc
     3961 tgttcatcct gttcggcgcg tttctcgagc aggcggggat gatcaagttg ttcaccgact
     4021 tcgccatggg cttcttcggc cacaagctgg gcggcccggc caaagtgtcg gtggtgtcct
     4081 cggcgctgat gggcaccatc accggctcgg gcgtggccaa cgtggtcacc accggccagt
     4141 tcaccatccc gctgatgaag cgcttcggct tctcgtccgc cttcgccggt ggcgtggagg
     4201 ccacgtcctc gatgggcggc cagatcatgc cgccggtcat gggtgccgtg gccttcatca
     4261 tggccgagac catcgacgtt ccgtatgttg aaatcttcaa ggcggcgatc attccggcca
     4321 ttctctatta tgc
//
LOCUS       DATIHC010000239         1938 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28701, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000239 DATIHC010000000
VERSION     DATIHC010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1938)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1938)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1938
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28701"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..588
                     /locus_tag="VLF16_03775"
     CDS             <1..588
                     /locus_tag="VLF16_03775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007945798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HSX70030.1"
                     /translation="EPLTALSGALKTLAVALMKIANDLRLLGSGPRAGFAEVKLPANE
                     PGSSIMPGKVNPTQCEALSMLACQVLGNDATVAFAASQGHLQLNVFKPVIIHNLLQSI
                     RLLADGSRNFAQHCVAGMEPDARQMAAHLERGLMLVTALNPHIGYDKAAEIAKKAYAE
                     GLSLREAALQLGHLSNEQFDAWVRPENMLESGQHG"
     gene            581..1201
                     /locus_tag="VLF16_03780"
     CDS             581..1201
                     /locus_tag="VLF16_03780"
                     /EC_number="1.-.-.-"
                     /EC_number="1.6.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003461839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008753 - NADPH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HSX70031.1"
                     /translation="MVDEAKSGATPLEGDGKRILLILGTSKHDSLCHALAEAYSNGAR
                     GKGHVVRQIRLGELQFDPILREGYGQNQALEPDLLEAQRQIHWAEHLVFVYPVWWGGV
                     PALLKGFFDRTFLPGFAFKYRNRSQLWDKLLTGRSADLLVTLDTPPWYFRWVYGAPAH
                     RQMVRTILGFCGIKTRRLTEFSPVRPSSEEQRQGWLRKAENLGIRA"
     gene            complement(1213..>1938)
                     /locus_tag="VLF16_03785"
     CDS             complement(1213..>1938)
                     /locus_tag="VLF16_03785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009681695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HSX70032.1"
                     /translation="AISGLTANYVLYLIGLRMLTPGTTQLVIQMAPILFLVASLIVFR
                     ESFSLAQGIGMLILLAGFGLFFNQRLDELLTSLTGYTTGVLVILLAAFVWVFYGLAQK
                     QLLTQWSSPQIMMVIYLACALLLSPWAHPLQVLQLSSLQFWLLLACCLNTLVAYGAFA
                     EALAHWEASRVSATLSVTPLVTFCAVALAALWWPAHVQPEQINLLGYGGALLVVLGSA
                     LTALGPSLLAGWRARRARRVVMP"
BASE COUNT          356 a          671 c          645 g          266 t
ORIGIN      
        1 gagccgctca ccgcgctgtc cggcgcgctg aagaccctgg ccgtggcgct gatgaagatc
       61 gccaacgacc tgcgcctgct cggctccggc ccgcgcgccg gcttcgccga ggtgaagctg
      121 ccggccaacg agccgggcag ctcgatcatg cccggcaagg tcaacccgac ccagtgcgag
      181 gcgttgtcca tgctcgcctg ccaggtgctc ggcaacgatg ccaccgtcgc cttcgccgcg
      241 agccagggcc atctgcagct caacgtgttc aagccggtga tcatccataa cctgctgcag
      301 tcgatccgcc tgctcgccga cggcagccgc aacttcgccc agcactgcgt ggccggcatg
      361 gaaccggacg cccggcagat ggccgcccac cttgagcgcg ggctgatgct ggtgaccgcg
      421 ctgaacccgc atatcggcta cgacaaggcc gcggagatcg ccaagaaggc ctacgccgaa
      481 ggactcagcc tgcgcgaggc ggccctgcag ctcggtcatc tgagcaacga gcagttcgac
      541 gcctgggtgc gcccggaaaa catgctggag tccggacaac atggttgacg aggcgaagag
      601 tggcgccacc ccgctggagg gcgacggcaa gcgcatcctg ctgattctcg gtacgtccaa
      661 gcacgacagc ctgtgccatg ccctcgccga ggcctacagc aacggcgcgc gcggcaaggg
      721 ccacgtggtg cggcagatcc gcctcggcga gctgcagttc gaccccatcc tgcgcgaagg
      781 ctatggccag aaccaggcac tggagccgga cctgctggag gcccagcggc agatccactg
      841 ggcggagcac ctggtgttcg tctatccggt ctggtggggc ggcgtgccgg cgctgctcaa
      901 gggcttcttc gatcgcacct tcctgcccgg cttcgccttc aagtaccgca accgctcaca
      961 gctgtgggac aagctgctga ccgggcgcag cgccgacctg ctggtgaccc tcgacacgcc
     1021 gccctggtat ttccgctggg tctacggcgc gccggcgcac cggcaaatgg tgcgcaccat
     1081 cctcggtttt tgcggcatca agacccgccg cctgaccgag ttttccccgg tgcgcccctc
     1141 ctccgaggaa cagcgccagg gctggctgcg caaggccgag aacctaggca tcagagccta
     1201 ggccgggcgc acctacggca tgaccaccct gcgggcccgg cgtgcccgcc agccggccag
     1261 cagtgagggg ccgagcgcgg tcagcgccga gcccagcacc accagcaaag ccccgccgta
     1321 gccgagcagg ttgatctgct ccggctgcac atgggcgggc caccacagcg cggccagcgc
     1381 cacggcgcag aaggtcacca gaggcgtgac ggacagcgtc gcgctcactc gcgaggcctc
     1441 ccagtgcgcc agcgcctcgg cgaaggcgcc ataggccacc agggtgttca ggcagcaggc
     1501 cagcagcagc cagaactgca acgagctgag ctgcagcacc tgcagcggat gggcccaggg
     1561 cgagagcagc agcgcgcagg cgaggtagat caccatcatg atctgcggcg agctccactg
     1621 ggtcagcaac tgcttctgcg ccaggccgta gaaaacccag acgaaagccg ccaggagaat
     1681 caccagcacg cccgtcgtgt agccggtcag cgaggtcagc agctcgtcca ggcgctggtt
     1741 gaagaacagg ccgaagcccg ccagcaggat cagcatgccg atgccctggg cgaggctgaa
     1801 ggactcgcgg aacacgatga ggctggcgac caggaatagg atcggcgcca tctgaatcac
     1861 cagttgcgtg gtacccggtg tgagcatgcg caggccgatc aggtacagca cgtagttggc
     1921 ggtgaggccg ctgatggc
//
LOCUS       DATIHC010000240         2009 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42686, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000240 DATIHC010000000
VERSION     DATIHC010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2009
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42686"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..214
                     /locus_tag="VLF16_03790"
     CDS             <1..214
                     /locus_tag="VLF16_03790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AIR carboxylase family protein"
                     /protein_id="HSX70033.1"
                     /translation="SGQDSLLSIVQMPAGIPVATLAIGKAGAINAALLAASILGHQHP
                     QFHAKLKQFRDEQTQTVLDNPDPREA"
     gene            232..1314
                     /locus_tag="VLF16_03795"
     CDS             232..1314
                     /locus_tag="VLF16_03795"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011920448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HSX70034.1"
                     /translation="MKIGVIGGGQLGRMMALAGTPLGMDFAFLDPAPDACAQALGEHI
                     RADYGDQDHLRQLADEVDLVTFEFESVPAETVAFLSQFVPVYPSAEALRIARDRWFEK
                     SMFKDLGIPTPEFADIQSQADLDAAVSAIGLPAVMKTRTLGYDGKGQKVLRKAEDVVG
                     AFAELGSVPCILEGFVPFTGEVSLVAVRARDGETRFYPLVHNRHDSGVLALSIASTDH
                     PLQALAEDYVGRVLTKLDYVGVLAFEFFEVDGGLKANEIAPRVHNSGHWTIEGAECSQ
                     FENHLRAVAGLPLGSTAKVGESAMLNFLGAVPDVAKVSAIADCHLHHYGKAFKAGRKV
                     GHATLRCRDMATLKARIAEVEALIKG"
     gene            1398..1643
                     /locus_tag="VLF16_03800"
     CDS             1398..1643
                     /locus_tag="VLF16_03800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HSX70035.1"
                     /translation="MSIIGTIFIGLIVGLVARFLKPGDDSMGWILTILLGIGGSLAAT
                     YGGQALGIYEAGETAGFIGAVVGAILLLIVVGLVRRD"
     gene            1698..>2009
                     /locus_tag="VLF16_03805"
     CDS             1698..>2009
                     /locus_tag="VLF16_03805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015272353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3299 domain-containing protein"
                     /protein_id="HSX70036.1"
                     /translation="MRRLLFALLLLPLLTHAEPAELDWLELMPPEDRQALEAMPEISH
                     DSPEAAGTFGQQGGLKQEQGLPAVMYSKKTVARLDGRQIRLGGYPVPLESDAEGRSTL
                     LF"
BASE COUNT          317 a          710 c          668 g          314 t
ORIGIN      
        1 gtcgggacag gattcgcttc tctccatcgt gcagatgccg gccggcatcc cggtcgccac
       61 cctggccatc ggcaaggccg gcgcgatcaa cgccgccctg ctggccgcca gcatcctcgg
      121 tcaccagcac ccgcagttcc atgccaagct caagcagttc cgcgacgagc agacgcagac
      181 cgtgctggac aatccggacc cccgcgaagc ctgaacaaga gacttcccgc aatgaagatc
      241 ggtgtaatcg gtggcggcca gctgggccgc atgatggccc tggcgggcac cccgctgggc
      301 atggacttcg ccttcctcga cccggcgccg gacgcctgcg cccaggctct gggcgagcac
      361 attcgcgccg attacggcga tcaggaccac ctgcgccagc tggccgacga ggtcgatctg
      421 gtgaccttcg agttcgagag tgtgccggcc gagaccgtgg ccttcctctc gcagttcgtg
      481 ccggtctacc cgagtgccga ggcgctgcgc atcgcccgtg accgctggtt cgagaagtcc
      541 atgttcaagg acctcggcat cccgacgccc gagttcgccg acatccagtc ccaggccgat
      601 ctggacgccg cggtgtccgc catcggcctg ccggcggtga tgaagacccg caccctgggc
      661 tacgacggca agggccagaa ggtcctgcgc aaggcggaag acgtggtcgg cgccttcgcc
      721 gagctgggca gcgtgccctg catcctcgag ggcttcgtgc ccttcaccgg cgaggtctcg
      781 ctggtggccg tgcgcgcccg cgacggcgag acgcgcttct acccgctggt gcacaaccgc
      841 cacgacagcg gcgtgctggc cctgtccatc gccagcaccg accacccgct gcaggcgctg
      901 gccgaggact acgtcggccg cgtgctgacc aagctcgatt acgtcggcgt gctggccttc
      961 gagttcttcg aggtcgacgg cggcctcaag gccaacgaga tcgccccgcg cgtacacaac
     1021 tccgggcact ggaccatcga aggcgccgag tgcagccagt tcgagaacca cctgcgcgcc
     1081 gtggccggcc tgccgctggg ttccaccgcc aaggtgggcg agagcgccat gctcaatttc
     1141 ctcggcgcgg tgccggacgt ggccaaggtc agcgccatcg ccgactgcca cctgcaccac
     1201 tacggcaagg cgttcaaggc cgggcgcaag gtcggccacg ccaccctgcg ctgccgggac
     1261 atggccaccc tgaaggcgcg catcgccgag gtcgaggcgc tgatcaaggg ctgaaccctg
     1321 ccgcttcgtt cgaggtcaca aacaaggcgt gccactggcg cgccttgtgc gtttctgggc
     1381 ttcgaaggag tacgacaatg agcatcatcg gcaccatttt catcggcctg atcgtcggtc
     1441 tggtcgcgcg ctttctcaag cccggcgacg acagcatggg ctggatcctg accatcctgc
     1501 tgggcatcgg cggctccctg gcggcgacct acggcggcca ggccctgggc atttacgagg
     1561 ccggcgagac cgccggattc atcggtgcgg tggtcggcgc cattctcctg ctgatcgtcg
     1621 tcggcctggt ccgccgcgac tgacgtgcgc gcgccgagcc gttaggctag gcgccattca
     1681 ccgccacgag accgaccatg cgccgcctgc tgttcgccct gttgctgctg cccctgctga
     1741 cccacgccga gccggccgag ctggactggc tggagctgat gccgcccgaa gatcgccagg
     1801 ccctggaggc catgccggag atcagccacg acagccccga ggcggccggc accttcggcc
     1861 agcagggcgg gctcaagcag gaacaggggc tgccggcggt gatgtactcg aagaagacgg
     1921 tggcgcgcct ggatggcagg cagattcgcc tgggcggcta tcccgtgccg ctggagagcg
     1981 acgccgaggg caggagcacg ctgctgttc
//
LOCUS       DATIHC010000241         2532 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42699, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000241 DATIHC010000000
VERSION     DATIHC010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2532)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2532)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2532
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42699"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..536
                     /locus_tag="VLF16_03810"
     CDS             <1..536
                     /locus_tag="VLF16_03810"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="hypoxanthine-guanine phosphoribosyltransferase"
                     /protein_id="HSX70037.1"
                     /translation="RQVMAEADCLFTEAQVETAIEQVGAAICAELADRNPVVFCVMNG
                     GLIFAGKLLTKLDFPLELSYLHATRYRSETTGGELFWKAKPEISFIDREVLIIDDILD
                     EGHTLSAIIEFCKHAGASNVHTAVLIDKDHDRKARPDLKADYVGLSCEDRFIFGYGMD
                     YKGYWRNAAGIYAVKGL"
     gene            537..1022
                     /locus_tag="VLF16_03815"
     CDS             537..1022
                     /locus_tag="VLF16_03815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WbuC family cupin fold metalloprotein"
                     /protein_id="HSX70038.1"
                     /translation="MRGPVFLDRALFAALASNAAEAPRRRAHHNLHDMSEPCHRLAVG
                     LQPDTYIPPHRHLCADKAETLLVLQGRIGLLLFDDDGAVQTTRLLEAGGDCLGVDLAP
                     GQFHALVVLAPDSILFECKAGPYRPLVEAEQAAWAPREGEAGVADYLAWMRAQFTDRR
                     V"
     gene            1131..1418
                     /locus_tag="VLF16_03820"
     CDS             1131..1418
                     /locus_tag="VLF16_03820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010795602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PA4642 family protein"
                     /protein_id="HSX70039.1"
                     /translation="MRKDKKQVIGEEISDDSIKLFLEVEPADDTPPSLHKLVKAYRGL
                     RIDDFERFLTFFKQAGYDLDAKDAQGHDFVALIQDQRQAEPYVEAVNAAKA"
     gene            1789..>2532
                     /locus_tag="VLF16_03825"
     CDS             1789..>2532
                     /locus_tag="VLF16_03825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017148585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSX70040.1"
                     /translation="MTQVNHETVDVLLVGAGIMSATLAVLLKELDPGLKLEIAELRSS
                     GAIESSNPWNNAGTGHAGLCELNYTPQAADGSIEIKKAVQINAQFEVSKQFWSHLAGK
                     DGFGSARNFINPVPHMSFVRGDKDIGFLKKRHELLSQHHAFENMEYTEDKAVMAEWMP
                     LMMQGRDGNERIAATRAGNGTDVNFGALTNQLLQFLAAQSGVNVSYSQKVTGLERSGD
                     GWTAQVKNTKSGEQRQIKAKFVFLGAGGGA"
BASE COUNT          466 a          849 c          816 g          401 t
ORIGIN      
        1 tccgccaagt catggccgaa gccgactgcc tgttcaccga agcccaggtc gagaccgcca
       61 tcgagcaggt cggcgccgcc atctgcgccg agctggccga tcgcaacccg gtggtgttct
      121 gcgtgatgaa cggcggcctg atcttcgccg gcaagctgct gaccaagctg gacttcccgc
      181 tggagctgtc ctacctgcac gccacccgct accgcagcga gaccactggc ggcgagctgt
      241 tctggaaggc caagccggag atctccttca tcgaccgcga agtgctgatc atcgacgaca
      301 ttctcgacga gggacacacc ctgtcggcca tcatcgagtt ctgcaagcac gccggcgcca
      361 gcaacgtgca caccgccgtg ctgatcgaca aggaccacga ccgcaaggcc cgcccggacc
      421 tgaaggcgga ctacgtcggc ctgtcctgcg aagaccgctt catcttcggc tacggcatgg
      481 actacaaggg ctactggcgc aacgccgcgg gcatctacgc cgtcaaggga ctgtaagtgc
      541 gcgggccggt cttcctcgac cgcgccctgt tcgccgcact ggcaagcaat gcggccgagg
      601 ccccgcgccg gcgcgcccac cacaacctgc atgacatgag cgagccctgc caccgcctgg
      661 cggtggggct gcagcccgat acctatatcc ctccccatcg ccacctttgc gccgacaagg
      721 ccgagaccct gctggtattg cagggccgca tcggcctgct gctgttcgac gacgacggcg
      781 ccgtgcagac gacccgcctg ctcgaggccg gtggcgactg cctcggcgtg gacctcgcac
      841 ccggccagtt ccatgcgctg gtggtgctgg cgccggacag catcctcttc gagtgcaagg
      901 ccggacccta ccgcccgctg gtcgaggccg aacaggccgc ctgggcgcca cgcgagggcg
      961 aggccggcgt cgccgactac ctggcctgga tgcgcgcgca gttcaccgac cggcgggtct
     1021 agttgcggcc cgcgaggcgt tgcgttctgc tctttagtcg cgttgagcgt cggcctgggc
     1081 gggggtacac tgccggcccc gttgaagtcc gctgcgagct ggagtgcgtg atgcgtaaag
     1141 acaagaaaca ggtgattggc gaagagatca gcgacgactc gatcaagctg ttcctcgagg
     1201 tcgagccggc cgacgacacc ccgccgtccc tgcacaagct ggtcaaggcc taccgcggcc
     1261 tgcgcatcga cgacttcgaa cgcttcctga ccttcttcaa gcaggccggc tacgacctgg
     1321 acgccaagga tgcccagggc cacgacttcg tcgccctgat ccaggaccag cgccaggccg
     1381 agccctatgt cgaggcggtg aacgcggcga aagcctgagg cgtcgtcgga aaagtgaccg
     1441 tccgaccggg ttcgtgcatt ttttgcgact gagtcagcgg cattagtggt attgtgcgcg
     1501 ccgaaaactc cccggctcct gggcctcgga ggcctctgcg agtcgggccg gagcccggtg
     1561 cagagcggtt ccggcagcgc ggcgagtgaa agaattgaac gcacggatcg cccacaggcg
     1621 gcacgtgccg gacgaggttg ctcggtgtct gtcaggccaa ttcatcggcc gcgatgccag
     1681 ccctccgaag ctccagacac ccgtctggct gtcagtgatt agacgccgat gcgcggctca
     1741 aaaggccgat gtcagcggtt tggtactgca gatcttggag aagcgttaat gacgcaagtc
     1801 aatcacgaaa cggtggatgt gctgctggtc ggtgcaggca tcatgagtgc gaccctggcg
     1861 gtgctgctca aggagctgga cccgggcctc aagctggaga tcgccgagct gcgctcctcc
     1921 ggcgcgatcg agagctccaa cccgtggaac aacgcgggta ccggccacgc cggcctctgc
     1981 gagctgaact acacgccgca ggcggcggac ggctcgatcg agatcaagaa ggccgtgcag
     2041 atcaacgccc agttcgaagt ctccaagcag ttctggtcgc acctggccgg caaggacggc
     2101 ttcggttccg cgcgcaactt catcaatccg gtgccgcaca tgagcttcgt gcgtggcgac
     2161 aaggacatcg gcttcctcaa gaagcgtcat gagctgctca gccagcacca tgccttcgag
     2221 aacatggagt acaccgaaga caaggcggtg atggccgagt ggatgccgct gatgatgcag
     2281 ggccgcgatg gcaacgagcg catcgccgcc acccgcgccg gcaatggcac cgacgtcaac
     2341 ttcggcgccc tgaccaacca gctgctgcag ttcctcgccg cccagagcgg tgtcaacgtc
     2401 agctacagcc agaaggtcac cggcctcgag cgcagtggcg acggctggac cgcccaggtg
     2461 aagaacacca agagcggcga gcagcgccag atcaaggcca agttcgtctt cctcggcgcc
     2521 ggcggcggcg cg
//
LOCUS       DATIHC010000242         1750 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21285, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000242 DATIHC010000000
VERSION     DATIHC010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1750
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21285"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..839)
                     /locus_tag="VLF16_03830"
     CDS             complement(<1..839)
                     /locus_tag="VLF16_03830"
                     /inference="COORDINATES: protein motif:HMM:NF012933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyladenine DNA glycosylase 2"
                     /protein_id="HSX70041.1"
                     /translation="MTLIECVLTLPADYRVADLLTFQRRDAQQTGERVSEAGFDKGIV
                     WRDLPACLSVRFSTGIARVTLAVDGEVVPEVEALRGLASRMLGLTQPVEAFEAEHADH
                     PLLGALIAGNRGLRVPQSASPFEALTWAISGQQISLPVAITLRRRLIQLAGQPHSGGL
                     LCYPDAQAVARLDEDTLGRAGFSRAKAQALLLLAREVEAGRLPLETWLADEPAEAIAE
                     RLLALKGIGPWTVDYALLRGFARLDGSLHGDAAVRRQLQQLLGSEEKLGQPFVRDWLL
                     PFAP"
     gene            982..>1750
                     /locus_tag="VLF16_03835"
     CDS             982..>1750
                     /locus_tag="VLF16_03835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014820101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HSX70042.1"
                     /translation="MFNKGLKQEMEELRDELASVRQIKESLYDAMLVLELEPNGRVRF
                     ANQHLLDDMGYRADQLIGQQLETLLPASFRNDPNYPRLLGAMRNREHWSGAFRLQRGD
                     GREAWLRAILQPVNDGGGQLRYFALCANNLTQTIETAKEHEGLIKALLRSTAVIEFNL
                     AGEVVTANDNFLRAMGYRLEDIKGKHHRQFCDPEEYNSQAYRDFWGQLNRGEYVAGRF
                     RRVDAHGRPVWLEASYNPVLDAHDRLYKVVKFATVITD"
BASE COUNT          325 a          616 c          560 g          249 t
ORIGIN      
        1 ggtgcgaagg gcagcagcca gtcgcgcacg aagggttggc cgagcttctc ctccgagccg
       61 agcagctgct gcagctggcg gcgcaccgcg gcatcgccgt gcaacgagcc gtccagccgg
      121 gcgaagccgc gcagcagcgc atagtccacc gtccaggggc caatgccctt gagggccagc
      181 aggcgctcgg cgatggcctc ggccggctcg tccgccaacc aggtctccag cggcaggcgc
      241 cccgcctcga cctcgcgggc aagcaatagc agggcctggg ccttggcccg agaaaagccg
      301 gcgcggccca gggtgtcctc atccagcctc gccaccgcct gcgcatccgg gtagcagagc
      361 agcccgcccg agtgcggctg ccccgccagc tggatcagcc ggcgccgcag ggtgatggcc
      421 accggcaggc tgatctgctg gccgctgatg gcccaggtca gcgcctcgaa cggactcgcc
      481 gactgcggca cgcgcaggcc gcgattgccg gcgatcaggg cgcccagcag cggatgatcg
      541 gcatgttccg cctcgaaggc ctcgaccggc tgggtcagcc cgagcatgcg actcgccagg
      601 ccgcgcagcg cctcgacctc gggtaccact tcgccatcca cggccaacgt cacccgcgcg
      661 atgccggttg agaagcggac actcaggcaa gccggcaagt cccgccagac gatgcccttg
      721 tcgaagcccg cctcgctcac ccgctcgccg gtttgctggg catcccggcg ctgaaaggtc
      781 agcaggtcgg ccacacgata gtccgcgggc agggtcagaa cgcattcgat tagggtcatg
      841 tcgcgcctcg gcaaaacacc gagcttaacg ccgaccggtt gatccgccga gcccggctcg
      901 ccgccgacca ctggcggtca aggattagcc tagactgccg aagcagaggg aacgcacgtc
      961 aaacaacaag tgggtgccac catgttcaac aaaggcttga agcaggaaat ggaagaactg
     1021 cgcgatgaac tcgccagcgt ccgccagatc aaggaatcgc tttacgatgc aatgctggtg
     1081 ctggagctcg agcccaacgg ccgcgtgcgc ttcgccaatc agcacctgct cgacgacatg
     1141 ggctatcgcg ccgatcagct gatcggccag cagctggaga cgctgctgcc ggcatccttc
     1201 cgtaacgatc ccaactatcc gcgcctgctc ggcgccatgc gcaaccgcga gcactggagt
     1261 ggcgccttcc gcctgcagcg cggcgacggc agggaagcct ggctgcgcgc gatcctgcag
     1321 ccggtcaatg atggcggcgg ccagttgcgg tacttcgccc tgtgtgccaa caacctgacc
     1381 cagaccatcg agacggccaa ggagcacgag ggcctgatca aggcgctgct gcgctccacg
     1441 gcggtcatcg aatttaatct cgccggcgag gtagtcaccg ccaacgacaa cttcctgcgc
     1501 gccatgggct accgcctgga ggacatcaag ggcaagcacc atagacaatt ctgcgacccg
     1561 gaggagtaca actcccaggc ctatcgcgat ttctggggtc agctcaaccg cggcgagtat
     1621 gtcgccgggc gcttccgccg cgtcgacgcc cacggtcggc cggtgtggct ggaagcctcc
     1681 tacaacccgg tgctggacgc ccacgaccgc ctgtacaagg tggtcaagtt cgccaccgtg
     1741 atcaccgacc
//
LOCUS       DATIHC010000243         1806 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_3012, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000243 DATIHC010000000
VERSION     DATIHC010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1806
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3012"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(4..1611)
                     /locus_tag="VLF16_03840"
     CDS             complement(4..1611)
                     /locus_tag="VLF16_03840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003102476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSX70043.1"
                     /translation="MNIRQKMIACGAISVVAATLLGGVGFWGQMRLSEVLADSELSVS
                     ALRNHLEGDMMHDALRADVLAAFYAQPGDTAAAEQVRADLREHSQWFQRTMAANAELP
                     LSEEIRSAIGQSQPALNAYIAQAERIVGLALGDPQRARGEMAAFEQSFSELEAKNEAL
                     SELIEQHAAQVRAESQAATRNAAWLLVSGILLVCLLLALLTGHLMKAVLRPLGKTVAV
                     ARAIAQGNLRSIIQVDSNDEAGQLQQSLADMQNNLKQMIETIRRDSEQLQDTAQNLSG
                     ASQSIVHSAHEESDNATSMAAAMEQMIHNIAQIAEHARNAQAISSQSERLASDGGQVI
                     LGVVDGMSRIAEAVNESSTTITALGQSSEEIHSIIQVINGIAEQTNLLALNAAIEAAR
                     AGEAGRGFAVVADEVRNLAARTAQSTQEITGMIERIRSSTTQAVNSMQAGVTRVNDGV
                     HLARQAGESISEIRGGAQRAAEVVEEISHTIGEQSKASGEVAQRVEQIARMSQQNSQT
                     VDELAAAARHLDKVARSMQSSVLQFQT"
BASE COUNT          221 a          610 c          634 g          341 t
ORIGIN      
        1 ggttcaggtc tggaactgca gcaccgagct ctgcatgctg cgcgcgacct tgtccaggtg
       61 ccgtgcggcg gcggccagtt cgtccacggt ctggctgttc tgctgcgaca tgcgggcgat
      121 ctgctcgacg cgctgggcca cctcgccgga ggccttgctc tgctcgccga tagtgtggga
      181 aatctcctcc accacctcgg ccgcccgctg ggcgccgccg cgaatctcgc tgatcgactc
      241 gccagcctgg cgcgccaggt gcacaccgtc gttcacccgc gtcacgccgg cctgcatgct
      301 gttcaccgcc tgcgtcgtgc tgctgcggat gcgttcgatc atgccggtga tctcctgggt
      361 cgactgcgcc gtgcgcgccg ccaggttgcg cacctcgtcg gcgaccacgg cgaagccgcg
      421 gccggcctcg ccggcacgcg ccgcctcgat ggcggcgttg agcgcgagca ggttggtctg
      481 ctcggcgatg ccgttgatca cctggatgat cgaatggatt tcctcggacg actggcccag
      541 cgcggtgatg gtggtggacg actcgttgac cgcctcggca atgcggctca tgccgtcgac
      601 cacgccgaga atcacctgac cgccgtcgct ggccagccgc tcggactggg atgaaatggc
      661 ttgcgcgttg cgcgcgtgct cggcgatctg cgcgatgttg tggatcatct gctccatggc
      721 cgcggccatg ctggtggcat tgtccgactc ctcgtgagcg ctgtggacga tgctctgcga
      781 ggcgccgctg aggttctgcg cggtgtcctg cagctgttcg ctgtcgcggc gtatggtctc
      841 gatcatctgc ttgaggttgt tctgcatgtc ggccagcgac tgctgcagct ggccggcttc
      901 gtcgttgctg tcgacctgga tgatgctgcg caggttgccc tgggcgatgg cgcgggccac
      961 cgccacggtc ttgccgagcg ggcgcagcac ggccttcatc aggtgcccgg tgagcagggc
     1021 gagcagcagg cagaccagca ggatgccgct gaccagcagc caggcggcgt tgcgcgtggc
     1081 cgcctggctc tcggcgcgta cctgggcggc gtgctgttcg atcagctcgc tcaaggcctc
     1141 gttcttcgct tccagttcgg aaaagctctg ctcgaacgcc gccatctcgc cgcgtgcgcg
     1201 ctgcgggtcg cccagggcca ggccgacgat gcgctcggcc tgggcgatgt aggcgttgag
     1261 cgccggttgc gactggccga tggcgctgcg gatttcctcg ctcagcggca gctcggcgtt
     1321 ggccgccatg gtgcgctgga accactggct gtgttcgcgc aggtcggccc ggacctgctc
     1381 ggccgcggcc gtgtcgcccg gctgggcata gaaggcggcc agcacgtcgg cgcgcagggc
     1441 gtcgtgcatc atgtcgccct ccaggtggtt gcgcagggca ctgacgctca gctcgctgtc
     1501 cgcgagcacc tcgctcaggc gcatctgccc ccagaagccg acgccgccga gcagggtggc
     1561 ggcgaccacg ctgatggcgc cgcaggcgat cattttctgg cggatgttca tgctgctgtc
     1621 tccgagggcc gactgttcgt caagcctagt tcaggggcgg cagcacgcga ggctcagggc
     1681 ttttcctgca gcgccttgga ccaggccagc agctctatcg gctggcgctc gtcccagatg
     1741 cgccgccaga gcacctgcag ctgttcggcg ccgccgcggc tgaagggcag gcggtccacc
     1801 cagggc
//
LOCUS       DATIHC010000244         1960 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12284, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000244 DATIHC010000000
VERSION     DATIHC010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1960)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1960)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1960
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12284"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..293)
                     /locus_tag="VLF16_03845"
     CDS             complement(<1..293)
                     /locus_tag="VLF16_03845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HSX70044.1"
                     /translation="MGYQKIQVPANGEKITVNADMSLNVPNNPIIPFIEGDGIGVDIS
                     PVMIKVVDAAVEKAYAGQRKIAWMEVYAGEKATQVYDQDTWLPKETLEAVRDYV"
     gene            612..1073
                     /locus_tag="VLF16_03850"
     CDS             612..1073
                     /locus_tag="VLF16_03850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HSX70045.1"
                     /translation="MRFTPHVTVATVVEDQGRFLLVEELAGGQAVFNQPAGHLEADES
                     LIEAALRETLEETGWQVELTAVTGIYLYTAPSNGVTYQRVCFAARPLRHLPDAPLDDG
                     IIGPRWLTREELAAQPERWRSELVLRCIDDYLAGERHDLSLIRDPADHGPA"
     gene            1141..>1960
                     /gene="mnmA"
                     /locus_tag="VLF16_03855"
     CDS             1141..>1960
                     /gene="mnmA"
                     /locus_tag="VLF16_03855"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007951446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HSX70046.1"
                     /translation="MREPANTRVIVGMSGGVDSSVSALLLLEQGYQVEGLFMKNWEED
                     DGTEYCTAMADLADAQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDIL
                     CNREIKFKAFLDYALSLGADLIATGHYVRRRDVDGRSELLKGLDPNKDQSYFLHAVGG
                     EQIGRTLFPVGELEKPQVRAIAEKYDLATAKKKDSTGICFIGERRFSDFLKQYLPAQP
                     GDIETTEGEVIGRHVGLMYHTIGQRQGLGIGGIKARGAQKGGGEHAPWFVARKDV"
BASE COUNT          356 a          658 c          583 g          363 t
ORIGIN      
        1 acgtagtcgc gcacggcttc cagggtttct ttcggcagcc aggtgtcctg gtcgtagacc
       61 tgggtggctt tctcaccggc gtagacttcc atccaggcga tcttgcgctg gccggcgtag
      121 gctttttcga cggccgcgtc gacgaccttg atcatcaccg ggctgatatc gacgccgata
      181 ccgtcaccct cgatgaacgg gatgatgggg ttgttcggca cgttcaggga catgtcggcg
      241 ttgacggtga ttttttcgcc gttcgcaggc acctggatct tctggtatcc catgctggac
      301 tccgtttgtt ttcgtggtct gacaatccgc cgcactggtg gcgcggcgaa cgatacttct
      361 gggtctcgga aaggtgccgc attcttgtag tttttctaca gaaagtcacg cacttttcgc
      421 catttactgg tagctcgacg acagtctaga ctgcttgaaa cctggctcag cgcgctttat
      481 gtagtcaaac tacagcgacg ctacagaatg cctctcgaag gcgctttcaa tcctagcagc
      541 tcggccccag attgctcttt gactgccctt gcagccgaca gtttgccgcc accagcggag
      601 gttctaacgc aatgcgcttc accccccatg tcacagtcgc caccgtcgtc gaggaccagg
      661 gccgcttcct gctggtcgag gaactggccg gcggccaggc ggtatttaat cagcccgctg
      721 gccatctgga agccgacgaa agtctcatcg aggccgcctt gcgcgaaacc ctggaggaga
      781 ccggttggca agtcgagctg accgccgtca ccggcatcta cctgtacacc gcccctagca
      841 atggcgtgac ctaccagcgc gtgtgcttcg ccgccaggcc gttgcgccac ctgcccgacg
      901 cgccgctgga cgacggcatc atcggtccgc gctggctgac ccgcgaggag ttggcggccc
      961 agcccgagcg ctggcgcagc gagctggtgc tgcgctgcat cgacgactac ctggccggcg
     1021 aacgccacga cctcagcctg atacgcgacc cggccgatca cggcccggcc tgattcgccg
     1081 cgcgccgccc gctcctgata gaatcgccca ctttctgcag tcagccccct tcgaattccc
     1141 atgcgcgaac cagccaatac ccgcgtgatc gtcggcatgt ccggcggcgt cgactcctcc
     1201 gtttccgccc tactactgct cgagcagggc taccaggtgg aaggcctgtt catgaagaac
     1261 tgggaagagg acgacggcac cgaatactgc accgccatgg ccgacctggc cgacgcccag
     1321 gccgtgtgcg accgcatcgg catcaagctg cacaccgcca acttcgcggc ggaatactgg
     1381 gacaacgtgt tcgagcactt cctcgccgaa tacaaggccg ggcgcacgcc gaacccggac
     1441 atcctgtgca accgcgagat caagttcaaa gccttcctcg actatgcgct gagcctcggc
     1501 gccgacctga tcgccaccgg ccactatgtg cgccgtcgcg atgtcgacgg ccgtagcgaa
     1561 ctgctcaaag gcctcgaccc gaataaggac cagagctact tcctgcacgc cgtcggcggc
     1621 gagcagattg gtcgcaccct gttcccggtc ggcgaactgg agaagccgca ggtgcgcgcc
     1681 atcgccgaga aatacgacct ggccacggcc aagaaaaagg actccaccgg catctgcttc
     1741 atcggcgagc gccgcttcag cgatttcctc aagcagtatc tgccggccca gccgggcgac
     1801 atcgagacca ccgaaggcga ggtcatcggc cgccatgtcg gcctgatgta ccacaccatc
     1861 ggccagcgcc agggcctggg catcggcggc atcaaggcgc gcggggcgca gaagggcggt
     1921 ggcgagcacg cgccctggtt cgtcgcgcgc aaggacgtgg
//
LOCUS       DATIHC010000245         1925 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37765, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000245 DATIHC010000000
VERSION     DATIHC010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1925)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1925)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1925
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37765"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..813
                     /locus_tag="VLF16_03860"
     CDS             <1..813
                     /locus_tag="VLF16_03860"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006306 - DNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HSX70047.1"
                     /translation="NLLWWGKTGNYTLPKLKKFYSDAPAGLVPRTLWFASDVDQTRTA
                     KKEMKDLFPDDPFTTPKPERLIQRILHIATNPGDLVLDSFLGSGTTAAVAHKMGRRWI
                     GIEMGEHAQTHCLPRLQKVVDGEQGGISQAVNWQGGGGFHFVRLGEPVFQADGSIHPQ
                     IRFATLARYVWFLENRAPHSAGQFDSPLLGIVGEGDSAVAYVLLYNGILGDRRANGGN
                     VLTSVLWPYLQSLAPEHCGRWVIYGEASRMAESRRRALHISFKQIPYDIRMK"
     gene            817..>1925
                     /locus_tag="VLF16_03865"
     CDS             817..>1925
                     /locus_tag="VLF16_03865"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HSX70048.1"
                     /translation="MAFELKDYQKKALGPTGEEAGGALEVFLREAKGATSAQALQRAF
                     NLARRASMGENLREAPYRPLAREGEEGHLVPQVCIRIPTGGGKTLMAAHAIERAARHY
                     VGANFPVVLWLVPTNTIRSQTRDALLTPGHPYREALLSYWPADRLAVVDITDCTQLRA
                     QDFGNKTIVVVGTRQTLQVENTASRDVYAYKEDFEPHFSATEEQPYFERVSQADLDAN
                     ASLRKLLGQAGIGKVKRSFANLLACHRPIVIVDEAHNARGDLSYEVFRRIRPACVIEW
                     TATPARDQNVLYHVSAQELKAEHMIKLPIALSPHPNWQEAVRDALLSRERLAELALSE
                     SEYVRPIVLLQADAVNGEVPVERLKQHLIEAHGIEA"
BASE COUNT          376 a          646 c          587 g          316 t
ORIGIN      
        1 aatcttctct ggtggggaaa aactggaaat tacacgctcc caaaactcaa aaagttctat
       61 tccgacgccc cagccggcct agtgccacgc acactatggt tcgcttctga tgtagatcaa
      121 actcgtacag ccaagaagga aatgaaggac ttatttcccg atgacccatt cacaacaccg
      181 aaacccgaac gcttaatcca acgcatcctc catatcgcca ccaaccccgg cgacctggtc
      241 ctcgacagct tcctcggctc cggcaccaca gccgccgtcg cccacaagat gggccgccgc
      301 tggatcggca tcgagatggg cgagcatgcc cagacccatt gcctgccgcg cctgcagaag
      361 gtggtggacg gcgaacaggg cggtatctcc caggccgtga attggcaggg cggtggcggc
      421 ttccacttcg tgcgcctggg cgaaccggtg ttccaggccg atggcagcat ccacccgcag
      481 attcgcttcg ccaccctggc gcgttatgtg tggttcctgg aaaaccgcgc gccccacagc
      541 gccggccagt tcgactcgcc gctgctgggt atagtgggcg aaggcgacag cgcggtggcc
      601 tatgtgctgc tgtacaacgg catactcggc gaccgccgcg ccaacggcgg caatgtgctg
      661 acctcggtgc tctggcccta cctgcagagc ctggcgccgg agcactgcgg gcgctgggtg
      721 atctacggcg aggcctcgcg catggcggag agccgccgcc gtgccctgca catcagcttc
      781 aagcaaatcc cctacgacat caggatgaag taagccatgg ccttcgagct caaggattat
      841 cagaagaagg ccctcggccc caccggcgag gaggctggcg gcgcgctcga ggtttttctg
      901 cgcgaggcca agggcgcgac cagtgcccag gcgctgcaac gcgccttcaa cctggcgcgc
      961 cgtgccagca tgggcgagaa cctgcgcgag gcgccctatc ggccgctggc gcgcgaaggc
     1021 gaagaaggcc atctggtgcc gcaggtgtgc atccgtattc ccactggcgg cggcaagaca
     1081 ctgatggcag cccatgccat cgaacgggca gcgcgccatt acgtgggcgc gaatttcccc
     1141 gtggtgctgt ggctggtgcc gactaacacc atccgcagcc agacccgcga tgccctgctc
     1201 acccctggcc acccctaccg cgaggctcta ctcagttact ggccggccga ccgcctggcg
     1261 gttgtagaca tcaccgactg cacccagttg cgtgctcagg atttcggcaa caagacgata
     1321 gtggtggtcg gcacccgcca gaccctgcag gtggagaaca ccgccagccg cgacgtgtac
     1381 gcctacaagg aagacttcga gccacatttc tcggccaccg aggagcagcc ctatttcgaa
     1441 cgggtcagcc aggccgacct ggatgccaat gcctcgctgc gcaagctgct gggccaggcc
     1501 ggcatcggca aggtcaagcg ttccttcgcc aacctgctgg cctgccaccg ccccatcgtg
     1561 atcgtcgacg aggcgcataa cgcccgtgga gacctgtcct acgaagtgtt ccgccgtatc
     1621 cgcccggcct gcgtgatcga gtggacggcc acgccggcgc gcgaccagaa cgtgctctac
     1681 cacgtttcgg cgcaggagct gaaggccgag cacatgatca agctgccgat tgccctgtca
     1741 ccccacccca actggcagga agcggtacgc gacgccctgc tgagccgcga gcggctggcc
     1801 gaactggccc tgagtgaaag cgaatacgtg cgccccatcg tgctattgca ggccgacgcg
     1861 gtgaatggcg aagtgccagt ggagcgtttg aagcaacacc tgattgaggc gcatggcatt
     1921 gaggc
//
LOCUS       DATIHC010000246         1959 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_26074, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000246 DATIHC010000000
VERSION     DATIHC010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1959
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26074"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1048)
                     /gene="parC"
                     /locus_tag="VLF16_03870"
     CDS             complement(<1..1048)
                     /gene="parC"
                     /locus_tag="VLF16_03870"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009340 - DNA topoisomerase IV complex
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HSX70049.1"
                     /translation="MSDTLDLSLEGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDG
                     LKPVQRRIVYAMSELGLDADSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSY
                     RYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTMDE
                     PATLPARLPNLLLNGTTGIAVGMATDVPPHNLREVASACVRLLDEPGADVEQLMEHVQ
                     GPDFPTEAEIITPRSDLLKIYQTGRGSVRMRAVYRVEDGDIVVTALPHQVSGAKVLEQ
                     IAAQMQAKKLPMVADLRDESDHENPCRIVIIPRSNRVDAEELMTHLFATTDLESSYRV
                     NTNVIGLDGKPQVKD"
     gene            complement(1062..1589)
                     /locus_tag="VLF16_03875"
     CDS             complement(1062..1589)
                     /locus_tag="VLF16_03875"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016852203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02281 family clan AA aspartic protease"
                     /protein_id="HSX70050.1"
                     /translation="MSERPAGQRAARVMLVLAWIAALALATHWFADWEESRDNPNRQP
                     QSVHGNGYIEVSLASSRGGHYVLDGQIDGRTVTFLLDTGATAVAVPQKLAGELSLKPG
                     AAVQIRTANGIATGWRTRLGLLQLGDIQLRDVAALITPGMDGDEVLLGMSALKQLEFT
                     QKGGTLVLRQSTSMQ"
     gene            complement(1586..>1959)
                     /locus_tag="VLF16_03880"
     CDS             complement(1586..>1959)
                     /locus_tag="VLF16_03880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003285195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA topoisomerase IV"
                     /protein_id="HSX70051.1"
                     /translation="CILMSEAGQLRSPLTPQSDTRYPRSFGDLVFHDDKLFSLERLEH
                     RICRRNPSTGAQEKCWSFSAAAQESGRVYPEPYGAAEALWLDEDGAWLGLDNNDLARA
                     DGERRPLLWQFKPPAGGWSAK"
BASE COUNT          269 a          641 c          708 g          341 t
ORIGIN      
        1 ggtctttcac ctgcggcttg ccgtcgagac cgatgacgtt ggtgttgacc cggtagctgg
       61 actccagatc ggtggtggcg aacaggtggg tcatcagctc ttcggcatcg acgcgattgg
      121 agcgcgggat aatgacgatg cggcaggggt tttcgtggtc cgactcgtcg cgcaggtcgg
      181 cgaccatcgg cagcttcttg gcctgcatct gcgcggcgat ctgctccagc accttggcgc
      241 ccgagacctg gtgcggcagg gcggtgacca cgatgtcgcc gtcctcgacg cggtacacgg
      301 cgcgcatgcg caccgagccg cggccggtct ggtagatctt cagcagatca ctgcgcgggg
      361 tgatgatttc cgcctcggtg gggaagtccg ggccctgcac gtgttccatc agctgttcga
      421 cgtcggcgcc cggctcgtcg agcaggcgca cgcaggcgct ggcgacttcg cgcaggttgt
      481 gcggcggcac gtcggtggcc atgcccacgg cgatgccggt ggtgccgttc agcaagaggt
      541 tgggcagacg cgccggcagg gtcgccggtt cgtccatggt gccgtcgaag ttcggcaccc
      601 agtccacggt gccctggccc agctcggaca gcagcacctc ggagtagcgc gacaggcgcg
      661 cctcggtgta acgcatggcg gcgaaggact tgggatcgtc cggcgcaccc cagttgccct
      721 ggccgtcgac cagcgtatag cggtagctga acggctgggc catcagcacc atggcctcgt
      781 agcaggcgct gtcgccgtgc gggtggtact tgccgagcac gtcgccgacg gtgcgcgccg
      841 acttcttgtg cttggagtcg gcgtccagcc ccagctcgct catggcatag acgatgcggc
      901 gctgcaccgg cttgaggccg tcgccgatgt gcggcagcgc gcggtccatg atcacgtaca
      961 tggagtagtt gagataagcc tgctcggtga agtcggccag cgaccggcgc tccacgcctt
     1021 ccaggctcag gtcgagggtg tcgctcatgc gtgcctcatg gtcattgcat cgatgtggat
     1081 tggcgcagca ccagggtgcc gcccttctgg gtgaattcga gttgcttgag ggcgctcatg
     1141 ccgagcagca cctcgtcccc gtccatgccg ggggtgatca gcgccgccac gtcgcgcagc
     1201 tggatgtcgc caagctgcag caggccgagg cgggtgcgcc agccggtggc gatgccgttg
     1261 gcggtgcgga tctgcaccgc cgcgccgggc ttcaagctca gctcgccggc cagtttctgc
     1321 ggcacggcca cggcggtggc gccggtgtcg agcaggaagg tcacggtgcg cccgtcgatc
     1381 tgcccgtcca gcacgtagtg gccgccgcgg ctgctggcca ggctgacctc gatatagccg
     1441 ttgccgtgca ccgactgcgg ctggcggttg ggattgtcgc ggctctcctc ccagtcggcg
     1501 aaccagtggg tggccagggc cagcgcggcg atccaggcca gcaccagcat cacgcgggcg
     1561 gcacgctgac cggcagggcg ctcgctcact tcgcgctcca gccgccggcc ggtggcttga
     1621 actgccacag cagcgggcgg cgctcgccat cggcgcgggc caggtcgttg ttgtccaggc
     1681 ccagccaggc cccgtcctcg tccagccaga gcgcctcggc ggcgccgtag ggctcgggat
     1741 agacgcgccc gctctcctgc gcggcggcgc tgaacgacca gcacttctct tgcgcgccgg
     1801 tactcgggtt gcgccggcag atgcggtgtt caaggcgctc caggctgaac agcttgtcgt
     1861 cgtggaagac caggtcgccg aagctgcgcg ggtagcgcgt gtcgctctgc ggcgtgagcg
     1921 gcgagcgcag ctggcccgct tcggacatca ggatgcagc
//
LOCUS       DATIHC010000247         1505 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_16654, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000247 DATIHC010000000
VERSION     DATIHC010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1505
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16654"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..171)
                     /locus_tag="VLF16_03885"
     CDS             complement(<1..171)
                     /locus_tag="VLF16_03885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HSX70052.1"
                     /translation="MSARHFLSLMDFSPQELSGLIRRAIELKDLRQRGIAHEPLKGRV
                     LGMIFEKASTRTR"
     gene            491..>1505
                     /locus_tag="VLF16_03890"
     CDS             491..>1505
                     /locus_tag="VLF16_03890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HSX70053.1"
                     /translation="MTKTLHHRACHLCEAICGLTIETEDRDDGRHILSIKGDALDSFS
                     RGHICPKAVALQDIQNDPDRVRQPLRKVAGQWQPIAWNDAFELVAERFAAIQAEHGKN
                     AVAVYQGNPSVHNYGLMTHSNYFLGQLKTRNRFSATSVDQLPHHLTSYLMYGHGLLLP
                     IPDIDHTRFMLILGGNPLASNGSIMTVPDVEKRLKALKARGGKLVVVDPRRSETAAMA
                     DQHLFVRPGNDAALLLGLLNTLFDEGLTRESHLPVSGLEQVRAAVAPFTAELMSSRCG
                     VPAQDIRQLARDFAAAESAVCYGRMGVSTQAFGSLCHWLIQLINLVTGNLDRVGGALC
                     TSPA"
BASE COUNT          274 a          518 c          477 g          236 t
ORIGIN      
        1 gcgggtgcgg gtcgaggcct tctcgaagat catgcccagc acgcggccct tcagcggctc
       61 gtgggcgatg cctcgctggc gcagatcctt cagctcgatg gctcgacgga tcaggccgct
      121 cagttcctgc gggctgaagt ccatcaacga gagaaagtgc ctggcgctca tcttgttcac
      181 taccttggtt tcgacaactg tcgcagcccc gtttttcagg ggaaaaagca gcccatacaa
      241 cggcttgagc cgcgatcggg cgacaaatgg ggaggccgga tcttataagc aaacgacgca
      301 ttggagcaaa tgagcaccgg tcgagcgacg ccggcccggc gcgcatggcg ggcccgacgc
      361 ggcgcatcgg cggccatgat gcccgtcgat tcacgcgata aaggccgctg gccaagccct
      421 gcggctgcgg ccatagtcga gtctcgacga ctagaccggt cgtctcgacc agaacaatag
      481 aggctaggcc atgaccaaga ccctccatca ccgtgcctgt cacctgtgcg aggccatctg
      541 cggcctgacc atcgaaaccg aggaccgcga cgacggtcgc cacatcctgt cgatcaaggg
      601 tgatgccctg gacagcttca gccgcggcca tatctgcccg aaggccgtgg cgctgcagga
      661 catccagaac gacccggatc gcgtgcgtca gccgctgcgc aaggttgccg gccagtggca
      721 gccgatcgcc tggaatgatg ccttcgagct ggtcgccgag cgcttcgcgg cgatccaggc
      781 cgaacacggc aagaacgccg tggccgtgta ccagggcaac cccagcgtgc acaactacgg
      841 gctgatgacc cacagcaact acttcctcgg ccagctgaag acgcgcaacc gcttctccgc
      901 cacctcggtg gaccagcttc cgcatcacct gaccagctac ctgatgtacg gccacggcct
      961 gctgctgccg atcccggaca tcgaccacac ccggttcatg ctgatcctcg gtggcaatcc
     1021 gctggcgtcc aacggcagca tcatgaccgt gccggacgtg gagaaacgcc tcaaggcgct
     1081 caaggcccgc ggcggcaagc tggtggtggt cgacccgcgg cgcagcgaga cggcggccat
     1141 ggccgaccag cacctgttcg tgcgcccggg caacgacgcg gcgctgctgc tcggcctgct
     1201 caacaccctg ttcgacgagg gcctgacccg cgaaagccat ctgccggtca gtggcctgga
     1261 gcaggtgagg gcggccgtgg cgccgttcac cgccgaattg atgagcagcc gctgcggcgt
     1321 gccggctcag gacatccgcc aactggcccg cgacttcgcc gctgccgagt cggcggtgtg
     1381 ctacgggcgc atgggcgtct ccacccaggc cttcggcagt ctgtgccact ggctgatcca
     1441 actgatcaac ctggtcaccg gcaacctcga ccgggtcggc ggcgcgctgt gcaccagccc
     1501 ggcgc
//
LOCUS       DATIHC010000248         2560 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_434, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000248 DATIHC010000000
VERSION     DATIHC010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2560)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2560)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2560
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_434"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            44..1573
                     /locus_tag="VLF16_03895"
     CDS             44..1573
                     /locus_tag="VLF16_03895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015275486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDOD domain-containing protein"
                     /protein_id="HSX70054.1"
                     /translation="MPTQNALPRSLDAWLKQLDGIRLPVASSHHETIRRTLADSRKSM
                     REIADRMQASPAIALAVLRDANRHVSELGEPAESLELALTRLGLKRAEALLAQLPVQD
                     EQDIPLPLRQLQLIGLHASQQANGLFAGRLARLWQEIHWGSLLFLAPLWPLAASRPEL
                     FEAWERRVLGQGEPASKVERELLGVPLLQLCLALARHWRLPEWIIQGYRLLVEDRRLL
                     VKALHIARDNEHPLHQQQLLDADPTLQRWLTQPGNSVLLANGLALSSHHNWSCEHHLR
                     WQRLAGLYLHTAIPELQQLIHQQAALSARQHQQPGLWHPAEALLWPWDACRLKLLQAP
                     KPAAPPNADTVRQWKEQCTRLLAQPSAFANVVQLTECASLALQCAGMRRVLVLLADRN
                     HTRLQAQQALGLAEGAANLRLDPAQSQVLRRLLAEPGQLRLSPANLAQVSALLPGSLK
                     ALFAGEHLILRSIASNGRVAMLLVVDQGGGELNETTLPVFGKTVQCIERALAGFARRG
                     S"
     gene            1611..2426
                     /locus_tag="VLF16_03900"
     CDS             1611..2426
                     /locus_tag="VLF16_03900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HSX70055.1"
                     /translation="MSAFSGLPLVIEPAELASRLQAPELILVDLSPAARYAEGHLPGA
                     RWVDSKRTQWGQPPAPGLLPDKAQLEALFAELGHRPEAVYVVYDDEGGGWAGRFIWLL
                     DVIGHPHYHFLNGGLQAWMGEGRALSGDVPAPISGSVNLVLHDEPTASREYLQNRLGA
                     ADLAVWDARGPEEFRGEKRLSARGGHVPGAVNFEWTAGMDPQRGLRIRADMAEALEGL
                     GITRDKEVITHCQTHRRSGFTYVVAKALGYPRVRAYAGSWSEWGNLPDTPIEH"
     gene            2441..>2560
                     /locus_tag="VLF16_03905"
     CDS             2441..>2560
                     /locus_tag="VLF16_03905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003246535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HSX70056.1"
                     /translation="MKERLFILSQYLLPHHLLSRLIGFAAECRAAWFKDRLIGW"
BASE COUNT          402 a          952 c          835 g          371 t
ORIGIN      
        1 actataggct gtaaaggcga aaagccagtt tggccacccc cgcatgccta ctcagaacgc
       61 cctaccacgc agtctcgacg cctggctcaa gcagctggac ggcatacgcc tgcccgtcgc
      121 cagcagccac cacgagacca ttcgccgcac cctggcggac agccgcaagt cgatgcgcga
      181 gatcgccgac cgcatgcagg ccagcccggc catcgccctc gccgtgctgc gcgatgccaa
      241 ccgacacgtc agcgaactgg gcgagccggc cgagagcctg gagcttgccc tcacccgtct
      301 cggcctgaag cgcgccgaag ccctgctggc ccagctgccg gtgcaggacg aacaggacat
      361 tccgctgccg ttgcgccagc tgcagctgat cggcctgcac gcctcgcaac aggccaacgg
      421 cctgttcgcc gggcgcctgg cgcgcctgtg gcaggaaatc cactggggca gcctgctgtt
      481 cctcgcgccg ctgtggccgc tggcggcgtc ccggccggag ctgttcgagg cctgggaacg
      541 ccgggtgctg ggccagggcg aaccggccag caaggtcgaa cgcgagctgc tcggcgtacc
      601 gctgctgcag ctgtgcctgg cgctggcgcg gcactggcgc ctgccggaat ggatcatcca
      661 gggctaccgc ctgctggtcg aagaccgccg cctgctggtc aaggctctgc atatcgcccg
      721 cgacaacgaa catcccttgc accagcaaca gctgctggac gccgacccga ccctgcagcg
      781 ctggctgacc caacccggta acagcgtgct gctggccaac ggtctggcgc tgtccagcca
      841 ccacaactgg agctgcgagc accacctgcg ctggcagcgc ctcgccgggc tctacctgca
      901 cacggcgata ccggagctgc agcagctgat tcaccagcag gccgccctca gcgcccgcca
      961 gcaccagcaa ccggggctgt ggcacccggc cgaagcactg ctgtggccct gggatgcctg
     1021 ccgtctcaag ttgctgcagg cgccgaaacc ggccgcgccg ccgaacgccg acacggtccg
     1081 ccagtggaag gaacagtgca cgcgcctgct ggcgcagccc tcggccttcg ccaacgtggt
     1141 gcagctcacc gagtgcgcca gcctggcgct ccagtgcgcc ggcatgcggc gtgtgctggt
     1201 gctgctggcc gaccgcaacc acacgcgtct gcaggcgcag caggcactcg gactggccga
     1261 gggcgcggcg aatctgcgcc tggatccggc tcagagccag gtgctgcgcc gcctgctcgc
     1321 cgaacccggg caactgcgcc tgagcccggc caacctggcg caggtctcgg cgctgctgcc
     1381 cggcagcctg aaggcgctgt tcgccggcga gcacctgatc ctgcgctcga tcgccagcaa
     1441 cggccgggtg gcgatgcttc tggtggtcga ccagggcggc ggcgaactca acgagacgac
     1501 ccttccggtg ttcggcaaaa ccgtgcaatg catcgagcgc gcgctggccg gcttcgcccg
     1561 ccggggcagc tgatacaatc gcccctttca tcccaccccg gagactctgc atgtccgcct
     1621 tctccggcct gccgctggtg atcgagccag ccgagctggc ctctcgcctg caggcccccg
     1681 agttgatcct ggtcgacctc agcccggccg cccgctacgc cgagggccac ctgccgggtg
     1741 cccgctgggt cgacagcaag cgcacccagt ggggccagcc gccggccccc ggcctgctgc
     1801 cggacaaggc gcagctcgaa gccctgttcg ccgaactcgg ccatcgcccc gaggcggtct
     1861 acgtggtcta cgacgacgag ggcggcggct gggccggccg cttcatctgg ctgctcgacg
     1921 tgatcggcca cccacactat cacttcctca atggcggact gcaggcctgg atgggcgagg
     1981 ggcgcgcgct gagcggtgac gttccggcgc cgatctccgg cagcgtgaat ctggtcctgc
     2041 acgacgaacc caccgccagc cgcgagtatt tgcagaaccg cctcggcgcg gcggacctgg
     2101 cggtatggga tgcccgcggc cccgaggaat tccgcggtga gaaacgcctc tccgcccgtg
     2161 gcggtcatgt gcccggcgcg gtcaacttcg agtggaccgc cggcatggac ccgcagcgcg
     2221 gcctgcgcat ccgcgccgac atggccgagg ccctggaagg cctcggcatc accagggaca
     2281 aggaagtgat cacccattgc cagacccatc gccgctccgg cttcacctac gtggtggcca
     2341 aggcgctggg ctatccgcgg gtcagggcct acgccggctc ctggtccgag tggggcaatc
     2401 tgcccgacac cccgatcgaa cattgatgca aggaaccccg atgaaagagc gcctgtttat
     2461 cctcagccag tacctgctgc cgcaccacct gctgtcgcgc ctgatcggct tcgccgccga
     2521 gtgccgcgcg gcctggttca aggaccgcct gatcggctgg
//
LOCUS       DATIHC010000249         5516 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19356, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000249 DATIHC010000000
VERSION     DATIHC010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5516
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19356"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..754
                     /gene="dctP"
                     /locus_tag="VLF16_03910"
     CDS             <1..754
                     /gene="dctP"
                     /locus_tag="VLF16_03910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="C4-dicarboxylate TRAP substrate-binding protein
                     DctP"
                     /protein_id="HSX70057.1"
                     /translation="LGDVQIIAPSLAKFEQYTKQVQIFDLPFLFDDMAAVDRFQHSPE
                     GQKLLTSMESKGITGLAYWHNGLKQLSANKPLREPKDARGLKFRVQASAVLEEQFKAV
                     RANPRKMSFAEVYQGLQTGVVNGAENPYSNIYSQKMHEVQKHITESDHGLLDYMLITN
                     TKFWNGLPEDVRTELGKIVVEVTAEVNKQADDLNQGDKQRILDAKTTEIITLTPEQRG
                     EWREAMKPVWKKFEGEIGAELIKAAEAANQAQ"
     gene            819..1451
                     /gene="dctQ"
                     /locus_tag="VLF16_03915"
     CDS             819..1451
                     /gene="dctQ"
                     /locus_tag="VLF16_03915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003197903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate TRAP transporter small permease
                     protein DctQ"
                     /protein_id="HSX70058.1"
                     /translation="MNALRRVWDHFEEGFIAFLLAAMTLVTFVYVILNNLYTLFYDLA
                     DRFEGASEILFAIGDAILGAAQAMTWSNALTKALFAWLIFFGLAYGVRTAGHIGVDAL
                     VKLAPRHVQRVIGVIACLCCLGYAGLLSVASFEWVQTLFTAAIGAEDLGHYGIMQWHI
                     GLIVPLGFALVFVRFLEILVRILRNRQTGLGLADEAAEAIKLTEHEEPKP"
     gene            1448..2731
                     /gene="dctM"
                     /locus_tag="VLF16_03920"
     CDS             1448..2731
                     /gene="dctM"
                     /locus_tag="VLF16_03920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate TRAP transporter large permease
                     protein DctM"
                     /protein_id="HSX70059.1"
                     /translation="MTVLFLFLLLFLLMFIGVPIAVSLGLAGSLTIMLFSPDSVRSLA
                     IKLFETSEHYTLLAIPFFLLAGAFMTTGGVARRLIDFANACVGHIRGGLAIAAVLACM
                     LFAALSGSSPATVAAVGSIAIAGMVRSGYPQSFGAGIVCNAGTLGILIPPSIVMVVYA
                     AATETSVGKLFMAGVVPGVLLGLTLMIAIYIVAVKKNLPALPRATLREWLGAARKAIW
                     GLLLMVIILGGIYSGMFTPTEAAAVAAIYSAFIALFVYKDMRVREVPKVLLESAKLSI
                     MLMFIIANAMLFAHVLTTEQLPQQITAWVLEAGLTPITFLLVVNIVLLIAGAFMEPSA
                     IILILAPILFPIAMELGIDPIHLGIIMVVNLEIGLVTPPVGLNLFVTSAVTGMPLTST
                     IRAAMPWLMILLAFLILVTYVPWISLALPNWLGMS"
     gene            complement(2780..4699)
                     /locus_tag="VLF16_03925"
     CDS             complement(2780..4699)
                     /locus_tag="VLF16_03925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003162194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HSX70060.1"
                     /translation="MTPLAYACLLAAATYVEAGAYSGMVVFGDSLSDAGQRPEAAAPS
                     NPVRHTNRVGPTYRVSESYGSTSPMLINDGLGLAPQVASTNLVRALSGQPDGNNWAVG
                     GYRTEQIYNSITGVYDPVTGIGGSQVRAGLNYSDPLIRQRDGYLVDLRSRGLSVDPNT
                     LFYLNGGGNDFLQGLITDDASARAAAGRLVDGVRALQAAGGRYFMVPLLVDVASPVTG
                     GLPNVAQQAQAASFNAELAAQLGAVPAEVIPLNVPLLYREVLADPAAFGFDPTQNLLG
                     TCFSGCAVINPVYGIGGATPDPDRLIYADVVHPSTAMQRILADQGLSILAAPWEIGLL
                     PQAAESALRGSREQLRRQWLADWGDWQARGKWRGFVSGSSQRSDYDGDDTAAAGDGHG
                     ESLGAGASYRLDEHWRLGLSLDVQQQDLELGARDSDYGLRSYLAGAFAQYQDGLLWGD
                     LSLSAGYLDYHDLERRFALGRTTRTERGDTEGRVLALGGRIGVELSPAERLRLAPFVS
                     ADVARIEVDGYREDGASSTALNYDDQRLDSQRLGVGLQARFALADDAELFGEVVRERE
                     FEDDEQEVDMALNSVAGVDFSLVGAALERDQTRASVGLRQRLAPDLALQVGYDYRKAG
                     DDDLHGIGLSLSLDW"
     gene            complement(4877..>5516)
                     /locus_tag="VLF16_03930"
     CDS             complement(4877..>5516)
                     /locus_tag="VLF16_03930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011061432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HSX70061.1"
                     /translation="VLADAAPRKFVVVHLLGTHMSYRYRYPPEYERFADRSGVPEHVS
                     DDQLPTYNAYDNAVLYNDFVVSSLIERFAATDPNGFLLYLSDHGEAVFDAPQPQVLGR
                     NEAAPTGPMYTIPFILWNSPKWQARDYRQALARPFSSSALVHTWADLAGLDFAEHDRS
                     RSLVAAEFKPRPLLIGNPQRPQNLIDFSLIRPKASDAEVARQEPPKGGAQPL"
BASE COUNT          816 a         1914 c         1865 g          921 t
ORIGIN      
        1 gctcggcgac gtgcagatca tcgccccctc gctggccaag ttcgagcagt acaccaagca
       61 ggtgcagatc ttcgacctgc ccttcctgtt cgacgacatg gccgcggttg accgcttcca
      121 gcacagcccc gagggccaga agctgctgac ctccatggag tccaagggca tcaccggcct
      181 ggcctactgg cacaacggcc tgaagcagct gtcggcgaac aagccgctgc gcgagcccaa
      241 ggacgcccgc ggcctgaagt tccgcgtgca ggcctccgcc gtgctcgagg agcagttcaa
      301 ggccgtgcgc gccaacccgc gcaagatgag cttcgccgag gtctaccagg gcctgcagac
      361 cggcgtggtc aacggtgccg agaaccccta ctcgaacatc tactcgcaga agatgcacga
      421 agtgcagaag cacatcaccg agtccgacca tggcctgctg gactacatgc tgatcaccaa
      481 caccaagttc tggaacggcc tgccggaaga tgtgcgcacc gagctgggca agatcgtcgt
      541 cgaagtcacc gccgaagtga acaagcaggc cgacgacctc aaccagggcg acaagcagcg
      601 catcctcgac gccaaaacca ccgagatcat caccctcacc ccggagcagc gtggcgagtg
      661 gcgcgaggcg atgaagccgg tgtggaagaa gttcgaaggt gaaatcggcg ccgagctgat
      721 caaggccgcc gaagccgcca accaagccca gtgatgccgg tgccgccgcc ctcgtggcgg
      781 cggcttcccg ccgtacccgc catcgggaga tgcctgccat gaacgccttg cggcgcgtct
      841 gggaccactt cgaagagggc ttcatcgcct tcctcctggc ggccatgacg ctggtgacct
      901 tcgtttacgt catcctcaac aacctctaca ccctcttcta cgacctggcc gaccgcttcg
      961 aaggcgccag cgagatcctt ttcgccatcg gcgacgccat tctcggcgcg gcccaggcca
     1021 tgacctggag caacgcgctg accaaggcgc tgttcgcctg gctgatcttt ttcggcctgg
     1081 cctacggcgt gcgtacggcc ggccacatcg gcgtggacgc gctggtcaag ctcgccccgc
     1141 gccacgtgca gcgggtgatc ggcgtgatcg cctgcctctg ctgcctgggc tacgccggcc
     1201 tgctcagcgt ggccagcttc gaatgggtac agaccctgtt caccgccgcc atcggcgccg
     1261 aagacctggg ccactacggc atcatgcagt ggcacatcgg cctgatcgtg ccgctgggct
     1321 tcgccctggt gttcgtgcgt ttcctcgaga tcctcgtgcg catcctgcgt aaccgccaga
     1381 ccggcctggg cctggccgac gaggccgccg aggcgatcaa gctgaccgag cacgaggagc
     1441 cgaagccatg accgtgttgt tcctcttcct cctgctgttc ctgctgatgt tcatcggcgt
     1501 gcccatcgcc gtgtccctcg gcctggccgg ctcgctgacc atcatgctgt tcagccccga
     1561 ctcggtgcgc tcgctggcga tcaagctgtt cgagaccagc gagcactaca ccctgctggc
     1621 cattcccttc ttcctgctgg ccggcgcctt catgaccacc ggcggcgtgg cgcgccggct
     1681 gatcgacttc gccaacgcct gcgtcggcca catccgtggc ggcctggcga tcgccgcggt
     1741 gctggcgtgc atgctgttcg ccgcgctgtc cggctcgtcg ccggccaccg tggcggcggt
     1801 cggctccatc gccatcgccg gcatggtgcg ctcaggctat ccgcagtcgt tcggtgccgg
     1861 catcgtgtgc aatgccggca ccctgggcat cctgatcccg ccgagcatcg tcatggtggt
     1921 gtacgccgcc gccaccgaga cttcggtagg caagctgttc atggccggcg tcgttcccgg
     1981 cgtgctgctc ggcctgacgc tgatgatcgc catctacatc gtcgcggtga agaagaacct
     2041 gccggccctg ccgcgcgcca ccctgcgcga atggctgggc gccgcacgca aggcgatctg
     2101 gggcctgctg ctgatggtga tcatcctcgg cggcatctac tccggcatgt tcacgcccac
     2161 cgaggcggcc gcggtggcgg cgatctactc cgccttcatc gccctgttcg tgtacaagga
     2221 catgcgcgtg cgcgaggtgc ccaaggtgct gctggagtcg gccaagctga gcatcatgct
     2281 gatgttcatc atcgccaacg ccatgctctt cgcccacgtg ctgaccaccg agcagctgcc
     2341 gcagcagatc accgcctggg tgctggaggc cggcctgacg ccgatcacct tcctgctggt
     2401 ggtgaacatc gtgctgctga tcgccggtgc gttcatggag ccgtcggcga tcatcctgat
     2461 cctggcgccg atcctcttcc ccatcgccat ggagctgggc atcgacccga tccacctggg
     2521 catcatcatg gtggtgaacc tggagatcgg cctggtgacg ccaccggtgg gactcaacct
     2581 gttcgtcacc tcggcggtca ccggcatgcc gctgaccagc accatccgcg cggccatgcc
     2641 gtggctgatg atcctgctgg cgttcctgat cctggtcacc tacgtgccgt ggatctccct
     2701 ggcgctgccc aactggctcg gcatgagctg acccagaccc gcgacagcga aaggcccggc
     2761 atccgccggg ccttttcgtt taccagtcca gcgacaggct caggccgatg ccgtgcaggt
     2821 cgtcgtcgcc ggccttgcgg tagtcgtagc cgacctgcag cgccaggtcc ggcgccaggc
     2881 gctggcgcag gccgacgctg gcgcgggtct ggtcgcgttc cagggccgcg ccaaccaggc
     2941 tgaagtcgac acccgcgacg ctgttcagcg ccatgtccac ctcctgctcg tcgtcctcga
     3001 actcgcgctc gcgcaccacc tcgccgaaca gttcggcatc gtcggccagg gcgaagcgcg
     3061 cctgcaggcc aacgcccagg cgctgcgaat ccaggcgttg gtcgtcgtag ttcagggccg
     3121 tggaactggc gccgtcttcg cgatagccgt ccacctcgat gcgcgccacg tcggcgctga
     3181 cgaaaggcgc caggcgcagg cgctcggccg ggctcagctc gacgccgatg cgcccgccca
     3241 gggccagcac ccggccctcg gtgtcgccgc gttcggtgcg ggtggtgcgg ccgagggcga
     3301 agcggcgctc gaggtcgtgg tagtccaggt agccggcgct caggctcagg tcgccccaca
     3361 gcaggccgtc ctggtactgg gcgaaggcgc cggccaggta gctgcgcagg ccatagtccg
     3421 agtcgcgcgc gccgagctcc aggtcctgct gctgcacgtc caggctcagg ccgaggcgcc
     3481 agtgctcgtc gaggcggtag ctggcgccgg cgcccaggct ctcgccatga ccgtcgccgg
     3541 ccgcggcggt gtcgtcgccg tcgtagtcgc tgcgctggct gctgccggag acgaagccgc
     3601 gccacttgcc ccgggcctgc caatcgcccc agtcggccag ccattgccgg cgcagctgtt
     3661 cgcggctgcc gcgcagggcc gactcggccg cctgcggcag caggccgatc tcccagggcg
     3721 cggcgaggat cgacagcccc tggtcggcga ggatgcgctg catggcggtg ctgggatgga
     3781 ccacgtcggc gtagatcagc cggtccgggt cgggcgtggc gccgccgatg ccgtataccg
     3841 ggttgatcac ggcgcagccg gagaagcagg tgccgagcag gttctgcgtc gggtcgaacc
     3901 cgaaggcggc cgggtcggcc agcacctcgc ggtacagcag cggcacattg agcgggatga
     3961 cctcggccgg cacggcgccg agctgcgccg ccagctcggc gttgaagctg gccgcctggg
     4021 cctgctgggc gacgttgggc aaaccgccgg tgaccgggct ggccacgtcc accagcagcg
     4081 gcaccatgaa gtagcgcccc cccgccgcct gcagcgcgcg cacgccgtcg accaggcgcc
     4141 ctgccgcggc gcgggcgctg gcatcgtcgg tgatcagccc ctggaggaaa tcgttgccgc
     4201 cgccgttgag gtagaacagg gtgttcgggt cgacgctcag gccacggctg cgcagatcga
     4261 ccaggtaacc gtcgcgctgg cggatcagcg ggtcgctgta gttgaggccg gcgcgcacct
     4321 gggagccgcc gatgccggtg accgggtcgt acacgccggt gatcgagttg tagatctgct
     4381 cggtgcggta gccgccgacc gcccagttgt tgccgtcggg ctgcccgctg agtgcgcgca
     4441 ccagattggt cgaggccacc tgcggggcca gccccagacc gtcgttgatc agcatcggcg
     4501 aggtcgagcc gtaggactcg ctgacgcggt aggtcggccc gacgcggttg gtgtggcgca
     4561 ccgggttgct cggcgcggcg gcctcggggc gctggccggc gtcgctcagg ctgtcgccga
     4621 acaccaccat gccgctgtag gcgccggcct cgacataggt ggcggcggcc agcaggcagg
     4681 cgtacgcgag gggagtcatt agtcgcttca tgtccctttc ccttgttctt gttgtgatgg
     4741 gcaagcggcg ggaatgtagg gacagcggca gggcctgcac catcgcccgg tgcaaattcc
     4801 ctcctaagac tgaaacgccg cgcgacggac tactccatcg gcgcggcgct cgttcctgcg
     4861 ggggatcgac cttgcgctag agcggctgcg cgccgccctt gggcggctcc tgccgggcca
     4921 cctcggcatc gctggctttc ggccggatca ggctgaagtc gatcaggttc tgcggccgct
     4981 gcgggttgcc gatcagcagc ggccgcggct tgaactcggc ggcgaccagg ctgcgactgc
     5041 ggtcgtgttc ggcgaagtcc aggccggcca ggtccgccca ggtgtgtacc agggccgagc
     5101 tgctgaacgg ccgcgccagc gcctggcggt agtcgcgcgc ctgccatttc ggcgagttcc
     5161 acaggatgaa cgggatggtg tacatcggcc cggtcggcgc cgcctcgttg cgtcccagca
     5221 cctgcggctg cggcgcgtcg aacaccgcct cgccgtggtc ggagaggtac agcaggaagc
     5281 cgttggggtc ggtggcggcg aagcgctcga tcaggctgga gacgacgaag tcgttgtaca
     5341 gcacggcgtt gtcgtaggcg ttgtaggtcg gcagctggtc gtcgctgacg tgctcgggca
     5401 cgccgctgcg gtcggcgaag cgctcgtact ccggcgggta gcgatagcgg tagctcatgt
     5461 gcgtgccgag caggtgcacc accacgaact tgcgcggcgc cgcatcggcc agcacc
//
LOCUS       DATIHC010000250         2186 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19358, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000250 DATIHC010000000
VERSION     DATIHC010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2186)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2186)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2186
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19358"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2186)
                     /locus_tag="VLF16_03935"
     CDS             complement(<1..>2186)
                     /locus_tag="VLF16_03935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011920660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Hpt domain-containing protein"
                     /protein_id="HSX70062.1"
                     /translation="EPIEESKEIDLGELTEVDFVAPQPDELPELHIEVSEPAREELPE
                     SMPELSSDEWHLDESLPALGAEALEPVDEPAPPAEATAEPEPEPEPEPEPEPEHQAPV
                     AAAPAPAVDRDPELVEIFLEEGFDIMDSASAALQRWMGDVDNTLEVESLQRDLHTLKG
                     GARMAEIREIGDLAHELEFLYEGVGDGRLKANGELFGVLQACHDRLSEMLEAVRGNRA
                     IPDGLALIETIKRFRADPEAQLSVPTSVHLQPVHEEVEAGDENDEILDIFLEEGDDLL
                     EAMEAAVGRWEANREDGSAIDELLRILHTLKGGARLAGQKRLGDLSHDLEQHLTEAQQ
                     QGAPWPESLFLDVQSAFEGLQQELDQLRKRLDDGHASEAQSAPAETPPATESAPAPVT
                     LAKPIVAASSRPQEAQQDKVLPFVQRAAEAAARAAAQRAPQELVKVPAELLEGLVNLA
                     GETSIFRGRVEQQVSDVGFTLGEMEATIERVRDQLRRLDTETQAQILSRYQAEAERAG
                     YEDFDPLEMDRHSQLQQLSRALFESASDLLDLKETLAAKNRDAETLLLQQARVNTELQ
                     EGLMRTRMVPFDRLVPRLRRIVRQVAGELGKQVEFHVGNAEGEMDRTVLERIVAPLEH
                     MLRNAVDHGIEPADKRRAAGKSEVGNIRLTLGREGGDILLVLADDGGGIRLDAVKRKA
                     IERGLMDEGSDLSDHEILQFILEAGFSTAEKVTQISGRGVGMDVVK"
BASE COUNT          277 a          753 c          770 g          386 t
ORIGIN      
        1 cttgaccacg tccatgccga caccgcggcc ggagatctgg gtgacctttt cagcggtcga
       61 gaagccggcc tcgaggatga actgcaggat ttcgtgatcc gacaggtcgc tgccctcatc
      121 catcaggccg cgctcgatgg ccttgcgctt gaccgcgtcg aggcggatgc cgccaccgtc
      181 gtcggccagc accaggagga tgtcgccgcc ttcgcgcccc agggtcaggc ggatattgcc
      241 gacctcggac ttgcccgcgg cgcggcgctt gtcggccggc tcgatgccgt ggtcgacggc
      301 gttgcgcagc atgtgctcca gcggcgcgac gatgcgctcc agcacggtac ggtccatctc
      361 gccttcggcg ttgccgacat ggaactcgac ctgtttgccc agctccccgg ccacctggcg
      421 gacgatccgg cgcaggcgcg gcaccagacg gtcgaacggc accatgcggg tgcgcatcag
      481 gccttcctgc aactcggtgt tgacccgcgc ctgctgcaac agcagggtct cggcgtcgcg
      541 gttcttcgcc gccagggttt ccttcaggtc gagcaagtcg gaggcggact cgaacagcgc
      601 gcgcgacagt tgctgcagct gcgagtggcg gtccatctcc agcgggtcga agtcttcgta
      661 gccggcacgt tcggcctcgg cctggtagcg gctgaggatt tgcgcctggg tctcggtgtc
      721 gaggcggcgc agctggtcgc gcacccgctc gatggtcgcc tccatctcgc cgagggtgaa
      781 gccgacgtcg ctcacctgct gctcgacgcg accgcggaag atcgaggtct caccggccag
      841 gttgaccagg ccctcgagca gttccgcggg caccttgacc agttcctgcg gcgcgcgctg
      901 ggcggcggcg cgggcggcgg cctcggcggc gcgctggacg aacggcagga ccttgtcctg
      961 ctgcgcctcc tgcgggcggc tgctggccgc gacgatcggc ttggccaggg tgaccggagc
     1021 cggggccgac tcggtcgccg gcggagtctc cgcgggcgcg ctctgcgcct cgctggcgtg
     1081 gccgtcgtcc aggcgcttgc gcagctggtc gagttcctgc tgcaggccct cgaaggcgga
     1141 ctgcacgtcg aggaacaggc tctccggcca gggcgcgccc tgctgctgag cctcggtcag
     1201 gtgctgttcg aggtcgtggc tgagatcgcc caggcgcttc tgtccggcta ggcgtgcacc
     1261 gcccttgagg gtgtgcagga tgcgcagcag ctcgtcgatg gcggagccgt cctcgcggtt
     1321 ggcctcccaa cggccgaccg cggcctccat ggcctcgagc aggtcgtcgc cctcctcgag
     1381 gaagatgtcg aggatctcgt cgttttcgtc gcccgcctcg acctcctcat gcaccggctg
     1441 caggtgcacg ctggtcggca cgctgagctg ggcctcgggg tcggcgcgga agcgcttgat
     1501 ggtctcgatc agcgccaggc cgtccgggat ggcacggttg ccgcgcaccg cctcgagcat
     1561 ctcggagaga cggtcgtggc aggcctgcag cacgccgaac agctcgccat tggccttcag
     1621 gcggccatcg ccgacacctt cgtagagaaa ctccagttca tgggccaggt cgccgatctc
     1681 gcggatctcg gccatgcgcg cgccaccctt gagggtgtgc aggtcgcgct gcagcgactc
     1741 gacttccagg gtgttgtcga catcgcccat ccagcgctgc agggcggcgg aggcgctgtc
     1801 catgatgtcg aagccttcct cgaggaagat ctccaccagc tcggggtcgc ggtcgaccgc
     1861 tggtgccggc gcggccgcga cgggtgcctg gtgctcgggc tcgggctcgg gttcgggctc
     1921 gggctcgggc tcgggctcgg cagtagcttc ggccggcggc gcgggctcat caaccggctc
     1981 cagcgcttcg gcgccgaggg cgggcaggga ctcgtccagg tgccattcgt ccgagctcag
     2041 ctcgggcatg ctctcgggga gctcttcacg cgccggctcg ctgacctcta tatgcagctc
     2101 cggcagctcg tccggctgcg gcgcgacgaa atccacctcg gtcaattcgc ccaggtcgat
     2161 ctccttcgat tcttcgatcg gctccg
//
LOCUS       DATIHC010000251         7589 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7668, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000251 DATIHC010000000
VERSION     DATIHC010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 7589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7589)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7589
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7668"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..442)
                     /locus_tag="VLF16_03940"
     CDS             complement(<1..442)
                     /locus_tag="VLF16_03940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007160442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein"
                     /protein_id="HSX70063.1"
                     /translation="MSFNIGLSGIKAASSDLNITGNNIANAGTVGFKQSRGEFQDLYS
                     ASMLGSGSKQIGSGVLLANVAQLFNQGTIDYTENALDLAINGNGFFVTSNNGAVSYTR
                     AGYFGTDRSGFVVDNNGYRLQGYSVNENGDLQNGVVGDLQISTSN"
     gene            complement(470..1144)
                     /gene="flgD"
                     /locus_tag="VLF16_03945"
     CDS             complement(470..1144)
                     /gene="flgD"
                     /locus_tag="VLF16_03945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003082153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook assembly protein FlgD"
                     /protein_id="HSX70064.1"
                     /translation="MSVENVNGSGSVLDQYQIRDQAGSNELGKDQFLQLLVAQMNNQN
                     PLDPQTNSEFVAQLAQFSTVEGIDNLNTSFENMLASTQSSQALQASSLVGRKVIVTTN
                     KALVDTSEPLKGSVAVTQSTDNLYVNIYDSKGNQVNRISLGAAPAGNIGFTWDGKDAD
                     GKVLPEGVYKFEAQVQVEGKTVAMDTALPANVDSVTLGQNGGEMLLNLAGLGSIPLSK
                     VQVVGQ"
     gene            complement(1161..1610)
                     /gene="flgC"
                     /locus_tag="VLF16_03950"
     CDS             complement(1161..1610)
                     /gene="flgC"
                     /locus_tag="VLF16_03950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HSX70065.1"
                     /translation="MSLSNVFNIAGTGMSAQSTRLNTISSNIANAETVSSSIDQTSRA
                     RHPVFATVYQGSLDGTGDRGSLFADQDESGIGVQVLGIVEDQSSLTPRYEPDHPAADE
                     KGYVYYPNVNVVEEMADMISASRNFQTNADVMNTAKQMIQRVLTLGQ"
     gene            complement(1625..2026)
                     /gene="flgB"
                     /locus_tag="VLF16_03955"
     CDS             complement(1625..2026)
                     /gene="flgB"
                     /locus_tag="VLF16_03955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011169099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009429 - bacterial-type flagellum basal
                     body, proximal rod [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HSX70066.1"
                     /translation="MSISFSNALGIHEQALKFRTQRAEVLANNLVNADTPNFKARDLD
                     FAAVLEAQSEKNKGGFTLEQTDARHIPAEGITEDASLMYRHPFHPSLDQNTVDAQIEQ
                     AKYAENTTQFQASFTLLNSKFKGLIGALRGE"
     gene            complement(2260..3087)
                     /gene="cheR"
                     /locus_tag="VLF16_03960"
     CDS             complement(2260..3087)
                     /gene="cheR"
                     /locus_tag="VLF16_03960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate O-methyltransferase CheR"
                     /protein_id="HSX70067.1"
                     /translation="MSSGNLDFEQFRTFLEKACGILLGSNKQYLVSSRLNKLMEQQGI
                     KTLGELVQKMQAQPRGGLREQVVDAMTTNETLWFRDTYPFEVMKNRVLPELIKANPSQ
                     RLRIWSAACSSGQEPYSLSMTIDEFEKTNLGQLKAGVQIVATDLSPSMLTNCKSGEYD
                     SLAMGRGLSQDRLQRYFDPKGPGRWAVKPAIKSRVEFRPLNLLESYAALGKFDVVFCR
                     NVLIYFSAEVKKDILTRIHATLKPGGYLFLGASEALNGLPDLYQMVQCSPGIIYKVK"
     gene            complement(3132..4064)
                     /locus_tag="VLF16_03965"
     CDS             complement(3132..4064)
                     /locus_tag="VLF16_03965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HSX70068.1"
                     /translation="MAGVLDSVNQRTQLVGQNRLELLLFRLDTPQLYGINVFKVKEVL
                     QCPKLTVMPKSSRVVRGVANIRGGTIPILDLALATGRQALDNIENSFVIITEYNTKVQ
                     GFLVRSVERIVNMNWEEIHPPPKGTGRDHYLTAVTRVDKQLVEIIDVEKILAEVAPMS
                     ETISEGVVDVETQAKAVTQRVLICDDSSVARKQVSRCLESIGVEVVALNDGREAYDYL
                     RKMVEEGKNPSQEFLMLISDIEMPEMDGYTLTAEIRSDPRMQNLHVILHTSLSGVFNQ
                     AMVKKVGADDFLAKFRPDELASRVVERIRVADGG"
     gene            4145..4900
                     /gene="flgA"
                     /locus_tag="VLF16_03970"
     CDS             4145..4900
                     /gene="flgA"
                     /locus_tag="VLF16_03970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012273534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation chaperone
                     FlgA"
                     /protein_id="HSX70069.1"
                     /translation="MNALTTLFRRMMAKRLGLAGVLPALGLFGYSALYAAPMTLPEEL
                     IGATEGFLEFTVEDYLERSEISARHEIEVNPIDPRLRLAACDSDLTQSLESPAQPVGR
                     VTVRVSCEGSTPWTVFVPAQVRVFRPVVVLKTPLKRNSIVSERNIALIEQDVGALRSY
                     ITDPTLVIGRKMTRPVAADQVLIPSQLELAESVYRGDQVVIAARSGGIAVRVQGEALA
                     DGTLGEQISVRNLSSQRVVRARVIGPGQVEVEM"
     gene            5034..5375
                     /gene="flgM"
                     /locus_tag="VLF16_03975"
     CDS             5034..5375
                     /gene="flgM"
                     /locus_tag="VLF16_03975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017679132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HSX70070.1"
                     /translation="MVIDFNRLNNAANTANSGRAGNAQATGRNEAVSTTPPSATQVAD
                     EQASAGKTGESVQLSREAQQLQKVSDKLRDLPTVDKERVAKLKQAIADGSYQVDAKRV
                     ASKLLDFESQR"
     gene            5425..5892
                     /gene="flgN"
                     /locus_tag="VLF16_03980"
     CDS             5425..5892
                     /gene="flgN"
                     /locus_tag="VLF16_03980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014819765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FlgN"
                     /protein_id="HSX70071.1"
                     /translation="MQTNELLQLFTDDIGTAQRLLELIDAEFQAMSERDLPRLEQILA
                     EKIPLLSQLDQHGSARSQMLAAQQLSADRAGLEALASQSENGADLLARSEELSQLLES
                     CRDANLRNGRLIRANQASLKSILGILRGGETPGLYDSRGGAAKIAHQRPLSQA"
     gene            5971..6711
                     /locus_tag="VLF16_03985"
     CDS             5971..6711
                     /locus_tag="VLF16_03985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009313684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar regulator YcgR PilZN domain-containing
                     protein"
                     /protein_id="HSX70072.1"
                     /translation="MSNPFHEDEGPQPPKVLSAPLEIFANLRLLQQSHDPLIVMFKDR
                     NQRFQSYLVEVNRERGVIALDEMVPNDGERFMQNGEPFRVEAFHEGVRIAWECEDPVQ
                     IGELDGARCYWSHMPERVTYHQRRNAFRAPIGQGQLVNIELSGTRLSPALKGQMLDIS
                     ATGCRLRFSGDVTGRLQPGQVYERFTALLPIGSMTTAAELRHAHYVEKVDMTFAGLRF
                     HRMSGLEQRQVERFVYQLQREARRVEQE"
     gene            complement(6801..7037)
                     /locus_tag="VLF16_03990"
     CDS             complement(6801..7037)
                     /locus_tag="VLF16_03990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003226728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin family protein"
                     /protein_id="HSX70073.1"
                     /translation="MPPECQLFGTLGCHLCEVAEALLMPFVEHGLLVELIDIAEREDW
                     VEQYGLRIPVLRRNDTGAELDWPFDADQVVAFLR"
     gene            complement(7081..>7589)
                     /locus_tag="VLF16_03995"
     CDS             complement(7081..>7589)
                     /locus_tag="VLF16_03995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003456322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70074.1"
                     /translation="GRMQIGGWQVDVEGELSDAERTALEGLFKQVQDISSDFYAGDLN
                     GAFDRALQLNMDGSQLASMSLRLTQTSVRQANDAYSSVAQQGGQPAASAVNESLVDYA
                     RGLLDALRTADKVSEDATGTLEQLLDGGFSLDERLDPQSLEKARELNSRLLDGMQGML
                     DKTPAEQA"
BASE COUNT         1438 a         2376 c         2320 g         1455 t
ORIGIN      
        1 ggttggaagt gctgatctgc aagtcaccga ccacgccgtt ctgcaggtca ccgttctcgt
       61 tgacgctgta gccctgcagg cgatatccgt tgttgtcgac cacgaagccg gaccggtcgg
      121 tgccgaagta gccggcacgg gtgtaggaaa ccgcgccgtt gttgctggtg acgaagaagc
      181 cgttgccgtt gatggccagg tccagcgcgt tttcggtgta atcgatggtg ccctggttga
      241 acagctgggc aacgttggcc agcagcacgc cgctgccgat ctgcttgctg ccggagccga
      301 gcatggacgc cgagtagaga tcctggaact cgccgcggga ctgcttgaag ccgacggtac
      361 cggcgttggc gatattgttg ccggtgatgt tcagatcact ggacgctgcc ttgataccac
      421 taagaccgat gttgaacgac atattggaat actcctgagt ggcaaccgat tactggccga
      481 cgacctgaac tttggaaaga ggaatgctgc cgaggccggc gagattcagc agcatctcgc
      541 cgccgttctg accgagggtg acgctgtcga cattggccgg cagcgcggtg tccatggcca
      601 cggtcttgcc ctcgacctgc acctgcgcct cgaacttgta gacaccctcc ggcaatacct
      661 tgccgtcggc gtccttgccg tcccaggtga agccgatgtt gccggccggc gcggcgccga
      721 ggctgatgcg gttcacctgg ttgcccttgc tgtcgtagat gttcacgtac aggttgtcgg
      781 tggactgggt cacggccacg ctgcccttga ggggctcgct ggtgtcgacc agcgccttgt
      841 tggtggtgac gatgaccttg cgcccgacca gcgacgaggc ctgcagcgcc tgggacgact
      901 gcgtgctggc gagcatgttc tcgaagctgg tgttcaggtt gtcgatgcct tcgacggtac
      961 tgaactgggc caactgggcg acgaactcgc tgttggtctg tggatcgagg gggttctggt
     1021 tgttcatctg ggccaccagc agttgcagga actgatcctt gcccagctcg ttgctgccgg
     1081 cctggtcacg aatctggtac tggtcgagga ccgaaccgct tccattaacg ttttcgacgc
     1141 tcatctcgtt ccctctcgcc ttactggccc agtgtcagca cgcgctgaat catctgcttg
     1201 gcggtgttca tcacgtccgc gttggtctgg aaattgcggc tggcggagat catgtcggcc
     1261 atctcctcca ccacgttgac gttggggtag tacacgtagc ccttctcgtc cgccgccgga
     1321 tggtccggct cgtagcgcgg cgtcagggag ctctggtcct cgacgatgcc gagcacctgc
     1381 acgccgatgc ccgattcgtc ctggtcggcg aacagcgagc cacggtcgcc ggtgccatcc
     1441 agggagccct ggtacacggt ggcgaacacc ggatggcgcg cgcgggaggt ctggtcgatg
     1501 ctcgaggaga ccgtctcggc gttggcgatg ttgctggaaa tggtgttcag ccgagtgctc
     1561 tgggcgctca tgccggtgcc ggcgatgttg aagacgttgg agagagacat gacttcgtgc
     1621 tcctttattc gccgcgcagg gcgccgatca gacctttgaa cttgctgttg agcagggtga
     1681 agctggcctg gaactgcgtg gtgttctcgg cgtacttggc ctgctcgatc tgggcatcga
     1741 cagtgttctg gtcaagggac ggatggaagg ggtggcgata catcagcgag gcgtcctcgg
     1801 tgatgccttc ggccgggata tgacgagcat cggtctgctc cagcgtaaag ccgcccttgt
     1861 tcttctcgct ctgggcttcc agcacggcgg cgaaatccag atcacgcgcc ttgaagtttg
     1921 gcgtgtcggc attgaccaga ttgttggcca gcacctctgc acgctgggtg cggaacttga
     1981 gggcctgttc gtggatgccg agggcgttcg aaaaactgat gctcatgagc ttggaccttg
     2041 ccgtttggac ggaccgatgt tgccgtgcca gtgaattagc aagcgccatg ccagaataat
     2101 ttttcgttat ttatcagaca cctgaatgat ttccggcacg agaaagagcg gcaagcggca
     2161 agagttttcc gccccgcagg cccgagcggc aatgccgact tgccgcccgc aaacgaaaac
     2221 gggaggccgt agcctcccgt ctcgtacaac cggtgagaat cacttcacct tgtagatgat
     2281 ccccgggctg cactggacca tctgatacag gtccggcagg ccgttgagcg cctcggaagc
     2341 accgaggaac aggtagccgc ccggcttcag cgtcgcgtgg atgcgggtga ggatgtcctt
     2401 cttcacctcg gcggagaagt agatcagcac gttgcggcag aacaccacgt cgaacttgcc
     2461 cagcgccgca tagctttcca gcaggttcag cggacggaat tccacgcggc tcttgatcgc
     2521 cggcttcacc gcccagcgcc ccgggccctt ggggtcgaag tagcgctgca gccgatcctg
     2581 cgacaggccc cggcccatgg ccaggctgtc gtactcgccg gacttgcagt tcgtcagcat
     2641 cgacggcgac agatcggtgg caacgatctg cacaccggcc ttgagctggc ccaggttggt
     2701 cttctcgaac tcgtcgatgg tcatcgacag cgaatacggc tcctgaccgg acgagcaggc
     2761 cgccgaccag atgcgcagcc gctggctggg gttggccttg atcagctccg gcaatacccg
     2821 gttcttcatc acctcgaagg gataggtgtc gcgaaaccac agcgtctcgt tggtggtcat
     2881 ggcatcgacc acctgttcgc gcaagccacc gcgcggctga gcctgcattt tctgcacgag
     2941 ctcgccgagg gtcttgatcc cctgctgctc catcagcttg ttgaggcggc tggataccag
     3001 gtactgcttg ttgctcccca gcagaatgcc gcaagccttt tccaggaagg tccggaactg
     3061 ctcgaaatcc aaattgcccg aagacactaa tggcgcctca ccaaacatag tcctgaccag
     3121 gggcgccgcc cctagcctcc atcggccacc cggatgcgtt caaccacgcg ggaagccagt
     3181 tcgtccggac ggaacttcgc gaggaagtcg tccgcaccga ccttcttaac catcgcctgg
     3241 ttgaacacgc cggagagcga agtatgcaga atcacatgca gattctgcat cctcggatcg
     3301 gagcgaatct ccgccgtcag ggtgtagccg tccatctccg gcatctcgat gtcggagatc
     3361 agcatgagga attcctgaga ggggttcttg ccctcctcca ccatcttgcg cagatagtcg
     3421 taggcctcgc ggccatcgtt gagcgccacc acctcgacgc cgatgctctc caggcagcgc
     3481 gagacctgct tgcgcgccac cgaggaatcg tcgcagatca acacccgctg ggtgactgcc
     3541 ttggcctggg tctcgacgtc caccacgccc tcggagatgg tttccgacat cggcgcgacc
     3601 tcggcgagga tcttctccac gtcgatgatt tcgaccaatt gcttgtccac ccgcgtcacc
     3661 gccgtcaggt agtggtcgcg accggtgccc ttgggtggcg gatggatctc ttcccagttc
     3721 atgttgacga tccgctcgac cgaacgcacc aggaaaccct gcaccttggt gttgtattcg
     3781 gtgatgatca cgaagctgtt ttcgatgttg tccagcgcct gcctaccggt ggccagggcc
     3841 agatcgagga tgggtatggt gcccccgcga atgttcgcca cgccgcgcac cacgcggctg
     3901 gacttgggca tcacggtgag tttggggcac tgcagcacct ccttcacctt gaacacgttg
     3961 atgccgtaca gctgtggggt atccagccgg aacagcaaaa gctccaggcg gttctgcccg
     4021 accagctgag tacgctggtt aaccgagtcc aatactccgg ccatgcccag actccttttc
     4081 gttcatttcg ccgcgcttcc tgctgaagcc tagcaggcgg cacaagcctt gcttcgtgag
     4141 ggacatgaac gcactcacga cacttttccg acgcatgatg gcaaaacgcc taggtctcgc
     4201 cggtgtttta cccgctttgg gcctgttcgg ctacagcgcg ctgtacgccg cgccaatgac
     4261 cctgcccgag gagcttatcg gcgccaccga gggctttctt gaattcaccg tagaagacta
     4321 tctggagcgt agcgaaatct ccgcgcgcca tgaaatcgag gtcaatccga tcgacccgcg
     4381 cctacgtctc gccgcctgcg acagcgattt gacacagagc ctggagagtc cggctcagcc
     4441 ggtcggcagg gtcacggtgc gtgtcagctg cgaaggcagt acgccttgga cagtctttgt
     4501 accagcgcaa gtgcgtgtct tccgaccggt ggtcgtgctc aagacgccgc tcaagcgcaa
     4561 cagcatcgtc agcgagcgga acattgctct gatcgaacag gacgtagggg ctctgcgcag
     4621 ctacatcacc gatccgaccc tggtcatcgg cagaaaaatg acgcgaccgg tcgcggcgga
     4681 tcaggtactg ataccttcgc aactggaact ggcggagagt gtgtatcgcg gcgaccaggt
     4741 ggtgatcgcc gcgcgaagcg gcggcatcgc agtacgcgtt cagggggaag cgctggcgga
     4801 cggcaccctc ggcgagcaga tcagcgtacg caaccttagc tcgcaacggg ttgtcagagc
     4861 tcgtgtgata gggcctggac aggtcgaagt ggagatgtag gcacgattct tgtagcgcaa
     4921 ctccagagcg attttctaca ctgttgaacg aaacacactt tcgcgcccta aagttacgac
     4981 ggaacctgcc gacaccttag tcaagcgtcc agataccgtc agaggttcac aacatggtta
     5041 tcgacttcaa ccggctgaac aatgccgcca ataccgccaa cagcggtcgt gcaggcaacg
     5101 cccaggccac cggccgtaac gaggccgtca gcaccacgcc gcccagcgcg acccaggtcg
     5161 ccgacgagca ggccagtgcc ggcaaaacgg gcgaatccgt acagctcagc cgcgaagccc
     5221 aacagttgca gaaagtgagc gacaagctgc gtgacctgcc gaccgtggat aaagagcgcg
     5281 tcgccaaact gaagcaggcc attgccgacg gcagctacca agtcgatgcc aagcgcgtcg
     5341 ccagcaagct gctcgatttc gaatcccagc gctagtccca gggctgcgct ggggatattg
     5401 gacgcccgat ccccagagcc cgcgatgcaa accaacgaac tgctgcaact gttcacagac
     5461 gatatcggca cggcccagcg cctgcttgag ctgatcgacg ccgaattcca ggccatgagc
     5521 gagcgcgact tgccgcgcct ggaacagatc ctcgccgaaa agatccccct cctcagccaa
     5581 ctcgaccagc acggtagcgc acgcagtcag atgctcgccg ctcagcagct gagcgccgat
     5641 cgcgccggcc tggaagcgct ggccagccag agcgaaaacg gtgccgacct tctggcgcgc
     5701 agcgaggagt tgagccagct cctggaaagc tgccgcgacg ccaatctgcg caacggtcgc
     5761 ttgatccggg ccaaccaggc ctccctcaag agcattctcg gcattctccg cggcggagag
     5821 acaccagggc tctatgacag ccgcggcggc gccgctaaaa tcgcgcacca acgcccgctc
     5881 agccaagcct gagccaataa caacaagcac agggacatac cggcgatatg ccagtatgct
     5941 agcgctgtag tacctggaga atgctggatc gtgtccaatc catttcacga agacgaaggc
     6001 cctcagccgc ccaaggtgct cagtgcgcct ctggagatct tcgccaacct gcgcctgctg
     6061 cagcagagcc atgacccgct gatcgtgatg ttcaaggacc gcaaccagcg ctttcagagc
     6121 tatctggtcg aggtcaatcg ggagcgtggc gtcatcgcgc tggatgaaat ggtgcccaac
     6181 gatggcgagc gcttcatgca gaacggcgaa ccgttccgcg tggaggcttt ccacgaaggc
     6241 gtacgcatcg cctgggaatg cgaggacccg gttcagatcg gcgaactgga tggcgcgcgc
     6301 tgctactgga gccatatgcc ggagcgggtg acctaccacc agcgccgcaa tgccttccgc
     6361 gcccccatcg gccagggcca gctggtcaat atcgaactct ctggaacccg cctgagcccc
     6421 gctctcaaag gccagatgct ggacatctcc gccactggct gccgcctacg cttctccggc
     6481 gacgtcaccg ggcgcctgca gcccgggcag gtctacgagc gctttaccgc cctgctgccc
     6541 atcggctcga tgaccaccgc cgcagagttg cgccatgcgc attatgtgga gaaggtagac
     6601 atgaccttcg ccgggctgcg cttccaccgc atgagcggcc tggaacagcg tcaggtcgaa
     6661 cgcttcgttt accagctgca acgtgaggca cggcgcgtcg agcaggaata gacagccgcg
     6721 ttgaacgaaa aggccgcctt tgaggcggcc ttgttgtata gggcgtagaa cgcacgggct
     6781 tgtttgccgg ccttcgcgac tcagcgcagg aaggcgacca cctggtcggc gtcgaacggc
     6841 cagtcgagtt cggcaccggt atcgttacgg cgcagcacgg gaatccgcag gccgtattgt
     6901 tcgacccagt cctcgcgctc ggcgatgtcg atcagttcga ccagcaggcc gtgttcgacg
     6961 aaaggcatca gcaacgcctc ggccacctca cagagatgac agccgagggt gccgaagagt
     7021 tggcattcag ggggcatcgg gcgtctccga actcaatcag aaacgcagtc taccactagc
     7081 tcaggcctgc tccgccggcg tcttgtcgag catgccctgc atgccgtcga gcaggcggct
     7141 attgagctcg cgcgccttct ccagcgactg cgggtcaagg cgctcgtcga ggctgaaacc
     7201 gccatccagc agctgctcca gcgtgccggt cgcgtcctcc gagaccttgt cggcggtgcg
     7261 cagcgcatcg agcaggccac gcgcgtaatc caccagggat tcgttcaccg cgctcgctgc
     7321 cggctgtcca ccctgctggg caacggagct gtaggcgtcg ttggcctggc gcacgctggt
     7381 ctgggtcaac cgcagcgaca tggacgccag ttgcgagcca tccatattga gctgcagggc
     7441 acggtcgaag gcgccattga ggtcaccggc gtaaaagtcg ctggagatgt cctgcacctg
     7501 cttgaacagt ccttccagcg cagtacgctc ggcgtcgctc agctcgccct cgacatccac
     7561 ctgccagccg ccgatctgca tacggcccg
//
LOCUS       DATIHC010000252         4113 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_16657, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000252 DATIHC010000000
VERSION     DATIHC010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4113
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16657"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(325..705)
                     /gene="panD"
                     /locus_tag="VLF16_04000"
     CDS             complement(325..705)
                     /gene="panD"
                     /locus_tag="VLF16_04000"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004068 - aspartate 1-decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HSX70075.1"
                     /translation="MHAIMLKAKLHRAIVTHAVLDYEGSCAIDGEWLDLSGIREYEQI
                     QIYNVDNGERFTTYAIRGEEGSKIISVNGAAAHKAGVGHRVIICAYAHYSEAELANFQ
                     PRVLYMGADGELSHTSNAIPVQVA"
     gene            complement(786..1634)
                     /gene="panC"
                     /locus_tag="VLF16_04005"
     CDS             complement(786..1634)
                     /gene="panC"
                     /locus_tag="VLF16_04005"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014340243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HSX70076.1"
                     /translation="MNSVKTVRELRAAVARARGEGKRIAFVPTMGNLHEGHVALVEKA
                     GQRADFVVASIFVNPLQFGPNEDLAKYPRTLAADQDKLVAAGCHLLFHPDVDEMYPHG
                     QAGQTRVGVPGVSEGLCGASRPGHFEGVATVVTKLFNMVQPDLAVFGEKDFQQLAVIR
                     TLVRDLNMPIQIVGEPTVRAEDGLALSSRNGYLNTEQRAQAPALYRTLNELAEAIRGG
                     NRDFAALVANGTASLAAAGFRPDYLEIREASSLRLAQADDRQLVILGAAFMGNTRLID
                     NLAFEL"
     gene            complement(1631..2431)
                     /gene="panB"
                     /locus_tag="VLF16_04010"
     CDS             complement(1631..2431)
                     /gene="panB"
                     /locus_tag="VLF16_04010"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HSX70077.1"
                     /translation="MPDVTVSTLLGLKQKGEKIAMLTAYDATFAQAACQAGVEVLLVG
                     DSLGMVLQGHDSTLPVSLADMAYHTAAVKRGNQGALILADLPFMAYSTLEQTFASSAA
                     LMQAGAHMIKLEGATWLAEPIRQLAERGVPVCAHLGLTPQAVNVFGGYKVQGRGDAAA
                     RQLRADAMALEQAGAAMLLLECVPSELAAEISQSVKIPVIGIGAGSATDGQVLVMHDM
                     LGLSLTGRAPKFVKNFMEGQPSVQAAFAAYVRAVKDVSFPAEEHGFSA"
     gene            complement(2607..3089)
                     /gene="folK"
                     /locus_tag="VLF16_04015"
     CDS             complement(2607..3089)
                     /gene="folK"
                     /locus_tag="VLF16_04015"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003298249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HSX70078.1"
                     /translation="MERVYIGLGSNLAEPRQQLEAALAALAELPDSRLAATSSFYASD
                     PLGPPDQPRYVNAVAALDTGLEPLQLLDALQRIEQEQGRVRKAERWGPRTLDLDILLF
                     GERLLAEERLTVPHYHLHARAFVLYPLAEIAPADLALPDGRSLQTLLAVCPYEGLERL
                     "
     gene            complement(3090..>4113)
                     /gene="pcnB"
                     /locus_tag="VLF16_04020"
     CDS             complement(3090..>4113)
                     /gene="pcnB"
                     /locus_tag="VLF16_04020"
                     /EC_number="2.7.7.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012077480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:1990817 - poly(A) RNA polymerase activity
                     [Evidence IEA];
                     GO_process: GO:0006378 - mRNA polyadenylation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HSX70079.1"
                     /translation="HLAARHESGRILRDNVYGDQESDAQRRDFTINALYFDVTGERVL
                     DYAHGVHDIRNRLIRLIGDPEQRYLEDPVRMLRAVRFAAKLGFEIEKHSAAPIRRLAP
                     MLRDIPAARLFDEVLKLFLAGRAERTFELLVEYDLFAPLFPASAKALERNPEYAGDLI
                     RQALANTDERIALGKPVTPAFLFAALLWPALPARALQLQDRGMPPIPAMQEAAHELIL
                     EQCRRIAVPKRFTIPIREIWDMQERLPRRHGKRADLLLENPRFRAGYDFLLLREEAGE
                     QTDGLGDWWTDYQDASDSERRAMIRDLSSRPDDGGGEGAPVARKRRRGGRNRRRGPRS
                     DAPAGE"
BASE COUNT          599 a         1278 c         1536 g          700 t
ORIGIN      
        1 ctagtgctca tggagaagcg ctcgaagcgc tgggcgtcgg cgccgaaggc ttcgcgcatg
       61 ctgaagcccg ccatgccctg gcggtgctgg agcagggcct gccaggcggg cagggtggtg
      121 acgtcgtgcg ggtgctggta atacgccatg ggcggcaatt tccttttata tggcttgtac
      181 ggcgtttcgg gctgaccggg agcggggccg ggtgcgctgc tgttcccgtc tcggcacgct
      241 acggcagggg ccgaatcgcg gatggcgcac caatgaaaag cccggaaagg ttccgggctt
      301 ggagtgtagc ggcagccgac tcgttcaggc gacttgtacc gggatcgcgt tgctggtgtg
      361 gctcagctcg ccgtcggcgc ccatatagag aacgcgcggc tggaagttgg ccagctcggc
      421 ctcgctgtaa tgggcatagg cgcagatgat cacgcgatgg ccgacgccgg ccttgtgtgc
      481 ggcggcgccg ttgaccgaga tgatcttcga gccttcctcg ccgcggatgg cgtaggtggt
      541 gaagcgctcg ccgttgtcca cgttgtagat ctggatctgc tcgtattcgc ggatgccgga
      601 caggtccagc cactcgccgt cgatggcgca ggagccttca tagtcgagca ccgcatgggt
      661 gacgatggcg cggtgcagct tggccttgag catgatggcg tgcatgacta tttccctctc
      721 ggaatacggc ggcggcagag tgtgcccgaa gccccggagg gcatcaaggc cagttgtcgc
      781 gtgggttaca gctcgaaagc gaggttgtcg atcaggcgcg tgttgcccat gaaggcagcg
      841 cccaggatca ccagttgacg gtcgtcggcc tgggcgagac gcaggctgct cgcctcgcgg
      901 atctccaggt agtccgggcg gaagccggcc gccgcgaggc tggccgtgcc gtttgccacc
      961 agcgcggcga aatcgcgatt gccgccacgg atcgcctcgg ccagctcgtt cagggtgcgg
     1021 tacagggccg gcgcctgggc gcgttgttcg gtgttgaggt agccgttgcg cgaggacagg
     1081 gccaggccgt cctcggcgcg cacggtcggc tcgccgacga tctggatcgg catgttcagg
     1141 tcgcgcacca gggtgcggat caccgccagc tgctggaagt ccttctcgcc gaacacggcg
     1201 agatccggct ggaccatgtt gaacagcttg gtcaccacgg tggcgacgcc ctcgaagtgg
     1261 ccgggacggc tggcgccgca caggccctcg gagacgccgg gcacgccgac gcgggtctgg
     1321 ccggcctggc cgtgggggta catctcatcg acatccgggt ggaacagcag atggcaaccg
     1381 gcggcgacca gcttgtcctg gtccgcggcc agggtacgcg ggtacttggc caggtcttcg
     1441 ttggggccga actgcagcgg attgacgaag atgctggcga ccacgaagtc ggcgcgctgg
     1501 ccggccttct ccaccagggc gacgtggccc tcgtgcaggt tgcccatggt cggcacgaag
     1561 gcgatgcgct tgccctcgcc acgcgcgcgc gccacggcgg cgcgcagttc ccggacggtc
     1621 ttgacgctgt tcatgcggag aatccgtgtt cctcggcggg gaagctgacg tccttcaccg
     1681 cgcgtacata agcggcgaag gcggcctgga cgctcggctg gccttccatg aagttcttca
     1741 cgaacttcgg ggcgcggccg gtcagcgaca ggccgagcat gtcgtgcatc accagtacct
     1801 ggccatcggt ggcgctaccc gcgccaatac cgatcaccgg gatcttcacc gactgggaga
     1861 tctcggcggc cagctcgctg gggacgcatt cgagcaacag catggcggcg ccggcctgct
     1921 ccagggccat ggcgtcggcg cgcagctggc gcgcggcggc gtcgccgcgg ccctgcacct
     1981 tgtaaccgcc gaacacgttg accgcctgcg gcgtcaggcc caggtgggcg cagaccggca
     2041 cgccgcgctc ggccagctgg cggatcggct cggccagcca ggtcgcgccc tccagcttga
     2101 tcatgtgggc gccggcctgc atcagcgcgg cgctgctggc gaaggtctgt tcgagggtgg
     2161 agtaagccat gaacggcagg tcggcgagga tcagcgcgcc ctggttgccg cgcttcacgg
     2221 cggcggtgtg ataggccatg tcggccagcg acaccggcag ggtgctgtcg tggccctgca
     2281 ggaccatgcc cagggagtct cccaccagca gcacttccac accggcctgg caggctgcct
     2341 gggcgaaggt ggcgtcgtag gcggtcagca tggcgatctt ctcgcccttc tgcttcaggc
     2401 ccagcagggt gcttacggtt acatcaggca tgggagagtc ctcatcagcg ggccggatgg
     2461 cggcgcttgt ggcgcctgct ctcggcctct tgggcggggc tgtctgcacc gcctcggggc
     2521 aacgggacgc ctatagtccc gatggggggg cgtgaagtca atcacgggtg ttaccgctct
     2581 gttacgacgt tacccgttgc gcctggctag aggcgttcca ggccctcata ggggcagacg
     2641 gcgagcaggg tttgcaggct gcggccatcg ggcagtgcca ggtcggcggg ggcgatttcg
     2701 gccagcgggt agagcacgaa tgcgcgggcg tgcaggtgat agtgcggcac ggtcagacgt
     2761 tcctcggcga gcagtcgttc gccgaacagc aggatgtcca gatccaatgt gcgtgggccc
     2821 cagcgctcgg ccttgcgtac gcggccctgt tcctgctcga tgcgctgcag ggcatcgagc
     2881 agttgcagcg gctccagccc cgtgtccaat gccgccacgg cgttgacgta gcgcggctga
     2941 tccggcgggc cgagcggatc gctggcatag aaagaggagg tggcggccag gcggctgtcg
     3001 ggcagctcgg cgagggcggc gagggcggcc tcgagctgct ggcgcggctc ggccaggttg
     3061 ctgccgaggc cgatgtagac ccgctccact tattcgccgg ccggtgcgtc gctgcgcgga
     3121 ccgcgacggc gattacgccc accgcgacgg cgcttgcgtg ctaccggtgc gccttcgcca
     3181 ccgccgtcgt ccgggcggct gctgaggtcg cggatcatgg cgcggcgctc gctgtcgctg
     3241 gcgtcctggt aatcggtcca ccagtcaccg aggccatcgg tctgctcgcc ggcctcttca
     3301 cgcagcagga ggaagtcgta gccggcgcgg aaacgcgggt tttccagcaa caggtcggcg
     3361 cgcttgccgt ggcggcgcgg taggcgttcc tgcatgtccc agatctcgcg gatcggaatg
     3421 gtgaaacgct tgggcacggc gatgcggcgg cactgctcga ggatcagctc gtgggcggct
     3481 tcctgcatgg ccgggatcgg tggcatgccg cggtcctgca gctgcagcgc gcgagccggc
     3541 aatgccggcc agagcagggc ggcgaagagg aaggcgggcg tgaccggctt gcccagggcg
     3601 atgcgctcgt cggtattggc cagggcctgg cgaatcaggt cgccggcata ttcggggttg
     3661 cgctccagcg ccttggcgct ggcggggaac agcggggcga acaggtcgta ctcgaccagc
     3721 agctcgaagg tgcgttcggc gcggccggcg aggaacagct tgagcacctc gtcgaacagg
     3781 cgcgcggccg ggatgtcgcg cagcatcggc gccaggcggc ggatcggcgc ggcgctgtgt
     3841 ttctcgatct cgaagccgag cttggcggcg aagcgcacgg cacgcagcat gcgcaccggg
     3901 tcttccaggt agcgctgctc ggggtcgccg atcaggcgga tcaggcgatt acggatgtcg
     3961 tggacgccat gggcgtagtc cagcacccgt tcgccggtga cgtcgaagta cagggcattg
     4021 atggtgaagt cgcggcgctg ggcgtcgctt tcctggtcgc cgtagacgtt gtcgcggagg
     4081 atgcgcccgc tctcgtggcg ggcggccagg tgg
//
LOCUS       DATIHC010000253         1746 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42710, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000253 DATIHC010000000
VERSION     DATIHC010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1746)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1746)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1746
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42710"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            16..930
                     /locus_tag="VLF16_04025"
     CDS             16..930
                     /locus_tag="VLF16_04025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011335652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008677 - 2-dehydropantoate 2-reductase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative 2-dehydropantoate 2-reductase"
                     /protein_id="HSX70080.1"
                     /translation="MSTWHVLGAGSLGGLWAARLARAGLPVRLILRDQARLGQYRAAG
                     GLTLVEDGLASLHPIPAETPHTDIPIRRLLLACKAYDAEEAAAELAPRLAPGAEIVLL
                     QNGLGSQEAVTARLPRAHCVCASSTEGAFRDGAFRVVYAGRGHTWLGVPGERRAPTWL
                     DDLSAAGIPHAWTADILAKLWRKLALNCAINPLTVLHDCRNGGLRDWPDEVAGLCDEL
                     ATLLRAAGQDEAATDLHQDVLRVIDGTAANYSSMHQDVANGRRTEIGYLLGHASAEAE
                     RLGLHLPRLEHLLQRLREYLTGRGLPVT"
     gene            1024..>1746
                     /locus_tag="VLF16_04030"
     CDS             1024..>1746
                     /locus_tag="VLF16_04030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003459364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HSX70081.1"
                     /translation="MLAALLVLLATVMLVANLAFISAAYWISQESVAPQALQAIGKLI
                     AAPELSRHALSSPEAAREVLQRLDSYTPLRAAALYDSGGRRLADLQLGEPLRLPAYGG
                     DLEHWRQGEFRSTRVIELPQPGSAPGRLLLVASSELPGAFYTGTLTASGVILAISVVL
                     WALIARQVRRLITRPIRRLEELSRQVTREENYSLRAARGNRDEIGSLADAFNTMLGRM
                     EAREQQLKRARDDAESAFSQAQS"
BASE COUNT          247 a          688 c          578 g          233 t
ORIGIN      
        1 cctgccgctg ccgcagtgag cacctggcac gtcctcggcg ccggcagcct gggcgggctg
       61 tgggcggccc gtctggcccg ggccgggctg ccggtacgtc tgatcctgcg tgaccaggcc
      121 cgcctcggcc agtaccgcgc cgccggtggt ctgaccctgg tcgaagatgg cctggccagc
      181 ctgcatccca ttcccgcgga aaccccgcac accgacattc ccatccgccg cctgctgctc
      241 gcctgcaagg cctacgacgc cgaggaggcc gccgccgagc tggccccgcg cctggccccc
      301 ggcgccgaga tcgtcctctt gcagaacggc ctcggcagcc aggaggcggt gaccgcgcgc
      361 ctgccgcggg cgcactgcgt gtgcgcctcg agcaccgagg gcgcctttcg cgacggcgcc
      421 tttcgcgtgg tatacgccgg ccgcggccac acctggctcg gcgtcccggg cgaacgccgg
      481 gcgccgacgt ggctggacga cctgagcgcc gcgggcattc cccacgcgtg gaccgccgac
      541 atcctcgcca agctgtggcg caagctggcg ctgaactgcg cgatcaaccc gctgaccgtg
      601 ctgcacgatt gccgcaacgg cggcctgcgc gactggccgg acgaggtcgc cggcctgtgc
      661 gacgaactcg ccaccctgct gcgcgccgcc ggccaggatg aggccgcgac ggacctgcac
      721 caagacgtgc tgcgggtgat cgacggcacc gccgccaact actcttccat gcaccaggac
      781 gtggccaacg gccggcgcac ggagataggc tacctgctcg gccacgcgtc ggccgaggcc
      841 gagcgcctcg ggctgcatct gccgcgcctg gagcacctcc tgcagcgcct gcgcgaatac
      901 ctcacgggtc gcggattgcc cgtgacctga agcggcgcta ccctgcccct cccacacgaa
      961 gcggaagccg cgcccttgac ctctctgcgt caacgcctcg acaacctgcc ggtcggccgc
     1021 aagatgctcg ccgcgctgct ggtgctgttg gccaccgtga tgctggtggc caacctggcc
     1081 ttcatcagcg ccgcctactg gatctcccag gagagcgtgg cgccgcaggc cctgcaggcc
     1141 atcggcaagc tgatcgccgc gccagaactg agccgccacg ccctgtcctc gcccgaggcc
     1201 gcgcgcgagg tgctgcaacg cctggacagc tacaccccgc tgcgcgccgc ggcgctctac
     1261 gacagcggcg gccggcgcct ggccgaccta cagctgggcg aacccctgcg cctgccggcc
     1321 tacggcggcg atctggaaca ctggcgccag ggcgaattcc gctccacccg ggtgatcgaa
     1381 ctgccgcagc cgggcagcgc gcccggacgc ctgctgctgg tcgcctccag cgagctgccc
     1441 ggcgcgttct acaccggcac gctgaccgcc agcggcgtga tcctggccat cagcgtggtg
     1501 ctctgggcgc tgatcgcgcg ccaggtgcgc cgtctgatca cccgaccgat ccgccgtctg
     1561 gaagagctct cgcgccaggt gacccgcgag gaaaactact cgctgcgcgc cgcccgcggc
     1621 aaccgcgacg agatcggcag cctggccgac gccttcaaca ccatgctcgg ccgcatggag
     1681 gctcgcgaac agcagctcaa acgcgcccgc gacgatgccg agagcgcctt ctcccaggcc
     1741 cagagc
//
LOCUS       DATIHC010000254         4468 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28722, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000254 DATIHC010000000
VERSION     DATIHC010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4468
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28722"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(79..1002)
                     /locus_tag="VLF16_04035"
     CDS             complement(79..1002)
                     /locus_tag="VLF16_04035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010225390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HSX70082.1"
                     /translation="MKAPLEQAVDWYVRLHDSASGEQTRAAWHLWLTADTRHAEAWAR
                     VEQLQQRLDRAPAGLAGRTLEQARQSRRTALKGLAALAGVGLLGWQGYEVSPLSADYA
                     TRVGERRSLTLADGSRLELDTDTRIDLRFDDRHRQIRLLQGNLLVEAASDSRPLSVLS
                     AEGQVQAAAARFAVRQFDGRTQVQVERQAVQISPRLSPTPAVSLPAGQCLSFNAHACE
                     VAQPAPADASAWTRGMLVALDWRLDALLAELSRYRHGYLGCSREVAGLRLSGAFAVDD
                     FDAVLHLLQASLPLRVRQVTPLWVRLERRPA"
     gene            complement(999..1505)
                     /locus_tag="VLF16_04040"
     CDS             complement(999..1505)
                     /locus_tag="VLF16_04040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011533731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSX70083.1"
                     /translation="MSTEALDGAQLDALYRAHHGWLRGWLRQRLNNSADAADLAQDTF
                     VRVLLARTAGTLKEPRHYLATVARGLVIDLYRRRSLEQAYLDVLAGQPERYEPSTEVR
                     AEIIDSLLAIDRLLDGLGARTRAIFLAVQLDGLSYEKAAMRVGVSVTTVRKHLAQALL
                     HCLELEAA"
     gene            complement(1825..2025)
                     /locus_tag="VLF16_04045"
     CDS             complement(1825..2025)
                     /locus_tag="VLF16_04045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70084.1"
                     /translation="MAGESDPLYDIDSYFVVGANADYQLTEELSLSLLVNNVLDEEYR
                     VSNYSYSYGAPLNASISVRAQF"
     gene            complement(2041..4254)
                     /locus_tag="VLF16_04050"
     CDS             complement(2041..4254)
                     /locus_tag="VLF16_04050"
                     /inference="COORDINATES: protein motif:HMM:TIGR01783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0015343 - siderophore-iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HSX70085.1"
                     /translation="MFEPWPRTLALSLSLACASTLAVAEQRLIRFDLPAASLAQSLNA
                     IARLSGQVVSLDPALVQGKQAPAISGEMTAEQALQQALQGSGLELRSTESGTYSVQSK
                     ADGDGALELGTTTINANGLGGVTEGTGSLTTAGPVTAATGLNLSLRETPQSVTVITRE
                     RMEQQNLNSLAEVAEQVPGVHFNSTGTPIGGRTWMYSRGFIVNSYQVDGVNVPWETMS
                     ESSQYGHGALDTSIYDSVTVVRGSTGLMTGAGEPSALMALTRKKPTSELQTTLEATTG
                     SWDHYRGMADVGGPLNESGTLRARVVGAYDEGDTWVDRYSNERSILYGVIEADLSLDT
                     LLTVTLEHGTADSKGAPWAADYGAFFYFADGETPIPHDESTSIVPDWTDLNSDRSYLT
                     TTLAHQFSEDWKGRLSYGYGKFNSKMHRGMISWLIPEDGSPAVGRVLSLDYSYDTHIV
                     DAQLDGKYQLFGREHELVTGFNFYRNDQQADTAFLSNAYSDFATWNNGGLHFNEPNWN
                     DLDGSEDDCPFDSKIEQEGAFVATRLHPTDRLSVILGGRMTTWKSHSKDRATAYHDAY
                     VWDDRVYSSELTPYAGVVLDLTQNLSAYASYTQIFNPQDVKDADGRLLDPEEGDTYEV
                     GLKGAWFDDRLNTSIAVFESKRDNLAVEDGINVTPDGDQAYRAKSDTQGKGWEFEVAG
                     ELTPRWQVQAGYTYFRNEDHDGNVLDATQPEQLFKLYTSYQPALVPKLTLGTSVR"
     gene            complement(4355..>4468)
                     /locus_tag="VLF16_04055"
     CDS             complement(4355..>4468)
                     /locus_tag="VLF16_04055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016779583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron dicitrate transport regulator FecR"
                     /protein_id="HSX70086.1"
                     /translation="GVFPLDDTPRSLTALAETLPIRVDHYGPWLTLVGPAN"
BASE COUNT          777 a         1348 c         1494 g          849 t
ORIGIN      
        1 aaagtggacg ttgcgggtgg agccgaagca gccgcaaaaa tctgtcaccc ctgaatgaaa
       61 taattttgca atcgcccgtc aggccggacg ccgctccagg cgtacccaca gcggcgtgac
      121 ctggcgcacc cgcagcggca acgaggcctg cagcaggtgc agcaccgcgt cgaagtcgtc
      181 cacggcaaac gcgccagaca ggcgcaggcc ggccacttcg cggctgcagc ccaggtagcc
      241 gtggcgatag cgcgacagct cggcgagcag cgcgtccaga cgccagtcca gcgccaccag
      301 catgccgcgg gtccaggcgc tggcatcggc tggcgccggc tgggcaacct cacaggcatg
      361 ggcgttaaaa cttaggcact ggccggctgg caggctcacc gccggggttg gcgacaggcg
      421 cgggctgatc tgcacggcct ggcgctcgac ctgcacctgg gtgcggccat cgaactggcg
      481 cacggcgaag cgtgcagcgg cggcctgcac ctggccttcc gcgctgagca cactgagcgg
      541 gcggctgtcg ctggccgcct ccaccagcag attgccttgc agcaggcgga tttgccgatg
      601 gcggtcgtcg aaacgcaggt cgatgcgggt gtcggtatcc agttccaggc gcgagccatc
      661 ggccagggtc aggctgcgtc gttcgccgac gcgggtggcg tagtcggcgc tgagcggcga
      721 cacctcatag ccctgccagc cgagcaggcc gacgcctgcc agcgctgcga ggcccttgag
      781 cgccgtgcgc cgcgactgac gcgcctgctc cagcgtacgt ccggcaagcc ccgccggcgc
      841 acggtcgagg cgctgctgca gctgttcgac tcgtgcccag gcctctgcgt ggcgagtgtc
      901 ggccgtcagc cacaggtgcc atgcggctcg ggtctgctcg ccgctggcgc tgtcgtgcag
      961 gcgcacatac cagtccactg cctgttccag cggcgccttc atgcggcctc cagttccagg
     1021 cagtgcagca gcgcctgggc caggtgcttg cgcaccgtgg tgacggacac gccgacgcgc
     1081 atggcggcct tctcgtagct cagcccgtcg agttgcacgg cgaggaagat ggcgcgagtg
     1141 cgcgccccca ggccatcgag caggcggtcg atggccagca ggctgtcgat gatctcggcg
     1201 cgcacttcgg tcgagggctc atagcgctcg ggctggccgg ccagcacgtc caggtaggcc
     1261 tgttccagcg agcggcggcg gtagaggtcg atgaccagac cgcgggccac ggtcgccagg
     1321 tagtggcgtg gctctttcag ggtgccggca gtgcgcgcca gcagtacgcg gacgaaagtg
     1381 tcctgggcca ggtcggcggc atcggcagaa ttgttcaggc gctggcgtaa ccagccgcgc
     1441 aaccagccgt ggtgcgcgcg gtacagcgca tccagctggg cgccgtcgag agcctcggtg
     1501 gacatgtccg catctacccc tgaatcgagt gcaaataaga atttgtcgca attctacggg
     1561 ggaggcgacg ggtttgggaa tgctggggtg aatgagtagg gtggataacg ccgagcttat
     1621 ccaccgttgc aagattgtgt cgctggcctg gttgaaagac gttagccatg ggctacgtcc
     1681 gtcggacgcg ctgggcctat tgccctgatg cgacaattcc tccggaattt tcagccagat
     1741 gttcgggcgg cgccctaaac gcagagagtg ccacctggaa agggcccaca ggtgtgggcc
     1801 ttcaagtgga agacgcgagg cgtcttagaa ctgcgctcgt acagagatag aggcattcag
     1861 cggtgcgcca taggaatagg agtagttgct gacgcggtac tcttcatcca ggacattgtt
     1921 gacgagcagt gacagcgaaa gctcctcggt caactggtaa tccgcattgg cgccaaccac
     1981 aaagtagctg tcgatgtcgt agagcggatc gctctcgcct gccacatggg tatcgtcttg
     2041 tcagcgcacg ctggtgccca gcgtcagctt cggcaccagt gccggttgat acgaggtata
     2101 cagcttgaat agctgctcgg gctgggtggc atcgagaacg ttgccatcgt gatcctcgtt
     2161 gcggaagtag gtataacccg cctgaacctg ccagcgaggt gtcagctctc ccgccacctc
     2221 gaactcccat cccttgccct gggtatcgct tttggcacgg taggcctgat cgccgtccgg
     2281 ggtcacgttg atgccgtctt ccaccgcgag gttgtcgcgt ttcgattcga acacggcgat
     2341 gctcgtgttc aaacggtcat caaaccacgc acctttaagc ccgacctcgt aggtatctcc
     2401 ctcctccgga tcaagcaggc ggccatcggc atccttcaca tcctgcgggt tgaagatctg
     2461 cgtatagctc gcataggccg agagattctg ggtgagatcg agcaccacac cggcgtaggg
     2521 cgtcagctca ctgctgtaca cacgatcatc ccagacgtag gcgtcgtgat aggccgtcgc
     2581 acggtccttc gagtgggact tccaggtggt catgcgtccg cccaggatca ccgagagacg
     2641 gtcagtaggg tgtagccgag tggcgacgaa cgcaccttct tgttcgatct tcgaatcaaa
     2701 ggggcaatcg tcttcggagc cgtcgaggtc attccagttg ggctcgttga aatgcagccc
     2761 gccgttattc caggtcgcga aatccgagta ggcgttactc aggaaggcgg tatccgcttg
     2821 ctgatcgttg cgatagaagt tgaagccggt gacgagttcg tgctcccgtc cgaacagttg
     2881 gtacttgccg tcgagctggg catcgacaat gtgtgtgtcg tagctgtagt cgaggctgag
     2941 aacgcgcccc acggcaggtg agccatcctc cgggatgagc cagctgatca tgccgcggtg
     3001 catcttggaa ttgaatttgc cgtaaccgta gctgagcctg cccttccagt cttcgctgaa
     3061 ctggtgagcc agtgtcgtcg tcaggtagct gcgatcactg ttcagatcag tccagtcggg
     3121 cacgatgctg gtggactcgt catggggaat gggcgtttcc ccgtcggcga aatagaagaa
     3181 ggcgccatag tcggctgccc aaggagcgcc tttgctgtcg gcggtgccat gttccagggt
     3241 gacggtcagc agcgtgtcca ggctgaggtc tgcctctatc acgccgtaga ggatgctgcg
     3301 ctcattgctg tatctgtcga cccaggtgtc gccctcgtcg taggcgccca ccacacgtgc
     3361 gcgcagcgtt ccggactcgt tgagcgggcc acccacgtcg gccatgccgc gatagtgatc
     3421 ccagcttccg gtggtggcct ccagggtggt ctgcaattcg cttgtcggct tcttgcgcgt
     3481 caacgccatc aaggcactgg gttcaccggc tccagtcatc aggccggtcg agccacgtac
     3541 cacggtgacg gagtcgtaga tggaggtatc cagtgcgcca tgcccgtatt gagaggattc
     3601 cgacatcgtc tcccatggca cgttgacgcc atcgacctga tagctgttca cgatgaaccc
     3661 gcgcgaatac atccaggtcc ggccgccgat tggtgtgccg gtcgagttga agtgcacgcc
     3721 gggtacttgt tccgcgacct cggccaggga gttgagattc tgttgttcca tgcgctcgcg
     3781 ggtgattacc gtgaccgact ggggcgtttc gcgtagtgaa aggttaagcc cggtcgcggc
     3841 ggtcaccggc cctgcggtgg tcagtgaccc ggtgccttcg gtgacgcccc ccaacccatt
     3901 ggcattaatg gtggtggtgc ccagctccag ggcgccatcg ccgtcggcct tggattgcac
     3961 gctgtaggta ccactttccg tgctgcgcag ctccaggccg ctgccttgca aggcttgttg
     4021 cagtgcctgt tcggcggtca tctcgccgct aatcgccggg gcttgcttgc cctgtaccaa
     4081 cgccggatcg agggaaacca cctggccgct cagccgggcg atggcgttga gcgactgcgc
     4141 caggctggcg gcgggcaggt cgaagcggat cagccgttgt tcggcgacag cgagagtgct
     4201 ggcgcaggcc agtgatagtg acagggcgag ggtacggggc cagggttcga acacggggat
     4261 ctcctgcaaa agtgtggggg tcaggagata ggtgtgatgg gcgcgaaaaa ccggacacga
     4321 atgcgaagaa ttttcactta ccccggcgcc cggttcagtt ggccgggccg accagggtca
     4381 gccaggggcc gtagtggtca acacggatcg gcagggtttc cgccagggcg gtgaggctgc
     4441 gcggggtgtc gtccagcggg aatacgcc
//
LOCUS       DATIHC010000255         2697 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7674, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000255 DATIHC010000000
VERSION     DATIHC010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2697
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7674"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..82
                     /locus_tag="VLF16_04060"
     CDS             <1..82
                     /locus_tag="VLF16_04060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70087.1"
                     /translation="ADTIPVEVAGKRQAEAIKMMDRVGWN"
     gene            254..1873
                     /locus_tag="VLF16_04065"
     CDS             254..1873
                     /locus_tag="VLF16_04065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017938084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HSX70088.1"
                     /translation="MSHPVQRRWYPIAFAIAALVLLPLSVLALSWHEVDGEIWRHLWD
                     TQMPRLLGNTLVLVLGVGVGVTLLGVSLAWLTSLCEFPGRRWLDWALMLPFAIPAYVL
                     AFVFIGLFDFAGPVQSLLREWFGTGIRFPRVRSTGGVILVLVLVFYPYVYLLARSAFL
                     AQGRGLLEAARVLGQSPWQAFWRVALPMARPAIGAGLALAIMETLADFGAVAVFNFDT
                     FTTAIYKTWYGFYSLSSATQLASLLLLAVMLVLYGERRARGASRPASERPRGAALYRL
                     RGWKAFAASAWCGLVFACAFVVPLLQLLAWFWQRGRFDLDERYAGLILHTLSLGGLAA
                     LITVAVALLLAFARRQAPTRPIRSAVSLANLGYALPGSVLAVSIMLAFSFLDRELVIP
                     LSTWLGGAGKPLLLGSLFALLLAYLVRFMAVAYGPLESSLARIRPSLPQAARSLGVSG
                     PALFLRVYLPLLLPGALSAALLVFVDVLKEMPATLLMRPFGWDTLAVRIFEMTSEGEW
                     ARAALPALTLVLVGLLPVIGLIRRSARQPGH"
     gene            1972..>2697
                     /gene="gcvT"
                     /locus_tag="VLF16_04070"
     CDS             1972..>2697
                     /gene="gcvT"
                     /locus_tag="VLF16_04070"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017530883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004047 - aminomethyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HSX70089.1"
                     /translation="MGQRTPLYDQHLALGAKMVDFGGWDMPLHYGSQVEEHHQVRRDC
                     GVFDVSHMTVVDITGAQAKAWLQHLLANDVERLKTQGKALYSGMLNERGGVIDDLIVY
                     LTDWGYRMVVNAATRDKDIAWMQAQTAGFEVTLNERAELAMLAIQGPNARAKTAELVS
                     HARAALIHELKVFQGLPEGDWFIARTGYTGEDGLEIMLPAEQAASFLNELVGAGIAPI
                     GLGARDTLRLEAGMNLYGQDMDED"
BASE COUNT          346 a          954 c          905 g          492 t
ORIGIN      
        1 ggccgacacc atccccgtgg aggtcgccgg caagcgtcag gccgaggcca tcaagatgat
       61 ggatcgggtc ggctggaatt aaagccggcg tagggtggat ggcgcttctt ccatccaccg
      121 gctgacggca gagtggccgc ctgggggaaa acgctgcgcg gttttccacc ctgccaaacc
      181 ccgttctacc tcaatcgtta tactcgacgc cccggcccgt ccggggcgtc tcgtttctca
      241 gccaggagtc cgcgtgagtc atcccgttca gcgccgctgg tatcccatcg ctttcgccat
      301 cgccgccctg gtgctgctgc cgctctcggt gctggcgctg tcctggcacg aggtcgacgg
      361 cgagatctgg cgccacctgt gggacaccca gatgccgcgc ctgctcggca acacgctggt
      421 gctggtgctc ggggtcggcg tcggcgtgac gctgctcggc gtcagcttgg cctggctcac
      481 cagcctctgc gaattccccg gccggcgctg gctggactgg gcgctgatgc tgcccttcgc
      541 catccccgcc tacgtgctgg cgttcgtctt catcggcctg ttcgatttcg ccgggccggt
      601 gcagagcctg ctgcgcgaat ggttcggcac gggcatccgc ttcccccggg tgcgctccac
      661 cggcggcgtg attctggtgc tggtgctggt gttctatccc tacgtctatc tgctcgcccg
      721 cagcgctttc ctggctcagg gccgcggcct gctcgaggcc gcgcgggtgc tcggccagtc
      781 gccctggcag gcgttctggc gggtggccct gccgatggcg cggccggcca tcggcgccgg
      841 cctggcgctg gcgatcatgg agacgctggc cgatttcggc gcggtggcgg tgttcaattt
      901 cgacaccttc accaccgcca tctacaagac ctggtacggc ttctacagcc tgtccagcgc
      961 cacccaactg gccagcctgc tgctgctggc ggtgatgctg gtgctctacg gcgagcgccg
     1021 cgcccgcggt gccagccgcc cggccagcga gcggccgcgc ggcgcggcgc tgtaccgcct
     1081 gcggggctgg aaggccttcg ccgccagtgc ctggtgcggc ctggtgttcg cctgcgcctt
     1141 cgtcgtgccg ctgctgcagt tgctggcctg gttctggcaa cgcggccgct tcgacctgga
     1201 cgagcgctac gccggcctga tcctgcatac cctgtcgctc ggcggcctgg ccgcgctgat
     1261 caccgtggcc gtggcgctgc tgctggcctt cgcccgccgg caggcaccga cccggccgat
     1321 ccgcagcgcg gtgagcctgg ccaacctggg ctacgcgctg cccggttcgg tgctggcggt
     1381 gtcgatcatg ctggccttca gcttcctcga ccgcgagttg gtgatcccgc tgtccacctg
     1441 gctcggcggc gccggcaagc cgctgctgct gggcagcctg ttcgccctgc tgctggccta
     1501 tctggtgcgc ttcatggcgg tggcctacgg gccgctggag agcagcctgg cgcgcatccg
     1561 tccgtcgctg ccgcaggccg cgcgcagcct cggcgttagc gggccggcat tgttcctgcg
     1621 ggtctacctg ccgttgctgc tgcccggtgc gctgtccgcc gcgctgctgg tgttcgtcga
     1681 cgtgctcaag gaaatgccgg cgacgctgct gatgcgcccc ttcggctggg acaccctggc
     1741 agtgcgcatt ttcgagatga ccagcgaggg cgaatgggcc cgcgccgccc tgccggcgct
     1801 gacgctggtg ctggtcgggc tgctgccggt gatcggtctg atccgccgct cggcgcgcca
     1861 gccggggcat tgaccacacg gagtgtccag tttctttgcg cagggctaca atgcgcgcct
     1921 gcttgcgcag ccgtccatga accccgccgg ggtccgtata aggagttatc catgggacag
     1981 cgtacacccc tctatgacca acacctggcg ctgggcgcca agatggtcga tttcggcggc
     2041 tgggacatgc cgctgcacta cggttcccag gtcgaggagc accaccaggt acgtcgcgac
     2101 tgcggcgtgt tcgacgtttc ccacatgacc gtggtcgaca tcaccggcgc ccaggccaag
     2161 gcctggctgc agcatctgct ggccaacgat gtcgagcgcc tgaaaaccca gggcaaggcc
     2221 ctctacagcg gcatgctcaa cgagcgtggc ggggtgatcg acgatctcat cgtctacctc
     2281 accgactggg gctaccgcat ggtggtcaac gccgccaccc gcgacaagga catcgcctgg
     2341 atgcaggcgc agaccgccgg cttcgaggtc accctgaacg agcgcgccga actggccatg
     2401 ctcgccatcc agggtcccaa tgcccgggcc aagaccgccg aactggtgtc ccacgcccgc
     2461 gccgcgctga tccatgaact caaggtgttc cagggcctgc cggaaggcga ctggttcatc
     2521 gcccgcaccg gctacaccgg cgaggacggc ctggagatca tgctgccggc cgaacaggcc
     2581 gcctcgttcc tcaacgaact ggtcggtgcc ggcatcgccc cgatcggcct gggcgcccgc
     2641 gacaccctgc gcctggaggc cggcatgaac ctgtacggcc aggacatgga cgaggac
//
LOCUS       DATIHC010000256         3615 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28732, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000256 DATIHC010000000
VERSION     DATIHC010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3615
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28732"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..452)
                     /locus_tag="VLF16_04075"
     CDS             complement(<1..452)
                     /locus_tag="VLF16_04075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017906793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSX70090.1"
                     /translation="MAAPESEAVMKITQLRNATLIVQFGEVHLLVDPMLAQRGQLPSL
                     KFVTRSRRRNPLVELPDTAAEHLERVTHCLITHCQKGHFDHLDRAAVRWLRERGTPVL
                     CMDEDADYLRRLRLNVQVLAPGEGGAFFGGSVRAIPCVHGEGFVGRLMA"
     gene            510..1472
                     /locus_tag="VLF16_04080"
     CDS             510..1472
                     /locus_tag="VLF16_04080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017906794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSX70091.1"
                     /translation="MPTRVIGLLLYPGCMPAGLFAFADLLSAANRQAGTRHFELRWVG
                     LDPQAVECAQGLRLQPEITLAEARCDAVLIPGLWADSEARMAQALEQNRSLLHALARL
                     NRKTRLWSYCTGVCLLAGSGRLDGEEATATWWLADSLRARFPKVGWQFQRTQLFGPRV
                     ATASGVSGHLPIARALIEEQLGAEAYRELARVMVLPRPEPAAPVFRTLGVAEQSDPLL
                     RRLQLLVERQPARLLVAEPLAQELAVSARTLARKVKALTGHALADHVRLIKLNQAGER
                     LILTSESVAQISEALGFGDESSFRRTFKRVTGMTPLAYRQSFRL"
     gene            complement(1482..2771)
                     /locus_tag="VLF16_04085"
     CDS             complement(1482..2771)
                     /locus_tag="VLF16_04085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M18 family aminopeptidase"
                     /protein_id="HSX70092.1"
                     /translation="MRAELNQGLIDFLKASPTPFHATRSLAQRLQAAGFRPLDEREPW
                     HTEAGGRYYVTRNDSSIIAFRLGNRAPLDGGMRLVGAHTDSPCLRVKPQPELQRQGFF
                     QLGVEVYGGALLAPWFDRDLSLAGRVTFREGGKVQSQLIDFQQPIAVVPNLAIHLNRE
                     ANQGWAINAQNELPPILAQLSGDERADFRALLADRLAEEHGISADAVLDYELSFYDTQ
                     GAAVIGLNQDFIAGARLDNLLSCYAGLQALIEAEGDETCVLVCTDHEEIGSCSACGAD
                     GPFLEQVLRRVLPEGDGFVRVIQKSLLVSADNAHGVHPNYAERHDGNHGPKLNAGPVI
                     KVNSNQRYATNSETAGFFRHLCLAEEVPVQSFVVRSDMGCGSTIGPITASQLGVRTVD
                     IGLPTFAMHSIRELAGSHDLAHLVKVLAAFYASAELA"
     gene            complement(3044..>3615)
                     /locus_tag="VLF16_04090"
     CDS             complement(3044..>3615)
                     /locus_tag="VLF16_04090"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HSX70093.1"
                     /translation="LLLSVPGRAEDNRDCLVTRLQENGYPEALIVHRLDWETSGIIVL
                     ARDPDSHRELSRQFHDRETEKAYTALCWGQPELDSGSIDLPLRYDPPTKPRHVVDHEQ
                     GKHALTFWRVVERCGHYCRVELTPITGRSHQLRVHMLSIGHPLLGDRLYAHAEALAAH
                     ERLCLHASMLGLTHPQTGERLRFDCPAPF"
BASE COUNT          541 a         1144 c         1349 g          581 t
ORIGIN      
        1 gccatcagcc ggccgacgaa accctccccg tgcacgcagg gaatggcacg cacgctgccg
       61 ccgaagaagg cgccgccctc gccgggcgcc agcacctgca cattcagccg caggcggcgc
      121 agatagtcgg cgtcttcgtc catgcacagc accggcgtgc cgcgctcgcg cagccagcgc
      181 acggcggcgc ggtcgaggtg gtcgaagtgg cccttctggc aatgggtgat caggcaatgg
      241 gttacccgct ccaggtgttc ggcggcagtg tccggcaact cgaccagcgg gttgcgccgg
      301 cgcgagcggg tgacgaactt gagcgatggc aactggccgc gctgggccag catggggtcg
      361 accagcaggt ggacctcgcc gaactggacg atgagggtgg cgttgcgcaa ctgggtgatc
      421 ttcatgacgg cctccgattc aggtgcggcc attgtgaaaa ttcctcggcc gggcgagcat
      481 ggcgtgaatt gccataaagc ggacatttca tgccaactcg agtcatcggc ctgttgctct
      541 atcccggttg catgccggcc ggcctgttcg ccttcgccga tctgctgtcg gccgccaatc
      601 ggcaggccgg cacgcggcac ttcgagctgc gctgggtcgg cctcgacccg caggcggtcg
      661 aatgcgccca ggggctccgc ctgcagcccg agatcacgct ggccgaggcg cgctgcgatg
      721 ccgtgctgat ccccggactg tgggcggaca gcgaggcgcg gatggctcag gcgctggagc
      781 agaaccgctc gctgctgcac gccttggccc gcctgaaccg caagacgcgg ctgtggagct
      841 actgcaccgg cgtctgcctg ctggcgggca gcggccggct ggacggcgag gaggcgaccg
      901 ccacctggtg gctggcggac agcctgcggg cgcgttttcc caaggtcggc tggcaattcc
      961 agcgcaccca gctgttcggc ccgcgagtcg ccacggcctc gggcgtcagc ggccatcttc
     1021 cgattgcccg ggcgctgatc gaggaacaac tgggcgccga ggcctatcgc gagctggcgc
     1081 gggtgatggt gttgccgcgg ccggagccgg ccgcgccggt gttccgtacg ttgggcgtgg
     1141 cggagcagag cgatccactg ctgcgccggc tgcagctgct ggtggaacgc cagcctgcac
     1201 ggctgctggt ggccgagccg ctggcgcagg aactggcggt gagtgcccgt accctggcgc
     1261 gcaaggtcaa ggcgctgacc ggccacgcgc tggccgacca tgtgcggctg atcaagctca
     1321 atcaggccgg cgagcggctg attctgacct cggaatcggt cgcgcagatc agcgaggcgc
     1381 tgggcttcgg cgatgaatcc agctttcgtc gcaccttcaa gcgggtcacc gggatgacgc
     1441 cgctggccta ccggcagagc ttcaggctct aaccggcagg ttcaggccag ctcggcgctg
     1501 gcgtagaagg cggccagcac cttgaccagg tgcgccaggt cgtggctgcc ggccagctcg
     1561 cggatggagt gcatggcgaa ggtcggcagg ccgatgtcca cggtgcgcac gcccagctgg
     1621 ctggcggtga tggggccgat ggtggagcca cagcccatgt cgctgcgcac cacgaagctc
     1681 tgcaccggca cttcctcggc caggcacagg tggcggaaga agccggcggt ctcgctgttg
     1741 gtggcgtaac gctggttgct gttgaccttg atcaccgggc cggcgttgag cttcgggccg
     1801 tggttgccat cgtggcgttc cgcgtagttg gggtgcacgc cgtgggcgtt gtcggccgac
     1861 accagcagcg acttctggat gacccggacg aagccgtcgc cctccggcag cacacggcgc
     1921 agcacctgct cgaggaacgg gccgtctgca ccgcaggcgg agcaggagcc gatctcctcg
     1981 tggtcggtgc acaccagcac gcaggtctcg tcgccctcgg cctcgatcag cgcctgcagg
     2041 ccggcgtagc aggacagcag gttgtccagg cgcgcgccgg cgatgaagtc ctggttgagg
     2101 ccgatcaccg cggcgccctg ggtgtcgtag aagctcagtt cgtaatccag caccgcgtcg
     2161 gcgctgatgc cgtgctcctc ggccaggcga tcggcgagca gggcgcggaa gtcggcgcgc
     2221 tcgtcgccgc tgagctgggc gaggatcggc ggcagctcgt tctgtgcgtt gatcgcccag
     2281 ccctggttgg cctcgcggtt gaggtggatg gccaggttgg ggaccacggc gatcggctgc
     2341 tggaagtcga tcagctggct ctgcaccttg ccgccctcgc ggaaggtcac gcggccggcc
     2401 agcgacaggt cgcggtcgaa ccagggcgcg agcagggcgc cgccgtagac ttcgacgccg
     2461 agctggaaga agccctgacg ctgcagctcc ggttgcggtt tgacgcgcag gcaggggctg
     2521 tctgtatggg cgccgaccag gcgcatacca ccgtccagcg gtgcgcgatt gcccaggcgg
     2581 aaggcgatga tcgaggagtc gttgcgggtg acgtagtagc gcccgccggc ctcggtgtgc
     2641 cacggctcgc gctcgtccag cggacggaag ccggcggcct gcaggcgctg ggccaggctg
     2701 cgggtggcat ggaagggggt gggcgaggcc ttgagaaaat cgatcaggcc ctggttcagc
     2761 tctgcgcgca taacggactc cggacagcga tggcccgagt ttatcggatt cgactggcgg
     2821 attggcaggc ggctgccaag gatgcgcgac agatcttcgg cccgtagggt ggatcgcgct
     2881 ccatcgatcc accgagcggc gttgtggtgg atgaagagag cgtcatccac cctacgagct
     2941 ctctcaggtg gcagaggtca gttgtagccc ggatgcaatc cgggagagcg gagctgcctg
     3001 cttcccggat tgcatccggg ctacgggaga gcggcggaaa atgtcagaac ggcgccgggc
     3061 agtcgaagcg caggcgctcg ccggtctgcg ggtgggtcag gccgagcatg ctggcgtgca
     3121 ggcacaggcg ttcatgcgcg gccagggcct ctgcgtgggc gtagaggcgg tcgccgagca
     3181 gcggatgacc gatggacagc atgtgcacgc gcagctggtg cgagcggccg gtgatgggcg
     3241 tgagctccac ccggcagtag tggccgcagc gctcgaccac gcgccagaag gtcagcgcgt
     3301 gcttgccctg ttcatggtcg accacatggc gtggcttggt cggcgggtcg tagcgtaggg
     3361 gcaggtcgat gctgccgctg tccagctccg gctggcccca gcacagggcg gtgtaggcct
     3421 tctcggtctc gcggtcgtgg aactgccgcg acagctcgcg gtggctgtcc gggtcgcggg
     3481 ccaggacgat gatgccgctg gtctcccagt ccaggcgatg gacgatcagc gcctcggggt
     3541 agccgttctc ctgcaggcgg gtcaccaggc aatcgcggtt gtcctctgcg cggccaggca
     3601 ccgagagcag caggg
//
LOCUS       DATIHC010000257         2940 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_3043, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000257 DATIHC010000000
VERSION     DATIHC010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2940
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3043"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..169)
                     /locus_tag="VLF16_04095"
     CDS             complement(<1..169)
                     /locus_tag="VLF16_04095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor"
                     /protein_id="HSX70094.1"
                     /translation="MTAASGLRMYNKAQAQDSQHQLIERYAPLVKRIAYHLLARLPAS
                     VQVDDLMQAGMI"
     gene            complement(166..999)
                     /gene="fleN"
                     /locus_tag="VLF16_04100"
     CDS             complement(166..999)
                     /gene="fleN"
                     /locus_tag="VLF16_04100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar synthesis regulator FleN"
                     /protein_id="HSX70095.1"
                     /translation="MGSMHPVQVIAVTGGKGGVGKTNVSVNLSLALADLGRRVMLMDA
                     DLGLANVDVLLGLTPKRTLADVIAGECDIKDVLLQGPGGIRIVPAASGTQSMVQLSPV
                     QHAGLIQAFSDISDNLDVLVIDTAAGIGDGVVSFVRAAQEVLVVVCDEPTSITDAYAL
                     IKLLNRDYGMSRFRVLANMAHSPQEGRNLFAKLTKVTDRFLDVALQYVGAVPYDESVR
                     KAVQKQRAVYEAFPRSKCALAFKAIAQKVDTWPLPANPRGHLEFFVERLVQQPIAGTA
                     V"
     gene            complement(1096..2421)
                     /gene="flhF"
                     /locus_tag="VLF16_04105"
     CDS             complement(1096..2421)
                     /gene="flhF"
                     /locus_tag="VLF16_04105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA];
                     GO_process: GO:0044781 - bacterial-type flagellum
                     organization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HSX70096.1"
                     /translation="MQVKRFFAADMRTAMKLVRDELGADASIIGNRRVAGGVELTAAL
                     DYQPAAPSRQPNPALEAELRKTQATIANAQAELAVRAVADERKDRQLFANESLIAPEL
                     PATAVKVQRPVAGPQPAPKPAAAAVDQRALDAMRFELNGLRELIEVQLGSIAWGQLQN
                     RKPQQANLWRRLQRMGLSADLSKALLERVAQVADPRQAWRMLLAHLAHAIRTPEVEPL
                     EEGGVIALVGPAGMGKTTTLAKMAARYVLKYGAQSIALVSMDSFRIGAQEQIKTLGRI
                     LNVSVTQVDPGQSLVQALAPLARKKVVLIDTAGLPANDPALRIQLESLAGRAVKAKSY
                     LVLAATSQAQVLKAAYHGYKHCGLAGCILTKVDEAANLGEVLGLAISQHLPVAYLADG
                     PKIPDDLQVPRSHQLVSRAVSLQTAEDPSEETMADMFAGLYHHPARRAG"
     gene            complement(2434..>2940)
                     /locus_tag="VLF16_04110"
     CDS             complement(2434..>2940)
                     /locus_tag="VLF16_04110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHIPEP family type III secretion protein"
                     /protein_id="HSX70097.1"
                     /translation="VSLSTLLKVLQALLQEQVPVRDIRTIAEAISNVAGKSQDPAAMV
                     AAVRVALSRAIVQSIVGLEPELPVITLEPRLEQLLLNSLQKAGQGSEDGILLEPGMAE
                     KLQRSLVEAAQRQEMLGKPVILLVAGPVRAMLSRFARLAVPSMHVLAYQEIPDNKQVT
                     IVATVGQN"
BASE COUNT          477 a          973 c          961 g          529 t
ORIGIN      
        1 cgatcatgcc agcctgcatc aggtcgtcga cctgcacgct ggccggaagg cgcgccaaca
       61 ggtggtaggc gatgcgcttg accagaggcg cgtagcgctc gatcaattgg tgctgggaat
      121 cctgcgcctg cgctttgttg tacatgcgaa gtccactggc tgctgtcata cggccgtccc
      181 cgcgatcggc tgctgcacca gacgctcgac gaagaactcc agatggccgc gcgggttggc
      241 cggaagcggc cacgtgtcga ctttctgggc gatcgccttg aacgccagtg cgcatttcga
      301 gcgcgggaag gcttcgtata ccgcgcgctg tttctgcacg gctttgcgga cggattcgtc
      361 gtagggcacg gccccgacgt actgcaaagc cacatcaaga aaacgatcgg tcaccttggt
      421 cagcttagca aagagattgc gcccttcctg cgggctgtgg gccatgttgg ccagcacgcg
      481 gaagcggctc atgccgtaat cgcggttgag cagcttgatc agcgcatagg cgtcggtgat
      541 cgaagtcggc tcgtcgcaga ccaccaccag cacttcctgg gcggcgcgca cgaagctgac
      601 cacgccgtca ccgatgccgg cggcggtgtc gatcaccagc acgtcgaggt tgtcgctgat
      661 gtcgctgaag gcctggatca ggcccgcgtg ctgcaccggc gaaagctgca ccatgctctg
      721 ggtgcccgaa gcggccggca cgatacggat gccgccgggc ccctggagga ggacatcctt
      781 gatatcgcac tctccggcaa tcacgtcggc cagcgtgcgc ttcggcgtca ggccgagcag
      841 gacgtcgacg ttggccaggc ccaggtcggc gtccatcagc atgacccggc gaccgaggtc
      901 ggccagtgcc agcgacagat tcaccgacac attggtcttg ccgacgccgc ccttgccgcc
      961 agtgactgcg atcacctgta cgggatgcat actacccatg ttcttctctt acccttgtct
     1021 tgccggtctg ggctggtcgg gcaacgacac cgaccctttc ctaacactag aacgccttga
     1081 gcggcgctgc ctgccctagc ccgcacgacg cgccgggtgg tggtacaggc cggcgaacat
     1141 gtccgccatg gtctcttcgc tcggatcctc cgcagtctgc aggctcacgg cgcggctcac
     1201 cagctgatgg ctgcgcggca cctgcagatc gtccgggatc ttcggcccat ctgccagata
     1261 ggctaccggg agatgctggc tgatagccag tcccagaacc tctccgaggt tggccgcctc
     1321 gtccaccttg gtcaggatgc agccggccag accgcagtgc ttgtagccgt gataggcggc
     1381 cttgagcacc tgcgcctggc tggtcgccgc cagtaccagg tagctcttcg ctttgaccgc
     1441 acgaccggcc aggctttcca actgtatgcg cagggccgga tcattggccg gcagaccagc
     1501 ggtatcgatc agcaccacct tcttgcgtgc cagcggcgcc agggcctgaa ccagcgactg
     1561 gcccgggtcg acctgggtca ccgacacgtt gaggatgcgg ccgagggtct tgatctgctc
     1621 ctgagcgccg atgcggaagc tgtccatgct caccagggca atgctctgcg cgccgtattt
     1681 caatacgtag cgcgccgcca tcttggccag ggtggtggtc ttgcccatgc ccgccgggcc
     1741 gaccagagcg atcacgccgc cctcttccag cggctcgacc tcgggggtgc ggatcgcatg
     1801 ggccaggtgg gccagcagca tgcgccaggc ctggcgcgga tcggcgacct gcgccacgcg
     1861 ttccagcagg gccttggaca ggtcggccga caggcccata cgctgcaggc ggcgccacag
     1921 gttggcctgc tgcggcttgc ggttctgcag ttgcccccag gcgatggagc ccagctgtac
     1981 ctcgatcagc tcgcgcagac cgttcagttc gaagcgcatg gcatccagcg cgcgctggtc
     2041 gaccgcggcg gcggccggct tcggcgccgg ctgcggcccg gcgaccgggc gctgcacctt
     2101 gaccgcggtg gccggcagtt cgggggcgat cagcgactcg ttggcgaaca actggcgatc
     2161 cttgcgctcg tcggccaccg cacgcacggc cagttcggcc tgggcgttgg cgatcgtcgc
     2221 ctgggtcttg cgcagctccg cttccagcgc cgggttgggc tggcgagacg gcgcggcggg
     2281 ctggtaatcc agcgcagcgg tcagctccac gccaccggcc acacggcgat tgccgatgat
     2341 ggaggcatca gcgcccagct catcacgcac cagtttcatg gcggtacgca tatcggcggc
     2401 gaagaagcgt ttgacttgca tggcttagaa ccctcagttc tggccgaccg tggcgacgat
     2461 cgtgacctgc ttgttgtccg gtatttcctg gtaggccagt acgtgcatgg acggtacggc
     2521 gagccgcgcg aatcgcgaga gcatcgcccg gaccggaccg gccaccagca gaatcaccgg
     2581 cttgccgagc atttcctggc gctgcgccgc ttccaccagg gagcgttgca gcttttcggc
     2641 catgccgggc tcgaggagga tgccatcttc ggagccctga ccggccttct gcaggctatt
     2701 cagcaataac tgttccaacc tgggttccag ggtgatcaca ggcagctccg gctctagtcc
     2761 cacaatgctt tgcacgattg cgcgggacag cgcgacgcga accgccgcca ccatcgcggc
     2821 gggatcttga ctcttgccgg cgacgttgga gatggcctcg gcgatggtgc ggatgtcgcg
     2881 cacgggaacc tgctcctgca acagcgcctg caagaccttg agcagcgtgg agagcgacac
//
LOCUS       DATIHC010000258         1693 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12317, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000258 DATIHC010000000
VERSION     DATIHC010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1693
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12317"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1534)
                     /locus_tag="VLF16_04115"
     CDS             complement(<1..1534)
                     /locus_tag="VLF16_04115"
                     /inference="COORDINATES: protein motif:HMM:NF014763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HSX70098.1"
                     /translation="MKFIPQLKIAQKLPLALVGSALVVSAGVGIASYLIGLGTVQEQR
                     NQSMQASLTTASSLVGDYFTSAEVDLRLFVQRSDTVTAMKNLTRALDELRMGLKERAA
                     PQLQAAYVTENPDPENRASVDSVGAKGATYDAPHKRFHPGFRTLMQERAYSDVLLISA
                     AGDVVYSVAKNTDFVSNVLTDTTAAASGLGLAFAAAKDLPDGQASFVDFAVYDTTGTP
                     QSFMAMPVYEKDENTGVMVLSISSDGMSQRVSELSGMGQTGEVVVVGADGLLRSESPR
                     TEAADVLQTTLTSDVVAKAFGGEHAVGVSTDYRSAPMVVRAQRVSIHDVQWAVVAVQP
                     EQEAFAAVVNMRNMTLLVGGVLLAVATVVGFLVSRSISRPISRLTGTMETLAQGDLAV
                     EVEGARRSDEIGAMARAVEVFRENGLKVAEMTEAEAAQIIRTQAERAAMMQDLQRAFG
                     AVVDAAIAGDFSKRVDAEFPDDELNTLAGSVNNLVATVDRGLSETGSVLASLADTDLT
                     RRM"
BASE COUNT          288 a          572 c          535 g          298 t
ORIGIN      
        1 ccatgcggcg ggtcaggtcg gtatcggcca gcgaggccaa taccgagccg gtttcgctca
       61 ggccgcggtc gaccgtcgcc accaggttgt tgaccgagcc ggccagcgta ttgagttcgt
      121 cgtcgggaaa ttcggcatcc acccgcttgc tgaaatcgcc ggcgatggct gcatcgacca
      181 ccgcgccgaa ggcgcgctgc agatcctgca tcatggcggc gcgttccgcc tgtgtgcgga
      241 tgatctgcgc ggcctcggcc tcggtcatct cagccacctt gaggccgttc tcgcggaaca
      301 cttccacggc gcgcgccatg gcaccgattt cgtcactgcg gcgcgcgcct tccacctcga
      361 cggcaaggtc gccttgggcc agcgtctcca tcgtgcccgt gagccggctg atcggccggc
      421 ttatgctgcg cgacacgagg aacccgacca cggtcgcaac cgccagcagc acgccaccga
      481 ccagcaacgt catgttgcgc atgttgacca cggcggcgaa ggcctcttgc tccggctgca
      541 cggccactac ggcccattgc acgtcgtgaa tggaaaccct ctgcgcccgc accaccatcg
      601 gggcgctgcg ataatcggtg ctgaccccca cggcatgttc gccgccaaag gccttggcaa
      661 ccacatccga ggtcagcgtg gtttgcagca catcggccgc ttccgtgcgt ggcgattcgc
      721 tgcgcaacag accatccgcg cccaccacga ccacttcccc ggtctggccc atgcccgaca
      781 gctctgacac acgctggctc atcccgtcgg acgagatcga cagcaccatg acgccggtat
      841 tttcgtcctt ctcgtagacg ggcatggcca tgaagctctg cggcgtgccc gtggtgtcat
      901 agaccgcgaa gtccacgaag ctggcctggc cgtccggcag gtccttggcg gcggcgaagg
      961 ccaggccgag gccggacgct gcggccgtcg tgtcggtcag cacgttggaa acgaagtcgg
     1021 tattcttggc caccgaatag accacgtcgc cggcggcgct gatcagcagc acgtcggaat
     1081 aggcccgttc ctgcatcagc gtgcggaagc cggggtggaa gcgcttgtgc ggcgcgtcat
     1141 aggtcgcgcc cttggcgccg acgctgtcga ccgaggcacg attttccgga tcgggatttt
     1201 cggtgacata ggcggcctgc aattgcggcg ccgcgcgttc cttgaggccc atgcgcagct
     1261 cgtcgagggc gcgcgtcagg ttcttcatgg ccgtgacggt gtcggagcgc tgcacgaaaa
     1321 gcctgaggtc cacttccgcg ctggtgaagt aatcgcccac caaggagctc gccgtggtca
     1381 gcgaggcctg catcgactgg ttgcgctgct cctgcaccgt accaaggccg ataaggtagc
     1441 tggcaatgcc cacgccggcg ctgaccacca gggccgaacc caccagcgcc aggggcagct
     1501 tctgggcgat cttgagctgc ggaatgaact tcatgaaatg tcgtctcccc aaaaccggcc
     1561 gctccctccc gcgtccccgc ccgaaaaggg gtgtgacgca ggcagccgtg gcgcgacgcg
     1621 gcgcgctagt catggaaacg atataggagg gggcttaatc acttcttacg gataattgcc
     1681 gatggcccaa ttt
//
LOCUS       DATIHC010000259         1804 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_40458, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000259 DATIHC010000000
VERSION     DATIHC010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1804)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1804)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1804
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40458"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1240
                     /locus_tag="VLF16_04120"
     CDS             <1..1240
                     /locus_tag="VLF16_04120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008568287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HSX70099.1"
                     /translation="ALAFCVVGFAYLMLFSNRLLPDRDTLSKQLRPNLDRTFMTELLV
                     PHDSPVIGKSLSEAHLNGGSGLQVLKIFRDQQELTEPTGDTLLQAGDLLVLHGQVKDM
                     VDMRESNRLSFNRGEAFETVSSHDVILAEAIVGRGSRYSNRPMRDLDLTARYGIAVLA
                     VHRQDENVSGNLDDFHLQFGDVMLVEGTPAQIKRFADNGELISLNTVQERAYRRDKAP
                     IAIVATLAVMLLAAFEVMPIEGLAMIACAVVIATRCLDVEDAYKAVDWKILSLIFGML
                     AISIAMGKVGLIDLIVSHTMSALPHASPLLILGFVYLLTTCLTELLSNNAVAVLVTPV
                     AIGIAQSLGLDPRPFVVAVMFAASVSFATPIGYQTNTFVYNAGGYRFSDFMRIGIPLN
                     ILMVGVAMIVIPLIWPLVPA"
     gene            1304..1741
                     /gene="trxC"
                     /locus_tag="VLF16_04125"
     CDS             1304..1741
                     /gene="trxC"
                     /locus_tag="VLF16_04125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019360976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_process: GO:0006662 - glycerol ether metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxC"
                     /protein_id="HSX70100.1"
                     /translation="MSEPLLIPCPACNGLNRIPAERLADAPRCGRCKSAVLPGTPFEL
                     NQASFAAQLRGDLPLLVDVWADWCGPCKAFAPTFQQAASQLQGRCRLGKLDSEANPQL
                     AGQLGIRSIPSLILFRGGVEVARQAGALPLPQLLAWLRSQGIA"
BASE COUNT          284 a          664 c          559 g          297 t
ORIGIN      
        1 ggcgctggcc ttctgcgtgg tcggtttcgc ctatctgatg ctgttcagca accgcctgct
       61 gccggaccgg gacaccctgt ccaagcagct gcgccccaac ctcgaccgca ccttcatgac
      121 cgagctgctg gtaccgcacg actcgccggt gatcggcaag agcctgtccg aggcgcacct
      181 caacggcggc agcggcctgc aggtgctgaa gatcttccgc gatcagcagg agctgaccga
      241 gcccaccggc gacaccctgc tgcaggccgg cgacctgctc gtgctgcacg ggcaggtcaa
      301 ggacatggtg gacatgcgcg agagcaaccg cctgagcttc aaccgcggcg aagccttcga
      361 aaccgtcagc agccacgacg tcattctcgc cgaggccatc gttggccgcg gctcccgcta
      421 cagcaaccgc cccatgcgcg acctcgacct caccgcccgc tacggcatcg ccgtgctggc
      481 cgtacatcgt caggacgaga acgtctccgg caacctggac gacttccacc tgcagttcgg
      541 cgacgtgatg ctggtggagg gcacgccggc gcagatcaag cgcttcgccg acaacggcga
      601 gctgatcagc ctcaacaccg tgcaggagcg cgcctaccgc cgcgacaagg cgcccatcgc
      661 catcgtcgcc acgttggcgg taatgctgct ggcggccttc gaggtgatgc ccatcgaggg
      721 gctggcgatg atcgcctgcg ccgtagtgat cgccacccgc tgcctggacg tggaagatgc
      781 ctacaaggcg gtcgactgga agattctcag cctgatcttc ggcatgctgg ccatcagcat
      841 cgccatgggc aaggtcggcc tgatcgacct gatcgtcagt cacaccatga gcgcactgcc
      901 ccacgccagc ccgctgctga tactcggttt cgtctatctg ctgaccacct gcctcaccga
      961 gctcctgtcg aacaatgccg tggcggtcct ggtcacgccg gtagccatcg gcatcgccca
     1021 gagcctgggg ctggacccgc gcccgttcgt ggtcgcggtg atgttcgccg ccagcgtcag
     1081 cttcgccacg cccatcggct accagaccaa caccttcgtc tacaacgccg gcggttaccg
     1141 cttcagcgac ttcatgcgca tcggcatccc gctgaacatc ctgatggtcg gcgtcgccat
     1201 gatcgtcatt ccgctgatct ggccgctggt gcccgcctga cgcctgcctt gcaatgggcc
     1261 atgctcgact ccagatagag gccaccgcca cctggagtcg atcatgagcg agcccctgct
     1321 gatcccctgc ccggcctgca acggcctcaa ccgcatcccg gccgagcgcc tggccgatgc
     1381 gccgcgctgc ggccgctgca agagcgcggt gctgccgggc acacccttcg agctcaacca
     1441 ggcgtccttc gccgcccagc tcaggggcga tctgccgctg ctggtcgatg tctgggccga
     1501 ctggtgcggg ccgtgcaagg ccttcgcgcc gacgttccag caggccgcca gccagctgca
     1561 gggccgctgc cgcctgggca agctggacag cgaggccaac ccgcaactgg ccggtcagct
     1621 cggcatccgc tccatcccca gcctgatcct gttccgcggc ggcgtggaag tggcccgcca
     1681 ggccggcgcc ttgccgctgc cgcagctgct cgcctggctg cgcagccagg gcatcgcctg
     1741 agcggatcgg tcagcggcgg cgagcgccgc ggtcattgcc ggcgcggcac cagcggctag
     1801 tctc
//
LOCUS       DATIHC010000260         1848 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19371, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000260 DATIHC010000000
VERSION     DATIHC010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1848
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19371"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..552)
                     /locus_tag="VLF16_04130"
     CDS             complement(<1..552)
                     /locus_tag="VLF16_04130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HSX70101.1"
                     /translation="MSAFQEYFDESHQLVRDSVRRFIEREVLPHVADWEEAEEFPREL
                     YRKAGAAGILGIGYPEQYGGSHEGDLFAKVAASEELMRSGSGGLVAGLGSLDIGLPPV
                     LKWAKPALRERVVPEVLAGEKIMALAVTEPSGGSDVANLKTRAVRDGDFYRVSGSKTF
                     ITSGVRADYYTVAVRTGGESFGGV"
     gene            complement(612..1106)
                     /locus_tag="VLF16_04135"
     CDS             complement(612..1106)
                     /locus_tag="VLF16_04135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013715191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4157 domain-containing protein"
                     /protein_id="HSX70102.1"
                     /translation="MEICLASCICVPDMEQVRERVLGSASVTLERWILQSRDTALMAG
                     TLPMPLEIRARLSPYYDSDLLDTVRYRVGALDELDVASTMLQNPDIKAVTLVDVVVFR
                     SQEAAEQDTGLWAHELFHAKQYREWGSTGFAQRYTRDFEAVEQPAYAMQIRVMQALLR
                     PKKP"
     gene            1318..1722
                     /locus_tag="VLF16_04140"
     CDS             1318..1722
                     /locus_tag="VLF16_04140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70103.1"
                     /translation="MQTFRIILCVLLLAGCATVEYQPRAISEREAYAVITEVANQQTA
                     ATYLDSRFLGFRDEADAATGTPQDIRERIYFSSLDSIELRRHGPDYRVRLSGPGGDTL
                     REFRIADREQAERFVDALAHYRDNAPAFTGLK"
     gene            complement(1715..>1848)
                     /locus_tag="VLF16_04145"
     CDS             complement(1715..>1848)
                     /locus_tag="VLF16_04145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015278957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HSX70104.1"
                     /translation="GRVLIAALGLAIAVLSVTGIVIWWRKQRARRSAGRRAEAAVLT"
BASE COUNT          322 a          629 c          608 g          289 t
ORIGIN      
        1 gacgccgccg aaactttcgc cgccagtgcg cacggccacg gtgtagtagt cggcgcgcac
       61 gccgctggtg atgaaggtct tgctgccgct gacgcgatag aagtcgccat cgcgcacggc
      121 gcgggtcttg aggttggcca catcggagcc gccggagggt tcggtcacgg ccagggccat
      181 gatcttctcg ccggccagca cttcgggcac cacgcgctcg cgcagcgccg gcttggccca
      241 cttgagcacc ggcggcaggc cgatatccag cgagccgagg ccggcgacca ggccaccgga
      301 gccggagcgc atcaactctt cgctggccgc caccttggcg aacaggtcgc cctcgtggct
      361 gccgccgtac tgctccgggt agccgatgcc gagaatgccc gcggcaccgg ccttgcggta
      421 cagctcgcgg ggaaattcct cggcctcctc ccaatccgcc acgtgcggca ggacctcgcg
      481 ctcgatgaaa cgacgcaccg aatcgcggac cagttgatgg gattcgtcga agtattcctg
      541 gaaggcggac atgcgggtgg ctcccgtttt tgtttgcgcc accctaaccg agcgcttgct
      601 tggttttcaa gtcatggctt cttcggtctg agcaacgcct gcatcacccg gatctgcatg
      661 gcataggccg gctgctccac ggcctcgaag tcgcgggtgt agcgctgggc gaagccggtc
      721 gaaccccact cgcggtactg cttggcgtga aacagctcgt gggcccagag accggtgtcc
      781 tgctcggcag cctcctggct gcggaacacc accacatcga ccagcgtcac cgccttgata
      841 tccgggttct gcagcatggt gctggccaca tccagctcgt cgagcgcacc gacgcgatag
      901 cgaaccgtgt cgagcaggtc gctgtcgtaa tagggcgaca gccgtgcgcg gatttccagc
      961 ggcatcggca gggtcccggc catcagggcg gtatcgcgcg actgtaggat ccagcgctcg
     1021 agcgtcaccg aggccgagcc gaggacccgc tcgcggacct gctccatgtc gggcacacag
     1081 atgcaactgg cgaggcagat ttccatctgc cccaccgggc aggcggcaga agcaccgaac
     1141 ggcgctccca ggacgaggag cagcacggcg cggcgaacaa gagcaggaat cacggatttt
     1201 ccagggagta gttcgggggg gaagcggtgg gtcgccatca tggcagcgga tggcggcgca
     1261 cgccatgacc ggcaagggga gccggcattt cccgaatgcg ctgcagggag agcaacgatg
     1321 cagaccttcc gcatcattct gtgtgtcctg ctgttggcag ggtgtgcaac ggtcgaatac
     1381 cagcctcggg ccatttccga acgcgaggcc tacgcggtga tcaccgaggt ggcgaaccag
     1441 cagaccgccg ccacctacct cgacagccgc ttcctcggct ttcgcgacga ggccgatgcc
     1501 gccaccggca cgcctcagga catccgcgag cgaatctact tcagctcact cgacagcatc
     1561 gagctgcgtc gccacggccc ggattaccgg gtacgcctga gcggcccggg cggcgacacc
     1621 ctgcgtgagt tccgcatcgc cgatcgcgag caggcggagc gatttgtcga cgccctcgcc
     1681 cactatcgcg acaacgcgcc ggcctttacc gggctcaagt gagcacagca gcttcggcgc
     1741 ggcgcccggc agagcgccgc gcacgctgct tgcgccacca gatgacgatg ccggtgacgc
     1801 tgagcacggc gatggccagc cccagcgcgg cgatcagcac ccgcccgg
//
LOCUS       DATIHC010000261         4364 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19375, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000261 DATIHC010000000
VERSION     DATIHC010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4364)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4364)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4364
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19375"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(86..823)
                     /locus_tag="VLF16_04150"
     CDS             complement(86..823)
                     /locus_tag="VLF16_04150"
                     /EC_number="2.4.2.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015277414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5'-thioinosine phosphorylase"
                     /protein_id="HSX70105.1"
                     /translation="MTTYAIIGGTGLTQLEGLTLKQAQNIDTPFGVPSAPVLSGEYAG
                     HEVLFLARHGHPHRIPPHQVNYRANLWALKQAGAEAIIAVNAVGGIHAAMGSGHLCVA
                     HQVIDYTWGRAHTFFEGEIDHVTHIDFSYPYDEELRGRLIAALQACGYPHSSHGVYGA
                     TQGPRLETVAEIARMERDGCDIVGMTGMPEAALARELELPYACLALVVNPAAGKSSGI
                     ITMAEIEAELARGIDKVRAVLGQVLSD"
     gene            complement(834..1832)
                     /gene="nagZ"
                     /locus_tag="VLF16_04155"
     CDS             complement(834..1832)
                     /gene="nagZ"
                     /locus_tag="VLF16_04155"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HSX70106.1"
                     /translation="MFGSLMLDIHGTWLTAEDRRILRQPEVGGLILFARNIEDPRQVR
                     ELCASIRAIRPDLLLAVDQEGGRVQRLRNGFVRLPAMRALADNADAEQLAEHCGWLMA
                     TEVLAVGLDLSFAPVLDLDHQRSAVVGSRSFEGDAELATRLAGAFIRGMDAAGMAATG
                     KHFPGHGWAEADSHVAIPVDERSLDQIRAKDLIPFQRLSQQLAAVMPAHVIYPQVDAG
                     PAGFSRRWLQEILRGELGFDGVIFSDDLSMAGAHVVGDAASRIEAALNAGCDMGLVCN
                     DRASAELALGALQRLKVQPPKGLARMRGRGFARTDYREQPRWLQAVAALRAAQLID"
     gene            complement(1852..2376)
                     /locus_tag="VLF16_04160"
     CDS             complement(1852..2376)
                     /locus_tag="VLF16_04160"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HSX70107.1"
                     /translation="MRSLDLLHISIADQRLYGFADGQLVVRLPVSTALNGAGEKSGSN
                     CTPRGHHQVRAKIGEGLPLGAVLRGRRWTGEVWSEGLDAQFPGRDWILTRILWLSGCE
                     PGINRLGKVDTFRRYIYLHGTPDTQPMGVPLSHGCVRLRNADLLDLFSRVPPHCAVMI
                     DEAPCPQWATADLA"
     gene            complement(2417..3124)
                     /locus_tag="VLF16_04165"
     CDS             complement(2417..3124)
                     /locus_tag="VLF16_04165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019470228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HSX70108.1"
                     /translation="MAQSETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNY
                     HFGSKKALIQAVFSRFLGPFCISLERELDRRQAKPDAKPSLEELLEMLVEQALAVKPR
                     SGNDLSIFMRLLGLAFSQSQGHLRKYLEEMYGKVFRRYMLLLNEVAPRLPPLEIFWRV
                     HFMLGAAAFSMSGIKALRAIAENDFGVDTSIEQVMRLMVPFLAAGMRAESGVSDEALA
                     TAQFKPRTKAQAAAKAV"
     gene            3366..3977
                     /gene="lexA"
                     /locus_tag="VLF16_04170"
     CDS             3366..3977
                     /gene="lexA"
                     /locus_tag="VLF16_04170"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HSX70109.1"
                     /translation="MLKLTPRQSEILAFIKRCLEDNGYPPTRAEIAQELGFKSPNAAE
                     EHLKALARKGAIEMTPGASRGIRIPGFDPVAAEEEGLPVIGRVAAGAPILAQQNVEDS
                     CKINPEFFHPKADYLLRVRGMSMKDIGILDGDLLAVHTTREARNGQIVVARIDDEVTV
                     KRFQRSGNKVQLIAENPEFAPIEIDLEEQDLVIEGLSVGVIRR"
     gene            3994..>4364
                     /gene="sulA"
                     /locus_tag="VLF16_04175"
     CDS             3994..>4364
                     /gene="sulA"
                     /locus_tag="VLF16_04175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005765051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA];
                     GO_process: GO:0051782 - negative regulation of cell
                     division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SOS-induced cell division inhibitor SulA"
                     /protein_id="HSX70110.1"
                     /translation="MQFPQSLTRSQLPLFEAFLGNSLAPLLDETVENPWIDEPEPFSE
                     LRLSGPLGNCRHLLGPVLRELSLNKDARWLTLIAPPASITNAWLRSAGLDLDRLLVLQ
                     PRAGQDALELAREALRLGRSHT"
BASE COUNT          785 a         1477 c         1396 g          706 t
ORIGIN      
        1 cggtgaaagt cacccagccc tgattgtcag cgcagcgatg aaaaagcccc gcgatgcggg
       61 gcttttttgt ttctggcctc caggctcaat cgctcagcac ctgccccagc acggcgcgca
      121 ccttgtcgat accgcgggcc agctccgcct cgatctcggc catggtgatg atgccgctgg
      181 acttgcccgc cgccgggttc accaccagtg ccaggcaggc gtagggcagc tccagttcgc
      241 gcgccagggc ggcttccggc atgccggtca tgccgacgat gtcgcagcca tcgcgctcca
      301 tgcgggcgat ctccgccacc gtttccaggc gcgggccctg ggtggcgccg tacacgccgt
      361 ggctgctgtg cgggtaaccg cacgcctgca gcgcggcgat cagcctgccg cgcagttcct
      421 cgtcataggg atagctgaag tcgatatggg tgacatggtc gatctcgccc tcgaagaagg
      481 tatgcgccct gccccaggtg tagtcgatca cctggtgcgc tacgcacagg tggccgctgc
      541 ccatggccgc gtggatgcca cccaccgcgt tgaccgcgat gatcgcctcg gcgccggcct
      601 gcttcagcgc ccacaggttg gcgcggtagt tcacctggtg cggtggaatg cgatgcggat
      661 gtccgtggcg agccaggaac agcacctcat ggccggcgta ctcgccgctc agcaccggcg
      721 ccgagggcac gccgaagggc gtatcgatgt tctgcgcctg cttgagggtc aggccttcca
      781 gctgggtgag gccggtgccg ccgatgatgg cgtaggtggt catgcgttat tccttaatca
      841 atcaactgcg ccgcgcgcag agccgcgacg gcctgcagcc agcgcggctg ttcgcgatag
      901 tcggtacgag cgaaaccgcg cccacgcatg cgcgccaagc ccttgggcgg ctgtaccttg
      961 aggcgctgca gggcgccgag ggccagttcg gcggaggcgc ggtcgttgca caccaggccc
     1021 atgtcgcagc cggcattcag cgccgcctcg atgcggctgg cggcatcgcc gaccacatgg
     1081 gcgccggcca tggacaggtc gtcgctgaaa atcacaccgt cgaagcccag ctcgccacgc
     1141 aggatctcct gcagccagcg ccgcgagaag ccggccgggc cggcgtccac ctgcggatag
     1201 atgacgtggg ccggcatcac cgccgccagc tgctggctca ggcgctggaa cgggatcagg
     1261 tccttggcgc gaatctggtc caggctgcgc tcgtccaccg gaatagccac gtgggagtcg
     1321 gcctcggccc agccatggcc ggggaagtgc ttgccggtgg cggccatgcc cgccgcatcc
     1381 atgccgcgga tgaaggcgcc ggccaggcgt gtagccagct cggcgtcgcc ctcgaagctg
     1441 cggctgccga ccacggcgct gcgctggtgg tccaggtcca gcaccggggc gaagctgaga
     1501 tccaggccca cggccagcac ttcggtggcc atcagccagc cgcagtgctc ggccagctgc
     1561 tcggcgtcgg cgttgtcggc cagggcgcgc atggccggca ggcgcacgaa gccgttgcgc
     1621 aggcgctgta cgcgaccgcc ctcctgatcc accgccagca gcaggtccgg gcggatggcg
     1681 cggatggacg cgcagagctc gcgcacctgg cgcggatctt cgatgttgcg ggcgaacagg
     1741 atcagcccgc ccacctcggg ctggcgcaga atccggcggt cctcggcggt cagccaggtg
     1801 ccgtggatgt ccagcatcag ggaaccaaac agggtcgtca cagaagcgtc cttaagcgag
     1861 atcggccgtc gcccactgcg ggcacggcgc ctcgtcgatc attaccgcgc agtgcggcgg
     1921 tacacgggaa aagagatcca gcaggtcggc gttgcgcagg cgcacacagc cgtgggacag
     1981 cggcacgccc atgggctggg tatccggcgt gccgtgcagg tagatatagc ggcggaaggt
     2041 atcgacctta cccaggcgat tgatgcccgg ctcgcagccg ctcagccaga ggatgcgggt
     2101 gagaatccag tcgcggccgg ggaactgtgc gtccagcccc tcggaccaga cctcgccggt
     2161 ccagcgccgc ccacgcaata ccgcgccgag cggtagcccc tcgccgatct tcgcgcgcac
     2221 ctgatgatgc ccgcgcggcg tgcagttgga gccgcttttc tcgccggcac cattcagcgc
     2281 ggtggaaacc ggcaggcgca cgaccagctg cccgtcggcg aagccgtaca ggcgctgatc
     2341 agcgatggag atatgcagga gatcgagcga gcgcatgggc cgctagctta gcccatcggc
     2401 ctgcccgggc acagcgtcag acggccttgg cggctgcctg agccttcgtc cgcggcttga
     2461 actgagcggt ggccagcgcc tcgtcgctca ccccgctctc ggcacgcatg ccggcagcga
     2521 ggaacggcac catcaggcgc atgacctgct cgatcgaggt gtccacgccg aagtcgttct
     2581 cggcgatggc gcgcagcgcc ttgataccgg acatgctgaa cgccgcggcg ccgagcatga
     2641 agtgcacgcg ccagaagatc tccagcggcg ggagcctggg cgccacttca ttgagcaaca
     2701 gcatgtatcg acggaagacc ttgccgtaca tctcttccag atatttgcgc aggtggccct
     2761 gactctggct gaaggccagg ccgagcagac gcatgaagat ggacaggtcg ttgccgctgc
     2821 gcggcttcac cgcgagcgcc tgttccacca gcatctccag cagctcttcc agactgggtt
     2881 tggcgtccgg cttggcctga cgacgatcca actcccgctc gagactgatg cagaacggcc
     2941 cgaggaagcg cgagaacacc gcctggatga gggccttctt ggagccgaag tgataattga
     3001 cggccgccag gttgacccct gccttgctag tgatcagccg tagagaggtc tcggcgaaac
     3061 ccttctccgc gaacagctgc tcggcagcat ccaaaatgcg ctcaacggtt tctgattgag
     3121 ccatgacatc ctcacctgac aaacacttgt ttgaaacata cgtttcaggc taccgccctg
     3181 tcaagcctga cggggccttt catggctgac cggtcacgca tttaaccaca ggtcatccag
     3241 gcgcaaacgc tgcctgctat ggcaggcgga ggaatgaccg ttttgccctg tgccggaata
     3301 agtgttgcca gcatcgaatc actgtatata atcccagcaa ctgtataaac agacagacca
     3361 ccagcatgct caaactgacg ccgcgacaat ccgaaatcct cgccttcatc aagcgctgcc
     3421 tggaagacaa cggctatccg ccgacccggg ccgagatcgc tcaggagctg ggcttcaagt
     3481 cgcccaacgc cgctgaggaa cacctcaagg cactggcccg caagggcgcg atcgaaatga
     3541 cgcctggcgc ttcccgcggc atccgcattc ccggcttcga ccccgtcgcc gccgaagaag
     3601 aaggtctacc ggtgatcggc cgagtcgccg ccggtgcccc gattctcgct cagcagaacg
     3661 tggaagactc ctgcaagatc aacccggagt tcttccaccc caaggccgac tatctgctgc
     3721 gcgtgcgcgg catgagcatg aaggacatcg gcatcctcga cggcgatctg ctggccgtgc
     3781 acaccacccg cgaggcccgc aatggccaga tcgtcgtcgc acgcatcgat gacgaagtca
     3841 ccgtcaagcg cttccagcgc agcggcaaca aggttcagct gatcgccgag aacccggagt
     3901 tcgctcccat cgagatcgat cttgaagaac aggacctggt gatcgaaggc ctgagtgtcg
     3961 gcgtaatccg ccgctgaaac cgaggagaga ctcatgcagt tcccgcagtc gctgacccgc
     4021 tcgcaacttc cgctgttcga agcctttctc ggcaacagcc tggcaccact gctcgacgag
     4081 acggtagaga atccgtggat cgacgagccc gagcccttca gcgagctgcg cctctccggg
     4141 ccactcggca actgccgtca cctgctcggc ccggtactgc gtgaactcag cctgaataaa
     4201 gacgcccgct ggctgacact gatcgcgccg cccgcctcga tcaccaacgc ctggctgcgc
     4261 agcgcgggac tcgatctgga tcgcctgctg gtactgcaac cgcgcgccgg acaagacgcc
     4321 ttggaactgg cccgcgaagc gctgcgcctg gggcgcagcc acac
//
LOCUS       DATIHC010000262         1667 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33413, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000262 DATIHC010000000
VERSION     DATIHC010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1667
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33413"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..121
                     /locus_tag="VLF16_04180"
     CDS             <1..121
                     /locus_tag="VLF16_04180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003242381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSX70111.1"
                     /translation="IAFLVGFSEAGSLARAFRRWTGQSPGAYRQSLLDSAAHS"
     gene            132..464
                     /gene="cyaY"
                     /locus_tag="VLF16_04185"
     CDS             132..464
                     /gene="cyaY"
                     /locus_tag="VLF16_04185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012703233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HSX70112.1"
                     /translation="MSLSEARFHDLVDAAQQAVEDIFDDSDLDLDLENSAGVLTVRFE
                     NGSQLILSRQEPLRQLWVAARSGGFHFDYDAEQGLWICDTSDEPLGELLARVTREQAG
                     EELEFDEL"
     gene            436..639
                     /locus_tag="VLF16_04190"
     CDS             436..639
                     /locus_tag="VLF16_04190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009614046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1289 domain-containing protein"
                     /protein_id="HSX70113.1"
                     /translation="MKSSSSTNSEAVESPCRRQCCLDDEDVCLGCGRTLAEILEWGRA
                     DGERRRDICQAAQQRLRPSPLSP"
     gene            775..1182
                     /gene="rnk"
                     /locus_tag="VLF16_04195"
     CDS             775..1182
                     /gene="rnk"
                     /locus_tag="VLF16_04195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003458551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside diphosphate kinase regulator"
                     /protein_id="HSX70114.1"
                     /translation="MSSTPAIIITRLDLQRLERLLDSLEDFGPTAEALETELARAQVV
                     GLDEVPAGVVTMNSRVHCREEGSGKDYHLTLVFPEDAGGEGRVSVLAPVGAALLGLSV
                     GQQIDWPGPAGKPLRLTLLAVEYQPEAAGEYQR"
     gene            complement(1179..1409)
                     /locus_tag="VLF16_04200"
     CDS             complement(1179..1409)
                     /locus_tag="VLF16_04200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70115.1"
                     /translation="MQISPSRALVLSLLLALINGPALVGNGKITGGGVARTIETNQKL
                     ARNLELEEQLRRGSDTPPGGDPDCPPAPFMLA"
     gene            complement(1412..1597)
                     /locus_tag="VLF16_04205"
     CDS             complement(1412..1597)
                     /locus_tag="VLF16_04205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70116.1"
                     /translation="MARLIRKHADSGALAGFGVLAIAASILLALTLGSAGALEAHATP
                     NLAQALQGLLSAIRVGG"
BASE COUNT          252 a          557 c          596 g          262 t
ORIGIN      
        1 aatcgccttc ctggtcggct tcagcgaggc cggctcgctg gcccgcgcct tccgccgctg
       61 gaccgggcag agccccggcg cgtaccggca aagtctgcta gattccgctg cccattcctg
      121 aggaccccgc gatgagtttg agcgaagccc gtttccacga tctggtcgat gccgcccagc
      181 aggcggtgga agacattttc gatgacagcg acctggacct cgatctggaa aacagcgccg
      241 gcgtgctcac cgtgcgtttc gagaacggca gccagctgat cctcagccgc caggagccgc
      301 tgcgtcagct ctgggtggcg gcgcgctccg gcggcttcca tttcgactac gacgcggagc
      361 agggcctgtg gatctgcgac accagcgacg agccgctggg cgaactgctg gcccgggtca
      421 cccgcgagca ggccggtgaa gagctcgagt tcgacgaact ctgaggccgt cgagtcgccc
      481 tgccggcgcc agtgctgcct ggacgacgag gacgtgtgcc tgggctgcgg ccgcaccctg
      541 gccgagatcc tcgagtgggg cagggcggac ggcgagcgcc gccgcgacat ctgccaggcg
      601 gcgcagcagc gcctgcggcc gtcgcccctg agcccctgag cgtgcgccca tgacccggcg
      661 gtcttgctaa ttgccgggta tgtgcgtagg gtcggccgaa gctgactaac cgatcaaaac
      721 cccgccctcg ggcggggttt tgctttatct ggcccaagga ggaataccca cgtcatgagc
      781 agcacccccg ccatcatcat cacccgtctc gacctgcagc gcctggagcg cctgctcgac
      841 agcctagagg acttcggtcc gaccgccgag gcgctggaaa cggagctggc gcgcgcccag
      901 gtggtggggc ttgacgaggt gcccgccggg gtggtgacca tgaactcgcg ggtgcactgc
      961 cgcgaagagg gcagcggcaa ggattaccac ctgacgctgg tgtttcccga ggacgccggc
     1021 ggcgagggac gggtctcggt gctggcgccg gtgggcgctg ccctgctcgg gctctcggtg
     1081 ggccagcaga tcgactggcc cggcccggcc ggcaagccgc tgcggctgac cctgctggcc
     1141 gtggaatacc agccggaggc ggccggcgag taccagcgct aggccagcat gaacggcgcc
     1201 ggcgggcagt ccgggtcgcc cccgggcggt gtgtcgctgc cgcgccgcaa ctgttcctcc
     1261 agttccagat tgcgggcgag cttctgattg gtctcgatgg tgcgcgccac gccgccaccg
     1321 gtgatcttgc cgttgccgac cagggccggg ccgttgatca gggcgaggag cagcgaaagc
     1381 accagcgccc gggatgggga gatctgcatg gctagccccc cacccggatg gccgagagca
     1441 gtccctgcag ggcctgcgcc aggttcggcg tggcatgtgc ctccagggcg ccggcgctgc
     1501 ccagggtcag cgccagcagg atgctggcgg cgatcgccag cacgccgaag ccggcgagtg
     1561 cgccactgtc tgcgtgcttg cgaatgagcc tggccatgcc gctgtccccg gggaggttgc
     1621 tggaatgggg aaagcttcac tcaggccgtt tcgattgaat aatggtc
//
LOCUS       DATIHC010000263         1928 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42740, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000263 DATIHC010000000
VERSION     DATIHC010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42740"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..703
                     /locus_tag="VLF16_04210"
     CDS             <1..703
                     /locus_tag="VLF16_04210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HSX70117.1"
                     /translation="YNADCSLAPVLVFLNDHRAATLKRAVGVVEEFAKDNNTDNLQFM
                     LAAGNAGIEAATNEVIATAELKILILVYICVAVMCLITFRSFGAMLCIILPLILTSIL
                     GNALMAWLGIGVKVATLPVIALGVGIGVDYGIYIYSRLESFLRAGMPLQEAYYETLRS
                     TGKAVLFTGLCLAIGVVTWIFSAIKFQADMGLMLTFMLLWNMFGALWLLPALARFLIK
                     PEKLAGKKGGSLFAH"
     gene            complement(1329..>1928)
                     /locus_tag="VLF16_04215"
     CDS             complement(1329..>1928)
                     /locus_tag="VLF16_04215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HSX70118.1"
                     /translation="AVADVLLADGQGGDLLNGYVDGFKASWLYDELFCSRNFGAAIHK
                     FGVLAGAAFNFIDQNIFGGKIPVTLHDNKPDHACLKTAAESKRIDYPKPDGKLSFDKL
                     SSVFLSNTNHEEEQPCHLKLADASIPINVNLPKYDEPAQRYCPAGVYEVVTQEDGEKR
                     FQINAQNCVHCKTCDIKDPAQNITWVAPEGTGGPNYPNM"
BASE COUNT          298 a          575 c          649 g          406 t
ORIGIN      
        1 gtataacgcc gactgctcgc tggcaccggt gctggtgttc ctcaacgacc acagggctgc
       61 gacgttgaag cgcgccgtcg gcgtggtgga agagttcgcc aaggacaaca acacggacaa
      121 cctgcagttc atgctcgccg ccggtaacgc cggtatcgag gccgcgacca acgaggtgat
      181 cgcgaccgcc gagctgaaga tcctgatcct ggtgtacatc tgcgtcgccg tgatgtgcct
      241 gatcaccttc cgctccttcg gtgccatgct gtgcatcatc ctgccgctga tcctcacctc
      301 catcctgggc aacgccctga tggcctggct gggcatcggc gtgaaggtgg cgaccctgcc
      361 ggtaatcgcg ctcggcgtgg gcatcggcgt ggattacggc atctacatct acagccgcct
      421 ggagagtttc ctgcgtgccg gcatgccgct gcaggaggcc tactacgaga ccctgcgctc
      481 caccggtaag gccgtgctgt tcaccggcct gtgcctggcc attggcgtgg tcacctggat
      541 cttctcggcg atcaagttcc aggccgacat gggtctgatg ctgaccttca tgctgttgtg
      601 gaacatgttc ggtgcgctgt ggctgctgcc ggcactggcc cgcttcctga tcaagccgga
      661 gaagctggcc ggcaagaagg gcggttcgct gttcgctcac tgatcggcac cgtgcactac
      721 gaaagggctc cctcgggagc ccttttcttt tgtcggattt ccattcgatg ctgggtggat
      781 gagttgtgga gggggcgctt gctatggtca ggtgcgctgc ccattggcgg gctgccgctg
      841 cgcggcgagg ccgccctacc tgtcgctcgg tgccgtctga ccatgaggta gggtggcctc
      901 ggagcgtagc gaacagtcca ccggtcggtg tttagatgag cgcgttaggc gggctgccgc
      961 tacgcggcga ggccgcccta catgttgctc ggtgccgcct gacctcgacg tagggtggcc
     1021 tcggagcgca gcgaacaatc caccagtcgg tgttcagagg agcgcgttag gcgggctgcc
     1081 gctgcgcggc gaggccgcgc tacgagtcgc ttggtgtcgt ctggccgcga ggtacggggc
     1141 ctcggagcgt agcgacagtc caccggtcgg tgctcagagg agcgcgttag gcgggctggc
     1201 cgctacacgg tgcggctacc ctacaaactt gctagagagg cgagcggagc gagttggcta
     1261 cggctctttt agacgattta caggcatgaa aaagccgcct tgcggcggct tcttctgtcc
     1321 ggctcgaatt acatgttggg gtagttcggg ccgccggtgc cttccggagc cacccaggtg
     1381 atgttctggg ccgggtcctt gatgtcgcag gtcttgcagt ggacgcagtt ctgcgcgttg
     1441 atctggaagc gcttctcgcc gtcttcctgg gtcaccacct cgtacacgcc ggccgggcag
     1501 tagcgctgcg ccggttcgtc gtacttcggc aggttgacgt tgatcgggat gctcgcatcg
     1561 gccagcttca ggtggcaggg ctgctcttcc tcgtggttgg tgttggagag gaacaccgag
     1621 gagagcttgt cgaagctcag cttgccgtcc ggcttcgggt agtcgatgcg cttggactcg
     1681 gccgcggtct tcaggcaggc gtgatccggc ttgttgtcgt gcagggtgac cgggatcttg
     1741 ccgccgaaaa tgttctggtc gatgaagttg aaggcagcgc cggccaaaac accaaactta
     1801 tggatcgctg cgccgaagtt gcggctgcag aacagctcgt catacagcca gctggccttg
     1861 aagccgtcca cgtaaccgtt gagcagatct ccgccctggc cgtcggccag cagcacgtca
     1921 gccacggc
//
LOCUS       DATIHC010000264         3181 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5552, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000264 DATIHC010000000
VERSION     DATIHC010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3181
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5552"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..214
                     /locus_tag="VLF16_04220"
     CDS             <1..214
                     /locus_tag="VLF16_04220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013789735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSX70119.1"
                     /translation="GLERQQQLANPEEIALIAMRGLERNRAIIIPGWRHRLLPQLLRL
                     TPRALVRRIAMRMVRPLLPRTGADQA"
     gene            complement(237..1718)
                     /locus_tag="VLF16_04225"
     CDS             complement(237..1718)
                     /locus_tag="VLF16_04225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSX70120.1"
                     /translation="MKNDVHDLGLVLESRVKLVVIESWDEPRVLETLTSLAIKRGLGI
                     YTWAVTEGLQRLGFGGEPVGELDSREPEQALRLIKADPTPNLYVMCDLHPFMVDNPTL
                     VRLLKEIAMSEAPHKPTLVLVSHGLKLPAEVQRYAARFSLALPTEEELLAIVREEATR
                     WSERNRGARVRTDNRTLQQVVKNLRGMSHAEARALARNLICDDGAITQEDLPELNKAK
                     FQLLDLEGVLSFEHDTARFAEVGGLANLKRWLGERQEIFAGGKGVDLPRGMLLVGVQG
                     GGKSLAAKAVAGLWGLPLLRLDFASLYNKFFGETERNLREALKMAEQMAPCVLWMDEI
                     EKGLATGSNDDGVSQRVLGTLLTWMAERKAPVFMVATANAIDRLPPELVRKGRFDELF
                     FVDLPDAEVRAEIFAIHLRRRELDPAQFDLPALAVACDGFSGAEIEQVVVSALYAAQA
                     RQQAVDQALLLTHIQGTAPLSVVMAERLASLRAWADGRTVNAG"
     gene            1787..2125
                     /locus_tag="VLF16_04230"
     CDS             1787..2125
                     /locus_tag="VLF16_04230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HSX70121.1"
                     /translation="MDCLFCRIVAGEIPARTFYEDDRVLAFHDIGPQAPVHFLVIPRR
                     HIASLDQLTEDDRSLAGHILYTAQRLATELGCEAGFRLVMNCKELGGQTVHHIHMHVL
                     GQRQLHWPPG"
     gene            2241..2888
                     /gene="coq7"
                     /locus_tag="VLF16_04235"
     CDS             2241..2888
                     /gene="coq7"
                     /locus_tag="VLF16_04235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone
                     monooxygenase"
                     /protein_id="HSX70122.1"
                     /translation="MTNERQFSPLDRLLMQADAAMRTLLPFSGAPARPSPAILQNASE
                     LSDDEARHVAGLMRINHTGEVCAQALYQGQALTAKLPEVRKAMEHAADEEVDHLAWCE
                     QRIRELGSHPSVLNPLFYGLSFGVGAVAGLISDKVSLGFVAATEDQVVKHLDEHLEQI
                     PADDAKTRAILEQMREDEQQHSTSALEAGGLRFPAPVKLGMSLLSKVMTKSTYRI"
     gene            complement(3016..>3181)
                     /locus_tag="VLF16_04240"
     CDS             complement(3016..>3181)
                     /locus_tag="VLF16_04240"
                     /EC_number="4.1.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249345.1"
                     /note="S-adenosylmethionine provides the aminopropyl
                     moiety required for spermidine biosynthesis from
                     putrescine; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="S-adenosylmethionine decarboxylase"
                     /protein_id="HSX70123.1"
                     /translation="ENLFHTKMLLKQFDLDNYLFGDATSNLTAEQRKQVEERVRHEML
                     EIFYARNMPR"
BASE COUNT          528 a         1128 c         1012 g          513 t
ORIGIN      
        1 cggcctggag cgccagcagc aactggccaa tcccgaggaa atcgcgctga tcgccatgcg
       61 cggcctggag cgcaaccgcg ccatcatcat ccccggctgg cgccaccgcc tgctgcctca
      121 gctgctgcgc ctgacgccgc gggcgctggt acgacgcatc gccatgcgca tggtacgccc
      181 gctgctgcca cgtacgggtg ccgatcaggc ctagcgggcc gctgaaaaac tacctgctaa
      241 ccggcattca ccgtgcgccc gtcggcccag gcacgcaacg acgccaggcg ctcggccatc
      301 accaccgaca gcggcgccgt gccctggata tgggtcagca acaatgcctg gtcgacggcc
      361 tgctggcggg cctgggcggc gtaaagcgcg ctgaccacca cctgttcgat ctccgcgccg
      421 gagaagccgt cgcaggccac cgccagagca ggcaggtcga attgcgccgg gtccagctcg
      481 cggcggcgca ggtggatggc gaagatctcg gcgcgcactt cggcatccgg caggtccacg
      541 aagaacagct cgtcgaaacg ccccttgcgc accagctccg gcggcaggcg gtcgatggcg
      601 ttggcggtgg cgaccatgaa caccggcgcc ttgcgctcgg ccatccaggt cagcagtgtg
      661 ccaagcaccc gctggctgac gccgtcgtcg ttgctgccgg tggccaggcc cttctcgatc
      721 tcgtccatcc acagcacgca gggcgccatc tgctcggcca ttttcagcgc ctcgcgcaga
      781 ttgcgctcgg tctcgccgaa gaacttgttg tacaggctgg caaagtccag gcgcagcagc
      841 ggcagccccc acaggccggc gaccgccttg gccgccaggc tcttgccgcc accctgcacg
      901 ccgaccagca gcatgccgcg cggcaggtcg acgcccttgc cgccagcgaa tatctcctgc
      961 cgctcgccca accagcgctt gaggttggcc aggccaccga cctcggcgaa gcgcgccgtg
     1021 tcgtgttcga agctgagcac gccctccagg tcgagcagct ggaacttggc cttgttcagc
     1081 tccggcaggt cttcctgggt aatcgcgccg tcatcgcaga tcaggttgcg cgccaacgca
     1141 cgcgcctcgg cgtggctcat gccgcgcaga ttcttcacca cctgctgcag ggtgcggttg
     1201 tcggtgcgca cccgcgcgcc gcggttgcgc tcgctccagc gggtggcctc ctcgcggacg
     1261 atggccagca gctcttcctc ggtcggcaac gccaggctga aacgcgcggc gtagcgctgc
     1321 acctcggccg gcagcttgag gccatgggac accagcacca gggtcggctt gtgcggcgcc
     1381 tcgctcatgg cgatttcctt gagcaggcgc accagcgtgg ggttgtcgac catgaacggg
     1441 tgcaggtcgc acatgacgta gagattgggc gtgggatcgg ccttgatcag gcgcagcgcc
     1501 tgctccggct cgcggctgtc caactcgccc accggctcgc cgccgaagcc caggcgctgc
     1561 agcccctcgg tcaccgccca ggtgtagatg ccgaggccgc gcttgatcgc cagcgaggtc
     1621 agggtctcca gcacccgcgg ttcgtcccag gactcgatca ccaccagctt gacgcgggat
     1681 tccagcacca gccccagatc gtgtacgtcg ttcttcacac tcgctccttg tgatgcccgc
     1741 gggcgctatt agactcgcag aatacccaat gccgcggaga gagcccatgg actgcctgtt
     1801 ctgtcgcatc gtcgccggcg agatcccggc acgcacgttc tacgaggacg accgggtgct
     1861 ggccttccac gatatcggcc cgcaggcgcc ggtgcatttt ctggtgatcc ccaggcgcca
     1921 catcgccagc ctcgaccagc tcaccgagga cgaccgcagc ctggccgggc acatcctcta
     1981 caccgcccaa cgcctggcca ccgagctggg ctgtgaggcc ggctttcgcc tggtgatgaa
     2041 ctgcaaggaa ctgggcgggc agacggtgca tcacatccac atgcacgtgc tcggccagcg
     2101 ccagctgcac tggccgcccg gctgagcacc gcaagctgcg ccgcgccggg cagtcgtaga
     2161 gcggcagcgg cctcgcgtcg cgcggttttc tgcccgggca atcaggtaaa ctgccaccga
     2221 tgtttttcgt ggagccggcc atgaccaacg aacgccagtt ttctcccctc gaccgcctgc
     2281 tgatgcaggc cgacgccgcc atgcgcaccc tgctgccgtt cagcggcgcg ccggcgcggc
     2341 cctcgccggc catcctgcag aacgcctccg agctgagtga cgacgaggcc cgccacgtcg
     2401 ccggcctgat gcgcatcaac cacaccggcg aggtctgcgc ccaggcgctg taccagggcc
     2461 aggcgctgac cgccaagctg ccggaagtgc gcaaggccat ggagcacgcc gccgacgagg
     2521 aggtcgacca cctggcctgg tgcgagcagc gcatccgcga gctgggcagc cacccgagcg
     2581 tgctcaaccc gctgttctat ggtctgtcct tcggcgtcgg cgcggtcgcc gggctgatca
     2641 gcgacaaggt cagcctgggc ttcgtcgccg ccaccgagga ccaagtggtc aagcacctgg
     2701 acgagcacct ggagcagatt cccgccgacg acgccaaaac ccgcgccatc ctcgaacaga
     2761 tgcgcgagga cgagcagcag cattcgacca gcgccctgga ggccggaggc ctgcgcttcc
     2821 cggcgccggt caagctgggc atgagcctgc tgtccaaggt gatgaccaag agcacctacc
     2881 gcatctagaa ctggcttaca gtcgcctgat cgtcggccat gccgcgttga aattgggctc
     2941 tagctcagga gaccatagac aggttctaaa aatgaaaaag ggcgccaatc ggcgcccttt
     3001 ttcgttgcgg gaagatcagc gcggcatgtt gcgcgcgtag aagatctcca gcatctcgtg
     3061 gcgtactcgc tcttccacct gcttgcgctg ctcggcggtc agattggaag tggcgtcgcc
     3121 gaacaggtag ttgtccaggt cgaactgctt gagcagcatc ttggtgtgga acaggttctc
     3181 c
//
LOCUS       DATIHC010000265         1696 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5556, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000265 DATIHC010000000
VERSION     DATIHC010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1696)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1696)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1696
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5556"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            253..936
                     /locus_tag="VLF16_04245"
     CDS             253..936
                     /locus_tag="VLF16_04245"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HSX70124.1"
                     /translation="MVLDMQVADTSESAAAAVEKDLRRAIIELELLPGTRLSEQDIAT
                     RLGVSRQPVREALIKLAHSRLIEIRPHRGTVVARISAKEMTEALFVRQSVEDAVVARA
                     AQNFDAWQRKRIATLLVKQEEAAANLDHAAFREHDEAFHIAIATGAGVGIAWVAIADM
                     KTHMDRVCNMTLQGETDMRRRVREHQAIMKAIDEKDVEGARRAMAEHLSSILDALPDL
                     ETRHSTLFV"
     gene            957..>1696
                     /locus_tag="VLF16_04250"
     CDS             957..>1696
                     /locus_tag="VLF16_04250"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012723601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSX70125.1"
                     /translation="MSDFARYPSLAGVPVVISGGASGIGESLVRQFAAQGSKVGFVDI
                     QDERGSALASELTAAGQTALFTLCDITDTQAYQSAIAGFAAAHGDALVLVNNAAHDQR
                     HDWAEVTPSYWDDRMAVNLKHSFFAIQAVAPGMIAAKRGSIINTGSISWMIMSPKLPV
                     YEAAKAAAHGLTRGLARELGQHSIRINTLLPGWVMTERQLTHWVDETAEAQIDANQAL
                     TGRVMPDDVARMALFLASEDSAMISAQQ"
BASE COUNT          311 a          537 c          527 g          321 t
ORIGIN      
        1 caaccatcgc gatggggcgc tgtcgatcct gacaggtatc gcggcaaacg agtcgtttgc
       61 gactggcttg ccggtggatg tgcggggact cgtgcggctc tagccccaca tggtgccaac
      121 tcagtagccc tcatggcctc agtattaggg ctactggatc tggcgctctc acggggcgcg
      181 cattccttgc gccccgcccc cgcctccagt atgcaagcgt atggcgtgga ttagtccatg
      241 cgagggggat ccatggtcct ggatatgcag gttgccgata ccagcgagag cgctgccgcc
      301 gcggtcgaaa aagacctgcg tcgcgctatt atcgagcttg agctgctgcc tggcacacgt
      361 ctttcggaac aggacatcgc cacccgtctc ggcgtctccc gccagccggt gcgcgaggcg
      421 ctgatcaagc tcgcccactc ccgtctgatc gagatccgtc cgcaccgcgg cactgtggtg
      481 gcgcgcattt cggccaagga gatgaccgaa gcgctgtttg tgcgtcagtc agtcgaagac
      541 gctgtcgtcg ctcgggcggc gcagaatttt gatgcctggc aacgcaagcg catcgccacc
      601 ctgctggtca agcaggaaga ggccgctgcc aacctcgacc atgctgcttt tcgcgagcat
      661 gacgaagcct tccacattgc cattgccact ggtgcgggcg tcggcattgc ctgggtcgcg
      721 attgccgaca tgaagaccca catggaccgg gtgtgcaaca tgacactgca gggcgagacc
      781 gatatgcgcc gccgcgtgcg cgagcaccag gcgatcatga aggccatcga cgagaaagat
      841 gtcgagggcg cgcggcgcgc catggcggaa catctgagca gcattctcga cgccctgccc
      901 gatctcgaga cccggcattc tacccttttc gtctagccgc actccggagc tatttgatgt
      961 ctgacttcgc ccgctacccc agccttgctg gtgtgcccgt ggtcatttcc ggtggcgctt
     1021 cgggcatcgg ggaatcgctg gtgcgccaat ttgcggccca gggcagcaag gtggggttcg
     1081 tcgatatcca ggatgagcgc ggctcggcgt tggcaagcga actgaccgcc gctgggcaga
     1141 cggccctgtt cacgctttgc gatattaccg atacccaggc ctatcagtca gcgatcgcgg
     1201 ggtttgcggc ggcgcatggc gatgcgctgg ttctggtcaa taatgccgcg catgaccaac
     1261 gccacgactg ggccgaagtg acccccagct attgggacga ccgcatggcg gtcaatctca
     1321 agcacagttt ctttgccatc caggctgtgg ctccgggcat gatcgctgcc aagcgcggct
     1381 cgatcatcaa taccggctcg atcagctgga tgatcatgtc gcccaaacta ccggtttatg
     1441 aagcggccaa ggcagctgca catgggctga cccgcggcct cgcgcgcgaa ttgggccagc
     1501 acagcattcg catcaacacc ctcctccccg gctgggtgat gacggagcga cagctgaccc
     1561 attgggtcga cgaaacggca gaagcacaga tcgacgcgaa ccaggcgctc accgggcgtg
     1621 tcatgcccga cgacgtggca cgcatggcac tattcctcgc ctcggaagac agcgccatga
     1681 tctcggcgca gcagtt
//
LOCUS       DATIHC010000266         3933 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28751, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000266 DATIHC010000000
VERSION     DATIHC010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3933
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28751"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..150)
                     /locus_tag="VLF16_04255"
     CDS             complement(<1..150)
                     /locus_tag="VLF16_04255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70126.1"
                     /translation="MPVPDSFREGLARGWTTYDGSRLEKDLLLEADVAIIGSGAGGGT
                     TAEILS"
     gene            complement(346..891)
                     /locus_tag="VLF16_04260"
     CDS             complement(346..891)
                     /locus_tag="VLF16_04260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009615182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation pathway signal
                     protein"
                     /protein_id="HSX70127.1"
                     /translation="MTDISNAAPSMSRRGLLKVGLLGGAFLATAGVTASLSGCSASGP
                     AADYAVLRASDLPSLRAIIPVVLEGAVQPDALQAAVDATLQGIDRNLHHLSPELLKLT
                     QQLLDVLAMAVTRGPLTGIWGSWENASADDIRQFLVRWEHSSLDLLRMGHASLLQLIQ
                     MAWYARPQSWAHCGYPGPPQF"
     gene            complement(900..2330)
                     /locus_tag="VLF16_04265"
     CDS             complement(900..2330)
                     /locus_tag="VLF16_04265"
                     /EC_number="1.2.1.68"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050269 - coniferyl-aldehyde dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006081 - cellular aldehyde metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="coniferyl aldehyde dehydrogenase"
                     /protein_id="HSX70128.1"
                     /translation="MVADVAYLQQNQQQIDALEPLLGAQRAAYRANPMPSADQRRAWL
                     KALREAILENKQNLLDAVSRDFSNRAESETLLAEIMPSLQGIDYASKRLGKWMKPSRR
                     HVGVAFQPASARVVYQPLGVVGVIVPWNYPLYLAFGPLIGALAAGNRVMIKMSESTPA
                     TSQLVKELLAKVFPEDMVAVVLGEAEVGMAFSKLPFDHLLFTGATSIGKHVMRAAAEN
                     LVPVTLELGGKSPAIVSADVPLEDAAERIAFGKTMNAGQTCVAPDYVLVPQERVEEFV
                     AAYRKVVQRFYPTLANNPDYTAIINERQLGRLKGYISDAEAKGAQIVPLFPGDQGRRL
                     AHSLVLNVSDEMKLMQEEIFGPLLPIVPYQRLDDAFAYISDRPRPLALYYFGYDKGEQ
                     QRVLHETHSGGVCLNDTLLHVAQDDMPFGGIGPSGMGHYHGHEGFLTFSKAKGVLIKQ
                     RFNAARFIYPPYGTAIQKLIQKLFIR"
     gene            2474..3136
                     /locus_tag="VLF16_04270"
     CDS             2474..3136
                     /locus_tag="VLF16_04270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HSX70129.1"
                     /translation="MAPKNKTRDRIVEASLELFNAQGERSVTTNHIAAHLGISPGNLY
                     YHFRNKQAIIAELFAQYEGRVDTFLRPPSGRALTVADKTFYLEALLAAMWHYRFLHRD
                     LEHLLETDAELAARYRSFASRCMQAAGDIYRGFAAADILAMNDQQIEALVLNSWIILT
                     SWVRFLCTIRSNPGDLSEELMRRGVYQILALESGYVTEAAREAVQALLQRLHVPMDAV
                     VG"
     gene            complement(3133..>3933)
                     /locus_tag="VLF16_04275"
     CDS             complement(3133..>3933)
                     /locus_tag="VLF16_04275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017675865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HSX70130.1"
                     /translation="VLHGLTGSSSSHYVLGLQQQLAARGWASVALNWRGCSGEPNLLP
                     RGYHSGVSEDVVSVVRHLQAQRPLAPLYAVGYSLGGNVLLKYLGESGRDSGLQAAVAV
                     SVPFRLDHCAERIDRGFSKVYQAHFMRALVAYVRDKQQRFTDEGHHERLAALQQLGSL
                     DGMRTFWDFDGRFTAPLHGYADADDYYRRASSHYYLGRIATPTLIIQSSDDPFVFPHS
                     VPQEDDLSPTTHLELHARGGHVGFVGGSPRRPEFYLERRIPAWLAGER"
BASE COUNT          627 a         1291 c         1379 g          636 t
ORIGIN      
        1 gctgaggatt tccgccgtgg taccgccgcc ggcgccgctg ccgatgatgg cgacgtcggc
       61 ctccagcagc aggtcttttt ccaggcgtga gccgtcgtaa gtggtccagc cgcgggccag
      121 gccttcacgg aaactatcgg gtacaggcat gttcaggctc tcattcttgt aattgcgctc
      181 ggagtcgagc cgagcgagct ggaggcaggc taggcgcacg tgcgtggggt gcggagcagt
      241 gctggttcca tcgccctctg ggccgccctc cgggcgttcg gtggcacgtc accgtccgag
      301 cgcgcttgcg gcaacgcctg gccgacgcgc agccggctat caaggtcaaa actgcggcgg
      361 gccgggatag ccgcaatggg cccaggactg ggggcgggcg taccaggcca tctggatcag
      421 ctgcagcagc gaggcgtgcc ccatgcgcag caggtccagc gaactatgtt cccagcgcac
      481 caggaactgg cggatatcgt ccgcgctggc gttttcccag ctgccccaga tgccggtcag
      541 cgggccgcgg gtcacggcca tggccagcac gtcgagcagc tgctgggtca gcttgagcag
      601 ctccggcgag aggtggtgca ggttgcggtc gatgccctgc aacgtggcat ccaccgccgc
      661 ctgcagggcg tccggctgta ccgcgccctc cagcaccacc gggatgatcg cgcgcaggct
      721 cggcaggtcg ctggcgcgca gtacggcgta gtcggcggcc gggccgctgg cggagcaacc
      781 gctgaggctg gcggtgaccc cggcggtggc caggaacgcc ccgcccagca ggccgacctt
      841 gagcaggccg cggcgcgaca tcgacggcgc cgcgttggag atgtcggtca tggctggcct
      901 cagcggatga acagcttctg gatcagcttc tggatcgccg tgccgtacgg cgggtagatg
      961 aagcgcgctg cgttgaagcg ctgcttgatc agcacgccct tggccttgct gaaggtgagg
     1021 aagccctcgt ggccgtggta gtgacccata ccggacggac cgatgccgcc gaacggcatg
     1081 tcgtcctggg ccacgtgcag cagggtgtcg ttgaggcaca cgccgccgga gtgggtctcg
     1141 tgcagcacgc gctgctgctc acccttgtcg tagccgaagt agtatagggc cagcggccgt
     1201 gggcggtcgg aaatgtaggc gaaggcgtcg tccaggcgct gatagggcac gattggcagc
     1261 agcgggccga agatctcctc ctgcatcagc ttcatctcgt cactgacgtt gagcaccagg
     1321 ctgtgagcca ggcgacggcc ctggtcgccg gggaacagcg ggacgatctg cgcgcccttg
     1381 gcctcggcat cgctgatgta gcccttgagg cgaccgagct ggcgctcgtt gatgatggcg
     1441 gtgtagtccg ggttgttcgc cagcgtgggg tagaagcgct gcacgacctt gcggtaggcg
     1501 gcgacgaact cctcgacgcg ctcctgcggc accagcacgt agtccggcgc cacgcaggtc
     1561 tgcccggcgt tcatggtctt gccgaaggcg atgcgctcgg cggcgtcctc cagcggcacg
     1621 tcggcggaga cgatggccgg cgatttgccg cccagctcca gggtcaccgg caccaggttc
     1681 tcggcggcgg cgcgcatcac gtgcttgccg atactggtgg cgccggtgaa cagcaggtgg
     1741 tcgaacggca gcttggagaa ggccatgccg acctcggcct cgcccagcac cacggccacc
     1801 atgtcctcgg ggaagacttt ggccagcagc tccttgacca gctgcgaggt ggccggagtc
     1861 gattcgctca tcttgatcat cacccggttg ccggcggcca gggcgccgat cagcgggccg
     1921 aacgccaggt acagcgggta gttccacggc acgatcaccc cgaccacacc gagcggctgg
     1981 tacaccaccc gcgccgaggc cggctggaag gccacgccga catggcgacg cgagggcttc
     2041 atccatttgc ccaggcgctt gctggcgtag tcgatgccct gcaggctcgg catgatctcg
     2101 gccagcaggg tctcgctctc ggcgcggttg ctgaagtcgc gggagacggc gtcgagcagg
     2161 ttctgcttgt tctccaggat cgcctcgcgc agtgccttga gccaggcgcg gcgctggtcg
     2221 gccgagggca tcgggttggc gcggtaggcg gcgcgctggg cgcccagcaa cggctccagg
     2281 gcgtctatct gctgttggtt ttgttggaga taggcaacgt cggcgaccat ggtggcgtcc
     2341 tctcgggatg cggcaggatg ggaatggaat gacttttaga gtaaatgctc taaagtgtca
     2401 atcgagggcc gcgccggtcg tcagatcggg cgcttccctg tacttttgtc tcctttgccg
     2461 cgtgagccga accatggccc cgaagaacaa gacccgcgac cgcatcgtcg aagccagcct
     2521 ggagctgttc aacgcccagg gcgagcgcag cgtcaccacc aaccacatcg ccgcgcacct
     2581 gggcatctcg ccgggcaacc tgtactacca cttccgcaac aagcaggcga tcatcgccga
     2641 actgttcgcc cagtacgaag gccgcgtcga caccttcctg cgcccgccgt ccggccgcgc
     2701 cctgacggtg gccgacaaga ccttctacct ggaggcgctg ctggcggcca tgtggcacta
     2761 ccgcttcttg caccgcgacc tcgagcacct gctggaaacg gacgcggaac tggctgcgcg
     2821 ctaccgctcc ttcgccagtc gctgcatgca ggccgccggc gatatctacc ggggcttcgc
     2881 cgccgccgac atcctggcga tgaacgacca gcagatcgag gcgctggtac tcaacagctg
     2941 gatcatcctg acgtcctggg tgcgcttcct ctgcaccatc cgcagcaatc ccggcgacct
     3001 cagcgaggag ctgatgcgcc gcggcgtgta ccagatcctc gcgctggaga gcggctacgt
     3061 caccgaggcc gcacgcgagg ccgtgcaggc gctgttgcag cgcctgcacg tgccgatgga
     3121 tgcggtggtg ggttagcgct cgccggccag ccaggcggga atgcgccgct ccaggtagaa
     3181 ctccggccgc cgcggcgagc cgccgacgaa gccgacatgg ccgccgcggg cgtgcagctc
     3241 caggtgcgtg gtgggggaaa ggtcgtcctc ttgcggcacg ctgtgaggaa agacgaaggg
     3301 gtcgtcgctg gactggatga tcagcgtcgg cgtggcgatc cggccgaggt aatagtggct
     3361 ggaggcgcgc cggtagtagt cgtccgcatc ggcgtagccg tgcagcggcg cggtgaagcg
     3421 gccgtcgaaa tcccagaagg tgcgcatgcc gtccagcgag cccagctgct gcagtgccgc
     3481 gaggcgctcg tggtggccct cgtcggtgaa gcgctgctgc ttgtcgcgca cgtaggcgac
     3541 aagtgcgcgc atgaagtgcg cctggtagac cttggagaag ccgcggtcga tgcgctcggc
     3601 gcagtggtcc aggcgaaagg gcaccgacac cgcgaccgcc gcctgcaatc ccgagtcccg
     3661 tcccgattcg cccaggtact tgagcagcac gttgccgccc agcgaatagc cgaccgcgta
     3721 gagcggcgcc agcggccgct gggcctgcag gtggcgcacc acgctgacca cgtcctcgct
     3781 gaccccggag tgatagccac gcggcagcag gttgggctcg cccgagcagc cgcgccagtt
     3841 caacgccacg ctggcccagc cgcgcgccgc cagctgctgc tgcaggccga gcacatagtg
     3901 cgaactggaa gacccggtca gcccgtgcag cac
//
LOCUS       DATIHC010000267         2808 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35867, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000267 DATIHC010000000
VERSION     DATIHC010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2808
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35867"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..245
                     /locus_tag="VLF16_04280"
     CDS             <1..245
                     /locus_tag="VLF16_04280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003299564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSX70131.1"
                     /translation="HTLSAGQQRRVGLARLYLDAPPLWVLDEPFTALDKQGVAQLEAH
                     LARHCDGGGLVVLTTHHSLTEKPAGYRELDLGRRSA"
     gene            242..913
                     /gene="ccmB"
                     /locus_tag="VLF16_04285"
     CDS             242..913
                     /gene="ccmB"
                     /locus_tag="VLF16_04285"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015232 - heme transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HSX70132.1"
                     /translation="MNNVFLLLLSREARLLFRRPAELANPLVFFAIVIALFPLAVGPE
                     TNLLQTLSPGLIWVAALLAVLLSLDGLFRSDFEDGSLEQWVLSSHPLPLLVLAKVLAH
                     WLFSGLALVLLAPLLALMLGLPGRCLPVLLGSLLLGTPVLSLLGAVGAALTVGLKRGG
                     LLLALLILPLYIPVLILGTGAMQAALQGLPAAGHLLWLASLTALAVTLTPFAIGAGLR
                     ISVGE"
     gene            927..1685
                     /locus_tag="VLF16_04290"
     CDS             927..1685
                     /locus_tag="VLF16_04290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003296568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease"
                     /protein_id="HSX70133.1"
                     /translation="MMRWTWFHQWGSPKWFYERSGRWLPWLTAAAVVLLAVGIVWGLA
                     FAPPEKFQGNSYRIIYIHVPAAFLAQSCYLLMAVAGLVGLVWKMKLADVALQQAAPIG
                     AWLCFVALVTGAIWGKPTWGTYWIWDARLTSMLILLFLYFGVIALGNAISNRDSAAKA
                     CAVLALVGAVNIPIIQKSVEWWNTLHQPATFKVTGKASMNVEMWLPLLLCVLGFYCFL
                     GAVLLYRMRTEVLKREARSSWVKAEVGRLVEGRA"
     gene            1682..1858
                     /gene="ccmD"
                     /locus_tag="VLF16_04295"
     CDS             1682..1858
                     /gene="ccmD"
                     /locus_tag="VLF16_04295"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HSX70134.1"
                     /translation="MSFASFSEFLAMGHHGAYVWSAYGISLAVLALNVALPILARRRY
                     LQDEARRLRREKQQ"
     gene            1855..2310
                     /gene="ccmE"
                     /locus_tag="VLF16_04300"
     CDS             1855..2310
                     /gene="ccmE"
                     /locus_tag="VLF16_04300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009621129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017003 - protein-heme linkage [Evidence
                     IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HSX70135.1"
                     /translation="MNAVRKKRLYIVLAILVGVSAAVALALSALQENINLFYTPTQIA
                     NGEAPKDTRIRAGGMVAKGSVKRSADSLDVEFVVTDFAKNVTIRYRGILPDLFREEQG
                     IVALGKLNDQGVLVADEVLAKHDENYMPPEVTKALKESGKLPADGEAQQ"
     gene            2322..>2808
                     /gene="ccsA"
                     /locus_tag="VLF16_04305"
     CDS             2322..>2808
                     /gene="ccsA"
                     /locus_tag="VLF16_04305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HSX70136.1"
                     /translation="MIPELGHIALILALCLALVQATLPLIGAWLGDRQWMGLAQPAAW
                     GQFAMLAFAFACLTWAFMADDFSVAYVASNSNSALPWYYKFSAVWGAHEGSLLLWALI
                     LAGWTFAVAIFSRQLPDVMLARVLAVMGMISVGFLLFLIVTSNPFERLLVNTPMDGRD
                     LN"
BASE COUNT          391 a          950 c          934 g          533 t
ORIGIN      
        1 gtcacaccct gtctgccggc cagcaacgcc gtgtcggcct ggcccggctg tatctggacg
       61 cgccgccgtt gtgggttctc gacgagccct tcaccgccct ggacaagcag ggcgtggcac
      121 agctggaggc acatctggcg cgccactgcg atggcggtgg cctagtggtg ctcaccactc
      181 accacagcct gaccgagaag cccgccggct accgtgagct ggacctgggg cggcgcagcg
      241 catgaacaac gtcttcctcc tgctgctgtc acgcgaggcg cgcctgctgt tccgccgtcc
      301 ggccgagctg gccaacccgc tggtgttctt cgccatcgtc atcgcgctgt ttccgctggc
      361 cgtcggcccc gagaccaatc tgttacagac cttgtcgccg gggctgatct gggtcgcggc
      421 gctgctggcc gtgctgctct cgctggacgg gctgttccgc agcgatttcg aggacggctc
      481 gctggagcag tgggtccttt cgtcgcaccc gctgcccctt ctggtcctgg ccaaggtgct
      541 ggcacactgg ctgttctcgg ggctggcgct ggtgctgctg gcgccgctgc tggcgctgat
      601 gctcggtctg ccagggcgtt gcctgccggt gttgctcggc tcgctgctgc tcggcacccc
      661 ggtgctcagc ctgctcggcg cggtgggcgc ggcgctgacc gtcggcctca agcgcggcgg
      721 gctgctgctg gcgctgttga ttctgccgct gtacatcccg gtgctgatcc taggcaccgg
      781 ggcgatgcaa gcggccctgc aaggattgcc ggcggccggt catctgttgt ggctggcgag
      841 cctgaccgcc ctggcggtca ccctgacacc ctttgcaatt ggcgccggac tgcgaatcag
      901 cgtcggcgaa taactaaaga gtcaccgtga tgagatggac ctggtttcac cagtggggtt
      961 cgcccaagtg gttctatgag cgcagcggcc gctggctgcc ctggctgacc gcggctgccg
     1021 tcgtgctgct ggccgtgggc atcgtctggg gcctggcctt cgcgccgccc gagaagttcc
     1081 agggcaacag ctaccggatc atctacatcc acgtgccggc ggcgttcctc gcccagtcct
     1141 gctacctgct gatggcggtg gccgggctgg tcggcctggt gtggaagatg aagctggccg
     1201 atgtggcgct acagcaggcc gcgccgatcg gcgcctggct gtgcttcgtc gcgctggtca
     1261 ccggggctat ctggggcaag ccgacctggg gcacctactg gatctgggac gcgcgcctga
     1321 cctcgatgct gatcctgctg ttcctctact tcggcgtcat cgccctgggc aacgcgatca
     1381 gcaaccgcga cagcgcggcc aaggcctgcg ccgtgctggc gctggtcggt gcggtgaata
     1441 tcccgatcat tcagaagtcg gtggagtggt ggaacaccct gcaccagccg gccaccttca
     1501 aggtcaccgg caaggccagc atgaacgtcg agatgtggct gccgctgctg ctctgcgtgc
     1561 tcggcttcta ctgtttcctc ggcgccgtgc tgctctatcg catgcgcacc gaagtgctca
     1621 agcgcgaggc ccgcagcagc tgggtgaagg ccgaggtcgg tcgtctggtg gagggcaggg
     1681 catgagcttc gcctccttct ccgaattcct cgccatgggt caccatggcg cctacgtgtg
     1741 gtcggcctac ggcatcagcc tggcggtact ggccctcaac gtcgcgctgc cgatcctggc
     1801 gcgccggcgt tacctgcaag acgaggcgcg ccgtctgcgc cgggagaaac aacagtgaac
     1861 gcggtccgca agaaacgcct gtacatcgtc ctggccatcc tggtcggcgt ctccgccgcc
     1921 gtggccctgg ccctcagcgc gctgcaggag aacatcaacc tgttctacac cccgacccag
     1981 atcgccaatg gcgaggcgcc caaggacacc cgcatccgtg ccggtggcat ggtcgccaag
     2041 ggctcggtca agcgctccgc cgattcgctg gacgtcgagt tcgtggtcac cgacttcgcc
     2101 aagaacgtga ccatccgcta ccgcggcatc ctgccggacc tgttccgcga ggagcagggc
     2161 atcgtcgctc tcggtaagct gaatgaccaa ggcgtgctgg tcgccgacga ggtgctggcc
     2221 aagcacgacg agaactacat gccgccggaa gtcaccaagg cgctcaaaga gagcggaaaa
     2281 ctgccggccg atggcgaggc gcagcaatga ccgccgcgct gatgatcccc gaactgggcc
     2341 acatagccct gatcctcgcc ctgtgcctgg cgctggtaca ggcgacgctg ccgctgatcg
     2401 gtgcctggct cggcgatcgc cagtggatgg gcctggccca gccggcggcc tggggccagt
     2461 tcgccatgct cgccttcgcc ttcgcctgcc tgacctgggc gttcatggcc gacgacttct
     2521 ccgtggccta cgtggccagc aactccaaca gcgcgctgcc ctggtactac aagttcagcg
     2581 ccgtgtgggg cgcgcacgag ggctccttgc tgctgtgggc gctgattctc gccggctgga
     2641 ccttcgccgt ggcgatcttc tcgcgccagc tgccggacgt gatgctggcc agggtgctgg
     2701 ccgtgatggg catgatcagc gtcggcttcc tgctgttcct gatcgtcacc tccaacccgt
     2761 tcgagcggct gttggtcaac acgccgatgg acggccgcga cctcaatc
//
LOCUS       DATIHC010000268         1808 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_40472, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000268 DATIHC010000000
VERSION     DATIHC010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1808
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40472"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            55..987
                     /locus_tag="VLF16_04310"
     CDS             55..987
                     /locus_tag="VLF16_04310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007969052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSX70137.1"
                     /translation="MTAHLTTFSSHDETTRPAPVEELVPSRYALRLGDIDVLVISDGV
                     LPLPTETMSTNADPAARAAWFKDMHLGPDMFDWALNVLVVRSGEQIVLVDAGLGGQFP
                     GFPRAGQFPKRLEAAGIDLGEVTDVIITHMHMDHIGGLLVDAVKQRLRPDVRIHVTAT
                     EVAFWDTPDFAHTAMPAPVPDVLRATAQQFIAHYRGNLHIFDDEHEVAPGVVAKLTGG
                     HTPGHCIVHVNSGGERLTFAGDALFPVAFDHPDWHNGFEHDPEESVHVRVRLLREAAA
                     SGELFVATHLPFPSVGRVAVEGDAFRWIAAFWDY"
     gene            complement(1034..1339)
                     /locus_tag="VLF16_04315"
     CDS             complement(1034..1339)
                     /locus_tag="VLF16_04315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70138.1"
                     /translation="MFQKITRGLGDAVRSTEDCGQLIAARVDWHVVKKWDLMAEIRRR
                     DEFAAKDSRTGMLVGVYRHFGNHFKAGVGYNFSDFSDDLTDLSYRSQGWFFNAVGKY"
     gene            1487..>1808
                     /locus_tag="VLF16_04320"
     CDS             1487..>1808
                     /locus_tag="VLF16_04320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010656140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
                     /protein_id="HSX70139.1"
                     /translation="MSDLDKLLEALDDLAAKAEDAVLATVVKVQGSAYRRPGARMLIP
                     QFGGAVGTVSGGCLESDLAKKAWWLTEGGQPIVRTYSTGMADDEVGEEEELTFGLGCN
                     GTVHI"
BASE COUNT          283 a          655 c          595 g          275 t
ORIGIN      
        1 gctggccggg ggacgccatt gcctgtcgta acgacccgag aatggagaac gaccatgacc
       61 gctcacctca ccaccttcag ctcgcacgac gaaaccaccc gtcccgcccc cgtcgaggaa
      121 ctggtgccct cccgctatgc cctgcgcctg ggcgacatcg atgtgctggt catcagcgac
      181 ggcgtgctgc cgctgccgac cgagaccatg tccaccaacg ccgacccggc tgcgcgcgcc
      241 gcctggttca aggacatgca cctcggcccg gacatgttcg actgggccct caacgtgctg
      301 gtcgtccgca gcggcgagca gatcgtgctg gtcgacgccg ggctcggcgg ccagttcccc
      361 ggcttccccc gcgccggcca gtttcccaag cgcctggagg ccgcgggcat cgacctcggc
      421 gaggtcaccg acgtgatcat cacccacatg cacatggacc atatcggcgg cctgctcgtc
      481 gacgcggtga agcagcggct gcgcccggac gtgcgcatcc atgtcacggc caccgaagtg
      541 gcgttctggg acacccccga cttcgcccac accgccatgc cggcgccagt gcccgacgtg
      601 ctgcgcgcca ccgcccagca gttcatcgcg cattaccgcg gcaacctgca catcttcgac
      661 gacgagcatg aggtggcgcc cggcgtggtc gccaagctca ccggcgggca taccccgggg
      721 cactgcatcg tccacgtgaa ttcgggcggc gagcgcctga cgttcgccgg cgacgcgctg
      781 ttcccggtgg ccttcgacca cccggactgg cacaacggct tcgagcacga cccggaggaa
      841 tcggtgcacg tgcgcgtgcg cctgctgcgc gaggcggcgg ccagcggcga gctgttcgtc
      901 gccacccacc tgcccttccc atccgtgggc cgggtggcgg tcgaaggcga cgccttccgc
      961 tggatcgcgg cgttctggga ctactgatcg gtcgccgccc cgggccattg cactgtccgg
     1021 ggcggcgcgg ccgtcagtac ttgccgaccg cgttgaagaa ccagccctgg ctgcggtacg
     1081 acaggtcggt gaggtcgtcg ctgaagtcgc tgaagttgta gcccacgccc gccttgaagt
     1141 gattgccgaa gtggcggtag acgccgacca gcatgccggt gcggctgtcc ttggcggcga
     1201 actcgtcgcg gcggcggatc tcggccatca ggtcccactt cttcaccacg tgccagtcga
     1261 cgcgcgcggc gatcaattgg ccgcagtcct cggtgctccg caccgcgtca cccagaccac
     1321 gcgttatttt ctggaacatc tgcgcctgcg cctgtcgaac tcggagcaag acgacatgca
     1381 gccggccgga gcatccgccg ctcgcccgtg accccggaga cgacgcccgg cggcatggcc
     1441 gggccgcgct ggccggctgc cccgataccg ctacgggacc gcagccatga gcgacctcga
     1501 caaactgctc gaagccctgg atgacctggc cgcgaaggcc gaggacgcgg tgctcgccac
     1561 cgtggtgaag gtgcaaggct cggcctaccg gcggcccggc gcgcgcatgc tcattccgca
     1621 gttcggcggc gccgtcggca ccgtcagcgg cggctgtctg gagagcgatc tggcgaagaa
     1681 ggcctggtgg ctcaccgaag gcggccagcc gatcgtgcgc acctacagca ccggcatggc
     1741 cgatgacgaa gtcggcgagg aagaggaact gactttcggc ctgggttgca acggcaccgt
     1801 gcatatcc
//
LOCUS       DATIHC010000269         3002 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37787, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000269 DATIHC010000000
VERSION     DATIHC010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3002
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37787"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1267
                     /locus_tag="VLF16_04325"
     CDS             <1..1267
                     /locus_tag="VLF16_04325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019752377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HSX70140.1"
                     /translation="PQLQLDWNIFRQSWQIMRLGLGQRPAVSRSLIGSSWFWFLGAIY
                     LTQIPTFAKDLLNGDESVVTLILTVFSVGIALGSMLCERMSGHKVEIGLVPFGSFGLS
                     LFGILLWATSSSFPQAAATHDWLGLLGMGKAWWVLGSILGLGVFGGFYIVPLYALIQS
                     RTEEHERARVIAANNILNALFMVAAAVVSILFLSVAELSIPQLFLAVSLMNIAVNLYI
                     FKIVPEFTMRFLIWMLSHSMYRVRHQNLQVIPEGGAAVLVCNHVSFVDALLIGGAVRR
                     PVRFVMYYKIYNLPVLNFIFRTAGTVPIAGRNEDPEVFERAFARIAQYLAEGEVVCIF
                     PEGKLTTSGDIDEFKAGVERILAANPVPVIPLALQGLWGSFFSRAPHKGLFKRFWSRV
                     NIVAGTALPADTGRLALQEQVSLLRGDQR"
     gene            complement(1371..1685)
                     /gene="sugE"
                     /locus_tag="VLF16_04330"
     CDS             complement(1371..1685)
                     /gene="sugE"
                     /locus_tag="VLF16_04330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quaternary ammonium compound efflux SMR
                     transporter SugE"
                     /protein_id="HSX70141.1"
                     /translation="MSWIILLFAGLFEVCWAVGLKYTDGFTRPLPTLLTVGAMIVSIG
                     LLGLAMKELPLGTAYAIWTGVGAVGTVIAGICLFGESMALVRLLSVGLIVAGLIGLKL
                     SH"
     gene            complement(1840..2760)
                     /gene="rdgC"
                     /locus_tag="VLF16_04335"
     CDS             complement(1840..2760)
                     /gene="rdgC"
                     /locus_tag="VLF16_04335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HSX70142.1"
                     /translation="MWFRNLLVYRLTQDVPFDADALEAALAAKAARPCASQELTTYGF
                     MAPFGKGGDAPLVHVSGDFLLIAARKEERILPSSVVRDALKDKVDEIEAQQMRKVYKK
                     ERDQLKDEIVMSFLPRAFIRRSSTFAAIAPKLGLILIDSASAKKAEDLLSTLREAIGS
                     LPVRPLTVKMAPTATLTDWVKTQAAAQDFFILDECELRDTSEDGGVVRCKRQDLTSEE
                     IQLHLSSGKLVTQLSLAWQDKLSFVLDDKLTVKRLRFEDLLQDQAAQDGGDEALGQLD
                     ASFTLMMLTFTDFLPALFEAFGGEEIPEGI"
     gene            2921..2996
                     /locus_tag="VLF16_04340"
     tRNA            2921..2996
                     /locus_tag="VLF16_04340"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2954..2956,aa:Val,seq:tac)
BASE COUNT          507 a          930 c         1003 g          562 t
ORIGIN      
        1 gccgcagctg cagctggact ggaacatctt ccgccagtcc tggcagatca tgcgcctggg
       61 cctcggccag cgcccggcgg tgtcgcgttc gctgatcggc agctcgtggt tctggttcct
      121 cggtgcgatc tacctgacgc agatcccgac cttcgccaag gatctgctga acggcgacga
      181 gagcgtggtg acgctgatcc tcaccgtgtt ctcggtgggc atcgcgctgg gctcgatgct
      241 ctgcgagcgc atgagcggac acaaggtgga gatcggcctg gtgccgttcg gctccttcgg
      301 cctgtcgctg ttcggcatcc tgctatgggc cacgtccagc agcttcccgc aggcagccgc
      361 tacacatgac tggctgggcc tgctgggcat gggcaaggcg tggtgggtgc tcggctcgat
      421 cctcggcctg ggcgtgttcg gcggcttcta tatcgtgccg ctgtacgcgc tgatccagtc
      481 gcgtaccgag gagcacgagc gggcgcgggt gatcgccgcc aacaacatcc tcaacgcgct
      541 gttcatggtg gcggcggcgg tggtgtcgat cctcttcctc agcgtcgccg aactgagcat
      601 cccgcagctg ttcctggccg tctcgctgat gaacatcgcg gtgaatctgt acatcttcaa
      661 gatcgtcccc gagttcacca tgcgcttcct catctggatg ctcagccatt cgatgtaccg
      721 ggtgcgccac cagaatctgc aggtgatccc ggaggggggc gcggcggtgc tggtgtgcaa
      781 ccacgtgtcc ttcgtcgatg cgctgctgat cggcggtgcc gtgcgtcggc cggtgcgctt
      841 cgtcatgtac tacaagatct acaacctgcc ggtgctcaac ttcatcttcc gcaccgccgg
      901 caccgtgccg atcgccgggc gcaacgagga cccggaagtg ttcgaacggg cctttgcccg
      961 tattgcccag tacctggccg agggcgaggt ggtgtgcatc ttccccgagg gcaagctgac
     1021 caccagcggc gatatcgacg agttcaaggc gggggtcgag cgcatcctcg ccgccaaccc
     1081 ggtgccggtg attccgctgg cactgcaggg cctgtggggc agcttcttca gccgcgcgcc
     1141 gcacaagggc ctgttcaagc gcttctggtc gcgggtcaac atagtcgccg gcacggcgct
     1201 gccggcggac accggacgcc tggcgctgca ggagcaggta agcctgctgc gcggcgatca
     1261 gcgctaagcg cgatgcccac aagaaagccc gcccatcggc gggctttttt gtttgcagat
     1321 agggtgcgcc gtgcgcacca aggcaccgca ttgcgaaatc aatctggcgc tcagtggctg
     1381 agcttgaggc cgatcagccc tgcgacgatc agaccgacgc tgagcaggcg caccagggcc
     1441 atggattcgc cgaacaggca gatgccggcg atcaccgtgc cgacggcgcc gacgccggtc
     1501 cagatggcgt aggcggtgcc cagcggcaac tctttcatgg ccaggccgag caggccgatg
     1561 ctgacgatca tggcgccgac ggtgagcagg gtggggaggg ggcgggtgaa accgtcggtg
     1621 tacttgaggc cgacggccca gcagacctcg aacaggccgg cgaacaacag aatgatccag
     1681 gacatgggat ggctccttac tactgatgag cgggccgtcc cgggtgatca ctcggatgga
     1741 gcggcgaggt cgtcctcgcg ttgttcgcta ttttgcacag ggggttacac agggcaagtc
     1801 cgaaaggacg aacgggcccc gtgcgggcgt tgcggagggt cagatgcctt ccggtatctc
     1861 ttcgccgcca aaggcctcga acagtgccgg caggaagtcg gtgaaggtca gcatcatcag
     1921 ggtaaagctg gcgtccagct ggccgagggc ctcgtcgccg ccgtcctgag cggcctggtc
     1981 ctgcagcagg tcttcgaagc gcaggcgctt gacggtcagc ttgtcgtcca gcacgaagga
     2041 cagcttgtcc tgccaggcca gggatagctg ggtgaccagc ttgcccgagg ataggtgcag
     2101 ctggatctcc tcgctggtca ggtcctggcg tttgcaacgc accacgccgc cgtcctcgct
     2161 ggtgtcgcgc agctcgcatt cgtccagtat gaagaagtcc tgcgcggcag cctgagtctt
     2221 gacccagtcg gtgagggtgg cggtcggcgc catcttcacg gtcagcgggc gtaccggcag
     2281 cgagccaatg gcctcgcgca gggtggacag caggtcttcg gccttcttcg cgctggcgct
     2341 gtcgatcagg atcaggccga gcttgggcgc gatggcggcg aaggtgctgg agcggcggat
     2401 gaaggcgcgc ggcaggaagc tcatgacgat ctcgtccttg agctggtcgc gctccttctt
     2461 gtagaccttg cgcatctgct gcgcctcgat ctcgtcgacc ttgtccttca gcgcgtcacg
     2521 caccacgctg ctaggaagga tgcgttcctc cttgcgtgcg gcaatcagca ggaagtcgcc
     2581 actgacatgc accagcgggg catcgccgcc cttgccgaac ggcgccatga aaccgtaagt
     2641 ggtcagctcc tggctggcgc aggggcgcgc ggccttggcg gccagggccg cttccagggc
     2701 atcggcgtcg aacggcacgt cctgggtcag gcgataaacg agcaggttgc ggaaccacat
     2761 gggaatgaac actccttgaa cacgaagcgc gcattattct ccgccggggc cgattggcca
     2821 acccgcagct aagcctttgg aactgctcga aaattttttt caaaaaaggc ttgccaaggt
     2881 gaaagtgcat ccctagaatg cgccccactt cgagagtgaa gggtgattag ctcagccggg
     2941 agagcatctg ccttacaagc agagggtcgg cggttcgatc ccgtcatcac ccaccatctc
     3001 gc
//
LOCUS       DATIHC010000270         3861 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19383, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000270 DATIHC010000000
VERSION     DATIHC010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3861)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3861)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3861
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19383"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2422
                     /gene="uvrA"
                     /locus_tag="VLF16_04345"
     CDS             <1..2422
                     /gene="uvrA"
                     /locus_tag="VLF16_04345"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HSX70143.1"
                     /translation="VLALPEGRKLMLLAPVIRERKGEHLAVFDELRAQGFVRARVNGR
                     IYEMDELPKLDKQKKHSIDVVVDRFKVREDLQQRLAESFETAINLADGIALVAPMDDE
                     EGDEIIFSARFACPHCGHSISELEPKLFSFNNPAGACPTCDGLGVKQFFDGKRLVNGE
                     LTLAEGAIRGWDRRNVYYFQMLGSLSSHYGFSLDKPFDDLSAEHQKVILFGSGRDNVD
                     FRYLNDRGDIVKRSHPFEGIIPNLERRYRETESATVREELAKFLSTQPCPDCRGTRLR
                     REARHVWVGERTLPAVTGLPVGDACDYFGGMHLTGRRGEIAEKILKEIRERLQFLVNV
                     GLDYLTLDRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLGTL
                     THLRNLGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGRVVAEGTPDEVMNHPDSLTG
                     KYLSGREKIRYPATRTVRDKKKSLKLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKS
                     TLINNTLFPLAATALNGATTLEAAAHDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYT
                     GLFTPIRELFAGVPESRSRGYKPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPC
                     DVCKGKRYNRETLEVKYKGKSITEVLDMTIEEAREFFDAVPALARKLQTLVDVGLSYI
                     KLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLR
                     DHGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGMIIATGTPEDVAANKASHTGHFLK
                     PLLERDLA"
     gene            complement(2471..3861)
                     /locus_tag="VLF16_04350"
                     /pseudo
     CDS             complement(2471..3861)
                     /locus_tag="VLF16_04350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008018627.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="peroxidase family protein"
BASE COUNT          671 a         1356 c         1232 g          602 t
ORIGIN      
        1 ggtgctggcc ctgcccgagg gccgcaagct gatgctgctg gccccggtga tccgcgagcg
       61 caagggcgag cacctggcgg tgttcgacga gctgcgcgcc cagggcttcg tccgcgcgcg
      121 ggtcaacggc cgcatctacg agatggacga gctgcccaag ctggacaagc agaagaagca
      181 ctccatcgac gtggtggtcg accgcttcaa ggtgcgcgag gacctgcagc agcgcctggc
      241 cgagtccttc gagaccgcca tcaacctggc cgacggcatc gccctcgtag ccccgatgga
      301 cgatgaggaa ggcgacgaga tcatcttctc cgcgcgcttc gcctgcccgc actgcggcca
      361 ctcgatcagc gagctggaac ccaagctgtt ctccttcaac aaccccgccg gcgcctgccc
      421 gacctgcgac ggcctgggcg tgaagcagtt cttcgacgga aaacgcctgg tcaacggcga
      481 gctgaccctg gccgagggcg cgatccgcgg ctgggaccgg cgcaacgtct attacttcca
      541 gatgctcggc tcgctgtcct cgcactacgg cttcagcctg gacaagccat tcgacgacct
      601 gagcgccgag caccagaagg tgatcctgtt cggctcgggc agggacaacg tcgacttccg
      661 ttacctcaac gaccgtggcg acatcgtcaa gcgctcgcat cccttcgagg gcatcatccc
      721 caacctcgaa cggcgctacc gcgagaccga gtcggccacc gtgcgcgagg agctggccaa
      781 gttcctcagc acccagccct gcccggactg ccgcggcacg cgcctgcgcc gcgaggcgcg
      841 ccatgtgtgg gtgggcgagc gcaccctgcc ggctgtcacc ggcctgccgg tgggcgacgc
      901 ctgcgactac ttcggcggca tgcacctcac cggccgccgc ggcgagatcg ccgagaagat
      961 tctcaaggaa atccgcgagc gcctgcagtt cctggtcaac gtcggcctcg actacctgac
     1021 cctggaccgc agcgccgaca ccctctccgg tggcgaggcc cagcgcatcc gcctggccag
     1081 ccagatcggc gccggcctgg tgggcgtgat gtacatcctc gacgagccct ccatcggcct
     1141 gcaccagcgc gacaacgagc gcctgctcgg caccctcacc cacctgcgca acctgggcaa
     1201 cacggtgatc gtggtcgagc acgacgagga cgccatccgc ctggccgact acgtggtcga
     1261 tatcggtccc ggcgccggcg tgcacggcgg ccgcgtggtc gccgagggca ccccggacga
     1321 ggtgatgaac caccccgact cgctgaccgg caagtacctc tccggccgcg agaagatccg
     1381 ctacccggcc acccgcaccg tgcgcgacaa gaaaaagtcg ctgaagctca agggtgcgcg
     1441 cggcaacaac ctgcgcaacg tcgacctgga gatcccgatc ggtctgctca cctgcgtcac
     1501 cggtgtgtcc ggctcgggca agtcgacgct gatcaacaac actctgttcc cgctggccgc
     1561 caccgcgctg aacggtgcca ccaccctgga agccgccgcc cacgactcgt tcgacggcct
     1621 gcagcacttg gacaaggtgg tcgacatcga tcagagcccg atcggccgca caccgcgttc
     1681 gaacccggcc acctacaccg gcctgttcac cccgatccgc gagctgttcg ccggcgtgcc
     1741 ggagtcgcgc tcgcgcggct acaagcccgg caggttcagc ttcaacgtca agggcggccg
     1801 ctgcgaggcc tgccagggcg acggcgtgat caaggtggag atgcacttcc tgccggacat
     1861 ctacgtgccg tgcgacgtgt gcaagggcaa gcgctacaac cgcgaaaccc tggaagtgaa
     1921 gtacaagggc aagagcatca ccgaggtgct cgacatgacc atcgaggagg cccgcgagtt
     1981 cttcgatgcc gtgccggccc tggcgcgcaa gctgcagacc ctggtcgacg tcggcctgtc
     2041 gtacatcaag ctgggccaga gcgcgacgac cctgtccggc ggtgaggccc agcgggtcaa
     2101 gctgagccgc gagctgtcca agcgcgacac cggcaagacc ctgtacatcc tcgacgagcc
     2161 gaccaccggc ctgcacttcg ccgacatcca gcaactgctc gacgtgctgc accgcctgcg
     2221 cgaccacggc aacaccgtgg tggtgatcga gcacaacctg gacgtgatca agaccgccga
     2281 ctggctggtc gacctcggcc ccgagggcgg ctccaagggt ggcatgatca tcgccaccgg
     2341 caccccggaa gacgtcgccg cgaacaaggc ctcgcacacc gggcacttcc tcaaacccct
     2401 gctggaacgc gacctcgcct gaaacgaaaa agccccgcaa tcgcggggct ttttttcttg
     2461 tagcgaccga tcaggccaga tcgaagcgat ccaggttcat caccttggtc caggcagcga
     2521 cgaagtcctt gaggaacctc gcctcgccgg ccggaccggc gtagacctcg gcgagcgcac
     2581 gcagcacggc gttggagcca aacaccagat cgacacggga accggtccac ttaacctcgc
     2641 cggtctggcg gtcacggccc tcgaacaact gcccttccgc gaccggcttc cacaccgtcc
     2701 ccgtgtcgag caggttgctg aagaagtcgt tgttcagggt gcctggacgt gcagtgaaca
     2761 cgccggtctg ctcgccgccg acattgatgt tgatcgagcg caggccgccg agcagcaccg
     2821 tcagctcggg tgcggtcagg gtcagcagct gcgccttgtc gatcagcagc gcctcggccg
     2881 gcacacgata gcggcgcttc acgaagttgc ggaagccatc ggcgatgggc tcgagcacgg
     2941 ccatggattc gacgtcggtc tgctcctgag aggcatccat gcggcccggg gcgaagggca
     3001 cgctcagctc atggcccgcg ctcttcgccg cctgttcgat gcccaccgaa ccggcgagca
     3061 cgatcagatc ggccagctag actttcttgc cgccgttctg cgccgcattg aactcgccct
     3121 ggatcgcttc cagcgcctgc agcaccctag tcagttgctc cggctggttg gccagccaat
     3181 ccttctgcgg cgccagacga atacgagcgc cattggcacc gccgcgcttg tccgaaccgc
     3241 ggaaggtcga ggccgaggcc caggcggtac cgaccagctc ggataccgtc aggccggagg
     3301 acatgatgcg ggccttcagc gtcgcgacat cctgctcgtc gaccagcgca tggtcgaccg
     3361 ccgggatcgg gtcttgccag atcagctcct cggccggaac ttccgcgccc aggtagcgcg
     3421 aacgcggccc catgtcgcgg tgggtcagct tgaaccaggc gcgggcgaag gcgtcggcga
     3481 actggtcggg gttctccatg aagcggcggg agatcttctc gtaagccgga tcgaagcgca
     3541 gcgcgaggtc ggtggtcagc atggccgggg cgtgacgctt ggcgtcgtca tgggcatccg
     3601 gaaccgtgcc ctcgcccatg ccgtgcttgg gcttccactg gtgcgcgccg gccgggctcc
     3661 tggtcagctc ccattcgtag ccgaacaggt tccagaagaa gttgttgctc cacttggtcg
     3721 gcgtggtggt ccaggtcact tccaggccgc tggtgatggt gtcgccgccc ttgccgctgc
     3781 cgaaggtgtt cttccagccg aggccttgct gctcgagggg ggcagcctcg ggttccgggc
     3841 cgatgtactg cggatcgacc g
//
LOCUS       DATIHC010000271         2684 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5573, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000271 DATIHC010000000
VERSION     DATIHC010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2684
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5573"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..206)
                     /locus_tag="VLF16_04355"
     CDS             complement(<1..206)
                     /locus_tag="VLF16_04355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore-iron reductase FhuF"
                     /protein_id="HSX70144.1"
                     /translation="MIPAIAPLFQGPFAHYRDVLTLADDPRPALPGREFVSAARLEEQ
                     MLRFGPEHAEGDRRALMSLWSKYY"
     gene            complement(223..1515)
                     /locus_tag="VLF16_04360"
     CDS             complement(223..1515)
                     /locus_tag="VLF16_04360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015094173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine N(6)-hydroxylase/L-ornithine
                     N(5)-oxygenase family protein"
                     /protein_id="HSX70145.1"
                     /translation="MSIETLEYDVIGLGFGPANLAIAVALDEDRRVRENGLRYCFLEK
                     KPAFEWHGGMLLDDSRMQISFLKDLATLRNPSSRYTFVNYLHQKRRLEAFINISTFTP
                     SRLEYNDYLAWAAGHFTDRVHYGEEVIGVEPVLDGGDVTRVRVISRLADGRTRARITR
                     NLVVSIGGEPVIPEMFRPLRGDGRVIHSSSYLERIQSCAPRRVAVIGSGQSAAEIFSD
                     LCGRFPAAEVSMVMRSQALRPADDSPFVNEIFDPAYTDLVYGQAPEERHAFIQANAQT
                     NYSVVNLDLIESIYHRLYLQKVTGHAPHNLLPQRSIEAVQAGAEGVRLTLQGPEGREE
                     RLFDAVVLATGYRRDGYKRLLEGLQEHLGDGVERDYRLCCQPQMSAGIYLQGCCEASH
                     GLSDTLLSVLAIRSQEVVDALLDNSRHRQSTGVASACA"
     gene            complement(1667..2665)
                     /locus_tag="VLF16_04365"
     CDS             complement(1667..2665)
                     /locus_tag="VLF16_04365"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008030279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSX70146.1"
                     /translation="MTSNPLQQLPLPTGQRLVGRDDGASLALHLDERALLRARRQGEL
                     LIPLELAAEHQAEALWALAYWCFANNPELQALRLQLEQVDSALLASGLLVGEGGNLRI
                     ERSLFWQLPATFLRTAGSAGYPQQMVMHTTGRRHPRRAPKPSGEVYRRFDANLGAWIS
                     LRTLDIDADLARFNRWQNSARVAAFWQEEGDLAKHRQYLEELAADPRVLTLIGCFDDE
                     PFAYYEAYWAKEDRIAPFYEVGDYDRGIHMLVGEESHRGPHKVASWLSALTHYLFLDD
                     PRTQRVVAEPRADNARMIGHMQAQGYHKAKEFDFPHKRAALMVQSREVFFEHCRLA"
BASE COUNT          447 a          881 c          901 g          455 t
ORIGIN      
        1 aagtagtact tggaccacag cgacatcagc gcccgccgat ccccttcggc atgctcgggg
       61 ccgaagcgca gcatctgttc ctccagacgc gcggcgctga cgaactcacg cccgggcaat
      121 gccgggcgtg ggtcatccgc aagggtgagt acatcgcggt agtgggcgaa aggcccttgg
      181 aacagcgggg cgatggccgg gatcatcggc cccccgcctg ggtcaagcac atgcgctggc
      241 gactcctgtc gattggcggt gacggctgtt gtccagcaag gcgtcgacca cttcctgcga
      301 gcgaatggcc agcaccgaca gcagcgtatc gctcaggccg tggctggcct cgcagcaacc
      361 ctgcaggtag atgccggcgc tcatctgcgg ctggcagcac agacgataat cgcgttccac
      421 gccgtcgcca agatgctcct gcagcccttc gagcaggcgc ttgtagccgt cgcggcggta
      481 accggtggcc aagaccacgg catcgaacag gcgctcctcg cgcccttccg gcccctgcag
      541 cgtcagacgg actccttcgg cgccggcctg cacggcctcg atgctgcgct gcggcagcag
      601 gttgtgcggc gcgtggccgg tcactttttg cagatagagg cgatggtaga tgctctcgat
      661 caggtccaga ttgaccaccg agtagttggt ctgggcgttg gcctggatga aggcgtgacg
      721 ctcttccggg gcctggccat agaccaggtc ggtgtaggcc ggatcgaaga tctcgttgac
      781 gaaggggctg tcgtccgccg ggcgcagcgc ctggctgcgc atcaccatgc tcacctcggc
      841 ggcggggaaa cgcccgcaca ggtcactgaa gatttcggcc gcgctctgcc cggagccgat
      901 caccgccacg cgccggggcg cgcagctctg gatgcgctcc aggtagctgg aggaatggat
      961 cacccggccg tcgccgcgca gcgggcggaa catctccggg atcacgggct cgccgccgat
     1021 gctgaccacc agattgcggg taatgcgcgc acgggtgcgg ccatcggcca ggcgcgagat
     1081 caccctgacc cgggtcacgt cgccgccatc gagcaccggc tcgacgccga tgacttcctc
     1141 gccgtagtgc acgcggtcgg tgaagtggcc ggcggcccag gccaggtagt cgttgtactc
     1201 caggcgcgag ggcgtgaagg tgctgatgtt gatgaaggct tccagccgac gcttctgatg
     1261 caggtagttg acgaaggtgt agcggctgga cggattgcgc agcgtggcca gatccttgag
     1321 gaaggagatc tgcatgcggc tgtcatccag cagcatgccg ccgtgccact cgaaggccgg
     1381 cttcttctcc aggaagcagt agcgcagacc gttctcccgt acgcggcggt cctcgtccag
     1441 ggccaccgcg atggccaggt tggcgggccc gaagcccagc ccgatcacgt cgtattccag
     1501 tgtttctatg ctcatgtcag gccccgatcc tctgcggatg gttcgtgtga aggccaagtc
     1561 agcctctgga ggcgctcgcc tcgcccaacc tcatcagttc acggccacgc tcgggcgcgg
     1621 ctctgttgtt ctatgatctc gcggccgggg ccgcgagcct tactgctcat gccaagcggc
     1681 agtgctcgaa gaacacctcg cgggactgca ccatgagtgc cgcgcgcttg tgcggaaaat
     1741 cgaattcctt ggccttgtgg taaccctgcg cctgcatgtg cccgatcatc ctggcgttgt
     1801 cggcgcgagg ctcggcgacc acccgctggg tacgcgggtc gtcgaggaac aggtaatggg
     1861 tcagcgcgct cagccagctg gccaccttat gcgggccgcg atggctctcc tcgcccacca
     1921 gcatatggat gccgcggtcg tagtcgccca cctcgtagaa cggcgcgatg cggtcttcct
     1981 tggcccagta ggcctcgtag taggcgaacg gctcgtcgtc gaagcagccg atcagcgtca
     2041 gcacgcgcgg atcggcggcc agctcctcca gatactggcg gtgcttggcc aggtcgccct
     2101 cctcctgcca gaaagcggcc acacgggcac tgttctgcca acggttgaag cgcgcgaggt
     2161 ccgcgtcgat gtccagggtg cgcagggaga tccaggcgcc caggttggca tcgaaacgcc
     2221 gatagacctc gcccgaaggt ttgggcgcgc gacgcggatg gcgacggcct gtggtgtgca
     2281 tgaccatctg ctgcggatag ccggcgctgc cagcagtccg cagaaatgtg gccggcagct
     2341 gccagaacag tgaacgctcg atgcgcaggt tgccgccctc gcccaccaac aggccgctgg
     2401 ccagcagcgc cgagtcgacc tgctccagct gcaaacgcaa tgcctgcagc tcgggattgt
     2461 tggcgaagca ccagtaggcc agggcccaca gcgcctcggc ctgatgctcg gcggccagct
     2521 ccagcggtat cagcagctcg ccctgacgac gcgcgcgcaa cagcgcgcgc tcgtccaggt
     2581 gcagggccag gctggcgcca tcgtcgcggc cgaccaggcg ctgcccggtg ggcagcggca
     2641 gttgttgcag cggattagaa gtcataactc acactggcga tgac
//
LOCUS       DATIHC010000272         2301 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12355, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000272 DATIHC010000000
VERSION     DATIHC010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2301
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12355"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            44..1183
                     /locus_tag="VLF16_04370"
     CDS             44..1183
                     /locus_tag="VLF16_04370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017677505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homogentisate 1,2-dioxygenase"
                     /protein_id="HSX70147.1"
                     /translation="MSRKWISFPLREGEHSRQAHCDFPEGTYEREMGREGFFGPVTHL
                     HHKHPPTGWIDWEGPLRPHAFNYNRIASERDCPLEAPLCLHNADVKLRVWKTAETMRH
                     LVRNSDGDELLFVHDGAGHFYCDFGHLEYRDGDYLVIPRGTAWRIEPTEASHFLLIEN
                     TDGAYQLPDKGLLGPQAIFDPAVLDHPRIDDAFKAQQDEFTWQIRIKRRNQISTVTYP
                     FNPLDAVGWHGDNTVVRLNWRDIRPLMSHRYHLPPSAHTTFVANGFVVCTFTPRPVES
                     DPGALKVPFFHNNDDYDEVLFYHRGNFFSRDNIEAGMVTLHPCGFPHGPHPKALKKAQ
                     EDPATFAEEVAVMIDTRRALEVAEAAAAVDVPEYVNSWRAPGKQG"
     gene            1323..>2301
                     /locus_tag="VLF16_04375"
     CDS             1323..>2301
                     /locus_tag="VLF16_04375"
                     /EC_number="3.7.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HSX70148.1"
                     /translation="MKLASLNQGRDGELVVVSRDLSRAVKVPQIAATLQAALDDWATK
                     RPLLESVYQRLNDGLIDEAFVFDQADCHSPLPRAYHWADGSAYVNHVELVRKARGAEM
                     PESFWHDPLMYQGGADSFIAPHAPIQMADEAWGIDLEAEIAVITDDVPMGATAAQAAE
                     RIQLLMLVNDVSLRNLIPGELAKGFGFYQSKPSSSFSPVAVTPDELGETWKDGKVHRP
                     LVSHINGALFGQPNAGVDMTFNFPILVAHAAKTRPLGAGTIIGSGTVSNYDRSAGSSC
                     LAEKRMLEIVEQGEAKTPFLKFGDRVRIEMFDAAGQSIFGAIDQTVEKYE"
BASE COUNT          418 a          811 c          730 g          342 t
ORIGIN      
        1 tcgttatccg gtgcgcccgc gacaccctgc cgggagtcag ctcatgagcc gcaaatggat
       61 cagcttcccc ctgcgcgagg gcgagcactc gcgccaggcc cactgcgatt ttcccgaggg
      121 cacctacgag cgggagatgg gccgcgaggg cttcttcggc ccggtgaccc acctgcacca
      181 caagcatccg cccaccggct ggatcgactg ggaaggcccg ctgcgcccgc acgccttcaa
      241 ctacaacagg attgccagcg agcgcgactg cccactggag gcgccgctgt gcctgcacaa
      301 cgccgacgtg aagctgcgcg tgtggaagac cgccgaaacc atgcgccacc tggtgcgcaa
      361 cagcgacggt gacgagctgc tgttcgtcca tgacggggca gggcacttct actgcgactt
      421 cggccacctg gaataccgcg atggcgacta cctggtgatc ccgcgcggca ccgcctggcg
      481 tatcgaaccg acggaggcca gccacttcct gctgatcgaa aacaccgacg gcgcctacca
      541 gctgccggac aaggggctgc tcggcccgca ggcgatcttc gacccggcgg tgctcgacca
      601 cccgcgcatc gacgacgcct tcaaagccca gcaggacgag ttcacctggc agatccgcat
      661 caagcggcgc aaccagatca gcaccgtcac ctatccgttc aacccgctgg atgcggtcgg
      721 ctggcatggc gacaacacgg tggtgcgcct gaactggcgc gatatccgcc cgctgatgag
      781 ccatcgctac cacctgccgc cgtcggcgca caccaccttc gtcgccaatg gcttcgtggt
      841 ctgcaccttc accccgcgcc cggtcgagtc agatcccggc gcgctcaagg tgccgttctt
      901 ccacaacaac gacgactacg acgaggtgct gttctaccac cgcggcaact tcttcagccg
      961 cgacaacatc gaggccggga tggtgacttt gcacccctgc ggcttccccc atggcccgca
     1021 ccccaaggcg ctgaagaagg cccaggaaga cccggccacc ttcgccgagg aagtggccgt
     1081 gatgatcgac acccgccgcg cgctggaggt ggccgaggcc gccgccgcgg tggacgtgcc
     1141 cgaatacgtg aactcctggc gtgcgccggg gaaacaaggc taacgcagag cggccccctc
     1201 tcccattcat gggagagggt tggggagagg gcagtgccaa gctcaaccct ctcccccggc
     1261 ccctctccct cgagtgggag aggggagtaa cggggcgcgt gcaattgaat aggtaggaac
     1321 tcatgaaact cgcatcactc aaccagggcc gcgacggcga actggtcgtc gtctcccgcg
     1381 acctgtcccg cgccgtcaag gtgccgcaga tcgccgctac cctgcaggcc gcgctggacg
     1441 actgggcgac caagcgcccg ctgctggagt cggtctatca gcgcctcaac gacggcttga
     1501 tcgacgaggc cttcgtcttc gaccaggccg actgccacag cccgctgccg cgcgcctatc
     1561 actgggccga cggtagcgcc tacgtcaatc acgtggagct ggtgcgcaag gcccgtggcg
     1621 cggagatgcc ggaatccttc tggcacgacc cgctgatgta ccagggcggc gccgacagct
     1681 tcatcgcgcc gcatgcgccg atccagatgg ccgacgaggc ctggggcatc gacctggaag
     1741 cggagatcgc ggtgatcacc gacgacgtgc ccatgggcgc cacggcggcc caggcggccg
     1801 agcgcatcca gctgctgatg ctggtcaacg acgtgtcgct gcgcaacctg atccccggcg
     1861 agctggccaa gggcttcggg ttctaccaga gcaagccgtc gtcgagcttc tcgccggtgg
     1921 cggtgacgcc ggacgaactg ggcgagacct ggaaggacgg caaggtgcac aggccgctgg
     1981 tctcgcacat caacggcgcg ctgttcggcc agcccaacgc cggcgtggac atgaccttca
     2041 acttcccgat cctcgtggcc cacgcggcca agacccgccc cttgggcgcc ggcaccatca
     2101 tcggctcggg caccgtgtcc aactacgacc gcagcgccgg ttccagctgc ctggccgaga
     2161 agcgcatgct ggaaatcgtc gagcagggcg aggcgaagac gccgttcctc aagttcggcg
     2221 accgggtgcg catcgagatg ttcgacgccg ccggccagag catcttcggc gccatcgacc
     2281 agacggtgga gaagtatgag t
//
LOCUS       DATIHC010000273         1875 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19394, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000273 DATIHC010000000
VERSION     DATIHC010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1875)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1875)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1875
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19394"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1875
                     /locus_tag="VLF16_04380"
     CDS             <1..>1875
                     /locus_tag="VLF16_04380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSX70149.1"
                     /translation="MYFFGYTFNSVTLLALLLLIGVVVDDAIVVLENVERVMRTEKLS
                     PREAAIKAMDEVTGPIVAIVLVLCAVFIPVGFLGGLAGQMYKQFAITIAVSVVISGIV
                     ALTLSPALCALILKNEHKEPAAPFRWFNRGFERFTAGYTSGVRFFLKRSLIGLALFGG
                     MIAIMVVLFGRVPGSLVPDEDQGYVINAYFLPPAASLSRTDQVTSAVTEELMQHPAVE
                     DVVTFAGFDVLTFGTRSNAGVSFIPLKDWKERTTEELDARNLPQQFMGMGAKQKDALV
                     MTFNPPPISGMSTTGGFEAYIQDRSGGSIDELGAVVQKFVAAASKRPELAGVNSTFHA
                     DVPQYFIDLDRTKARALGVAINDVFTAMQATFGSYYVNDFNLYGRTWQVSLQSEANFR
                     RSPEDLDQVYVRSSGGDLIPLASLVRVERILGPDSYARFNVYPAAKLLGGPAPGYSSG
                     QALLAMQEVADEVLGEQYNLAWIGSAFQELATQGSGSTAFIFGLILVFLILAAQYERW
                     TLPVAVVTAVPFAVFGAILAIWLRDLANDVYFQVGLVTLIGLAAKNAILIIEFAVLCR
                     EEQKMGIFEAAMEAAKLRFRPIVMTSLAFILGCVPLAISSGAGSASRHSIGTGVIGGM
                     L"
BASE COUNT          285 a          629 c          622 g          339 t
ORIGIN      
        1 gatgtacttc ttcggctaca ccttcaattc ggtgacgctg ctcgcgctgc tgctgctcat
       61 cggcgtggtg gtggacgatg ccatcgtggt gctggagaac gtcgagcggg tgatgcgcac
      121 cgagaagctc agcccgcgcg aggcggcgat caaggccatg gacgaggtga ccgggcccat
      181 cgtcgccatc gttctggtgc tgtgcgccgt gttcatcccg gtgggtttcc tcggcggcct
      241 ggcggggcag atgtacaagc agttcgcgat caccatcgcg gtgtcggtgg tgatttccgg
      301 catcgtcgcg ctgaccctgt cgccggcgct ctgcgcgctc attctgaaga acgagcacaa
      361 ggagccggcg gcgccgttcc gctggttcaa ccgcggcttc gagcgcttca ccgccggcta
      421 caccagcggc gtgcgcttct tcctcaagcg ttcgctgatc ggcctggcgc tgttcggcgg
      481 catgatcgcc atcatggtcg tgctgttcgg ccgggtgccg ggctcgctgg tgccggacga
      541 ggatcagggc tacgtgatca acgcctactt cctgccgccg gcggcctcac tgagccgtac
      601 cgaccaggtg accagcgccg tcaccgaaga gctgatgcag catccggccg tagaagacgt
      661 ggtgaccttc gccggcttcg acgtgctgac cttcggcacc cgcagcaatg ccggggtgtc
      721 gttcatcccg ctgaaggact ggaaggagcg caccaccgag gagctggacg cgcgcaacct
      781 gccgcagcag ttcatgggca tgggcgccaa gcagaaggac gccctggtga tgaccttcaa
      841 cccgccgccg atcagcggta tgagcaccac cggcggcttc gaggcctaca tccaggatcg
      901 cagcggcggc tcgatcgacg aactcggcgc ggtggtgcag aagttcgtcg ccgcggcctc
      961 caagcggccc gagctggcgg gtgtcaacag caccttccac gccgacgtgc cgcagtactt
     1021 catcgacctg gaccgcacca aggcgcgggc cctgggcgtg gcgatcaacg acgtgttcac
     1081 cgccatgcag gcgaccttcg gcagctacta cgtcaacgac ttcaatctct acggccgcac
     1141 ctggcaagtc agcctgcagt cggaggccaa cttccgccgc agccccgaag atctcgacca
     1201 ggtctacgtg cgctccagcg gcggcgacct gatcccgctg gcatcgctgg tgcgggtcga
     1261 gcgcatcctc gggccggact cctacgcgcg cttcaacgtc tacccggcgg ccaagctgct
     1321 cggcgggccg gcgccgggct acagctccgg tcaggcgctg ctggccatgc aggaggtggc
     1381 cgacgaggtg ctcggcgagc agtacaacct ggcctggatc ggctcggcct tccaggaact
     1441 ggcgacccag gggtcgggca gcaccgcgtt catcttcggc ctaatcctgg tgttcctgat
     1501 cctcgccgcc cagtacgaac gctggaccct gcccgtggcc gtggtcaccg ccgtgccctt
     1561 cgccgtgttc ggcgcgatcc tggcgatctg gctgcgcgac ctggccaacg acgtctactt
     1621 ccaggtcggc ctggtgacgc tgatcggcct ggcggcgaag aacgccatcc tgatcatcga
     1681 gttcgccgtg ctgtgccgcg aggagcagaa gatgggcatc ttcgaggcgg cgatggaggc
     1741 cgccaagctg cgcttccgcc ccatcgtgat gacctcgctg gccttcatcc tcggctgcgt
     1801 gccgctggcg atcagcagcg gtgccggttc ggccagtcgt cattccatcg gtaccggggt
     1861 gattggcggt atgct
//
LOCUS       DATIHC010000274         2052 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_23749, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000274 DATIHC010000000
VERSION     DATIHC010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23749"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..326)
                     /locus_tag="VLF16_04385"
     CDS             complement(<1..326)
                     /locus_tag="VLF16_04385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017246351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HSX70150.1"
                     /translation="MGALENRIPPPLVATLIGILMGVSARYLPGFELTLGWRLAAGLP
                     VLLLGLGVCLAGVLSFHRARTTVNPLRPERASALVDGGIYQYTRNPMYLGFATVLVAW
                     SLALASP"
     gene            complement(331..1014)
                     /locus_tag="VLF16_04390"
     CDS             complement(331..1014)
                     /locus_tag="VLF16_04390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008569955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HSX70151.1"
                     /translation="MNRRPLVLIISVVILAVFAAAAYLYAPSKPTQTSQQSQATAPAQ
                     AATEATSDSSNLVRFHSPVFGPAKAPVTIVEFFDPSCEACRAFYPHVKKILAENPAEV
                     RLVLRYVLFHQASEEVARLLEASRKQNLYPQVLEAVLEAQPGWHDDPKAQEAWVVAER
                     VGLDVEKARADMNSPGVDAVLKQDMQDVKAVGVQGTPTFFVNGRPLDEFGLEPLRQLV
                     SSEVAKVRK"
     gene            complement(1015..1446)
                     /locus_tag="VLF16_04395"
     CDS             complement(1015..1446)
                     /locus_tag="VLF16_04395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003118384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="HSX70152.1"
                     /translation="MSLQPSSASWNLLLLAWLVALVSTLSALFIGEVMGQAPCVLCWF
                     QRAFMFPLAVILAIACYRSDFAIWRYALPLAAIGAALAFAHTLLYAGLIPQPIQPCTA
                     TGPSCSGAGMTIFGGVPLPVLALLAFTLITVLLIIIRRRTI"
     gene            complement(1457..1849)
                     /locus_tag="VLF16_04400"
     CDS             complement(1457..1849)
                     /locus_tag="VLF16_04400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003457621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016531 - copper chaperone activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HSX70153.1"
                     /translation="MAAAIPAQADVTVENAKLRLLPGNLPAAGYFDLRNNGDQPVVLT
                     GGSSDAFAEVMMHRSTLKDGVASMQHLSQVEVPAGSKLSFASGGYHLMLMQHQRTLAL
                     GDQVNVTLNFSDGRSVPIIFTAVAPTAP"
BASE COUNT          424 a          591 c          664 g          373 t
ORIGIN      
        1 ggtgaggcca gtgccaggga ccaagccaca agaacggtgg caaagccgag atacataggg
       61 ttgcgggtgt attggtagat gcctccatcg accaaagccg acgctcgttc agggcgtagc
      121 gggttgaccg tggtgcgagc gcggtggaat gacaaaacac cggcgaggca tacgccaagc
      181 ccgagcagca acactggcag accagcggcc agacgccagc caagcgtcag ctcgaagcca
      241 ggcaggtatc gagcgctcac ccccatcaat attccgatga gggtggcgac caggggcggc
      301 ggaattcggt tttccaacgc acccatagtg tcacttcctt accttggcaa cttcgctgct
      361 taccaactgg cgcagtggct ctaggccaaa ctcgtccagc ggtcggccat tgacgaagaa
      421 agtcggcgtg ccctgaacgc ccaccgcctt aacgtcttgc atatcctgct tcagtacggc
      481 gtcgacacca ggactgttca tgtccgcacg agccttctcc acatccagac cgactcgttc
      541 ggcgacgacc caggcctctt gggctttggg gtcgtcatgc cagcccggct gggcttctag
      601 cacggcctcc agcacctgcg gatacaggtt ctgtttacgc gaggcctcca gcaggcgtgc
      661 cacctcctcg gacgcttggt ggaacagcac atagcgcagc accaagcgta cttcggcggg
      721 gttctcggcg aggattttct tcacatgcgg gtagaaggcg cggcatgcct cacacgacgg
      781 gtcgaagaac tcgacgatgg tcaccggggc tttagctggg ccgaacaccg gcgagtggaa
      841 acggaccagg ttgctgctgt ctgaggtggc ttccgttgcc gcttgcgctg gcgcggttgc
      901 ttgggactgc tgcgaggtct gggtcggttt cgatggcgcg tacaggtatg cggcggcggc
      961 gaagacagcc aggatcacca cactgatgat caggaccagg gggcggcggt tcatttagat
     1021 ggttctccgg cggatgatga tgagtagaac ggtgatcaag gtgaatgcga gcagagccag
     1081 cactggcagc ggcacaccac cgaatatggt catcccggct cctgagcagg acgggccggt
     1141 agccgtgcaa ggctgaatcg gctgaggaat cagtccggcg tagagcagcg tatgggcaaa
     1201 ggccagcgcc gcgccgatag cggccagcgg cagggcataa cgccaaatgg cgaagtctga
     1261 gcggtagcag gcgatagcca gaattaccgc cagcgggaac atgaaggcac gctggaacca
     1321 gcacagtaca caaggggcct gccccatcac ctcgccgata aacagcgcgg agagggtcga
     1381 caccaaggcc actagccagg cgagcagtag caggttccag gaggcggagg aaggttgaag
     1441 gctcattgcg atgtccttat ggcgcagtgg gcgctacagc ggtgaagatg atcggcacgc
     1501 tgcgaccatc ggagaagttc agcgtcacgt tgacctgatc gcccaacgcc agcgtacgct
     1561 gatgttgcat cagcatcagg tggtagccac cggaagcgaa gctcagcttg ctgccggcag
     1621 gaacttccac ttgtgataga tgctgcatgc tagccacgcc atctttcaac gtactgcggt
     1681 gcatcatcac ctcagcgaac gcatcgctgc tgccccctgt gagcactacc ggctggtcgc
     1741 cattgttgcg gagatcgaag tagccggcgg cgggaagatt gccgggcagc agtcgcagct
     1801 tggcattctc cacggtgaca tcggcctgcg caggaatggc tgcggccaat agcagggctg
     1861 ctatccatcg tactcgaaac attatgatcc tccctggatg ccaggtatta gcaggtcttt
     1921 tctgggccgc agcagggctt ttctcgcccc ttctgttgcg gtgaatgagt gggttcggcg
     1981 atgaccagca acggacttgc cggctgtacg gtcggggcgg cgcagcagct gccttggtca
     2041 gcggtgctgg gt
//
LOCUS       DATIHC010000275         2530 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_14476, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000275 DATIHC010000000
VERSION     DATIHC010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2530
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14476"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            296..616
                     /locus_tag="VLF16_04405"
     CDS             296..616
                     /locus_tag="VLF16_04405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017362904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70154.1"
                     /translation="MPDLIRLPPQPDACELCARRLPLTRHHLIPKALHDKPYVQKRFA
                     KSERITATLWVCRACHNQIHKLFSEKELALTYNSREALLGEERLRTFVVWLASKPAGF
                     TPRS"
     gene            complement(620..955)
                     /locus_tag="VLF16_04410"
     CDS             complement(620..955)
                     /locus_tag="VLF16_04410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017244486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-helix bundle copper-binding protein"
                     /protein_id="HSX70155.1"
                     /translation="MVRERYASCIQACSACAIACETCAAACLKEPDVQHMATCISCDI
                     DCADLCRLAVRLMARDSPLADEICRLCALACQACAEACGEHQHDHCQQCAQACQRCVE
                     ECEAMAAGA"
     regulatory      1061..1274
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            1391..2002
                     /gene="cobO"
                     /locus_tag="VLF16_04415"
     CDS             1391..2002
                     /gene="cobO"
                     /locus_tag="VLF16_04415"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HSX70156.1"
                     /translation="MSESAERDARHLARMQRKKALVDEKIAQAQDEYGLLLVHAGNGK
                     GKSSSAFGMVARALGHCMRVGVVQFIKGAASTGEEAFFRRFPDEVQWFVMGEGFTWET
                     QDRQRDIVMAGEAWQVARRLLADDSIGLVVLDELNIALKHGYLPLDQVLADIEARPLL
                     QHVVVTGRGAQPEMIEAADTATEMTLVKHAFKAGVKAQKGVEF"
     gene            2115..>2530
                     /locus_tag="VLF16_04420"
     CDS             2115..>2530
                     /locus_tag="VLF16_04420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobyrinate a,c-diamide synthase"
                     /protein_id="HSX70157.1"
                     /translation="MNSRQCPAVLIAAPASGQGKTTVTAALARLHSRAGKRVRVFKCG
                     PDFLDPMILARASGAPVYQLDLWMVGEEECRRLLWQAAGEADLILIEGVMGLFDGAPS
                     AADLARRFGVPVLGVIDAGAMAQTFGALAHGLAHFQA"
BASE COUNT          378 a          860 c          886 g          406 t
ORIGIN      
        1 ccgcgacagc cgcgtcgatc tcagcctgtt gccgctgggc gatggtctgt cgatctgccg
       61 caagcgttga tccccccagg cggtgcacac agacgtaggg tgcgccgtgc gcaccgtgcg
      121 aggtccccgg atcgagtgtg ccgtcgtcgc ggcgtgttgc atgggtccac gccggtctgc
      181 catcacccct gctgtcatgg tgcgcacggc gcaccctacg gcaagcgccg tactcggctt
      241 tcgagtgcgg ttatgaggag ggtacgcggg acagcagcta tgggatgatg ccgacatgcc
      301 cgatctcatc cgcctgccgc cccagcccga cgcctgcgaa ctctgcgctc gtcggctgcc
      361 gctgacccgc caccacctga tccccaaggc gctgcacgac aagccctacg tgcagaagcg
      421 tttcgccaag agcgagcgca tcactgccac cctgtgggtg tgccgcgcct gccacaacca
      481 gatccacaag ctgttcagcg agaaggagct ggcgctgacc tacaacagcc gcgaggcgct
      541 gctgggcgag gagcgcctgc gcaccttcgt agtgtggctg gcgagcaagc cggccgggtt
      601 cacaccccgg tcctgagcct caggcgccgg ctgccatggc ctcgcattcc tccacacagc
      661 gctggcaggc ctgggcgcac tgctggcagt ggtcgtgctg gtgctcgccg caggcctcgg
      721 cgcaggcctg gcaggcgagg gcgcagagtc ggcagatctc atcggccagc gggctgtccc
      781 gggccatcag gcgtaccgcc aggcgacaca ggtcggcgca gtcgatgtcg caggaaatgc
      841 aggtcgccat gtgctgcaca tcgggttcct tgaggcaggc ggcggcgcag gtctcgcagg
      901 cgatggcgca ggcgctgcag gcctggatgc aggaggcgta gcgttcacga accatgggct
      961 tatcctcgtt gggggtgtcc tggttgtgag gccgcgacgc cgcgcgggtt cgacccttct
     1021 gcccggcggt gccgattgac cctggcggag tcgggctcta agctgcgcgc cagcctcagg
     1081 tgcccggcgc gcagcgttcg cgggtgaaac agggaagccg gtccattttc ggaagacgcc
     1141 ggcgctgccc ccgcaacggt aggtgagtca agggtcgctc gacgccactg tgctccagca
     1201 tgggaaggcg cgatccgcgg gttccacagc ccggctcacg agcccggaga ccggcctgtc
     1261 gcgatccacg gcagtgcggc gggctctgcg gttgcaggcc cctgtgcccg gccgccgcct
     1321 ttcttgctcc tgcccccaat caatggcgcg cccgcccaag cgggcgtgtg cggccttcca
     1381 ggagcccccc atgagcgaat ctgccgaacg cgatgcccgc cacttggcgc gcatgcagcg
     1441 caagaaggcg ctggtcgacg agaaaatcgc ccaggcccag gacgaatacg gcctgctgct
     1501 ggtacacgcc ggcaacggca agggcaagag cagctcggcc ttcggcatgg tcgcccgcgc
     1561 cctgggccac tgcatgaggg tgggcgtggt gcagttcatc aagggcgccg ccagcaccgg
     1621 cgaggaggcc ttcttccgcc gctttcccga cgaggtgcag tggttcgtga tgggcgaggg
     1681 cttcacctgg gagacccagg atcgccagcg cgatatcgtc atggccggcg aggcctggca
     1741 ggtggcgcgc cgcctgctgg ccgacgacag catcggcctg gtggtgctgg acgagttgaa
     1801 catcgccctc aagcacggct acctgcccct ggaccaggtg ctcgccgata tcgaggcgcg
     1861 cccgctgctg cagcacgtgg tggtgaccgg ccgcggtgcg cagcccgaaa tgatcgaggc
     1921 ggccgatacg gcgaccgaga tgaccctggt caagcacgcc tttaaggccg gcgtgaaggc
     1981 gcagaagggg gtcgagtttt gatgtcctcc cgcccccagc acgccatgcg ctgtgtcagc
     2041 ggcacttgcc gtacgggttt gtactgtctg cgtgccgctt ccttgcgcac gacgcactgg
     2101 atgacggaaa acacatgaat agtcgccaat gcccggccgt gctgatcgcc gctcccgcct
     2161 cggggcaggg caagaccacc gtcaccgccg ccctggcgcg tctgcacagt cgcgccggca
     2221 agcgcgtgcg ggtgttcaag tgcggtccgg acttcctcga cccgatgatc ctcgcccgcg
     2281 ccagcggcgc gccggtgtac cagctcgacc tgtggatggt cggtgaggaa gagtgtcggc
     2341 gcctgctgtg gcaggcggcg ggggaggccg acctgatcct gatcgagggc gtcatgggcc
     2401 tgttcgacgg cgcgccctcg gccgccgact tggcgcggcg tttcggcgtg ccggtgctgg
     2461 gcgtgatcga cgccggcgcc atggcccaga ccttcggcgc gctggcccac ggcctggcgc
     2521 acttccaggc
//
LOCUS       DATIHC010000276         7265 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28766, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000276 DATIHC010000000
VERSION     DATIHC010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 7265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7265
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28766"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..918
                     /locus_tag="VLF16_04425"
     CDS             <1..918
                     /locus_tag="VLF16_04425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010487653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSX70158.1"
                     /translation="KLTPGLRYDHYKQEPKATGDFDNNTNPTNNETLKSSKDHKLSGS
                     LLATWQVAEAALLYAQWAQGFKAPDATQLYMNYGSEGNYLRLGNAGLKPEESNGYEIG
                     AQLGNEKLGGSISLFDNHYKNFIDEDVALSSAQVAELGLDPSAYPFGVTRTENRAKVQ
                     IYGAEVAAHWEFVPHWKLWGSVAWANGEDRETNQRLSSVAPITSLLGLSYEHDQYGAD
                     LMLRAAARRDKVENEGDFEAPGYGVVDLTGWWQPAEFDGVKLQAGLFNAFDKKYWNAL
                     NVPTGTLVQPDDYYSEVGRNFRVSASWQY"
     gene            1001..1315
                     /locus_tag="VLF16_04430"
     CDS             1001..1315
                     /locus_tag="VLF16_04430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003151999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HSX70159.1"
                     /translation="MIHLCAPGELVEGQSRGFVVAGRKLLAVRRDGRAHVYLNSCPHR
                     GLTLEWRADDFLDASGSLIQCAHHGALFLIENGECVTGPCAGQSLQAIACHENAAGIW
                     IE"
     gene            complement(1353..2060)
                     /gene="sfsA"
                     /locus_tag="VLF16_04435"
     CDS             complement(1353..2060)
                     /gene="sfsA"
                     /locus_tag="VLF16_04435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000023 - maltose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA nuclease SfsA"
                     /protein_id="HSX70160.1"
                     /translation="MRFDPPLEEGRLLRRYKRFLADIETSSGEALTIHCPNTGSMLNC
                     LSEGARVWFSRSSDPKRKLPGTWELGETPHGRLACLNTGRANALVEEALRAGIITELA
                     GFTGFKREVAYGSEGSRADFRLDYLSGSLFLEVKSVTLGFADSTVAAFPDAVTERGAK
                     HLRELAALARQGGRAVLLYCVNLSGIEAVRAAEEIDPVYAAGLREARAAGVEVLAYGA
                     SVDPAEVRLLRRLEVLS"
     gene            complement(2050..3231)
                     /locus_tag="VLF16_04440"
     CDS             complement(2050..3231)
                     /locus_tag="VLF16_04440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017675308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HSX70161.1"
                     /translation="MAQSFSARSRAIEPFHVMALLARANELQAAGHDVIHLEIGEPDF
                     TTAAPIVRAGQAALAAGHTRYTAARGIPQLRQAIAGFYADRYGVDIDPERILITPGGS
                     GALLLASSLLVDPGRHWLLADPGYPCNRHFLRLVEGAAQLVPVGPESRYQLTPQLIER
                     HWDGDSVGALVASPANPTGTLLHKDELAALSTTLKRRGGHLVVDEIYHGLTYGCEAAS
                     VLEVDDEAFVLNSFSKYFGMTGWRLGWLVAPEAAVPELEKLAQNLYISAPSMAQHAAL
                     ACFEPESLAIFEERRHEFLRRRDYLLPALRELGFRIAVEPEGAFYLYADISAFGGDAF
                     AFCRHFIETEHVAFTPGLDFGRHLAGHHVRFAYTQSVERLEQAVERIARGLKSWSPDA
                     L"
     gene            3429..3872
                     /gene="dksA"
                     /locus_tag="VLF16_04445"
     CDS             3429..3872
                     /gene="dksA"
                     /locus_tag="VLF16_04445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019899 - enzyme binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HSX70162.1"
                     /translation="MPTKAKQNGNQLIRGFEPYKEKKGEEYMSDPMRAHFTSILNKWK
                     LELMQEVDRTVHHMQDEAANFPDPADRASQEEEFSLELRARDRERKLIKKIDETLQLI
                     EDNEYGWCDSCGVEIGIRRLEARPTATLCIDCKTLAEIKEKQLGS"
     gene            3966..4853
                     /gene="gluQRS"
                     /locus_tag="VLF16_04450"
     CDS             3966..4853
                     /gene="gluQRS"
                     /locus_tag="VLF16_04450"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004424341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA glutamyl-Q(34) synthetase GluQRS"
                     /protein_id="HSX70163.1"
                     /translation="MNDSPYVGRFAPTPSGYLHFGSLVACLASYLDARRAGGRWLLRM
                     EDLDPPREMTGAQDAILRSLETYGFEWDGELVRQSERHAEYAALIERLLNQGLAYACT
                     CSRKQLEGSGGIYPGNCRNAGHADIDAAIRLRVPALEYRFVDRVQGEFRQHLGHEVGD
                     FVIRRRDGLFAYQLAVVLDDAWQGVTDVVRGADLLDSTPRQLYLQELLGLPQPRYLHV
                     PLIIQPDGHKLGKSYRSPPLPADQAPPLLTRALRALGQQPPAELAETTARQVLDWGIA
                     HWDATRIPRSRTLAEAQLR"
     gene            5222..5398
                     /locus_tag="VLF16_04455"
     CDS             5222..5398
                     /locus_tag="VLF16_04455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008940627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70164.1"
                     /translation="MYIYRLVLILVVGIYLFSPAIMDWWIDPDGAWYRPYLLWLILIV
                     VTLILQSQRDADEL"
     gene            5382..>7265
                     /locus_tag="VLF16_04460"
     CDS             5382..>7265
                     /locus_tag="VLF16_04460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HSX70165.1"
                     /translation="MPTSFELSQLILISAAYLLLLFGVAWISEKGLIPRWLIRHPLVY
                     TLSLGVYASAWAFYGTVGLAYQYGFGFLASYLGVTGAFLLAPVLLYPILRITRTYQLS
                     SLADLFAFRFRSTWAGVLTTLFMLVGLLPLLALQIQAVADSIGILTREPLQDRFALGF
                     CALITLFTILFGARHIATREKHEGLVFAIAFESIVKLLALGGIGLYALYQVFGGPKEL
                     ELWLLQNQHALAALHTPLQEGPWRTLLLVFFASAIVMPHMYHMTFTENLNPRAIVTAS
                     WGLPLLLLLMSLSVPLILWASLKIGTTTNPEYFTLGLGLALGDRTLALLAYVGGLSAS
                     SGLIIVSTLALSGMALNHLVLPLYQPPAEGNIYRWLKWTRRGLILAIIAAAYGFYLLL
                     GAEQDLANLGIVAFVATLQFLPGALSVLYWPTANHRGFIAGLLAGILVWALSMLVPLV
                     TNLQGIYLPMLDILYVLDENSWHFAAVGSLAANVLVFTLVSLFTEASDEEKSAAEACT
                     VDNVRRPQRRELVAGSPQEFAAELAKPLGAVTAQKEVERALRDLHLPFDERRPYALRR
                     LRDRIEANLSGLMGPSVAQDMVETFLPYKSGSEAYVSEDIHFIESRLEDYQSRLTGLA
                     AELD"
BASE COUNT         1236 a         2593 c         2291 g         1145 t
ORIGIN      
        1 aagctgaccc ccgggctgcg ctacgaccat tacaagcagg agccgaaggc caccggcgac
       61 ttcgacaaca acaccaaccc gaccaacaac gaaaccctga agtcgagcaa ggaccacaag
      121 ctgtccggca gcctgctcgc cacctggcag gtggccgagg cagcgctgct ctatgcccag
      181 tgggcccaag gcttcaaggc accggacgcc acccagctgt acatgaacta cggttccgag
      241 ggcaactacc tgcgcctcgg caacgccggc ctcaaacccg aggaaagcaa cggctacgag
      301 atcggcgcgc agctcggcaa cgagaaactg ggcggctcga tcagcctgtt cgacaaccac
      361 tacaagaact tcatcgacga ggacgtggcg ctgtcgtccg cgcaggtcgc agaactcggc
      421 ctcgacccca gcgcctaccc gttcggcgtg acccgcaccg agaaccgcgc caaggtgcag
      481 atctacggcg ccgaagtggc cgcccactgg gagttcgtgc cgcactggaa gctgtggggc
      541 tcggtggcct gggccaacgg cgaggaccgc gaaaccaatc agcgcctgag ctccgtggcg
      601 ccgatcacca gcctgctcgg cctgagctac gagcacgacc aatacggcgc cgacctgatg
      661 ctgcgtgccg cagcacgccg cgacaaggtg gaaaacgagg gcgacttcga ggccccgggc
      721 tacggcgtgg tcgatctcac cggctggtgg caacccgccg agttcgacgg cgtgaagctg
      781 caggccggcc tgttcaacgc cttcgacaag aagtactgga atgcgctgaa cgtgcccacc
      841 ggcactctgg tgcagccgga tgactactac agcgaggtcg gccgcaactt ccgcgtctcc
      901 gcttcctggc aatactgagt tccacttcgc gcacgtaagc gcgccctacc ccatcaccac
      961 gcccgtgcgg gataatcccc gccccggcgt ggagatgctc atgattcatc tatgcgcccc
     1021 gggtgagctg gtcgaaggcc agagccgggg ctttgtcgtt gcggggcgga agttgctggc
     1081 ggtgcgccgc gacggccgcg cccatgtcta cctgaacagc tgtccgcatc gcgggctgac
     1141 gctggaatgg cgtgcggacg acttcctcga cgccagcggc agcctgatcc agtgcgccca
     1201 ccacggcgcg ttgttcctca tcgagaacgg cgaatgcgtg accggcccct gcgccgggca
     1261 gtcgctgcag gccatcgcct gccacgagaa cgccgcaggt atctggatcg aatagctgcg
     1321 cctgcacggc gagatgaaga tgcgcggcgc ccctacgaca gcacttcgag ccgccgcagc
     1381 agacgcacct cggccggatc gaccgaggcg ccgtaggcca gtacctcgac gcccgccgcc
     1441 cgcgcctcgc gcaggcccgc cgcgtagacc gggtcgatct cctcggcggc gcgcaccgcc
     1501 tcgatgccgg acagattcac gcagtacagc agcaccgcgc ggccgccctg ccgcgccaat
     1561 gcagccagct cgcgcagatg cttggcgccg cgctcggtca ccgcgtcggg gaaggcagcc
     1621 acggtggaat cggcgaagcc cagggtgacg ctcttcacct cgaggaacag cgagccgctc
     1681 agataatcca gacggaagtc cgcgcgactg ccctcgctgc cgtacgccac ctcgcgcttg
     1741 aagccggtaa aaccggccag ctcggtgatg atgccggcgc gcagcgcctc ctcgaccaac
     1801 gcgttggcgc gcccggtgtt gaggcaggcc agacggccgt gcggcgtctc gccgagctcc
     1861 caggtgcccg gcagcttgcg cttggggtcg ctggagcggc tgaaccagac ccgcgcgcct
     1921 tcgctcaggc agttgagcat cgagccggta ttgggacagt ggatggtcag cgcctcaccg
     1981 ctgctcgtct cgatatcggc gaggaagcgc ttgtagcggc gcagcaggcg cccctcctcc
     2041 agcggcgggt caaagcgcat cggggctcca gctcttcagg ccgcgggcga tgcgctcgac
     2101 tgcctgctcc aggcgctcga cgctctgcgt gtaggcgaag cgcacgtggt ggccggccag
     2161 gtggcgacca aagtccaggc ccggggtgaa ggccacgtgc tcggtctcga tgaagtgccg
     2221 gcagaaggcg aaggcatcgc caccgaaggc ggaaatatcc gcatataaat agaaggctcc
     2281 ctccggctcc acggcgatgc gaaagcccag ttcgcgcagg gccggcagca ggtagtcgcg
     2341 gcgacgcagg aactcgtgac gacgctcctc gaagatcgcc aggctctccg gctcgaagca
     2401 ggccagcgcg gcgtgctggg ccatgctcgg cgcgctgatg tagaggttct gcgccagctt
     2461 ttccagctcg ggcacggcgg cctcgggcgc caccagccag cccaggcgcc agccggtcat
     2521 gccgaagtac ttggagaagc tgttgagcac gaatgcctcg tcgtccacct ccagcacgct
     2581 ggccgcctcg cagccgtagg tcaggccgtg gtagatctcg tcgaccacca aatggccgcc
     2641 gcgccgtttc agcgtggtcg acagcgccgc cagttcatcc ttgtgcagca gggtgccggt
     2701 gggattggcc ggcgaggcga ccagggcgcc gacgctgtcg ccatcccagt gccgctcgat
     2761 cagctgcggc gtgagctggt agcggctctc cgggccgacc ggcaccagct gcgcggcacc
     2821 ttcgaccagg cgcaggaagt ggcggttgca ggggtagccg gggtcggcca gcagccagtg
     2881 cctgcccgga tcgaccagca gactggacgc caacagcagc gcccccgaac cgccgggagt
     2941 aatcaggatg cgttcggggt cgatatccac accatagcga tcggcataga acccggcgat
     3001 cgcctggcgc agctgcggaa tgccgcgcgc cgccgtgtag cgggtgtggc cggcagccag
     3061 cgcggcctgc cccgcacgca cgatgggcgc ggcggtggtg aagtccggct cgccgatttc
     3121 caggtggatc acatcatggc cggcggcctg caactcgttg gcccgggcca gcagggccat
     3181 gacgtgaaag ggttcgatgg cgcggctgcg cgcactgaag gactgggcca ttggccttcc
     3241 tttattgagg aaaaggggag attctaacca actgacctgt aaccccataa cacgtgagac
     3301 aaccgggagt agcatcgccg gaatcgatct ggtaagttcg ccggcttgca gccgcaggcc
     3361 ccggtgcact tgccggcaaa ggaacagatc ctgcgcaatg gatcagagag agtgagaggc
     3421 ggtcatccat gcccaccaaa gcaaaacaga acggcaacca gctgattcgt ggcttcgaac
     3481 cctataaaga gaagaagggc gaggagtaca tgagcgatcc gatgcgtgct cacttcacca
     3541 gcatcctcaa caagtggaag ctcgagctga tgcaggaagt ggatcgtacc gtgcaccaca
     3601 tgcaggacga agccgccaac ttccccgacc cggccgatcg cgccagccag gaagaagaat
     3661 tcagcctgga actgcgtgcc cgcgaccgcg agcgcaagct gatcaagaag atcgacgaga
     3721 ccctgcagct gatcgaggac aacgagtacg gctggtgcga ctcgtgcggc gtggaaatcg
     3781 gcatccgccg cctggaagcc cgccccaccg cgaccctgtg catcgactgc aagaccctcg
     3841 cggaaatcaa ggaaaagcag ctcggttcct gagttgcacg acggggcgcc aaggcgcccc
     3901 gtttcattta tggccgctga tcagcgggct ggcatccagt cgccccagtc gatagcctcg
     3961 ctgcaatgaa cgactccccc tacgtcgggc gcttcgcccc cacccccagt ggctatctgc
     4021 acttcggctc gctggtggcc tgcctcgcct cctacctcga cgcccgccgt gctggcggcc
     4081 gctggctgct gcgcatggaa gacctcgacc cgccccgcga gatgaccggc gcccaggacg
     4141 ccatcctgcg cagcctggag acctacggct tcgagtggga cggcgagctg gtgcgacaga
     4201 gcgagcggca tgcggaatac gcggcgctga tcgagcggct gctgaaccag ggcctggcct
     4261 atgcctgcac ctgctcgcgc aagcagctgg aaggcagcgg cggcatctac ccgggcaact
     4321 gccgcaacgc cggccacgcc gacatcgacg cggccatacg cctgcgcgtg ccggcgctgg
     4381 aataccgctt cgtcgaccgg gtgcagggcg aattccgtca gcacctgggc cacgaggtcg
     4441 gcgacttcgt cattcgccgc cgcgacgggc tgttcgccta ccaactggcc gtggtgctgg
     4501 acgacgcctg gcagggcgtg accgatgtgg tgcgtggcgc cgacctgctc gactccacgc
     4561 cgcgccagct ctatctgcag gaactgctcg gcctgccgca gccgcgctac ctgcacgtgc
     4621 cgctgatcat ccagccggac ggccacaagc tgggcaagag ctaccgctcg ccaccgctgc
     4681 cggccgatca ggcaccgccc ctgttgaccc gcgccctgcg cgccctcggc cagcagccgc
     4741 ccgccgaact ggccgagacc acggcgcgcc aggtgctcga ctggggcatc gcccactggg
     4801 acgccacgcg catcccgcgc agccgcacgc tggccgaagc ccagctgcgc taacgccacc
     4861 gcgccagtcg cgccctacgc ggcctccgtc gggtggactc aggagcgcag cgaacagtcc
     4921 atcattcgcc cgcagccgaa accccgctat cccggtggtg tgctgttgtg cgagtgcgcc
     4981 cctgcgcgcc gccccttatt cgcgatcaac atggagcttg gtcgtcgcga ctttccgtag
     5041 tcggactcgg caacacagcg aacagtccgc cgtcccgccc gcacagccac cgcatctctg
     5101 ccccccaccg tggcccaccg ccgcgcgatt acgcccttac ctatcgggcc agcggcgcat
     5161 cgctgtggcc ggagcctggc ggcttccttt accatcgccg cattcctcga cgagaaaccc
     5221 catgtacatc taccgactgg tactgatcct ggtggtgggc atctacctgt tctcccccgc
     5281 catcatggac tggtggatcg accccgacgg cgcctggtac aggccctacc tgctgtggct
     5341 gatcctcatc gtcgtcaccc tgatcctgca gagccagcgc gatgccgacg agctttgaac
     5401 tcagccagct gatcctgatc agcgcggcct atctgctgtt gctgttcggc gtcgcctgga
     5461 tcagcgaaaa gggcctgatc ccgcgctggc tgatacgcca cccgctggtc tacaccctgt
     5521 cgctcggcgt atacgccagc gcctgggcct tctacggcac ggtcggcctg gcctaccagt
     5581 acggcttcgg cttcctcgcc agctacctgg gtgtgaccgg cgccttcctg ctggcgccgg
     5641 tgctgctcta tccgatcctg cgcatcaccc gcacctacca gctgtcgtct ctggccgacc
     5701 tgttcgcctt ccgcttccgc agcacctggg ccggcgtgct cacgacgctg ttcatgctgg
     5761 tcggcctgct gccgctgctg gccctgcaga tccaggcggt ggcggattcc atcggcatcc
     5821 tcacccgcga gccgctgcag gaccgcttcg ccttgggctt ctgcgcgctg atcaccctgt
     5881 tcaccatcct cttcggcgcg cgccacatcg ccacccgcga gaagcacgag ggcctggtgt
     5941 tcgccatcgc cttcgagtcg atcgtcaagc tgctggccct cggcggcatc ggcctgtacg
     6001 cgctgtacca ggtgttcggc ggccccaagg agctggagct gtggctgctg cagaaccagc
     6061 acgcgctggc cgcgctgcac accccgctgc aggaaggccc gtggcgcacc ctgctgctgg
     6121 tgttcttcgc ctcggccatc gtcatgccgc acatgtacca catgaccttc accgagaacc
     6181 tcaacccgcg cgccatcgtc accgccagct ggggcctgcc gctgctcctg ctgctgatga
     6241 gcctgtcggt gccgctgatc ctctgggcca gtctgaagat cggcaccacc accaatccgg
     6301 aatacttcac cctgggcctc ggcctggccc tgggtgatcg cacgctggcg ctgctcgcct
     6361 atgtcggcgg cctgtccgcc tccagcggac tgatcatcgt cagcacgctg gcgctgtcgg
     6421 gcatggcgct gaaccacctg gtgctgccgc tctaccagcc gccagctgaa ggcaacatct
     6481 accgctggct gaaatggacc cgccgcggcc tgatcctggc catcatcgcc gccgcctacg
     6541 gcttctatct gctgctcggc gccgagcagg acctggccaa cctcggcatc gtcgcgttcg
     6601 tcgccaccct gcagttcctg cccggcgcgc tctcggtgct gtactggccc acggccaacc
     6661 atcgcggatt catcgccggc ctgctcgccg gcatcctggt ctgggcgctg agtatgctgg
     6721 tgccgctggt gaccaacctg cagggcatct acctgccgat gctggacatc ctctacgtgc
     6781 tggacgagaa cagctggcac ttcgccgcgg tcggctcgct ggccgccaac gtgctggtgt
     6841 tcaccctggt ttcgctgttc accgaggcca gcgacgagga aaagagcgcc gccgaggcct
     6901 gcaccgtgga caacgtgcgc cgcccgcagc gccgcgagct ggtcgccggc tcgccgcagg
     6961 aattcgccgc cgagctggcc aagccgctcg gcgccgtcac cgcgcagaag gaagtggagc
     7021 gcgccctgcg cgacctgcac ctgcccttcg acgaacgccg gccttatgcc ctgcgccgcc
     7081 tgcgcgaccg tatcgaggcc aacctgtccg gcctcatggg ccccagcgtg gcccaggaca
     7141 tggtggagac cttcctgccc tacaagtccg gcagcgaggc ctatgtcagc gaagacatcc
     7201 acttcatcga gagccgcctg gaggactacc agtcgcgcct caccggcctg gccgccgagc
     7261 tggac
//
LOCUS       DATIHC010000277         1771 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19397, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000277 DATIHC010000000
VERSION     DATIHC010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1771
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19397"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..293)
                     /locus_tag="VLF16_04465"
     CDS             complement(<1..293)
                     /locus_tag="VLF16_04465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003253243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSX70166.1"
                     /translation="MSAYDVVVIGGGPGGYNAAIRAGQLGLKVACVEGRETLGGTCLN
                     VGCMPSKALLHASEIYDAAAGKEFANLGIEVKPVLNLAQMMKQKEESVTALTKG"
     gene            complement(313..1515)
                     /locus_tag="VLF16_04470"
     CDS             complement(313..1515)
                     /locus_tag="VLF16_04470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003246310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSX70167.1"
                     /translation="MPKPSRTLLLMLMTLTALGEISTQLLIPALGELEQGFAAAQGSS
                     LAALSTFVAAFGLGQLGVGPLSDRLGRRPVLIAGLLGYLLATGWMLLAGDLSEFIAAR
                     ALQGLAACSALVLARAVVRDVWQAQAGPALALTVIGMLTSIALAPMLGGLLTAYWGWQ
                     APVLAAMAVGGVALLAVLFFYKESNPHLDPQAGRLMRLAGDYRDLLRGRSVRTFALTL
                     AFTYGAMFCVIAGSSTVYIKLLGLTAAEYGVTFGAIVSGLIAGALFTQRKIMQLGPQR
                     IVAIGVALVAAGAALTLLVHGLFGLSVLGLSLPQVLVTVGGGMVLPASVAGAVIPNAH
                     RAGLAAGFMGFAQMAGATLAGVLLALLQDGTSWPMVLLHGSFATAAFMAFHLLSRAPG
                     VVPVPASR"
BASE COUNT          385 a          605 c          539 g          242 t
ORIGIN      
        1 cccttggtta gcgcggtaac gctttcctcc ttctgcttca tcatctgggc cagattgagc
       61 acgggcttga cctcgatgcc gaggttggcg aactccttgc cggccgccgc atcgtaaatc
      121 tccgaagcat gcagcaatgc cttggatggc atgcagccga cattcaggca ggtgccgccg
      181 agcgtctcac gcccctccac gcaagccacc ttgagcccca gctgcccggc gcgaatggcg
      241 gcgttgtagc cgccgggacc accgccgatc accactacat catatgcact catgaagcac
      301 tccctcttcg agtcagcgac tggccggcac aggcactacg cccggcgcgc ggctcagcag
      361 gtggaaggcc atgaaggccg ccgtggcgaa agaaccatga agaagaacca taggccacga
      421 cgtgccgtcc tgcagcagag cgagcaggac accggccaaa gtggcgccgg ccatctgcgc
      481 gaagcccatg aagcccgccg ccagcccggc gcgatgagcg ttgggaatca ccgctccggc
      541 caccgatgcc ggcagcacca tgccgccgcc cacggtaacc agcacctgcg gtagcgaaag
      601 acccagtacg gagagaccga agaggccatg gaccaacagt gtcaacgccg cgccggccgc
      661 caccagggcg acgccgatgg cgacgatgcg ctgggggccg agctgcatga tctttctctg
      721 ggtaaacaac gcgccggcga tcaggccgga gacgatagcg ccgaaggtta cgccgtactc
      781 cgcggcggtc aggcccagca gctttatata gacggtggac gacccggcga tcacacagaa
      841 catcgcaccg taggtgaagg ccagggtaag cgcgaaggta cgcaccgagc gtccgcgcag
      901 caggtcccgg taatcgccgg cgagcctcat caggcgccca gcctgcgggt ccaggtgcgg
      961 gttgctctcc ttatagaaga agagcaccgc caacaacgcc accccgccca cggccatggc
     1021 ggccagcacc ggcgcctgcc atccccagta tgcagtcagc agaccgccga gcatcggggc
     1081 cagagcgatg gaggtcagca tgccgatcac tgtcagcgcc agggccgggc cggcctgggc
     1141 ctgccacaca tcacgaacca ccgcacgcgc cagaactagc gccgagcacg ctgccaatcc
     1201 ctgtagtgcc cgggccgcga tgaattcgga aagatcgcca gccagcagca tccagccggt
     1261 tgccagcaga tagccgagca ggccggcgat cagaaccggg cgacgaccga ggcggtccga
     1321 cagcggcccc acccccagtt gccccagacc gaaggctgca acgaatgtcg acagcgcggc
     1381 caagctcgag ccctgcgcgg ccgcaaagcc ctgctccagc tcgccgagcg cgggaatcag
     1441 caattgagtg gagatttccc ccagcgcggt cagcgtcatg agcatcagca gcagtgttct
     1501 ggacggtttc ggcatgaccg gtctccgggt gcgaggccac ttcgaagcga tgcgaccatt
     1561 tatattttga ccataatatg aaatattgga tgatgtccat aatcaaaaga cgagaggagc
     1621 acgccccatg caagcaccca cccgcgaaca aacgcttcaa cactggcagg aagccgagcg
     1681 cgccgcccgt gccagactcg gcgaacccgg cacgctgtcg ctgaaacagg tcagcgagct
     1741 gagcgcacag gaattcttcg accgtatcgg c
//
LOCUS       DATIHC010000278         2294 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_490, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000278 DATIHC010000000
VERSION     DATIHC010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2294
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..796
                     /locus_tag="VLF16_04475"
     CDS             <1..796
                     /locus_tag="VLF16_04475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017674933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HSX70168.1"
                     /translation="GGNEGVGRVEQLGDGVSNVKVGQTVLLPVGCGTWVTHLHAPAAK
                     LIPLPDADPQQLAMMTINPPTASLLLSQFVDLQPGDWVIQNAANSGVGGYLIQLAKLR
                     GFKTINVVRREAAVEGVKAEGGDVVLVDGPDLHKRVREATGGAKLMLGIDAVGGKATD
                     HVAACLSEGGTLVNYGLMSGEPCQVSASSFVFRDVTLRGFWLAKWFQKATPAEQMKVF
                     GELTQLIAGGKLKARIAATYPVARIKDAIAAAASGERDGKILIVAE"
     gene            complement(1086..>2294)
                     /locus_tag="VLF16_04480"
     CDS             complement(1086..>2294)
                     /locus_tag="VLF16_04480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003303968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSX70169.1"
                     /translation="QTGTGKTAAFLLPLLNRLLGDANAKQRTDVRSLILLPTRELAQQ
                     ILKEVERFSQFTFLKSTLVTGGEDFKEQAALLRRQPDLLIATPGRLMEHLNAGSLKLN
                     GVEVLVLDEADRMLDMGFAEDIERITAECANRQQTLLFSATGGGKVLREMIAKVLREP
                     VHLKLNSVDQLSETTVQQIITADDPGHKERLVHWLLSNETYRKAIVFTNTRAQADRLY
                     GHMVAADYKVFVLHGEKDQKDRKLAIDRLKQGGTKVLVATDVAARGLDIEGLDLVINF
                     DMPRSGDEYVHRIGRTGRAGEAGLAVSLICHNDWNLMSSIERYLKQRFERRVIKELKG
                     SYQGPKNVKASGKAVGVKKKKTDKKDGAKKPAAKAAPKRRPNAPKAAPSGLVSQDGLA
                     PLKRKKPAAE"
BASE COUNT          337 a          782 c          777 g          398 t
ORIGIN      
        1 cggcggcaac gagggtgtcg gccgcgtcga gcaactgggc gacggcgtga gcaacgtcaa
       61 ggtcggccag accgtgctgc tgccggtagg ctgcggtacc tgggtgaccc acctgcacgc
      121 ccccgccgcc aagctgatcc cgctgccgga cgccgatccg cagcaactgg cgatgatgac
      181 catcaacccg ccgaccgcgt ccctgctgct cagccagttc gtcgacctgc agccgggcga
      241 ctgggtcatc cagaacgccg ccaactccgg cgtcggcggc tacctgatcc agctggccaa
      301 gctgcgcggc ttcaagacca tcaacgtggt gcgccgcgag gcggcagtgg aaggcgtgaa
      361 ggccgagggc ggcgacgtgg tgctggtgga cggcccggac ctgcacaagc gcgtgcgcga
      421 ggccaccggc ggcgccaagc tgatgctcgg catcgacgcg gtgggcggca aggccaccga
      481 ccacgtggcg gcctgcctga gcgagggcgg caccctggtg aactacggcc tgatgagcgg
      541 cgagccgtgc caggtgtcgg cctcctcctt cgtcttccgt gacgtcaccc tgcgcggctt
      601 ctggctggcc aagtggttcc agaaggccac cccggccgag cagatgaagg tcttcggcga
      661 gctgacccag ctgatcgccg gcggcaagct caaggcacgc atcgccgcca cctaccccgt
      721 cgcccggatc aaggacgcca tcgccgcggc cgccagcggc gagcgcgacg gcaagatcct
      781 gatcgtcgcc gagtaacggc gcccgtgccg atcggtgtca ggtgcactcc cttcggcgag
      841 tgcccctgac gacggccaac gtagggtgcg ccgtgcgcac cacctcggat caccccggct
      901 caaccgcagg gccttggtgc gcatggcgca ccctacgtaa agcgagccgt tcgggccctt
      961 cgatgagcct gcctgcaacg gcttccatgt cgggtgcgcc ttacgcacca cccagggtca
     1021 tctaaagcgc catgggcaca tcgtgcaccc acgcacaaaa aaggggccct cgggcctctt
     1081 tcgttttact ccgccgccgg cttcttgcgc ttcagcgggg ccaggccgtc ctggctgacc
     1141 agccccgagg gcgcggcctt tggcgcgttc gggcggcgtt tgggcgcggc cttggcggcc
     1201 ggcttcttgg cgccgtcctt cttgtcggtc tttttcttct tcacacccac ggccttgccg
     1261 gacgccttga cgttcttcgg cccctggtag ctgcccttga gttccttgat cacccggcgc
     1321 tcgaagcgct gcttgagata gcgctcgatg ctcgacatca ggttccagtc gttgtggcag
     1381 atcagcgaca ccgccaggcc tgcctcgccg gcacgaccgg tgcggccgat gcggtgcacg
     1441 tactcgtcgc cggagcgcgg catgtcgaag ttgatcacca ggtccaggcc ctcgatgtcc
     1501 aggccgcggg ccgccacgtc ggtggccacc agcaccttgg tgccgccctg cttgagacgg
     1561 tcgatggcca gcttgcggtc cttctggtcc ttctcgccgt gcagcacgaa gaccttgtag
     1621 tcggccgcca ccatgtggcc atagaggcgg tcggcctggg cccgggtgtt ggtgaagacg
     1681 atggccttgc ggtaggtctc gttgctcagc agccagtgca ccaggcgctc tttgtggccc
     1741 ggatcgtcgg cggtgatgat ctgctgaacg gtggtctcgc tgagctggtc gacgctgttg
     1801 agcttgaggt gcaccggctc gcgcagcacc ttggcgatca tctcgcgcag caccttgccg
     1861 ccgccggtgg cggagaacag cagggtctgc tggcggttgg cgcattcggc ggtgatgcgc
     1921 tcgatgtcct cggcgaagcc catgtcgagc atgcggtcgg cctcgtccag caccagcacc
     1981 tcgacgccat tgagcttcag gctaccggca ttgaggtgct ccatcaggcg gcccggcgtg
     2041 gcaatcagca ggtcgggctg gcgacgcagc agcgcggcct gctccttgaa gtcctcacca
     2101 ccggtgacca gcgtcgactt gaggaaggtg aactgggaga agcgctccac ttccttgagg
     2161 atctgctggg ccagctcgcg ggtcggcagc aggatcagcg agcgcacgtc ggtgcgctgc
     2221 ttggcattgg cgtcgccgag cagccggttg agcagcggca gcaggaaggc ggcggtcttg
     2281 cccgtccccg tctg
//
LOCUS       DATIHC010000279         3142 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10119, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000279 DATIHC010000000
VERSION     DATIHC010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3142
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10119"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1192)
                     /locus_tag="VLF16_04485"
     CDS             complement(<1..1192)
                     /locus_tag="VLF16_04485"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017244139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HSX70170.1"
                     /translation="MLSLYHAPDLETLGALACRLLAQPQADVLAPARVVVPSQGIGRW
                     LTLQLAREQGIAMHLDVQLPSSFVWALARQVLGALPEQSAFNPQAMTWRLYDWLCEPA
                     NLARAERLERYLEGGDERRRLALAAKIADVFDQYLLYRDDWLAAWERDELCDLGPDEA
                     WQALLWQELTAGGHPHRARLLGELLARLHGAQSIEGLPERLLVFGISSLPPHHLRVLE
                     GLARHADVVIFALNPCREAWGEIRDVRELAQSEVSPEDWYLDVGHPLLASLGKQGRDF
                     FDSLLGQIAEENGIYPQDAELADDSLLHAVQNDILRLRTRAPEERLALRADDRSLELH
                     IAHSPLREVEILHDQLLARFAADPSLSPDQVVVLTPDIERYAPFIEAVFARREGAPYV
                     PYSLA"
     gene            1337..1633
                     /locus_tag="VLF16_04490"
     CDS             1337..1633
                     /locus_tag="VLF16_04490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015271022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70171.1"
                     /translation="MITHAPRRIACSDPQLAHSLRRQFGDCEVIEVPLECSRAPLCGW
                     LRDAPVGERDRVQAALNDAVATLERTRHAFRSRELGQLRQRLERLLVELSAPPE"
     gene            1790..>3142
                     /locus_tag="VLF16_04495"
     CDS             1790..>3142
                     /locus_tag="VLF16_04495"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HSX70172.1"
                     /translation="MKPEESLQELIGRIGLDAAELRERLRLLDWRHDDPPRLQQAADE
                     ASDAHRAFVDRLYEHLGHFPGPAALLSDPAGVTRLKHSQLDYYQRLWRGPYDRDYVLG
                     RLRIGLIHQLAGVEPKWYLAGYRLYLDALHGALFAEHPRAALFASLLKAVFFDMTLAI
                     DTYGAAQRRALEDSEARFARALRGANDGLWDWHLEHDRLYVSERWADMLELSRDALGE
                     GCAAWFSRVHPDDLPGLRQAIDAHLGGRTALLHHEYRMRRRRGDYLWVLARGVVELDP
                     HGQRRMAGSQTDISARKAVEQQLKHAARHDPLTGLANRLRLDELLQQTLQQLAKPGAR
                     QAALLFVDLDRFKLINDSLGHQSGDQVLVEVGRRLQQCLRPGDHLIRFGGDEFVVLLT
                     DLASMGDAEQVAQRMLDGLHHPLHLGENTLVVSASIGVAGLRASADAAEALQAADLAL
                     Y"
BASE COUNT          467 a         1141 c         1096 g          438 t
ORIGIN      
        1 cggccaggct gtagggcaca taaggcgcgc cttcgcggcg agcgaacacg gcctcgatga
       61 agggcgcgta gcgctcgatg tccggggtca gtaccaccac ctggtccggg ctcagactcg
      121 ggtcggcggc gaagcgcgcg agcagctggt cgtgcaggat ctccacctcg cgcagcggcg
      181 agtgggcgat atgcagctcc agcgagcggt cgtccgcgcg cagcgccagg cgctcttcgg
      241 gggcacgggt gcgcaggcgc aggatgtcgt tctgcacggc gtgcagcagg ctgtcatcgg
      301 ccagctcggc gtcctgcggg tagatgccgt tctcctcggc gatctgccca agcaggctgt
      361 cgaagaagtc gcggccctgc ttgcccaggc tggcgagcag cggatggccg acatccagat
      421 accagtcctc ggggctgacc tcggactgcg ccagctcgcg tacgtcgcgg atctcgcccc
      481 aggcctcgcg gcaggggttg agggcgaaga tcaccacgtc ggcatgccgc gccaaccctt
      541 ccagcacacg cagatgatgc ggcggcagcg agctgatgcc gaacaccagc aggcgctccg
      601 gcagcccttc gatggattgg gcaccgtgca ggcgcgccag cagctcgccg agcaggcgcg
      661 cgcggtgcgg gtggccgccc gcggtcagct cctgccagag cagcgcctgc caggcctcgt
      721 ccgggcccag gtcgcacagt tcgtcgcgct cccaggcggc cagccagtcg tcgcgataga
      781 gcaggtactg gtcgaacacg tcggcgatct tcgccgccag ggccaggcgg cggcgctcgt
      841 cgccgccctc cagatagcgc tcgagacgct cggcgcgggc caggttggcc ggctcgcaca
      901 gccagtcgta caggcgccag gtcatcgcct gcgggttgaa tgccgactgc tccggcaggg
      961 cgccgagcac ctggcgcgcc agggcccaga cgaagctgga cggcagctgc acgtcgaggt
     1021 gcatggcgat gccctgctcg cgcgccagct gcagcgtcag ccagcggccg atgccctggc
     1081 tcggcaccac cacccgcgcc ggcgccagca cgtcggcctg cggctgggcg agcaggcggc
     1141 aggcgagggc gccgagggtt tccaggtcgg gggcgtgata gaggctgagc atgggcatcg
     1201 tccggtcgat gggcgctagg gtagcagctc gccgccgacg aatggccggt acgcttctgg
     1261 caggcggttg atccgagtca actggccaag cgccagtatc gctatcgtgg cgtgaaaccc
     1321 ttggtcacag gccctcatga tcactcacgc tccgcgccgc atcgcctgca gcgatcccca
     1381 gctggcccac agcctgcgcc gccagttcgg cgactgcgag gtgatcgagg ttccgctcga
     1441 gtgcagccgc gcgccgctgt gcggctggct gcgggatgcg cccgtgggcg agcgggaccg
     1501 ggtgcaagcg gcgctgaacg acgccgtggc cactctggag cgcacccgcc acgccttccg
     1561 ctcgcgcgag ctgggccagc tgcggcagcg cctggagcgg ctcttggtcg aattgtcagc
     1621 accgcccgaa tgaagtagaa ctcgcgccat tcaggttccg cccctcggcg gagaccggct
     1681 ttgccgggca ggacatccgg gcctgcaaga cgaagcgccg cgacgccgcg ttcccacgaa
     1741 cgcgccgtcc ggcgcttttt ttgtgcccgc agaaaaggaa ggacacgcga tgaaaccaga
     1801 ggaaagcctg caggagctga tcggccgcat cggcctggac gccgccgagc tgcgcgagcg
     1861 cctgcgtctg ctcgactggc gccacgacga tccgccacgc ctgcaacagg ccgccgacga
     1921 ggcgagcgac gcgcaccggg ccttcgtcga ccgcctctac gagcacctcg gccacttccc
     1981 tggcccggcc gcgctgctca gtgacccggc gggcgtgacg cgcctcaagc acagccagct
     2041 cgattattac cagcgcctgt ggcgtggccc ctacgaccgc gactacgtgc tcggccgcct
     2101 gcgcatcggc ctgatccacc agctggccgg cgtcgagccc aagtggtacc tggccggtta
     2161 ccgcctgtac ctggacgccc tgcatggtgc gctgttcgcc gagcatcccc gcgccgcttt
     2221 gttcgccagc ctgctcaagg cggtgttctt cgacatgacc ctggctatcg acacctacgg
     2281 cgccgcccag cgccgcgccc tggaggacag cgaggcgcgc ttcgcccggg ccctgcgcgg
     2341 cgccaacgac ggcctctggg actggcacct ggagcacgac cggctgtatg tctccgaacg
     2401 ctgggccgac atgctcgaac tgagccgcga cgccctcggc gagggctgcg cggcctggtt
     2461 ctcgcgggtc cacccggacg atctgccggg cctgcgccaa gccatcgacg cgcacctcgg
     2521 cgggcgcacc gcgctgctgc atcacgagta ccgcatgcgg cgtcggcgtg gcgactacct
     2581 gtgggtgctg gcccgcggcg tggtcgagct cgacccgcac ggccagcggc gcatggccgg
     2641 ttcgcagacc gacatcagcg cgcgcaaggc ggtggagcag cagctcaagc acgccgcccg
     2701 ccacgacccg ctgaccggcc tggccaaccg cctgcgcctg gacgagctgc tgcaacagac
     2761 cctgcagcag ctggccaagc ccggcgcgcg ccaggccgcg ctgctgttcg tcgacctcga
     2821 ccgcttcaag ctgatcaacg acagcctcgg tcaccagagt ggcgaccagg tgctggtcga
     2881 ggtcggccgc cgcctgcagc agtgcctgcg ccccggcgac cacctgatcc gcttcggcgg
     2941 cgacgagttc gtcgtgctgc tcaccgacct ggccagcatg ggcgacgccg agcaggtggc
     3001 gcagcgcatg ctcgacggcc tgcaccaccc gctgcacctg ggcgaaaaca ccctggtggt
     3061 cagcgccagc atcggcgtgg ccgggctgcg cgccagcgcc gacgccgccg aggcgctgca
     3121 ggccgccgac ctggcgctgt ac
//
LOCUS       DATIHC010000280         2731 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7764, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000280 DATIHC010000000
VERSION     DATIHC010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2731)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2731
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7764"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..363
                     /locus_tag="VLF16_04500"
     CDS             <1..363
                     /locus_tag="VLF16_04500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70173.1"
                     /translation="ILNANEIAAEIAAAIQGGLSTSASPILYDSVNINPSAVVAGTGV
                     NQTLFAANTARRGLILKNASGLNRIYYNFGADATANSLFVEPGETLEMQAHERDLRAF
                     NIFCTSGTPLRAAEIVAV"
     gene            375..899
                     /locus_tag="VLF16_04505"
     CDS             375..899
                     /locus_tag="VLF16_04505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70174.1"
                     /translation="MHGNFKFRFEPRWEVFRLGADDAGFTSAPGSSEVLVPGCQVLLP
                     VGVLLPGRILEVFFGGAKTSNAETFTPRIHLGPAGTLADPTLAGFNPAIAATTRSFDA
                     GARFKVRTNTTIQRVGSTQGTAFYGNSATGAEVAADTISDVTTTPLYVSLSGQMGGTV
                     EWVKIQHMAIVISG"
     gene            913..>2731
                     /locus_tag="VLF16_04510"
     CDS             913..>2731
                     /locus_tag="VLF16_04510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70175.1"
                     /translation="MPTNKKWGTEYLGHYALNGEGGGPDNEELLAEIKDLPYFKGIQR
                     RFTWKDFEGATPGSYNFSALITFLNVVQSYGKKLSILLMYKSFGGKAVPAYISKTPTD
                     AGYNPVYTTDGWYGTYKWGKITEIAAFFNTAVTDRFILFLQAMAAAVDDHPALANIMM
                     NETTMGSPVPALTTAQKTAIGLSMARIMQECVPSFAKTPIGWFVNFPNSSSYSIIDVL
                     PPKLQEYGAVLGGPDTWFHDITLENGVVPEYFDSWNDGAPINPRGPSVQNANYRYYNH
                     ADQSAPDGGIIRTDIPIEKLFNRVTGTPDVFNASGITGGTRQPWHANYVNWSAWNSKT
                     LGTERRPWTELKALLASYYATGGRFAGSTTPGIDLTIPLKYESGAAPGTLPKLVASLV
                     TDAGPSNTDKITNVGTVTSDALATGATRQFRKGASGTWSNTQQAVTQGLNTYYVRQTK
                     SGSTPSEPSDPLTFTFSDVKPARLMATIDDNVVLVSFDGPVDLSNTAGYKPSHNDFTL
                     AVGDATTPPTKTGSFVNETGMNFRLDLGSNAVAGKTYTLTYVKGTAPARLQDKAGNEV
                     DAFAAIPLYNLTGLGNPTHVVTVTGIPGVSSSGGYTNDRN"
BASE COUNT          588 a          844 c          760 g          539 t
ORIGIN      
        1 atccttaacg ccaacgaaat cgctgctgaa atcgctgccg ccatccaagg cggcctcagc
       61 acttcagcgt caccgatcct ctacgattcg gtgaacatca atccgtctgc agtcgttgcc
      121 ggaactggcg tcaaccaaac gctgttcgcc gccaacaccg cgaggcgcgg cctcatcctg
      181 aagaacgcca gcggtctgaa tcgcatctat tacaacttcg gtgcggacgc aaccgccaac
      241 tcgcttttcg tagagcccgg cgaaacgctg gagatgcagg cccatgagcg cgacctgcgt
      301 gccttcaaca tcttctgcac tagcggcacg ccgcttcgcg ccgctgaaat cgttgcggtc
      361 taaaggagta agccatgcac ggcaatttca agttccgctt cgagcctcgc tgggaggtgt
      421 tcaggctggg cgccgacgac gccggcttca cctccgcgcc gggctcctcc gaggtgctgg
      481 tgcctgggtg ccaagtcctg ctgcctgtcg gcgtgcttct gcctggacgc atccttgagg
      541 tgttcttcgg cggcgccaag acctccaacg ccgaaacctt cacgcctcgc attcacctgg
      601 ggcctgccgg gacgctggcc gaccccactc tggccggatt caaccctgcc atagctgcca
      661 ccacacgcag cttcgatgct ggtgcgcgct tcaaggttcg caccaatacg accatccagc
      721 gtgtcggttc cacgcaggga actgccttct atggcaactc agccactggt gctgaagttg
      781 cggctgacac catttccgat gtgacgacca cgccgctata tgtgtccttg agtgggcaga
      841 tgggaggcac tgttgagtgg gtaaagattc agcacatggc aatcgtcatc agcggctaag
      901 aaaggaacga tcatgccgac caacaaaaag tggggtactg agtaccttgg tcactacgca
      961 ctgaacggag aaggaggagg accggacaac gaggaactgc tcgctgaaat caaggacttg
     1021 ccctacttca agggcatcca gcggcgcttc acttggaagg acttcgaggg cgccactcct
     1081 ggcagctaca acttcagcgc cctcatcacg ttcctcaacg tggttcagtc ctatggcaag
     1141 aaactgagca tcctgctcat gtataagtcc ttcggtggaa aggctgtccc tgcgtacatt
     1201 tccaagactc cgacggatgc tgggtacaac cccgtttaca cgacggatgg ctggtatggc
     1261 acctacaagt ggggaaagat caccgagatt gccgcgttct tcaataccgc agtgacggac
     1321 agattcatcc tgttcttgca ggctatggct gcagcggtgg atgaccaccc ggcactcgcc
     1381 aacatcatga tgaacgagac aacgatgggc tctcctgtgc ccgcgttgac tactgcgcaa
     1441 aagacagcca ttggcctgag catggctcgc atcatgcagg agtgcgtccc ttcattcgcc
     1501 aagacgccga ttggatggtt cgtcaacttc cccaacagta gctcctattc gatcatcgac
     1561 gttttgccgc cgaagctgca ggagtacggg gctgtgcttg gtggccccga tacttggttc
     1621 cacgacatca cgcttgagaa cggcgtggtt cctgaatact tcgactcttg gaacgacggc
     1681 gcaccgatca accctcgcgg cccttcggtg cagaacgcca actatcggta ttacaaccac
     1741 gcggaccaat cggcccctga tggcggcatc attcgcacgg acattccaat cgagaagctg
     1801 ttcaaccggg ttactggcac gcctgatgtg ttcaacgctt cgggcatcac tggcggcacg
     1861 cggcaaccgt ggcatgccaa ctacgtcaac tggtcagcct ggaactcaaa gactcttggc
     1921 accgagcgtc gtccgtggac tgaactgaag gctctgctgg cttcgtacta tgcgactgga
     1981 ggacgcttcg caggcagcac gactcctggc atcgacctca ccatccccct gaagtacgag
     2041 agcggagccg ctccgggcac gctgccgaag ctggtagcgt cgcttgtgac tgatgccggg
     2101 ccgtccaata ccgacaagat cacgaacgta ggcactgtga cttccgatgc gctggcaact
     2161 ggtgcaactc gccagttccg caagggcgca agcggcactt ggtcgaatac gcagcaagca
     2221 gtgacgcagg gcttgaacac ctactacgtc aggcagacca agagcggcag cacgccatca
     2281 gagccgagcg acccgctgac gttcacgttc agtgatgtca agccggcgcg gctgatggcg
     2341 accattgacg acaacgtggt gcttgtctcg ttcgacggtc ctgttgacct gtcaaacacc
     2401 gctgggtaca agcccagcca caacgacttc acgcttgctg tcggagatgc gacgacgccg
     2461 ccgacaaaga ctggctcttt cgtcaacgag actggaatga acttcaggct cgacctgggc
     2521 agcaatgctg tcgcaggaaa gacctatacg ctgacatacg tgaagggcac ggcgccggct
     2581 aggctgcagg acaaggctgg taacgaggtc gatgcattcg cagcaatacc gctctataac
     2641 cttaccggcc ttggcaaccc tacccatgtg gtgactgtca ccggcatccc tggcgtgagt
     2701 tcttctggcg gctacacgaa cgaccgcaac t
//
LOCUS       DATIHC010000281         2052 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42780, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000281 DATIHC010000000
VERSION     DATIHC010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42780"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(36..488)
                     /gene="fkpB"
                     /locus_tag="VLF16_04515"
     CDS             complement(36..488)
                     /gene="fkpB"
                     /locus_tag="VLF16_04515"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013714182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HSX70176.1"
                     /translation="MTDPFSQELRIGPDKEVTLHFALKLENGDVVDSTFDKQPATFKV
                     GDGNLLPGFEAALYGFKAGDKRSLQIAPENAFGQPNPQNVQVMPRSQFQDMELSEGLL
                     VIFNDAANAELPGVVKAFDDAQVTVDFNHPLAGKTLSFDVEIIEVRQA"
     gene            complement(481..990)
                     /gene="lspA"
                     /locus_tag="VLF16_04520"
     CDS             complement(481..990)
                     /gene="lspA"
                     /locus_tag="VLF16_04520"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004884059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HSX70177.1"
                     /translation="MSDASRFGRLAWLWLAVLVFVLDQGSKQIVLQVLEYGQRVTVID
                     GYFDWVHVYNRGAAFSFLAGESGWQRWLFAAIAIGVSAVLVVWMRRLKHDETWLAIAL
                     ALVLGGALGNLYDRVVLGHVVDFILVHWQDQHRFPAFNLADSGITVGAVMLALDMFKS
                     KKSGEPAHD"
     gene            complement(983..>2052)
                     /locus_tag="VLF16_04525"
     CDS             complement(983..>2052)
                     /locus_tag="VLF16_04525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HSX70178.1"
                     /translation="HAPYRALLTHGFTVDENGRKMSKSLGNVIAPQEVTDSLGADILR
                     LWVSATDYSGEMAVSKVILQRSADAYRRIRNTMRFLLANLGDFDPAKDLLPAEQMLDL
                     DRWAVDAAARLQAEIIEAYGEYRFWNVYSKVHNFCVQELGGFYLDVIKDRQYTTGADS
                     AARRSGQSAQYHIAEALVRWIAPILAFTADEIWSFLPGERNESVMLNTWYEGLDRLPE
                     GFELDRAYWEQLTAVRAAVNKELENLRNSKAIGGNLQAEVTLYGDEPLQQSLAKLDDE
                     LRFALITSAATVAPLAAAPADAVATEVPGLKLKIVKSAHAKCGRCWNFVADVGSHANH
                     PELCGRCISNIEGEGEVRKHV"
BASE COUNT          358 a          649 c          684 g          361 t
ORIGIN      
        1 cgatggggag agtgtacgcc tctccccgag aggggtcagg cctggcgaac ttcgatgatt
       61 tccacgtcga agctcagggt cttgccggcc aggggatggt tgaagtcgac ggtcacctgc
      121 gcgtcgtcga acgccttgac cacgcccggc agctcggcat tggcggcatc gttgaagatc
      181 accagcaacc cctcggacag ctccatgtcc tggaactggc tacgcggcat cacctgtacg
      241 ttctgcggat tgggctggcc gaaggcgttc tccggcgcga tctgcaggct gcgcttgtcg
      301 ccagccttga agccgtagag cgcggcttcg aagcccggca gcaggttgcc gtcgccgacc
      361 ttgaacgtgg ccggctgctt gtcgaaggtg ctgtcgacca cgtcgccgtt ttccagcttg
      421 agggcgaaat gcagggtgac ttccttgtcc ggcccgatac gcagctcttg ggagaaggga
      481 tcagtcatgc gcgggttctc cggacttctt gctcttgaac atgtccagcg ccagcatcac
      541 ggcgccgacg gtgatgccgc tgtcggccag gttgaaggcc gggaagcggt gctggtcctg
      601 ccagtgcacc aggatgaaat cgaccacatg gccgagcacg acgcggtcgt agaggttgcc
      661 cagcgcaccg cccagaacca gcgcgagggc gatggccagc caggtttcgt catgcttgag
      721 gcgcctcatc cacaccacca gcacggcact gacaccgatg gcgatggcgg cgaacagcca
      781 gcgctgccag ccggactcac cagccaggaa gctgaaggcg gcgccacggt tgtacacgtg
      841 gacccagtcg aagtagccgt cgatgaccgt gacgcgctga ccgtactcca gcacctgcag
      901 cacgatctgc ttgctgcctt ggtcgagaac gaacaccagc acggccagcc acagccaggc
      961 cagacgaccg aaacgcgagg cgtcagacat gcttgcgcac ctcaccctcg ccttcgatgt
     1021 tgctgatgca gcggccacac agctcgggat ggttggcatg gctgccgacg tccgccacga
     1081 agttccagca gcgaccgcac ttggcgtggg ccgacttgac gatcttcagc ttgaggcccg
     1141 gtacctcggt ggctaccgcg tcagccggcg cagcggccag cggcgcgacg gtcgcggcgg
     1201 aggtgatcag ggcgaagcgc agctcgtcgt cgagcttggc cagggactgt tgcagcggct
     1261 cgtcgccata gagggtgacc tcggcctgca gattgccgcc gatggcctta ctgttgcgca
     1321 ggttctccag ctccttgttc accgcggcgc gaacggcggt gagctgctcc cagtaggcac
     1381 ggtccagttc gaagccttcc ggcaggcggt cgaggccttc gtaccaggta ttgagcatca
     1441 ccgactcgtt gcgctcgccc ggcaggaacg accagatctc gtcggcggtg aaagccagga
     1501 tcggcgcgat ccagcgtacc agcgcctcgg cgatgtggta ctgggcactc tggccggagc
     1561 ggcgcgcggc gctgtcggcg ccggtggtgt actgacgatc cttgatcacg tccagataga
     1621 agccgcccag ttcctggacg cagaaattgt gcaccttgga gtagacgttc cagaagcgat
     1681 actcgccgta ggcctcgatg atctcggcct gcaggcgcgc ggcggcgtcc accgcccagc
     1741 gatcgaggtc gagcatctgc tcggccggca gcaggtcctt ggccggatcg aagtcgccga
     1801 gattggccag caggaagcgc atggtgttgc ggatacggcg gtaggcgtcg gcactgcgct
     1861 gcaggatgac cttggatacg gccatctcgc cggagtagtc ggtggccgag acccacaggc
     1921 gcagaatgtc ggctcccagg ctgtctgtca cttcctgcgg cgcgatcacg ttgccgaggg
     1981 acttggacat cttgcgaccg ttctcgtcca cggtgaaacc gtgggtcagc agcgcgcgat
     2041 acggcgcgtg ac
//
LOCUS       DATIHC010000282         1778 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5604, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000282 DATIHC010000000
VERSION     DATIHC010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1778
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5604"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1270
                     /gene="rsmB"
                     /locus_tag="VLF16_04530"
     CDS             <1..1270
                     /gene="rsmB"
                     /locus_tag="VLF16_04530"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011911270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HSX70179.1"
                     /translation="LNGKASLGSSLPPLLDRVEPRDRGLAQDLAFGTARWQPRLQLLA
                     DKLLQKPFKAADRDVEALLLVGLYQLLHTRIPAHAAIGETVACVDKLKKSSLKGLLNG
                     VLRNAQREHEALFAELDRDPVLHTAHPRWLQKRLKADWPEHWQAICDANNQHPPLLLR
                     VNRRHGSRDAYLAELRGADLEAEPCAFSRDGIRLLQPCDVTTLPGFAEGRVSVQDEAA
                     QLAADLLDLAPGQRVLDACAAPGGKTCHLLEAQPQLSEVIALDLEPSRLARVQENLDR
                     LKLEATLIAADGRDVAAWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDITALA
                     QLQGELLDALWPTLEVGGVLLYATCSVLPEENRDNIAAFLARTPGARELDIPGAFGLK
                     QAHGRQLLPQAEGHDGFYYAKLIKIAASRG"
     gene            1283..>1778
                     /locus_tag="VLF16_04535"
     CDS             1283..>1778
                     /locus_tag="VLF16_04535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004125888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-binding protein"
                     /protein_id="HSX70180.1"
                     /translation="MKIIILGAGQVGGTLAEHLASEANDITVVDTDADRLRDLGDRLD
                     IRTVVGRGSFPTVLRQAGADDADMLVAVTNSDETNMVACQVAYTLFHTPTKIARVRES
                     AYLTREALFDNEAIPVDVLISPEQVVTNYIKRLIEYPGALQVIDFAEGKAQLVAVKAY
                     YGGPL"
BASE COUNT          293 a          671 c          568 g          246 t
ORIGIN      
        1 gctcaacggc aaggcctcgc tgggcagcag cctgccgcca ctgctggaca gggtcgagcc
       61 gcgtgaccgc ggcctggccc aggacctggc cttcggcacc gcacgctggc aaccgcgcct
      121 gcagctgctc gccgacaagc tgctgcagaa gccgttcaag gcggccgacc gcgacgtcga
      181 ggcccttctg ctggttggcc tgtaccagct gctgcacacc cgcatccccg cccacgccgc
      241 catcggcgag acggtggcct gcgtcgacaa gctgaagaag tcctcgctca agggcctgct
      301 caacggcgtg ctgcgcaacg cccagcgcga gcacgaggcg ctgtttgccg aactggatcg
      361 cgacccggtg ctgcacaccg cccacccacg ctggctgcag aagcgcctga aggccgactg
      421 gcccgagcac tggcaggcga tctgcgacgc caacaaccag cacccgccgc tgctgctgcg
      481 ggtcaatcgc cgccatggca gccgtgatgc ctacctcgcc gaactgcgcg gcgccgacct
      541 cgaagccgag ccttgcgcct tcagccgcga cggcatccgt ctgctgcagc cctgtgatgt
      601 gacgacacta ccgggcttcg ccgagggccg cgtcagcgtc caggacgaag ccgcccagct
      661 ggccgccgac ctgctggatc tggcgcccgg ccagcgcgtg ctggacgcct gcgcggcacc
      721 cggcggcaag acctgtcatc tgctggaagc ccagccgcaa ctgagcgaag tgatcgccct
      781 ggatctggag ccgagtcgcc tggcccgggt gcaggagaac ctcgaccgcc tcaagctcga
      841 ggccaccctg atcgccgccg acggccgcga cgtggccgcc tggtgggacg gcaagccgtt
      901 ccagcgcatc ctgctcgacg cgccctgctc ggccaccggg gtgatccgcc gccacccgga
      961 catcaagctg actcgccagg ccgacgacat caccgccctg gcccaactgc agggcgagct
     1021 gctcgatgcc ctgtggccga ccctggaggt cggcggcgtg ctgctctacg ccacctgctc
     1081 ggtgctgccg gaggagaatc gcgacaatat cgccgccttt ctcgcccgca cccccggcgc
     1141 gcgcgagctg gatattcccg gcgccttcgg cctcaagcag gcccacggcc gccagctgct
     1201 gccgcaggcc gagggccacg acggcttcta ctatgccaag ctgatcaaga tcgccgcgtc
     1261 acgcggctaa cggagtgatc gcgtgaaaat catcattctc ggcgcagggc aggtcggcgg
     1321 caccctggcg gagcacctgg ccagcgaggc caacgacatc accgtggtcg acaccgatgc
     1381 cgaccgcctg cgcgacctcg gcgaccgcct ggacatccgt accgtggtgg gccgcggctc
     1441 cttccccacc gtgctgcgcc aggccggtgc cgacgacgcc gacatgctgg tggcggtgac
     1501 caacagcgac gagaccaaca tggtcgcctg ccaagtcgcc tacaccctgt tccacacccc
     1561 gaccaagatc gcccgggtgc gcgagtcggc ctacctgacc cgcgaggcgc tgttcgacaa
     1621 cgaggccatc ccggtcgacg tgctgatcag ccccgaacag gtggtgacca actacatcaa
     1681 gcgcctgatc gaataccccg gcgccctgca ggtgatcgac ttcgccgagg gcaaggccca
     1741 gctggtggcg gtcaaggctt actacggcgg gccgctgg
//
LOCUS       DATIHC010000283         2052 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5611, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000283 DATIHC010000000
VERSION     DATIHC010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5611"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..338)
                     /locus_tag="VLF16_04540"
     CDS             complement(<1..338)
                     /locus_tag="VLF16_04540"
                     /inference="COORDINATES: protein motif:HMM:NF017078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHASE4 domain-containing protein"
                     /protein_id="HSX70181.1"
                     /translation="MTLRKRLFWLFAPLLLLALGFAYLLSQNLILSRFDRQDAALLDA
                     EARRLQGLLDHNLKRNLDLVLSYAKWDDSYDFMRGQRPDFVRRNMDPEALRQMNFDFM
                     LLLDLEDRVHA"
     gene            559..1506
                     /gene="trxB"
                     /locus_tag="VLF16_04545"
     CDS             559..1506
                     /gene="trxB"
                     /locus_tag="VLF16_04545"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003459448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HSX70182.1"
                     /translation="MTATRHARVIILGSGPAGYSAAVYAARANLKPLLITGIQAGGQL
                     TTTTEVDNWPGDPHGLTGPALMQRMQEHAERFETEIVFDHINAVDLAGKPFTLIGDSG
                     TYTADALIIATGASARYLGLPTEQAFMGKGVSACATCDGFFYRNREVAVVGGGNTAVE
                     EALYLANIASKVTLVHRRETFRAEKILQDKLKARVAEGKIELRLNAEVDEVLGEASGV
                     TGVRLKHNDGAGSELKVDGLFVAIGHTPNTSLFEGQLALRDGYLVVNGGRDGNATATS
                     IPGVFAAGDVADSVYRQAITSAGAGCMAALDVERYLDSL"
     gene            complement(1510..2049)
                     /locus_tag="VLF16_04550"
     CDS             complement(1510..2049)
                     /locus_tag="VLF16_04550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014822004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HSX70183.1"
                     /translation="MHAIIRACPEHLRILRLVRDLNLADGWIAAGFVRSAVWDHLHGL
                     AGSPSAADIDIIWFDPRATARADADIEAALRRIDPGLRWSVKNQARMHLRNGDAPYAS
                     ASEAMTHWPETATAVAVRLSREDRLEVAAPLGLDDLFALLVRPTAAFRGDKHELYLVR
                     LAAKNWRARWPRLDIRCAG"
BASE COUNT          339 a          697 c          697 g          319 t
ORIGIN      
        1 gcgtggaccc ggtcctccag gtcgagcagc agcatgaagt cgaaattcat ctggcgcagc
       61 gcttccgggt ccatgttgcg gcgcacgaag tccggacgct ggccgcgcat gaagtcgtag
      121 ctgtcgtccc acttggcgta gctcagcacc aggtcgaggt tgcgcttgag gttgtggtcg
      181 agcaggccct gcaggcgcct ggcctcggca tccagcaggg cagcgtcctg gcggtcgaag
      241 cggctgagaa tgaggttctg cgacaacagg taggcgaagc ccagagccag caacagcagt
      301 ggggcgaaca gccagaacag acgtttgcgc agagtcatgc cgtcggtagc cgtaggagcg
      361 gggagtcggg tcagtatagt cgagggcacc tggcggcccg gcgaggatag gtcggcgcta
      421 tcggcaacat tgagaatggg cattttcgtc cgtcgcggcg tgccgatagc cttgcgctca
      481 attccccttg ccggggccgt ccagtcccaa gccttcccct agtgcttcgg acggtccctt
      541 tttcttcagg agttggtcat gaccgccacc cgccatgccc gcgtcatcat cctcggctcc
      601 ggccccgccg gttacagcgc cgccgtgtac gccgcccgcg ccaacctcaa gccgctgctg
      661 atcaccggca tccaggccgg tggccagctg acgaccacca ccgaggtcga caactggccc
      721 ggcgatcccc acggcctgac cggcccggcg ctgatgcagc gcatgcagga gcacgccgag
      781 cgcttcgaga ccgagatcgt cttcgatcac atcaacgccg tggacctggc cggcaagccc
      841 ttcaccctga tcggcgacag cggcacctac accgccgatg cgctgatcat cgccaccggc
      901 gccagcgccc gctacctggg cctgcccacg gagcaggcct tcatgggcaa gggcgtgtcc
      961 gcctgcgcca cctgcgacgg cttcttctac cgcaaccgcg aagtggcggt ggtcggcggc
     1021 ggcaataccg cggtggaaga ggcgctgtac ctggccaaca tcgccagcaa ggtgaccctg
     1081 gtgcatcgtc gcgagacctt ccgcgccgag aagatcctgc aggacaagct caaggcacgc
     1141 gtagccgagg gcaagatcga gctgcgcctg aatgccgagg tggacgaagt gctgggcgaa
     1201 gccagcggcg tgaccggcgt gcgcctgaag cacaacgacg gcgccggcag cgagctgaag
     1261 gtggacgggc tgttcgtcgc catcggccac acgccgaaca cctcgctgtt cgagggccaa
     1321 ctggcgctgc gcgacggcta tctggtggtc aatggcgggc gcgacggcaa tgccaccgcc
     1381 accagcatcc ccggcgtgtt cgccgccggc gacgtggccg actcggtgta ccgccaggcc
     1441 atcacctcgg ccggcgccgg ctgcatggcg gcgctggatg tggagcgcta tctggattcg
     1501 ctgtagttct cagccggcgc agcggatatc cagcctcggc cagcgggcgc gccagttctt
     1561 ggcggcgagg cggaccagat acagctcgtg cttgtcgccg cgaaacgccg cggtcggccg
     1621 cacgagcagg gcgaacaggt cgtcgagccc cagcggtgcg gcgacctcca gcctgtcttc
     1681 tcggctcagc ctcaccgcca ccgccgtggc ggtttccggc cagtgcgtca tcgcctcgct
     1741 cgccgacgcg tagggcgcgt cgccgttgcg caggtgcatg cgcgcctggt tcttcaccga
     1801 ccagcgcagc ccggggtcga tgcgccgcag tgccgcttcg atgtcggcat cggcccgcgc
     1861 cgtggcccgt gggtcgaacc agatgatgtc gatgtctgcc gccgatggcg aacccgccag
     1921 gccgtgcagg tgatcccaga cggcgctgcg aacgaagccg gcggcgatcc agccatccgc
     1981 aagattcaga tcccgcacga ggcgcaggat gcgcaggtgt tcgggacagg cgcggatgat
     2041 ggcatgcagg gc
//
LOCUS       DATIHC010000284         1933 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_3116, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000284 DATIHC010000000
VERSION     DATIHC010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1933
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3116"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1898
                     /locus_tag="VLF16_04555"
     CDS             <1..1898
                     /locus_tag="VLF16_04555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014590884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0015343 - siderophore-iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HSX70184.1"
                     /translation="DTPQSIQVVPTQVIEDLNSTRIDRALDFAGGVSRQNNFGGLTFL
                     NYSVRGFTTSELYRNGFAVSRGSYSAPDTSAIERIEVLKGPSASLYGRGDPGGLVNIV
                     SKRPQAEAFSTLNLSAGSWDRYRTSLDANTPLNEDGSLLSRINLAVEDNGSFRDHVGN
                     SRQVVTPSLSWQLDPDTLLMLDAEFSRTESVFDRGIPAVNGELGSVQRSTFLGEPNDG
                     EIRNDNQTLDLALERWLNDDWKLRLANHYTQGHLRGDSSETQKLVGDTITRFYRERDF
                     EWNDSITQVELHGRFELGGWEHQSLIGLEYENYRNSQKYPQSDTLLEYGQDIYRPVYG
                     RPKPPITKPNDFFEQTESYALNLQDQIVFNERLRGLLGVRLERVEQDSLNRTTGARTG
                     QDKDVATPRIGVLYQLTPEVGVFANAASSFKPNALGTQGQVYKPEKGLGYETGLKLDL
                     LDGRLGATVALFHIDKENVVTTDATGESVAAGEARSQGLDLQFSGQLSDAVRVIGAYA
                     YIDAEVTKGDAAIPEGSDLLGIARHSGSLMAVYEFQGGALQGSDIGAAVTHVGERSGQ
                     AGSDFRLPAYETLDLLAHYKASEDLTLGVNLNNVFDRKYYERGYNSVWVLPGEPRNLS
                     FSLSLQL"
BASE COUNT          374 a          710 c          588 g          261 t
ORIGIN      
        1 gcgacacgcc gcagagcatc caggtcgtgc cgacccaggt gatcgaggac ctcaacagca
       61 cgcgcatcga ccgcgccctg gacttcgccg gtggcgtttc gcggcagaac aacttcggcg
      121 gcctgacctt cctcaactac agcgtgcgcg gcttcaccac cagcgagctg taccgcaacg
      181 gcttcgccgt cagtcgcggc agctatagcg cgccggacac ctcggccatc gagcgcatcg
      241 aagtgctcaa gggcccctcg gccagcctgt acggacgtgg cgaccccggc ggcctggtca
      301 acatcgtcag caagcgcccg caggcggagg cgttcagcac cctcaacctc agcgccggca
      361 gctgggatcg ctaccgcacc agcctggacg ccaacacccc gctcaacgag gacggcagcc
      421 tgctgtcgcg gatcaacctg gcggtggaag acaacggcag cttccgcgac cacgtcggca
      481 acagccgtca ggtggtcacc ccgtcgctga gctggcagct cgaccccgac accctgctga
      541 tgctcgacgc cgagttctcc cgcaccgaat cggtgttcga ccgcggcatt ccggcggtga
      601 acggcgagct gggctcggtg cagcgctcga ccttcctcgg cgagccgaac gacggcgaga
      661 tccgcaacga caaccagacc ctggacctgg cgctggaacg ctggctcaac gatgactgga
      721 agctgcgcct ggccaaccac tacacccagg gtcatctgcg cggcgacagt tctgagacgc
      781 agaagctggt cggcgacacc atcacccgct tctaccgcga gcgcgacttc gagtggaacg
      841 acagcatcac ccaggtcgag ctgcacggcc gcttcgagct gggcggctgg gagcaccaga
      901 gcctgatcgg cctggagtac gagaactacc gcaacagcca gaagtacccg cagagcgaca
      961 ccctgctgga gtacggccag gacatctaca ggccggtgta cggccggccc aagccgccga
     1021 tcaccaagcc caacgacttc ttcgaacaga ccgagagcta cgccctcaac ctgcaggacc
     1081 agatcgtctt caacgagcgc ctgcgcggcc tgctcggcgt gcgcctggag cgggtcgagc
     1141 aggactcgct caaccgcacc accggcgcca ggaccggcca ggacaaggac gtcgccaccc
     1201 cgcgcatcgg cgtgctctac cagctcaccc ccgaggtcgg cgtgttcgcc aacgccgcct
     1261 cgtccttcaa gcccaacgcc ctcggcaccc agggccaggt ctataaaccg gagaaaggcc
     1321 tgggctacga gaccgggctg aagctcgacc tgctcgacgg ccgcctgggc gccaccgtcg
     1381 cgctgttcca catcgacaag gagaacgtgg tcaccaccga tgccaccggc gaaagcgtgg
     1441 cggccggcga agcgcgcagc cagggcctcg acctgcagtt cagcggccag ttgagcgacg
     1501 cggtccgggt gatcggcgcc tacgcctaca tcgatgcgga agtgaccaag ggcgacgccg
     1561 ccattcccga aggcagcgac ctgctcggca tcgcccgcca cagtggcagc ctgatggcgg
     1621 tctacgagtt ccagggcggc gcgctgcagg gctcggatat cggcgcggcc gtcacccatg
     1681 tcggcgaacg ctccggccag gccggcagcg acttccgcct gcccgcctac gagaccctgg
     1741 acctgctcgc ccactacaag gccagcgagg acctcacgct gggcgtgaac ctcaacaacg
     1801 tcttcgaccg caagtactac gagcgtggct acaacagcgt ctgggtcctg cccggcgagc
     1861 cgcgcaacct cagtttcagc ctctccctcc agctctgaca caaggaaaac cacgatgcac
     1921 aagtccgttc ccc
//
LOCUS       DATIHC010000285         2771 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_44716, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000285 DATIHC010000000
VERSION     DATIHC010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2771
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44716"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..710)
                     /locus_tag="VLF16_04560"
     CDS             complement(<1..710)
                     /locus_tag="VLF16_04560"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HSX70185.1"
                     /translation="MIPTPPSNTVDFDAAKLQRLGYASRGQRLLKPVSLAQLRQQLSL
                     QLQTSLEVDRILDLFFREVQRLVPLDALSYQLAARDLRIELGARANHSAAYRLSHQGE
                     YMGELTFRRNQRFSDEELGQLESLLASLLFPLRNALLYRAALQSALRDPLTDTGNRIA
                     MNQAMQREVDLARRSLQPLSVLMVDIDLFKNINDRFGHATGDEVLKGVAAVIKGSLRN
                     IDMVFRYGGEEFLVLLANT"
     gene            complement(916..1656)
                     /locus_tag="VLF16_04565"
     CDS             complement(916..1656)
                     /locus_tag="VLF16_04565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YciK family oxidoreductase"
                     /protein_id="HSX70186.1"
                     /translation="MFDYSARPDLLKGRVILVTGAGRGIGAAAAKAYAAHGATVLLLG
                     KTEENLNQVYDEIEAAGHPQPVVIPFNLETALPHQYDELAATVEAEFGRLDGLLHNAA
                     IVGPRTPLEQLSGDNFMRVMQINVNAMFMLTSTLLPLLKLSDDASVVFTSSSVGRKGR
                     AYWGAYGVSKFATEGLMQTLADEVEGVSKVRANSVNPGATRTGMRAQAYPGENPANNP
                     LPEDIMPVYLYLMGPDSRDTNGKAFDAQ"
     gene            complement(1687..2358)
                     /gene="mupP"
                     /locus_tag="VLF16_04570"
     CDS             complement(1687..2358)
                     /gene="mupP"
                     /locus_tag="VLF16_04570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014853277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate phosphatase
                     MupP"
                     /protein_id="HSX70187.1"
                     /translation="MTLRAVLFDMDGTLLDTAPDFVAVCQAMRAAHCLEPIDDQLVRD
                     VISGGARAMVAATFGIEVGAEGFEALRLEFLERYQQHCAVLSKPFDGMLELLDDIERA
                     RLIWGVATNKPVIFAEPIMQQLELADRSAVLVCPDHVARSKPAPDMLLLACEKIGIAP
                     ADVLFIGDDARDIEAGRAAGCKTAAVTYGYIHPEDNPRHWGADVVVDHPLELRAVLDR
                     ALCSC"
     gene            complement(2363..>2771)
                     /gene="ubiG"
                     /locus_tag="VLF16_04575"
     CDS             complement(2363..>2771)
                     /gene="ubiG"
                     /locus_tag="VLF16_04575"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003172645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008689 - 3-demethylubiquinone-9
                     3-O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HSX70188.1"
                     /translation="YRQITAEALAEEMPGQFDVVTCLEMLEHVPDPSSVIRACHKMVK
                     PGGQVFFSTINRNPKAYLFAVVGAEYLLRLLPRGTHDFKKFIRPSELGAWSRAAGLQV
                     KDIIGLTYNPLTKHYKLEADVDVNYMIQTLREE"
BASE COUNT          436 a          838 c          991 g          506 t
ORIGIN      
        1 gtattggcca gcagcaccag gaattcctcg ccgccgtagc ggaacaccat gtcgatattg
       61 cgcaggctgc ccttgatcac ggcggccacg cctttcagca cttcgtcgcc ggtggcgtgg
      121 ccgaagcggt cgttgatgtt cttgaagaga tcgatgtcga ccatcagcac cgacagcggc
      181 tgcaggctgc gacgggccag gtcgacctcg cgctgcatcg cctggttcat ggcgatgcgg
      241 ttgccggtgt cggtcagtgg gtcgcgcagc gcgctctgca gcgcggcgcg gtagagcagg
      301 gcattgcgca gcgggaacag caggctggcc agcagggatt ccagctggcc gagttcctcg
      361 tcgctgaagc gctgattgcg gcggaaagtc agctcgccca tgtattcgcc ctggtggctc
      421 aggcgatagg cggccgaatg gttggcgcgg gcgcccagct cgatgcgcag atcgcgggcc
      481 gccaactgat agctcagggc atccagcggc accaggcgct gcacttcgcg gaagaacagg
      541 tcgaggatgc ggtcgacttc cagtgaggtc tgcagctgca ggctcaattg ctggcgcagc
      601 tgcgccaggc tgaccggctt aagcaggcgc tggccacggc tcgcgtagcc cagacgctgc
      661 agtttggcgg catcgaaatc gacggtgttg gacggggggg ttggaatcat gctgctcgac
      721 ctctggcgct tgagcgcccg ttggccgaga tagagctaat tctgtgccac tttagaaaat
      781 ctcttttatt tcatgcgctt aagagatttg tgagtgcgtg tccggcaatg cattgccgtc
      841 gcgttgacgc cgatgctggc aatctgatgc cgctgcgctt gcagccgccg gaaaaccggc
      901 ggccgctcgg ccaacctatt gggcgtcgaa ggccttgcca ttcgtgtccc ggctgtccgg
      961 gcccatcagg tacaggtaga ccggcatgat gtcttccggc agcggattgt tcgccggatt
     1021 ctcgcccggg taggcctgcg cgcgcatgcc ggtgcgggtc gcgccggggt tgacgctgtt
     1081 ggcgcgtacc ttggatacgc cttctacctc gtcggccagg gtctgcatca ggccctcggt
     1141 ggcgaacttc gacacgccgt aggcgcccca gtaggcgcgg cccttgcggc cgacgctgct
     1201 ggaggtgaat accaccgagg cgtcgtcgga gagcttgagc agcggcagca gggtgctggt
     1261 cagcatgaac atggcgttga cgttgatctg catgacgcgc atgaaattgt cgccggacag
     1321 ctgctccagc ggcgtgcgcg ggccgacgat ggcggcgttg tgcagcaggc cgtcgaggcg
     1381 accgaactcg gcctccacag tggctgccag ttcgtcgtac tggtgcggca gggcggtttc
     1441 caggttgaac gggatcacca ccggctgcgg gtggccggcg gcttcgatct cgtcatacac
     1501 ctggttgagg ttttcctcgg tcttgcccag cagcagcaca gtggcgccat gggcggcgta
     1561 ggctttggcg gcggcggcgc cgatgccacg gccggcaccg gtcaccagga tcacgcggcc
     1621 cttgagcagg tcggggcggg cgctgtagtc gaacatgggc gaaatctcgt tgttgcgtga
     1681 atcggatcag cagctgcaca gggcgcggtc gagcacggcg cgcagctcca ggggatggtc
     1741 caccaccacg tcggcgcccc agtggcgcgg gttgtcttcg gggtggatat agccgtaggt
     1801 gacggcggcg gtcttgcagc ccgcggcgcg gccggcctcg atgtcgcggg cgtcgtcgcc
     1861 gatgaacagc acgtcggcgg gagcgatgcc gatcttctcg caggccagca ggagcatgtc
     1921 cggcgccggc ttgctgcggg ccacgtggtc cgggcacacc agcacggcgg agcggtcggc
     1981 cagttccagc tgctgcatga ttggttcggc gaaaatcacc ggcttgttgg tggccacgcc
     2041 ccagatcagc cgcgcgcgct cgatgtcgtc gagcagttcg agcatgccgt cgaacggctt
     2101 gctgagcacc gcgcagtgtt gctggtagcg ctcgaggaac tccaggcgca gggcctcgaa
     2161 gccttcggcg ccgacctcga tgccgaaggt ggcggcgacc atggcgcggg cgccgccaga
     2221 aatcacgtcg cgcaccaact ggtcgtcgat cggttccagg caatgggcgg cgcgcatggc
     2281 ctggcacacg gcgacgaagt ccggcgcggt gtccagcagg gtgccatcca tgtcgaagag
     2341 aactgctcgc agggtcatgc gcttactcct cgcgcagggt ctggatcatg tagttgacgt
     2401 cgacatccgc ctcgagcttg tagtgcttgg tcagcgggtt gtaggtcagg ccgatgatgt
     2461 ccttgacctg caggccggcg gcgcggctcc aggcgcccag ctcggagggg cggatgaact
     2521 tcttgaagtc gtgggtgccg cgcggcagca ggcgcagcag gtactccgca ccgaccacgg
     2581 cgaacaggta ggccttgggg ttgcggttga tggtggagaa gaacacctgg ccgccgggct
     2641 tgaccatctt gtggcaggcg cggatcaccg acgacgggtc gggcacgtgc tcgagcatct
     2701 ccaggcaggt gaccacgtcg aactggccgg gcatctcctc ggccagggcc tcggcggtga
     2761 tctgccggta c
//
LOCUS       DATIHC010000286         3811 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31129, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000286 DATIHC010000000
VERSION     DATIHC010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3811
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31129"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..240)
                     /locus_tag="VLF16_04580"
     CDS             complement(<1..240)
                     /locus_tag="VLF16_04580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70189.1"
                     /translation="MAKESSVFQASTRRDLARALALTGLFSCVVLVLGDHLYLGIWYY
                     LAVPLAALGLGLLCRCPPWFLTGTTIGALLTLAVYA"
     gene            complement(287..>3811)
                     /gene="metH"
                     /locus_tag="VLF16_04585"
     CDS             complement(287..>3811)
                     /gene="metH"
                     /locus_tag="VLF16_04585"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009685909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0008705 - methionine synthase activity
                     [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HSX70190.1"
                     /translation="QPQIIAEIEKAYLDAGADILETNTFNATRVSQADYGMEELTYEL
                     NVSGARVARQVADAKTLETPDRPRFVAGVLGPTSRTCSISPDVNDPGFRNVTFDELVE
                     NYTEATRGLIEGGADLILIETIFDTLNAKAAIFAVQQVFDEDDVELPIMISGTITDAS
                     GRTLSGQTTEAFWNSVRHAKPISVGLNCALGAKELRPYLAELSAKADTQVSAHPNAGL
                     PNAFGEYDETPAQMAEVVEEFAASGLLNIIGGCCGTTPGHIRAIAEAVAKYPPRVIPD
                     IPKACRLSGLEPFTIDRSSLFVNVGERTNITGSAKFARLIREENYTEALEVALQQVEA
                     GAQVIDINMDEGMLDSQAAMVRFLNLIASEPDISRVPIMIDSSKWDVIEAGLKCIQGK
                     GIVNSISMKEGVEQFKHHAKLCKRYGAAVVVMAFDETGQADTAARKKEICQRSYDILV
                     NEVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEACAFIRDELPYALSSGGVSNVSF
                     SFRGNNPVREAIHSVFLYYAIQNGLSMGIVNAGQLEIYDEIPKELRDRVEDVVLNRTP
                     GGTDALLAIAENYRGGGAVKEAEDEEWRSLPVDKRLEHALVKGITAFIVEDTEECRQQ
                     CARPIEVIEGPLMSGMNVVGDLFGSGKMFLPQVVKSARVMKQAVAHLIPFIEAEKGDK
                     PEAKGKILMATVKGDVHDIGKNIVGVVLGCNGYDIVDLGVMVPAEKILQTAIAEKCDI
                     IGLSGLITPSLDEMVHVAKEMQRQGFTLPLMIGGATTSKAHTAVKIDPQYSNDAVIYV
                     TDASRAVGVATQLLSKELKPDFVKKTRDEYVVVRERTAARATRTERLSYADAIANKPD
                     FDWSTYVAPKPSFTGVQVLDDIDLRELAEYIDWTPFFISWDLAGKYPRILTDEIVGEA
                     ATSLFNDAQAMLTKLIDEKLIKARAVFGFWPANQVRHDDIEVYGDNGKPLATLHHLRQ
                     QTIKPDSKPNLSLADFVAPRESGKTDYMGGFITTAGIGAEEVAKAYEAKGDDYSSIMV
                     KALADRLAEACAEWLHERVRKQYWGYAKDETLDNEALIREQYVGIRPAPGYPACPDHT
                     EKAALFKLLDPEADYHQAGKSGVFLTEHYAMFPAAAVSGWYFAHPEAQYFAVGKVDKD
                     QVECYTQRKGQELAVTERWLAPNLGYDS"
BASE COUNT          570 a         1168 c         1346 g          727 t
ORIGIN      
        1 cgcgtaaacc gccagcgtga gcaaggcgcc gatggtcgtg ccggtgagaa accacggcgg
       61 acaccggcac agcaagccca ggccgagtgc cgccaggggc acggcgaggt agtaccagat
      121 gcccaggtag aggtgatcgc ccagtaccag aacgacgcac gagaacaggc cggtgagggc
      181 gagcgcacgt gccaggtcac gccgggtcga tgcttgaaaa acgctgcttt ccttggccat
      241 tgcttctcca atcgtcgtcc atgacgggtg tgtcaggggc aagcggtcag ctgtcatacc
      301 ccagattcgg cgccagccag cgttcggtca cggccagctc ctggcccttg cgctgggtgt
      361 agcactccac ctgatcctta tcgaccttgc cgacggcgaa gtactgcgcc tcggggtggg
      421 cgaagtacca gccgctgacg gctgcggccg ggaacatggc gtagtgctcg gtgaggaaga
      481 ccccgctttt gccggcctgg tggtaatcgg cctcggggtc gagcagcttg aacaatgcgg
      541 ccttctcggt gtggtccggg caggccgggt agccgggggc cgggcggatg ccgacgtact
      601 gctcgcggat cagcgcctcg ttgtccagcg tctcgtcctt ggcgtagccc cagtactgct
      661 tgcgcacgcg ctcgtgcagc cactcggcgc aggcctcggc caggcggtcg gcgagggcct
      721 tgaccatgat cgagctgtag tcgtcgccct tggcctcgta ggccttggcc acttcctcgg
      781 cgccgatgcc ggcggtggtg atgaagccgc ccatgtagtc ggtcttgccg ctttccctgg
      841 gcgcgacgaa gtcggccagc gacaggttcg gcttgctgtc cggcttgatg gtctgctggc
      901 gcaggtggtg cagggtggcc agcggcttgc cgttgtcgcc gtacacctcg atgtcgtcgt
      961 ggcgcacctg gttggccggc cagaagccga acacggcgcg ggccttgatc agcttctcgt
     1021 cgatcagttt ggtcagcatc gcctgtgcgt cgttgaacag gctggtggcg gcctcgccga
     1081 cgatctcgtc ggtgaggatg cgcgggtact tgccggccag gtcccaggag atgaagaagg
     1141 gcgtccagtc gatgtattcg gccagctcgc gcaggtcgat gtcgtccagc acctgcacgc
     1201 cggtgaagct cggcttgggc gcgacgtagg tggaccagtc gaagtccggc ttgttggcga
     1261 tggcgtcggc gtagctcagg cgctcggtac gcgtggcgcg ggcggcggtg cgctcgcgca
     1321 ccaccacgta ctcgtcgcgg gtcttcttga cgaagtcggg cttgagctcc ttggacagca
     1381 gctgggtggc cacgcccacg gcgcgcgagg cgtcggtgac gtagatgacc gcgtcgttgc
     1441 tgtactgcgg gtcgatcttc accgcggtgt gggccttgga ggtggtggcg ccgccgatca
     1501 tcagcggcag ggtgaagccc tggcgctgca tctccttggc cacgtgcacc atctcgtcca
     1561 gcgacggggt gatcagaccg gacaggccga tgatgtcgca cttctcggca atcgccgtct
     1621 gcaggatctt ctccgccggc accatcacgc cgaggtcgac gatgtcgtag ccgttgcagc
     1681 cgagcaccac gccgacgatg ttcttgccga tgtcgtgcac gtcgcccttc acggtggcca
     1741 tgaggatctt gcccttggcc tccggcttgt cgcctttctc cgcctcgatg aaggggatca
     1801 ggtgggccac ggcctgcttc atcacgcggg cggatttcac cacctggggc aggaacatct
     1861 tgcccgagcc gaacaggtcg ccgaccacgt tcatgccgct catcagcggg ccctcgatca
     1921 cctcgatggg gcgcgcgcac tgctggcggc attcctcggt gtcttcgacg atgaaggcgg
     1981 tgatgccctt gaccagcgcg tgttccaggc gcttgtcgac cggcagcgag cgccattcct
     2041 catcttcggc ttccttcacc gcgccgccgc cgcggtagtt ctcggcgatg gccagcaggg
     2101 cgtcggtgcc gcccggcgtg cggttgagca ccacgtcctc gaccctgtcg cgcagctcct
     2161 tggggatctc gtcgtagatc tccagctggc cggcgttgac gatgcccatg gagaggccgt
     2221 tctgaatcgc ataatagagg aacaccgagt ggatcgcttc gcgcaccggg ttgttgccgc
     2281 ggaacgagaa ggacacgttg gacacaccgc cggagctgag cgcatagggc agctcgtcac
     2341 ggatgaaggc gcaggcctcg atgaagtcca ccgcgtagtt gttgtgttcc tcgatgccgg
     2401 tggcgacggc gaagatgttc gggtcgaaga tgatgtcttc cggcgggaag ccgacttcgt
     2461 tgaccaggat gtcgtagctg cgctggcaga tttccttctt gcgtgcggca gtgtcggcct
     2521 ggccggtttc gtcgaaggcc atgaccacca cggcggcgcc atagcgcttg cacagcttgg
     2581 cgtggtgctt gaactgctcg acgccttcct tcatggagat cgagttgacg atgcccttgc
     2641 cctggatgca cttgaggccg gcctcgatca cgtcccactt ggaggagtcg atcatgatcg
     2701 gcacgcggga gatgtccggc tcggaggcga tcaggttgag gaagcgcacc atggccgcct
     2761 gggagtcgag catcccttcg tccatgttga tgtcgatcac ctgggcgccg gcttcgacct
     2821 gctgcagggc gacctccagg gcctcggtgt agttctcctc gcggatcagc cgggcgaact
     2881 tggccgagcc ggtgatattg gtgcgctcgc cgacgttcac gaacagcgaa ctgcggtcga
     2941 tggtgaacgg ctccaggccg gacaggcggc aggccttggg gatgtccggg atcacgcggg
     3001 gcgggtactt ggccacggcc tcggcgatgg cgcggatgtg ccccggggtg gtgccgcagc
     3061 agccgccgat gatgttgagc agaccgctgg cggcgaactc ctcgaccacc tcggccatct
     3121 gcgccggggt ctcgtcgtac tcgccgaagg cgttgggcag gccggcgttg gggtgggcgg
     3181 acacctgggt gtcggccttg gccgaaagct ccgccaggta cgggcgcagc tccttggcac
     3241 cgagggcaca gttcagaccc acggagatcg gcttggcgtg gcgcaccgag ttccagaagg
     3301 cctcggtggt ctggccggac agggtgcggc cggaggcgtc ggtgatggtg ccggagatca
     3361 tgatcggcag ctcgacatcg tcctcgtcga acacctgctg cacggcgaag atcgccgcct
     3421 tggcgttgag ggtgtcgaag atggtctcga tcaggatcag gtcggcgccg ccctcgatca
     3481 ggccgcgggt ggcctcggtg tagttctcca ccagttcgtc gaaggtgacg ttgcggaagc
     3541 ccgggtcgtt gacgtccggg gagatcgagc aggtacggct ggtcgggccg aggacgccgg
     3601 cgacgaagcg tgggcgatcc ggggtttcca gggtcttggc atcggccacc tggcgggcga
     3661 cacgggcgcc ggacacgttc agctcgtagg tcagctcttc catgccgtag tcggcctggg
     3721 acacgcgggt ggcgttgaag gtgttggttt ccaggatgtc ggcaccggca tccaggtagg
     3781 ccttctcgat ctcggcgatg atctgcggct g
//
LOCUS       DATIHC010000287         1812 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33491, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000287 DATIHC010000000
VERSION     DATIHC010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1812
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33491"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1185
                     /gene="aspS"
                     /locus_tag="VLF16_04590"
     CDS             <1..1185
                     /gene="aspS"
                     /locus_tag="VLF16_04590"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HSX70191.1"
                     /translation="QILKQLTMVAGFDRYYQIAKCFRDEDLRADRQPEFTQIDIETSF
                     LDEDDIMGITETMIRNLFKEVLDLEFGELPHMTLAEAMRRFGSDKPDLRIPLELVDVA
                     DQLKDVEFKVFSGPANDAKGRVAALRVPGAASMPRSQIDDYTKFVGNYGAKGLAYIKV
                     NERAKGVEGLQSPIVKFIPEDNLKVILDRVGAVDGDIVFFGADRAKVVCDALGALRIK
                     VGHDLNLLTCEWAPLWVVDFPMFEENDDGSLTAMHHPFTSPKCSPEELKANPAAALSR
                     AYDMVLNGTELGGGSIRIHDKKMQQAVFEVLGISEAEQEEKFGFLLDALKFGAPPHGG
                     LAFGLDRLVMLMTGASSIREVIAFPKTQSAADVMTQAPGVVDAKALRELHIRLREQPK
                     AE"
     gene            1294..>1812
                     /locus_tag="VLF16_04595"
     CDS             1294..>1812
                     /locus_tag="VLF16_04595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004423468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HSX70192.1"
                     /translation="MAGHSKWANIKHRKGRQDAKRGKIFTKLIRELTVAAKHGGGVPA
                     DNPRLRLAVDKALTANMSRDVIDRAIARGAGNTEADNMIELSYEGYAPSGVAIIIEAM
                     TDNRNRTAADVRHAFTKCGGNLGTDGSVAYMFERKGQISFAPGVSEDALMEAALEAGA
                     DDVEMGEDGSAMV"
BASE COUNT          360 a          590 c          566 g          296 t
ORIGIN      
        1 cagatcctca agcagctgac gatggtcgcc ggcttcgacc gctactacca gatcgccaag
       61 tgcttccgcg acgaagacct gcgtgccgac cgtcagccgg aattcaccca gatcgacatc
      121 gagaccagct tcctcgatga agacgacatc atgggcatca ccgagaccat gatccgcaac
      181 ctgttcaagg aagtgctgga tctggagttc ggcgagctgc cgcacatgac tctggccgaa
      241 gccatgcgtc gcttcggttc cgacaagccg gatctgcgta ttccgctgga gctggtggac
      301 gtcgccgatc agctcaagga cgtcgaattc aaggtgttct ccggcccggc caacgatgcc
      361 aagggccgcg tcgccgccct gcgcgtgccg ggcgccgcct ccatgccgcg cagccagatc
      421 gacgactaca ccaagttcgt cggcaactac ggcgccaagg gcctggccta catcaaggtc
      481 aacgagcgcg ccaagggcgt cgaaggcctg cagtcgccga tcgtcaaatt catcccggaa
      541 gacaacctca aggtcatcct cgatcgcgtc ggcgccgtcg atggcgacat cgtgttcttc
      601 ggcgccgacc gcgccaaggt ggtctgcgat gcgctgggcg cgctgcgcat caaggtcggt
      661 cacgatctga acctgctcac ctgcgagtgg gcgccgctgt gggtcgtcga tttcccgatg
      721 ttcgaagaga acgacgatgg cagcctgacc gccatgcacc acccgttcac ttcgcccaag
      781 tgcagcccgg aagagctcaa ggccaacccg gccgcggcgc tgtctcgtgc ctatgacatg
      841 gtgctcaacg gcaccgaact gggtggcggc tccattcgta tccacgacaa gaagatgcag
      901 caggccgtgt tcgaggttct cggcatcagc gaggcggagc aggaagagaa gttcggcttc
      961 ctcctcgacg cactgaagtt cggtgcgccg ccccacggtg gcctggcctt cggcctggac
     1021 cgcctggtga tgctgatgac cggcgccagc tcgattcgcg aagtgatcgc cttcccgaag
     1081 acccagagcg ccgccgacgt gatgacccag gcgcccggcg tggtcgacgc caaggccctg
     1141 cgcgagctgc atatccgcct gcgcgaacag cccaaggcgg agtaagtcga aacaagaagc
     1201 ctggatttcc aggcttcttc gttatggggt gggcggagag actcgaactc tcacacctct
     1261 gcaatctcaa gtgctaaaga aacggagtga gttatggccg gtcattccaa atgggccaac
     1321 atcaagcacc gcaagggtcg ccaggacgcc aagcgcggca agatcttcac caagctgatt
     1381 cgtgagctga ccgtggccgc caagcatggc ggcggcgtgc cggcggacaa tccccgtctg
     1441 cgcctggcgg tcgataaggc cctcacggcc aacatgtcgc gtgacgtgat cgaccgcgcc
     1501 atcgcccgcg gcgccggcaa caccgaagcc gacaacatga tcgagctgag ctacgagggt
     1561 tatgcgccga gcggcgtggc gatcatcatt gaagccatga ccgacaaccg caaccgcacc
     1621 gccgccgacg tgcgccacgc cttcaccaag tgcggcggca acctcggcac cgacggctcg
     1681 gtggcctaca tgttcgagcg caaggggcag atcagcttcg cgcctggcgt gagcgaagat
     1741 gccctgatgg aggccgccct ggaggccggc gccgatgatg tggagatggg cgaggatggc
     1801 tcggccatgg tc
//
LOCUS       DATIHC010000288         1812 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_14505, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000288 DATIHC010000000
VERSION     DATIHC010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1812
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14505"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            39..845
                     /gene="tcdA"
                     /locus_tag="VLF16_04600"
     CDS             39..845
                     /gene="tcdA"
                     /locus_tag="VLF16_04600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HSX70193.1"
                     /translation="MTDEQRFGGIARLYGREGLERLAAAHVAVVGIGGVGSWAAEALA
                     RSGVGEISLFDLDDVCITNTNRQVHAIDGAVGKAKVDEMAARIRAINPACTVHAVADF
                     VTRETMAEYITKQLDAVIDCIDSVAAKAALIAWCKRRKIQIVTTGGAGGQVDPTQIQV
                     ADLNKTFNDPLAAKVRSTLRRDYNFSRTPGRSYSVPCVFSTEQLRYPKPDGTVCQAKG
                     FVGEGVKLDCAGGFGAVMMVTASFGMAAAARIVDKLVAGARRPAERPRAD"
     gene            943..1728
                     /locus_tag="VLF16_04605"
     CDS             943..1728
                     /locus_tag="VLF16_04605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HSX70194.1"
                     /translation="MLHRRRFVIRCVLASLLALAPVLRADPLVRIGTSDWAPYVEQGR
                     GDGGALVRLVTAVFAAAGYRAEFFFYPWDRNVLMLQQGTLDAIMPYSCSPMRLDYGIC
                     SDPLVRGEVVLFHRRDRVFDWTRIEDLRPYRIGTTHGYSYGPQFDRALQDGLLEIEQH
                     SKEDTALRLLELGRIDLHPQDRAVGYAMLHRLFPGERRITHHPRYLNTEPLRLLFRRD
                     DPAARQLLERFNTALADFARRGELKRLQEALYSGNADHWQPKR"
BASE COUNT          279 a          635 c          625 g          273 t
ORIGIN      
        1 agcccgtata atgccggccg gttcatgagg gtggcgagat gacagacgaa cagcgcttcg
       61 gcggcatagc ccggctctac gggcgcgagg ggctggagcg cctggcggcg gcgcacgtgg
      121 cggtggtcgg catcggtggc gtcggctcct gggcggccga ggccctggcc cgctccgggg
      181 tcggggagat ctcgctgttc gacctggacg acgtgtgcat caccaacacc aaccgccagg
      241 tgcacgccat cgacggcgcc gtgggcaagg ccaaggtcga cgagatggcc gcgcgcatcc
      301 gcgccatcaa cccggcctgc accgtgcacg cggtggccga cttcgtcacc cgcgagacca
      361 tggccgagta catcaccaag cagctcgatg cggtgatcga ctgcatcgac agcgtggcgg
      421 ccaaggccgc gctgatcgcc tggtgcaagc ggcgcaagat ccagatcgtc accaccggcg
      481 gcgcgggcgg gcaggtcgac cccacgcaga ttcaggtcgc cgacctcaac aagaccttca
      541 acgacccgct cgccgccaag gtgcgcagca ccctgcgccg cgactacaac ttctcgcgta
      601 cgccggggcg cagctacagc gtgccctgcg tgttctccac cgagcagctg cgctatccca
      661 agccggacgg caccgtgtgc caggccaagg gcttcgtcgg cgagggcgtc aagctggact
      721 gcgccggcgg tttcggcgcg gtgatgatgg tcaccgccag cttcggcatg gccgcggcgg
      781 cgcgcatcgt cgacaagctg gtggccggtg cacgacgccc ggcggagcgg ccgcgggccg
      841 attgaggaac ctcccgccgg ggctcggcta agctcaaggc gtgggcaggc tgcctgctcg
      901 atgggaaaac cttccgcgtc cgctcagaga ggtgttcgcc cggtgctgca tcgccgtcgc
      961 ttcgttatcc gctgtgtgct ggcgagcctg ctggccctcg cgcccgtgct ccgggccgat
     1021 ccgctggtgc gcatcggtac cagcgactgg gcgccctacg tcgagcaggg acgcggcgat
     1081 ggcggcgccc tggttcggct ggtgacggcg gtcttcgccg ccgccggcta ccgcgccgag
     1141 ttcttcttct atccctggga ccgcaacgtg ctgatgctgc agcagggcac gctggacgcc
     1201 atcatgccct acagctgcag ccccatgcgc ctggactacg gcatttgcag cgacccgctg
     1261 gtgcgcggcg aggtggtgtt gttccatcgt cgcgaccgcg tcttcgactg gacccgcatc
     1321 gaagacttga ggccctaccg catcggcacc acgcacggtt attcctatgg gccgcagttc
     1381 gaccgcgcct tgcaggacgg cctgctggag atcgagcagc acagcaagga agacaccgcg
     1441 ctgcgcctgc tcgagttggg gcgcatcgat ctgcacccgc aggaccgggc cgtgggctac
     1501 gccatgctgc accggctgtt ccccggcgag cgccgcatca cccaccatcc gcgctacctg
     1561 aacaccgagc cgctgcgcct gctcttccgc cgcgacgacc cggcggcgag gcagctgctc
     1621 gagcgcttca acaccgcgct ggcggatttc gccaggcgcg gcgagctcaa aaggctgcag
     1681 gaggcgctgt actccggcaa cgccgaccac tggcagccga agcgctagtt cggcagaagc
     1741 ccgcctatcg accggccagc gcggccatgc gcttgagcac ggcgttgagg ccgttggcgc
     1801 gcgacgggga ga
//
LOCUS       DATIHC010000289         1973 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12401, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000289 DATIHC010000000
VERSION     DATIHC010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1973)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1973)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1973
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12401"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..550)
                     /locus_tag="VLF16_04610"
     CDS             complement(<1..550)
                     /locus_tag="VLF16_04610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70195.1"
                     /translation="MRIALVLLFKLLLLALIAPFIVLSSFMFVSPFLKLGFSWPPFLM
                     ASAAWIACSALIVCRRRDWGPVAMGLATVATAGVIYLHGPAALGNDAQWVLAAFAVPA
                     AISFVYRNRLTEPMLVFPALIVLSAILTDILFPAALLLWAHFAADYPLGLKDVVTTLE
                     SLSSLLAVAPTALLYWLGKHGYV"
     gene            complement(652..1092)
                     /locus_tag="VLF16_04615"
     CDS             complement(652..1092)
                     /locus_tag="VLF16_04615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2846 domain-containing protein"
                     /protein_id="HSX70196.1"
                     /translation="MSKKMMCAAALGVALLSGCASVPMESSEKDQALKAFPTPPQDQA
                     GLYIFRDSSLGPVLKKTVKVDGEVIGETAINTYFYRTVTPGEHVLATESEFGDNTLTL
                     HAEAGKNHFVRQYIKFGVFVGGANLEQVSEAEGRKGVSETELAQ"
     gene            complement(1220..1912)
                     /locus_tag="VLF16_04620"
     CDS             complement(1220..1912)
                     /locus_tag="VLF16_04620"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013790879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSX70197.1"
                     /translation="MFTLTHLTTPPPESLKSQVLQMVVDHFSDISPAPLTPSNPLYQL
                     YQYVIGFEVHLYLQAMDGEEGGAARLILALDDQDPSRVLGFALYLPSPDDAEACTLVY
                     LAVQADRRRHGIARAMLQQMLTLHPHAALACVASRVPTFEALGFRVLGARGPQVLMNT
                     RDHASDGLVAVQDLAPIFQSKEVRQIHSYLVKQHGEKALRDAEKQRDRLLDQLARQAE
                     AVVEERRSARLH"
BASE COUNT          355 a          598 c          702 g          318 t
ORIGIN      
        1 gcacgtagcc gtgcttgccg agccaataga gcagggcggt gggcgccacg gcgagcaggc
       61 tgctcaggct ctcgagggtg gtcacgacat ccttcaggcc cagcggatag tcggcggcga
      121 agtgggccca taacagcagc gcggcgggga agagaatgtc agtcaggatg gcgctcagga
      181 cgatcagcgc cgggaacacc agcatcggct ctgtgagccg gttgcggtag acgaagctga
      241 tcgccgccgg caccgcgaag gcggcgagta cccattgggc gtcgttgccc agtgctgccg
      301 ggccatgcag atagatgacg ccagcggtgg cgacggtcgc gaggcccatg gcgacggggc
      361 cccagtcgcg ccgacgacag acgatcaggg cactgcaggc gatccacgcc gcgctcgcca
      421 tgaggaacgg cggccagctg aatcccagct tgagaaaggg ggaaacgaac atgaagctcg
      481 acagcacgat gaagggcgcg atgagcgcca gcagcaggag tttgaacagc aggaccaggg
      541 cgatcctcat gagctgacgg ggcgggggca tcgggcatcc ttgtcgatgg ggcctggagt
      601 tcggacggcc gaaactccag gccatggcgt agcgcgaaaa gccgcttgcg cttactgcgc
      661 cagctcggtt tccgacacgc ccttgcggcc ttcggcttcg gagacctgct ccaggttggc
      721 gccaccgacg aacacgccga acttgatgta ctggcgcacg aagtggttct tgccggcttc
      781 ggcgtgcagg gtgagggtgt tgtcgccgaa ttcggactcg gtcgccagca cgtgctcgcc
      841 cggggtgaca gtacggtaga agtaggtgtt gatcgccgtt tcgccgatca cttcgccgtc
      901 gaccttgacc gtcttcttca gcaccgggcc gagcgacgag tcgcggaaga tgtagaggcc
      961 ggcctggtcc tgcggcggcg tggggaaggc cttgagcgct tgatccttct cggaggattc
     1021 catcggtacg gatgcacagc ccgacagcag cgccacgccg agcgccgctg cacacatcat
     1081 tttcttggac atggatttac tcgttcctga gtgttggtaa tgcccggcac gctatcaatg
     1141 tgccagcagg cgctacctta acggcgcaca ctcgcaatgc aagcacaaag gctgaccgca
     1201 gggtcggcgg accgaccgat caatgcaggc gcgcgctgcg acgttcctcg accaccgcct
     1261 cggcctggcg agcgagctga tcgagcaggc ggtcgcgctg tttctcggcg tcgcgcaggg
     1321 ccttctcgcc gtgctgcttg accagatagc tgtggatctg ccggacttcc ttggactgga
     1381 agatcggcgc caggtcttgc accgcgacca ggccatccga ggcgtggtcg cgggtgttca
     1441 tcagcacctg cgggccacgc gcgcccagca cccggaagcc cagggcctcg aaggtcggca
     1501 cccggctggc cacgcaggcc agcgcggcgt gcgggtggag cgtcagcatc tgctgcagca
     1561 tggcgcgggc gatgccatgg cgacgacggt cggcctgtac cgccagatag accagagtgc
     1621 aggcctcggc atcgtccggg ctcggcaggt acagggcaaa acccagcacg cgggacgggt
     1681 cctgatcatc gagggcaagg atcaaccgcg cagcgccgcc ttcctcgccg tccatggcct
     1741 gcaggtacag gtgcacctcg aagccgatga cgtactgata cagctggtac agcggattgc
     1801 tgggcgtgag cggcgcgggg ctgatgtcgc tgaaatggtc gaccaccatc tgcagcacct
     1861 ggctcttcag cgactcgggt ggcggggtgg tgaggtgggt gagggtgaac atcgggaggg
     1921 ggctccggga cgggcaggcc cgcttgggga atcggcgggc ggcattgtac cgt
//
LOCUS       DATIHC010000290         2378 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31164, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000290 DATIHC010000000
VERSION     DATIHC010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2378)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2378)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2378
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31164"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..891)
                     /locus_tag="VLF16_04625"
     CDS             complement(<1..891)
                     /locus_tag="VLF16_04625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015479526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HSX70198.1"
                     /translation="MARRLPPLYALRAFEAAARHASFTRAAEELAITQSAVSRHIRTL
                     EEHFACRLFERAGRHLRLSESARLLLPGVRDGFDALERACTALSADDATLRLKAPSTL
                     TMRWLLARLSRFRLHNADIEVQLTSAWMDVDRVDFHQEPFDCAVLLNAGGSFPAEWES
                     VELFAEWLIPVCAPEAAASGTWDLARLQAAELLHPTPDRRDWRRWLQAMGLEEQVPLR
                     GGQVFDTLELGIVAAERGYGVSIGDLVMIAEDAEQGRLGLPLPSAVASGDSYHLVWPK
                     GRRGEERLRRLRDFLLAEVEQ"
     gene            1030..>2378
                     /locus_tag="VLF16_04630"
     CDS             1030..>2378
                     /locus_tag="VLF16_04630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003457663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NorM family multidrug efflux MATE transporter"
                     /protein_id="HSX70199.1"
                     /translation="MPQPIRDELVALFRLAGPLITAQLAHVLMVFTDTIMMGMLGPEQ
                     LAGGALGATCYYMLSLFCVGTVAAVGSLVAIRHGAGDAQGATRLLQNGLWLALLLGVA
                     GALCLRALGPLLPHLGQQPDAAARAMEFLGPLALALPGYLIFMALRGFTSAIGHPGPV
                     MTIGIVGAVANFVINYALIEGWFGLPSLGLGGIGMTTALVSSGMALALALHILSAPAY
                     RDYLPLRGLLRPRRREMGALLRLGLPIGGTYAAEQGMFTFAALCMGALGSVQLAAHQI
                     AIQAVTLAFILPQGLSYAVTFRVGQHYGAGRPADVRRAGYLGIAGGAGCMLVFALLFW
                     LMPEPVVGLFVDRNDPAFAEVVTLAVSLLAVAAVFELFDGTQSIAMGTIRGLGDGKTT
                     LLVGLGCYWLIGIPLAWTLAFPFGWGAHGVWWGLAGGLACAAFGLILGFEWKTARLLR
                     "
BASE COUNT          301 a          873 c          815 g          389 t
ORIGIN      
        1 ctgctccacc tcggccaaca gaaagtcgcg cagccggcgc agccgctcct cgccacgccg
       61 ccccttgggc cagaccaggt gatagctgtc gccgctggcc accgcgctgg gcaacggcag
      121 gcccaggcgg ccctgctcgg cgtcctcggc gatcatcacc aggtcgccga tggacacccc
      181 gtagccgcgc tcggcggcga cgatgcccag ctccagggtg tcgaacacct ggccgccgcg
      241 cagcggcacc tgctcctcca gccccatggc ctgcagccag cgccgccagt cgcgacggtc
      301 cggcgtgggg tgcagcaact cggcggcctg cagccgcgcc agatcccaag ttccgctggc
      361 ggccgcctcc ggcgcgcaga ccggaatcag ccattcggcg aacagctcga cgctctccca
      421 ttcggcggga aagctgccgc cggcgttgag cagcacggcg caatcgaagg gctcttggtg
      481 gaagtcgacc cggtcgacgt ccatccaggc gctggtcagc tgcacctcga tgtcggcgtt
      541 gtgcaggcga aagcgcgaga gccgtgccag cagccagcgc atggtcaggg tcgagggcgc
      601 cttcaggcgc agggtggcgt catcggcgct gagcgcggtg caggcccgct ccagcgcgtc
      661 gaatccgtcg cgcacgccgg gcagcaacag gcgcgcgctc tcgctcaggc gcaggtgacg
      721 gccggcccgc tcgaacaggc gacaggcgaa atgctcctcc agggtgcgga tgtgccggct
      781 caccgcgctc tgggtgatgg ccagctcctc ggcggcgcgg gtgaacgagg catgccgggc
      841 tgcggcctcg aaggcgcgca gggcatagag cggtggcagg cgtcgggcca tgagcgatat
      901 ccatgagtat tagtcatgcc aagcatcgca tttttccttt tgtccgtggc ccgctcggcc
      961 caccagaata cgcgccaatc cacttgcgcc cggcatccgt ccgaggccca tcgctgagcc
     1021 tcactcatca tgccgcagcc cattcgcgac gaactggtcg ccctcttccg cctcgccggt
     1081 ccgctgatca ccgcgcagct ggcccacgtg ctgatggtgt tcaccgacac catcatgatg
     1141 ggcatgctcg gccccgagca gctggccggc ggcgctctgg gcgccacctg ctactacatg
     1201 ctgtcgctgt tctgcgtcgg cacggtggcc gcggtgggca gcctggtcgc catccgccat
     1261 ggcgccggcg atgcccaggg cgccacgcgt ctgctgcaga acggcctgtg gctggccctg
     1321 ctgctgggcg ttgcgggcgc gctctgcctg cgcgccctcg gcccgctgct gccgcatctg
     1381 ggccagcaac ccgatgccgc ggcgcgcgcc atggagttcc tcggtccgct ggccttggcg
     1441 ttgcccggct acctcatctt catggccctg cgcggcttca ccagcgccat tggccatccc
     1501 ggcccggtga tgaccatcgg catcgtcggc gccgtcgcca acttcgtcat caactatgcg
     1561 ctgatcgagg gctggttcgg tctgcccagc ctgggcctgg gcggcatcgg catgaccacc
     1621 gccctggtca gcagcggcat ggccctggca ctcgcgctgc acatcctgag cgccccggcc
     1681 taccgcgatt acctgccact gcgcggcctg ctacgtccgc ggcggcgcga gatgggcgcg
     1741 ctgctgcgcc tgggcctgcc catcggcggc acctacgccg ccgagcaggg catgttcacc
     1801 ttcgccgccc tgtgcatggg cgccctcggc agcgtgcagc tggcggcgca ccagatcgcc
     1861 atccaggcgg tgacgctggc gttcatcctg ccccagggcc tgtcctacgc cgtgaccttc
     1921 cgcgtcggcc agcactacgg cgccggccgc ccggccgacg tgcgccgcgc cggttacctg
     1981 ggtatcgccg gcggcgccgg ctgcatgctg gtgttcgccc tgctgttctg gctgatgccg
     2041 gagccggtgg tggggctgtt cgtcgaccgc aacgacccgg ccttcgccga ggtggtcacc
     2101 ctggccgtga gcctgctggc ggtggccgcc gtgttcgagc tgttcgacgg cacccagagc
     2161 atcgccatgg gcaccattcg cggcctgggc gacggcaaga ccaccctgct ggttgggcta
     2221 ggctgctact ggctgatcgg catcccgctg gcctggaccc tggccttccc gttcggctgg
     2281 ggtgcccatg gggtgtggtg ggggctggcg ggcggactgg cctgcgcggc gttcggcctg
     2341 atcctgggct tcgagtggaa gaccgcgcgc ctgctgcg
//
LOCUS       DATIHC010000291        12536 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_26143, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000291 DATIHC010000000
VERSION     DATIHC010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 12536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12536
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26143"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..433
                     /locus_tag="VLF16_04635"
     CDS             <1..433
                     /locus_tag="VLF16_04635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HSX70200.1"
                     /translation="RMVGKVGEINGAIRGTVTAAEEMSGSEESNLRYLDQVTGELMQG
                     LSGSLDELTETTRQLQQDMRVTQADIQEIVVGLQFQDRADQMLDHLQIDLDRLRQATD
                     QPHPDLQPERWLADLRRQFTTAEERQGRRGASARQDDITFF"
     gene            445..810
                     /locus_tag="VLF16_04640"
     CDS             445..810
                     /locus_tag="VLF16_04640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX70201.1"
                     /translation="MSKTILIVDDSLSMRQLVKMTLTGAGHQVIEAVDGRDALNKLTG
                     QKINLIISDVNMPNLDGIGLVKALKARNEYRFTPIVMLTTENEQSKKAEGQAAGAKAW
                     IVKPFQPQQLLSAVEKLAS"
     gene            812..1126
                     /locus_tag="VLF16_04645"
     CDS             812..1126
                     /locus_tag="VLF16_04645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019361075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HSX70202.1"
                     /translation="MIEFQQPAPLRLDLTGSLTIYEVAEAREALLAAFAGARDGDWQL
                     DLGAVDELDSAGAQLLLAAQRHVREAGGALQLNRAGDAVRELLALLRLNELLPGGDAH
                     VQ"
     gene            1116..3323
                     /locus_tag="VLF16_04650"
     CDS             1116..3323
                     /locus_tag="VLF16_04650"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheA"
                     /protein_id="HSX70203.1"
                     /translation="MFNDEQWSQLLRGFIEEGRDLAKQAEEYLLVLDQEPDDEQAVHG
                     LFRAMHTLKGSAGLFTLTPLVNFTHHLESLLSTVRDGKRRLTAPLISLMLRCLDEIAS
                     MLDLIDPDSGELPVDEAHQAQLLDALAEQTGAPRAIAHEADDAAEDCARRGTLERCAG
                     CDAAGAWHISLRFHPDLLRNGFDPASFVRYLGRLGEILHLETLAEQMPDLVEMDPESC
                     YLGLEIALCSSASKAEIEDVFEFIRDFCTLRILPPDSALDDYLKLIQDLPETDERIGS
                     ILIASGLLTEHELAEGLALQAEVGDGLKSPLGSVLVEAGMVPPKAVNAALAKQQSARE
                     RPNRESSQIRVAANKLDELINLVGELVISAAGAQLQAQLQGSADCIESSQTVNQHVEA
                     IREAALKLRMIEIGDTFNRFHRVVRDVSQQLGKQIRLDIQGADTELDRSVIDKLADPL
                     THLVRNAIDHGIESAEQRLAAGKPAEGRLSLNAFHDSGMILIEVSDDGRGLNTARIRE
                     KAIERGLIDPQATLSEADTHMLIFAAGFSTADAVSDLSGRGVGMDVVRSAIDALRGSI
                     EIESRPGLGCTFRIRLPLTLAIIDGFLVSLGDEHFVIPLELVTECLELDARLDSRYGY
                     LNLRGKPLPCIDLAAHFELPSSAQGRRNILVVSLGRQQAGLIVDRLHGELQTVIKPLG
                     LLFQHLQGISGSTILGSGQIALILDVASLLRQLQQHIDHEFRSPQPRPDLMGS"
     gene            3333..4973
                     /locus_tag="VLF16_04655"
     CDS             3333..4973
                     /locus_tag="VLF16_04655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSX70204.1"
                     /translation="MQFIRNMKIGVRLIAGFTLVVLLTALVGALGIINLAKVNELSDR
                     MYQREMRALESMMGANIDLIYLGRHLRSNLLATSQQERESSAAQAQEAIRMMHQNIDA
                     ARDSFESEEAVAKLAALESQLAEYEKTALQMIEANQNEPLAQGGAFSALMPQLRSHGN
                     AADATIGELVAQKKARAKEANDAIGGIYTGSRLQMIVLILIAAVLGFAIGMLVTRSIT
                     RPLGRAVAVADSLAEGDLTVTVEADSRDETGRLLASMQHMTERLRSVMADVRSAADSL
                     SSASEEVSATSQSLSQAATEQAASVEETTASVEQMSASIAQNTDSAQVTDGIAGKAAN
                     DAVEGGRAVREMVQAMKQIADKIGIIDDIAYQTNLLALNAAIEAARAGDHGKGFAVVA
                     AEVRKLAERSQVAAQEIGGVAGSSVQLAEQAGALLDEIVPNIQKTSDLVQEITAASQE
                     QSSGASQINIAMGQMNQITQQNASASEELAATAEEMNSQAGQLLELIGYFRLSAQQAG
                     AAVRRAEPPRSNNLRELRRPERRPQPPVADDGQFVSFN"
     gene            4985..5500
                     /locus_tag="VLF16_04660"
     CDS             4985..5500
                     /locus_tag="VLF16_04660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004880047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HSX70205.1"
                     /translation="MNAINPVPGDALEDSVQHLSFRVRQARYALPIELVREIIEYGQV
                     TAVPMMPSFIHGVINLRGNVVPVLDLAARFGFELTAPGKRTCIVIIELELDGNGQAQR
                     IGLVVDAVDAVLDIDPRDVEQAPPFGTGIRTDFIAGMARDEGGFTIILDVRRVLSLDD
                     IRQLSLMQQAG"
     gene            5500..6309
                     /locus_tag="VLF16_04665"
     CDS             5500..6309
                     /locus_tag="VLF16_04665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CheR family methyltransferase"
                     /protein_id="HSX70206.1"
                     /translation="MAHPHLPKLSDGEFRYLQQMMLEASGIHMADSKRTLVAGRLMSR
                     LRALDQGDFYEYVGFLRQPANEDERRLVIDLLTTNETYFFREPQHFHFLGDWVAAQRG
                     PLHLWSAASSSGEEAYSIAMTLAERARTPHWSIFASDLSRRVLEKARQAIYPLEQAAQ
                     FPDGWLQRHCLRGVNEHAGNFRIGQPLRHRVAFAELNLMRDLPAEVGPFNVIFLRNVL
                     IYFAAPDKRAIVQRLIGRLRPGGLLFIGHAESLHGFDLPLRALRPSVFERQ"
     gene            6317..7399
                     /locus_tag="VLF16_04670"
     CDS             6317..7399
                     /locus_tag="VLF16_04670"
                     /EC_number="3.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020294528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0008984 - protein-glutamate methylesterase
                     activity [Evidence IEA];
                     GO_function: GO:0050568 - protein-glutamine glutaminase
                     activity [Evidence IEA];
                     GO_process: GO:0006482 - protein demethylation [Evidence
                     IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0018277 - protein deamination [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator protein-glutamate
                     methylesterase"
                     /protein_id="HSX70207.1"
                     /translation="MIKVFIVDDSALVRQVLTACLDKHPGIRVIGQAADPLFALEKMR
                     REWPDVLVLDVEMPRMDGITFLRKIMAERPTPAIICSTLTEAGADVTLEALAAGAVGV
                     FTKARLGLKDSLQQISGDLIKQIETAARSQPHAMPRAAAAPAAAAPAREAKPAAPMGF
                     ATTDRVVALGTSTGGTQALEVLLRQLPEDCPGIVIVQHMPEKFTAAFAQRLDSVCRIE
                     VREARHMDRVRSGLALVAPGGRHMQLKRSGAQYLVEVLDGPPVNRHKPSVDVLFRSVA
                     RHAGHNALGIIMTGMGDDGARGLLAMREAGARTVAQDEASCVVFGMPKEALRLGAAQS
                     SEALQNLPALIVQYGRARPQVASGEP"
     gene            7555..8199
                     /locus_tag="VLF16_04675"
     CDS             7555..8199
                     /locus_tag="VLF16_04675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015094065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSX70208.1"
                     /translation="MSRRLLLADDHALIRVGVRAMVDDLPDFEIVGEAEDGQQVVEKA
                     RELKPDIILLDISMKDVSGLEALQPLAEVAPASKVLMLSMHSEAGVVLDALRRGAQGY
                     LLKDAAMVELPLALRAIDRGERYLSSAIAQPVIEQALSNENARADHELTQRQVEILRL
                     ITRGASTRAIADGLGLSVKTVEAHRAQIMKRLDIHDVPGLVLYALREGIISTDD"
     gene            complement(8196..9092)
                     /gene="yegS"
                     /locus_tag="VLF16_04680"
     CDS             complement(8196..9092)
                     /gene="yegS"
                     /locus_tag="VLF16_04680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0001727 - lipid kinase activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid kinase YegS"
                     /protein_id="HSX70209.1"
                     /translation="MSEQRALLILHGKQAQNEEVRAAVMAWREAGWDLGVRLTWEGGD
                     AARLVDEALAAGYPTLIAGGGDGTLREVAEALALAGGTASLALLPLGTANDFARAAGI
                     PLAPAEALSLLGFEARPIDLGEVDGQLFLNMATGGFGSKVTVNTPEELKSLLGGAAYF
                     LTGLRRFSEVRSAFGRFRGPDFSWEGDFLALGIGNGRQAGGGHVMCPQASIDDGLLDI
                     CIVPASQDLVGTLGTLLSGGILGLEAVSISARLPWLEVEAPEGLDINLDGEPLEGHRL
                     RFAARPGALRLHLPNISPLLGG"
     gene            complement(9197..10753)
                     /locus_tag="VLF16_04685"
     CDS             complement(9197..10753)
                     /locus_tag="VLF16_04685"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0019200 - carbohydrate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HSX70210.1"
                     /translation="MTERYLLAIDNGTQSVRALLFDLAGNLVGKGKVELEPYYSEHPG
                     WAEQDPEYYWASLGEACRQLWASVDIDKSRIAGVSLTTQRGTLINVDEAGQPLRPAIL
                     WLDQRRAEVEGRITGPWGWLFKLIREEETIDYFRSQAEANWITQQQPEIWARTHKFLL
                     LSGFLTHRLCGRFADSVGSCVAYLPFDYKRLCWAKPSDWKWQAIPVRPDMLPELVKPG
                     ERIGSISAEASRHTGIPEGLPLIAAASDKACEVIGAGGVEPSTACLSYGTTATINTTR
                     AKYLETIPLIPPYPAAIPDHYNTEVMVFRGFWMVSWFKEQFGHAERQRGLELGVAAET
                     LFDELVEGVPPGSMGLMLQPFWSPGIREPGLEAKGSIIGFGDVHTRAHLYRAILEGLA
                     YALRQGKERIEKRSGTRIQRLRISGGGSQSDAAMQLTADIFNLPAERPHLYEASGLGA
                     AIDCAVGLGLHPDFPTAIAAMTRVGKVFQPNPQAVAVYERLYREVYLRMYRQLKPLYG
                     SIREITGYPA"
     gene            complement(10834..12414)
                     /locus_tag="VLF16_04690"
     CDS             complement(10834..12414)
                     /locus_tag="VLF16_04690"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012018112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase/oxidase"
                     /protein_id="HSX70211.1"
                     /translation="MSWNAPWREAALPELAARDWDLIVVGGGISGAGILREAARRGWS
                     CLMLEQRDFAWGTSSRSSKMVHGGLRYIAKGQLGLTRDSVRERQRLLGEAPGLVDPLP
                     FLFPHYRGKFPGPRVFGGLLGVYDALAGQRLHRYRPAGELRYLAPGLNDTELLGGTLF
                     TDAVTDDARLVMRVLGEARAEGGEALNGMRVIELSRDGARVNGLVAEDSESGRRFAFR
                     ARVVAQATGAWADELRKRSGLEHIRPLRGSHLLLPAWRLPVAQAISFMHPDDGRPAFV
                     FPWEGATVVGTTDLDHDEALSRDARITDAEVEYLLAACASVFPQAGVGRADVLSTWAG
                     VRPVVSAEEGLSRRPSDEKREHALWVEPGCVTLAGGKLTTFRLLALEVLRACAPMLGR
                     EVADVGQAVFREPPQVALPGLCLSQRRRLAGRHGHALPHLAELIGELGYECVGTSNAL
                     WAELALACDEELVLQLDDLLLRRTRIGLLLPNGAAAELPRIRALCQSRLGWSDAHWEQ
                     QQQRYLELWRSCYSLPRS"
     gene            complement(12416..>12536)
                     /locus_tag="VLF16_04695"
     CDS             complement(12416..>12536)
                     /locus_tag="VLF16_04695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003162439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HSX70212.1"
                     /translation="DHAPYLAAEKGELGMAALKAMAQHFDPESRLAPGVLLED"
BASE COUNT         2051 a         4534 c         4207 g         1744 t
ORIGIN      
        1 gcgcatggtc gggaaggtcg gcgagatcaa cggcgcgatc cgcggcaccg tcaccgccgc
       61 ggaggagatg tccggcagcg aggaaagcaa cctgcgctac ctcgaccagg tcacaggcga
      121 gctgatgcag ggcctgtccg gcagcctcga tgaactcacc gagaccaccc gccagctgca
      181 gcaggacatg cgggtgaccc aggcggacat ccaggaaatc gtcgtcggcc tgcagttcca
      241 ggaccgcgcc gaccagatgc tcgaccacct gcagatcgac ctcgaccgcc tgcgccaggc
      301 caccgaccag ccgcaccccg acctgcagcc ggagcgctgg ttggccgacc tgcgccgcca
      361 gttcaccacc gccgaggaac gccagggacg ccgcggcgcc agcgcccggc aggacgacat
      421 cacctttttc tgagagaacc acccatgagc aagaccatcc tgatcgtcga cgactccctg
      481 tccatgcgcc agctggtgaa gatgaccctc accggcgccg gccatcaggt catcgaggcg
      541 gtcgacggcc gcgacgccct gaacaagctc accggccaga agatcaacct gatcatcagc
      601 gacgtgaaca tgcccaacct ggacggcatc ggcctggtca aggcgctcaa ggcgcgcaac
      661 gaataccgct tcacccccat cgtcatgctc accaccgaaa acgagcagag caagaaggcc
      721 gagggccagg ccgctggtgc caaggcctgg atcgtcaagc cgttccagcc ccagcagctg
      781 ctctccgcgg tcgagaaact ggccagctga gatgatcgag ttccagcaac ccgcgcccct
      841 gcgcctggac ctcaccggca gcctgaccat ctacgaggtg gccgaggccc gcgaggcgct
      901 gctcgccgcc ttcgccggcg cgcgcgatgg cgactggcag ctggacctgg gcgcggtcga
      961 tgaactcgac agcgccggcg cacagctgct gctggccgcc cagcgccatg tgcgcgaggc
     1021 cggcggcgcc ctacagctga accgggccgg tgacgcagtg cgcgagctgc tggcgctgct
     1081 gcggctgaac gagctgctgc ccggcggaga tgcccatgtt caatgacgag cagtggagcc
     1141 aattgctgcg cggcttcatc gaggaaggcc gcgacctcgc caagcaggcg gaggaatacc
     1201 tgctggtgct ggaccaggaa ccggacgacg agcaggccgt gcacggcctg ttccgcgcca
     1261 tgcacacgct caagggctcg gccggcctgt tcaccctcac cccgctggtc aacttcaccc
     1321 accatctgga gagcctgctc agcaccgtgc gcgacggcaa gcgccggctc accgcgccgc
     1381 tgatctcatt gatgctgcgc tgcctcgacg aaatcgcctc gatgctcgac ctgatcgacc
     1441 ccgacagcgg cgagctgccg gtggacgagg cgcaccaggc ccagttgctg gacgccctcg
     1501 ccgagcagac cggcgcaccc agggcgatcg cccatgaggc cgacgatgcc gccgaggatt
     1561 gcgcccgtcg cggcaccctg gaacgctgcg ccggctgtga cgcggccggc gcctggcaca
     1621 tttccctgcg ctttcacccg gacctgctgc gcaacggctt cgacccggcc tcgttcgtcc
     1681 gctacctcgg ccgcctcggc gagatcctgc acctcgagac gctcgccgag cagatgcccg
     1741 acctggtcga gatggacccg gagagctgct acctgggcct ggagatcgcc ctgtgcagct
     1801 cggcgagcaa ggccgagatc gaggacgtgt tcgaattcat ccgcgatttc tgcaccctgc
     1861 gcatcctgcc gccggacagc gccctggacg attacctgaa gctgatccag gacctgccgg
     1921 aaaccgacga gcgcatcggc agcatcctca tcgccagcgg cctgctcacc gagcacgagc
     1981 tggccgaggg cctggcgctg caggccgagg tcggcgacgg cctgaagtcg ccgctcggct
     2041 cggtgctggt cgaggccggt atggtgccgc ccaaggcagt gaatgcggcg ctggccaagc
     2101 agcagtcggc gcgcgagcgg ccgaaccgcg agagcagcca gatccgcgtg gcggccaaca
     2161 agctggacga gctgatcaac ctggtcggcg agctggtcat cagcgccgcc ggcgcgcagt
     2221 tgcaggccca gctacagggc agcgccgatt gcatcgagag cagccagacc gtcaaccagc
     2281 acgtggaagc catccgcgag gcggcgctga agctgcgcat gatcgagatc ggcgacacct
     2341 tcaaccgctt ccatcgggtg gtgcgcgacg tcagccagca gctcggcaag cagatccgcc
     2401 tggacatcca gggcgccgac accgaactgg accgctcggt gatcgacaag ctggccgatc
     2461 ccctcaccca cctggtgcgc aacgccatcg accacggcat cgagtccgcc gagcagcgcc
     2521 tggccgccgg caagccggcc gagggccgcc tgagcctgaa cgcgttccac gactcgggga
     2581 tgatcctcat cgaagtctcc gacgacggtc gcggcctgaa caccgcgcgc atccgcgaga
     2641 aggccatcga gcgcgggctg atcgaccccc aggcgacgct gagcgaggcc gacacccaca
     2701 tgctgatctt cgccgcgggc ttctccaccg ccgacgcggt gtccgacctg tccggccgcg
     2761 gcgtcggcat ggacgtggtg cgcagcgcca tcgacgcgct gcgcggcagc atcgagatcg
     2821 aatcgcgccc cggcctgggc tgcaccttcc gcatccgcct gccgctgacc ctggcgatca
     2881 tcgacggctt cctcgtcagc ctcggcgacg agcacttcgt cattccgctg gagctggtca
     2941 ccgagtgcct ggagctggat gcccgcctgg acagccgcta cggctacctc aacctgcgcg
     3001 gcaaaccgct gccgtgcatc gacctggcgg cgcatttcga actgccgtcg agcgcccagg
     3061 gccggcgcaa catcctggtg gtcagcctcg gccggcaaca ggcggggctg atcgtcgacc
     3121 gcctgcacgg cgagctgcag acggtgatca agccgctcgg cctgctgttc cagcacctgc
     3181 agggcatcag cggctcgacc atcctcggct ccgggcagat cgccctgatc ctcgacgtcg
     3241 ccagcctgct gcgccagctg cagcaacaca tcgaccacga attccgttcc ccgcaaccgc
     3301 gacccgacct gatggggtcg taggagtcca ccatgcaatt catccgcaac atgaagatcg
     3361 gcgtacggct gatcgccggc ttcaccctgg tggtgctcct caccgccctg gtgggtgcgc
     3421 tgggcatcat caacctggcc aaggtcaacg agctgtccga ccgcatgtac caacgggaga
     3481 tgcgcgccct ggagagcatg atgggcgcca acatcgacct catctacctg ggccgccacc
     3541 tgcgcagcaa cctgctagcc acctcgcagc aggagcgcga gagctccgcc gcccaggccc
     3601 aggaagccat ccgcatgatg caccagaaca tcgacgcggc gcgcgacagc ttcgaaagcg
     3661 aagaggcggt ggccaagctg gcggcgctcg aatcgcagct cgccgagtac gagaagaccg
     3721 cgctgcagat gatcgaggcc aaccagaacg agccgctggc ccaaggcggc gccttcagcg
     3781 cgctgatgcc gcagctgcgc agccacggca acgccgcgga tgccaccatc ggcgagctgg
     3841 tggcgcagaa gaaggcccgc gccaaggagg ccaatgacgc cattggcggc atctataccg
     3901 gctcacgcct gcagatgatc gtgctgatcc tgatcgccgc cgttctcggc ttcgccatcg
     3961 gcatgctggt cacccgctcc atcacccgtc cgctgggccg cgccgtggcc gtggcggaca
     4021 gcctggccga aggcgacctg accgtgaccg tcgaggccga cagccgcgac gaaaccggtc
     4081 gcctgctggc gtccatgcag cacatgaccg aacgcctgcg cagcgtcatg gccgatgtac
     4141 gcagcgccgc cgactcgctg tcctcggcct ccgaggaagt cagcgccacc tcgcagtcgc
     4201 tgagccaggc cgccaccgag caggccgcca gcgtcgagga gaccaccgcc tcggtcgagc
     4261 agatgtccgc ctccatcgcg cagaacaccg acagcgccca ggtcaccgac ggcatcgccg
     4321 gcaaggcggc gaacgacgcc gtcgagggtg gccgcgcggt gcgcgagatg gtccaggcca
     4381 tgaagcagat cgccgacaag atcggcatca tcgacgacat cgcctaccag accaatctgc
     4441 tcgctctcaa cgccgccatc gaggccgccc gcgccggcga ccacggcaag ggcttcgccg
     4501 tggtcgccgc cgaggtgcgc aagctggccg agcgcagcca ggtcgccgcg caggagatcg
     4561 gcggcgtggc cggcagcagc gtgcagctgg ccgagcaggc cggggccctg ctcgacgaga
     4621 tcgtgccgaa catccagaag acctccgacc tggtccagga aatcaccgcc gcctcccagg
     4681 aacagagcag tggcgcctcg cagatcaata tcgccatggg ccagatgaac cagatcaccc
     4741 agcagaatgc ctcggcctcc gaggagctgg cggccaccgc cgaggagatg aactcccagg
     4801 ccgggcagct gctggagctg atcggctact tccgcctcag tgcccagcag gccggtgcgg
     4861 cggtgcgccg cgccgagccg ccgcgctcga acaacctgcg cgaattgcgc cgcccggaac
     4921 gccggccgca gccaccggtg gcggacgacg gccagttcgt cagcttcaac tgacggagcc
     4981 gcgcatgaac gccatcaacc ccgttcccgg cgacgcgctg gaagacagcg tgcagcacct
     5041 ctccttccgc gtacgccagg cgcgctacgc gctgccgatc gagctggtgc gcgagatcat
     5101 cgagtacggc caggtcaccg ccgtgccgat gatgcccagc ttcatccacg gcgtgatcaa
     5161 cctgcgcggc aacgtggtgc cggtgctcga cctggcggcg cgcttcggct tcgagctgac
     5221 cgcgccgggc aagcgcacct gcatcgtcat catcgagctg gagctggatg gcaacggcca
     5281 ggcccaacgc atcggcctgg tggtggacgc ggtcgacgcg gtgctcgaca tcgacccgcg
     5341 cgacgtggag caggcgccgc ccttcggcac cggcatccgc accgacttca tcgccggcat
     5401 ggcccgcgac gagggcggct tcaccatcat cctcgacgtg cgccgggtgc tgtcgctgga
     5461 cgacatccgc cagctgagcc tgatgcaaca ggcgggatga tggcccaccc gcacctgccc
     5521 aagctctccg acggcgagtt ccgctacctc cagcagatga tgctggaggc ctccggcatc
     5581 cacatggccg acagcaagcg caccctggtg gccgggcgcc tgatgtcgcg cctgcgggca
     5641 ctggaccagg gcgacttcta cgagtacgtc ggcttcctgc gccagccggc caacgaggac
     5701 gagcgccgcc tggtgatcga cctgctgacc accaacgaga cctacttctt ccgcgagccc
     5761 cagcattttc acttcctcgg tgactgggtc gccgcccagc gcgggccgct gcacctgtgg
     5821 agcgccgcca gttcgtccgg cgaggaggcc tacagcatcg ccatgaccct ggccgagcgg
     5881 gcgcgcacgc cgcactggtc gatcttcgcc agcgacctca gccggcgcgt gctggagaag
     5941 gcgcgccagg ccatctaccc gctggagcag gccgcgcaat tccccgatgg ctggctgcag
     6001 cgccactgcc tgcggggcgt caacgagcac gccggcaact tccgcatcgg ccagccgctg
     6061 cgccaccgcg tggccttcgc cgaactcaac ctgatgcgcg acctgccggc ggaagtcggc
     6121 ccgttcaatg tcatcttcct gcgcaacgtg ctgatctact tcgccgcgcc ggacaagcgc
     6181 gccatcgtcc agcgcctgat cgggcgcctg cgcccgggcg gcctgctgtt catcggccac
     6241 gccgagagcc tgcacggctt cgacctgccg ctgcgggcgc tgcgcccttc cgtgttcgag
     6301 cgccagtgag gtcgtcatga tcaaggtctt catcgtcgac gactcggccc tggtccgcca
     6361 ggtgctgacc gcctgcctcg acaagcatcc gggcatccgc gtcatcggcc aggccgccga
     6421 cccgctgttc gccctggaaa agatgcgtcg ggaatggccc gacgtgctgg tactggacgt
     6481 ggagatgccg cgcatggacg gcatcacctt cctgcgcaag atcatggccg agcgcccgac
     6541 cccggccatc atctgctcga ccctcaccga ggccggcgcc gacgtgaccc tggaggccct
     6601 ggccgccggc gccgtgggcg tgttcaccaa ggcgcgcctg ggcctgaagg acagcctgca
     6661 gcagatctcc ggcgacctga tcaagcagat cgagaccgcc gcccgcagcc agccgcacgc
     6721 catgccgcgc gccgccgcgg cgccggccgc cgccgcacct gcccgggagg cgaagccggc
     6781 cgcgcccatg ggcttcgcca ccaccgaccg ggtggtggcg ctgggcacgt ccaccggcgg
     6841 tacccaggcg ctggaggtgc tgctgcgcca gctgcccgag gactgccccg gcatcgtcat
     6901 cgtccagcac atgccggaga agttcaccgc tgccttcgcc cagcgcctgg acagcgtgtg
     6961 ccgcatcgag gtgcgcgagg cgcggcacat ggaccgggtg cgttccggcc tggcgctggt
     7021 ggcgccgggc gggcggcaca tgcagctcaa gcgcagcggg gcgcagtacc tggtcgaggt
     7081 gctcgacggc ccgccggtga accgccacaa gccgtcggtg gacgtgctgt tccgctccgt
     7141 ggcgcgccat gccgggcaca acgccctggg catcatcatg accggcatgg gcgacgacgg
     7201 cgcccgcggc ttgctggcga tgcgcgaggc cggcgcgcgc accgtggccc aggacgaggc
     7261 cagctgcgtg gtcttcggca tgcccaagga ggccctgcgc ctgggggcgg cgcagagcag
     7321 cgaagcgctg cagaacctgc cggcgctgat cgtccagtac ggccgggcac gaccgcaggt
     7381 cgcttcgggc gaaccttgac cgttcggacg actccctagc tgaaaccgct accactcgcc
     7441 ccggcgtcgc caacggctac gcgtgttcgg aatcggggcc gacgggaggg aaccagagat
     7501 gcacgccttt gcgccctgcg ccgactgccc cgcaccacac gccaggagat ggcgatgagt
     7561 cgccgtctgc tgctcgccga cgatcatgcc ctgatccgcg tcggtgtccg cgccatggtc
     7621 gacgacctgc ccgacttcga gatcgtcggc gaggccgagg acggccagca ggtggtcgag
     7681 aaggcccgcg agctgaagcc ggacatcatc ctgctggaca tctcgatgaa ggacgtcagc
     7741 ggcctggagg cgctgcagcc cctggccgag gtggcgccgg ccagcaaggt gctgatgctg
     7801 tccatgcaca gcgaggccgg cgtggtgctg gacgcgctgc gccgaggtgc ccagggctac
     7861 ctgctaaagg atgcggcgat ggtcgagctg ccgctggccc tgcgcgccat cgaccgcggc
     7921 gagcgctacc tgagctcggc catcgcccag ccggtgatcg agcaggccct gtccaacgaa
     7981 aatgcccggg cggaccacga gctgacccag cggcaggtgg agatcctcag gctgatcacc
     8041 cgcggcgcct cgacccgcgc catcgccgat ggcctgggcc tcagcgtgaa gacggtggag
     8101 gcccatcgcg cgcagatcat gaagcgcctc gacatccacg acgtgcccgg cctggtgctc
     8161 tacgccctgc gcgaggggat catcagcacc gacgactagc cgccgagcag cggcgagatg
     8221 ttcggcaggt gcaggcgcag ggcgcccggg cgggcggcga agcgcaggcg gtgcccttcc
     8281 agcggctcgc catcgaggtt gatatccagc ccctcgggcg cctccacctc cagccacggc
     8341 aggcgcgcgc tgattgagac cgcctcgaga ccgagaatgc cgccggacag cagggtgccg
     8401 agagtgccga ccagatcctg cgaggccggc acgatgcaga tgtccagcag gccgtcgtcg
     8461 atgctggcct gcgggcacat cacatggccg ccgccggcct ggcgcccgtt gccgatgccg
     8521 agggcgagga aatccccttc ccagctgaag tccggcccgc ggaagcgacc gaacgccgaa
     8581 cgcacctcgg agaaacgccg cagaccggtg aggaaatagg cggcgccgcc gagcaggctc
     8641 ttgagttctt ccggggtgtt gaccgtgacc ttggagccga agccgccggt ggccatgttg
     8701 aggaacagct ggccgtcgac ctcgcccagg tcgatcggcc gcgcctcgaa ccccagcagg
     8761 gacagggcct cggccggcgc cagcggaatg ccggcggcgc gggcgaaatc gttggcggtg
     8821 cccagcggca gcagcgccag gctggccgtg ccgccggcca gcgccagggc ctcggccacc
     8881 tcgcgcaggg tgccgtcgcc accgccggcg atcagcgtcg ggtagccggc ggccagcgcc
     8941 tcgtccacca gccgcgccgc gtcgccgccc tcccaggtca ggcgcacgcc caggtcccag
     9001 cccgcctcgc gccaggccat cacggcggcg cgcacctcct cgttctgcgc ttgcttgcca
     9061 tgcaggatca gcagtgccct ttgctcgctc acggatcgct ctcccctcgg cggttcatcc
     9121 gagtacagca gaccgcgggc aaggcgtgaa agtgccggct accgctgcgc ttgtccggct
     9181 tgcccggctt ttccggctag gccgggtagc cggtgatctc gcggatgctg ccgtacagcg
     9241 gcttgagctg ccggtacatg cgcaggtaga cctcgcggta caggcgctcg tacaccgcca
     9301 ccgcctgcgg gttgggctgg aagaccttgc cgacgcgggt catggcggcg atggccgtgg
     9361 ggaagtccgg gtgcaggccg aggccgacgg cgcagtcgat ggccgcaccc aagccggagg
     9421 cctcgtacag gtgcgggcgc tcggccggca ggttgaagat gtcggcggtc agctgcatgg
     9481 ccgcatcgct ctgcgagccg ccgccggaaa tgcgcaggcg ctggatgcgc gtgccggagc
     9541 gtttctcgat gcgctccttg ccctggcgca gggcgtaggc caggccttcg aggatcgcgc
     9601 ggtacaggtg cgcgcgggta tgcacgtcgc caaaaccgat gatcgagccc ttagcctcca
     9661 gcccgggctc gcggatgccc ggcgaccaga acggctgcag catcagaccc atggagcccg
     9721 gtggcacgcc ctccaccagc tcgtcgaaca gggtctcggc ggccaccccc agctccaggc
     9781 cgcgctggcg ctcggcatgg ccgaactgct ccttgaacca gctgaccatc cagaaaccgc
     9841 ggaacaccat gacctcggtg ttgtagtggt cgggaatcgc cgccgggtaa ggcgggatca
     9901 gcgggatggt ctccagatac ttggcgcgcg tggtgttgat ggtcgccgtg gtgccgtagg
     9961 acaggcacgc cgtactcggc tccacaccgc cggcaccgat cacctcgcag gccttgtccg
    10021 acgcggcggc gatcagcggc aggccctcgg gaatgccggt gtgccggctg gcctcggcgc
    10081 tgatgctgcc gatgcgctca cccggcttga ccagctccgg cagcatgtcc gggcgcaccg
    10141 ggatggcctg ccacttccag tcgctgggct tggcccagca caggcgcttg tagtcgaacg
    10201 gcaggtaggc cacgcagctg cccaccgagt cggcgaagcg gccgcacagg cgatgggtga
    10261 ggaagcccga gagcagcagg aacttgtgcg tacgcgccca gatctccggc tgctgctggg
    10321 tgatccagtt ggcctcggcc tggctgcgga aatagtcgat ggtctcttct tcgcggatca
    10381 gcttgaacag ccagccccag ggcccggtga tgcggccctc gacctcggcg cggcgctgat
    10441 cgagccagag gatggccggg cgcagcggct ggccggcctc gtcgacgttg atcagggtgc
    10501 cgcgctgggt ggtcagcgac accccggcga tccggctctt gtcgatatcg acgctggccc
    10561 acagctggcg gcacgcctcg ccgaggctgg cccagtagta ctccgggtcc tgctcggccc
    10621 agccgggatg ctcggagtaa tagggttcca gctccacctt gcccttgccg accagattgc
    10681 cggccaggtc gaagagcagc gcgcgcacgc tctgggtgcc gttgtcgatg gccagcagat
    10741 agcgttcggt caactcacag tcctcgagta gggtgcgccg cgtgcaccag ccggatggtc
    10801 acggtgcgca gggccttggc ggccccgcgc actctacgag cggggcaggc tgtagcagct
    10861 gcgccacagc tccagatagc gttgttgttg ttgttcccag tgcgcatcgc tccagcccag
    10921 gcgcgactga cacagggcac ggatgcgcgg cagctcggcc gccgcgccgt tcggcagcag
    10981 caggccgatg cgggtgcggc gcagcagcag gtcgtccagt tgcagcacca gctcctcgtc
    11041 gcaggccagg gccagctcgg cccagagcgc gttgctggtg ccgacgcatt catagcccag
    11101 ctcgccgatc agctcggcca gatgcggcag cgcatgacca tggcgcccag ccaggcggcg
    11161 ccgctggctc aggcacaggc cgggcagtgc cacttgcggc ggctcgcgga agaccgcctg
    11221 gccgacgtcc gccacctcgc gcccgagcat cggcgcgcag gcacgtagca cctccagggc
    11281 gagcaggcgg aaggtggtca acttgccgcc ggccagggtc acgcagccag gctcgaccca
    11341 cagggcatgc tcgcgtttct cgtccgaagg cctcctgctc aagccctcct ctgcgctgac
    11401 cacggggcgc acgccggccc aggtcgacag cacatcggcg cggccgacgc cggcctgggg
    11461 aaacacgctg gcgcaggcgg ccagcagata ttcgacctcg gcatcagtga ttcgcgcgtc
    11521 gcggctcagc gcctcgtcgt ggtccaggtc ggtggtgccg actaccgtgg caccctccca
    11581 gggaaatacg aaggcgggcc tgccatcgtc cgggtgcatg aagctgatgg cctgggccac
    11641 cggcaggcgc caggctggca gcagcagatg gctgccgcgc agcgggcgga tatgttccag
    11701 gccgctcctc ttgcgcagct cgtcggccca ggcgccggtg gcctgggcca cgacgcgggc
    11761 gcggaacgcg aagcgccggc cgctctcgct gtcctcggcg accaggccgt tcactcgtgc
    11821 accatcgcgg ctcagctcga tgacgcgcat gccattgagc gcctcgccgc cttcggcccg
    11881 cgcctcgccc agcacgcgca tcaccagacg cgcatcgtcg gtcaccgcat cggtgaacag
    11941 ggtgccgccg agcagctcgg tgtcgttcag gcccggcgcc aagtagcgca gctcgccggc
    12001 cgggcgatag cggtgcaggc gctggccggc cagggcgtcg tagacgccga gcaggccgcc
    12061 gaacaccctg ggcccgggga acttgccgcg atagtggggg aacaggaacg gcagcgggtc
    12121 gaccagcccc ggtgcctcgc cgagcaggcg ctggcgctcg cgcaccgagt cgcgggtcag
    12181 gcccagctgg cccttggcga tgtagcgcag gccgccgtgg accatcttcg acgaacgact
    12241 ggaggtgccc caggcgaagt cgcgctgctc cagcatcagg cagctccagc cacgccgcgc
    12301 cgcctcgcgc aggatgccgg cgccgctgat gccgccgccg acgacgatca ggtcccagtc
    12361 gcgcgccgcc agctcgggca gcgccgcctc gcgccacggt gcattccagc tcatctcagt
    12421 cttccagcaa cacgcccggt gccaaacggc tttcgggatc gaagtgctgc gccatcgcct
    12481 tgagcgccgc catgcccagc tcgcccttct ccgccgccag gtacggcgca tggtcg
//
LOCUS       DATIHC010000292         1883 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5631, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000292 DATIHC010000000
VERSION     DATIHC010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1883
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5631"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(30..1007)
                     /locus_tag="VLF16_04700"
     CDS             complement(30..1007)
                     /locus_tag="VLF16_04700"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HSX70213.1"
                     /translation="MSHPFATLTPDLVLNAVESLGYLSDARVLALNSYENRVYQVGIE
                     DGEPLIAKFYRPDRWSDAAIREEHAFSHELAEYEVPVVAPLQQGGESLFEHAGFRFAL
                     FPRRGGRAPEPGNLDQLYGLGQLLGRLHAVGASRPFEHRETLAVDNFGHASLATLLEG
                     DFVPRSLLPAYESVARDLLKRLDELFARVRYTPIRLHGDCHPGNLLHRGDAFHVVDLD
                     DCRMGPAVQDLWMLLAGERQERLGQLAELVDGYQEFHDFAARELPLIEGLRALRLMHH
                     SAWIARRWDDPAFPLAFPWFANERYWGDQILMLREQLAALDEEPLRLFG"
     gene            complement(1054..1743)
                     /gene="modB"
                     /locus_tag="VLF16_04705"
     CDS             complement(1054..1743)
                     /gene="modB"
                     /locus_tag="VLF16_04705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019365508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HSX70214.1"
                     /translation="MLLTDSDWQALAITLQLAGLSTALLLAIGLPLAAWRVRKQTALR
                     RVLDAVLALPLVLPPTVLGFYLLVLFAPDTPLGQAWHWFTGQGLAFSFAGLVLGSVLY
                     SLPFVVQPLTVALREIPQSLLEAAASLGANRWERLLRVVLPLLRRGILVAGTLGFAHT
                     LGEFGVVLMLGGSIPGETQVVSIALFQHVEALRYGEAHRLAACLLGLSFLLLLLVYGL
                     GDTRRAAPMRG"
BASE COUNT          305 a          638 c          697 g          243 t
ORIGIN      
        1 gggcctgcgg ctggtgcgcg aaggctgact cagccgaaca gccgcagcgg ctcctcgtcc
       61 agcgccgcca gctgttcgcg cagcatcagg atctggtcgc cccagtagcg ctcgttggcg
      121 aaccagggaa acgccagcgg gaaggccggg tcgtcccagc gccgggcgat ccaggcgctg
      181 tggtgcatca ggcgtagcgc gcgcaggcct tcgatcagcg gcagctcgcg ggccgcgaag
      241 tcgtggaatt cctggtagcc gtcgaccagc tcggcgagct gcccgaggcg ttcctggcgt
      301 tcgccggcca gcagcatcca caggtcctgc acggccgggc ccatgcggca gtcgtcgagg
      361 tcgaccacat ggaaggcgtc gccgcggtgc agcaggttgc ccgggtggca gtcgccgtgc
      421 aggcggatcg gcgtgtagcg cacgcgggcg aacagctcgt ccaggcgctt gagcaggtcg
      481 cgcgccaccg actcgtaggc cggcagcagg ctgcgcggga cgaagtcgcc ttccagcagg
      541 gtggccagcg aggcgtggcc gaagttgtcc accgccagcg tttcgcggtg ttcgaagggg
      601 cggctggcgc cgaccgcgtg caggcggccg agcagctggc caaggccgta cagctggtcc
      661 agattgcccg gctccggcgc gcggccaccg cggcggggga acaaggcgaa gcggaagccg
      721 gcgtgctcga acaggctctc gccgccctgt tgcagcggcg ccaccaccgg cacctcgtac
      781 tcggccagct catggctgaa ggcgtgttcc tcgcggatcg ccgcgtcgct ccagcgatcc
      841 gggcggtaga acttggcgat cagcggctcg ccgtcctcga tgcccacctg gtagacgcgg
      901 ttctcgtagc tgttcagcgc cagcacgcgg gcgtcgctga ggtagccgag gctctccacg
      961 gcgttgagga ccaggtcggg ggtgagggtg gcgaagggat gggacatggg gcgctccgta
     1021 atcaggcgcc cagtctatcc ggtaaatggc gtctcaaccg cgcatcggcg cggcgcggcg
     1081 tgtatcgccc aggccgtaga ccagcagtag cagcaggaac gacagcccca gcaggcaggc
     1141 cgccaggcgg tgcgcctcgc cgtagcgcag ggcctcgacg tgctggaaca gggcgatgga
     1201 caccacctgg gtctcgccgg ggatgctgcc gccgagcatc agcaccacgc cgaattcgcc
     1261 cagggtgtgg gcgaagccga gcgtgccggc gaccagaatg ccgcgccgca gcagcggcag
     1321 caccaccctc agcaggcgct cccagcggtt ggcgccgagg ctggcggcgg cctccagcag
     1381 gctctgcggg atctcgcgca gggccacggt cagcggttgc accacgaagg gcagggaata
     1441 gagcaccgag cccagcacca ggccggcgaa gctgaaggcc aggccctggc cagtgaacca
     1501 gtgccaggcc tgaccgagcg gagtgtcggg ggcgaagagc accagcaggt agaagcccag
     1561 cacggtcggc ggcaacacca gcggcagggc cagcacggcg tcgagcacgc ggcgcagcgc
     1621 cgtctgcttg cgcacgcgcc aggccgccag cggcaggccg atcgccagca gcagggcggt
     1681 ggacagcccg gccagctgca gggtgatggc cagggcctgc cagtcgctgt cagtcagcag
     1741 cacagccggc ctcgccgggc aggccgtagc cggccgcctt cagggtgtct ttctgcgcgt
     1801 cgaagaaggt tagaaaagcc tcggccgctt ctcgacgctc gcccttggcc agcagcacgc
     1861 tcttctgcac cagcggctcg tag
//
LOCUS       DATIHC010000293         1769 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5639, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000293 DATIHC010000000
VERSION     DATIHC010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1769)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1769)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1769
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5639"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..291)
                     /locus_tag="VLF16_04710"
     CDS             complement(<1..291)
                     /locus_tag="VLF16_04710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70215.1"
                     /translation="MTLGRCQACEGRELRSLYEMQSGLALTSLGETYVASTRVWVCLE
                     CSHLQTEEMEQVEQYYAEQYNILADSEEEDQVYEVRNGKPLYRTQHQLDVLQG"
     gene            complement(288..1127)
                     /locus_tag="VLF16_04715"
     CDS             complement(288..1127)
                     /locus_tag="VLF16_04715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017132850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HSX70216.1"
                     /translation="MSEEQREVFSRDGVLILPGFYDLQRDILPVQRGIHDIIGLVLDK
                     YRLPIEQKPFSAETFDSGFQALISSNRAYGGEVYDAVKQIPGFIRLVAHPLHDQLFRE
                     LRGASSIPGVAAGGYGIRIDNPGEDRFRAHWHQEYPAQLRSLDGLVFWSPLLPITEQL
                     GPVRFCLGSHQQGPVPVCSQEVSGRTDAYALVLHQEQERIARYRQVAPLTMPGDLVVV
                     DFLVLHASGFNRAERSRWSMQLRYFNFCDPTGRSHGWKGSYAAGVDFRTVHPELYIDQ
                     EAQ"
     gene            complement(1139..>1769)
                     /locus_tag="VLF16_04720"
     CDS             complement(1139..>1769)
                     /locus_tag="VLF16_04720"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HSX70217.1"
                     /translation="GSLSTFSVFSFHGTKVMTTGEGGMLATADAALARRVEQLNNHGR
                     AAGDMRQFWPSELGHKYKMSNLQAALGCAQLERLEEMVQRKREIFRFYRDHLLDALPG
                     TRMNPEPEGCRNSYWMPTLVLPRNAPVALPHILEHMRLQGIDARVFFQPLSDTPVFAG
                     LSNSPTPLAHDLATRAFNLPSYHDMSLEDQQRVVAVVIDAVRGKPGVSS"
BASE COUNT          326 a          574 c          561 g          308 t
ORIGIN      
        1 gccctgcagt acgtccagtt ggtgctgggt gcgatacagg ggcttgccgt tgcgcacctc
       61 gtagacctga tcctcttcct cgctgtcggc caggatgttg tattgctcgg cgtagtactg
      121 ctcgacctgc tccatttcct cggtctgcag gtgagagcac tcgaggcaca cccatacccg
      181 ggtggaggcg acataggtct cgccgagaga agtcagcgcc agccccgact gcatctcata
      241 cagcgaccgc agctcgcgcc cttcacatgc ctgacagcgg cccagagtca ttgcgcctcc
      301 tgatcgatat aaagctcggg gtgaaccgtt cggaaatcca ccccggccgc gtaggaaccc
      361 ttccagccat gggagcggcc ggtcggatcg cagaaattga aatagcgcag ctgcatcgac
      421 cagcgcgaac gctccgcccg gttgaaaccg gaggcgtgca gcacgaggaa atccaccacc
      481 accaagtcgc ccggcatggt cagcggagcg acttgtcggt agcgcgcgat gcgttcctgt
      541 tcctggtgca gcaccagcgc gtaggcatcc gtacggccgc tgacctcctg gctacagacg
      601 ggcaccggcc cctgctgatg agaccccagg cagaagcgca caggcccgag ctgctcggta
      661 atgggtagca gcggactcca gaacaccagg ccgtcgaggc tgcgcagctg cgccgggtat
      721 tcctggtgcc agtgcgcgcg gaagcggtct tctcccgggt tgtcgatgcg gatgccgtag
      781 ccccccgccg ccactcccgg tatcgacgat gcgccacgca gttcacggaa cagctgatcg
      841 tgaagcggat gcgccaccag gcgaatgaag cccgggatct gcttgaccgc gtcgtagacc
      901 tcgccgccgt aggcgcggtt tgacgagatc agcgcctgga agccgctgtc gaacgtctcg
      961 gcgctgaacg gcttctgctc gatgggcagg cggtacttgt ccaataccag gccgatgatg
     1021 tcgtggattc cgcgctggac cgggaggatg tcccgctgca gatcgtagaa gccgggcagg
     1081 atcagcacgc catcgcggct gaaaacctcc cgctgctcct cgctcaacag ggttgggctc
     1141 atgacgacac tccaggcttg ccacgcaccg catcgatgac caccgcgacc acccgctgct
     1201 gatcctcgag gctcatgtcg tggtagctgg gcaggttgaa tgccctggtg gccagatcat
     1261 gggccagcgg cgtaggcgag ttcgaaagac cggcgaagac cggcgtatcg ctcagcggct
     1321 ggaagaacac cctggcgtcg atgccctgca gacgcatgtg ttcgagtatg tgcggcaacg
     1381 caaccggggc gttgcgcggc agcaccaggg tgggcatcca gtagctgttg cggcagccct
     1441 cgggctccgg attcatccgg gtaccgggca aggcatccag cagatggtcg cgatagaacc
     1501 ggaagatctc ccgcttgcgc tgcaccatct cctcgagacg ctcgagctgc gcgcacccca
     1561 gggcggcctg caggttggac atcttgtact tgtggcccaa ttccgagggc cagaactgac
     1621 gcatgtcgcc cgcggcgcgc ccgtgattgt tcagttgctc gacacgcctg gccaacgccg
     1681 catcggccgt ggccagcatg ccgccttcac cggtggtcat gaccttggtg ccgtggaagg
     1741 aaaacaccga aaaggtcgac aggcttccc
//
LOCUS       DATIHC010000294         2107 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19443, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000294 DATIHC010000000
VERSION     DATIHC010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2107
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19443"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..274
                     /locus_tag="VLF16_04725"
     CDS             <1..274
                     /locus_tag="VLF16_04725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019472168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HSX70218.1"
                     /translation="LYAARSMMYATAASNDAGGDIKVQAPMCKLYASETAFRIIDRAV
                     QIHGGAGLIKGHPVEWLFRASRMMRILTGTSEIQRNTIAKGILMPA"
     gene            343..1641
                     /locus_tag="VLF16_04730"
     CDS             343..1641
                     /locus_tag="VLF16_04730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSX70219.1"
                     /translation="MTREETGFRPRSAWTIAFLLAFMMLVNFLDKVVIGLVGVPMTQE
                     LGLTPTEFGLIGGALHWLFAVSAVVGGFLANRRPTRTLLLGMGLFWALIQLPMLFASS
                     LWMIVACRVLLGIGEGPASPVATHALYKWFPDDRRSLPVALLHSGSAMGLLVAGAMIP
                     WISLNYGWRTNFAVLAVIGLIWCALWLLLGREGTLDNLRAGQVATDTRRVPYRRLLGD
                     GSVLGNYACHFAANWSLALTLTWVPSYLEIGLGIDPLKTGHMFVMFVLVTTPLSLFMA
                     WLSQRLMRRGVPSRLARGAFVSACLIAGGLFSASLMLTELSVTTRIIALTLSGGLALV
                     MYSVGPAMLAEFTPSSQRGGILAIGNAVASLAGLSAPVITGLLVHGAGATHPDGYAQG
                     FMVCGIVMIVAGLIGLVAMNPQRSLERLAQDDAPALASRA"
     gene            complement(1605..>2107)
                     /locus_tag="VLF16_04735"
     CDS             complement(1605..>2107)
                     /locus_tag="VLF16_04735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012018234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HSX70220.1"
                     /translation="AEPIFTEDLYWVGQGDALSDDAPISLAEAAATRLVMAPRALHLR
                     RRIEQAAMETGVVLNVAYEQQSAPGIASLVRSGLAATISNWPPLEELFQPTAARLIVE
                     PRITRTVSIAHSVHKPLSFAASCMRDLVRGILLDAVRTGRWRGSLIERGADEDQAREA
                     SAGASS"
BASE COUNT          286 a          786 c          694 g          341 t
ORIGIN      
        1 gctgtacgcg gcgcgcagca tgatgtacgc caccgcggcc agcaacgatg ccggcggaga
       61 catcaaggtg caggcgccga tgtgcaagct gtacgcctcg gagaccgcct tccgcatcat
      121 cgaccgcgcc gtgcagatcc acggcggcgc cggtctgatc aagggtcatc cggtcgaatg
      181 gctgttccgc gccagccgca tgatgcgcat cctgaccggc accagcgaga tccagcgcaa
      241 caccatcgcc aagggcatcc tgatgcccgc ctgaggcatt gccgtacccc gtccgccagg
      301 gaagccgggc ggggcgttca caacaacaag agagtattcc ccatgacccg agaagaaacg
      361 ggcttccgtc cgcgcagcgc ctggaccatc gccttcctgc tggccttcat gatgctggtc
      421 aacttcctcg acaaggtggt gatcggcctg gtcggcgtac ccatgaccca ggaactgggc
      481 ctgaccccga ccgagttcgg cctgatcggc ggcgccctgc actggctgtt cgccgtgtcc
      541 gcggtggtcg gcggcttcct cgccaaccgc cgcccgaccc gtaccctgct gctcggcatg
      601 ggcctgttct gggcgctgat ccagctgccc atgctgttcg ccagctcgct gtggatgatc
      661 gtcgcctgcc gcgtgctgct cggcatcggt gaaggccccg cctcgccggt cgccacccac
      721 gccctgtaca agtggttccc cgatgaccgc cgcagcctgc cggtggcgct gctgcactcc
      781 ggcagcgcca tgggcctgct ggtggccggc gcgatgatcc cgtggatcag cctgaactac
      841 ggctggcgca ccaacttcgc cgtgctcgcc gtgatcggcc tgatctggtg cgcgctgtgg
      901 ctgctgctgg gccgcgaagg cacgctggac aacctgcgcg ccggccaggt ggcgaccgac
      961 acccgccgcg tgccctaccg ccgcctgctc ggcgacggca gcgtgctcgg caactacgcc
     1021 tgccacttcg ccgccaactg gtcgctggcg ctgaccctga cctgggtgcc gagctacctg
     1081 gagatcggcc tgggcatcga cccgctgaag accggccaca tgttcgtcat gttcgtgctg
     1141 gtgaccacgc cgctgagcct gttcatggcc tggctgtcgc agcgcctgat gcgccgcggc
     1201 gtgccctcgc gcctggcgcg cggcgcgttc gtctcggcct gcctgatcgc cggcgggctg
     1261 ttctccgcct cgctgatgct caccgagctg tcggtgacca cgcgcatcat cgccctcacc
     1321 ctgagcggcg gcctggccct ggtgatgtat tcggtggggc cggcgatgct cgccgagttc
     1381 acccccagca gccagcgcgg cggcatcctc gccatcggca acgcggtggc ctcgctggcc
     1441 ggcctgtcgg caccggtgat caccggcctg ctggtgcacg gcgccggcgc cacccacccg
     1501 gacggctacg cccagggctt catggtctgc ggcatcgtga tgatcgtggc cgggctgatc
     1561 ggcctggtgg cgatgaaccc gcagcgctcc ctcgagcgcc tggctcagga cgacgcgccg
     1621 gcactcgcct cgcgcgcctg atcctcgtcg gcgccgcgtt cgatcaggct gccgcgccag
     1681 cgaccggtgc gcaccgcatc cagcaggatg ccgcgcacca ggtcgcgcat gcacgacgcg
     1741 gcgaacgaca gcggcttgtg caccgagtgg gcgatggaca cggtgcgggt gatgcgcggc
     1801 tcgacgatca gccgcgccgc cgtgggctgg aacagctcct ccagcggcgg ccaattgcta
     1861 atggtcgccg ccaggccgct gcgcaccagg ctggcgatac ccggcgccga ctgctgctcg
     1921 taggccacgt tgagcaccac ccccgtctcc atcgccgcct gctcgatacg ccggcgcagg
     1981 tgcagcgccc gcggcgccat caccaggcgc gtggccgcgg cctccgccag gctgatcggc
     2041 gcatcgtcgc tcagcgcatc gccctgcccc acccagtaca ggtcctcggt gaagatcggc
     2101 tcggcgg
//
LOCUS       DATIHC010000295         7254 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7788, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000295 DATIHC010000000
VERSION     DATIHC010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 7254)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7254)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7254
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7788"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..434)
                     /locus_tag="VLF16_04740"
     CDS             complement(<1..434)
                     /locus_tag="VLF16_04740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HSX70221.1"
                     /translation="MLHFLPAPLRGLISALLLALNTLICCWPLFAVALLKLLLPFPPA
                     QRVLRKVMHGIAEFWIGFNKFWMRLVRDTRWDVEGLQGLDMRHSYLVTSNHQSWVDIL
                     VLQYLLNQRMPLLKFFLKQELIWVPVIGLCWWALEFPFMKRYT"
     gene            complement(820..2919)
                     /gene="pta"
                     /locus_tag="VLF16_04745"
     CDS             complement(820..2919)
                     /gene="pta"
                     /locus_tag="VLF16_04745"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016407 - acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HSX70222.1"
                     /translation="MHTFFIAPTGFGVGLTSISLGLVRALQRAGLKVGFFKPIAQPHP
                     GDSGPERSSELIARTHGLLPPRSLPLAQVERMLGDGHLDELLEEIVSLHQQAAEGMDV
                     LIVEGMVPTRHASYAARVNVHLAKSLDAEIILVSAPEGDEPEKITELSDRIEIQAQLF
                     GGPKDPKMIGVILNKVRHPEGVEAFTDELGRLSPLLRSGDFRVLGCIPWQDELNAPRT
                     RDVADLLGAQVLNAGDYEQRRVNKIVLCARAVPNTVHLLKPGVLVVTPGDRDDIILAA
                     SLAAMNGVPLAGLLLCSDFPPDARIMELCQAALQGGLPVLTVSTGSYDTATNLNRMNK
                     EIPIDDRERAEKVTEFVAGHIDLDWLKQRCGTPRELRLSPPAFRYQLVRRAQAANKRI
                     VLPEGSEPRTVQAAAICQARGIARCVLLAKPEEVHAVAKAQGIELPEGLEILDPEAIR
                     EHYVEPMVELRKGKGLNAPMALAQLEDSVVLGTMMLALDQVDGLVSGAIHTTANTIRP
                     ALQLIKTAPGYNLVSSVFFMLLPDQVLVYGDCAVNPDPNATELAEIALQSAASAESFG
                     VPARVAMISYSTGDSGSGAEVEKVREATRLAREANPALLIDGPLQYDAAAIASVGRQK
                     APNSPVAGRATVFVFPDLNTGNTTYKAVQRSADCVSVGPMLQGLRKPVNDLSRGALVD
                     DIVFTIALTAIQAAAKH"
     gene            complement(2937..4124)
                     /locus_tag="VLF16_04750"
     CDS             complement(2937..4124)
                     /locus_tag="VLF16_04750"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019342135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006085 - acetyl-CoA biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HSX70223.1"
                     /translation="MPARNILVINCGSSSIKFALVNEAHSQFTLSGLAERLGSHDAVL
                     HWQRGGEKDSLMLPNGDHRAALHQLLPLVQGAAGGKLHGIGHRVVHGGEQFTAACRID
                     PHSLQAIRATAPLAPLHNPANLLGIEAALKLFPNLTQVAVFDTAFHQSLPEHAYRYAV
                     PEALYREHGVRRYGFHGTSHRYVSRRAAEMAGLSHGDSSWLSAHLGNGCSTCAIVDGQ
                     SRDTSMGLTPLEGLVMGTRSGDVDPNLHGHLARTLGWSLEKIDAMLNKDSGLLGLSGL
                     SNDMRALEQARDQGHPGAALAIEVFCYRLAKSLAAMSCALPQLDGLIFTGGIGENSPL
                     IRSKTVAHLKLFNLALDKEANARCIRGVGGAIQAHGHPRVLVVPTNEERQIALDTLAL
                     LTA"
     gene            complement(4127..4405)
                     /locus_tag="VLF16_04755"
     CDS             complement(4127..4405)
                     /locus_tag="VLF16_04755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014755346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3565 domain-containing protein"
                     /protein_id="HSX70224.1"
                     /translation="MQENGRGPSLLATPAESDRGTDGRTTRLLGFHQDEDGHWVAELS
                     CGHTQHLRHLPPWQNRAWVLDPLERQRLLGQPFACGWCANETETASKE"
     gene            4420..4905
                     /locus_tag="VLF16_04760"
     CDS             4420..4905
                     /locus_tag="VLF16_04760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HSX70225.1"
                     /translation="MQIAANKAVSIDYTLTNDAGEVIDSSAGGAPLVYLHGAGNIIVG
                     LEKALEGKQAGDELSVAIEPADAYGEYSAELVATLNRSMFEGVEELEVGMQFHASGPD
                     GGMQIVTIRDIEGDDVIVDGNHPLAGQRLNFQVKVVDVREANAEEIAHGHIHGEGGHH
                     H"
     gene            5046..5528
                     /locus_tag="VLF16_04765"
     CDS             5046..5528
                     /locus_tag="VLF16_04765"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004602 - glutathione peroxidase activity
                     [Evidence IEA];
                     GO_function: GO:0043295 - glutathione binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HSX70226.1"
                     /translation="MSAFHDLNLRALDGQDLPLAPYKGQIVLVVNVASKCGLTPQYAG
                     LEKLYQEYRERGFTVLGLPCNQFAGQEPGGEDEIREFCSLNYGVTFPLGSKLEVNGPG
                     RHPLYRLLAGEGAEFPGDISWNFEKFLVGRDGRVLARFSPRTTPDDPALVQAIEKALG
                     "
     gene            5619..6356
                     /locus_tag="VLF16_04770"
     CDS             5619..6356
                     /locus_tag="VLF16_04770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003240510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HSX70227.1"
                     /translation="MTSFTPDDLNPTASPQALRALIESRRAVRRFLAEPVPDEVIRDC
                     LELAVLAPNSCNLQPWSFQVVRDPALLARLHRVCMSQNAAKAPLIIAVLARPDTWRQA
                     CANVVDYWPEPEVPARIRHFYAKTAPFQYNQGPLGLLGLFKRQLVRLAALRKPLMRTP
                     NSRADMRLWAVKSTALAAENLMLAFQSHGYATCPMEGFDEVRLRKVLDIPRRAIPIML
                     LAVGRQGEKGVYNPRMRFPLEQHVTWL"
     gene            6482..7075
                     /locus_tag="VLF16_04775"
     CDS             6482..7075
                     /locus_tag="VLF16_04775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019342138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator C-terminal
                     domain-containing protein"
                     /protein_id="HSX70228.1"
                     /translation="MNSSIRLDKRDLILAKGSQVMTRRGYHGTGVMEIVQAAGIPKGS
                     FYHYFASKEDFALQALEFLYGPRLTRYAEALGNTALSPSARILGYYRELQAHFARQEQ
                     PEYHCFIGSLSFEMSEVLPAIGAEVERIQQASVDTLRECLEQARAAGELAADEDCENL
                     ATFISNAWQGVLARLKVGRSLQPLEAFIHRLELLLRP"
     gene            7135..>7254
                     /locus_tag="VLF16_04780"
     CDS             7135..>7254
                     /locus_tag="VLF16_04780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014340155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="12-oxophytodienoate reductase"
                     /protein_id="HSX70229.1"
                     /translation="MTAQALFEPFRLGSLELPTRVVMAPMTRSFSPGGVPGAQV"
BASE COUNT         1134 a         2396 c         2522 g         1202 t
ORIGIN      
        1 gtgtagcgct tcatgaaggg gaattcgagg gcccaccagc acaggccgat caccgggacc
       61 cagatcagct cctgcttgag gaagaacttg agcagcggca tgcgctggtt gagcaggtac
      121 tgcagcacca ggatgtccac ccagctctgg tggttgctgg tgaccaggta ggagtggcgc
      181 atgtccaggc cctgcaggcc ttccacgtcc cagcgggtgt cgcggaccag gcgcatccag
      241 aacttgttga agccgatcca gaactcggcg atgccgtgca tcaccttgcg cagcacgcgc
      301 tgagccgggg ggaaaggcag cagcagcttg agcagcgcca cggcgaacag cggccagcag
      361 cagatcaggg tgttgagggc cagcagcagg gcgctgatga ggccgcgcaa gggggcgggc
      421 agaaaatgca gcatgggctc gagaggctcc tggtcagggg gctttctggg tgagccccgt
      481 acggtcgaga tacctgcagc actccctgcg gcaagtcggt ccggcgctta ggttaacgct
      541 tgtacactga acggcaagtg ccagggggga ccgccaggtc attccgccag tccgtgcgcc
      601 gggcgcgcgg attctagcgc aaggctggag acgctgtgat gacgccttgc gcgaagcatc
      661 cctggtactc atggtcagtg tggcaccgct tggtgcgcac agcgcaccct accaggcgcc
      721 gggttcagcg ctcggatgcc ggagccgtag ggtgcgccgt gcgcacctat cgctacatac
      781 acgctgggaa tgcatggcac atccatgacg caaatgtcgt taatgcttcg ccgccgcctg
      841 gatcgcggtg agggcgatgg tgaagacgat gtcgtccacc agggcgccgc gcgacaggtc
      901 gttcaccggc ttgcgcaggc cctgcagcat gggcccgacg ctgacgcaat cggcgctgcg
      961 ctgcaccgcc ttgtaggtgg tgttgccggt gttcaggtcg gggaatacga acaccgtggc
     1021 gcgccccgcc accgggctgt tcggggcctt ctgccggccg acgctggcga tggccgcggc
     1081 gtcgtattgc agtgggccgt cgatcagcag cgccgggttc gcctcgcggg ccaggcgcgt
     1141 ggcctcgcgc accttctcca cctcggcacc gctgccggag tcgccggtgg agtagctgat
     1201 catcgccacc cgcgccggca cgccgaagga ctcggcggag gcggcgctct gcagggcgat
     1261 ctcggccagc tcggtggcgt tggggtcggg gttcaccgcg cagtcgccgt agaccagcac
     1321 ctggtccggc aggagcatga agaacaccga ggacaccagg ttgtagcccg gcgccgtctt
     1381 gatcagctgc agggcggggc gaatggtgtt ggcggtggtg tggatggccc cggagaccag
     1441 gccgtcgacc tgatccagcg ccagcatcat ggtgcccagt accacgctgt cctccagctg
     1501 ggccagggcc atgggcgcgt tgagcccctt gcccttgcgc agctcgacca tcggctcgac
     1561 gtagtgctcg cggatcgcct ccgggtcgag aatttccagc ccctccggca gctcgatgcc
     1621 ctgggccttg gccacggcgt ggacctcttc cggcttggcc agcagcacgc agcgggcgat
     1681 gccacgggcc tggcagatgg cggcggcctg cacggtgcgc ggctcgctgc cctccggcag
     1741 gacgatgcgc ttgttcgccg cctgggcgcg gcgcaccagc tggtagcgga acgccggcgg
     1801 cgacaggcgc agctcgcgcg gagtgccgca gcgctgtttc agccagtcca gatcgatatg
     1861 gccggcgacg aactcggtga ccttctcggc gcgctcgcgg tcgtcgatcg ggatctcctt
     1921 gttcatgcgg ttgaggttgg tcgccgtgtc gtaggagccg gtgctcaccg tcagcaccgg
     1981 cagcccgccc tgcagcgcgg cctggcacag ctccatgatc cgcgcatccg gcgggaagtc
     2041 gctgcacagc agcaggccgg ccaggggaac gccgttcatc gcggccaggc tggcggcgag
     2101 gatgatgtcg tcgcggtcgc ccggggtgac caccagcacg ccgggcttga gcaggtgaac
     2161 ggtgttcggc acggcgcggg cgcagagcac gatcttgttc acccgccgct gttcgtaatc
     2221 gccggcgttg agcacctggg cgccgagcag gtcggccacg tcgcgggtgc gcggggcgtt
     2281 cagctcgtcc tgccagggga tgcagccgag cacgcggaaa tcgccgctgc gcagcagcgg
     2341 agagagtcgg ccgagttcgt cggtgaaggc ctcgacgccc tccgggtggc gcaccttgtt
     2401 gaggatcacg ccgatcatct tcgggtcctt cggcccaccg aacagctggg cctggatctc
     2461 gatgcggtcg gacagctcgg tgatcttctc cggctcgtcg ccctcggggg ccgagaccag
     2521 gatgatctcg gcatccaggc tcttggccag gtgcacgttg acccgcgccg cgtagctggc
     2581 gtgacgggtc ggcaccatgc cctcgacgat cagcacgtcc atgccctcgg cggcctgctg
     2641 gtgcaggctg acgatctcct cgagcagctc gtccagatgg ccgtcgccga gcatccgttc
     2701 gacctgggcc agcggcagcg agcggggcgg cagcaggccg tgggtgcggg cgatcagctc
     2761 gctggagcgc tccgggccgg agtcaccggg atgtggctgg gcgatcggct tgaagaagcc
     2821 gaccttcagc ccggcgcgct gcagggcgcg gaccaggccg aggctgatgg aggtgagacc
     2881 gacgccgaag ccggtggggg cgatgaagaa ggtgtgcatg ggcgttcctt gggcggtcag
     2941 gcggtcagca gggccagggt gtcgagggcg atctgccgtt cctcgttggt cggcaccacc
     3001 agcacccgcg ggtggccgtg ggcctggatg gcgccaccga cgccgcggat gcagcgggcg
     3061 ttggcctcct tgtcgagggc cagattgaac agcttcaggt gggccaccgt cttgctgcgg
     3121 atcaacggcg agttctcgcc gatgccgccg gtgaagatca gcccgtccag ctgcggcagt
     3181 gcgcaactca tggccgccag ggacttggcc aggcggtaac agaacacctc gatggccagg
     3241 gccgcgcccg ggtgaccctg gtcgcgcgcc tgctccagcg cgcgcatgtc gttggacagg
     3301 ccggacaggc cgagcagtcc gctgtccttg ttcagcatgg cgtcgatctt ctccaggctc
     3361 cagcccaggg tgcgcgccag gtggccgtgc aggttggggt cgacgtcgcc gctgcgggtg
     3421 cccatcacca gcccctccag cggggtcagt cccatgctgg tgtcgcggct ctggccgtcg
     3481 acgatggcgc aggtcgaaca gccgttgccc aggtgggcgg acagccagct gctgtcgccg
     3541 tgggacaggc cagccatctc cgccgcgcga cgactgacgt agcggtggct ggtgccgtgg
     3601 aagccgtagc ggcgcacgcc atgctcgcgg tacagcgcct ccggcacggc gtagcggtag
     3661 gcgtgctcgg gcaggctctg gtggaaggcg gtgtcgaaca ccgccacctg ggtgaggttg
     3721 ggaaacagct tgagcgccgc ctcgatgccc agcaggttgg ccgggttgtg cagcggtgcc
     3781 agcggcgcgg tggcgcggat cgcctgcagg ctgtgcgggt cgatgcggca ggcggcggtg
     3841 aactgctcgc cgccgtgcac cacgcggtgg ccaatgccgt gcagcttgcc gccggcggcg
     3901 ccctgcacca gcggcagcaa ctgatgcagc gcggcgcggt ggtcgccgtt gggcagcatc
     3961 aggctgtcct tctcgccgcc gcgctgccag tgcagcacgg catcgtggct gcccaggcgt
     4021 tcggccaggc cgctcagggt gaattgcgag tgggcctcgt tgaccagggc gaacttgatc
     4081 gacgagctgc cgcaattgat gaccagaata ttgcgtgccg gcatgactat tccttagagg
     4141 ctgtttccgt ttcgttcgcg caccagccac aggcgaaggg ctggccgagg aggcgctggc
     4201 gctcgagcgg gtccaggacc caggcccgat tctgccacgg tggcagatgc cgcaaatgct
     4261 gcgtatggcc gcaggacagt tctgccaccc agtggccgtc ctcgtcctgg tggaagccca
     4321 gcaggcgcgt ggtccgtccg tcagtgccgc ggtcgctttc agcgggcgtg gcgagtagac
     4381 ttggccccct tccattctct tgcaaaaggt tttccctcca tgcagatcgc cgccaacaag
     4441 gccgtgtcca tcgactatac cctgaccaac gatgccggtg aggtgatcga cagttccgct
     4501 ggtggcgctc cgctggtgta tctgcacggt gccggcaaca tcatcgtcgg cctggagaag
     4561 gcgctcgagg gcaagcaggc cggtgacgag ctgagcgtgg ccatcgagcc ggccgacgcc
     4621 tacggcgagt acagcgccga gctggtcgcc accctcaacc gcagcatgtt cgaaggcgtc
     4681 gaagagctgg aagtgggcat gcagttccac gcctccggtc cggacggcgg catgcagatc
     4741 gtcaccatcc gcgacatcga gggcgacgac gtgatcgtcg acggcaacca cccgctggcc
     4801 ggccagcgcc tgaacttcca ggtcaaggtg gtcgacgtgc gtgaggccaa tgccgaagag
     4861 atcgcccacg gtcacatcca tggcgaaggc ggtcaccatc actgatcggt gacgcggccg
     4921 agcaatacga cttatggtcg ttccatgccc ggcctcggct gctaagctca gctaaccgaa
     4981 aaaggcgccc gcgggcgcct tttttgtccc gcgctggggc ttccgtcatg cccaaggagt
     5041 cagtcatgag tgcctttcac gatctcaatc tgcgtgcgct ggacggccag gacctgccgc
     5101 tggcgccgta caaggggcag atagtgctgg tggtcaacgt ggcctccaag tgcggcctca
     5161 caccccagta cgccggcctg gaaaagctct atcaggaata ccgcgagcgc ggcttcaccg
     5221 tgctcggcct gccgtgtaac cagttcgccg gccaggagcc gggcggcgaa gacgagatcc
     5281 gcgaattctg cagcctcaac tacggcgtga cctttcccct gggcagcaag ctcgaggtca
     5341 acggccccgg ccgccatccg ctgtatcgcc tgctggcggg cgagggcgcc gagtttcccg
     5401 gcgatatcag ctggaacttc gagaagttcc tggtcggccg cgacggccgc gtgctggcgc
     5461 gcttctcgcc gcgcaccacg ccggacgatc cggcgctggt tcaggccatc gagaaagccc
     5521 tgggctgatt gcgccattcc tgcggccgat ttgcccgccg cgtcttgttc cctcggcgtc
     5581 ccggtagcct aatcggggcc tctgccgagg agacagcgat gaccagcttc acccccgacg
     5641 atctcaaccc cacggcctcg ccacaggcgc tgcgcgcgct gatcgagagc cgtcgcgcgg
     5701 tgcgccgctt cctggccgag ccggtgccgg acgaggtgat ccgcgattgc ctggaactgg
     5761 ccgtgctcgc gcccaattcc tgcaacctgc agccgtggag cttccaggtg gtgcgcgacc
     5821 cggcgctgct ggcgcggctg caccgggtgt gcatgagcca gaacgcggca aaggcgccat
     5881 tgatcatcgc cgtgctggcg cgcccggaca cctggaggca ggcctgcgcc aacgtcgtcg
     5941 actactggcc cgagcccgag gtgccggcgc gcatccgcca tttctacgcc aagactgcgc
     6001 cgttccagta caaccagggt ccgctcgggc tgctaggcct gttcaagcgc caactggtgc
     6061 gcctggcagc gctgcgcaaa ccgctgatgc gcacacccaa cagtcgcgcc gacatgcgtc
     6121 tctgggcggt gaagtccacg gcgctggccg ccgagaacct gatgctggcc ttccagagcc
     6181 acggctacgc cacctgcccg atggagggct tcgacgaggt gcgcctgcgc aaggtgttgg
     6241 atatcccgcg ccgggccatt ccgatcatgc tgctggcggt cgggcgccag ggtgagaagg
     6301 gcgtgtacaa cccgcgcatg cgctttcccc tggaacagca cgtcacctgg ctgtaggtgt
     6361 gcgcgatacc cggcaccgtt tgtctcgcgg tgcgccggca taccgtggcg ctttgtagag
     6421 ctcgatcacc gaaatcaata gtgcttggcg cagcgagacg accggtcata ttctcgccgc
     6481 catgaacagc agtatccgac tcgacaagcg tgacctgatc ctggccaagg gctcgcaggt
     6541 gatgacgcgc cgcggctacc acggcaccgg cgtgatggag atcgtccagg ccgccggcat
     6601 ccccaagggc agcttctacc actacttcgc cagcaaggaa gatttcgccc tgcaggcgct
     6661 ggagttcctc tacggcccgc gtctgacgcg ctacgccgag gccctgggca acacggcgct
     6721 gagccccagc gcgcgtatcc tcggttacta ccgcgagctg caggcgcact tcgcccgcca
     6781 ggaacagccc gagtaccact gcttcatcgg cagcctcagc ttcgagatga gcgaggtgct
     6841 gccggccatc ggcgccgagg tggagcgcat ccagcaggcc tcggtggata ccctgcgcga
     6901 atgcctggag caggcccgtg ccgccggtga gctggcggcc gacgaggact gcgagaacct
     6961 ggcgaccttc atttccaacg cctggcaggg cgtgctggcg cgcctcaagg tcggccgcag
     7021 cctgcagccg ctggaagcct tcattcaccg tctggagctg ctgctgcggc cctgaccgtt
     7081 ttttttgccc atcgacgaga cgaccggtca gctggccggc cccaaggaga atccatgacc
     7141 gcacaagccc tgttcgaacc cttccgcctg ggtagcctgg agctgccgac ccgcgtggtg
     7201 atggcgccga tgacccgttc cttctccccg ggcggcgtac ccggcgccca ggtg
//
LOCUS       DATIHC010000296         2399 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42845, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000296 DATIHC010000000
VERSION     DATIHC010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2399)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2399)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2399
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42845"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..216
                     /locus_tag="VLF16_04785"
     CDS             <1..216
                     /locus_tag="VLF16_04785"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S16 family serine protease"
                     /protein_id="HSX70230.1"
                     /translation="TVIIPEENVRDLKEIPENIKQDLTIKPVKWIDEVLQIALQYAPE
                     PLPDAAPEMVAKDDSRESDSKERISTH"
     gene            352..624
                     /gene="hupB"
                     /locus_tag="VLF16_04790"
     CDS             352..624
                     /gene="hupB"
                     /locus_tag="VLF16_04790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016535194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein HU-beta"
                     /protein_id="HSX70231.1"
                     /translation="MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVL
                     VGFGTFAVKERAARTGRNPQTGKPIKIAAAKIPGFKAGKALKDAVN"
     gene            797..>2399
                     /locus_tag="VLF16_04795"
     CDS             797..>2399
                     /locus_tag="VLF16_04795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HSX70232.1"
                     /translation="MLQNIRDNSQGWIAKTIIGVIVVLMALTGFDAIIQSTSNSRNAA
                     EVNGEEISLDSLNAAVDTQRRQLIQQFGRDFDASLLDDKLLRKTALDALIERRLLLQG
                     AHDAGMGFSDASLDQLILQTPAFQVEGKFDATRFDQVLQQQGMTRMQFRQRLKEDVLV
                     SHLQATLAGSNFVTDTELQAFVGLDKQTRDFASRTIAADAEAVALTDDEVKAYYDQHP
                     DRFMSTEQVVVDYVELKKDSFFDETEASDEELQALYQKEIANLAEQRRGAHILVEVND
                     KLSDEEAKAKLEQAAERLKKGEDFAALAKELSQDPGSASNGGDLGFAGPGVYDPEFEK
                     ALYALKKDEVSAPVRSAFGWHLIKLLDVQSPEVPSFESLKAKLERDVKAQQVEQRFVE
                     AAKQLEEASFEASDLSQPAQELGLQVQTSGAFGREGGEGVAANRQVVQAAFSAEVLED
                     GANSGAIELDPDTTIVLRVKEHKKPALLPLEEVSAGIRETLAGEKAAEAAKAQGESLK
                     QKKPASQRAFSCQGPASVRNARPRPV"
BASE COUNT          510 a          726 c          752 g          411 t
ORIGIN      
        1 accgtgatca ttccggaaga gaatgtccgc gacctcaagg aaattccgga gaatattaag
       61 caggacctga ccattaagcc ggttaaatgg attgacgagg tcctgcaaat tgcgctgcaa
      121 tacgccccgg agcccttgcc cgatgcggct cccgagatgg ttgcaaagga tgactcgcgc
      181 gagtctgatt ccaaggagcg aatcagcacg cattagccgg agggcttcct tgacactttt
      241 ttcgagccct tgttataaag cggctcctat gtgtcggcag gcccttcagc acccgctttg
      301 cttacaccaa acaactaaga aacaactcaa cagaaataag gggacttaag agtgaacaag
      361 tcggaactga ttgatgccat cgccgcatcc gctgatatcc cgaaagctgt tgccggccgt
      421 gcgctggacg cagtaatcga atccgtcact ggcgctctga aggccggtga ttccgtggtg
      481 ctggttggct tcggtacctt cgccgttaaa gagcgcgccg cccgtaccgg ccgcaacccg
      541 cagaccggca agccgatcaa gatcgctgct gccaagatcc ctggcttcaa agctggcaag
      601 gctctgaaag acgccgtcaa ctaagcgtct ctcgggcttg gccctcgccg ggccggggtg
      661 atccgatccg gcacggagcc gctaaggcgc tccaagagtt atgagaaggc gcatcctcgg
      721 atgcgccttt cttttatccg caatcaatac ccacgctgca tggctgttcg ttcagtgcag
      781 acgtttcggg ggaagcatgc tgcagaacat cagggacaat tcccagggct ggatcgccaa
      841 aaccatcatt ggcgtgatcg tcgtgctgat ggcccttacc gggttcgatg ccatcatcca
      901 gtccaccagc aacagccgta atgccgccga ggtcaacggc gaagagatca gcctggacag
      961 cctcaacgcc gcagtggata cgcagcgccg ccagctcatc cagcaattcg gcagggactt
     1021 cgacgcctcg ctgctggacg acaagttgct gcgcaagacc gccctggacg ccctgatcga
     1081 acgcaggctg ctgctgcaag gtgcccacga cgccggcatg ggtttctccg atgcatcgct
     1141 cgatcagctg atcctgcaga cccccgcgtt ccaggttgaa ggcaagttcg atgcgacgcg
     1201 cttcgatcag gtgctgcagc agcagggcat gacccgcatg cagttccgcc agcgcctcaa
     1261 ggaggacgtg ctggtcagtc atctgcaggc cacgctggcc ggcagcaatt tcgtgaccga
     1321 caccgagctg caggccttcg tcggcctgga caagcagacc cgtgacttcg ccagccggac
     1381 catcgcggcc gacgccgagg ccgtcgcgct gacggacgac gaggtgaagg cctactacga
     1441 ccagcacccg gatcgcttca tgagcaccga gcaggtggtg gtcgactacg tcgagctgaa
     1501 gaaggacagc ttcttcgatg agaccgaggc cagcgacgag gagctgcagg cgctgtacca
     1561 gaaggaaatc gccaacctgg ccgagcagcg tcgcggtgcc cacattctgg tggaggtcaa
     1621 cgacaagctg agcgacgagg aggccaaggc caagctggag caggctgccg agcgtctgaa
     1681 gaagggcgaa gatttcgccg cgctggccaa ggagctctcg caggacccgg gttccgccag
     1741 caatggcggt gatctcggct tcgccggccc cggtgtctac gatccggagt tcgagaaggc
     1801 gttgtatgcg ctgaaaaagg acgaagtgtc cgcaccggtg cgcagcgcct tcggctggca
     1861 cctgatcaag ctgctggatg tgcagtcgcc cgaggtgccg agcttcgaga gcctgaaggc
     1921 caagctggag cgtgacgtca aggcgcagca ggtcgagcag cgtttcgtcg aggccgccaa
     1981 gcagctcgag gaagccagct tcgaggcctc cgacctgtcg cagccggcgc aggagctggg
     2041 cctgcaggtg cagaccagcg gtgcctttgg tcgtgagggc ggtgagggcg tcgccgccaa
     2101 tcgccaggtg gtgcaggccg cgttcagcgc cgaggtgctg gaagatggcg ccaacagtgg
     2161 tgccatcgaa ctggacccgg acaccaccat cgtgctgcgc gtcaaggagc acaagaagcc
     2221 ggctctgctg ccgctggagg aggtctccgc cggtatccgc gaaacactgg ccggcgaaaa
     2281 ggcggccgag gcggccaagg cacagggcga aagcctgaaa caaaaaaagc ccgcttctca
     2341 gcgggctttt tcatgtcaag gtccggcgag cgtcagaaac gctcgacctc ggcctgttc
//
LOCUS       DATIHC010000297         1843 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35954, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000297 DATIHC010000000
VERSION     DATIHC010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1843)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1843)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1843
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35954"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..543)
                     /locus_tag="VLF16_04800"
     CDS             complement(<1..543)
                     /locus_tag="VLF16_04800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HSX70233.1"
                     /translation="MWRETKILLIDDNAERRRDLAVILGFLGEDHLACGSNDWRQAVD
                     KLESSREILNVLLGDVSAKGGALELLKQIAAWDENLPVLLIGDPAPTEWAEDLRRRVL
                     ASLEMPPSYNKLLDSLHRAQVYREMYDQARERGRQREPNLFRSLVGTSRAIQQVRQMM
                     QQVADTEASVLILGESGTGKE"
     gene            complement(739..1035)
                     /gene="fliT"
                     /locus_tag="VLF16_04805"
     CDS             complement(739..1035)
                     /gene="fliT"
                     /locus_tag="VLF16_04805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003152328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FliT"
                     /protein_id="HSX70234.1"
                     /translation="MNASVQRLEATGDALRKALANGEWSMVAELDQQCRQAVEEAMVE
                     PLRDEAVLRERMEDLLGLYRQLVEACRSEQERLAGELVQLNQSRQGAKVYQLFG"
     gene            complement(1047..1433)
                     /gene="fliS"
                     /locus_tag="VLF16_04810"
     CDS             complement(1047..1433)
                     /gene="fliS"
                     /locus_tag="VLF16_04810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HSX70235.1"
                     /translation="MYSSSALKQYQQVNTTSQVSDASPHRLIQMLMEGGLTRIAQARG
                     ALTRGQLSLKGELIGKSIAIVGGLRESLNFQQGGDVAANLDRLYEYMISRLVEANVKN
                     EEAPLLEVADLLRNVKEGWDAIAPAA"
     gene            complement(1489..>1843)
                     /gene="fliS"
                     /locus_tag="VLF16_04815"
     CDS             complement(1489..>1843)
                     /gene="fliS"
                     /locus_tag="VLF16_04815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003152327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HSX70236.1"
                     /translation="VKTSQDVSRYRAVQMLLEGALERVAIARLAQQQGDPESKGVAVG
                     TTLSIISILQASLDKQQGGAIADNLDSLYEYMTRRLAHVPLDSTTESLDEVEALLRQI
                     KEGWDGIGDDEAAAH"
BASE COUNT          323 a          569 c          566 g          385 t
ORIGIN      
        1 ctccttgccg gtgccggact cgcccaggat cagcacgctg gcctcggtat cggccacctg
       61 ctgcatcatc tggcgcacct gctggatggc gcggctggta cccaccaggc tgcggaacag
      121 gttgggttcg cgctggcggc cccgctcgcg cgcctggtcg tacatctcgc ggtagacctg
      181 ggcccggtgc agcgagtcga gcagcttgtt gtagctcggc ggcatctcca ggctggccag
      241 cacacggcgg cgcaggtctt cggcccattc ggtgggcgcc ggatcgccga tcagcagcac
      301 cggcagattt tcgtcccagg cagcgatctg tttgagcagc tccagagcac cgcctttggc
      361 ggatacatcg ccgagcagaa cgttgaggat ttcgcgactg gattcgagct tgtcgacggc
      421 ctggcgccag tcgttgctgc cacaggccag atggtcttcg cccaggaaac cgagaatcac
      481 cgccaggtcg cggcggcgct cggcgttatc gtcaatcaac aggattttgg tttcacgcca
      541 catcttgttc tggtctggct cgcggactga ggaatgaaag tcgccaagca gaattccaag
      601 cgacaacggc aattggccat tagtaaagtc aaaatcaagg caagagtcaa ttttatgacg
      661 tgattttctc tctcgggttc aatggccatg ttgaagttaa aaaaaagccc ccggtgcgga
      721 ggcttttttc tcggtttctc aaccgaacaa ctggtagacc ttggcaccct gtcgagactg
      781 gttcagctgt accagctcgc cggcgaggcg ctcctgttca ctgcgacagg cttccaccag
      841 ctgacggtaa aggcccagca gatcttccat ccgctcgcgc agcaccgctt catcgcgcag
      901 cggctccacc atggcctctt caacggcttg acggcactgc tgatccagct cggcgaccat
      961 ggaccactcg ccgttggcca gcgccttgcg cagcgcgtca ccggtggctt ccagacgttg
     1021 cacggatgca ttcatggtgt gttccctcat gcggcaggcg cgatcgcgtc ccagccctct
     1081 tttacattac gcagcagatc ggccacttcg agcaaggggg cttcctcgtt cttgacgttg
     1141 gcctcgacga gacgggagat catgtattcg tagaggcgat ccagattggc cgcgacatcg
     1201 ccgccctgct ggaaattgag actttcgcgc aagccgccga cgatggcaat cgacttgccg
     1261 atcagctcgc ccttgagaga gagctggcca cgggtcagtg caccacgggc ctgggcgatg
     1321 cgagtgaggc ccccttccat gagcatctgg atcagccggt gcggactggc gtcggacacc
     1381 tgggaagtcg tgttgacctg ttggtactgc ttgagggcgg acgatgagta catggaaggc
     1441 tccacctgtt cgttgatacc ttaagtatcg acggcaggtg gaaaaacttt agtgcgcagc
     1501 ggcctcgtcg tcgccgattc catcccagcc ttccttgatc tgacgcagca gcgcctcaac
     1561 ctcgtccagg ctctcggtgg tggaatccag gggcacgtgt gccagcctgc gggtcatgta
     1621 ctcgtagagg ctgtcgaggt tgtcggcgat ggcgccgccc tgctgcttgt cgaggctggc
     1681 ctgcaggatg ctgatgatgc tcagcgtggt ccctaccgcg acgcccttgc tctcggggtc
     1741 gccctgctgc tgcgcgagac gggcgatggc cacgcgctcc agggcgcctt cgagaagcat
     1801 ctgcaccgca cggtagcggc tgacgtcctg actggtcttg acc
//
LOCUS       DATIHC010000298         2228 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_506, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000298 DATIHC010000000
VERSION     DATIHC010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2228)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2228
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_506"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            304..>2228
                     /locus_tag="VLF16_04820"
     CDS             304..>2228
                     /locus_tag="VLF16_04820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019825200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HSX70237.1"
                     /translation="MTELNTAKTHRTTSWSAIWVLPLIALLIGGWLAYRAYNQAGIEV
                     EIFFPSGDGIQVNKTEVIYKGMSIGKVVGMELDDEGDNRGVRVTVEMDKRVEPHLRTN
                     TRFWLVKPSVSLAGITGLETLVSGNYISVSPGKGEKTRKFVALTSQPPMSDTVPGLHL
                     TLKADRLASIKRDSPIFYKQIQVGRVKDYRLADDQTTVEIQIFIQPEFAGLVRKHTRF
                     WNASGVTIDAGLSGVKVRTESLASIVAGGIAFSTPEHRKDSPPTDPAFPFRLYEDFDA
                     AQAGIKVTLKLQDFEGIEAGRTPVMYKGIQLGTVKAIKIDEDLASASVDMTLDPRTED
                     YLTEGAEFWMVKPSISLAGITGLEALVKGNYLALRPGEKGKAPVRDFVARAKAPPLDI
                     NAPGLHLVLFSENLGSLEVGSPILYRQVKVGTIQSFQLSRDRKRVVLGAHIEPIYASL
                     VNSSTRFWNSSGVTLRGGLSTGIEVKSESLQSLLAGGVTFETPDMKAPINHKIQRFTL
                     HTDREEALKEGVAIKIKVPTGDGINPGTPIRYKGIEVGKVETVELTDDLQAVLLNARI
                     TEAAGRIASAGSSFWVVKPELGLVRTANLETLVSGQYLEVSPAAKTGKPEHYFEVLEQ
                     APTVAARENGLRLVLSAA"
BASE COUNT          433 a          700 c          697 g          398 t
ORIGIN      
        1 cccgaactca gtagtgaaac gacgcatcgc cgatggtagt gtggggtttc cccatgtgag
       61 agtaggtcat cgtcaagctc ctatccccaa acccccatcc gagcaatcgg gtgggggttt
      121 ggcttttggg cgctagaaaa cagtagcgag cggcctgccc tgcgaacccg catgcgaacc
      181 ccgcgtgcat gcgttaggct gtgccgtatc gctcgccgcg ttgtctatcc gtatcgatag
      241 cgggcacccg ccttgcctgg gcaaggaagc ctgcagactg ccagaggaat ggagccttcc
      301 tgcatgacgg agctgaatac cgcgaagacc catcgcacca ccagctggtc cgcaatctgg
      361 gtgcttccct tgatagccct gttgattggc ggctggttgg cctatcgcgc ctacaaccag
      421 gccggcatcg aggttgagat cttctttcct tcgggcgacg gcatccaagt caacaagacc
      481 gaagtcatct acaagggcat gtccatcggc aaggttgtgg gcatggagct cgatgacgaa
      541 ggcgacaacc gtggcgtgcg cgttacggtg gagatggaca agcgcgtcga gccgcacctg
      601 cgtacgaata cccgtttctg gctggtgaag ccctcggtgt cgctcgccgg catcaccggc
      661 ctggagacgc tggtctcggg caattacatc tcggtcagcc ccggcaaggg cgagaagacg
      721 cgcaagttcg tcgccctgac atcccaaccg ccgatgtcgg acaccgtacc cggcctccat
      781 ctcaccctca aggctgaccg gctagcgtcc atcaagcgtg acagcccgat cttctacaag
      841 cagatccagg taggccgggt gaaggactac cgcctggctg acgaccagac caccgtcgag
      901 atccaaatct tcatccagcc cgagttcgct ggcctggtgc gcaagcacac gcgcttctgg
      961 aacgccagcg gagtcaccat cgatgcgggg ctctcgggcg ttaaggtacg caccgaatcc
     1021 ctggcgagca tcgtcgccgg cggcatcgcc ttctcgacgc cggagcatcg caaggacagt
     1081 ccgcctaccg atcccgcgtt ccccttccgt ctttatgaag acttcgatgc ggcgcaagcc
     1141 ggtatcaagg tcacgctgaa actgcaggac ttcgaaggca tcgaagccgg tcgcacaccg
     1201 gtcatgtaca aggggatcca gctcggtacg gtgaaggcca tcaagatcga tgaggatctc
     1261 gcttccgcct cggtcgacat gacgctcgat ccgcgtaccg aggattacct gaccgaaggg
     1321 gccgagttct ggatggtcaa gccatccatt tccctggccg gtatcaccgg cctcgaggca
     1381 ctggtgaagg gtaattacct cgcgctgcgt cccggcgaga agggcaaggc gccggtgcgt
     1441 gatttcgtcg cccgagccaa ggcgccgccg ctggacatca acgctcccgg cctgcatctg
     1501 gtgttgttct ccgagaacct gggttcgctg gaggtgggca gccccatcct ctatcgccag
     1561 gtcaaggtcg gcaccatcca gagcttccag ctttcccgcg atcgcaagcg cgtggtgctg
     1621 ggtgcccata tcgagccgat atacgccagc ctggtgaaca gctccacgcg cttctggaac
     1681 tccagtggcg tcaccctgcg gggcgggctg tcgaccggca tcgaggtgaa gagcgaatcg
     1741 ctgcagagcc tgctggccgg cggggtgacg ttcgagacgc cggacatgaa ggctccgatc
     1801 aaccacaaga tccagcgctt caccctgcac accgatcggg aggaggcgct caaggaaggc
     1861 gtggccatca agatcaaggt gccgaccggc gacgggatca acccgggcac gccgattcgc
     1921 tacaagggca tcgaggtggg caaggtcgag accgtcgagc tcaccgatga tctgcaggcg
     1981 gtgctgctca atgcgcgtat caccgaggcc gccggccgca tcgccagtgc gggcagctct
     2041 ttctgggtgg taaagccgga gctcggcctg gtgcgcaccg ccaatctgga aaccctggtc
     2101 agcggtcagt acctggaggt gtcgccggcg gccaagactg gcaagccgga gcattacttc
     2161 gaagtgctgg agcaggcacc caccgtggcc gcgcgggaaa acgggttgcg tctggtactg
     2221 agcgcggc
//
LOCUS       DATIHC010000299         1630 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33533, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000299 DATIHC010000000
VERSION     DATIHC010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1630)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1630)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1630
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33533"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1058
                     /locus_tag="VLF16_04825"
     CDS             <1..1058
                     /locus_tag="VLF16_04825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003464656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HSX70238.1"
                     /translation="DGNDSREAAYFQCANRNKQSLTLDFTQAEGQRLVRELAAQCDVV
                     LENFKVGGLKAYGLDYESLKAVNPRLIYCSITGFGQDGPYAKRAGYDFMIQGLGGLMS
                     LTGKPDGEDGAGPMKVGVALTDILTGLYATVGVLAALNAREHSGQGQYIDVALLDVQV
                     ACLANQAMNYLATGNAPKRLGNAHPNIVPYQDLPTADGDFILAVGNDGQFRKFCEVAG
                     LADIADDERFATNKARVANRAELIPLLRQATVFKTTAEWVALLEAAGVPCGPINDLAQ
                     VFADPQVQARGLRVDMRNGMGSVTQQVASPLRLSATPVEYHLAPPLLGEHTDALLQRL
                     LGLDAGQIAALSRAGVI"
     gene            1290..>1630
                     /locus_tag="VLF16_04830"
     CDS             1290..>1630
                     /locus_tag="VLF16_04830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSX70239.1"
                     /translation="MSNNNNGYPSSLSAWITVTILMIAYVLSFIDRQILNLLVGPIRR
                     DLDITDTQMSLLMGLSFALFYTVCGIPLGRLADTKSRRGLIAIGVLFWSAATAACGMA
                     KLYWQFLICRIG"
BASE COUNT          284 a          571 c          507 g          268 t
ORIGIN      
        1 ccgacggcaa cgacagccgc gaggcggcct atttccagtg cgccaaccgc aacaagcagt
       61 cgctgaccct ggacttcacc caggccgagg gccagcgcct ggtgcgcgag ctggcggcgc
      121 agtgcgacgt ggtgctggag aacttcaagg tcggcggcct taaggcctac ggcctcgact
      181 acgagtcgct gaaggcggtc aatccacggc tgatctattg ctccatcacc ggcttcggtc
      241 aggacggccc gtacgccaag cgcgccggct acgacttcat gatccagggc ttgggcgggc
      301 tgatgagcct gaccggcaag ccggatggcg aggacggcgc cgggccgatg aaggtcggcg
      361 tggcgctgac cgacattctc accggcctgt acgccaccgt cggcgtgctg gccgcgctga
      421 acgcccgcga gcacagcggc cagggccagt acatcgacgt ggcgctgctc gacgtgcagg
      481 tggcctgcct ggccaaccag gcgatgaatt atctggccac cggcaacgcg cccaaacgcc
      541 tgggcaatgc ccacccgaac atcgtgccgt accaggactt gcccaccgcc gatggcgact
      601 tcatcctcgc cgtgggcaac gacgggcagt tccgcaagtt ctgcgaggtc gccgggctcg
      661 ccgacatcgc cgatgacgag cgcttcgcca ccaacaaggc gcgcgtggcc aaccgcgccg
      721 aactgatccc gctgctgcgc caggccacgg tgttcaagac caccgccgag tgggtcgcgc
      781 tgctggaagc ggccggcgtg ccctgcgggc cgatcaacga cctggcccag gtgttcgccg
      841 acccacaggt acaggcccgc ggcctgcgtg tggacatgcg caatggcatg ggcagcgtca
      901 cgcagcaggt ggccagcccg ctgcgcctgt ccgccacgcc agtggaatac cacctggcac
      961 cgcccctgct gggcgagcac accgacgcgc tgctgcaacg gctgctcggg ctggatgctg
     1021 ggcagatcgc ggcgctgagt cgagcgggcg tgatctgagc cgtcgccgct tcgccaataa
     1081 gtcggccagt tcaccgcagc ttcgatggaa atagccgata ttcgttccgg cgctcgcatc
     1141 gagtaaccgt catcagcgag cggacatcaa tctgattcaa ctcgctgata gtaccttcga
     1201 gcgatactaa gccgccgtta gacggaccta agctgggttc atcccgtaac cctatcgagt
     1261 gccaggatgg cgccgcggag ccttgccaca tgtccaacaa caataacggc tacccctcca
     1321 gtctttccgc ctggatcacg gtcaccatcc tgatgatcgc ctacgtcctg tcgttcatcg
     1381 accggcagat cctcaacctg ctcgtcggcc cgatccgtcg cgacctggac atcaccgaca
     1441 cgcagatgag cctgctgatg ggcctgtcgt tcgccctgtt ctacaccgtc tgcggcatcc
     1501 ccctcggccg cctggccgac accaagagcc ggcgcggcct gatcgccatc ggcgtgctgt
     1561 tctggagcgc ggccaccgcc gcctgcggca tggctaagct gtactggcag ttcctcatct
     1621 gccgcatcgg
//
LOCUS       DATIHC010000300         2227 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_23783, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000300 DATIHC010000000
VERSION     DATIHC010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2227
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23783"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1095)
                     /locus_tag="VLF16_04835"
     CDS             complement(<1..1095)
                     /locus_tag="VLF16_04835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003290329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MdtA/MuxA family multidrug efflux RND
                     transporter periplasmic adaptor subunit"
                     /protein_id="HSX70240.1"
                     /translation="MPDSRSTPRFSRRWLIVLAVLIALLVWWLMRGEPEKKAPEFGPW
                     QGPVPVRLTEVERGDFPIEFKALGTVTALNTVNVRSRVDGELVKVLFEEGQRVKAGEL
                     LAQIDPRPYQVALQQAEGVLAQNMAQLKNAEIDLARYQGLYAEDSIAKQTLDTQQALV
                     GQYRGTVKSNQAAVAEARLNLGFTEIRAPIAGRLGLRQVDLGNLVSSADTTPLVVITQ
                     VEPIAVSFTLPEKDLPPVLSRVRDEQRLMVQAWDRGEQQLLAEGELHSLDNQIDVATG
                     TVKLKARFANTGERLFPNQFVNVRLRVETREQGILVPSAAVQFGARGTFVFVVGDDDK
                     VKLRDIKVAASDGAISLIESGVEVGERLVLE"
     gene            complement(1276..1776)
                     /gene="tpx"
                     /locus_tag="VLF16_04840"
     CDS             complement(1276..1776)
                     /gene="tpx"
                     /locus_tag="VLF16_04840"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003460489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA];
                     GO_function: GO:0016684 - oxidoreductase activity, acting
                     on peroxide as acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HSX70241.1"
                     /translation="MAQVTLKGNPIQVEGQLPQAGQQAPAFSLVGKDLSDVTLASLAG
                     KRKVLNIFPSVDTPTCATSVRKFNTEASQLANTVVLCISADLPFAQARFCGAEGLDSV
                     VNLSSMRGASFLKDYGVAIANGPLAGVAARAVVVLDEQDRVLHSELVGEIADEPNYAA
                     ALAALK"
     gene            complement(1874..>2227)
                     /locus_tag="VLF16_04845"
     CDS             complement(1874..>2227)
                     /locus_tag="VLF16_04845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018607088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSX70242.1"
                     /translation="RLRMLMTTGFRCTKRYLEYHDAVLACLPPGPYHVLPLLGVHPQF
                     QGQRLGEQLLGALHDWCAEDSGSQGVVLDTGNPHYLEFYKRQGYEEIGEVAVGPIREH
                     VFFHPNPQPAQQASA"
BASE COUNT          351 a          730 c          766 g          380 t
ORIGIN      
        1 ttcgagcacc agacgttcac cgacctcgac acccgactcg atcaggctga tggcgccatc
       61 gctggcggcg accttgatgt cgcgcagctt caccttgtca tcgtcgccca cgacgaagac
      121 gaaggtgccg cgggcgccga actgcaccgc ggcggacggc acgagaatgc cctgctcgcg
      181 ggtttccacg cgcaggcgca cgttgacgaa ctggttgggg aacagccgct caccggtgtt
      241 ggcgaagcgc gccttgagct tgacggtgcc ggtggcgacg tcgatctggt tgtccaggct
      301 gtgcagctcg ccctcggcca gcagttgctg ctcgccgcgg tcccaggcct gcaccatcag
      361 gcgctgctca tcccggaccc gcgacagcac cggcggcagg tccttttccg gcagggtgaa
      421 gctgacggcg atgggctcga cctgggtgat caccaccagc ggcgtggtgt cggcactgct
      481 caccaggttg ccgaggtcca cctggcgcag gccgaggcgc ccggcgatgg gcgcgcggat
      541 ctcggtgaag cccaggttca gccgcgcctc ggcgaccgcc gcctggttgc ttttcaccgt
      601 gccgcggtac tggccgacca gcgcctgctg ggtgtccagg gtctgcttgg cgatgctgtc
      661 ctcggcgtac aggccctggt agcgggccag gtcgatctcg gcattcttca gctgcgccat
      721 gttctgcgcc agcacgccct cggcctgctg cagcgccacc tggtagggac gcgggtcgat
      781 ctgcgccagc agctcgccgg ccttgacccg ttgaccttcc tcgaacagca ccttgaccag
      841 ctcgccgtcc acgcgcgagc gcacgttcac cgtgttcagc gcggtgacgg tgcccagggc
      901 cttgaactcg atggggaaat caccgcgctc cacctcggtc aggcgcaccg gtaccgggcc
      961 ctgccagggg ccgaactcgg gggccttctt ttcgggttcg ccgcgcatca gccaccagac
     1021 caacagcgcg atcaggacgg ccaggacgat cagccagcga cgggagaatc ggggagtact
     1081 gcgggaatcg ggcatggtgc ggggtcacta tccttcggag ggtgaacgat aagtactccc
     1141 agcaaccagg caaagggtct ttaccgcctt tttacccttc tttgacgtaa caagaagttg
     1201 gaaatttaga aatgacaacg gcctgcaggg tgcaggccgt cggtgaccac ggcgagacgc
     1261 cgtggccgct ttcgatcact tcagcgcggc gagcgcggcg gcgtagttcg gctcgtcggc
     1321 gatctcgccg acgagttcgc tgtgcagcac gcggtcctgc tcgtccagca ccaccacggc
     1381 gcgcgcggcg acgccggcca gcgggccgtt ggcgatggcc acgccgtagt ccttgaggaa
     1441 gctggcaccg cgcatgctgg acaggttgac cacgctgtcc aggccctcgg cgccgcagaa
     1501 gcgcgcctgg gcgaacggca ggtcggcgga gatgcacagc accacggtgt tggccagctg
     1561 gctggcctcg gtgttgaact tgcgtaccga ggtggcgcag gtcggggtgt ccacgctcgg
     1621 gaagatgttc agcaccttgc gcttgccggc caggctggcg agggtcacat cggagagatc
     1681 cttgcccacc aggctgaatg ccggagcctg ctggccggcc tgcggcagct ggccttcgac
     1741 ctggatcggg ttgcccttga gggtgacttg agccatgtgc aaatccttat atcgatggag
     1801 gtgttgccgc cggcgagagc gagcggggaa cgcagtgtac aggcattccg ccccgctctg
     1861 tggcgcgcag gcgtcaggcg ctggcctgct gcgccggctg cggattgggg tggaagaaga
     1921 cgtgctcgcg aatgggcccg accgccacct cgccgatttc ctcgtagccc tggcgtttgt
     1981 agaactccag gtaatgcggg ttgccggtgt ccagcaccac gccctgggag ccggagtcct
     2041 cggcgcacca gtcgtgcagc gcaccgagca gctgttcgcc caggcgctgg ccctgaaact
     2101 gcggatgcac gccgagcagc ggcagcacgt ggtacggccc cggcggcagg caggccagca
     2161 ccgcgtcgtg gtattccagg tagcgcttgg tgcagcgaaa gcccgtggtc atcagcatgc
     2221 gcaagcg
//
LOCUS       DATIHC010000301         3162 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31175, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000301 DATIHC010000000
VERSION     DATIHC010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3162
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31175"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1183)
                     /locus_tag="VLF16_04850"
     CDS             complement(<1..1183)
                     /locus_tag="VLF16_04850"
                     /EC_number="7.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014819089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015662 - P-type ion transporter activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0019829 - ATPase-coupled monoatomic cation
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HSX70243.1"
                     /translation="MSSIHTLDLPIRGMTCASCAGRVERALNKVPGVSGASVNLASER
                     AHVEADAPLAMLVEAVQQAGYRVPIGELELAVEGMTCASCVGRIERALSKVPGVPSVS
                     VNLASERAHVQLLEGTEADALIAAVERAGYRARLLQEAPRVDPRAALRRERLAVIAAL
                     LLAAPLVLPMFAGHWMLPAWVQFLLATPVQFVLGARFYVAAWKAVRAGSGNMDLLVAL
                     GTSAGYGLSLYLWANAGHHAPHLYFEASAVVIALVLLGKYLESRAKRQTSAAIRALEA
                     LRPERATRLVQGHEEEVAIAELRLDDHIVVRPGERFPVDGEVLEGHSQADEALISGES
                     LPVAKALGDTVTGGAINGEGRLIVRTTALGGETVLARIIRLVEDAQAAKAPIHKAVDR
                     VS"
     gene            complement(1273..1713)
                     /locus_tag="VLF16_04855"
     CDS             complement(1273..1713)
                     /locus_tag="VLF16_04855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005770079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70244.1"
                     /translation="MRLPVALLALFCLPAVADDPPSPAPVLPAQPTPAPVTLSPMTLA
                     TPIDYGVLTVSRERLEVSTPCEIGLYLEGNLTARLYQGQSVTLNLPPGQVLVRLGQLG
                     GSHCQPRFEQLRSQTLQITAGQIAKYRIAMDPSGLQLIPAPLNY"
     gene            1882..2079
                     /locus_tag="VLF16_04860"
     CDS             1882..2079
                     /locus_tag="VLF16_04860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008719768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HSX70245.1"
                     /translation="MQILRVSGMSCGHCVRAITQAVQAGDPAAQVQVDLGAGEVRVAS
                     RLDLDQLLAAIREEGYAAEPA"
     gene            complement(2076..2705)
                     /locus_tag="VLF16_04865"
     CDS             complement(2076..2705)
                     /locus_tag="VLF16_04865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008570550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HSX70246.1"
                     /translation="MRRTKEQAEQTRTDILAAAERLFLEKGVAHSTLDQIARAAGVTR
                     GAVYWHFENKAHLFHEMLSQVRLPPEQLTERLSGCDGVDSLLSLRDLCIEAIENLARD
                     EQRRRIFTILLHRCEFTDELRDAEQRHNAFISQFIDLVETLFARPACKRRLLPGVTPR
                     LAARALHALIIGLFTDWTRDPQLFDPLTDTPALIDAQLRGLLREWNPPA"
     gene            2896..>3162
                     /locus_tag="VLF16_04870"
     CDS             2896..>3162
                     /locus_tag="VLF16_04870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HSX70247.1"
                     /translation="MLFSPLLQAADPGQQQKMPPPEVVVEQVKVGSLPLQFEYPARTA
                     GFREVQVRAQVSGILQERTYQEGSQVKQGQVLFRIDPRPYQAALA"
BASE COUNT          486 a         1044 c         1125 g          507 t
ORIGIN      
        1 cgctgaccct gtccaccgcc ttatggatcg gcgccttggc cgcctgggcg tcttccacca
       61 ggcggatgat gcgcgccagc accgtctcgc cgcccagggc cgtggtgcgc acgatcagcc
      121 ggccctcgcc gttgatggcg ccgccagtga ccgtatcgcc caaggccttg gccaccggca
      181 ggctctcgcc gctgatcagc gcctcgtcgg cctggctgtg gccttccagc acttcgccat
      241 ccaccgggaa gcgttcgccg gggcgcacca cgatgtggtc atccaggcgc agctcggcga
      301 tggcgacctc ttcctcgtgg ccctggacca ggcgcgtggc gcgctcgggg cgcagggcct
      361 ccagggcgcg gatggcggcg ctggtctggc gcttggcacg gctttccagg tacttgccaa
      421 gcagcaccag ggcgatgacc acggccgagg cctcgaagta caggtgcggc gcgtggtgcc
      481 cggcgttcgc ccagaggtac aggctgagcc cgtaaccggc gctggtaccc agggcgacca
      541 gcaaatccat attgccactg ccggcacgca cggccttcca ggcggcgaca tagaaacgcg
      601 cgccgagcac gaactgcacc ggtgtggcca gcaggaactg cacccaggcc ggcagcatcc
      661 agtgcccggc gaacatcggc agcaccagcg gcgcggccag cagcagggcg gcgatcaccg
      721 ccaggcgctc gcggcgcagc gcggcccgcg gatcgacccg gggcgcctcc tgcagcaggc
      781 gggcgcgata gccggcgcgt tccaccgcgg cgatcagtgc atccgcctcg gtgccctcca
      841 gcagctgcac atgggcgcgt tcgctggcca ggttgacgct gacgctaggc acccccggca
      901 ccttgctcag cgcccgctcg atgcggccga cgcagctggc gcaggtcatg ccctcgaccg
      961 ccagctccag ctcgccgatg ggcactcgat agccggcctg ttgcacggcc tcgaccagca
     1021 tcgccagcgg ggcgtcggcc tcgacatggg cgcgttcgct ggccaggttg acgctggcgc
     1081 cgctcacgcc gggcaccttg ttcagcgcgc gctcgacccg gccggcgcag ctggcgcagg
     1141 tcatgccgcg gatgggaagg tcgagagtgt ggatgctgct catcggggcg tctccatcgg
     1201 gttcgcccct agaatcaacc ttgacacctg gtcaaggtca agcggcggtt tgccgcggcc
     1261 ccgccgagcg actcagtagt tgagcggcgc cggaatcagc tgcaggccgg acgggtccat
     1321 ggcgatgcgg tacttggcga tctgcccggc ggtgatctgc agggtctggc tgcgcagctg
     1381 ctcgaagcgc ggctggcagt gactgccgcc gagctggccg agacgcacca ggacctggcc
     1441 cggcggcaga tttagagtta ccgactggcc ctggtagaga cgggcggtga ggttgccttc
     1501 caggtaaagg ccgatctcgc agggcgtgga cacttccagg cgctcgcggg acaccgtcag
     1561 cacgccgtag tcgatgggcg tcgccagcgt catcggcgag agcgtgaccg gggccggcgt
     1621 gggctgtgcc ggcaaaaccg gcgcgggcga gggcgggtcg tcggccacgg ccggcaggca
     1681 gaacagggcg agcagggcga ctggcaaacg catgacgaac cctccagttt cggattgatg
     1741 atcgggcctg gccgtggccg tggccatggc cgcgcagcca ttgcagcagc ttggtccagc
     1801 cgggccgcca ggacaagcct tgaccttgcc acggtggcag gctcgagact ggcgctacag
     1861 tcattggaga ggagcgatcc catgcagatt ttgagagttt ccggcatgag ctgtggccac
     1921 tgcgtgcggg ccatcaccca ggcggtgcag gccggcgatc cggccgcgca ggtgcaggtc
     1981 gacctcggcg ccggtgaggt gcgggtggcc agccgcctgg atctggacca gctgttggcg
     2041 gcaatccgtg aagagggcta cgccgccgag cccgcctagg ccggcggatt ccactcgcgc
     2101 agcaggccgc gcagctgggc gtcgatcagc gccggggtgt cggtgagtgg gtcgaacagc
     2161 tgcgggtcgc gggtccagtc ggtgaacagg ccgatgatca acgcatgtag cgcccgcgcc
     2221 gccaggcgcg gagtcacgcc cggcagcagg cggcgcttgc aggccgggcg ggcgaagagg
     2281 gtctccacca ggtcgatgaa ctgactgatg aaggcgttgt gacgctgctc ggcgtcgcgc
     2341 agttcgtcgg tgaattcgca gcggtgcagc aggatggtga agatgcgccg gcgttgctcg
     2401 tcgcgggcca gattctcgat ggcctcgatg cacaggtcgc gcagcgacag caatgagtcc
     2461 accccatcac agcccgacag gcgctctgtc agttgttccg gcggcaggcg cacctggctg
     2521 agcatctcgt gaaacaggtg cgccttgttc tcgaagtgcc agtacacggc gccgcgtgtc
     2581 acgcccgccg cccgggcgat ctggtccagg gtgctgtggg ccacgccctt ctccagaaac
     2641 aaccgttctg cggcggccag gatgtcggtg cgggtctgtt ccgcttgttc tttggttcgg
     2701 cgcatggcgg gctggagtaa tcgggctagg ctctgttctg gggaaatcag tgtaacgaca
     2761 tccgtgccga agtcgccatt tacaaacacg tttgtatgta atgggtatgg cacaccttcg
     2821 gggctttgcc cacttcaaga cgtcatggag atgaccatgt tttctcgccc gctcccattc
     2881 gcgctgtgtg ttggcatgct gttcagcccg ctgctgcagg cggccgatcc cggccagcag
     2941 cagaagatgc cgccgccgga ggtcgtggtc gagcaggtca aggtcgggtc gctgccgctg
     3001 cagttcgaat acccggcgcg caccgcaggc ttccgcgagg tgcaggtgcg ggcccaggtc
     3061 agcggcattc ttcaggagcg cacttatcag gagggcagcc aggtcaagca gggccaggtg
     3121 ctgttccgca tcgacccgcg gccgtaccag gccgccctgg cc
//
LOCUS       DATIHC010000302         2380 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10182, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000302 DATIHC010000000
VERSION     DATIHC010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2380)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2380)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2380
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10182"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..63
                     /locus_tag="VLF16_04875"
     CDS             <1..63
                     /locus_tag="VLF16_04875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator Crp"
                     /protein_id="HSX70248.1"
                     /translation="LEEQGLVHVKGKTMVVFGTR"
     gene            complement(162..998)
                     /gene="trpC"
                     /locus_tag="VLF16_04880"
     CDS             complement(162..998)
                     /gene="trpC"
                     /locus_tag="VLF16_04880"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004425 - indole-3-glycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006568 - tryptophan metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HSX70249.1"
                     /translation="MSIPTVLEKILARKAEEVAERRDRVSFAEVEAQARAADPVRGFA
                     RALQERVAQKQAAVIAEVKKASPSKGVLRENFVPAEIAKSYEAGGAACLSVLTDIDFF
                     QGADEYLQQARAACSLPVIRKDFMIDPYQIVEARALGADCVLLIVSALDDVRMAELAS
                     AAKDVGLDVLVEVHDGDELERALNTLDTPLVGINNRNLHSFEVSLETTLDLLPRIPRD
                     RLVITESGILTRADVELMEINRVYSFLVGEAFMRAEDPGTELKRLFFPDGNRVVLGAD
                     PD"
     gene            complement(995..2041)
                     /gene="trpD"
                     /locus_tag="VLF16_04885"
     CDS             complement(995..2041)
                     /gene="trpD"
                     /locus_tag="VLF16_04885"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004373485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HSX70250.1"
                     /translation="MDIKEALNRVVNQLDLSTAEMQDVMRLIMTGQCTDAQIGAFLMG
                     MRMKSETIDEIVGAATVMRELAAPVSINAERLVDTCGTGGDGMNVFNVSTAAAFVVAA
                     AGGRVAKHGNRAVSGKSGSADLLEAAGVYLNLKPEQVARCVESVGVGFMFAPAHHGAM
                     KHAIGPRRELGLRTIFNMLGPMTNPAGVRHQVIGVFSQALCRPMAEVLQRLGSKHVLV
                     VHAQDGLDEISLAAPTHVAELKDGVVSEYRIQPEDFGIKSQTLMGLTVEDAEDSLALI
                     RDALGRRKTEHGQKAADMIVLNAGAALYAADLATSLKEGVQLAQDALHTGLAWEKLDE
                     LVSFTAVFRVENEG"
     gene            complement(2041..>2380)
                     /locus_tag="VLF16_04890"
     CDS             complement(2041..>2380)
                     /locus_tag="VLF16_04890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249340.1"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HSX70251.1"
                     /translation="GQAFGGDVVRARQVMHGKTSPVFHEDKGAFAGLNMPLTVTRYHS
                     LVVKLETLPECLEVTAWTQHADGSVDEIMGLRHKTLNIEGVQFHPESILTEQGHELFA
                     NFLKQQGGVR"
BASE COUNT          369 a          795 c          794 g          422 t
ORIGIN      
        1 ctggaggaac agggcctggt gcacgtgaag ggcaagacca tggtggtgtt cggcacccgc
       61 tgatcgggct gctgcgcgtc ggcgaagcgt cgtcgcaggc ttgttagccg atgaatgaaa
      121 aagcccgcca atcggcgggc tttttcattc ctgcagcgcg atcagtccgg atcggcgccc
      181 agcaccacgc ggttgccgtc ggggaagaac aggcgtttga gctcggtgcc cgggtcctcg
      241 gcacgcatga acgcctcgcc gaccaggaac gaatagaccc ggttgatctc catcagctcc
      301 acatcggcgc gggtgaggat gccgctctcg gtgatcacca ggcgatcgcg cggaatgcgc
      361 ggcagcaggt cgagggtggt ctccaggctg acttcgaagc tgtgcaggtt gcggttgttg
      421 atgcccacca gcggcgtgtc cagggtgttc agcgcacgct ccagctcgtc gccatcgtgc
      481 acctccacca gcacgtcgag gccgacgtcc ttggcggcgg aggccagctc ggccatgcgc
      541 acgtcatcca gcgccgagac gatcagcagc acgcagtcgg cgcccagggc acgggcctcg
      601 actatctggt acgggtcgat catgaagtcc ttgcggatca ccggcagcga gcaggccgcg
      661 cgggcctgct gcagatactc gtcggcaccc tggaagaagt cgatgtcggt gagcaccgac
      721 aggcaggccg cgccgccggc ctcgtagctc ttggcgatct cggcgggcac gaagttctcg
      781 cgcagcacgc ccttgctcgg cgaggccttc ttcacctcgg cgatcaccgc cgcctgcttc
      841 tgcgccaccc gctcctgcag ggcgcgggcg aagccgcgca ccgggtcggc ggcacgcgcc
      901 tgcgcctcga cctcggcgaa actgacacgg tcacggcgct cggccacttc ctcggccttg
      961 cgggcaagga tcttctccag cacggttgga atgctcaccc ttcgttctcc acacgaaata
     1021 ccgcggtaaa ggacaccagc tcgtccagct tctcccaggc caggccggtg tgcagggcgt
     1081 cctgcgccag ctgtacgcct tccttcagac tagtcgccag atccgccgcg tagagggcgg
     1141 caccggcatt cagcacgatc atgtcggcgg ccttctggcc atgttcggtc ttgcgccggc
     1201 cgagggcgtc gcggatcagc gccagcgaat cctcggcgtc ttccacggtc aggcccatca
     1261 gggtctggct cttgatgccg aagtcctcgg gctgtatgcg gtactcgctg accacgccgt
     1321 ccttcagctc ggcgacatgg gtcggcgcgg ccaggctgat ctcgtccagg ccatcctgcg
     1381 cgtgcaccac cagcacatgc ttgctgccca ggcgctgcag cacttcggcc atgggccggc
     1441 acagggcctg gctgaacacg ccgatcacct gatgcctgac cccggccgga ttggtcatcg
     1501 ggccgagcat gttgaagatg gtgcgcaggc ccagctcgcg acgcgggccg atggcgtgct
     1561 tcatggcgcc gtgatgggcc ggggcgaaca taaagccgac tcccacggac tcaacacagc
     1621 gcgccacctg ttccggcttg aggttcaggt agacgccggc ggcttccagc aggtcggcgc
     1681 tgccgctctt gccggacacg gcgcggttgc cgtgtttggc cacgcgcccg ccagccgcgg
     1741 cgaccacgaa ggcggcggcg gtggagacgt tgaacacgtt catgccgtcg ccaccggtgc
     1801 cgcaggtgtc gaccaggcgc tcggcattga tgcttaccgg cgcggccagc tcgcgcatga
     1861 cggtggcggc gccgacgatc tcgtcgatgg tctcgctctt catgcgcatg cccatgagga
     1921 aggcgccgat ctgcgcgtcg gtgcactggc cggtcatgat caggcgcatc acgtcctgca
     1981 tctcggcggt ggacaggtcc agctggttga ccacccggtt gagggcttcc ttgatgtcca
     2041 tcagcgcact ccgccttgtt gtttgaggaa gttggcgaac agttcgtgac cctgctcggt
     2101 gaggatggat tccgggtgga actgcacgcc ctcgatgttc agggtcttgt ggcgcaggcc
     2161 catgatctcg tccaccgagc cgtccgcatg ctgggtccag gcggtgactt ccaggcactc
     2221 cggcagggtt tccagcttga ccaccaggga atggtagcgg gtcacggtga gcggcatgtt
     2281 gaggccggcg aaggcgccct tgtcctcgtg gaacaccggg ctggtcttgc cgtgcatcac
     2341 ctggcgcgcg cgcaccacgt cgccaccgaa ggcctggccg
//
LOCUS       DATIHC010000303         2253 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_16746, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000303 DATIHC010000000
VERSION     DATIHC010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16746"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..263
                     /locus_tag="VLF16_04895"
     CDS             <1..263
                     /locus_tag="VLF16_04895"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003456158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HSX70252.1"
                     /translation="TCGISTVCVLPEFEICPTLDLRIDYMRPAQPHKDVFGFAECYRV
                     TENVIFTRGYAYQDDPSEPIAHVVGAFMRMGKGAQNISGGAA"
     gene            263..709
                     /locus_tag="VLF16_04900"
     CDS             263..709
                     /locus_tag="VLF16_04900"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HSX70253.1"
                     /translation="MAALNLNTLVREAHEKNDYDTLISLIPYAKLLGIECLRLGDDMV
                     FRLPASKDNIGNPILPALHGGVIAGFMEHAAMLHLLMFMGIPHLPKIIDFSIDYLRAG
                     HYRDTYAQCQVWRQGRRVANVAITAWQTSQSEPIATARAHFKVDEP"
     gene            747..1994
                     /locus_tag="VLF16_04905"
     CDS             747..1994
                     /locus_tag="VLF16_04905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017677165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSX70254.1"
                     /translation="MDALLILGGLLLMVAGMVWLVMLAFSTSLLWGWGSLIPPITLVY
                     VLRHWRTARKAVVLVGLGGIPLVVGMVLMASQDAARLEAILSLRWLKEAPKAPAELDI
                     RLHGELNGQPFSPQYAELVDGVLSLREGEDFFARREVKIRLPQAQKAPVQLDVLPADE
                     GPLPEVEISWLLPEQDLPEARRLDKGYTLHLDLQALPPNKLQGDFHLVLPPSFKTSLS
                     GRLELFADRLRYKDGRLDTQFDSRETLAKVVEDYLQRRFATRVVQLAELPEVSFPSRR
                     VPLTVQARIDGAEQRLPLVLEKVAAGWQVEGDRYPPLPEPRAVEPAKPAVEESAAAEP
                     ARPALDRRERFSLVRLQRNPEQYRGLSMRVSRADGGTVEGRFVGLDGDGSLRISQQLG
                     SGGGRASFSFKPEEIGKIESLEP"
     gene            2089..>2253
                     /locus_tag="VLF16_04910"
     CDS             2089..>2253
                     /locus_tag="VLF16_04910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70255.1"
                     /translation="MSVETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASD
                     AADKLRFEALA"
BASE COUNT          380 a          751 c          736 g          386 t
ORIGIN      
        1 ccacctgcgg catctccacc gtctgcgtgc tgccggagtt cgagatctgc ccgaccctcg
       61 acctgcgcat cgactacatg cgcccggccc agccgcacaa ggatgtattc ggtttcgccg
      121 agtgctaccg cgtcaccgag aacgtgatct tcacccgcgg ctacgcctat caggacgacc
      181 ccagcgagcc cattgcccat gtggtcggtg ccttcatgcg catgggcaag ggcgcccaga
      241 acatttcggg aggtgccgcc tgatggccgc gctcaatctc aatacgctgg tgcgcgaagc
      301 ccacgagaag aacgattacg acaccctgat cagcctgatc ccctacgcca agctgctcgg
      361 catcgaatgc ctgcgcctcg gtgacgacat ggtgttccgc ctgccggcga gcaaggacaa
      421 catcggcaat ccgatcctcc cggcgctcca cggcggggtg atcgccggct tcatggagca
      481 cgcggcgatg ctccatctgc tgatgttcat gggcatcccg catttgccga aaatcatcga
      541 cttctcgata gattacctgc gcgccggtca ttatcgtgac acctacgccc agtgccaggt
      601 ctggcgccag ggccgccggg tggccaacgt cgccatcacc gcctggcaga ccagccagag
      661 cgaacccatc gccacggccc gcgcccattt caaggtcgac gaaccctgat cggcgcgcgc
      721 ggcccgcaca acgacaagga aattgaatgg atgcgttgct gatcctcggc ggcctgctgc
      781 tgatggtggc cggcatggtc tggctggtga tgctggcctt ctccaccagc ctgctgtggg
      841 gctggggcag tctgattccc ccgatcaccc tggtctacgt gttgcgccac tggcgcacgg
      901 cgcgcaaggc cgtggtgctg gtcgggctgg gcggcattcc gctggtggtc ggcatggtgc
      961 tgatggccag tcaggatgca gcgcgcctgg aggccattct cagcctgcgc tggctgaagg
     1021 aagcgccgaa ggcgccggcc gagctggata tccgcctgca cggcgagctc aacggccagc
     1081 cgttttcgcc gcagtacgcg gagctggtcg acggtgtgct cagcctgcgc gagggcgagg
     1141 acttcttcgc ccggcgcgag gtgaagatcc gcctgccgca ggcgcagaag gcaccggtgc
     1201 agctggacgt actgccggcc gacgagggcc cgctgccgga ggtcgagatc agctggctgt
     1261 tgcccgagca ggacctgccc gaggcacggc gcctggacaa gggctatacc ctgcacttgg
     1321 acctgcaggc gctgccgccg aacaagctgc agggcgactt tcacctggtt ctgccgccgt
     1381 ccttcaagac cagcctgagc gggcgcctgg agctgttcgc cgatcgcctg cgctacaagg
     1441 atggccggct ggacacccag ttcgactcgc gcgagaccct ggccaaggtg gtcgaggact
     1501 acctgcagcg ccgcttcgcc acccgcgtgg tgcaactggc cgagctgccg gaggtgagtt
     1561 tcccgtcccg ccgcgtgccg ctgacggtgc aggcgcggat cgatggtgcc gagcagcgcc
     1621 tgccgctggt gctggagaag gtcgccgctg gctggcaggt cgagggcgac cgttatccgc
     1681 ccttgcccga gccgcgcgcg gtggagccgg ccaagccggc cgtggaggag agcgccgcgg
     1741 ccgaaccggc gcggccagcc ctggatcgcc gcgagcgttt ctccctggtg cgcctgcagc
     1801 gcaacccgga acagtatcgc ggcctgagca tgcgcgtgag cagggccgat ggtggcacgg
     1861 tcgaggggcg cttcgtcggc ctcgacggcg acggcagcct gcgcatcagc cagcaactgg
     1921 gtagcggcgg cgggcgggcg agcttcagct tcaagccgga agagatcggc aagatcgaat
     1981 cgttggagcc gtgatttcgc caaggccttg aaatccctct cgaactcccc atctgtatga
     2041 catccgccgc aatggtgcgg cctgtcctgc atgtggagtt cgacgaccat gagtgtggaa
     2101 actcaaaaag aaaccctggg cttccagacc gaggtgaagc agctgcttca cctgatgatc
     2161 cattccttgt attccaacaa ggaaatcttc ctccgtgagc tgatctccaa cgcctccgac
     2221 gccgccgaca aactgcgttt cgaggcgctg gcc
//
LOCUS       DATIHC010000304         2836 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28875, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000304 DATIHC010000000
VERSION     DATIHC010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2836
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28875"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2046
                     /locus_tag="VLF16_04915"
     CDS             <1..2046
                     /locus_tag="VLF16_04915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016253874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhdP family protein"
                     /protein_id="HSX70256.1"
                     /translation="VLIEDDGVDVRVPEGVILDSRVRNVVVAIPKSANGQPPRLALDG
                     ELDSSLPDALKILQEAPIGTADIFAGWQGKGPLSGKLKLDIPLAKGQKPQVQVDFATE
                     GAQLQIATPKLDLSQIKGAFRFNTATGLSAPDIRARALGHAVRGRALAEGARGNARTR
                     IEVSGKAPLAQLTGWLGVTQPLPLKGEIPYTLDLALDGNDSQLRIASDLKGLAVELPP
                     PFAKAAGDARPSTWRMTLQGDERRYWLDYGQVASLALAAPAGQMLQGRGELRLGGEPA
                     RLPSESGLRVTGRIDEMDWNAWQAAAKPYLGLAGDGQNRRFFRGADLAIGRFNGFGTQ
                     VDRLGVKLARAEAGWQLDLSSALLEGRVGLPDAKDAPIVLDLARLSFPPAEPHKADEP
                     EPDKPDLLAAVDPRQIPALDVRIARVMQGDALVGAWALKARPTPRGVRFSDLALELKG
                     LKLGGELGWEGEPESSSSWYKGRIEGGNLADVLSAWGYAPSATSQRFRLDADIRWPGS
                     PAWISLERMSGSLDASLRKGQFVEVQGSASALRVFGLLNFNSIGRRLRLDFSDLLGKG
                     LSYDTTKALLVGQDGVFQTREPLRVVGPSSTLELNGTLDMARDQIDAKLLVTLPVTNN
                     LPLAALIVGAPAIGGALFVADKLLGDKVARFASVQYTVKGPWQNPEISFDKPFEKPR"
     gene            2093..>2836
                     /locus_tag="VLF16_04920"
     CDS             2093..>2836
                     /locus_tag="VLF16_04920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HSX70257.1"
                     /translation="MSLAVIQMVSQDDVLANLAAARRLLQQAAESGARLAVLPENFAA
                     MGRRDLAALGRAEAEGSGPILPWLKGTARDLGLWIVAGTLPLPPDGRPDAKAHACSLL
                     IDHQGQFAARYDKLHLFDVDVADARGRYRESDDFAFGERVVVADTPVGRLGLTVCYDL
                     RFPELYSRLREAGAELISAPAAFTAVTGAAHWQVLTRARAIETQCYVLAAGQGGSHPG
                     GRETFGHSAIIDPWGRVLAEQPAGEAVLLA"
BASE COUNT          420 a         1013 c          989 g          414 t
ORIGIN      
        1 gtgctgattg aggacgacgg ggtcgacgtg cgggtgcccg aaggcgtcat cctcgacagc
       61 cgcgtgcgca acgtggtggt cgccattccc aagtccgcca acggccagcc gcctcgcctg
      121 gccctggacg gcgagctgga cagcagcctg ccggacgcgc tgaagatcct ccaggaggcg
      181 ccgatcggca ccgccgacat cttcgccggc tggcagggca aggggccgct gagcggcaag
      241 ctcaagctgg acattccgct ggccaaggga caaaagcccc aggtgcaggt ggacttcgcc
      301 accgagggcg cgcaactgca gatcgccacg cccaagctgg atctcagcca gatcaagggc
      361 gccttccgct tcaacaccgc caccggtctc agcgctccgg acatccgcgc acgtgccctg
      421 ggccatgcgg tgcggggccg cgcgctggcc gagggcgctc gcggcaacgc ccgcacccgc
      481 atcgaggtca gcggcaaggc gccgctggcg cagctcaccg gctggctggg cgtcacccag
      541 ccgctgccgc tcaagggcga gatcccttac acgctcgacc tggcgctgga tggcaatgac
      601 agccagctgc gcatcgcgtc cgacctcaag ggcctggccg tggagctgcc gccaccgttc
      661 gccaaggcgg ccggcgacgc ccgccccagc acctggcgca tgaccctgca gggcgacgag
      721 cggcgctact ggctggatta cggtcaggtg gccagcctgg cgctggccgc gccagcggga
      781 cagatgctgc aagggcgggg cgaactgcgt ctgggtggcg aaccggccag gctgccctcg
      841 gagtcggggc tgcgcgtgac cggccgtatc gacgagatgg actggaatgc ctggcaggcc
      901 gccgccaagc cttacctggg cctggccggc gatggccaga accggcgctt tttccggggc
      961 gccgatctcg ccattgggcg cttcaatggc ttcggtaccc aggtcgaccg gctcggcgtc
     1021 aagctggctc gcgccgaggc cggctggcag ctcgacctga gcagtgcgtt actggagggg
     1081 cgggtcggtc tgccggatgc caaggatgcg cccatcgtcc tcgacctggc gcgcctgagc
     1141 ttcccgccgg ccgagcccca caaggccgac gagccggaac cggacaagcc ggacctgctg
     1201 gccgccgtcg acccgcggca gattcccgcg ctggatgtgc gtatcgccag ggtgatgcag
     1261 ggcgatgccc tggtcggtgc ctgggcgctc aaggcgcggc cgacgccccg cggcgtgcgc
     1321 ttcagcgatc tggcgctgga gctcaagggt ctcaagctgg gtggcgagct gggttgggag
     1381 ggagaaccgg agtccagtag cagctggtac aaggggcgca tcgagggcgg caatctggcc
     1441 gacgtgctga gcgcctgggg ctatgcgccc agcgccacca gccagcgctt ccgtctcgac
     1501 gccgacatcc gctggccggg ctcgccggcc tggatcagcc tcgagcgaat gtccggcagc
     1561 ctggatgcca gcctgcgcaa gggccagttc gtcgaggtac agggctccgc ttccgccctg
     1621 cgcgtgttcg gcctgctcaa cttcaattcc atcggccggc gcctgcgcct ggacttctcc
     1681 gacctgctcg gcaagggcct cagctacgac accaccaagg ccttgctggt cggccaggac
     1741 ggcgtgtttc agacccgcga gccgttgcgg gtggtcggcc cgtccagcac gctggagctg
     1801 aacggtaccc tggacatggc ccgcgaccag atcgatgcca agctgctggt gaccctgccg
     1861 gtgaccaaca acctgccgct ggccgcgctg atcgtcggcg ccccggccat cggcggcgcg
     1921 ctgttcgtcg ccgacaagct gctcggcgac aaggtcgccc gcttcgccag cgtgcagtac
     1981 acggtcaaag gcccttggca gaatccggag atcagcttcg acaaaccctt cgagaaaccg
     2041 cggtgacctc atgcccggca acatgcgcta gcatgcgggg aaggaggctt gcatgtccct
     2101 cgccgtaatt cagatggtca gccaggacga cgtcctggcc aatctcgccg ccgcgcgtcg
     2161 cctgctgcag caggccgccg agtccggcgc gcgcctcgcc gtgctgccgg aaaatttcgc
     2221 cgccatgggc cgccgcgacc tggcggccct cggtcgcgcc gaggccgagg gcagcggacc
     2281 gatcctgccc tggttgaaag gcaccgcccg cgacctcggc ttgtggatcg tcgccggcac
     2341 ccttccgctg ccaccggacg ggcgtcccga cgccaaggcc catgcctgct cgctgctgat
     2401 cgaccatcag ggacagttcg ccgcgcgcta cgacaagctg cacctgttcg acgtcgacgt
     2461 ggccgatgcc cgcgggcgct accgcgagtc ggacgacttc gccttcggcg agcgcgtggt
     2521 ggtggccgac acgccggtcg gccgactcgg cctgacggtg tgctacgacc tgcgcttccc
     2581 cgagctctac agccggctgc gcgaggccgg tgccgaactg atcagtgccc cggcggcctt
     2641 caccgccgtc accggcgcgg cccactggca ggtgctgacc cgcgctcgcg ccatcgaaac
     2701 ccagtgctac gtgctggcgg cggggcaggg cggcagccat ccgggtggcc gcgagacttt
     2761 cggccactcg gcgatcatcg acccctgggg ccgggtgctc gccgagcagc ccgctggcga
     2821 ggcggtgctg ctggcc
//
LOCUS       DATIHC010000305         1607 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21362, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000305 DATIHC010000000
VERSION     DATIHC010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1607)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1607)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1607
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21362"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..847
                     /locus_tag="VLF16_04925"
     CDS             <1..847
                     /locus_tag="VLF16_04925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acetoacetate decarboxylase (ADC)"
                     /protein_id="HSX70258.1"
                     /translation="YHSNPPLSVIAAEAPDVDLSWFRGLKKTKVDMGFESYSPNFYYR
                     NSRVTAVYTADLDRLRELMPAEVLEQVQPLQVWPGRGLVALTAYAYHYCDNDSYNEIA
                     LSIVTNKPGDANLGPVTLVGQSMSKDFWGYVLKLPVNTELARVRGVVGYNLPKWLTGI
                     GYRETDTSVVFEIADSQTGKLDVTLQTEKLSDLSNEPELVSNSFTNIGHSGELSYGYA
                     VSRQLIHASSGDEDKVKLLLGEGSLSQYIASLDLGEMVKYEYVPDFQSALYAPSPLKT
                     LLAGD"
     gene            950..1312
                     /locus_tag="VLF16_04930"
     CDS             950..1312
                     /locus_tag="VLF16_04930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3302 domain-containing protein"
                     /protein_id="HSX70259.1"
                     /translation="MLDYVALGILFFVGIVLFYGVIAIHDIPYEIAVHRNHPQQDAIH
                     VAGWISLFTLHAIWPFLWIWATLYREDRGWGFSSPPAEDERLHVLEQQLGDLQARLAQ
                     LEATPAAEPVSELPRRED"
     gene            1316..>1607
                     /locus_tag="VLF16_04935"
     CDS             1316..>1607
                     /locus_tag="VLF16_04935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010227121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HSX70260.1"
                     /translation="MDLLLILTYTAICVAIFKIFRIPLNKWTVPTAVLGGIVLIGTLI
                     FLMNYNHPYSEVSRSYFVSTPIVPAVSGQVVEVPVRGHQMLEKGDVLFRIDPT"
BASE COUNT          287 a          522 c          506 g          292 t
ORIGIN      
        1 ctaccactcc aacccgccgc tctcggtgat tgccgccgag gcgccggatg tcgatctgag
       61 ctggttccgc ggcctgaaga agaccaaggt cgacatgggc ttcgagtcct attcgcccaa
      121 cttctattac cgcaacagcc gggtgacggc ggtatacacg gcagacctgg accggctgcg
      181 cgagctgatg cccgccgagg tgctggaaca ggtgcaaccg ctgcaggtct ggcccggacg
      241 cggcctggtc gcgttgacgg cttacgccta ccactactgc gataacgaca gctacaacga
      301 gatcgccctg tccatcgtca ccaacaagcc gggcgacgcc aatctcggcc cggtcacgct
      361 ggtcggccag tcgatgtcga aggacttctg gggctacgtg ctcaagctgc cggtcaatac
      421 cgaactggcc cgggtccgcg gcgtggtggg ttacaacctg cccaagtggc tgaccggcat
      481 cggctaccgc gaaaccgaca cctcggtggt gttcgagatc gccgacagcc agacgggcaa
      541 actcgatgtc accctgcaga ccgagaagct gagcgatctt tcaaacgagc ccgagctggt
      601 cagcaacagc ttcaccaaca tcggccacag cggtgagctg agttacggtt acgcggtatc
      661 gcgccagctg atccatgcct ccagcggcga cgaggacaag gtcaagctgt tgctcggcga
      721 aggcagcctg tcgcagtaca tcgcgtcgct ggacctgggc gaaatggtca agtacgagta
      781 cgtgccggac ttccagagcg cgctgtatgc gccctccccg ctgaaaaccc tgctggccgg
      841 cgactgacca ccggcgcccg cctcccgccc ggtacgtcgg gtacatggca gcgcttcgct
      901 ggcgctgcta gcctgctgcg aaggttggct cgtcactggg gaggctggga tgctggacta
      961 cgtcgcgttg gggattctgt tcttcgttgg catcgtgttg ttctacgggg tgatcgcgat
     1021 tcacgacatc ccgtacgaga tcgcggtgca ccgcaatcat ccgcagcagg atgccatcca
     1081 cgtggcgggc tggatcagcc tgttcacgct gcatgccatc tggccgttcc tgtggatctg
     1141 ggcgacgctc taccgcgagg accggggctg gggtttctcc agtccgcccg cggaagacga
     1201 gcgactgcat gtcctggagc agcagctcgg cgacctgcag gcgcgcctgg cgcaactgga
     1261 ggcgacgcct gcggccgagc cggtttccga actgccgcgg cgggaggact gagccatgga
     1321 cctgttgctc atcctcacct acaccgccat ctgcgtcgcc atcttcaaga tcttcaggat
     1381 cccgctgaac aaatggacgg tgcccaccgc ggtgctcggc ggcatcgtgc tgatcggcac
     1441 gctgatcttc ctgatgaact acaaccaccc ctactccgag gtgtcgcgca gctatttcgt
     1501 cagcacgccg atcgtgccgg cggtcagcgg ccaggtcgtc gaggtgccgg tcaggggcca
     1561 tcagatgctg gagaaaggcg acgtgctgtt ccgcatcgac ccgacgc
//
LOCUS       DATIHC010000306         1677 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19466, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000306 DATIHC010000000
VERSION     DATIHC010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19466"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1213)
                     /locus_tag="VLF16_04940"
     CDS             complement(<1..1213)
                     /locus_tag="VLF16_04940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003457547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme biosynthesis HemY N-terminal
                     domain-containing protein"
                     /protein_id="HSX70261.1"
                     /translation="MIRAVLLLVLVVAAATALGVAVAEHSGYVLIAWKGLRYESSLWV
                     FLLLIALAVLLVWGLRALLRLLLVSGGLVNPWSRRQRGRRQQMAADKGLLDLIEGRWE
                     RAERHLSLAAEGARQPLMYYLGAARAAHRQGRIEQRDALLEKALQRQPQAELAIALTH
                     AELQREQGDLDGALDTLQAMRERHPRHHLVLDQLQRTLVERGDWAALMELLPELRKAK
                     VLEGDTLAALERRVWIARLQGAGERGLDQGELALQPLTQAWQQLSSAQRQDAELLLAY
                     ATQLRALGAQEEAEEVVRKALKQGYDARLIRLYGKLRGRDAARQLQTAEDLLKQHPQD
                     PQLLLALGRLCLQNGLWGKAREYFEISLEFARDPETCAELARLLASQGDAEQSNRLLQ
                     ELLTLQGQRLPE"
     gene            complement(1210..>1677)
                     /locus_tag="VLF16_04945"
     CDS             complement(1210..>1677)
                     /locus_tag="VLF16_04945"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HSX70262.1"
                     /translation="EVQSSVNASDSSRWEELWEELSRYVRIDLHADQDVRPQLAGQSL
                     AQVRLTLALALEQAQWGALNGEQEVYRQALASAGDVLDSYFDRDNQAVQALRKRVEEL
                     SGQPVTTRLPKLDDALGSLQAYLKRREAAELAPEGEAEPGSEPQVEATEEGGQ"
BASE COUNT          239 a          623 c          554 g          261 t
ORIGIN      
        1 actccggcag gcgctggccc tgcagcgtca gcagctcctg cagcaggcga ttgctctgct
       61 cggcgtcgcc ctggctcgcc agcaggcgcg ccaattcggc gcaggtctcc gggtcgcggg
      121 cgaactcgag actgatctcg aaatactcgc gggccttgcc ccacaggccg ttctgcagac
      181 acaggcgacc gagggcgaga agcagctgcg ggtcctgcgg atgctgcttg agcagatcct
      241 cggcggtctg cagctgacgc gccgcatcgc gcccgcgcag ctttccgtag aggcggatca
      301 ggcgcgcgtc gtaaccctgc ttgagggcct tgcgcacgac ctcctcggcc tcctcctggg
      361 cgcccagcgc ccgcagctgt gtggcatagg ccagcagcag ttcggcgtcc tggcgttgtg
      421 ccgaggaaag ctgctgccag gcctgggtca gtggttgcaa ggccagctcg ccctggtcca
      481 gcccacgctc gccggcaccc tgcagacggg cgatccacac ccggcgctcc agcgccgcca
      541 gcgtatcgcc ctccagcacc ttggccttgc gcagctccgg cagcagctcc atcaacgccg
      601 cccagtcgcc gcgctcgacc aatgttcgct gcagctgatc gagcaccagg tgatggcgcg
      661 gatgacgttc gcgcatcgcc tgcagcgtgt ccagcgcgcc gtccaggtcg ccctgctcgc
      721 gttgcagttc ggcatgggtc agggcgatcg ccaactcggc ctggggctgg cgctgcaggg
      781 ccttttccag cagggcgtcg cgctgctcga tgcgaccctg ccggtgggcc gcacgggcgg
      841 cgcctaggta atacatcagc ggctggcgcg cgccttcggc ggccagggaa agatggcgct
      901 cggcgcgctc ccagcgaccc tcgatcaggt ccagcaggcc cttgtcggcg gccatctgct
      961 ggcgccgtcc gcgctggcgg cgcgaccagg gattgaccag cccgccggac accagcagca
     1021 gccgcagcag tgcccgcagc ccccacacca gcagcacggc gagcgcgatc agcagcagga
     1081 acacccacag gctcgactcg tagcgcaggc ccttccaggc gatcagcaca tagccgctgt
     1141 gctcggcgac ggccacgccc agcgcggtgg cggcggccac caccaggacc agaagcagga
     1201 cggcgcggat cattgcccgc cctcctcggt cgcttccacc tggggctcgc tgcccggctc
     1261 ggcttcaccc tcgggtgcca gctccgcggc ttcgcgtcgc ttgaggtagg cctgcaggct
     1321 gcccagtgcg tcgtccagct tcggcaagcg ggtcgtcacc ggctggccgg acaactcctc
     1381 gacgcgtttg cgcagcgcct gcacggcctg gttgtcgcgg tcgaaatagc tgtccagcac
     1441 atcgccagca gacgccaggg cctggcgata aacctcctgc tcgccgttga gcgcgcccca
     1501 ctgagcctgt tccagggcca gcgccagggt caggcgcacc tgcgccaggc tctgcccggc
     1561 cagttgcgga cgcacgtcct ggtcggcgtg caggtcgatg cgcacatagc gcgacagctc
     1621 ctcccagagt tcttcccagc ggctgctgtc gctggcgttg acgctgctct gcacctc
//
LOCUS       DATIHC010000307         3270 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7820, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000307 DATIHC010000000
VERSION     DATIHC010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3270)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3270)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3270
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7820"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..647)
                     /gene="bamC"
                     /locus_tag="VLF16_04950"
     CDS             complement(<1..647)
                     /gene="bamC"
                     /locus_tag="VLF16_04950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010432159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamC"
                     /protein_id="HSX70263.1"
                     /translation="MKRLAGLSALALIISSTSGCGWLWGDEGYFRDRSTDYLDARQSA
                     PMQVPPSVDAKRLDPLLPVPAHVASSSETPQSFEVPRPQALGATGDRASEFSLQKSGD
                     SRWLVAQRTPAEVWPVARSYFENNGFRIAEERPQTGEFVTEWQGSQDLAPSMGRRVAS
                     LMSDEDNQVRVRVRVEPGVVRNTSEVFVVIAEREEGSSADVAFPARSGNAGLEASL"
     gene            complement(665..1543)
                     /gene="dapA"
                     /locus_tag="VLF16_04955"
     CDS             complement(665..1543)
                     /gene="dapA"
                     /locus_tag="VLF16_04955"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003086270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HSX70264.1"
                     /translation="MISGSMVALVTPMDAQGGLDWDALSKLVDFHLQEGTNAIVAVGT
                     TGESATLDVHEHVEVIRRVVDQVAGRIPVIAGTGANSTREAIELTQNAQSVGADACLL
                     VTPYYNKPTQEGLFQHFRHIAEAVPIPQILYNVPGRTACDMLPETVERLSKVANIIGI
                     KEATGDLQRGQEILDRVGADFLVYSGDDATAVELMLMGGKGNISVTANVAPRAMAELC
                     AAAMAGDAATARAINERLMPLHKNLFIESNPIPVKWALNEMGLMQDGIRLPLTWLSPR
                     CHEPLRQAMRQSGVLA"
     gene            1708..2265
                     /locus_tag="VLF16_04960"
     CDS             1708..2265
                     /locus_tag="VLF16_04960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein R"
                     /protein_id="HSX70265.1"
                     /translation="MSTAPVREQFLVISALGANPMELTSVLCRASQENRCGVVSSRLT
                     RHGEYSALVLQVSGSWDALARLETALPALAKRHDFSVNMVRSGALDVRPNALPYVAYV
                     SCAYRPDILNELCQFFSDHRVELENITCDTHQAPQTGGTLLNATLTVTLPPGTQISWL
                     RDQFLDFADALNLDALIEPWRPQNP"
     gene            2276..2749
                     /locus_tag="VLF16_04965"
     CDS             2276..2749
                     /locus_tag="VLF16_04965"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017679082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HSX70266.1"
                     /translation="MAVTLDQSVADFSAAATSGQQVSLSALKGKQVVIYFYPKDSTPG
                     CTTEGLDFRARYADFQAANTQIFGVSMDSLKKHESFKCKQEFPFELISDPEHELCDLF
                     GVYQLKKNYGKEYMGIVRSTFLLDANGVLRQEWRNLRVAGHADAVLAAAQALHKG"
     gene            complement(2804..3043)
                     /locus_tag="VLF16_04970"
     CDS             complement(2804..3043)
                     /locus_tag="VLF16_04970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007963279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HSX70267.1"
                     /translation="MTDIPACDAELDARGLNCPLPLLKAKLELNRLASGAVLKVTATD
                     AGSQRDFRAFARLAGHELLREEEGGGVFHYWLKKA"
     gene            3144..>3270
                     /locus_tag="VLF16_04975"
     CDS             3144..>3270
                     /locus_tag="VLF16_04975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70268.1"
                     /translation="MNFLRPTLLALACLALPVGANDLPSLGDASSSIVSPEQEHRL"
BASE COUNT          571 a         1115 c         1037 g          547 t
ORIGIN      
        1 agcgaggctt ccaggccggc attgccacta cgggccggga aggccacgtc ggcgctgctg
       61 ccctcttcgc gctcggcgat gaccacgaac acctcgctgg tattgcgcac cacaccgggc
      121 tcgacgcgca cacgcacgcg cacctggttg tcctcgtcgc tcatcaggct ggcgacgcga
      181 cgccccatgg acggcgccag atcctggctg ccctgccact cggtaacgaa ttcgccggtc
      241 tgcgggcgct cttcggcgat gcggaaacca ttgttctcga aataggaacg cgccaccggc
      301 cagacttcgg caggcgtgcg ctgagccacc agccagcgcg agtcgccgct cttctgcagg
      361 ctgaattcgc tggcgcggtc gcccgtggca cccagtgcct gcggacgcgg cacctcgaag
      421 ctctgcggag tctcgctgct gctggccaca tgggccggca ccggcagcag cgggtcgagc
      481 cgcttggcgt cgacgctcgg cggcacctgc atgggcgcgc tctgacgcgc gtccaggtag
      541 tcggtggagc ggtcacggaa gtagccttca tcgccccaca gccagccgca gccgctggta
      601 ctggaaatga tcagggcaag ggcagagagt ccagccagtc gcttcatgcg caaatattcc
      661 tcgattaagc caggacgccg gactggcgca tggcctgacg cagcggttcg tgacagcgcg
      721 ggctgagcca ggtcagcggc aggcggatgc cgtcctgcat caggcccatc tcgttcaggg
      781 cccacttcac cggaatcggg ttggactcga tgaacaggtt cttgtgcagc ggcatcagac
      841 gctcattgat ggcgcgggcg gtggcggcat cgccggccat ggcggcggcg cacagctcgg
      901 ccatggcgcg cggggcgacg ttggcggtta ccgagatatt gcccttgccg cccatcagca
      961 tcagctcgac ggcggtggcg tcgtcaccgg aatagacgag gaaatcggcg ccgacgcgat
     1021 caaggatctc ctggccgcgt tgcaggtcgc cggtggcttc cttgatgccg atgatgttgg
     1081 ccaccttgga caggcgctcg acggtttccg gcagcatgtc gcaggcggta cggcccggca
     1141 cgttgtagag gatctgcgga atgggcaccg cctcggcgat gtggcggaag tgctggaaca
     1201 ggccttcctg ggtcggcttg ttgtagtagg gggtcaccag caagcaggca tcggcgccga
     1261 cgctctgggc gttctgggtc agctcgatgg cttcgcgggt gctgttggcg ccggtgccgg
     1321 cgatcaccgg gatgcggccg gcgacctgat cgaccacccg gcggatgact tccacgtgct
     1381 cgtggacatc cagggtggcg gactcgccgg tggtaccgac ggcgacgatg gcattggtgc
     1441 cttcctgcag gtggaagtcg accagcttgc tcagagcgtc ccagtcaaga ccgccttgtg
     1501 cgtccatggg cgtgaccaga gccaccatac tgccggaaat catgcaaccg ctcctgccgg
     1561 aaaaagagag cggtaatggt actggcgcca cctgtgttgc acaagcgaac gcagggtcgc
     1621 cagcattccc ctgagcggcg cttttcgcta cccttccccc tttgctccgc cagccagcgc
     1681 cgagccccat cgtttcagga aagctgcatg tccaccgccc cggttcgcga acaattcctc
     1741 gtcatcagtg ccctcggcgc caaccccatg gagctgacca gcgtgctctg ccgggccagc
     1801 caggaaaacc gctgcggcgt cgtcagcagc cgcctcaccc gccatgggga atacagcgcc
     1861 ctggtgctcc aggtcagcgg cagctgggat gccctcgccc gcctggaaac cgcgctgccg
     1921 gcgctggcca agcgccacga cttcagcgtc aacatggtgc gcagcggcgc cctcgacgtg
     1981 cgccccaatg ccctgcccta tgtggcctat gtcagctgcg cctaccgtcc ggacatcctc
     2041 aacgagctgt gccagttctt cagcgatcat cgcgtggagc tggagaacat cacctgcgac
     2101 acccaccagg caccgcagac cggcggcacg ctgctcaatg ccacgctgac cgtgaccctg
     2161 ccgccgggca cccagatcag ctggctgcgc gaccagttcc tcgacttcgc cgacgcgttg
     2221 aacctggacg cgctgataga accctggcgc ccgcagaacc cgtaaggaag caaccatggc
     2281 cgtgaccctc gaccaatccg tcgccgattt cagcgccgcc gccaccagcg gccagcaggt
     2341 ctcgctgagc gccctcaagg gcaagcaagt ggtgatctac ttctatccca aggacagcac
     2401 gccgggctgc accaccgaag gattggactt tcgcgcccgc tacgccgact tccaggccgc
     2461 caacacccag atttttggcg tatcgatgga cagcctgaag aagcatgaaa gcttcaagtg
     2521 caagcaggag tttcccttcg agctgatcag cgacccggag cacgagctgt gcgacctctt
     2581 cggcgtctat cagctgaaaa agaactacgg caaggagtac atgggcatcg tgcgcagcac
     2641 cttcctgctc gacgccaacg gcgtgctccg ccaggaatgg cgcaacctgc gggttgccgg
     2701 ccatgccgat gcggtcctgg ccgcggcaca ggccctgcac aagggctgag ccgaaagaat
     2761 gaaaaagggc cgcatcagcg gccctttttc attgcggcag gtatcaggcc ttcttcagcc
     2821 agtagtggaa cacgccgccg ccctcttcct cgcgcagcag ttcgtgcccc gccagacggg
     2881 cgaaggcgcg gaagtcccgc tgcgagcccg catcggtggc cgtcaccttg agcaccgcac
     2941 cgctggccag ccgattgagt tccagcttgg ccttgagcag cggcagcggg cagttcaggc
     3001 cgcgggcgtc cagttcggcg tcgcaggcgg gaatatcggt catggcgctc tcctcgaagg
     3061 cgggcaagga taccgcacaa ccctggccag gtggccaagc ggccggctag agtagcggct
     3121 cagtccaagc cagagccccg tgcatgaatt ttctgcgccc caccctgctt gccctcgcct
     3181 gcctggcgct gcccgtcggc gccaacgatc tgccttcgct gggcgacgcc agctcatcca
     3241 tcgtctcacc ggaacaggaa caccgcctcg
//
LOCUS       DATIHC010000308         1710 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31201, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000308 DATIHC010000000
VERSION     DATIHC010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1710)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1710)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1710
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31201"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..712)
                     /locus_tag="VLF16_04980"
     CDS             complement(<1..712)
                     /locus_tag="VLF16_04980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003253293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase family protein"
                     /protein_id="HSX70269.1"
                     /translation="MLTFYSDDHRLHHAQGEMVDGEFKPCFEMPARADHVLARVRERN
                     LGKVLAPRDFGKAPIARIHTGDYLDFLQKAWAGWAAQGNTADFLPGVFPARHLRAKRP
                     DDLYGQYGFHSFDCFAPITAGTWQAVYSSAQIALSGQAEIAAGAHSAFALCRPPGHHA
                     SADVMGGYCYLNNVAIAAQAFLDQGAARVAILDVDYHHGNGTQSIFYDRDDVLVANIH
                     GSPSFEYPHFLGYADETGE"
     gene            891..>1710
                     /gene="glsB"
                     /locus_tag="VLF16_04985"
     CDS             891..>1710
                     /gene="glsB"
                     /locus_tag="VLF16_04985"
                     /EC_number="3.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003242147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004359 - glutaminase activity [Evidence
                     IEA];
                     GO_process: GO:0006541 - glutamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminase B"
                     /protein_id="HSX70270.1"
                     /translation="MQALLNEIVDQVRPLLGRGKVADYIPALAEVPAERLGIAVMGVD
                     GSLYTAGDAAEPFSIQSISKVFSLVQAIQHSGEDIWQRLGHEPSGQPFNSLVQLEFER
                     GRPRNPFINAGALVICDINQSRFAAPALSMRDLARRLSGNPLVVSDAKVAESEYQHRA
                     RNAAAAYLMQAFGNFHNEVETVLRSYFHHCALAMSCVDLARAFGFLANQGLCPRSGDT
                     VLSARQTQQVNAIMATSGLYDEAGNFAYRVGLPGKSGVGGGILAIAPGKAAIAVW"
BASE COUNT          257 a          560 c          613 g          280 t
ORIGIN      
        1 cctctcctgt ttcgtcggcg tagccgagga agtgcgggta ctcgaagctc gggctgccgt
       61 ggatgttagc caccagcacg tcgtcgcggt cgtagaagat cgactgggtg ccgttgccgt
      121 ggtgatagtc gacgtcgagg atcgccacgc gtgcggcgcc ctggtcgagg aaggcctggg
      181 cggcgatggc cacgttgttc aggtagcagt agccgcccat cacgtcggcg ctggcgtggt
      241 ggcccggtgg gcggcacagg gcgaaggcgc tgtgggcgcc ggcggcgatc tcggcctggc
      301 cgctcagggc gatctgcgcc gagctgtaca cggcctgcca ggtaccggcg gtgatcggcg
      361 cgaagcagtc gaagctatgg aagccgtact ggccgtagag gtcgtccggt cgcttggcgc
      421 gcagatggcg ggccgggaac acgccgggca ggaagtcggc cgtgttgccc tgggcagccc
      481 agccggccca ggccttctgc aggaagtcca ggtagtcgcc ggtgtggatg cgggcgatcg
      541 gcgccttgcc gaaatcccgt ggcgccagca ctttgccgag gttgcgctcg cgcacccgcg
      601 ccagcacgtg gtcggcgcgc gccggcatct cgaagcaggg cttgaattcg ccgtcgacca
      661 tctcgccctg ggcgtggtgc aggcggtggt cgtcgctgta gaaggtcagc atcttgttgt
      721 tctcctcgag ggggctggcg gcattgttgg cgcgggtggc gggtcgggaa acgataacgc
      781 cggccaacaa agggataaat ccggccaact tcgacgggct gtgcccgcgg cgtgatggcg
      841 cgcgggggcc gagcgtctat ttcggcaccc gtacacgcaa gaggccgaac atgcaggcgc
      901 tgttgaacga gattgtggac caggtgcgcc cgctgctggg ccgcggcaag gtggccgact
      961 acatcccggc tttggccgag gtaccggccg agcgcctggg catcgccgtg atgggggtgg
     1021 acggcagcct gtacaccgcc ggcgatgcgg ccgagccgtt ctcgatccag agcatctcca
     1081 aggtgttcag cctggtgcag gccatccagc attccggcga ggacatctgg cagcgcctcg
     1141 gccacgagcc atccggccag ccattcaact cgctggtgca gctggagttc gagcgcggtc
     1201 gcccgcgcaa ccccttcatc aacgccggcg ccctggtgat ctgcgacatc aaccagtcgc
     1261 gcttcgccgc cccggcgctg tccatgcgtg acctggctag gcgcctgtcc ggtaatccgc
     1321 tggtggtgtc ggacgccaag gtcgccgagt cggaatacca gcaccgcgcg cgcaacgccg
     1381 ccgcggccta cctgatgcag gccttcggca acttccacaa cgaggtcgag acggtgctgc
     1441 gcagctactt ccaccactgc gccctggcca tgagctgcgt cgacctggcc cgtgccttcg
     1501 gcttcctggc caaccagggc ctgtgcccgc gcagcggcga taccgtgctg agcgcgcggc
     1561 agacccaaca ggtcaacgcc atcatggcca ccagcggcct gtacgacgag gccggcaact
     1621 tcgcctaccg cgtcggcctg ccgggcaaga gcggcgtcgg cggcggcatc ctggccatcg
     1681 cgccgggcaa agctgcgatc gcggtctggt
//
LOCUS       DATIHC010000309         3582 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37795, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000309 DATIHC010000000
VERSION     DATIHC010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3582
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37795"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..191)
                     /locus_tag="VLF16_04990"
     CDS             complement(<1..191)
                     /locus_tag="VLF16_04990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009619782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HSX70271.1"
                     /translation="MELYSSLDMAFVSQVLLVIAATVIGFGLLRFLIGSLRKRLADGT
                     SRWARYASAIAHRTSNLLL"
     gene            complement(326..1348)
                     /gene="hemH"
                     /locus_tag="VLF16_04995"
     CDS             complement(326..1348)
                     /gene="hemH"
                     /locus_tag="VLF16_04995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HSX70272.1"
                     /translation="MTDHALLLINLGSPASTEVPDVRRYLNQFLMDPYVIDLPWPVRR
                     LLVSLILIKRPAESAHAYASIWWDEGSPLIALSRRLQQAMVPHWPHGPVELAMRYGEP
                     SIAGVLTRLASQGVRQVTLAPLYPQFADSTTTTALEEVRRVAREQNLPLRFATLQPFY
                     DQPEYLDALVESARPHLQQDYDHLLLSFHGLPERHLHKLDPSGHCLKGADCCKTASPQ
                     VLARCYRAQCLRSAELFAERAGVPAGKWSVSFQSRLGRAKWIEPYTEARLDELGKAGA
                     KKLLVMCPAFVADCIETLEEIGQRGQEQFREAGGEELVLVPCLNDHPRWAEALKTLCE
                     RAPQQL"
     gene            complement(1345..2250)
                     /locus_tag="VLF16_05000"
     CDS             complement(1345..2250)
                     /locus_tag="VLF16_05000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019693618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HSX70273.1"
                     /translation="MHILLTGGTGLIGRALCRHWLPQGHRLTVWSRTPEKVAERCGAG
                     VRGIGRLEDYGDGPLDAVINLAGAPVADRPWTHKRKALLWASRITLTEQLLAWLESRD
                     ARPQVLISGSAVGWYGDGGERELQEDSPPVVEDFAAQLCGAWEETAQRAEALGLRVVL
                     LRTRLVLARDGGFLKRLLPPFRLGLGGPIGNGRQWMPWIHLQDQIGLIDFLLQREDAS
                     GPYNACAPQPVRNRAFAQALGWALHRPALLPLPGPLLKLGLGELSGLLLGGQKAIPQR
                     ALAAGYVFRFTDIDSALADLFKDTT"
     gene            2457..3443
                     /locus_tag="VLF16_05005"
     CDS             2457..3443
                     /locus_tag="VLF16_05005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007905831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HSX70274.1"
                     /translation="MNAPIAIIGTGLAGLSAAQALHAAGLEVELFDKSRGSGGRMASK
                     RSDAGALDLGAQYFTARDRRFVEVVQQWQARGWVAEWDPQLYHYNQNGLLPSPDEQVR
                     WVGTPRMSAISRALLGALPVHFACRITEVFRGEQHWGLQDADGNSHGPYSSVIVATPA
                     PQATNLLAAAPKLAGAAASVIMEPTWAVALGFSTPLETAVQGCFVQGGALDWLARNRS
                     KPGRDGGCDTWVLHATSAWSRQHLDLPKEAVIEQLHGAFAELIGCALPAPAFSLAHRW
                     LYARPASAHEWGALADADLGLYACGDWCLSGRVEGAWLSGQEAARRLLEHRQ"
     gene            3440..>3582
                     /locus_tag="VLF16_05010"
     CDS             3440..>3582
                     /locus_tag="VLF16_05010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003246969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02450 family Trp-rich protein"
                     /protein_id="HSX70275.1"
                     /translation="MTPTRLNPRKLLLSKWTARAPQNRERHFLVTELHHHDDGRLLEV
                     DLQA"
BASE COUNT          549 a         1269 c         1246 g          518 t
ORIGIN      
        1 aacagcagca ggttgctggt tctgtgggcg atggccgagg cgtaacgggc ccagcggctg
       61 gtgccgtcgg ccaggcgctt gcgcagcgag ccgatcagaa accgcagcag tccgaagccg
      121 atgacggtcg ccgcaatcac cagcagcacc tggctgacga acgccatgtc gaggctggaa
      181 tacaactcca tcgggtgtct cccttgttgg ctaggcacga gtcatttttg gcgggcctgg
      241 ccgggagaag ttcacgggag ttggccgcgg gcgcgcatcg ttgcgcgggc ccgcacatgg
      301 aaacggggcc tcggccccgt ctcgttcaca gctgttgcgg cgctcgctcg cagagtgtct
      361 tcagcgcctc ggcccaacgc gggtggtcgt tcaggcacgg caccagcacc agctcctcgc
      421 cgccggcctc gcggaactgc tcctggccgc gctggccgat ctcctccagg gtctcgatgc
      481 agtcggcgac gaaggccggg cacatcacca gcagcttctt cgccccggcc ttgcccagtt
      541 cgtccaggcg tgcctcggtg tagggctcga tccatttggc gcggcccagg cgcgactgaa
      601 acgacaccga ccacttgccc gccggcaccc cggcgcgctc ggcgaacagc tcggcgctgc
      661 gcaggcactg ggcgcggtag cagcgggcca gcacctgcgg cgaggcggtc ttgcagcaat
      721 cggcgccctt caggcagtgg ccgctggggt cgagcttgtg caagtgccgc tcgggcaggc
      781 cgtgaaaact cagcagcagg tgatcgtagt cctgctgcag atggggcctg gcgctctcga
      841 ccagggcatc cagatattcg ggctggtcgt agaagggctg cagggtggcg aagcgcagcg
      901 gcaggttctg ctcgcgcgcc acccggcgaa cttcttccag cgcggtggtg gtggtgctgt
      961 cggcgaactg cgggtaaagc ggcgccagcg tcacctggcg cacaccctgg gatgccaggc
     1021 gcgtgagcac gccggcgatg gacggctcgc cgtagcgcat ggccagctcc accgggccgt
     1081 gcggccagtg cggcaccatt gcctgctgca ggcggcggct gagggcgatc agcggcgagc
     1141 cctcgtccca ccagatcgac gcgtaggcgt gagccgactc ggccgggcgc ttgatcagga
     1201 tcagcgacac cagcaggcgg cggaccggcc acggcaggtc gatcacgtag gggtccatga
     1261 ggaactggtt gaggtagcga cgcacgtcgg gaacctccgt ggaggccggc gaacccaggt
     1321 tgatcaacag cagggcatgg tcggtcatgt ggtgtccttg aacaggtcgg ccagggccga
     1381 gtcgatgtcg gtgaaacgga atacgtagcc ggcggccagc gcgcgttgcg gtatcgcctt
     1441 ctgcccgccg agcagcagcc cggacagctc gcccaggccc agcttcaaca gcggccccgg
     1501 cagcggcagc agcgcgggcc ggtgcagcgc ccagcccagc gcctgggcga aggcccggtt
     1561 gcggaccggc tgcggcgcgc aggcattata gggaccgctg gcgtcttccc gctgcaagag
     1621 aaaatcgatc aggccgattt ggtcctgcag atgaatccag ggcatccatt gccgaccgtt
     1681 accgatcggc ccgcccaggc ccaggcggaa cggcggcagc aagcgcttga gaaagccgcc
     1741 gtccctggcc agcaccagcc tggtgcgcag cagcaccacg cgcaggccca gcgcctcggc
     1801 gcgctgggcg gtctcctccc aggcgccgca cagctgggcg gcgaagtcct cgaccaccgg
     1861 cgggctgtcc tcctgcagtt cgcgctcgcc accgtcgcca taccagccta cggcggaacc
     1921 ggagatcagc acctgcggcc tggcgtcgcg gctctccagc caggccagca gctgttcggt
     1981 gagcgtgatg cggctggccc acagcagcgc cttgcgcttg tgcgtccagg ggcggtcggc
     2041 gacgggcgcg ccggccaggt tgatcaccgc gtcgagcggg ccgtcgccat agtcctcgag
     2101 ccggccgatg ccgcgcacgc ccgcgccgca gcgctcggcg accttttccg gcgtgcggct
     2161 ccacacggtc agccggtggc cctgcggcaa ccagtggcgg cagagcgcac gaccgatcag
     2221 ccccgtaccg ccggtcagca atatgtgcat ggcattttcc tcgcgtgggg ttctccccct
     2281 agtctgaatc atggcggtgc ggcgtgcctt tttccgcccg ggccgccgtc ccagtttcga
     2341 cacgctcgcg ccgagcgcga gacgggtaca accaatgttc gtccacccgt gtccaacctg
     2401 tagccggcag tgatatcgct ccgagaagcg actggctccg ggaaacgagg tccatcatga
     2461 acgcacccat cgcgattatc ggtaccggcc tggcgggcct ctccgccgcc caggccctgc
     2521 atgcggcagg gctggaggtc gagctgttcg acaagagccg cggcagcggc ggacgcatgg
     2581 ccagcaagcg cagcgacgcc ggcgcgcttg acctcggcgc ccagtacttc accgcccgcg
     2641 accgccgctt cgtcgaggtg gtccagcaat ggcaggcccg cggctgggtc gccgagtggg
     2701 acccgcagct ctaccactac aaccagaacg gcctgctgcc ctcgccggac gagcaggtgc
     2761 gctgggtcgg cacgccgcgc atgagcgcca tcagccgcgc cctgctcggc gccctgccgg
     2821 tgcacttcgc ctgccgcatc accgaggtgt tccgcggcga gcagcactgg ggcctgcagg
     2881 atgccgacgg caacagccac ggcccctaca gcagcgtgat cgtcgccacc ccggcgccgc
     2941 aggccaccaa cctgctggcc gccgcaccga agctggccgg cgccgccgcc agcgtgatca
     3001 tggaaccgac ctgggccgtg gccctgggct tctccactcc cctggagacg gccgtacaag
     3061 gctgcttcgt gcagggcggc gcgctcgact ggctggcccg caaccgcagc aagccgggcc
     3121 gcgacggcgg ttgcgacacc tgggtactgc atgccaccag tgcctggagc cggcaacacc
     3181 tggacctgcc caaggaggcg gtgatcgagc agctgcacgg cgccttcgcc gaactgatcg
     3241 gctgcgccct gcccgccccg gccttcagcc tggcccaccg ctggctctac gcccgcccgg
     3301 ccagcgccca cgagtggggc gcgctggcgg atgccgacct gggcctgtac gcctgcggcg
     3361 actggtgcct gtccggccgg gtggaaggcg cctggctcag cggccaggag gcggcgcggc
     3421 gcctgctgga gcaccgtcag tgacgccgac gcggctcaac ccgcgcaagc tgctgctgtc
     3481 gaagtggacg gcgcgcgccc cgcagaaccg cgagcgtcac ttcctggtga ccgaactgca
     3541 ccatcatgac gatggccggc tgctggaggt cgacctgcag gc
//
LOCUS       DATIHC010000310         4284 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_44743, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000310 DATIHC010000000
VERSION     DATIHC010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4284)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4284)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4284
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44743"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..334)
                     /locus_tag="VLF16_05015"
     CDS             complement(<1..334)
                     /locus_tag="VLF16_05015"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007161262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HSX70276.1"
                     /translation="MSDAPVGKQSNFSRLLGIRILRAENGESELRMDMQEQMLNLHGR
                     MHGGALYSLIDTALGQASHSLFGGEAGSMTLECKVNYIRGVESGEVVCHARVLNGGRK
                     VHVLEAKVE"
     gene            complement(338..2671)
                     /locus_tag="VLF16_05020"
     CDS             complement(338..2671)
                     /locus_tag="VLF16_05020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011911516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003729 - mRNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Tex family protein"
                     /protein_id="HSX70277.1"
                     /translation="MDSINKRIAAELGVLPQQVAAAVALLDEGSTVPFIARYRKEVTG
                     SLDDTQLRHLEERLRYLREMDERRAAILASIEEQGKLTPELKREIDEADTKTRLEDLY
                     LPYKQKRRTKGQIALEAGLGELADGLFNDPSLNPEAEAARFVDAEKGFADVKAALEGA
                     KYILMERFAEDASLLDTLRSFLKNESTLSARVVAGKEAEGAKFSDYFEHDEALKGVPS
                     HRALAIFRGRNEGILGASLKVGDEAPGTLHPCELMIAERFGIEQRGRAADKWLGEVVR
                     WTWKVKLYTHLETDLLGELREKAEDEAITVFARNLHDLLLAAPAGPRATLALDPGLRT
                     GCKVAVVDATGKVLETATVYPHAPRNDWDGTLAILAKLCAKHAVDLISIGNGTASRET
                     DKLAIDLIKKLPALKLTKVMVSEAGASVYSASELAAREFPDMDVSLRGAVSIARRLQD
                     PLAELVKIDPKSIGVGQYQHDVSQLKLARSLDAVVEDCVNAVGVDVNTASAALLARIS
                     GLNSTLAQNIVQFRDANGAFKSRSDLKNVPRLGEKTFEQAAGFLRVMNGDNPLDASAV
                     HPETYPLVQRIAADTGRDVRSLLGDSSILRSLDPKRFTDETFGLPTVTDILKELDKPG
                     RDPRPEFKTAEFQEGVESLKDLQPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALS
                     EKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLTMRMSDTPGEKVDGPRGGARGNGGQ
                     NRGGNQPRSERHSSQDKPAPANAAMASLFANAKQLRK"
     gene            2846..3565
                     /gene="ompR"
                     /locus_tag="VLF16_05025"
     CDS             2846..3565
                     /gene="ompR"
                     /locus_tag="VLF16_05025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator OmpR"
                     /protein_id="HSX70278.1"
                     /translation="MSTEGEKILIVDDDPGLRRLLERFLSEQGYRVRAVENVEQMDRL
                     LARELFQLLVLDLMLPGEDGLSACRRLREANNQMPIIMLTAKGDEASRIQGLEGGADD
                     YLAKPFNPRELLARIKAVLRRQAPVVPGAPASADETVSFGDYELSLATRELKRGEEVH
                     MLTTGEFAVLKALVQHAREPLTRDKLMNLARGREWDALERSIDVQISRLRRLIEPDPS
                     KPRYIQTVWGVGYVFVPDGSK"
     gene            3579..4004
                     /locus_tag="VLF16_05030"
     CDS             3579..4004
                     /locus_tag="VLF16_05030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70279.1"
                     /translation="MPLIRGLQVLLLTGLSSLVLLALYGLGHELALQQGRPLRGGVAW
                     GLLAGALQLCWFPLLMLLQNTGALLWPARRLQLALGAMALFVLPLLVLAPPWADWSHT
                     HRSAYLLFCAAMGIALSYAGQSVLPHWCARRSGDRYMAT"
     gene            4005..>4284
                     /locus_tag="VLF16_05035"
     CDS             4005..>4284
                     /locus_tag="VLF16_05035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007925244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="HSX70280.1"
                     /translation="MKTPRWFPQSFFARTLWLVLVVVLFSKALTLVYLMMNEDMLVDR
                     QYSHGAALTLRAYWAADPEDRAQIAEAATLTRVAREQVPATEQHWPYSE"
BASE COUNT          622 a         1399 c         1489 g          774 t
ORIGIN      
        1 gttccacctt ggcctccagc acatgcacct tgcgcccgcc gttgagcacg cgggcgtggc
       61 agaccacctc gccggactcg acgccgcgga tgtagttgac cttgcactcc agggtcatgc
      121 tgccggcctc gccgccgaac aggctgtggc tggcctggcc gagggcggtg tcgatcagcg
      181 agtagagcgc gccgccgtgc atgcgcccgt gcaggttgag catctgctcc tgcatgtcca
      241 tgcgcagctc ggactcaccg ttctcggcgc gcaggatgcg gatgccgagc aggcggctga
      301 agttgctttg cttgccgacg ggtgcgtcac tcatggttca tttcctcagc tgcttggcgt
      361 tggcgaacag cgaggccatg gccgcgttgg ccggcgccgg cttgtcctgg ctggagtggc
      421 gttcgctgcg tggctgattg ccgccgcggt tctgtccacc gttgccgcga gcaccgccgc
      481 gcgggccatc gaccttctcg ccaggggtgt cgctcatgcg catggtcagg ccgacgcggt
      541 tgcgcggaat gtccacttcc atgaccttca ccttgacgat atcgccggcc ttgacgacct
      601 cgtaggggtc tttgacgaac ttctccgaca gggccgagat gtgtaccagg ccgtcctggt
      661 gtacgccgat atcgacgaag gcgccgaagt tggtgacgtt ggtcaccacg ccttcgagga
      721 tcatgcccgg ctgcaggtcc ttgaggctct cgacgccctc ctggaactcg gcggtcttga
      781 actcggggcg cgggtcgcgg ccgggcttgt ccagttcctt gaggatgtcg gtgacggtcg
      841 gcaggccgaa ggtttcgtcg gtgaaacgct tgggatcgag actgcgcagg atgctggagt
      901 cgcccagcag cgagcgcacg tcgcggccgg tgtcggcggc gatgcgctgc accagcggat
      961 aggtctccgg gtgcacggcg gaggcgtcca gcgggttgtc gccgttcatc acgcgcagga
     1021 agccggcggc ctgctcgaag gtcttctcgc ccaggcgcgg cacgttcttc aggtcgctgc
     1081 ggctcttgaa ggcgccattg gcatcgcgga attgcacgat gttctgcgcc agggtgctgt
     1141 tgaggccgga gatgcgcgcc agcagagcag cggaggcggt gttcacatcc acgccgacgg
     1201 cgttcacgca gtcctcgacc accgcgtcca gcgagcgcgc cagcttcagc tgcgacacgt
     1261 cgtgctggta ttggccgacg ccgatggatt tcgggtcgat cttcaccagc tcggccagcg
     1321 ggtcctgcag gcggcgggcg atgctgactg cgccgcgcag cgacacatcc atgtccggga
     1381 attcgcgggc ggccagctcg gaggcggagt acaccgaggc gccggcctcg gagaccatca
     1441 ccttggtcag cttgagcgcc ggcagcttct tgatcaggtc gatggccagc ttgtcggtct
     1501 cgcggctggc ggtgccgttg ccgatcgaga tcaggtccac cgcgtgcttg gcgcacagct
     1561 tggcgaggat ggccagggtg ccgtcccagt cgttgcgcgg cgcgtgcggg tagacggtgg
     1621 cggtttccag caccttgccg gtggcgtcga ctaccgccac cttgcagccg gtgcgcaggc
     1681 ccgggtccag cgccagggtg gcgcgcggac cggccggggc ggccagcagc aggtcgtgca
     1741 ggttgcgggc gaacacggtg atcgcctcgt cctcggcctt ctcgcgcagc tcgccgagca
     1801 ggtcggtttc caggtgggtg tagagcttga ccttccaggt ccagcgcacc acctcgccca
     1861 gccacttgtc ggcggcgcgg ccgcgctgct cgatgccgaa gcgctcggcg atcatcagct
     1921 cgcacgggtg cagggtgccc ggcgcttcgt cgccgacctt gaggctggca ccgaggatgc
     1981 cttcgttgcg gccgcggaag atcgccagtg cacggtgcga cggcacgccc ttgagcgcct
     2041 catcgtgctc gaagtagtcg ctgaacttgg cgccttcggc ctctttgccg gcgaccacgc
     2101 gggcgctgag ggtggattcg ttcttcagga aggaacgcag cgtgtcgagc aggctggcgt
     2161 cctcggcgaa gcgctccatg aggatgtact tggcgccttc cagcgcggcc ttcacatcgg
     2221 cgaagccctt ctcggcatcg acgaagcgcg cggcctcggc ttccgggttc aggctcgggt
     2281 cattgaacag gccgtcggcc agctcgccga ggccggcttc cagggcgatc tggcccttgg
     2341 tgcggcgctt ctgcttgtac ggcaggtaga ggtcttcgag gcgggtcttg gtgtcggcct
     2401 cgtcgatctc gcgcttgagt tcgggcgtaa gcttgccctg ttcctcgatg ctggcgagga
     2461 tcgcggcgcg acgctcgtcc atctcgcgca ggtagcgcag gcgctcttcc aggtggcgca
     2521 gctgggtgtc gtccaggctg ccggtgactt ccttccggta gcgggcgatg aagggcacgg
     2581 tggagccttc gtcgagcagg gccacggcgg cggcgacctg ttgcgggagg acgccgagct
     2641 cggcggcgat acgcttgttg atgctatcca tgaacacact acctgacaga aaaaccacgc
     2701 cgactggccg acgcgaaagc gccgcattat aaacaccgag gcggaaagcc ttgggaaccg
     2761 ttcagggaaa aatctgctaa caatggccaa gccgcggcgc atcggcgctg ggcgataatg
     2821 cgccgccact cgcacaggag agaacatgag caccgaaggc gaaaagatcc tcatcgtcga
     2881 cgacgacccc ggcctgcgcc gcctgctgga acgcttcctc agcgagcagg gttatcgcgt
     2941 gcgcgcggtg gaaaacgtcg agcagatgga ccgcctgctg gcccgcgaac tgttccagct
     3001 gctggtgctc gacctgatgc tgccgggcga ggacggcctc tccgcctgcc gccgcctgcg
     3061 cgaggcgaac aaccagatgc cgatcatcat gctcaccgcc aagggcgacg aggccagccg
     3121 catccagggc ctggagggcg gcgccgacga ctacctggcc aagccgttca acccgcgcga
     3181 gctgctggcg cggatcaagg ccgtgctgcg ccgtcaggcg ccggtagtgc cgggcgcccc
     3241 ggcgagcgcg gatgagaccg tcagcttcgg cgactacgag ctgtccctgg cgacccgcga
     3301 gctgaagagg ggcgaggaag tacacatgct caccaccggc gagttcgccg tgctcaaggc
     3361 cctggtccag cacgcccgcg aaccgctgac ccgcgacaag ctgatgaacc tggcccgcgg
     3421 ccgcgagtgg gacgcgctgg agcgctccat cgacgtgcag atcagccgcc tacgccggct
     3481 gatcgagccg gacccgtcca agccgcgcta tatccagacc gtctggggcg tgggttacgt
     3541 cttcgtgccg gacggcagca agtgatgtgc gccggcgcgt gccgttgatc cgcggcctgc
     3601 aggtgctcct gctcacgggc ctgagcagtt tggtgctgct ggccctctac gggctcggtc
     3661 atgaattggc gctgcaacag ggccgcccgc tgcgcggtgg cgtggcctgg ggcctgctgg
     3721 ccggcgcgtt acagctgtgc tggttcccgc tgttgatgct gctgcagaac accggtgcgc
     3781 tgctctggcc cgcgcggcgc ctgcagctgg ccctcggcgc catggccctg ttcgttcttc
     3841 ccttgctggt gctcgcgccg ccttgggcag attggagtca cacccatcgt tcggcttatc
     3901 tgctgttctg tgctgccatg ggcattgcgc tgtcatacgc aggtcagtcc gttctcccgc
     3961 attggtgcgc tcgccgctcc ggcgaccgct acatggcgac ataaatgaaa acccctcgct
     4021 ggttcccgca aagcttcttc gcccgcaccc tgtggctggt gctcgtcgtc gtgctgttct
     4081 ccaaggcgct gaccctggtg tacctgatga tgaacgagga catgctggtc gaccgccagt
     4141 acagccatgg cgcggcgctg acgctgcgcg cctactgggc ggcggacccg gaggaccgtg
     4201 cgcagatcgc cgaggcggcg accctgaccc gggtggcgcg cgagcaggtg ccggcgaccg
     4261 agcagcactg gccctattca gagg
//
LOCUS       DATIHC010000311         2931 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10200, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000311 DATIHC010000000
VERSION     DATIHC010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2931
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10200"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1027)
                     /locus_tag="VLF16_05040"
     CDS             complement(<1..1027)
                     /locus_tag="VLF16_05040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010489640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjiH family protein"
                     /protein_id="HSX70281.1"
                     /translation="MTDHTLADRTRHTALARLLGYSLIGLVLFFVPFDIDGRSTILID
                     HAASALQAHARPLVIGLALLFMFYGALAPWLDGSWRRSLTHTVFSVLKVFGLLVGAAY
                     LLRLGPQALYQPDMLPFLFEKLVLSLALIVPLGSLALVFLIGFGLLELVGVLMQPVMR
                     PIWRTPGKSAIDAVASFVGSYSVGLLITDRMYQQGHYSLREAAIIATGFSTVSAPFMV
                     IIAKTLGLMPVWNLYFWSAMAVTFVVTALSARIYPLSRLPSESREEAPLPPGESRLGH
                     AWRAGLQQAGGAPALHLALLETFRDGLRMTAAILPSILAVGLLGLLAAKYTPLFEAIG
                     LLLYPVTA"
     gene            complement(1073..2029)
                     /gene="hutG"
                     /locus_tag="VLF16_05045"
     CDS             complement(1073..2029)
                     /gene="hutG"
                     /locus_tag="VLF16_05045"
                     /EC_number="3.5.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017639006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050415 - formimidoylglutamase activity
                     [Evidence IEA];
                     GO_process: GO:0019556 - histidine catabolic process to
                     glutamate and formamide [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formimidoylglutamase"
                     /protein_id="HSX70282.1"
                     /translation="MLADRFSLDAWTGRTDPEADSPRWHQRIQPLGEAGEPGLALLGF
                     ACDEGVRRNHGRVGAAGGPLALRKALANLAWHRGAPAYDAGDVTCEDGDLAAAQARLA
                     RGVRTLLDRGHLPLVLGGGHEVAFGSWSGLAEHLAGGPTPRPAAPKIGIVNFDAHFDL
                     RDPAHVQSSGTPFAQIAAQCAARGWPFRYACLGVSRASNTRALFARAAELGVLVREDR
                     DIRESTLDALGAELDAFVADCDALYLTLDIDVLPACEAPGVSAPAARGVRLELLEPLL
                     ERLRDSGKLRLVDFAELNPEHDIDNRTARAAARLIHLLSLNA"
     gene            complement(2019..>2931)
                     /gene="hutI"
                     /locus_tag="VLF16_05050"
     CDS             complement(2019..>2931)
                     /gene="hutI"
                     /locus_tag="VLF16_05050"
                     /EC_number="3.5.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050480 - imidazolonepropionase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="imidazolonepropionase"
                     /protein_id="HSX70283.1"
                     /translation="LSTVRATRAADEDELIATSLPRLDALLADGVTTVEIKSGYGLTL
                     ADELKMLRVARRLGELRPVRVTTTLLGAHALPPEYAGRADDYVALVCEQMIPAAVEAG
                     LADAVDVFCEGIGFSPAQCERVYQAASTHGLAIKAHAEQLSNLGGSALAAKYGALSAD
                     HIEYLDEAGVQAMAEAGTVAVLLPGAFHVLRETRLPPIELLRRYGVPMAVASDANPGT
                     SPICMPSLMANLACTLLRLTPREALAGMTAHAARALGLPELGRIAVGAPADLCLWDIR
                     QPAELAYAVQAGRLRQRIFKGAITHAR"
BASE COUNT          454 a          983 c         1122 g          372 t
ORIGIN      
        1 gcgcggtgac cgggtagagc agcaggccga tggcttcgaa cagcggcgtg tacttggcgg
       61 ccagcaggcc gagcagcccc acggcgagga tgctcggcag gatcgccgcg gtcatgcgca
      121 ggccatcgcg gaaggtttcc agcagcgcta ggtgcagcgc cggcgcaccg cccgcctgct
      181 gcaggccggc gcgccaggca tggccgaggc ggctctcgcc cggcggcagc ggcgcttcct
      241 cgcggctttc ggagggcagg cgcgacagcg gatagatgcg cgcgctgagc gcggtgacga
      301 cgaaggtcac ggccatggcg ctccagaagt acaggttcca caccggcatc aggcccaggg
      361 tcttggcgat gatcaccatg aacggcgcgg acacggtgga aaaaccggtg gcgatgatcg
      421 ccgcctcgcg caggctgtaa tgcccctgct ggtacatgcg gtcggtgatc agcaggccca
      481 ccgagtagct gccgacgaag ctcgccacgg catcgatggc cgacttgccc ggggtgcgcc
      541 agatcggccg catcaccggc tgcatcagca cgccgaccag ttccagcagg ccgaagccga
      601 tgaggaacac cagcgccagc gagccgagcg gcacgatcag cgccaggctg agcaccagct
      661 tctcgaacag gaacggcagc atgtccggct ggtacagcgc ctgcgggccg agccgcagca
      721 ggtaggcggc gccgaccagc aggccgaaga ccttgagcac gctgaacacc gtgtgggtca
      781 ggctgcgacg ccagctgccg tcgagccagg gcgccagcgc gccgtagaac atgaacagca
      841 gcgccaggcc gatcaccagc ggccgcgcat gggcctgcag ggcgctggcg gcatggtcga
      901 tgaggatggt cgagcggcca tcgatgtcga agggcacgaa gaacagcacc agcccgatca
      961 ggctgtagcc gagcaggcgg gccagggccg tgtggcgagt tcggtccgcc agggtgtggt
     1021 cggtcatgcg ggtttcctcg gtacttgttg ttgtgcggga aatgccctgg ggtcaggcgt
     1081 tcagggacag cagatggatc agccgcgccg ccgccctggc ggtgcggtta tcgatgtcgt
     1141 gctcggggtt gagctcggcg aagtcgacca ggcgcagctt gccgctgtcg cgcaggcgtt
     1201 ccagcagcgg ctcgagcagc tccaggcgca cgccgcgcgc cgccggggcg ctgacgcccg
     1261 gtgcctcgca ggccggcagc acgtcgatgt cgagggtcag gtacagcgca tcgcagtcgg
     1321 cgacgaaggc gtccagctcg gcgccgaggg cgtccagcgt cgactcgcgg atatcgcggt
     1381 cctcgcgcac cagcacgccc agctcggcgg cgcgggcgaa cagcgcgcgg gtattgctgg
     1441 cgcggctcac acccaggcag gcatagcgga acggccagcc gcgcgcggcg cactgcgcgg
     1501 cgatctgcgc gaagggcgtg ccggaggact gcacgtgggc cgggtcgcgc aggtcgaagt
     1561 gggcgtcgaa attgacgatg ccgatcttcg gggcggccgg ccgcggcgtc ggcccgccgg
     1621 ccagatgctc ggccaggccg gaccagctgc cgaaggccac ctcgtggcca ccgccgagca
     1681 ccagcggcag gtggccgcgg tccagcaaag tgcgtacgcc acgcgccagg cgcgcctggg
     1741 cggcggccag gtcgccgtct tcgcaggtca cgtcgccggc atcgtaggcc ggcgcgccgc
     1801 ggtgccaggc caagttggcc agcgccttgc gcagcgccag cgggccgccc gcggcaccga
     1861 cccggccatg gttacggcgc acgccctcgt cgcaggcgaa gccgagcaga gccaggcccg
     1921 gctcgccggc ctcgcccagc ggctggatgc gctggtgcca gcgcgggctg tccgcctcgg
     1981 ggtcggtgcg cccagtccag gcgtccagag agaaacgatc agcgagcatg ggtgatggct
     2041 cccttgaaga tgcgctggcg caggcgaccg gcctgtaccg cataggccag ctcggcgggc
     2101 tggcggatgt cccacaggca caggtcggcc ggggcgccga cggcgatgcg gcccagttcg
     2161 ggcaggccga gggcgcgagc ggcgtgggcg gtcatgccgg ccagcgcctc gcgcggggtg
     2221 aggcgcagca gcgtgcaggc caggttggcc atcaggctgg gcatgcagat tggcgaggtg
     2281 ccggggttgg catcgctggc cacggccatg ggcacgccgt agcgacgcag cagttcgatg
     2341 ggcggcagac gggtctcgcg cagcacatgg aaggcgccgg gcagcagcac ggcgacggtg
     2401 ccggcctcgg ccatggcctg cacgccggcc tcgtcgaggt attcgatatg gtcggccgac
     2461 agcgcgccgt acttggccgc cagcgcgctg ccgccgaggt tggacagctg ttcggcgtgg
     2521 gccttgatcg ccagaccatg ggtgctggcc gcctggtaga cgcgctcgca ctgcgccggg
     2581 gagaagccga tgccctcgca gaacacgtcc accgcgtcgg ccaggccggc ctcgacggcg
     2641 gccgggatca tctgctcgca gaccagcgcc acatagtcgt cggcacgccc ggcatattcc
     2701 ggcggcaggg catgggcgcc gagcagcgtg gtggtgacgc gcaccgggcg cagctcgccg
     2761 aggcgacggg ccacgcgcag catcttcagc tcgtcggcca gggtgaggcc gtagccggac
     2821 ttgatctcga ccgtggtcac gccatcggcc agcagcgcgt cgaggcgcgg caggctggtg
     2881 gcgatcaact cgtcctcgtc ggccgcgcgg gtggcgcgca cggtgctgag g
//
LOCUS       DATIHC010000312         2241 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42871, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000312 DATIHC010000000
VERSION     DATIHC010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2241)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2241)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2241
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42871"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..510
                     /locus_tag="VLF16_05055"
     CDS             <1..510
                     /locus_tag="VLF16_05055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative metalloprotease CJM1_0395 family
                     protein"
                     /protein_id="HSX70284.1"
                     /translation="QLQISELSRRDREVRSHEQAHASVGGAYAGAPTYSFKRGPDGKS
                     YAVAGEVSIDTSVVPNDPEATLRKMALVLRAALAPAEPSAQDRRVAAQAQAQAATARA
                     ELAQMRREETSAAAEERALSREERLAEEEKQAEEDEKQPAQSPPPGLDLYRQLAQLQA
                     PSSAVDLLI"
     gene            680..>2241
                     /locus_tag="VLF16_05060"
     CDS             680..>2241
                     /locus_tag="VLF16_05060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylacyl-CoA dehydrogenase"
                     /protein_id="HSX70285.1"
                     /translation="MPEYKAPLRDIRFVRDELLGYEAHYQSLPGCQDATPDMVSAILE
                     EGAKFCEQVIAPLNRVGDLEGCTWSESGVKTPTGFKEAYQQFVEGGWPSLAHNVDHGG
                     QGLPESLGLALSEMVGEANWSWGMYPGLSHGAMNTIEAHGTDEQKHTYLTKLVSGEWT
                     GTMCLTEPHCGTDLGMLRTKAEPQADGSYKVSGTKIFISAGEHDMVDNIVHIVLARLP
                     DAPQGTKGISLFIVPKFNVNADGSVGSRNAVSCGSLEHKMGIHGNATCVMNFDGATGY
                     LIGPANKGLNCMFTFMNTARLGTALQGLAHAEIAFQGGIKYARERLQMRSLTGPKAPD
                     KAADPIIVHPDVRRMLLTMKAFAEGNRAMVYFTAKQVDIVKYSQDEEEKKAADAMLAF
                     LTPIAKAFMTEVGFEAANHGVQIYGGHGFIAEWGMEQNVRDSRISCLYEGTTGVQALD
                     LLGRKVLMTQGEALKGFTKIVHKFCQANEGNEAIKGLVAPLAQLNKEWGDLTMKVGMA
                     AMKDREEVGAASV"
BASE COUNT          444 a          756 c          701 g          340 t
ORIGIN      
        1 caactgcaga tctccgagct ttcccgccgt gatcgcgagg tgcgcagcca cgagcaggcc
       61 cacgcctccg tcggcggcgc ctatgccggg gcgcccacct acagcttcaa gcgcgggccg
      121 gacggcaaga gctacgccgt cgccggcgaa gtcagcatcg acaccagtgt cgttcccaac
      181 gaccccgaag ccacgctgcg caagatggcg ctggtgctgc gcgccgcgct ggcgccggcc
      241 gagccttcgg cgcaggatcg acgcgtggct gcccaggccc aggcccaggc ggcgaccgcg
      301 cgtgccgagc tcgcgcagat gcgtcgcgag gagacgagtg ccgcggccga agagcgtgcg
      361 ctgagtcgcg aggagcgtct ggccgaggag gagaagcagg ccgaggagga cgagaaacag
      421 cccgcgcaat cgccgccgcc cggcctggat ctctaccggc agctggccca gttgcaggcc
      481 ccgtcgtccg ccgtcgacct gctcatctga gcggtacgtg gcagatgctt gacaagggcg
      541 tgggggtaaa cgtatgtttc aaacgcctgt ttgagtgcct ggtgggttcg tgcctgcctg
      601 gcgccgggag aaatcccgcg aacgaccgct ccagacggtc accctaacac taaggaatcc
      661 accgtagagg tttaccgcta tgcctgagta caaggccccc ttgcgtgata tccgcttcgt
      721 tcgcgacgaa ctgctcggct acgaagcgca ctatcagagc ctgcctggct gccaggacgc
      781 caccccggac atggtcagcg ccattctgga agaaggcgcc aagttctgtg agcaggtcat
      841 cgctccgctg aaccgcgttg gtgacctcga gggctgcacc tggtccgaat ccggcgtgaa
      901 gacccccacc ggcttcaaag aggcctacca gcagttcgtt gaaggcggct ggccgagcct
      961 ggcacacaac gtcgaccacg gcggccaagg cctgccggaa tccctgggcc tggccctgag
     1021 cgagatggtc ggcgaagcca actggtcctg gggcatgtac cccggcctgt cccacggcgc
     1081 gatgaacacc atcgaagccc acggcaccga cgagcagaag cacacctacc tgaccaagct
     1141 ggtatccggc gagtggaccg gcaccatgtg cctgaccgag ccgcattgcg gtaccgacct
     1201 gggcatgctg cgcaccaagg ccgagccgca ggctgacggc tcctacaagg tgtccggcac
     1261 caagatcttc atctccgccg gcgaacacga catggtcgat aacatcgtcc acatcgtgct
     1321 ggcccgcctg cccgacgccc cgcagggcac caagggtatc tccctgttca tcgtgccgaa
     1381 gttcaacgtg aacgccgatg gcagcgttgg ctcgcgcaat gccgtttcct gtggctccct
     1441 ggagcacaag atgggcatcc acggcaacgc cacctgcgtg atgaacttcg acggcgccac
     1501 cggctacctg atcggcccgg ccaacaaagg cctgaactgc atgttcacct tcatgaacac
     1561 tgctcgcctg ggtaccgctc tgcagggcct ggcccacgcc gaaatcgcct tccagggcgg
     1621 catcaagtac gcccgcgagc gtctgcagat gcgttccctg accggtccga aagcgccgga
     1681 caaggctgcc gacccgatca tcgtccaccc ggacgtgcgt cgcatgctgc tgaccatgaa
     1741 ggccttcgcc gaaggcaacc gcgcgatggt gtacttcacc gccaagcagg tcgacatcgt
     1801 caagtacagc caggacgaag aagagaagaa agccgccgac gcgatgctgg ccttcctgac
     1861 tccgatcgcc aaggccttca tgaccgaagt cggcttcgaa gccgccaacc acggcgtgca
     1921 gatctacggt ggccacggct tcatcgccga gtggggcatg gagcagaacg tgcgcgacag
     1981 ccgcatctcc tgcctgtacg aaggcaccac cggtgttcag gctctcgacc tgctcggccg
     2041 taaagtgctg atgacccaag gcgaagccct gaaaggcttc accaagatcg tgcacaagtt
     2101 ctgccaggcc aacgaaggca acgaggccat caaaggcctg gtcgcaccgc tggcccagct
     2161 gaacaaggag tggggcgacc tgaccatgaa agtgggcatg gccgcgatga aggaccgcga
     2221 agaagtcggt gccgcctcgg t
//
LOCUS       DATIHC010000313         1567 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_26164, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000313 DATIHC010000000
VERSION     DATIHC010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1567
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26164"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            2..1432
                     /locus_tag="VLF16_05065"
     CDS             2..1432
                     /locus_tag="VLF16_05065"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HSX70286.1"
                     /translation="MIGAGFAGLGLAMLLRKRGEDDFLILEKGAEPGGTWRDNHYPGA
                     ACDVPSHLYSFSFEPKTDWSRRYAPQAEIFAYVRECIDKHQLAPRIRCNSEVAEAWFD
                     EAAALWRVTTGDGAVFSARALVSACGQLNRPLQAKLPGLERFAGESFHSARWRHDVDL
                     TGKRVAVIGTGASAIQFVPQIVPRVGRLHLFQRTPAYVLPKPDRAYSRFERALMRRWP
                     WTQQLDRAWQYLFHEVRGVAFFLLPWLMKPYRQLFLRHIAREVADPALRAKLTPDYPL
                     GCKRILISNDYYPALVQPQVEVVNEAIREVTERGIVTADGVEREVDVLIHGTGFAASD
                     FLAPMRIRGLGGLDLNQAWHDGAEAYKGISVAGFPNLFILYGPNTNLGHNSIIYMLES
                     QFPYVLDCLDQLQKGVRYLDVRRPVQDAWNRQVQHDIQRSVWEQGCSSWYKNAAGKHT
                     NNWAGFTFSYRNHTRRPQWSDYDRVR"
BASE COUNT          241 a          565 c          518 g          243 t
ORIGIN      
        1 gatcatcggt gccggcttcg ccggcctcgg cctggccatg ctgctgcgca agcgcggcga
       61 ggacgacttc ctgatcctcg agaagggcgc cgagcccggc ggcacctggc gcgacaatca
      121 ctaccccggc gcggcgtgcg acgtgccctc gcacctgtat tccttttcct tcgagccgaa
      181 gaccgactgg agccggcgct acgcgccgca ggcggagatc tttgcctacg tgcgcgagtg
      241 catcgacaag caccaactgg cgccgcgcat tcgctgcaac agcgaggtgg ccgaggcctg
      301 gttcgacgaa gcggccgccc tgtggcgggt gaccaccggc gatggcgccg tcttcagcgc
      361 gcgggcgctg gtcagcgcct gcggccagct caaccggccg ctgcaggcga agctgcccgg
      421 gctggagcgc tttgccggcg agagcttcca ttcggcgcgc tggcgtcacg acgtcgatct
      481 gaccggcaag cgcgtggcgg tgatcggcac cggcgccagc gccatccagt tcgtgccgca
      541 gatcgtgccc agggtcggtc gcctgcacct gttccagcgc accccggcct acgtgctgcc
      601 caagccggac cgcgcctaca gccgcttcga gcgggcgctg atgcggcgct ggccctggac
      661 gcagcaactc gaccgggcct ggcaatacct gttccacgag gtgcgcgggg tggcgttctt
      721 ccttttgccc tggctgatga agccctatcg ccagctgttc ctgcgccaca tcgcccgcga
      781 agtggccgac cctgcgctgc gcgcgaagct gacgccggac tacccgctgg gctgcaagcg
      841 catcctgatc agcaacgact actacccggc gctggtgcag ccgcaggtgg aggtggtgaa
      901 cgaggcgatc cgcgaggtga ccgagcgcgg catcgtcacc gccgatggcg tggagcgcga
      961 ggtggacgtg ctgatccatg gcaccggctt cgccgccagc gacttcctcg cgccgatgcg
     1021 catccgcggc ctcggcggcc tcgacctcaa ccaggcctgg cacgacggcg ccgaggccta
     1081 caagggcatc agcgtcgccg gcttccccaa tctgttcatc ctctacgggc cgaacaccaa
     1141 cctgggccac aactcgatca tctacatgct cgagagccag ttcccctacg tgctggactg
     1201 cctggaccag ctgcagaaag gcgtgcgcta tctggacgtg cgccggccgg tgcaggacgc
     1261 ctggaaccgc caggtgcagc acgacatcca gcgctcggtg tgggagcagg gctgcagcag
     1321 ctggtacaaa aacgccgccg gcaagcacac caacaactgg gccggcttca ccttcagcta
     1381 ccgcaatcac acccgccgac cgcagtggag cgactatgac cgggtccgtt gaactgcccg
     1441 caccgggcgc cggccagcgc ctgctcaccg ctttgctgcg cacctgcacg cgcctgatgt
     1501 tcgcgctcgg catgcgcccg cgtgtgtcgc cggtggtgca gcggcgggtg ctgcgcctgg
     1561 ccaccct
//
LOCUS       DATIHC010000314         4576 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37804, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000314 DATIHC010000000
VERSION     DATIHC010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4576
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37804"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(16..417)
                     /locus_tag="VLF16_05070"
     CDS             complement(16..417)
                     /locus_tag="VLF16_05070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quorum-sensing-regulated virulence factor family
                     protein"
                     /protein_id="HSX70287.1"
                     /translation="MPRLIALLALATVLPAVQAASLQEHELTRTLEQVAKESSAGTPR
                     AINEDILDQGYTVEDNELVNHLSVRAAHAEQMRSNPATVRNQLGASVCRNQGYLRLLA
                     QGAVLRYQFSEYKSNQPVATERFAKADCGLQ"
     gene            537..1253
                     /locus_tag="VLF16_05075"
     CDS             537..1253
                     /locus_tag="VLF16_05075"
                     /EC_number="2.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016494356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016432 - tRNA-uridine
                     aminocarboxypropyltransferase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-uridine aminocarboxypropyltransferase"
                     /protein_id="HSX70288.1"
                     /translation="MSHAVARLRAERLARSLKPFVSRGSRSERCPGCRVIPSYCLCAW
                     RPNVEVRAGVCLLMYDVEALKPSNTGWLIADLVADTHAFGWKRTEVDPRLLELLDDPQ
                     YAPCVVFPGEYAEPGRVIEELPPLAEGKRPLFILLDATWTEARKMFRKSPYLNRFPVL
                     SLRPEQLSRYRLRRSTRDEHLCTAEVAALCLELAGEPQASAALDAWLDLFTEHYLGAK
                     HRRVVDECSPAHRAIEPFLR"
     gene            complement(1279..2169)
                     /locus_tag="VLF16_05080"
     CDS             complement(1279..2169)
                     /locus_tag="VLF16_05080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HSX70289.1"
                     /translation="MRSQALRADLLMLLTAMIWGSSFVAQRLGMDAVGPFLYTGLRFA
                     LATAALLPLVVWLGRREGEQRPAPVNRSLLLGGLAMGLALSLGINLQQVGLLFTSVTN
                     SGFITGLYVIVVPLLGLVIGQRTGLGTWLGAGLAVLGMFLLSVGEGFQVASGDWLQLA
                     GAFVWGVHVLLVSFFASRHDPLRLALLQFATCAVLSLVLAVLFEEIRLDAILAAGPAI
                     LYGGLLGVAVGFTLQVVAQKHAIASHAAIILSLEAVFAAIAGALLLGETLALKGYFGC
                     ALMFAGMLLAQLWPKKVGIA"
     gene            2293..2943
                     /gene="erdR"
                     /locus_tag="VLF16_05085"
     CDS             2293..2943
                     /gene="erdR"
                     /locus_tag="VLF16_05085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor ErdR"
                     /protein_id="HSX70290.1"
                     /translation="MAAYEILIADDHPLFRSALQQALTLGLGPDVRLVEAASIAELEA
                     RLAEKGDWDLVLLDLNMPGAYGFSGLVLLRGQYPQIPVVMVSAQEDAAVVSRSREFGA
                     SGFIPKSSPLETIQQAVRQVLDGDAWWPPQAFAAASVSAEAKAASAGLASLTPQQFRV
                     LTMVCDGLLNKQIAFELNVSEATIKAHVTAIFRKLGVRTRTQAALLLQQMESIPGH"
     gene            3053..3418
                     /locus_tag="VLF16_05090"
     CDS             3053..3418
                     /locus_tag="VLF16_05090"
                     /EC_number="2.7.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004423509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004143 - ATP-dependent diacylglycerol
                     kinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HSX70291.1"
                     /translation="MSPFKGQTGLKRILNAAGYSFDGLRAAFVGEAAFRQLVLLNVVL
                     IPLAFWLDVSPVERALMVAVSMLSLVVELLNSAVEAAIDRISLERHPLSKNAKDMGSA
                     AQLTSLAVITLVWAIILLG"
     gene            complement(3474..>4576)
                     /locus_tag="VLF16_05095"
     CDS             complement(3474..>4576)
                     /locus_tag="VLF16_05095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HSX70292.1"
                     /translation="WSEVRLTLHHDYRQALAVQAFDHLPEHMDFEFLPQQVELHPGEQ
                     TEFGYRVRPLKRGHFRFPCCELLLPSPLRLWQSRRFIDQASETRVYPDFARLYGAQLM
                     AVNDWLSQMGVRQRQRRGLGLEFHQLREFRDGDTLRQIDWKATARKRTPIAREYQDER
                     DQQIVFLIDCGRRMRSQDDELSHFDHALNACLLLSYVALRQGDAVGLATFAGEQDQYV
                     APVKGQAHISSLLNAVYDLDSTRRPADYAAAINALLARQRRRALVVLVTNLRDEDDEE
                     LLGAVRRLGRQHRVLIASLREEVLDRLRHTQVQDYEQALAYCGTVDYLNARAGLHERL
                     LAHGVPVLDARPKELGPELVGRYLAWKKAGVL"
BASE COUNT          726 a         1537 c         1569 g          744 t
ORIGIN      
        1 gcggcaaggg ttgaatcact gcaggccgca gtcggccttg gcgaagcgct cggtggccac
       61 cggctgattg ctcttgtact cgctgaactg gtagcgcagc acggcgcctt gggccagcag
      121 acgcagatag ccctgattcc tgcatacact ggcgcccagc tggttgcgca ccgtagccgg
      181 gttgctgcgc atctgttcgg catgggcggc ccgcacgctg agatggttga ccagttcgtt
      241 gtcttccacc gtatagccct ggtcgagtat gtcctcgttg atcgcccgcg gcgtgccggc
      301 actgctttcc ttggcgacct gctcgagggt gcgtgtcagc tcgtgctcct gcagcgaggc
      361 ggcctggacg gcaggcaata cggtggcgag ggcgagcagg gcgatgaggc ggggcatgac
      421 gatctccatg attgcgatgt gccttcgacc ggtgctcctt gcccgggttc agcagcgcca
      481 tcttactcgc tgtcgacggc gaaggtagac tgcgcgcctt tcccgtggag tccgtcatga
      541 gccatgccgt cgcccgcctg cgcgccgagc gcctggcgcg cagcctcaag cccttcgtgt
      601 cccgaggttc gcgctccgag cgctgccccg gttgccgggt gatccccagc tactgcctgt
      661 gcgcctggcg gccgaacgtc gaggtgcggg ccggcgtgtg cctgctgatg tacgacgtgg
      721 aggcgctgaa accgagcaat accggctggc tgatcgccga tctggtggcc gacacccatg
      781 ccttcggctg gaagcgcacc gaggtcgacc cgcgcctgct ggagctgctc gacgacccgc
      841 aatatgcgcc ctgcgtggtg ttccccggcg aatacgccga gcccggacgg gtgatcgaag
      901 agctgccgcc gctggcagag ggcaagcgcc cgctgttcat cctgctcgat gccacctgga
      961 ccgaggcgcg caagatgttc cgcaaaagcc cgtatctgaa ccgcttcccg gtgctcagcc
     1021 tgaggccgga gcagttgtcg cgctatcgcc tgcgccgctc cacgcgcgac gagcatctgt
     1081 gcaccgccga ggttgcggcg ctctgtctgg aattggccgg cgagccgcag gcgtccgcgg
     1141 ccctggatgc ctggctggac ctgttcaccg aacactacct gggcgccaag caccgccggg
     1201 tcgtggatga atgcagtccg gcgcaccggg caatcgagcc gtttcttcga tagacggggc
     1261 gccgccggcg gtgcactcct acgcgatgcc gaccttcttc ggccacagct gggccagcag
     1321 catgccggcg aacatcaggg cgcagccgaa gtagcctttc agtgccagcg tctcgccgag
     1381 caacagggcg ccggcgatgg cggcgaatac cgcttccagc gagaggatga tggcggcatg
     1441 ggaggcgatg gcgtgcttct gcgccacgac ttgcagggtg aagccgaccg ccacgccgag
     1501 cagaccgcca tagaggatgg ccgggccggc ggcaagaatg gcatccagcc ggatttcctc
     1561 gaacagcacc gcgagaacca ggctcagcac cgcgcaggtg gcgaactgca gcagggccag
     1621 gcgcagcggg tcgtggcggc tggcgaagaa gctcaccagc agtacatgca cgccccagac
     1681 gaaggcaccg gccagctgca accagtcgcc ggaggcgacc tggaaaccct cgccgacact
     1741 gagcaggaac atgccgagca ccgccagtcc tgcgcccagc caggtaccca ggcccgtgcg
     1801 ctggccgatc acaagaccga gcaacggcac cacgatgacg tatagcccgg tgatgaagcc
     1861 ggagttggtc acgctggtga acagcaggcc gacctgctgc aggttgatgc ccagcgacag
     1921 tgccaggccc atggccaggc cgccgagcag caggctgcga ttgaccggcg cgggccgttg
     1981 ttcgccctcg cgcctgccga gccagaccac cagcggcagc agggccgcgg tggcgagggc
     2041 gaagcgcagg ccggtataga ggaaggggcc gacggcgtcc atgcccaggc gctgggcgac
     2101 gaaggaggag ccccagatca tcgcggtcag cagcatcagc aggtcggcgc gcagggcttg
     2161 gcttcgcatg tcggttctcg gcggcaaaag ctggcgactt tgccgcaaag cgcggagctt
     2221 gaccaccccg ctacggctcg gcatgctgag cgccgcctcg ccagccagct ggacaacaag
     2281 aacaggaaag ccatggccgc ctacgagatc ctcattgccg acgatcaccc gctgttccgc
     2341 agtgccctgc agcaggccct gaccttgggg ctgggcccgg acgtgcgtct ggtggaggcg
     2401 gccagcatcg ccgaactgga ggcgcgcctt gccgagaagg gtgattggga cctggtcctg
     2461 ctcgatctca acatgcccgg cgcctacggt ttttccggtc tggtgctgct acgcgggcag
     2521 tatccgcaga tcccggtggt gatggtctcg gcgcaggaag acgcggcggt ggtctcgcgt
     2581 tcccgcgagt tcggtgccag cggtttcatc cccaagtcga gcccgctgga gacgatccag
     2641 caggccgtgc gccaggtcct cgacggcgac gcctggtggc cgccgcaggc cttcgccgct
     2701 gctagcgtat cggccgaggc caaggcggcc agcgccggcc tggcgagcct gacgccgcag
     2761 cagttccgcg tgctgaccat ggtgtgcgac gggctgctga acaagcagat cgccttcgag
     2821 ctgaacgtct ccgaggccac catcaaggcc cacgtcaccg ccatcttccg caagctgggc
     2881 gtgcgcaccc gcacccaggc ggcgctgctg ctgcagcaga tggagtcgat tccggggcac
     2941 tagcgccttc gcgtcgctca cctcgcaacg gcttgcgccg cacacttcac gcatttttga
     3001 cggcgcagcc tctaaggtgc cgcccgtcat cgccacagga cagcagttct ccatgtcgcc
     3061 attcaagggc cagaccggcc tgaaacgtat cctcaatgcc gccggctatt cgttcgacgg
     3121 cctgcgcgcc gctttcgttg gtgaggccgc cttccgccaa ctggtcctgc tcaacgtggt
     3181 gctgatcccg ctggccttct ggctcgatgt gagcccggtg gagcgggcgc tgatggtggc
     3241 ggtgagcatg ctctcgctgg tcgtcgagct gctcaattcg gcggtggagg cggccatcga
     3301 ccgcatctcc ctggagcgcc acccgctgtc gaagaacgcc aaggacatgg gcagcgccgc
     3361 ccagctcacc tcactcgcgg tgattaccct ggtctgggcg atcatcctgc tgggctgatc
     3421 gtcccaggcc tcgccctagg cctgcccgcg tgcgccgcga atggcgccgg ggctcagagc
     3481 accccggcct tcttccaggc cagatagcgc ccgaccagtt ccgggcccag ctccttcggc
     3541 ctggcatcca gcaccggcac gccatgggcc agcaggcgct cgtgcaggcc ggcgcgggcg
     3601 ttcaggtagt ccaccgtgcc gcagtaggcc agggcctgct cgtagtcctg cacctgggtg
     3661 tggcgcaggc gatccagcac ttcctcgcgc aggctggcga tcagtacccg gtgctgacgc
     3721 cccagacgcc ttaccgcgcc gagcagctcc tcgtcgtcct cgtcacgcag attggtgacc
     3781 agtaccacca gggcgcggcg gcgctggcgg gcgagcaggg cgttgatcgc cgcggcgtag
     3841 tcggccgggc ggcgggtgct gtcgaggtcg tacacggcat tgagcaggct gctgatgtgg
     3901 gcctggccct ttaccggcgc gacgtactgg tcctgctcgc cggcgaaggt cgccaggccc
     3961 accgcatcgc cctggcgcag ggcgacatag ctgagcagca ggcaggcatt gagggcgtga
     4021 tcgaagtgtg acagctcgtc gtcctgactg cgcatgcgcc ggccgcagtc gatcaggaag
     4081 acgatctgct ggtcgcgctc gtcctgatac tcgcgggcga tcggcgtgcg cttgcgcgcg
     4141 gtggccttcc aatcgatctg gcgcagggtg tcgccgtcgc ggaattcgcg cagctggtgg
     4201 aactccagac cgaggccgcg gcgctggcgc tggcgcacgc ccatctggct gagccagtcg
     4261 ttcacggcca tcagctgggc gccatatagg cgggcgaagt ccgggtagac gcgggtctcg
     4321 ctggcctggt cgataaaacg gcgcgactgc cacaggcgca gtgggctggg cagcagcagc
     4381 tcgcagcagg ggaagcggaa gtgcccgcgc ttgagcgggc gtacccgata gccgaactcg
     4441 gtctgctcgc ccggatgcag ctccacctgc tgcggcagga actcgaagtc catgtgctcg
     4501 ggcaggtgat cgaaggcctg caccgccagg gcctgacgat agtcgtggtg cagggtcagg
     4561 cgcacctcgc tccagc
//
LOCUS       DATIHC010000315         2452 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42887, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000315 DATIHC010000000
VERSION     DATIHC010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2452)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2452)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2452
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42887"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1463
                     /locus_tag="VLF16_05100"
     CDS             <1..1463
                     /locus_tag="VLF16_05100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017278864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4105 domain-containing protein"
                     /protein_id="HSX70293.1"
                     /translation="RRFSLSDDPRLLDLAGWQQLVGRRGAREQDNGQVARTPDHYELS
                     NSREFVAVNMEYFLLDPTYACRRPALQHYLREHFAWQPAQQAECAERVPYLNAGRDFA
                     RQPLGWLDPERVYEVDYLLAEPNQQWASRWGHSMLRLVICAPGRPRGPACRLDLDQHL
                     VLSYRAFVGDVQLSSWDGLTGAYPSRLFILPLAQVIEEYTKVELRSLASVPLRLSRED
                     VERLVRRSAELHWSYDGDYWFLSNNCAVETLKLLRSGTDRGELQDLDSIMPNGLLDLL
                     EGRGLADRSVLDDPREALRLGYRFDSFRERYQAMFEILRARLAVPQQTVEDWLAQPAA
                     ERRRWSERADLRASAALLLLEQAALRRQLLLAQEQLKQRYLGARDDPQDRRFTDADAT
                     LREILDSSGFLSRPAELLDAGYGLPQPGEWQQLEAASSERQLKLRQLNDSLDKEVRRL
                     LEPELVAEIEASEANLASLGNHLRELHKAGGGLVLP"
     gene            complement(1510..1911)
                     /locus_tag="VLF16_05105"
     CDS             complement(1510..1911)
                     /locus_tag="VLF16_05105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011058493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HSX70294.1"
                     /translation="MTETHTGGCHCGRLRYAFEEPLQDIAHCHCSICRRTTGGIVTTW
                     LTLPMASFRWTRGSAAAYASSASCTRYFCAHCGCHLSLFTTHSPETLDLTVASLDHPE
                     RAPADRHIWVGSRLPWLHLDENLPEEAEERL"
     gene            2001..>2452
                     /locus_tag="VLF16_05110"
     CDS             2001..>2452
                     /locus_tag="VLF16_05110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012020189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HSX70295.1"
                     /translation="MTVLLQSLWPLFALIVGGYFLRRHDFPGEAFWPAAERLNYFILF
                     PALLFSSLATAPLDNPALPRLALAVLLGLGGAWLALLLVRRLRGWPAGRFGAFTQGIL
                     RFNTYLGLAAIGSLHGQPGLVLAALLLALMVPSVNVLSVWSLSADRQV"
BASE COUNT          344 a          886 c          836 g          386 t
ORIGIN      
        1 cccgccgctt cagcctcagc gacgacccgc gcctgctcga tctggccgga tggcagcaac
       61 tggttggccg ccgcggtgcc cgcgagcagg acaacggcca ggtggcgcgc acgccagacc
      121 actacgagct gagcaattct cgcgaattcg tcgcggtgaa catggagtac ttcctgctcg
      181 accccaccta cgcctgccgg cgcccggcgc tgcagcacta cctgcgcgag catttcgcct
      241 ggcagccggc gcaacaggcc gagtgcgccg agcgcgttcc ctatctcaac gccgggcgcg
      301 acttcgcccg ccagccactg ggctggctcg acccggaacg ggtctacgag gtcgactacc
      361 tgctcgccga acccaatcag caatgggcca gccgctgggg ccacagcatg ttgcgcctgg
      421 tgatctgtgc ccccgggcgc ccgcgcggcc ccgcctgccg gctggacctg gatcagcacc
      481 tggtgctgtc ctaccgcgcc ttcgtcggcg acgtgcagct gtcgagctgg gacgggctga
      541 ccggcgccta cccctcgcgc ctgttcatcc tgccgctggc ccaggtgatc gaggaataca
      601 ccaaggtcga gctgcgcagc ctggcctcgg tgccgctacg cctgtcccgc gaggacgtcg
      661 agcgcctggt gcggcgctcc gccgagctgc actggagcta cgacggcgac tactggttcc
      721 tctccaacaa ctgcgccgtg gagaccctca agctgctgcg cagcggcacg gaccgcggcg
      781 agctgcagga cctcgacagc atcatgccca acggcctgct cgacctgctg gaaggccgtg
      841 gcctggccga ccgcagcgtg ctggacgacc cgcgcgaggc gttgcgcctg ggttatcgct
      901 tcgactcgtt ccgcgagcgc taccaggcga tgttcgagat cctgcgggcg cgcctggcgg
      961 tgccgcagca gacggtcgag gactggctgg cccagcccgc cgccgagcgc cgccgctggt
     1021 ccgagcgcgc cgacctgcgc gccagcgccg cgctgctgct gctcgagcaa gccgcgctgc
     1081 ggcgccagct gctgctcgct caggagcagc tcaagcaacg ctacctcggc gcccgcgacg
     1141 atccgcagga ccgccgcttc accgacgccg acgccaccct gcgcgagatc ctcgacagca
     1201 gcggctttct cagtcgcccg gccgagctgc tggatgccgg ttacggcctg ccgcaacccg
     1261 gcgagtggca gcagctggag gcggccagta gcgagcgcca gctgaaactg cgccagctca
     1321 acgactcgct ggacaaggaa gtgcggcgcc tgctggagcc ggagctggtg gccgagatcg
     1381 aggccagcga ggccaatctg gccagcctgg gcaaccactt gcgcgaactg cacaaggccg
     1441 gtggcggcct ggtactgccc taggcgggca gggcagcgag tgcgcagggc gtaccccacg
     1501 gagcgagcgc tagagccgct cttcggcttc ttccggcagg ttctcgtcga gatgcagcca
     1561 gggcaaccgg ctgccgaccc agatgtgccg gtcggccggc gcccgctccg ggtggtcgag
     1621 gctcgccacc gtgagatcga gcgtctccgg gctgtgggtg gtgaacaggc tcagatgaca
     1681 gccgcaatgg gcgcagaaat aacgggtgca gctggcggac gaggcgtagg cggcggcgct
     1741 gccccgggtc cagcggaagc tcgccatcgg cagggtcagc caggtggtga cgatgccacc
     1801 ggtggtgcgc cggcagatcg aacaatggca gtgcgcgatg tcctgcagcg gctcctcgaa
     1861 ggcgtagcgc agccggccgc aatggcagcc gccggtatgg gtctcggtca tgacgagctc
     1921 ctgggggacg agcgtcccac cctagcgctc atccgcgtat ttgcccatca tggccggcgt
     1981 ttcctttcac ggatgccgtc gtgaccgttc tcctgcaatc gctctggccc ctgttcgcgc
     2041 tgatcgtcgg cggttacttc ctgcgccgtc acgactttcc cggcgaggcc ttctggccgg
     2101 ccgccgagcg tctcaactac ttcatcctgt tcccagccct gctgttcagc agcctggcca
     2161 ccgcgccgct ggacaacccg gcactgccgc gcctggccct ggcggtgctg ctcggcctcg
     2221 gcggcgcctg gctggcgctg ctgctggtgc gtcgcctgcg cggctggccc gcggggcgtt
     2281 tcggcgcgtt cacccagggc atcctgcgct tcaataccta cctcggcctg gccgcgatcg
     2341 gcagcctgca cggtcagccc ggcctggtgc tggccgcgct gctgctggcg ctgatggtgc
     2401 cctcggtcaa cgtgctgtcg gtgtggtcgc tcagcgccga ccgccaggtg ag
//
LOCUS       DATIHC010000316         3179 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_40574, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000316 DATIHC010000000
VERSION     DATIHC010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3179
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40574"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..154
                     /locus_tag="VLF16_05115"
     CDS             <1..154
                     /locus_tag="VLF16_05115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010208880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="short chain dehydrogenase"
                     /protein_id="HSX70296.1"
                     /translation="IYDEVAKGEFMILPHEQGRMAWAIKRQNPQIIYDEMTKMCEKMR
                     AKMGAA"
     gene            complement(331..3171)
                     /gene="rapA"
                     /locus_tag="VLF16_05120"
     CDS             complement(331..3171)
                     /gene="rapA"
                     /locus_tag="VLF16_05120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016817 - hydrolase activity, acting on
                     acid anhydrides [Evidence IEA];
                     GO_function: GO:0140658 - ATP-dependent chromatin
                     remodeler activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-associated protein RapA"
                     /protein_id="HSX70297.1"
                     /translation="MVQYQPGQRWISDSEAELGLGTILTSDGRLLTVLYPATGETRQY
                     SLRNAPLTRVRFAPGDEITHFEGWKLTVQEVEDVDGLLVYHGFDAQHAPYSLPETQLS
                     NFIQFRLASDRLFAGQIDPLNWFALRYHTLEHRSRLLQSSLWGLGGARAQPIAHQLHI
                     AREVADRIAPRVLLADEVGLGKTIEAGLVIHRQLLSGRAGRVLILVPENLQHQWLVEM
                     RRRFNLQVALYDAERFAESDASNPFEDTQLALVSLEWMKDSEKAQDAAFAAGWDLLVV
                     DEAHHLVWHPEKASEEYRLVEQLAEIIPGVLLLTATPEQLGLESHFARLRLLDPDRFH
                     DLEAFRAESAHYRPVAEAVQELLDDGRLSEQGHATIARFLGAEGEALLAAVTDGDSEA
                     AARLIRELLDRHGTGRLLFRNTRAAVQGFPERELHPYPLANPVEYLELPVGEHADLYP
                     EVSYQAQDGSEEARWWKFDPRVDWLIDTLKMLKRVKVLVICAHAETAMDLEDALRVRS
                     GIPATVFHEGMNILERDRAAAYFADEEFGAQVLICSEIGSEGRNFQFSHHLVLFDLPA
                     HPDLLEQRIGRLDRIGQKHVIQLHVPYLENSPQERLFQWYHQALNAFLSTCPTGNALQ
                     HQFGPRLLPLLEDTDESVWQALLSEAKAERERLEGELHSGRDRLLELNSGGAGNGQQL
                     VDDIHEQDDQFALPIFMEELFDAFGIDSEDHSENALVLRPSEKMLDASFPLGDDEAVT
                     VTYDRNQALAREDMQFLTWEHPMVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLEL
                     IYVSEVVAPRALQLGRYVPPVALRCLLDGNGNDLASKVAFDTLNDQLESVPRASANKF
                     VQAQRDVLAKQIGAAEAKVQPRHAARIEEARRRFTASLDEEIARMTALQAVNPTVRPA
                     EIDALRKQRESGLGFLDKAALRLEAIRVLVAG"
BASE COUNT          492 a         1014 c         1118 g          555 t
ORIGIN      
        1 catctacgac gaagtggcca agggcgaatt catgatcctg ccccacgagc aggggcgcat
       61 ggcctgggcg atcaagcggc agaacccgca gatcatctac gacgagatga ccaagatgtg
      121 cgagaagatg cgcgccaaga tgggcgccgc ctgatcgcag cgggtatgaa aaaggggcag
      181 ccgaggctgc ccctttttat tgcgtgctgt ttgtgggagc ggctagccgt aagctttcaa
      241 tcacggccga gcccgttccc attgtctggc gcgtagcccg gatgaaatcc gggtccgcac
      301 cactcccatt cccgtccggg ctagcggtta tcagcccgcc accagcacgc ggatcgcctc
      361 cagccgcagg gccgccttgt cgaggaagcc caggccgctc tcgcgctgct tgcgcagggc
      421 gtcgatctcg gccgggcgca ccgtcgggtt gaccgcctgc aacgccgtca tgcgtgcgat
      481 ctcctcgtcc agcgaggcgg tgaagcgccg gcgcgcttcc tcgatgcgtg cggcatggcg
      541 cggctgcacc ttggcctcgg ctgcgccgat ctgcttggcc agcacgtcgc gctgggcctg
      601 cacgaacttg ttggcgctgg cgcgcggcac gctctccagc tggtcgttga gggtgtcgaa
      661 ggccaccttg gaggcgaggt cgttaccgtt gccgtcgagc aggcagcgta gcgccaccgg
      721 cggcacgtag cggccgagct gcagcgcccg cggcgccacc acttcgctga cgtagatcag
      781 ctccagcagc acggtgccgg gcttgagcgc cttgttcttg atcagcgcca ccgcggtgtt
      841 gcccatggag ccggacagca ccaggtccat gccgccctgc accatggggt gttcccaggt
      901 gaggaactgc atgtcttcgc gggccagggc ctggttgcgg tcgtaggtga cggtcaccgc
      961 ctcgtcgtcg ccgagcggga agctggcatc cagcatcttc tcgctggggc gcagcaccag
     1021 ggcgttctcg gagtggtcct cgctgtcgat gccgaaggcg tcgaacagct cttccatgaa
     1081 gatcggcagg gcgaactggt cgtcctgctc gtggatgtca tcgaccagtt gctggccatt
     1141 gccggcacca ccggaattga gctccagcag gcggtcgcga ccgctgtgca gctcgccctc
     1201 cagacgctcg cgctctgcct tggcctcgct cagcagggcc tgccacacgc tttcgtcagt
     1261 gtcttccagc aggggcaaca ggcgcgggcc gaactggtgc tgcagtgcgt tgccggtcgg
     1321 gcaggtgctg aggaaggcat tcagcgcctg gtggtaccac tggaacaggc gctcctgcgg
     1381 gctgttctcc aggtacggca cgtgcagctg aatgacgtgt ttctggccga tacggtcgag
     1441 gcggccgatg cgttgttcga gcaggtccgg gtgtgccggc aggtcgaaca gcaccagatg
     1501 gtggctgaac tggaagttac ggccctcgga gccgatctcg gagcagatca gcacctgggc
     1561 gccgaattcc tcgtcggcga agtaggcggc ggcgcggtcg cgctcgagga tgttcatgcc
     1621 ctcgtggaac accgtggccg ggatgccgga acgcacgcgc agggcgtctt ccaggtccat
     1681 cgcggtttcg gcgtgggcgc agatcaccag caccttcacg cgcttgagca tcttcagagt
     1741 gtcgatcagc cagtccacgc gcgggtcgaa tttccaccag cgggcttctt cgctaccgtc
     1801 ctgtgcctgg tagctgactt ccgggtacag gtcggcgtgc tcgcccaccg gcaactccag
     1861 gtattccacc gggttggcca gcggataggg gtgcagttcg cgctccggga agccctgcac
     1921 ggcggcgcga gtgttgcgga acagcaggcg cccggtgcca tgacggtcga gcagctcgcg
     1981 gatcagccgc gccgcggctt cgctgtcgcc atcggtgacg gcggccagca gggcctcgcc
     2041 ctcggcgccg aggaaacggg cgatggtcgc gtggccctgt tcggacaggc ggccgtcgtc
     2101 cagcagctcc tgcaccgcct cggccaccgg tcggtagtgg gcgctctcgg cgcggaaggc
     2161 ttccaggtca tggaagcggt ccgggtcgag caggcgcagg cgggcgaagt ggctttccag
     2221 accgagctgc tcgggggtag cggtgagcag cagcacgcca gggatgatct cggccaactg
     2281 ctccaccagg cgatactctt cgctggcttt ttccgggtgc cagaccagat ggtgggcctc
     2341 gtcgaccacc agcaggtccc agccggcggc gaaggcggcg tcctgggcct tctcgctgtc
     2401 cttcatccac tccagcgaga ccagcgccag ctgggtgtcc tcgaaggggt tgctggcatc
     2461 gctctcggcg aagcgctcgg catcgtacag ggcgacctgc aggttgaagc ggcggcgcat
     2521 ttccaccagc cactggtgct gcaggttctc cggcaccagg atcagcaccc ggccggcgcg
     2581 gccggagagc agctggcggt ggatcaccag gccggcctcg atggtcttgc ccaggcccac
     2641 ttcgtcggcc agcagaacgc gcggggcgat gcggtcggcc acttcgcggg cgatgtgcaa
     2701 ctggtgggcg atgggttggg cacgggcgcc gcccaggccc cagaggctcg attgcagcag
     2761 gcgcgagcga tgttccagag tgtggtagcg cagggcgaac cagttcagcg ggtcgatctg
     2821 cccggcgaac aggcggtcgc tggccaggcg gaactggatg aaattggaga gctgggtttc
     2881 cggcaggctg tagggcgcat gctgggcgtc gaagccgtga tagaccagca ggccgtcgac
     2941 gtcctcgact tcctggacgg tgagcttcca gccttcaaag tgggtgatct cgtcgcccgg
     3001 ggcgaagcgc acccgggtca gcggcgcatt gcgcagtgaa tactggcggg tctcgccggt
     3061 ggccgggtag agcaccgtga gcaggcggcc gtcggaagtg aggatggtgc cgagaccgag
     3121 ttccgcctcg ctgtcgctga tccagcgttg ccccggttga tactgcacaa tgccactac
//
LOCUS       DATIHC010000317         2240 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28909, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000317 DATIHC010000000
VERSION     DATIHC010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2240)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2240)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2240
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28909"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(157..525)
                     /locus_tag="VLF16_05125"
     CDS             complement(157..525)
                     /locus_tag="VLF16_05125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017676863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rho termination factor N-terminal
                     domain-containing protein"
                     /protein_id="HSX70298.1"
                     /translation="MPRGSKDKYTDKQKRKAEHIEESYESRGVSKDEAEARAWATVNK
                     QSGGGERKGGSGQSKSPQAKQASRKSSARRAVATRKGTPRPGNKLEAMNKQELLDMAR
                     KRDIRGRSTMRKDELIAALR"
     gene            664..840
                     /locus_tag="VLF16_05130"
     CDS             664..840
                     /locus_tag="VLF16_05130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_252273312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PSPA7_2676 family Cys-rich small protein"
                     /protein_id="HSX70299.1"
                     /translation="MTLLCLISGCQWFPSCAEALRLGGSELLHECCSRCGTRRYRRPG
                     DDAPLFSLRPTRLR"
     gene            840..1328
                     /locus_tag="VLF16_05135"
     CDS             840..1328
                     /locus_tag="VLF16_05135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010678665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MgtC/SapB family protein"
                     /protein_id="HSX70300.1"
                     /translation="MEFSETLSVMLQQEFADLNNTQQMLRAGLRLFTAALLGGLLGFE
                     REAKGKAAGLRTHMLVTLGAAMFVMPLQMENAEHDALSRVVQGIAAGIGFLCAGTILK
                     GDRCSQIKGLTTSASLWFATAIGITVGLGHVGTAVLGVLFALIILHALPFLERPDKET
                     PR"
     gene            1341..1583
                     /locus_tag="VLF16_05140"
     CDS             1341..1583
                     /locus_tag="VLF16_05140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009619819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70301.1"
                     /translation="MFREFEHCTAWTDSMYSGAGFVGLIEYQPKRYGSEVTVLWVIDP
                     TCLCEREAENSAERMLQAILDIHPDRGVLYADGIPL"
     gene            1680..>2240
                     /locus_tag="VLF16_05145"
     CDS             1680..>2240
                     /locus_tag="VLF16_05145"
                     /inference="COORDINATES: protein motif:HMM:NF023324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maltotransferase domain-containing protein"
                     /protein_id="HSX70302.1"
                     /translation="MPSIHQADPHTSATHAAAVARIAIESVAPQVEGGRFAAKCLANE
                     ALEVTAVIFTDGHDQIAAALLWRGPDEAEWNRVPMRALGNDRWQAWMVPGALGRTEFC
                     IEAWQDVYATYHLELKKKYAAGVPVALEVQEGEQLLRRIADEAPEHLGERFDALLTRF
                     ADCESLEQRVAVLLDPLTGELMSKGEH"
BASE COUNT          338 a          775 c          726 g          401 t
ORIGIN      
        1 ccaaccatcc catcgacaag gagttgagcg tggtggatga atcgcagatc ggtggcggca
       61 tcggcctcga cgaggccgag ctggcgcgct cggccccgct cgacggcaag ccctggacag
      121 accaggtcac tcccgagcgg gacgagcgcg actgactcag cgcagcgcgg cgatgagctc
      181 gtccttgcgc atggtggagc gcccgcgaat gtcgcgcttg cgggccatgt ccagcagctc
      241 ttgcttgttc atcgcctcca gcttgttgcc cggccgcggc gtgcccttgc gggtggccac
      301 ggccctgcga gccgatgact tgcgcgaggc ctgcttggcc tgcgggctct tgctctggcc
      361 cgagcccccc ttgcgctcgc cgccgccgga ttgcttgttc accgtggccc aggcgcgggc
      421 ttccgcctcg tccttggaaa cgccgcggga ttcgtagctc tcctcgatgt gctcggcctt
      481 gcgcttctgc ttgtcggtgt acttgtcttt gctaccgcgt ggcatggtct tgtctccgat
      541 ggcgccgccg cagcggcctg tccagtagag aagcgcgtca ctgcggttag ttcgaaattt
      601 cctcaaaacc ttcggcgggg cgcagcggtc atttgctaga gaccctgtgg agcgaacccc
      661 gccatgactc tcctgtgcct gatttccggc tgccaatggt ttccgtcctg cgccgaagcc
      721 ctgcgtctcg gtggctccga gttgctgcac gagtgctgca gccgctgcgg cacgcgccgc
      781 taccggcgcc ccggtgacga tgcgccgctg ttcagcctgc gccccacgcg tctgcgctga
      841 tggagttcag cgaaaccctg tcggtgatgt tgcagcagga attcgccgac ctgaacaaca
      901 cccagcagat gctgcgtgcc gggctgcgcc tgttcaccgc ggcgctgctc ggcggcctgc
      961 tcggcttcga gcgcgaggcc aagggcaagg cggcgggcct gcgcacccac atgctggtca
     1021 ccctcggcgc ggcgatgttc gtcatgccgc tgcagatgga gaacgccgag cacgatgccc
     1081 tcagccgggt cgtccagggc atcgccgccg gcatcggttt tctttgcgcc ggcaccatcc
     1141 tcaagggcga ccgctgcagc cagatcaagg gtctcaccac ctcggcctcg ctctggttcg
     1201 ccaccgccat cggcatcacc gtcggcctgg gccatgtcgg caccgccgtg ctcggcgtgc
     1261 tgttcgccct gatcatcctg catgccctac cgttcctgga acggccggac aaagagacac
     1321 cgcgttaaga ggactgcctc atgtttcgcg aattcgaaca ctgcacggcc tggaccgact
     1381 ccatgtacag cggagccggt ttcgtcggcc tgatcgagta ccagcccaag cgctacggca
     1441 gcgaggtcac cgtgctctgg gtgatcgacc cgacctgcct ctgcgagcgc gaggccgaga
     1501 actccgccga gcgcatgctg caggccatcc tcgacatcca tccagaccgc ggagtgctct
     1561 acgccgacgg tatcccgctg taaggccgcc tgaacttttg tcttcgcgcc gggctcggag
     1621 acagaggggc ccgaggcctc cttccgttcc tcaatccagg cccaaggaga gccgtcgcga
     1681 tgccttcgat tcaccaggcc gacccgcata ccagcgccac ccacgccgcc gccgtcgcgc
     1741 gcattgccat cgagtccgta gcgccccagg tcgagggcgg ccgcttcgcc gccaagtgcc
     1801 tggcgaacga agcgctggag gtgaccgcgg taatctttac cgatggccac gaccagatcg
     1861 ctgccgcgct gctctggcgc ggccccgacg aggcggaatg gaaccgtgtg ccgatgcgcg
     1921 cactgggcaa cgatcgctgg caggcgtgga tggtgccggg cgcgctgggc aggacggagt
     1981 tctgcatcga ggcctggcag gatgtttacg ccacctacca tctcgagctg aagaagaaat
     2041 acgcggccgg cgtgccggtg gcgctggagg tgcaggaggg cgagcaactg ctgcgccgca
     2101 tcgccgacga agcgccggag catcttggcg agcgcttcga cgcgctgctg acgcgcttcg
     2161 ccgactgtga atccctggag cagcgcgtgg ccgtgctgct cgacccgctc accggcgagc
     2221 tcatgagcaa gggtgaacac
//
LOCUS       DATIHC010000318         6360 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42889, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000318 DATIHC010000000
VERSION     DATIHC010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6360)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6360)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6360
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42889"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..758
                     /locus_tag="VLF16_05150"
     CDS             <1..758
                     /locus_tag="VLF16_05150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009402614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSX70303.1"
                     /translation="RDLTERHEAQLHLDEVRAQLFQAQKMEALGQLTGGMAHDFNNLL
                     TVIIGSSDLALRSQDPERIRLLLESIHEAGRRGRELTRNLLTFARRREPEAHTLDLVS
                     TLEAPTGLFRQALPKHIELDLDVATVHPVRVDANQLEMALLNLIFNARDAMPDGGHIL
                     LRAENRRMSGEWENLHGDFVLISVTDNGPGIEPEIQARIFEPFFTTKKFGSGTGLGLS
                     QVYGFVRNAGGSVRVESQPGHGTRMTLYLPAAF"
     gene            841..2286
                     /locus_tag="VLF16_05155"
     CDS             841..2286
                     /locus_tag="VLF16_05155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012051902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HSX70304.1"
                     /translation="MLEQLKRLRSGIGGLDVLLKGGLVSGASYIVQGRPGSGKTILAN
                     QIAFNHVSEGGRVLVATLLAESHDRLFQFLSTLSFFEPQRVGAEIQFVSAFDTLQNEG
                     LDEVVRLLRREINRQQATLLIIDGVLNARSRADSQLDTKKFISELQGHAAFAGCTVLL
                     ITSARLDDGSPEHTMVDGVIEIGEELHGNRSVRRIQLRKTRGSAALSGLHECEITDRG
                     LVVYPRLESLYAQPSRPDSPDMRRVPCGVEGLDEKIEGGLPESSVTLLMGPSGVGKTS
                     MGLHFLSQCSSAEPSLHFGFYETPQRLRLKAHALGLDFPALEESGALHILWQPTTAGL
                     LDALGLNLLATVERLGIKRVLIDSLGGMARVTTNPARLIDFFGALLNELRARGVTVMA
                     TWEMRDLFGAEIIAPSHEMSSLVDSLMLMRFVEMNSELKRSLSILKMRDSAYNPSLLE
                     IVIGDQGLRLEKGFRHASAVLTGTATTTTDR"
     gene            2294..2659
                     /locus_tag="VLF16_05160"
     CDS             2294..2659
                     /locus_tag="VLF16_05160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008436466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX70305.1"
                     /translation="MATILIVDDEYLIADILGYALEDEGYMVVKASNGRRGLEVLDRE
                     RPALVITDFMMPLMDGVEFARAIRSRPATADLPILLMSGAHGSIGRATPDLFEDVFDK
                     PFEVDQIIARVRELLGSAI"
     gene            complement(2729..2887)
                     /locus_tag="VLF16_05165"
     CDS             complement(2729..2887)
                     /locus_tag="VLF16_05165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003109182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3309 family protein"
                     /protein_id="HSX70306.1"
                     /translation="MTLGTILLIVLILLLIGAIPAWPHSRSWGYGPSGGLGLVVVILL
                     VLLLLGYV"
     gene            3400..5670
                     /locus_tag="VLF16_05170"
     CDS             3400..5670
                     /locus_tag="VLF16_05170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017244929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSX70307.1"
                     /translation="MTDRTPDTLADAVARCADEPIHVPGSIQPHGFLLVVGEPDLRVL
                     QASQNVAEWIGEEAQGLLGRQLAELIGDSDLPQRLAAVSGDDRNPFHVGDVGLRLGAA
                     AGQSFALMAHRNDGQLILEFERTGSAREAYGTLYPLMRTFVAELHAAESLESICQLAV
                     NELRRITGFGRIKAYRFDQEGNGEVLAEHAEPGYASYLGHCFPASDIPAQARRLYREN
                     LIRVIPDANYQPSPLTPQLNPVSGAPLDLSFASLRSVSPVHLQFMRNMGTLASMSVSI
                     VVRDQLWGLISCHDAEARQVSHQSRTACELLARILALQIDASESDLLAQRKLERRHLI
                     VRLLAGMADRDSVTEGFKSLPDVVLAFAAAEGAAVVSADSCVSVGEVPAREQIIELAK
                     WIAARESGPLFSSDNLSRDVPQLPALAGHSAGVLAVSISNLHPHYLIWFRQERVRTIK
                     WAGQPQKQRDEISGALTPRHSFETWREVVRGFCAPWEEAEREGALELRNAVLGIVLRK
                     AEEMAQLAGELRESNKELESFSYSVSHDLRAPLRHIAGYTELLSEMEGGQLSERGQRF
                     LGNIGDAARFAGTLVDNLLSFSQMGRSALHLSDVDLGALVASVRDEMRPDYESREVEW
                     EILPMPVVVADASFIHMVLRNLIGNALKYTGTRERAHIEIGAHQRPDETVVYIRDNGV
                     GFDMQYANKLFGVFQRLHRMEEFEGTGIGLASVRRIVERHGGRVWADGRVDQGATFFF
                     ALPHLTYTETANDRKD"
     gene            5671..6147
                     /locus_tag="VLF16_05175"
     CDS             5671..6147
                     /locus_tag="VLF16_05175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019340934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX70308.1"
                     /translation="MLKPILLVEDNPHDLELTLVALERSQLANDVVVKRDGAEALDYL
                     LRRGEHQSRDDGNPAVLLLDLKLPKVDGLEVLKTVRETPSLRSIPVVMLTSSREEPDL
                     VRAYEMGVNAYVVKPVDFKDFVAAISDLGIFWAVLNEPPPGSLRLKRTRRVDEPND"
     gene            6177..>6360
                     /locus_tag="VLF16_05180"
     CDS             6177..>6360
                     /locus_tag="VLF16_05180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70309.1"
                     /translation="MPASQNISVLFIEDSSHDAELAQLALERSGFVLDIELVYSHAGV
                     VEALQRREFDLILADFI"
BASE COUNT         1130 a         2191 c         2009 g         1030 t
ORIGIN      
        1 cccgtgacct gaccgagcgc cacgaggcac agctgcatct ggatgaggtg cgggcgcagc
       61 tattccaggc gcagaagatg gaggcgctcg gccagctcac cggtggcatg gcgcacgact
      121 tcaacaacct gctcacggtg atcatcggct cgagcgacct ggccctgcgc agccaggacc
      181 cggagcgcat ccgcctgctg ctcgagagca ttcacgaggc aggtaggcgc ggacgcgaac
      241 tgacgcgcaa cctgctgacc ttcgcgcgcc gccgcgaacc cgaggcccac acgctcgacc
      301 tggtgtcgac cctggaggcg cccaccgggc tgttccgcca agcgctgcca aagcatatag
      361 agctcgatct ggatgtggcc accgtgcacc ccgtgcgggt cgatgccaac caactggaaa
      421 tggccctgct caacctgatc ttcaacgccc gcgatgccat gccggacggc ggccacattc
      481 tgctgcgcgc cgagaaccgc aggatgagcg gcgaatggga aaacctgcac ggcgacttcg
      541 tgctgatctc cgtgaccgac aacggtcccg gcatcgaacc ggagatccag gcgcgcatct
      601 tcgagccctt cttcaccacc aagaaattcg gcagtggtac cggcttgggc ctcagccagg
      661 tgtacggatt cgtgcgcaac gcaggcggtt cggtacgggt cgagagccag cccgggcacg
      721 gcacccgcat gaccctctat ctgccggccg ccttctagcc catggccggc gagcagccgt
      781 gggagtaaag tgcccgcatc agcggcgcgt cggtgcgtcg cccctcagag agatggaagg
      841 atcttggaac agttaaaacg ccttcgtagc ggcattggcg gcctcgacgt cctgttgaag
      901 ggaggcctgg tctccggcgc ctcgtacata gttcagggcc ggccaggctc gggcaagacc
      961 atcctggcca accagatcgc cttcaaccac gtcagcgaag gcggccgagt gctggtggcc
     1021 acgctgctgg ccgagtccca cgaccggctg ttccagttcc tctccaccct cagcttcttc
     1081 gagccgcagc gggtcggtgc cgagatccag ttcgtcagcg ccttcgatac cctgcagaac
     1141 gagggcctcg acgaggtggt gcgcctgctg cgccgggaga tcaaccgcca acaggccacc
     1201 ctgctgatca tcgacggcgt gctcaacgcc cgctcgcgcg ccgactccca actggacacc
     1261 aagaaattca tctccgagct gcagggccac gccgccttcg ccggctgcac cgtgctgctg
     1321 atcaccagcg cccgcctgga tgacggcagc cccgaacaca ccatggtcga cggcgtcatc
     1381 gagatcggcg aggaattgca cggcaaccgc tcggtgcgtc gcatccagct gcgcaagacc
     1441 cgtggcagcg ccgcgctctc cggcctccac gaatgcgaga tcaccgaccg cggcctggtc
     1501 gtctatccgc gcctcgagag cctctatgcg cagccttcgc ggcctgacag ccctgacatg
     1561 cgccgcgtgc cctgcggcgt cgaaggtcta gacgaaaaga tcgagggcgg cctgccggag
     1621 tcttcggtca ccctgctgat gggcccgtcc ggcgtcggca agaccagcat gggtctgcac
     1681 ttcctgtccc agtgcagctc ggcggagcca agcctgcatt tcggcttcta cgagacgccc
     1741 caacgcctac gcctgaaggc ccacgcactg gggctcgact tccccgcgtt ggaggaaagc
     1801 ggcgcgctgc atattctctg gcagcccacc accgcgggcc tgctcgacgc tctcggcctc
     1861 aacctactcg ctacggtcga gcgcctcggt atcaagcgcg tactaattga cagcctcggc
     1921 ggcatggcgc gggtgacaac caatccggct cgcctgattg atttcttcgg cgcgttactg
     1981 aatgaattgc gcgcccgcgg cgtaaccgtg atggcgacct gggagatgcg cgacctgttc
     2041 ggtgccgaga tcatcgcgcc ctcacatgag atgtccagct tggtcgacag cctcatgctg
     2101 atgcgcttcg tggaaatgaa ttctgaatta aaacgctcgt tgtcgattct caagatgaga
     2161 gacagcgcct acaacccctc ccttctggaa atcgtgatcg gcgatcaggg ccttcggctc
     2221 gagaagggtt tcagacatgc cagcgcggtg ctaaccggta ccgcgaccac tacgacggac
     2281 cgatgagcta agcatggcaa ccatcctgat agtcgatgac gaatatctga tcgcggatat
     2341 tctcggctac gcgctggagg atgaaggcta catggtggtc aaggcgagca atggccggcg
     2401 cgggctggaa gtactcgacc gcgagcggcc cgcactggtg atcaccgact tcatgatgcc
     2461 gctgatggac ggcgtggaat tcgcgcgtgc cattcgcagc cgcccggcga ccgccgacct
     2521 gccgatcctg ctcatgagtg gggctcatgg cagcatcggg cgagctaccc cggacctctt
     2581 tgaggatgta ttcgacaaac ccttcgaagt ggaccagatc atcgccaggg tccgcgagct
     2641 actcggctcg gctatctgac cgccttttac gcgtttggat gggcaggcag ccggtggagg
     2701 ccgccccgca cgggggcggc gctcactgct agacgtaacc tagcaataac aaaaccaaca
     2761 gaattactac caccaggccg aggccgccgg acgggccgta gccccaggag cggctgtgcg
     2821 gccacgccgg aatggctccg atcagcagca ggatcaggac gatcagcagt atggttccca
     2881 gggtcatgac gagttcctcg cagtcgtggt cgcggcgcgc caacaggcat cgcccgtcta
     2941 gccaggccat tccaggcctc acgaaaatat cgactcggcg gacgcagcgg cagttcggac
     3001 tatttgtccg gtgcgagaac gccttcgcat ccgcgcagcg agcggaccag gttcgctctt
     3061 ccaccctgcg acacggtcac cagcgccgcg ccgaccaccc ggtgcatgcc ggccaatgcc
     3121 ctccacagag gcccgaacag acggccgtgg cctgcctcgc gtccttggcg cagcggccgt
     3181 ttgcaggtaa attggcagcc ctcccgcgct caatttcgtg tcggcttttc ggccgccgtt
     3241 tcgcttcgcg gaagactccg ggtctgcgcc gtttgcaagc ggagaagagg ttctgaaaca
     3301 gacatgggcc gtccggcttc gccgcggccc gcagcagttt cgcaacgacc tgccggccat
     3361 ggttgaactg cacccaggcc gcagcccgaa ggacagagga tgacagaccg cacccccgac
     3421 acgctggccg acgcggtcgc gcgctgcgcc gacgagccga tccacgttcc cggcagcatc
     3481 cagccgcatg gctttctcct cgtcgtcggc gagcccgacc tgcgcgtgct gcaagccagc
     3541 cagaacgtcg ccgaatggat tggcgaagag gcgcagggcc tgctgggccg gcaactggcc
     3601 gagctgatcg gcgacagcga tctgccgcaa cgcctggcgg cggtgtccgg cgatgaccgc
     3661 aaccccttcc atgtcggcga cgtcggcttg cgtctggggg ccgccgccgg ccagtcgttc
     3721 gccctgatgg cgcaccgcaa cgacggacag ctcatcctcg agttcgaacg caccggcagc
     3781 gcccgcgagg cctacggcac gctgtacccg ctcatgcgca ccttcgttgc cgagctgcac
     3841 gccgccgaga gcctcgaatc gatctgccag ctggcggtca acgagctgcg tcgcatcacc
     3901 ggtttcggcc ggatcaaggc ctaccgcttc gaccaggaag gcaatggcga ggtgctcgcc
     3961 gaacatgccg aacccggcta cgccagctac ctcggccact gtttccccgc ctcggacatt
     4021 ccggcccagg cccggcgcct gtatcgcgag aatctgatcc gggtgatccc ggatgccaac
     4081 tatcaaccct cgccgctgac cccgcagctc aaccccgtca gcggcgcccc gctggacctc
     4141 agtttcgcct ccctgcgcag cgtgtcgccg gtgcacctgc agttcatgcg caacatgggc
     4201 acgctggcct cgatgtcggt ctccatcgtg gtccgcgatc agctctgggg cctgatctcc
     4261 tgccacgacg ccgaagcccg ccaggtcagc caccagagcc gcaccgcctg cgaactgctg
     4321 gctcgcatcc tggcgctgca gatcgacgcc agcgagagcg acctgctggc ccagcgcaag
     4381 ctggagcgcc gccacctgat cgtccgccta ctggccggca tggccgaccg tgacagcgtg
     4441 accgagggtt tcaagagcct gccggacgtg gtcctggcat tcgccgccgc cgagggcgcc
     4501 gcggtggtca gcgccgacag ctgcgtcagc gtcggcgagg tgccggcccg cgagcagatc
     4561 atcgagctgg ccaagtggat cgccgcgcgc gaatcggggc cgctgttcag cagcgacaac
     4621 ctgagccgcg acgtaccgca gctgccggcg ctggccgggc acagcgccgg cgtgctggcg
     4681 gtgtcgatct cgaacctgca cccgcactac ctgatctggt tccgccagga gcgggtgaga
     4741 accatcaagt gggccggaca gccgcagaag cagcgggacg aaatcagcgg cgcgctgacc
     4801 ccgcgccaca gcttcgagac ctggcgcgag gtggtacgtg gcttctgcgc cccctgggaa
     4861 gaggccgagc gcgagggcgc cctcgagctg cgcaacgccg tgctcggtat cgtcctgcgc
     4921 aaggccgagg agatggccca gctggcgggt gagctgcgcg agagcaacaa ggagctggag
     4981 tccttctcct acagcgtttc ccacgacctg cgtgcgccac tgcggcacat cgccggctac
     5041 accgaactgc tcagcgaaat ggaaggcggc cagctgagcg aacgcggcca gcgcttcctg
     5101 ggcaacatcg gcgacgccgc gcgcttcgcc ggcaccctgg tcgacaacct gctgagcttc
     5161 tcgcagatgg gccgctcggc gttgcacctg tccgacgtcg acctcggcgc gctggtggcc
     5221 tccgttcgcg acgagatgcg cccggactac gagagccgcg aggtcgagtg ggagatcctg
     5281 ccgatgccgg tggtggtcgc cgacgcgtcc ttcatccaca tggtgctgcg caacctcatc
     5341 ggcaacgcgc tcaagtacac cggtacgcgc gagcgtgcac atatcgaaat aggcgcccat
     5401 caacgacctg acgaaacggt ggtctacatc cgcgacaacg gtgtgggctt cgacatgcag
     5461 tacgccaaca agctgttcgg cgtgttccag cgcctgcacc ggatggagga gttcgaaggc
     5521 acgggcatcg gcctggccag cgtgcgccgg atcgtcgagc gccatggcgg ccgggtctgg
     5581 gccgatggcc gcgtcgacca gggcgcgacc ttcttcttcg cgctgcctca cctgacctac
     5641 accgaaacgg cgaacgatcg gaaagactag atgctcaaac ccatacttct cgttgaagac
     5701 aacccccacg atctggagct gacgctggtg gcgctggagc gcagccagct ggccaatgat
     5761 gtggtggtca agcgtgatgg cgccgaggcg ctggattacc tgctgcgccg cggcgaacac
     5821 cagagccgcg acgacggcaa tcccgccgtg ctgctgctcg acctgaagct gcccaaggtc
     5881 gatggcctgg aggtgctcaa gacggtccgc gagacgccct cgctgcgcag catccccgtg
     5941 gtcatgctga cctcctcgcg ggaagagccg gacctggtgc gcgcctacga gatgggcgtc
     6001 aacgcctacg tggtgaagcc ggtggatttc aaggacttcg tcgccgcgat ctccgatctc
     6061 ggcatcttct gggcggtgct caacgagccg ccgcccggct cgctgcgtct gaagcgcacg
     6121 cgccgcgtcg acgagccgaa cgactgactc ccgcaaccct cgccgcagga aggccaatgc
     6181 ccgcgtcaca gaacatcagt gtcctgttca tcgaggacag ctcccacgat gcggagctgg
     6241 cccagctggc gctggagcgc agcggcttcg tcctcgacat cgagctggtc tacagccacg
     6301 ccggcgtggt cgaggccctg cagcggcgcg agttcgacct gatcctggcc gacttcatcc
//
LOCUS       DATIHC010000319         2421 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10217, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000319 DATIHC010000000
VERSION     DATIHC010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2421)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2421)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2421
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10217"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..245)
                     /locus_tag="VLF16_05185"
     CDS             complement(<1..245)
                     /locus_tag="VLF16_05185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248988.1"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HSX70310.1"
                     /translation="MLRLPIIGVTACTKQVGLHPNHIVGDKYVRAVAVGAEGLPLVIP
                     ALGELIDQDTLLASVDGLVFTGSPSNVEPHHYSGPASA"
     gene            521..1900
                     /locus_tag="VLF16_05190"
     CDS             521..1900
                     /locus_tag="VLF16_05190"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase family protein"
                     /protein_id="HSX70311.1"
                     /translation="MSVPPRAVQLNEANAFLKEHPEVQFVDLLIADMNGVVRGKRIER
                     NSLHKVYEKGINLPASLFALDINGSTVESTGLGLDIGDADRICFPIANTLCNEPWQKR
                     PTAQLLMTMHELDGKPFFADPREVLRQVVAKFDEMNLRICAAFELEFYLIDQENVNGR
                     PQPPRSPMSGKRPISTQVYLIDDLDEYVDCLQDMLEAAKEQGIPADAIVKESAPAQFE
                     VNLHHVEDAIKACDHALLLKRLIKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDK
                     TTGKNIFTSDDPQENAALRHAIGGVLETMPASMAFLCPNVNSYRRFGAQFYVPNAPSW
                     GLDNRTVAVRVPTGSADAVRIEHRVAGADANPYLMMSAILAGIHHGLTNQVDPGEPIE
                     GNSYEQLEQSLPNNLRDALRELDDSEVLNKYISPDYIDIFVACKEAELQEFETTISDL
                     EYNWYLHTV"
     gene            2021..>2421
                     /locus_tag="VLF16_05195"
     CDS             2021..>2421
                     /locus_tag="VLF16_05195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009315019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HSX70312.1"
                     /translation="MFRILAPLLLALSPGLAAAADSIRVYNWNDYIAPQVLADFTKAT
                     GIQVEYHTYASAEELNEILASGESIDIAVPSQNDLPPLIEQGRLQPLDLTRLPNRKHL
                     DKHLLSKLAAVDPQNRYAVPYLWGAVGLAINT"
BASE COUNT          502 a          801 c          703 g          415 t
ORIGIN      
        1 gcactggccg ggccactata gtgatggggt tcgacgttgg acggcgagcc ggtgaagacc
       61 aggccgtcga cgctggccag cagggtgtcc tgatcgatca gctcgcccag cgccggaatc
      121 accaggggca gtccttcggc ccctaccgcc accgcgcgga catacttgtc gccgacgatg
      181 tggttgggat gaaggcccac ctgcttggtg caggcggtga cgccgatgat cggcaggcgc
      241 aacatgggac acccgttctt atgctgttgt caggtgaggc cgagattagc cttgttcaat
      301 ttattacaca atagggctgt aaaaaattga acacgcccca ctgagcagca ggaaccacgg
      361 ggccgcgcga cgggttagag atgcccaaaa tgccccaaaa ctggccatcg agccccgttt
      421 cggggcagaa tgagccgcta ttgacagccc aagggtgatt gagattgact cgggttgtgc
      481 gattgcatga ttgatatttt taacaaaaaa ggtgtgcatc atgtcggtac ccccgcgtgc
      541 cgttcagctc aacgaggcta acgcgttcct taaggaacat cccgaggtcc agttcgttga
      601 ccttctgatt gcggatatga atggggtggt gcgcggcaag cgcatcgaac ggaacagcct
      661 gcacaaggtg tatgaaaagg gcatcaacct gcccgcctcg ctgttcgccc tcgacatcaa
      721 cggttccacc gtcgaaagca cgggcctcgg cctggacatc ggcgacgccg accgcatctg
      781 cttccccatc gccaataccc tgtgcaacga gccctggcag aagcgcccca ccgcgcagct
      841 gctgatgacc atgcacgagt tggacggcaa gccgttcttc gccgacccgc gcgaagtgct
      901 gcgccaggtc gtggcgaagt tcgacgagat gaatctgcgc atctgcgccg cgttcgaact
      961 ggagttctac ctgatcgacc aggagaacgt gaacggccgt ccgcagccgc cgcgctcgcc
     1021 gatgtcgggc aagcgtccga tctccaccca ggtgtacctg atcgacgacc tcgacgagta
     1081 cgtcgactgc ctgcaggaca tgctcgaagc cgccaaggaa cagggcatcc cggccgacgc
     1141 catcgtcaag gaaagcgccc cggcacagtt cgaggtcaac ctgcatcacg tggaggatgc
     1201 catcaaggcc tgcgaccacg cgctgctgct caagcgcctg atcaagaaca tcgcctacga
     1261 tcatgagatg gacaccacct tcatggccaa gccctacccg ggccaggcgg gcaacggcct
     1321 gcacgtgcac atctcgctgc tcgacaagac caccggcaag aatatcttca ccagcgatga
     1381 tccccaggag aacgccgcac tgcgccatgc gatcggcggt gtcctggaga ccatgccggc
     1441 gtccatggcc ttcctctgcc ccaacgtcaa ctcgtaccgc cgcttcggcg cgcagttcta
     1501 tgtgcccaat gcgccgagct ggggcctgga caaccgcacc gtggccgtcc gcgtaccgac
     1561 cggcagcgcc gatgccgtgc gcatcgagca tcgcgtggcc ggcgccgatg ccaacccgta
     1621 cctgatgatg tcagcgatcc tcgccggtat tcaccatggc ctgaccaacc aagtcgatcc
     1681 cggcgagccg atcgaaggca actcgtacga gcagctggaa cagagcctgc cgaacaacct
     1741 gcgcgatgcc ctgcgcgagc tggacgacag cgaggtgctg aacaagtaca tcagcccgga
     1801 ctacatcgac atcttcgtcg cgtgcaagga agccgaactg caggaattcg agaccacgat
     1861 ctcggatctg gaatacaact ggtacctgca caccgtctga cgcaataccc tgacgccggc
     1921 ccgaagccgg cgtcgccttt tctactgccg ccaacctcgc cacttcgcga catcccgcga
     1981 agtggcgaag ccgtgccaat catttgccaa ggaggtcgtc atgtttcgca ttcttgctcc
     2041 cttgctgctg gctctctcgc ccgggctggc ggctgccgcc gacagcatcc gcgtgtacaa
     2101 ctggaacgat tacatcgcgc cacaggtgct ggcggacttc accaaggcca ccggcatcca
     2161 ggtggagtac cacacctatg cctcggccga ggaactgaac gagatcctcg ccagcggcga
     2221 gagcatcgac atcgccgtgc cctcgcagaa cgatctgccg ccgctgatcg agcagggccg
     2281 cctgcagcct ctcgacctga cccggctgcc caatcgcaag catctggaca agcacctgct
     2341 gagcaagctg gcggccgtcg acccgcagaa tcgctacgcg gtgccctacc tgtggggcgc
     2401 cgtcggcctg gccatcaaca c
//
LOCUS       DATIHC010000320         2876 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_14549, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000320 DATIHC010000000
VERSION     DATIHC010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2876
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14549"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1566
                     /gene="tssM"
                     /locus_tag="VLF16_05200"
     CDS             <1..1566
                     /gene="tssM"
                     /locus_tag="VLF16_05200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015503132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system membrane subunit TssM"
                     /protein_id="HSX70313.1"
                     /translation="VVYRMLRDQARSLPEYRISQALGAQAPLLLGSDYAIPGLYTQKG
                     YQQFFVAQGLGLVRDILEDNWVLGEGNQLSDRDLGRLMVELEQLYFRDYANYWGEAIA
                     QLGLEPIGNTAQGITLLTALTAANSPLLQVLVEVRENTRFDLPAAADQADDLAAQAKL
                     GKQGKLAAAAAGKGLDAIAKSLPDTARRALQRRFEPLHRLLDDSNGAGPELAATLQAL
                     NALQLQLSGMAHASSPEQAAFEMAKARMAGQPDAINQVRGTTARLPQPVGNWLALIAD
                     DSWQLVLNDAYGYLNKRYRNELYGFYKESLLKRYPFSAKSDSDVAIADFREFFKDDGV
                     ADAFVDRYLKAFVSDSDGQYQLRRLDGQGLPLSPTFLAQMNRTQVIRRSFFAENPAEP
                     LVLFKLEPFALDYSLNRADFKFGGQQLEYRHGPIVASAFRWPAEGASERTSLVLEEQG
                     GRRVGIEKDSGPWALFRLLDMMKVEQHSGRDVLLLKANLDGLQAKYLLHSQRSPNPFD
                     ASLLRQFKLPATL"
     gene            1566..2297
                     /locus_tag="VLF16_05205"
     CDS             1566..2297
                     /locus_tag="VLF16_05205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003087627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family serine/threonine-protein
                     phosphatase"
                     /protein_id="HSX70314.1"
                     /translation="MKVAQRLWSSAGRSDTGKVRERNEDAFLDQPQRGLWVVADGMGG
                     HQAGDLASRLIVESLAELPEGLDFEDRLDALRDCLHRLNRHLSLGLTLTAATPDLLVG
                     STVVALLAEGTRAACVWAGDSRCYLLRGRQLFQLTRDHSLLQQLVDERGMAPAEAARQ
                     PGAHALTRAIGAAEALQLDTLELECLPGDVFLLCSDGLYQDLDHDLITAALLRPSPQL
                     ALQRLFDLALQGTARDNLSAVVVNR"
     gene            2294..>2876
                     /locus_tag="VLF16_05210"
     CDS             2294..>2876
                     /locus_tag="VLF16_05210"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003298394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HSX70315.1"
                     /translation="MNAEAKVASADLTVMAGATARAPRPLPKDLPELLGGRYRIERLL
                     GVGGMGAVYRARDLLREQFGEPQPWVALKTLSEDFAEYPDASALLYSEFALTARLSHR
                     NLVRFYSFDVDPTCERAFITMELLKGNTLDLVLHQYPSGLPWSEAQRVVVDLLEALRY
                     AHDQGVLHGDLKPSNLMLGDDDIRLFDFGLGQAR"
BASE COUNT          470 a         1093 c          916 g          397 t
ORIGIN      
        1 gtggtctacc gcatgctccg cgaccaggcc cgcagcctgc ccgagtaccg catctcccag
       61 gcactcggcg cccaggcgcc gctgctgctg ggcagcgact acgccatccc cggcctgtac
      121 acgcagaagg gctaccagca gttcttcgtc gcccagggcc tcggcctggt gcgcgacatc
      181 ctcgaagaca actgggtgct gggcgaaggc aaccagctca gcgaccgcga cctcggtcgc
      241 ctgatggtgg agctggagca gctgtatttc cgcgactacg ccaactactg gggcgaggcc
      301 atcgcccagc tgggcctgga gccgatcggc aacaccgccc agggcatcac cctgctcacc
      361 gccctgaccg cggccaactc gccgctgctg caggtgctgg tggaagtgcg cgaaaacacc
      421 cgcttcgacc tgccggccgc cgccgaccag gccgacgacc tggccgccca ggcgaagctc
      481 ggcaagcagg gcaagctggc cgccgccgcg gccggcaagg gcctggacgc catcgccaag
      541 agcctgccgg acaccgcccg ccgcgccctg cagcggcgct tcgagccgct gcaccgcctg
      601 ctcgacgaca gcaacggcgc cggccccgag ctggccgcca ccctgcaggc actgaacgcc
      661 ctgcagctgc agctgagcgg catggcccac gccagttcgc cggaacaggc cgccttcgag
      721 atggccaagg cacgcatggc cggccagccg gacgcgatca accaggtacg cggcaccacc
      781 gcacgcctgc cgcagccggt gggcaactgg ctagcgctga tcgccgacga cagctggcag
      841 ctggtactca acgatgccta cggctacctg aacaagcgct accgcaacga gctgtacggc
      901 ttctacaagg agtcgctgct caagcgctat ccgttcagcg ccaagagcga cagcgacgtg
      961 gccatcgccg acttccgcga gttcttcaag gacgacggtg tggccgacgc cttcgtcgac
     1021 cgctacctga aggccttcgt cagcgacagc gacggccagt accagctgcg ccgcctggac
     1081 ggccagggac tgcccctgtc gccgaccttc ctggcgcaga tgaaccgcac ccaggtgatc
     1141 cgccgcagct tcttcgccga gaacccggcc gagccgctgg tgctgttcaa actggagccc
     1201 ttcgctctcg actacagcct caaccgcgcc gacttcaagt tcggcggtca gcagctggaa
     1261 taccgccacg gcccgatcgt cgccagcgcc ttccgctggc cggccgaggg cgcgagcgag
     1321 cgcaccagcc tggtcctcga ggaacagggc ggccgccgcg tcggcatcga gaaggacagc
     1381 ggaccctggg cgcttttccg cctgctcgac atgatgaagg tggaacagca cagcggccgc
     1441 gacgtgctgc tgctcaaggc caacctcgac ggcctgcagg ccaagtacct gctgcacagc
     1501 cagcgctcgc cgaacccgtt cgatgccagc ctgctgcgcc agttcaagct gccggcgacc
     1561 ctctgatgaa ggtcgcccaa cgcctctggt ccagcgccgg gcgcagcgac accggcaagg
     1621 tgcgcgagcg caacgaggac gcctttctag accagccaca gcgcggcctg tgggtggtcg
     1681 ccgatggcat gggcggccac caggccggcg acctggccag ccggctgatc gtcgagagcc
     1741 tggccgagct gcccgagggt ctcgacttcg aggatcgcct ggatgccctg cgcgactgcc
     1801 tgcaccggct caaccgccac ctcagcctgg gcctgacgct gaccgccgct acccccgacc
     1861 tgctggtcgg cagcaccgtg gtggcgctgc tcgccgaggg cacacgcgcc gcctgcgtgt
     1921 gggccggcga cagccgctgc tacctgttgc gcgggcgcca gttgttccag ctgacgcgcg
     1981 accattcgct gctgcagcaa ctggtcgacg aacgcggcat ggccccggcc gaagccgcgc
     2041 gccagcccgg cgcccacgcc ctgacccggg ccatcggcgc cgccgaggcg ctgcaactgg
     2101 acaccctcga actggaatgc ctgcccggcg acgtgttcct gctgtgcagc gatggcctct
     2161 atcaggacct cgaccacgac ctgatcaccg ccgccctgct gcggcccagt ccgcagctgg
     2221 cgctgcagcg tctgttcgac ctggccctgc agggaacggc ccgcgacaac ctcagcgccg
     2281 tggtggtcaa ccgatgaatg ccgaagccaa ggtcgccagc gccgacctca ccgtcatggc
     2341 cggcgccacc gcccgcgcgc cgaggccact gcccaaggac ctgccggagc tgctcggcgg
     2401 ccgctaccgc atcgaacgcc tgctcggcgt cggcggcatg ggcgccgtgt accgcgcccg
     2461 cgacctgcta cgtgagcagt tcggcgagcc gcagccctgg gtggcactga agaccctcag
     2521 cgaggacttc gccgagtacc cggacgccag cgccctgctc tacagcgagt tcgccctcac
     2581 cgcgcggctc agccaccgca acctggtgcg cttctacagt ttcgacgtgg acccgacctg
     2641 cgagcgcgcc ttcatcacca tggagctgct caagggcaac accctcgacc tggtgctgca
     2701 ccagtatccc agcggcctgc cctggagcga ggcgcagcgg gtcgtcgtcg atctgctcga
     2761 ggcgctgcgc tatgcccacg accagggcgt gctgcacggt gacctcaagc cgagcaacct
     2821 gatgctcggt gacgacgaca tccgcctgtt cgacttcggc ctcggccagg cccgcg
//
LOCUS       DATIHC010000321         1753 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_16773, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000321 DATIHC010000000
VERSION     DATIHC010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1753
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16773"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..910
                     /locus_tag="VLF16_05215"
     CDS             <1..910
                     /locus_tag="VLF16_05215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003913 - DNA photolyase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DASH family cryptochrome"
                     /protein_id="HSX70316.1"
                     /translation="HLPALPEGFGSHVGALPSLSQLGLGEPLAEPNSAFPFAGGEPAG
                     QARLRDYLWLGQGVRQYLETRDGMVGSEYSSKLSPWLANGSLSARRVAAELRRHESQY
                     GQNDSTRALWQQLLWRDFFRRTLARHGDALFRSAGLKATARAPTHLDERFERWCQGRT
                     GMPLVDANMRELAATGYLSARGRQIVATYLVGDLRQDWRHGAAWFEEHLLDYDPASNW
                     GNWAYLAGVASDPRRRSLANALRQARHYDPEATYVSLWLPELRSVPPQLRHTPFLLPH
                     LQLDAMGYPRLEHIPEAWKPYLPSAA"
     gene            complement(919..>1753)
                     /locus_tag="VLF16_05220"
     CDS             complement(919..>1753)
                     /locus_tag="VLF16_05220"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003242180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HSX70317.1"
                     /translation="LQQLNERLAAFLGTLAEAHEGYSESVESSRNFNQELREQVSDLQ
                     ASVQEAADLPSLKRALEQRLDGLLGTVSDHQRQREGREEEVGKRLQALSQKVADMERE
                     AQGFREHIEEQRQKALVDPLTGLANRAGWAERLDLELARWRRYGGELLLAVLDVDHFK
                     RINDGYGHLAGDKVLKIIAGELARRLRKTDFLARFGGEEFVLLVPSTPLDGGQQLLET
                     LRAAIEACPFHFRGEPVTITLSAGLTAFMVGESADAAFARADQALYRAKAAGRNCVEL
                     G"
BASE COUNT          245 a          655 c          591 g          262 t
ORIGIN      
        1 gcacctgccg gcgctgccgg aaggcttcgg cagccacgtc ggcgcactgc ccagcctgtc
       61 ccagctcggc ctgggcgagc cgctcgccga gcccaacagc gccttcccct tcgccggcgg
      121 cgagccggcc ggccaggcgc ggctgcgcga ctacctgtgg ctgggccagg gcgtgcgcca
      181 gtacctggag acccgcgacg gcatggtcgg cagcgaatac tcgtccaagc tctcgccctg
      241 gctggccaac ggcagcctgt cggcgcgcag ggtggcggcc gaactgcgtc gccacgagtc
      301 gcagtacgga cagaacgatt cgacccgcgc gctctggcaa cagctgctgt ggcgcgactt
      361 cttccgccgc accctggcgc gccacggcga cgcgctgttc cgcagcgctg ggctgaaggc
      421 cacggcacgc gcgccaacgc acctggacga gcgcttcgag cgctggtgcc agggccgcac
      481 cggtatgcca ctggtggacg ccaacatgcg cgagctcgcg gccaccggct atctgtccgc
      541 ccgcggtcgc cagatcgtcg ccacctacct ggtcggcgac ctgcgacagg actggcgcca
      601 cggcgccgcc tggttcgagg agcatctgct ggattacgac cccgcgagca actggggcaa
      661 ctgggcctac ctcgccgggg tcgccagcga tccgcgtcgt cggtcgctgg ccaacgccct
      721 gcgtcaggcc cgccactacg accccgaagc cacctacgtc agcctgtggc tgcctgagct
      781 gcgcagtgtg ccgccgcagc tgcggcatac gcccttcctg ctgccgcacc tgcaactgga
      841 cgccatgggc tatccgcgcc tggagcacat tccggaagcc tggaagccct atctgcccag
      901 cgccgcctga gccgggcgct agcccagctc gacgcagttg cgcccggcgg ccttggcccg
      961 gtacagcgcc tggtcggcac gggcgaaggc ggcatcggca ctctcgccga ccatgaatgc
     1021 ggtcagcccg gccgacaggg tgatggtcac cggctcgccg cggaagtgga acgggcaggc
     1081 ctcaatcgcc gcgcgcaggg tctcgagcaa ctgctggccg ccatccagcg gggtgctggg
     1141 caccagcagg acgaactcct cgccgccgaa acgggcgagg aaatcggtct tgcgcaggcg
     1201 ccgcgccagc tcgccggcga tgatcttcag caccttatcg ccggccaggt ggccgtagcc
     1261 gtcgttgatc cgcttgaagt ggtcgacgtc cagcaccgcc agcagcagct cgccgccgta
     1321 gcgacgccag cgggccagct ccaggtccag gcgttcggcc cagccggcgc gattggccag
     1381 gccggtgagc gggtcgacca gcgccttctg ccgctgctcc tcgatgtgct cgcgaaaccc
     1441 ctgggcctcg cgctccatgt cggcgacctt ctgcgacagc gcctgcaggc gcttgccgac
     1501 ttcctcctcg cggccctcgc gctggcgctg atggtcgctg accgtgccga gcaggccgtc
     1561 caggcgctgc tccagggcac gcttcaggct gggcagatcg gccgcctcct gcacgctggc
     1621 ctgcaggtca ctgacctgtt cgcgcagttc ctggttgaag ttgcgcgagc tttccaccga
     1681 ctcgctgtag ccttcgtgcg cctcggcgag agtgccgagg aacgccgcca ggcgctcgtt
     1741 gagctgctgc agg
//
LOCUS       DATIHC010000322         1898 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12472, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000322 DATIHC010000000
VERSION     DATIHC010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1898)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1898)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1898
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12472"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..678)
                     /locus_tag="VLF16_05225"
     CDS             complement(<1..678)
                     /locus_tag="VLF16_05225"
                     /inference="COORDINATES: protein motif:HMM:TIGR02050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbdK family carboxylate-amine ligase"
                     /protein_id="HSX70318.1"
                     /translation="MPQNSLSFGIEEEFFLVDLATRDIPSQPPAELLEAYRQTFGTQL
                     AAEMFQSQIEVVSPILHDLGEADAWLRDSRGKLAAQAGEFGLGVLGAAAHPFADWREQ
                     RPTDSEHYRQLFADYRDIAQRSLVSGLHVHVGVPEGCDRVRVMNRVLGWLPLLLALSC
                     SSPFWGGRDTGLASHRRTLCGEWPRMGIPEHLPDDTALAAYVDLLLATGALRRRGDLW
                     WFIRPSAR"
     gene            792..>1898
                     /locus_tag="VLF16_05230"
     CDS             792..>1898
                     /locus_tag="VLF16_05230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012075880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing redox enzyme family protein"
                     /protein_id="HSX70319.1"
                     /translation="MTTTSSPLSAVDCHPVRDTYDALMQPAPSAAALARAGDFLDTQL
                     ALAERLPCDLPSDPQRLLEWVRAGAKRTTEAYSAYLQERRQGEPRRYFGSRAHALYFL
                     RAVAPTKLVDGAWLYGLLPHWQDLRFRPLVQTYLEELGNGVPAQNHVVLYRRLLAENG
                     CDDLTGLSDAHYVQGTQQLALGHLAERYLPELIGYNLGYEQLPLHLLISTYELGELGL
                     DPYYFQLHVTIDNAGSGHAQQAVQALQDNLPVVGDRQEFLRRVSLGYRLNDLGLGSTK
                     VIAEFDLERELLAMLERKRQVAGRVHSDHCRIDGRTVNQWLAVPGRMSGFLSALQAHG
                     WVRRNRDPRDSQFWNLIDGQRAAMFGVFNPYERQL"
BASE COUNT          299 a          652 c          639 g          308 t
ORIGIN      
        1 gcgcgcggaa ggacggatga accaccagag atcgccccgc cggcgtagcg cgccggtggc
       61 gagcagcagg tcgacatagg cggccagcgc ggtatcgtcc ggcaggtgct cgggaatgcc
      121 catccttggc cactccccgc agagggtgcg gcgatggctg gcgagcccgg tgtcacgccc
      181 gccccagaac ggcgacgagc agctcagggc cagcagcaac ggcagccagc ccagcacccg
      241 gttcatcacc ctgacgcggt cgcatccttc gggcacgccg acatgcacgt gcaggcccga
      301 taccaggctg cgctgggcga tgtcgcggta atcggcgaac agttggcgat agtgctccga
      361 gtcggtcggg cgctgctcgc gccagtcggc gaaggggtgc gcggcggcgc ccagcacgcc
      421 caggccgaac tcgccggcct gggctgccag cttgccgcgg ctgtcgcgca gccaggcgtc
      481 ggcttcgccc aggtcgtgca ggatcgggct gaccacctcg atctggctct ggaacatctc
      541 cgcggcgagc tgggtgccga aagtctgccg gtacgcttcc agcagctcgg cgggcggttg
      601 tgacggtatg tcccgggtgg ccaggtcgac cagaaagaac tcttcttcga taccgaaact
      661 caggctgttt tgtggcatgg cgtcctcctg aacaagggac gggtgccgcc tcgccggagt
      721 tcagcttgta agtggaatct ttcgggttcg ctggcactcc cagcagtacg acccctttcg
      781 agagtttttc catgacgacc acctccagtc cgttgagcgc ggtggattgc catccggtac
      841 gcgataccta cgacgcgctg atgcagcccg cgccgtcggc cgccgcgctg gcgcgtgcgg
      901 gtgattttct cgacacccag ctggccctgg ccgagcgcct gccatgcgac ctgccgagcg
      961 atccccagcg tctgctggag tgggtgaggg cgggtgccaa gcgcaccacc gaggcctatt
     1021 cggcctacct gcaggaacgc cgccagggcg agccgcggcg ctacttcggc agccgcgccc
     1081 atgcgctgta cttcctgcgc gcggtggcgc cgaccaagct ggtggacggt gcctggctct
     1141 acggcctgct gccgcactgg caggatctgc gcttccgccc gctggtacag acctacctgg
     1201 aagagctggg caacggcgtg ccggcgcaga accatgtagt gctgtatcgc cgccttctgg
     1261 ccgaaaacgg ctgcgacgac ctcaccggcc tgagcgatgc ccactacgtc cagggcaccc
     1321 agcagttggc cctgggccat ctggccgagc gctacctgcc ggaactgatc ggctacaacc
     1381 tgggctacga gcaattgccc ctgcacttgc tgatctccac ctacgagctc ggcgagctgg
     1441 gtctcgaccc ttattacttc cagctgcacg tgaccatcga caacgccggc agcggccatg
     1501 cccagcaggc cgtgcaggcg ctgcaggaca acctgccggt ggtgggcgat cgccaggagt
     1561 tcctgcgccg ggtcagcctg ggctaccgcc tcaacgatct gggccttggc agcaccaagg
     1621 tgatcgccga gttcgatctg gagcgcgagc tgctggccat gctggagcgc aagcgccagg
     1681 tcgcagggcg cgtgcactcg gatcactgcc ggatcgacgg gcgcacggtc aaccagtggc
     1741 tggcggtgcc ggggcgcatg tccggcttcc tctccgcgct gcaggcccat ggctgggtgc
     1801 gacgcaaccg cgacccgcgc gacagccagt tctggaacct gatcgacggc cagcgcgccg
     1861 ccatgttcgg cgtcttcaac ccctacgagc ggcagctg
//
LOCUS       DATIHC010000323         5120 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19523, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000323 DATIHC010000000
VERSION     DATIHC010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5120)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5120)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5120
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19523"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..224
                     /locus_tag="VLF16_05235"
     CDS             <1..224
                     /locus_tag="VLF16_05235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CreA family protein"
                     /protein_id="HSX70320.1"
                     /translation="CRQVGPIRFSGELKGGEEVFKERTSLVFKTMQVVRFFDQKRNTL
                     VYLVYSDRVIEGSPQNAVTAIPILPWSAQ"
     gene            complement(328..600)
                     /gene="rpsT"
                     /locus_tag="VLF16_05240"
     CDS             complement(328..600)
                     /gene="rpsT"
                     /locus_tag="VLF16_05240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011336008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HSX70321.1"
                     /translation="MANTPSAKKRAKQAEKRRSHNASLRSMVRTYIKNVVKAIDAKDL
                     EKAQTAYTLAVPVIDRMADKGIIHKNKAARHKSRLNGHIKALATAA"
     gene            783..2327
                     /gene="murJ"
                     /locus_tag="VLF16_05245"
     CDS             783..2327
                     /gene="murJ"
                     /locus_tag="VLF16_05245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012316362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0034204 - lipid translocation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HSX70322.1"
                     /translation="MNLLKSLAAVSSLTMVSRVLGFVRDTLIARIFGAGVASDAFVVA
                     FKLPNLLRRIFAEGAFSQAFVPILAEYKTQQGEEATRTFLAYIAGLLTLVLALVTLLG
                     ILAAPWIVWISAPGFADEPARFALTVDLLRVTFPYILLISLSSLVGAVLNTWNRFSVP
                     AFVPTLLNVSMIIFTVWLAPYFDPPIMALGWAVLVGGLAQFLWQLPALKRVGMLVLPR
                     LSLRDTGVWRVLKQMGPAIFGVSVGQISLIINTIFASFLVAGSVSWMYYADRLMELPS
                     GVLGVALGTILLPALAKTYASADREEYSRLLDWGLRLSFLLALPCTLALAIIAEPLIV
                     SLFQYGKFTAHDSAMTQQALVAYAVGLLALILVKILAPGFYAQQNIKTPVRIAIVSLL
                     ATQAMNALFVFVFDLKHAGLALAISLAACLNAGLLYWQLRSRQMYLPQPGWTPFVVKL
                     VLAVVAMSAVLLAMMYFMPAWEQGSMLLRLLRLGALVAAGAATYFGMLLLLGFRPRDF
                     SRRAVH"
     gene            2401..3339
                     /gene="ribF"
                     /locus_tag="VLF16_05250"
     CDS             2401..3339
                     /gene="ribF"
                     /locus_tag="VLF16_05250"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003919 - FMN adenylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HSX70323.1"
                     /translation="MQLVRGLHNLLPLTQGCVATIGNFDGVHRGHQAILARLRERAIE
                     LGVPSCVVIFEPQPREFFGPDSAPARLTRLREKLELLAAQGVDRVLCLAFNRRLRELS
                     ADEFVRQVLVDGLRVKHLEVGDDFRFGAGRTGDFAFLVEAGERHGFSVEAALTVELDG
                     ERISSTRVREALQAGELELAERLLGRPYALSGRVLHGQKLARQLGTPTANVQLKRRKA
                     PLQGVFLVSALHQGHRFHGVANIGQRPTVAGDGSPHLEVHLLEFAGDLYGQRLTVEFH
                     HKLRDEQRFASLEALKTAIDADVAAARAYWLGQPLD"
     gene            3354..>5120
                     /gene="ileS"
                     /locus_tag="VLF16_05255"
     CDS             3354..>5120
                     /gene="ileS"
                     /locus_tag="VLF16_05255"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012699827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HSX70324.1"
                     /translation="MTDYKATLNLPDTAFPMKAGLPQREPQTLARWDSIGLYQKLREI
                     GANRPKFVLHDGPPYANGNIHIGHAVNKILKDMIVRSKTLAGFDAPYVPGWDCHGLPI
                     EHKVETTFGKNQPSDLTRERCRTYAGEQIEGQKADFIRLGVLGEWDNPYKTMAFANEA
                     GEIRALAEMVKQGFVFKGLKPVNWCFDCGSALAEAEVEYQDKKSDAIDVAFQVEDADK
                     LAAAFGLSELSKPASIVIWTTTPWTIPANQALNVHPEFNYALVDTGERLLVLAEELVE
                     SCLQRYGLTGEIVARAEGRALDLIRFRHPLYERFSPVYLAEYVELGAGTGVVHSAPAY
                     GEDDFRTCKQYGMHNDDILSPVQSNGVYVTDLPFFGGQFIWKANPAIVAKLGEVGALL
                     EHESIQHSYMHCWRHKTPLIYRATAQWFVGMDKQANDGSTLRERALSAIEQTQFVPAW
                     GQARLHGMIAGRPDWCISRQRNWGVPIPFFLHKASGELHPRTVELMEEVAKRVEEQGI
                     EAWFKLDATELLGNEAADYDKISDTLDVWFDSGTTHWHVLRGSHPLGHDAGPRADLYL
                     EGSDQHRGWFHSSLLTACAIDGH"
BASE COUNT          820 a         1681 c         1637 g          982 t
ORIGIN      
        1 cctgtcgcca ggtgggtcca attcgtttca gtggtgagct caagggcggc gaagaggtgt
       61 tcaaggagcg cacgtcgctg gtgttcaaga ccatgcaggt ggtgcgcttc ttcgaccaga
      121 agcgcaatac actggtctac ctggtgtata gcgatcgggt gatcgagggt agtccgcaga
      181 acgcggtgac ggccattccg atcctgccct ggtcggcgca gtagatcgaa aaaaagccgg
      241 agcttgctcc ggctttttca tgccctttcg aaaatcgcgg gcaataaaaa accggccctg
      301 aggccggtct tttcaagaac agatcaatca ggcggcggta gccagagcct tgatgtgacc
      361 gttcaggcgg ctcttgtgac gagcggcctt gttcttgtgg atgatgccct tgtcggccat
      421 gcggtcgatg accggaacgg ccagggtgta ggcggtctga gccttttcca ggtctttggc
      481 gtcgatagcc ttgaccacgt tcttgatgta ggtacgaacc atggagcgca ggctggcgtt
      541 atggctacga cgcttctcag cctgtttggc gcgttttttg gcagaaggtg tattggccac
      601 cgtcaagctc ctcgaaaact aggggatagc aaacaaataa ggccgcgaat catgccgatg
      661 cgagacgcac ctgtcaagtg tgcaagtggc tcggcgtgct ggcctgacca gcggcggctg
      721 gttacactcg tcgcctccgt cgaccagcgc cccgcgccgg cctttcgcaa cgccgagact
      781 ccatgaatct gctcaaatcc ctggccgccg tcagctccct gaccatggtt tcccgcgtgt
      841 tgggtttcgt ccgcgacacc ctgatcgcgc gcatcttcgg cgccggggtg gcgtcggacg
      901 ccttcgtcgt cgcctttaag ctgcccaatc tgctgcgccg catcttcgcc gagggcgcct
      961 tttcccaggc tttcgtgccg attctggccg aatacaagac ccagcagggc gaagaggcga
     1021 cccgcacctt cctggcctat atcgccggcc tgctgaccct ggtgctggcg ctggtgaccc
     1081 tgctcggcat cctcgccgcc ccctggatcg tgtggatcag tgcgccgggc ttcgccgacg
     1141 aaccggcacg cttcgccctg accgtcgacc tgctgcgggt gacctttccc tatatcctgc
     1201 tgatctcgct gtcgtcgctg gtcggtgcgg tgctcaacac ctggaaccgc ttctcggtgc
     1261 cggccttcgt gccgactctg ctgaatgtca gcatgatcat cttcaccgtc tggctggcgc
     1321 cctatttcga tccgccgatc atggctctgg gctgggccgt gctggtcggt ggcctggcac
     1381 agtttctctg gcaactgccg gcgttgaagc gggtcggcat gctggtgctg ccgcgcctga
     1441 gccttcgcga cacaggcgtg tggcgggtgc tgaagcagat ggggccggcg atcttcggtg
     1501 tgtcggtggg gcagatctcg ctgatcatca acaccatctt cgcctccttc ctggtcgccg
     1561 gctcggtgtc ttggatgtac tacgccgacc gcctgatgga gctgccgtcc ggtgtgcttg
     1621 gcgtcgcgct gggcaccatc ctgctgccgg cgctggccaa gacctacgcc agcgccgatc
     1681 gcgaggagta ttcccgactg ctcgactggg ggctgcgtct ttcctttctg ctggcgctgc
     1741 cctgcaccct ggcgctggcg atcatcgccg agccgctgat cgtttcactg ttccagtacg
     1801 gcaagttcac ggctcatgac tcggcgatga cccagcaggc actggttgct tatgcggtcg
     1861 gattgctggc gctgatcctg gtgaagatcc tggcgcccgg tttctatgcc cagcagaaca
     1921 tcaagacgcc ggtgcgcatc gccattgtca gcctgctggc gacccaggcg atgaatgcgc
     1981 tgttcgtctt cgttttcgac ctgaagcatg ccggcctggc gctggccatc agcctggcgg
     2041 cctgtctcaa tgccggcttg ctctactggc agctgcgcag ccgacagatg tatctgccgc
     2101 agccgggctg gactcccttc gtggtcaagc tggtactcgc cgtggtggcc atgtcggcgg
     2161 tgctgctggc gatgatgtat ttcatgccag cctgggagca gggcagcatg ctgctgcgcc
     2221 tgttgcgtct cggcgcgctg gtagcggctg gcgcggcaac ctatttcggc atgctcctgc
     2281 tgctcggttt ccgtcctcgg gacttttcgc gtcgcgcggt gcattgagcc cggacgcgct
     2341 gcctgtcgtc gctgcctgcc tgtgcgtata atcggccact ttgtaagcaa gaagcgcgct
     2401 atgcagctgg ttcgaggcct ccacaatctg ctccccctga cccagggatg cgttgccacc
     2461 atcggcaatt tcgatggtgt gcaccgtggt caccaggcca tcctggcgcg cctgcgcgag
     2521 cgcgccatcg agctgggcgt gccgagctgc gtggtgatct tcgaaccgca gccgcgtgaa
     2581 ttcttcggcc cggacagcgc gccggcgcgc ctgacccgcc tgcgcgagaa gctcgagctg
     2641 ctcgccgccc agggcgtcga ccgggtgctg tgcctggcct tcaaccgtcg cctgcgtgag
     2701 ctgtccgccg acgagttcgt gcgccaggtg ctggttgacg ggctgcgggt gaagcacctg
     2761 gaggtcggtg acgatttccg cttcggtgcc ggccgcaccg gcgacttcgc cttcctggtc
     2821 gaggccggcg agcgccatgg cttcagcgtc gaggcggcgc tgaccgtcga gctggacggc
     2881 gagcgcatca gcagcactcg ggtgcgcgag gcgttgcagg ctggcgagct ggagctggcc
     2941 gagcgtctgc tggggcggcc ttatgccctg agcgggcgcg tgctgcacgg gcagaagctg
     3001 gcgcgccagc tcggcacgcc gaccgccaat gtccagctca agcggcgcaa ggcgccgctg
     3061 cagggcgtgt tcctggtcag tgcgctgcat caggggcatc gttttcacgg cgtggccaat
     3121 atcggccagc gtcccacggt ggccggcgac ggcagcccgc acctggaagt gcatctgctg
     3181 gagttcgctg gcgacctcta cggccagcgc ctgaccgtgg agttccacca caagctgcgc
     3241 gacgagcagc gtttcgcctc cctggaggcg ctgaagacgg cgatcgacgc ggatgtcgcc
     3301 gccgcccggg cctactggct tggccaaccg cttgactgat cgaagagcct gagatgaccg
     3361 actacaaagc cacgctgaac ctcccggata ctgccttccc gatgaaagcc ggcctgccgc
     3421 agcgcgagcc gcagaccctg gcgcgctggg acagcatcgg cctgtaccag aagctgcggg
     3481 aaatcggcgc gaaccggccg aagttcgtcc tgcatgacgg cccgccctac gccaacggca
     3541 acatccacat cggtcacgcg gtcaacaaga tcctcaagga catgatcgtc cgctccaaga
     3601 ccctggccgg tttcgacgcc ccttacgtgc cgggctggga ctgccacggc ctgccgatcg
     3661 agcacaaggt ggaaaccacc ttcggcaaga accagccgtc cgacctgacc cgcgagcgct
     3721 gccgcaccta tgccggcgag cagatcgaag ggcagaaggc cgatttcatc cgcctcggcg
     3781 tgctgggcga atgggacaac ccctacaaga ccatggcctt cgccaacgag gccggcgaga
     3841 tccgcgcgtt ggccgagatg gtcaagcagg gcttcgtgtt caagggcctg aagccggtca
     3901 actggtgctt cgactgcggc tcggcgctgg ccgaggccga ggtggagtat caggacaaga
     3961 agtccgacgc catcgacgtg gccttccagg tcgaggatgc cgacaagctg gccgccgcct
     4021 tcggtctgag cgagctgagc aagccggcct ccatcgtcat ctggaccacc accccctgga
     4081 ccattccggc caaccaggcg ctgaacgtcc atcccgaatt caattacgcc ctggtcgata
     4141 ccggcgagcg tctgctggtg ctggccgaag aactggtcga gagctgcctg cagcgctacg
     4201 gcctgaccgg cgagatcgtc gctcgcgcag aaggccgcgc gctggatctg atccgcttcc
     4261 gtcacccgtt gtacgagcgc ttctcgccgg tgtacctggc cgaatatgtc gagctcggcg
     4321 ccggtaccgg cgtggtgcac tccgcacccg cctacggcga ggacgacttc cgtacctgca
     4381 agcagtacgg catgcacaac gacgacatcc tcagcccggt gcagagcaac ggcgtgtatg
     4441 tcaccgacct gccgttcttc ggcggccagt tcatctggaa ggccaatccg gccatcgtcg
     4501 ccaagctggg cgaagtcggc gcgctgctcg agcacgagag catccagcac agctacatgc
     4561 actgctggcg ccacaagacc ccgctgatct atcgcgccac cgcgcagtgg ttcgtcggca
     4621 tggacaagca ggccaacgac ggcagcaccc tgcgcgagcg cgccctgagc gccatcgagc
     4681 agacccagtt cgtaccggcc tggggccagg cacggctgca cggcatgatc gccggtcgtc
     4741 cggactggtg catctcgcgt cagcgcaact ggggcgtgcc gatcccgttc ttcctgcaca
     4801 aggccagcgg cgagctgcat ccgcgcaccg tcgagctgat ggaagaagtg gccaagcgcg
     4861 tcgaggagca gggtatcgag gcctggttca agctcgacgc caccgagctg ctcggcaacg
     4921 aggcggccga ctacgacaag atcagcgaca ccctagacgt ctggttcgac tccggtacca
     4981 cccactggca cgtcctgcgc ggctcgcatc cgctgggaca cgatgccggc ccgcgcgccg
     5041 acctgtactt ggaaggctcc gaccagcacc gtggctggtt ccattcctcc ttgctgaccg
     5101 cctgcgccat tgatggccac
//
LOCUS       DATIHC010000324         1699 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28915, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000324 DATIHC010000000
VERSION     DATIHC010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1699
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28915"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..530
                     /locus_tag="VLF16_05260"
     CDS             <1..530
                     /locus_tag="VLF16_05260"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253535.1"
                     /note="an AccC homodimer forms the biotin carboxylase
                     subunit of the acetyl CoA carboxylase, an enzyme that
                     catalyzes the formation of malonyl-CoA, which in turn
                     controls the rate of fatty acid metabolism; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HSX70325.1"
                     /translation="FEFLYEDGRFYFIEMNTRVQVEHPVTEMVTGIDIVKEMLSIAAG
                     NKLSIKQEDVKILGHALECRINAEDPDNFMPCPGKVKHFHAPGGNGIRVDSHLYSGYS
                     VPPNYDSLIGKLISYGRTRDEAMARMRNALDEIVVDGIKTNIPLHRDLTRDKGFLKGG
                     INIHYLEKKLGMDKH"
     gene            839..>1699
                     /gene="prmA"
                     /locus_tag="VLF16_05265"
     CDS             839..>1699
                     /gene="prmA"
                     /locus_tag="VLF16_05265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HSX70326.1"
                     /translation="MPWLQVRLAITPEQAETYEDALLGVGAVSVTFMDAEDQPIFEPD
                     LGTTPLWSNTHLLALFEADTDPANLVAHLQLLTGGELPAHEIEHIADQDWERSWMDNF
                     QPMRFGRRLWIVPSWHAAPEPEAVNLLLDPGLAFGTGTHPTTALCLEWLDGQELANCT
                     VIDFGCGSGILAIAALLLGAPQALGTDIDPQALEASRDNASRNGIDPARFPVYLPADL
                     PQQPAEVVVANILAGPLVSLAPQITALVKAGGRLALSGILAEQADEVRAAYADAFDLD
                     LTAIKDGWVRI"
BASE COUNT          318 a          615 c          509 g          257 t
ORIGIN      
        1 ccttcgagtt cctctatgaa gatggccgct tctacttcat cgagatgaac acccgcgtgc
       61 aggtcgagca cccggtcacc gagatggtca ccggcatcga catcgtcaag gaaatgctca
      121 gcatcgccgc cggcaacaag ctgtcgatca agcaggaaga cgtgaagatc ctcggtcacg
      181 ccctggagtg ccggatcaac gccgaagacc cggacaactt catgccctgc cccggcaagg
      241 tgaagcactt ccacgcgccg ggcggcaacg gcatccgtgt cgactcgcac ctgtacagcg
      301 gctactcggt gccgccgaac tacgattcgc tgatcggcaa gctgatcagc tacggtcgta
      361 cccgcgacga agccatggct cgcatgcgca atgccctgga cgagatcgtg gtcgacggca
      421 tcaagaccaa catcccgctg caccgcgacc tgacccgcga caagggcttc ctcaagggtg
      481 gaatcaacat ccactatctg gagaagaagc tgggcatgga caagcactga gcctcacagc
      541 ccgccgatcg tcggcggacc gtgaatcaga tgctcaccag ggccgccttc gcgcggccct
      601 ggtcgtttaa cgcctccgag cccacctgaa atctcgcgag cagagcaaaa cggtggcgca
      661 ttgaccggaa gcgccagcgc gtcaaaagct gaggacgcgc agctcaagaa cgagcaaatg
      721 ggcagccaag ccgccgcttc ccgagtcgtt tccagggccg cttgccgacg cgcagcagat
      781 tttaagcggg ctctcgagta agctgcgcgc ccacgcccta ccgcacacga ggtccgccat
      841 gccctggcta caagtccgtc tcgccatcac ccccgaacag gccgagacct acgaagacgc
      901 cctgctcggc gtcggcgccg tgtcggtgac cttcatggac gccgaggacc agccgatctt
      961 cgagccggac ctgggcacca ccccgctgtg gtccaacacc catctgctcg ccctgttcga
     1021 ggccgatacc gacccggcca acctggtcgc gcacctgcag ctgctcaccg gcggcgaact
     1081 gccggcccac gagatcgagc acatcgccga tcaggactgg gaacgcagct ggatggacaa
     1141 cttccagccc atgcgtttcg gccgccgcct gtggatcgtg ccgagctggc acgccgcgcc
     1201 ggagccggag gcggtcaacc tgctgctcga tccgggcctg gccttcggca ccggcaccca
     1261 cccgaccacc gcgctttgcc tggaatggct ggacggccag gagctggcca attgcaccgt
     1321 gatcgacttc ggctgcggct ccggcatcct ggccatcgcc gccctgctgc tcggcgcacc
     1381 acaggccctc ggcaccgaca ttgacccgca ggccctggag gcctcgcgcg acaacgcctc
     1441 gcgcaacggc atcgacccgg cgcgcttccc ggtctacctg ccggccgatc tgccgcagca
     1501 gccggccgag gtggtggtgg ccaatatcct ggccggcccg ctggtatcgc tggcgccgca
     1561 gatcaccgcc ctggtaaagg ccggcggccg cctggcgctg tccggcatcc tcgccgagca
     1621 ggccgacgaa gtgcgggcgg cctatgccga cgccttcgac ctcgatctca ccgcgatcaa
     1681 ggacggctgg gttcgcatc
//
LOCUS       DATIHC010000325         1853 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28922, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000325 DATIHC010000000
VERSION     DATIHC010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1853
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28922"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1370)
                     /locus_tag="VLF16_05270"
     CDS             complement(<1..1370)
                     /locus_tag="VLF16_05270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PrkA family serine protein kinase"
                     /protein_id="HSX70327.1"
                     /translation="MSIFSHFQQRFEATRQEEYSLQEYLELCKSDPSAYATAAERMLM
                     AIGSPELVDTSTDPRLSRIFSNKVIRRYPAFADFHGMEECIDQIVSYFRHAAQGLEEK
                     KQILYLLGPVGGGKSSLAEKLKQLMEHIPFYAIKGSPVFESPLGLFNADEDGKILEEE
                     YGIPQRYLRSIMSPWAAKRLNEFGGDISKFRVVKLHPSILNQIAIAKTEPGDENNQDI
                     SALVGKVDIRKLEEFPQNDADAYSYSGALCRANQGLMEFVEMFKAPIKVLHPLLTATQ
                     EGNYNSTEGLGGLPYSGIILAHSNESEWHSFRNNKNNEAFIDRIYIVKVPYCLRVTDE
                     IKIYDKLLTHSSLANAHCAPDTLKMLAQFSTLSRLKEPENSNIYSKMRVYDGENLKDT
                     DPKAKSIQEYRDSAGVDEGMNGLSTRFAFKILSKVFNFDSNEIAANPVHLMYVLEQQI
                     EQEQFQP"
     gene            complement(1636..>1853)
                     /gene="glpE"
                     /locus_tag="VLF16_05275"
     CDS             complement(1636..>1853)
                     /gene="glpE"
                     /locus_tag="VLF16_05275"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004373510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004792 - thiosulfate sulfurtransferase
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase GlpE"
                     /protein_id="HSX70328.1"
                     /translation="SRHLDNHSLPDFIAQADFDQPLIVACYHGNSSQSAAAYLAHQGF
                     SEVYSLNGGFELWHSQYPDQVARGEAE"
BASE COUNT          305 a          514 c          640 g          394 t
ORIGIN      
        1 ggctggaact gctcctgctc gatctgctgc tcgagcacgt acatcaggtg caccgggttg
       61 gccgcgattt cgttggagtc gaaattgaag accttggaca ggatcttgaa ggcgaagcgg
      121 gtcgacaggc cgttcatgcc ctcgtccacg ccggcactgt cgcggtactc ctggatcgac
      181 ttggccttgg ggtcggtgtc cttgaggttc tcgccgtcgt agacgcgcat cttcgagtag
      241 atgttggagt tctccggctc cttcaggcgc gacagggtgg agaactgggc gagcatcttc
      301 agggtgtccg gcgcgcagtg ggcgttggcc agcgagctgt gggtgagcag cttgtcgtag
      361 atcttgatct cgtcggtgac gcgtaggcag tagggcacct tgacgatgta gatgcggtcg
      421 atgaacgcct cgttgttctt gttgttgcgg aagctgtgcc actcggactc gttggagtgg
      481 gcgaggatga tgccgctgta gggcagcccg ccgagaccct cggtgctgtt gtaattgccc
      541 tcctgggtgg ccgtcagcag cgggtgcagc accttgatcg gcgccttgaa catctcgacg
      601 aactccatca ggccctggtt ggcccggcac agcgcgcccg aatagctgta agcgtcggcg
      661 tcgttctgcg ggaattcctc gagcttgcgg atatccacct tgccgaccag ggccgagatg
      721 tcctggttgt tttcgtcgcc cggctcggtc ttggcgatgg cgatctggtt gagaatcgag
      781 gggtgcagct tgaccacgcg gaacttgctg atgtcgccgc cgaattcgtt gaggcgcttg
      841 gcggcccagg gcgacatgat cgaacgcaga tagcgctgcg gaatgccgta ctcctcttcg
      901 aggatcttgc catcctcgtc ggcattgaac aggccgagcg gcgactcgaa caccggcgag
      961 cctttgatgg cgtagaaggg gatgtgctcc atcaactgct tgagcttctc ggccagcgag
     1021 gacttgccgc cgcctaccgg gccaagcagg tagaggatct gcttcttctc ctccaggccc
     1081 tgggctgcgt ggcggaagta ggagacgatc tggtcgatgc actcttccat gccgtggaag
     1141 tcggcgaaag cggggtagcg acggatcacc ttgttggaga agatccgcga cagccgcggg
     1201 tcggtcgagg tgtccaccag ctcgggcgac ccgatggcca tcagcatgcg ctcggcggcc
     1261 gtggcgtagg cgctcgggtc cgatttgcac agttccaaat attcctgcag ggaatattct
     1321 tcctgccgag tcgcctcgaa ccgttgctgg aagtggctga atatactcat gactgcacct
     1381 cgctcgcttg caatgagccg gcgtgggtca ttcgggcggg tgcgcgcaag ggtggccgta
     1441 aaccgctgga aatcccccag acaccgcaag atcgctaccg atggcccgga accggtgtgc
     1501 cggctctccc ttctggatgg cctcagtgga agagtagttc ggtttcggtg gaggcaagcg
     1561 tggcgaacgg gtgacaaggg gttgccattc gtcgtcaggc cgggcgtgac gggggctgtc
     1621 gccccgcgaa tttttttact cggcctcgcc gcgggcgacc tgatcgggat actggctgtg
     1681 ccacagctcg aaaccaccgt tgaggctgta gacctcggaa aagccctggt gtgccaggta
     1741 ggcggcggcg ctctggctgg agttgccgtg gtagcaggcg acgatcagcg gctggtcgaa
     1801 gtcggcctgg gcgatgaagt caggcaggct gtggttgtcc aggtggcggg agc
//
LOCUS       DATIHC010000326         2031 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5718, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000326 DATIHC010000000
VERSION     DATIHC010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2031)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2031)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2031
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5718"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..669)
                     /gene="pxpB"
                     /locus_tag="VLF16_05280"
     CDS             complement(<1..669)
                     /gene="pxpB"
                     /locus_tag="VLF16_05280"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017938634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing)
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HSX70329.1"
                     /translation="MIRLEPAGAEALLLVLAEQPTPDLPLRIAALADDIRTELGDLLT
                     DLVPGWTSLLLHYDLLRTDHLQLAERLAPLLERWRAAPVPSVAGHLHEIPVWYAGEDL
                     AEVARACELTVEQVIELHSAAEYRVGAIGFAPGFAYLGELHERLALPRRATPRTVVPA
                     GSLAIAERQTAIYPQASPGGWHLLGLCPWRLFEPARKPPCPLVLGDRVRFRPVDEATY
                     RRELV"
     gene            complement(666..1409)
                     /locus_tag="VLF16_05285"
     CDS             complement(666..1409)
                     /locus_tag="VLF16_05285"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003242802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_function: GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing)
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HSX70330.1"
                     /translation="MSRILLNCDMGEGYGAWRMGDDEHAMPLVDQANLACGFHAGDPL
                     IMRRSVAQAVQHGVQIGAHPSYPDLQGFGRRHLNCSPEEVTALVLYQLGALDAFCRTA
                     GVEVAYVKPHGALYNDLVRDDALLDAVLAACASYRKGLPLMVLALADNARERRLAEAA
                     GVPLLFEAFADRAYLAAGQLAPRRLAGAVHHQPERILQQALAIATGEPFADIDGKPLQ
                     VQADSLCVHGDNAESLAVLRRLRAQLDAL"
     gene            complement(1519..>2031)
                     /locus_tag="VLF16_05290"
     CDS             complement(1519..>2031)
                     /locus_tag="VLF16_05290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III PLP-dependent enzyme"
                     /protein_id="HSX70331.1"
                     /translation="TLQMINMGGGFPANYIQRTNDLETYAEEITRFLKEDFGDELPEI
                     ILEPGRSLIANAGILVSEVVLIARKSRTAVERWIYTDVGKFSGLIETMDESIKFPIWT
                     ERKGEMEEVIIAGPTCDSADIMYENYKYGLPLNLAAEDRLYWLSTGAYTTSYSAVEFN
                     GFPPLKAFYL"
BASE COUNT          314 a          669 c          732 g          316 t
ORIGIN      
        1 gaccagttcc cggcggtagg tcgcctcatc gacgggccgg aagcgcaccc gatcaccgag
       61 cactagcgga cagggcggct tgcgcgccgg ctcgaacaag cgccaggggc agaggccgag
      121 caggtgccag ccgccgggcg aggcctgcgg gtagatggcc gtctgccgct cggcgatggc
      181 caggctacca gccggaacca cggtgcgcgg cgtggcccgg cgcggcagcg ccagacgttc
      241 atgcagctcg ccgaggtagg cgaaaccggg agcaaaaccg atggcgccga cccggtattc
      301 ggcggcgctg tgcagttcga tcacctgctc gacggtcagc tcgcaggcgc gcgccacctc
      361 ggccaggtcc tcaccggcgt accacaccgg aatctcgtgc aggtggccgg caacgctcgg
      421 caccggcgcc gcacgccagc gctccagcag cggtgcgagg cgttcggcca gctgcagatg
      481 gtcggtgcgc aacaggtcgt agtgcagcag caggctggtc cagccgggca ccaggtcggt
      541 cagcaggtcg cccagctcgg tgcggatgtc gtcggccagc gcggcgatgc gcagcggcag
      601 gtcgggcgtc ggttgctcgg ccagcaccag caacagggct tcggcaccgg ccggctcgag
      661 gcggatcaca gcgcgtccag ttgcgctcgc aggcgacgca gcacggccag cgactcggcg
      721 ttgtcgccgt gcacgcagag gctgtcggcc tgtacttgca gcggcttgcc atcgatatcg
      781 gcgaagggct cgccggtggc gatggccaga gcctgctgga gaatgcgttc gggctgatgg
      841 tgcaccgcac cggccaggcg ccgcggcgcc agctggccgg cggccaggta ggcgcggtcg
      901 gcgaaggcct cgaacagcag cggcacgccg gccgcctcgg ccaggcgccg ctcgcgcgca
      961 ttgtcggcca gggccagcac catcagcggc aggccttttc ggtacgaggc gcaggccgcc
     1021 agcaccgcgt cgagcagcgc gtcgtcgcgc accaggtcgt tgtacagcgc gccgtgcggt
     1081 ttgacgtagg ccacctcgac accggccgtg cggcagaagg cgtccagcgc gcccagctgg
     1141 tacagcacca gggcggtgac ttcctccggc gagcagttca ggtggcggcg gccgaagccc
     1201 tgcaggtcgg ggtatgaggg atgcgcgccg atctgcacgc cgtgctgcac ggcctgggcc
     1261 acgctgcgcc gcatgatcag cgggtcgccg gcatggaagc cgcaggccag gttggcctgg
     1321 tccaccagcg gcatggcgtg ctcgtcgtcg cccatgcgcc aggcgccgta gccctcgccc
     1381 atgtcgcagt tcagcagtat tcgggacatc tgcgctcctc ctggaagtcg cgcgttatcg
     1441 cgcagatcgc cgggtcgtgc aaccgagcct agcaacgaaa aggcccgcac ggggcgggcc
     1501 tttgggtcag cgcacggctt acaggtagaa ggccttcagc ggcgggaagc cgttgaattc
     1561 caccgcgctg tagctggttg tgtaggcacc ggtggacagc cagtacaggc ggtcttcggc
     1621 agccaggttc agcggcaggc cgtacttgta gttctcgtac atgatgtcgg cgctgtcgca
     1681 ggtcgggccg gcgatgatga cttcttccat ctcgcccttg cgctcggtcc agatcgggaa
     1741 cttgatggac tcgtccatgg tttcgatcag gccgctgaac ttgcccacgt cggtgtagat
     1801 ccagcgctcc acggcggtac gcgacttgcg cgcgatcagc accacttcgc tgaccaggat
     1861 gccggcgttg gcgatcagcg aacggcccgg ctcgaggatg atttccggca gctcgtcacc
     1921 gaagtcttcc ttgaggaagc gggtgatttc ctcggcgtag gtctccaggt cgttggtgcg
     1981 ctggatgtag ttggccggga agccgccgcc catgttgatc atctgcaggg t
//
LOCUS       DATIHC010000327         1524 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10234, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000327 DATIHC010000000
VERSION     DATIHC010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1524
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10234"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..462
                     /locus_tag="VLF16_05295"
     CDS             <1..462
                     /locus_tag="VLF16_05295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004423864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OprD family outer membrane porin"
                     /protein_id="HSX70332.1"
                     /translation="ARAGEIDNRAWNGLVAYAHSGHKVGLGYQQMEGDTGFAYVDGSD
                     PFLVNFVQINDFANAEERSWQARYDFDFATLGVPGLSFMTRYIKGDNAEVAGSTEEGR
                     EWERDIEFKYVVQSGPLEDLYVRLRNASFRSSFARDADENRVIVGYALPIW"
     gene            493..1467
                     /locus_tag="VLF16_05300"
     CDS             493..1467
                     /locus_tag="VLF16_05300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003303253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HSX70333.1"
                     /translation="MKTALSRIALACATLALSSQLLAEPKRPECIAPAKPGGGFDLTC
                     KLAQSGLKDSGLLEAPMRVTYMPGGVGAVAYNAVVAQRPKEAGTITAFSSGSLLNLAQ
                     GKFGRYDENAVRWLAGIGTDYGAISVRADSPYKTLDDLVQALKKEPGKIVFGAGATIG
                     GQDWMQTALIARAAGIQPQKLRYVAFEGGGETLTAMLGGHVQVTSSGLGEVTPQLAAG
                     KIRVLAVLSDERLPGKLANLPTAKEQGYDISWPVIRGFYMGPEVSDEDFAWWKAQFDT
                     LLASPEFAKLREQRDLFPLSMTGDELKAFVLKQVQEYKALAGEFGLMQ"
BASE COUNT          274 a          531 c          497 g          222 t
ORIGIN      
        1 gcccgggccg gcgagatcga caaccgcgcc tggaacggcc tggttgccta cgcccacagc
       61 ggccacaagg tcggcctcgg ctaccagcag atggaaggcg ataccggttt cgcctacgtc
      121 gatggcagcg accccttcct ggtcaacttc gtgcagatca acgacttcgc caacgccgag
      181 gagcgctcct ggcaggcccg ctacgacttc gacttcgcca ccctcggcgt gcccggcctg
      241 agcttcatga cccgctacat caagggcgac aacgccgaag tggccggcag cacggaagaa
      301 ggccgcgagt gggaacgcga catcgagttc aagtacgtgg tgcagagcgg cccgctcgag
      361 gacctctacg tgcgcctgcg caacgccagc ttccgctcca gcttcgcccg cgacgcggac
      421 gagaaccgcg tgatcgtcgg ctacgccctg cccatctggt aagccacaat aaaactccac
      481 aggagagaga tgatgaagac agccctgtcc cgtatcgccc tggcgtgcgc caccctggcc
      541 ctttccagcc agctgctggc cgagcccaag cgccccgagt gcatcgcccc ggccaagccc
      601 ggcggcggtt tcgacctgac ctgcaaactg gcccagagcg gcctgaaaga cagcggcctg
      661 ctcgaggcac cgatgcgcgt cacctacatg cccggtggcg tcggcgcggt ggcctataac
      721 gccgtggtcg cccagcgccc gaaggaagcc ggcaccatca ccgccttctc ctccggctcg
      781 ctgctcaacc tggcccaggg caagttcggc cgctacgacg agaacgccgt gcgctggctg
      841 gccggcatcg gtaccgatta cggcgccatc agcgtgcgcg ccgactcgcc ctataagacc
      901 ctcgacgacc tggtgcaggc gctgaagaag gagccgggca agatcgtctt cggcgccggc
      961 gccaccatcg gcggccagga ctggatgcag accgcgctga tcgcccgcgc tgccggcatc
     1021 cagccgcaga agctgcgcta cgtcgccttc gaaggcggtg gcgaaaccct cacggcgatg
     1081 ctcggcggcc acgtgcaggt cacctcgagc ggcctgggcg aggtcacccc gcagctggcg
     1141 gccggcaaga tccgcgtgct ggcggtgctc tccgacgagc gcctgccggg caagctggcc
     1201 aacctgccga cggccaagga gcagggttac gacatcagtt ggccggtgat ccgcggcttc
     1261 tacatgggcc cggaggtcag cgacgaggac ttcgcctggt ggaaggccca gttcgacacc
     1321 ctgctggcca gccccgagtt cgccaagctg cgcgagcagc gcgacctgtt ccccctgagc
     1381 atgaccggcg acgaactgaa ggccttcgtg ctcaagcagg tgcaggagta caaggcgctg
     1441 gccggcgaat tcggcctgat gcaataggga agttgcaggg ctaggcaagg cggtgttggc
     1501 aggcggctcg gctcggtagt tgat
//
LOCUS       DATIHC010000328         1503 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7880, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000328 DATIHC010000000
VERSION     DATIHC010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1503
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7880"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            169..1397
                     /locus_tag="VLF16_05305"
                     /pseudo
     CDS             169..1397
                     /locus_tag="VLF16_05305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612169.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
BASE COUNT          248 a          495 c          545 g          215 t
ORIGIN      
        1 gggcccgctg ggccggggca cggtttcttg agacagcgtc gagcgctact tttcccagtg
       61 aagtgggggt agagcatgga cgacaagaac gagatgaaac ctggtgcaac ggaggcttcg
      121 gccccggcga cgcgcgcccc acacgctggc ggcggcgggg ccgaggccgg atcggggaag
      181 cggttctcgg cgaagcggaa gcttgcggcg gtgcagcggc tgatgcgggg cgagagcctg
      241 gaggcgctgt cgcgcgagat gaacgttccg gcgcatcggc tctcagggtg gcgtgaccgg
      301 gtgctgctgg cgggcgagag tgcgctgaag gagcgcgagc gcgacgcgcg tgacgacgag
      361 atcgcgcggc ttcaggcgaa ggtgggcgag atcaccatgg ccaacgagct tctttacgcg
      421 aagatcgaca agctggaggc gggccgccct ttggcccgag ggaggtcgag gaaatgagcc
      481 ggatgacctc gccctccctg cagcgccgct acccgctggc caccatctgc cggttctggg
      541 gtctgtcccg ggcaaccctt catcgccaac gcgcccgggc ggcggcaaac gcaccgcgtc
      601 cccctcggcg tcgcggaccg cagggcgctg ccaacgacac cgacctgctg gcggcgatcc
      661 gggaggtcat cgaggcctcg cccttcaccg gggagggcta tcgcaaggtc tgggcgcggc
      721 tacgcttccg tggcctgcgc acggcagcac cccgggtgcg gccactgatg aaggagcatg
      781 gcctgcttgc ccctcaccgg ccggcaccac gggcggcgca tccccatgac gggacggtcg
      841 tgacggagcg ggtggatcag gtgtggggca cggacatgac cgagaccttc acgacagccg
      901 agggtcgtgc ctacgtcttt gtcgcggttg accactgctc gggcgagttc gtgggcatcc
      961 acgccgcctc cggcgccagc cggtgggagg cgctggatcc gatccggcaa ggggtggcca
     1021 ggcacttcgg cgcgctcgag gagcccggcg tagccgaggg tctcgtcctg cgccacgacc
     1081 acggctcgaa ctacatgtcg ggcgatttcc agcgcgagat ccggttcctc ggcatgacca
     1141 gctcgcccgc ctttgtccgc cagcccgagg gcaacggcgt ggccgaacgg gcgatccgga
     1201 cgctgaagga gcagctcctc tgggttcggc acttcgccac gatcgaggaa ctcaggttgg
     1261 cgctggccgc gtttgcggct ctccacaacg ccagctggct gcgcgaacgg cacgggcaca
     1321 agacgcccga ccagatccgt gcggagcaga gggcccttga aaccgaagcc gccacggggt
     1381 tcaaactggc ggcatgaccg gcgcaaagca ctgtctcaaa accgtgcccc ggtacagccg
     1441 agcgctacgc ccgcagtccc ggacaaaagc tgcgccggtt caagaccttc tcctatgcgg
     1501 ccg
//
LOCUS       DATIHC010000329         1983 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36044, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000329 DATIHC010000000
VERSION     DATIHC010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1983)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1983)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1983
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36044"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(149..886)
                     /locus_tag="VLF16_05310"
     CDS             complement(149..886)
                     /locus_tag="VLF16_05310"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSX70334.1"
                     /translation="MSQIAEKVIVITGASGGIGEATARLLASQGARVVLGARRSERLE
                     ALTADIRNQGGTAEYRVTDVVREDDVQALVDLALERFGRVDVLVNNAGVMPLSPMAAL
                     KVGEWNRMIDVNLRGVLHGIAAVLPSMQLRRAGQIINVASIAAYKPIATGAVYCATKA
                     AVVSLSEALRQEVGADIRVTVVSPGVTESDLAETISDGATLEMIREFRRDAIPASAIA
                     EAIAYAIGQPAAVDVSELVIRPTSSAY"
     gene            1143..>1983
                     /locus_tag="VLF16_05315"
     CDS             1143..>1983
                     /locus_tag="VLF16_05315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003205146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSX70335.1"
                     /translation="MPNVENAEQNLEGQRCELAGLIARYCAEGGIVETTIPGLALYRA
                     TAPSPIVHTLYRPALCIMAQGQKVVRLEGEVYCYDPLHYLVASVTLPVTGEVTLAAEE
                     QPYLSLRLDIDPAELASLIASAGPIGVPNQGSGRGLHVDRLDAPLLDAVLRLVRLLDH
                     PRDIAMLAPLVQREILYRLLHSPQGQLLRDIATADSQAHRVNRAIEWLNQHYDEPLRI
                     DELAKVANLSTSTLHHRFKALTAMSPLQYQKQLRLQEARRLMLCENLDVSSAGYRVGY
                     ESPS"
BASE COUNT          321 a          699 c          664 g          299 t
ORIGIN      
        1 cgcacaggcg caggcccagc tcttcgccgg cgccctcgcg ggcctggaag cgggccaggc
       61 tgttgattgc ttgattcatg gcaatgtctc ctgcaagagc cgcccccggc gggatgcggc
      121 tccggtagac cgtctcggac aggcgccctc aataggcgct ggaggtggga cggatcacca
      181 gttcgctgac gtccaccgcg gccggctggc cgatggcgta ggcgatcgcc tcggcgatgg
      241 cgctggccgg aatcgcgtcg cggcggaact cgcggatcat ctccagggtg gcgccatcgg
      301 agatggtctc ggccaggtcc gactcggtga cgccaggcga gaccacggtg acgcggatat
      361 cggcgcccac ctcctgacgc agcgcctcgg acagcgacac caccgccgcc ttggtcgcgc
      421 agtacacggc gccggtggcg atcggtttgt aggcggcgat ggacgctacg ttgatgatct
      481 gcccggcgcg gcgcagctgc atgctcggca gcacggcggc aatgccgtgc agcacgccgc
      541 ggaggttgac gtcgatcatg cggttccact cgccgacctt cagcgccgcc atgggcgaca
      601 gcggcatcac cccggcgtta ttgaccagca catcgacccg gccgaagcgc tccagcgcca
      661 ggtcgaccag ggcctgcacg tcgtcctcgc ggactacgtc ggtgacgcgg tactcggccg
      721 tgccgccctg gttgcggatg tccgcggtca gcgcttccag gcgttcgctg cgacgggcac
      781 cgagtacgac gcgggcgccc tggctggcca gcaggcgggc ggtggcttcg ccgatgccac
      841 cgctggcgcc ggtgatgacg atgactttct ctgcaatctg cgacatgagc tgttcctcgg
      901 taagcggcgc gaagtggcgc cgggacgagg cagagattgc gcctggggct gcggacatcg
      961 ttagacggaa actgccgaga acttgcctga ttctgcaaag cacacccgat cagacgctac
     1021 gcttggcaaa ctacgacagg tcggcttgcc caaacctgcc gtgctcttgc ctgatactgc
     1081 cgatagcagc cgagccgcca cacgctgcgc gtatgcttgc ggcaaccgag gagatgcgcg
     1141 ccatgcccaa cgtcgagaat gccgaacaga acctggaagg ccagcgctgc gagctggccg
     1201 ggctgattgc ccgatactgt gccgagggcg gcatcgtcga gacgacgatc cccggcctgg
     1261 cgctgtaccg cgccaccgcg ccctcgccca tcgtccacac cctgtaccgc ccggccctgt
     1321 gcatcatggc ccaggggcag aaggtggtgc gcctggaggg cgaggtgtac tgctacgacc
     1381 cgctgcatta cctggtggcc tcggtgaccc taccggtcac cggcgaagtc acgctggccg
     1441 cggaggaaca gccgtacctg agcctgcgcc tggatatcga cccggccgag ctggccagcc
     1501 tgatcgccag cgccgggccc atcggcgtgc ccaaccaggg cagcggccgc ggcctgcatg
     1561 tcgaccgact cgacgccccg ctgctggacg ccgtgctgcg cctggtgcgc ctgctcgacc
     1621 acccgcgcga catcgccatg ctcgcgccgc tggtgcagcg cgagatcctc taccgcctgc
     1681 tgcacagccc ccagggccag ctgctgcgcg acatcgccac ggcggacagc caggcgcacc
     1741 gggtcaaccg cgccatcgag tggctcaacc agcactacga cgagccgctg cgcatcgatg
     1801 aactggccaa ggtggccaac ctcagcacct ccaccctgca ccaccgcttc aaggcgctga
     1861 ccgccatgag cccgctgcag taccagaagc agctgcgcct gcaggaggcg cggcggttga
     1921 tgctgtgcga gaacctggat gtgtcgagcg ccggctaccg ggtcggctac gagagcccct
     1981 cgc
//
LOCUS       DATIHC010000330         2117 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36064, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000330 DATIHC010000000
VERSION     DATIHC010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2117
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36064"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..418
                     /locus_tag="VLF16_05320"
     CDS             <1..418
                     /locus_tag="VLF16_05320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HSX70336.1"
                     /translation="LGYPPYFMLRRWMRLDALSGFVLEMLVLAPLGIWLIHAYGPPAA
                     FEQAPQLWWLLPGLGLLSALAFGAMMAASRLLPLGLFGILSYVEPVLLFGVAVLFLGE
                     AFAPQQLWTYGPIWLAVLLTGWDSARLLRKQARRAT"
     gene            complement(415..957)
                     /locus_tag="VLF16_05325"
     CDS             complement(415..957)
                     /locus_tag="VLF16_05325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017938845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HSX70337.1"
                     /translation="MKPQLIYYVAVSLDGYIARPDGSVDWLEPIEASGIDHGYEDFYR
                     GIDGLLMGRATYDMLCSFGIGWPYPGKPCRVLARNPLETPAAEVKGLHCTPAEALDEL
                     AALGCQRVWLVGGGSLAGNCLAAGLLDEVVVSVIPHLLGAGIPLFASGLEQRLQLCEH
                     KAFATGVIQLRYRIETPGAD"
     gene            complement(974..1330)
                     /locus_tag="VLF16_05330"
     CDS             complement(974..1330)
                     /locus_tag="VLF16_05330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015276483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-virulence regulator CigR family protein"
                     /protein_id="HSX70338.1"
                     /translation="MRILPLALASLLILPAHSLSAAPKHDKHDKHGGDPDVTVDLRGP
                     SIDIGRVRVVLGDNRDLIGPAQSLPPGIAKRFDNRLLGQLPHYDGYEWRQVGTDVVLV
                     ALASGLIYEIIENVLD"
     gene            complement(1416..>2117)
                     /locus_tag="VLF16_05335"
     CDS             complement(1416..>2117)
                     /locus_tag="VLF16_05335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014854368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSX70339.1"
                     /translation="RQQQVEQRNALAVLFDGVAPVQMDEPQSLLHSTLPAVDAGLPAS
                     LLARRPDLRAAELRLRSSLKSVDATRASYYPDLSLTGTLGYSSAALGELLKNPVGALG
                     AGLTLPFLQYRQMQLDIDVSKTDYELAVTSFRQTLYEALADVENNLAGRRHYAEQEGM
                     RSRALQAAQEAERIYRIRYQSGAETLQSWLTAQETRRSAEITLSENHLNQLLNYINLS
                     QALGGSSSTSGVPQA"
BASE COUNT          281 a          683 c          771 g          382 t
ORIGIN      
        1 cctcggttat ccgccgtact tcatgctgcg ccgctggatg aggctggacg cgctgtccgg
       61 cttcgtcctg gaaatgctgg tgctggcgcc gctgggcatc tggctgatcc atgcgtacgg
      121 accgcccgcg gcattcgagc aggcaccgca gctgtggtgg ctgctgcccg gcctgggcct
      181 gctcagcgcc ctggccttcg gcgcgatgat ggcggccagc cgcctgctgc cgctggggct
      241 gttcggcatt ctcagctacg tggagccggt gctgctgttc ggcgtcgccg tgctctttct
      301 cggcgaggcc ttcgcgccgc agcagctgtg gacttacggg ccgatctggc tggccgtgct
      361 gctcaccggc tgggacagcg cacgcctgct gcgcaagcag gcgcggcggg caacttagtc
      421 ggcgccgggc gtttcgatcc ggtagcgcag ctggatgacg ccggtggcga acgccttgtg
      481 ttcgcacagc tgcagccgct gctcgaggcc actggcgaac agcgggatgc cggcaccgag
      541 caggtgcggg atgacgctga ccaccacttc gtcgagcagc ccggcggcca ggcagttgcc
      601 ggccaggctg ccgccgccga ccagccagac ccgctggcaa ccgagtgccg ccagttcgtc
      661 cagggcttcg gccggggtgc agtgaagtcc cttgacctcg gccgccggcg tttccagcgg
      721 gttgcgcgcc agcacgcggc agggcttgcc ggggtagggc cagccgatgc cgaagctgca
      781 cagcatgtcg taggtggcgc ggcccatcag caggccgtcg atgccgcggt agaagtcctc
      841 gtagccgtgg tcgatgccgg acgcctcgat gggctccagc cagtccacgc tgccgtccgg
      901 gcgggcgatg tagccgtcga ggctgacggc cacgtagtag atcagttgcg gcttcatggg
      961 catctcgcgg cgatcagtcc agcacgttct cgatgatctc gtagatcagc ccgctggcca
     1021 gggcgaccag cactacgtcg gtgccgacct ggcgccactc gtagccgtcg tagtgcggca
     1081 gctggccgag caggcggttg tcgaagcgct tggcgatgcc cggcggcagc gactgcgccg
     1141 ggccgatcag gtcgcggttg tcgccgagca ccacgcgcac ccggccgatg tcgatgctcg
     1201 gcccgcgcag gtcgacggtg acgtccgggt cgccgccatg tttgtcgtgc ttgtcatgtt
     1261 tgggcgccgc gctcagcgag tgcgcaggca ggatcagcag gctggcgagg gcaaggggca
     1321 ggatgcgcat gatcaactcc tgtggttgta cgggtttgga gccgcccaga tagttgtagt
     1381 tcccgttgcg cttgctcgcc tgtctccgct atcgctcagg cctggggtac gccgctggtg
     1441 gacgagctgc cgcccagtgc ctggctcagg ttgatgtagt tgagcaactg gttgaggtgg
     1501 ttctccgaca gggtgatctc ggcgctgcgc cgggtctcct gggcggtcag ccatgactgc
     1561 agcgtctcgg cgccagactg gtagcgaatc cggtagatac gctcggcctc ctgtgccgcc
     1621 tgcaatgcgc ggctgcgcat gccttcctgc tcggcgtagt gacggcggcc agcgaggttg
     1681 ttctcgacat cggccagggc ctcgtagagg gtctggcgga agctggtcac ggccagctcg
     1741 tagtcggtct tcgacacgtc gatgtcgagt tgcatctgcc ggtactgcaa gaacggcagg
     1801 gtgaggccgg caccgagggc gccgaccgga ttcttcagca gttcgcccag cgctgcgctg
     1861 gagtagccca gcgtgccggt caggctgaga tccgggtagt agctggcgcg ggtggcgtcg
     1921 acgctcttca ggctgctgcg cagacgcagt tcggcagcgc gcaggtccgg ccggcgggcc
     1981 agcagcgagg cgggcaggcc ggcgtccacc gccggcaggg tgctgtgcag caggctctgc
     2041 ggttcgtcca tctgcaccgg ggcgacgccg tcgaacagca ccgccagggc attgcgctgt
     2101 tccacctgct gctggcg
//
LOCUS       DATIHC010000331         2460 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_28937, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000331 DATIHC010000000
VERSION     DATIHC010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2460
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28937"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1373
                     /locus_tag="VLF16_05340"
     CDS             <1..1373
                     /locus_tag="VLF16_05340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSX70340.1"
                     /translation="NQGRSVVYLTTATLNGKTPSAPDSDHNYAQPWSWSQLEDTYGMV
                     SAEYDLSPSWTAYLTAGGKYTRENGIYASNYVYGANGDARIGRLYSPLDQETLSAVTG
                     LRGELATGPVSHRINLAANGIWQEKRNAFESTAAGSRGFGNLYEGQPVAEPPATSIAG
                     DIHDPDTTAKVQNRSLALSDTLGFLDDRVLLTLGVRRQSIGADAWSAASGVRTANYQE
                     SITTPAYGLVVKPTEYLSFYANRVESLQQGPTAPSAALNNGEMFAPYRSKQIEVGTKL
                     DWGTFGGSLSLFRIEQPQGVLGGDGYYRVDAEQRNRGVELSLFGEPLDGLRLLSGATW
                     TEAELRGTAGGRDDGNQAVGVPQFQFNLGADWDVPGVPGLSLNGLLLRTGGQYVDSAN
                     EYSIPAWTRVDLGARYRTQLDGRALTFNAMLENVADEDYWASANGGYLTQGAPRTLKV
                     SATVDF"
     gene            complement(1431..>2460)
                     /locus_tag="VLF16_05345"
     CDS             complement(1431..>2460)
                     /locus_tag="VLF16_05345"
                     /EC_number="2.1.1.172"
                     /EC_number="2.1.1.174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0052916 - 23S rRNA
                     (guanine(1835)-N(2))-methyltransferase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSX70341.1"
                     /translation="YLLAHLHEQGLNTDSRVLLLNDGFGALACSLAPHCRVTSSGDSH
                     LGFLALQKNLARNGLAPDSVRFVPASETPDGPIDWVLLRVPKTLALLEEQLIRLHGQL
                     APGARVIAGAMIKHLPRSAGELMERYIGPLQASLAVKKARLLTATPADKPAPTSPYPT
                     RYQLDNPALELVNHANVFCREGLDIGTRAFLPHLPKTLTHQRVADLGCGNGVLAIAFA
                     LANPQAELTLVDESYMAVQSAAENWHAALGERPATFRAADGLADQPKDSLDLVLCNPP
                     FHQQQVVGDFLAWRMFQQARAALVTGGELWIVGNRHLGYHAKLKRLFRGVEQVAATPK
                     FVVLRATK"
BASE COUNT          384 a          881 c          850 g          345 t
ORIGIN      
        1 tcaaccaggg gcgctcggtg gtctacctca ccaccgccac cctcaacggc aagacgccgt
       61 cggcgccgga ttcggaccac aactacgcgc agccgtggag ctggtcgcag ctcgaggaca
      121 cctacggcat ggtcagcgcc gagtacgacc tgtcgccgtc ctggaccgcc tacctgaccg
      181 ccggcggcaa gtacacccgg gagaacggca tctacgcctc caactacgtg tacggcgcca
      241 atggcgatgc gcggatcggc cgcctctatt cgccgctgga ccaggagacg ctgagcgccg
      301 tcaccggcct gcgcggcgaa ctggcgaccg ggccggtcag ccaccgcatc aacctggcgg
      361 ccaacggcat ctggcaggag aagcgcaacg ccttcgaatc caccgcggcg ggcagccgcg
      421 gcttcggcaa cctgtacgag ggccagcccg tcgccgaacc gccggccacc agcatcgctg
      481 gcgacatcca cgacccggac accaccgcca aggtgcagaa ccgcagcctg gcgctgtccg
      541 acaccctggg ctttctcgat gaccgggtgc tgctgaccct cggcgtgcgc cgccagtcca
      601 tcggtgccga cgcctggagc gcggccagcg gcgtgcgcac cgccaactac caggagagca
      661 tcaccacgcc agcctacggt ctggtggtca agcccaccga gtacctgtcg ttctacgcca
      721 accgcgtcga gtccctgcag cagggcccga ccgccccatc cgcggcgctc aacaacggcg
      781 agatgttcgc gccctaccgc tccaagcaga tcgaggtggg caccaagctc gactggggca
      841 ccttcggcgg cagcctcagc ctgttccgca tcgagcagcc gcagggcgtg ctcggcggcg
      901 acggctacta ccgggtggac gccgagcagc gcaaccgcgg cgtggagctg agcctgttcg
      961 gcgagccgct ggacggcctg cgcctgctga gcggcgcgac ctggaccgag gccgagctgc
     1021 gtggcactgc cggcggccgc gacgacggca accaggcggt gggcgtgccg cagttccagt
     1081 tcaacctggg cgccgactgg gacgtacccg gcgtgcccgg cctgagcctc aacggcctgc
     1141 tgctgcgcac cggcggccag tacgtcgaca gcgccaacga atacagcatc cccgcctgga
     1201 cccgcgtcga cctcggcgcc cgctaccgca cgcagctgga cggccgcgcg ctgaccttca
     1261 acgccatgct ggaaaacgtc gccgacgagg actactgggc ctcggccaac ggtggctacc
     1321 tgacccaggg cgcaccgcgc accctcaagg tatccgccac tgtcgatttc tgatcgcggg
     1381 ccgatacgca aaagggcgcc gctggcgccc tttgcatttc cccggccggc ttacttggtg
     1441 gccctgagca ccacgaactt gggcgtggcc gccacctgtt ccacgccgcg gaacaggcgc
     1501 ttgagcttgg cgtggtagcc caggtggcgg ttgccgacga tccacagctc gccgccggtg
     1561 accagcgccg cgcgggcctg ctggaacatg cgccaggcga ggaagtcgcc gaccacctgc
     1621 tgctggtgga agggcgggtt gcacagcacc aggtccagcg agtccttcgg ctggtcggcc
     1681 aggccgtcgg cggcgcggaa ggtcgccggg cgctcgccca gcgccgcgtg ccagttctcc
     1741 gcggcagact gcacggccat gtaggactcg tcgaccagtg tcagctcggc ctgcggattg
     1801 gccagggcga aggcgatggc cagcacgccg ttgccgcagc cgaggtcggc cacccgctgg
     1861 tgggtcagcg tcttcggcag gtgtggcagg aaggcgcggg tgccaatgtc caggccctcg
     1921 cggcagaaca cgttggcgtg gttgaccagc tccagggccg ggttgtcgag ctggtagcgg
     1981 gtcgggtagg gcgaggtcgg cgccggtttg tcggccggcg ttgccgtcag cagccgcgcc
     2041 ttcttcaccg ccagcgaggc ctgcagcggg ccgatgtagc gctccatcag ctcgccggcg
     2101 ctgcgcggca ggtgcttgat catggcgccg gcgatcaccc gcgcgccggg ggccagctgg
     2161 ccgtgcagac ggatcagctg ctcctccagc agggccaggg tcttgggcac gcgaagcagc
     2221 acccagtcga tcggcccgtc cggcgtctcg ctggccggta cgaagcgcac gctgtcgggc
     2281 gccaggccgt tgcgtgccag gttcttctgc agggcgagaa agcccaggtg cgagtcgcca
     2341 ctgctggtca ctcggcagtg cggcgccagc gagcaggcga gggcgccgaa gccgtcgttg
     2401 agcagcagca cgcggctgtc cgtgttcagc ccctgttcgt gcaggtgagc gagcaggtac
//
LOCUS       DATIHC010000332         1571 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_3272, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000332 DATIHC010000000
VERSION     DATIHC010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1571
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3272"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..129
                     /locus_tag="VLF16_05350"
     CDS             <1..129
                     /locus_tag="VLF16_05350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused response regulator/phosphatase"
                     /protein_id="HSX70342.1"
                     /translation="ALPKLVSEAGGTLDGLRQVFGLANLRDMPDDIALLVLSRNLA"
     gene            126..620
                     /gene="rssC"
                     /locus_tag="VLF16_05355"
     CDS             126..620
                     /gene="rssC"
                     /locus_tag="VLF16_05355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010485306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor antagonist RssC"
                     /protein_id="HSX70343.1"
                     /translation="MNPGNSPGRIQFAEQDGTFVLKFVGEVRLTLCSALDSTIEKIFS
                     ALNFSAIVIDLTETRSIVSTTLGLLAKLSILSRQKIGLLPTVVTTHEDITRLLQSMGF
                     DQVFNIVDRPIPCPECLSDLPSQDQSEEVVKAKVLEAHRILMGLNESNREAFHDLVSA
                     LERS"
     gene            complement(688..>1571)
                     /gene="tal"
                     /locus_tag="VLF16_05360"
     CDS             complement(688..>1571)
                     /gene="tal"
                     /locus_tag="VLF16_05360"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003454193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004801 - transaldolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HSX70344.1"
                     /translation="VADTGDLDAISRLKPVDATTNPSLLLKAAALPRYAELLDQAVSG
                     CDGDLGLACDRFGVAVGQEILKVIPGRISTEVDARLSFDTQATLRRAERIVDLYERAG
                     IGRERVLIKIASTWEGIRAAEQLEKAGVQTNLTLLFSFAQAVACAEAGVFLISPFVGR
                     IYDWYKKAEGRDFVGAEDPGVKSVSRIYQYYKANGYPTVVMGASFRNLGQIEQLAGCD
                     RLTISPDLLQQLADDQGELPRLLNAGTGEPRQTLDEGAFRWALNEDAMATEKLAEGIR
                     LFARDQEKLEALLAARR"
BASE COUNT          271 a          500 c          522 g          278 t
ORIGIN      
        1 gcgctgccga aactggtcag cgaggcgggt ggcaccctag acgggttgcg tcaggtattc
       61 ggcctggcca atctgcggga tatgccggat gatattgcct tgctggtgtt gagcaggaac
      121 cttgcatgaa tcctgggaat agccccggta ggatccagtt cgccgagcag gacggaacct
      181 tcgttctgaa gttcgtcggc gaagtccgcc tgaccctgtg ttcggcgctg gattcaacga
      241 tcgaaaaaat cttctcggcg ctgaatttct cggcgatcgt catcgatctg acggaaaccc
      301 gtagcatcgt tagcaccacc cttggcctgc tggccaagct ctcaatcctg tcccggcaaa
      361 agatcggcct gttgcccacc gtggtcacca cccacgagga catcacccgc ctgctgcagt
      421 cgatgggctt cgatcaggtg ttcaacatcg tcgaccgccc catcccctgt ccggagtgcc
      481 tgagcgacct gccgtcccag gaccagtcgg aagaggtggt caaggccaag gtgctcgagg
      541 cgcatcgcat cctgatggga ctcaacgagt ccaaccgcga agccttccac gacctggtga
      601 gcgcgctgga gcgcagctga gcgaaccgaa ggtcatgaaa aaggggcgat atccgcgagg
      661 ataccgcccc tttcgtttgc gcggggatca gcgccgagcg gccagcagcg cctccagctt
      721 ctcctggtcg cgggcgaaca ggcggatgcc ctcggccagc ttctcggtgg ccatggcatc
      781 ctcgttcagg gcccagcgga aggcgccttc gtccaatgtc tgacgcggct cgccggtgcc
      841 ggcattcagc aggcgcggca gttcgccctg gtcgtcggcc agttgctgca gcaggtcggg
      901 gctgatggtc aggcgatcgc aaccggccag ctgttcgatc tggccgaggt tgcggaagct
      961 cgcgcccatc accaccgtcg ggtagccgtt ggccttgtaa tactggtaga tgcgcgacac
     1021 ggacttcacg cccgggtcct cggcaccaac gaagtcgcgc ccctcggcct tcttgtacca
     1081 gtcgtagatc cggccgacga agggggagat gaggaacacg ccggcctcgg cgcaggccac
     1141 ggcctgggcg aaggagaaca gcagcgtcag gttggtctgc acgccggcct tctccagctg
     1201 ctcggcggcg cggatgcctt cccaggtcga ggcgatcttg atcagcacgc gctcgcggcc
     1261 gatgccggcc cgttcgtaca ggtcgacgat acgttcggcg cggcgcaggg tggcctgggt
     1321 atcgaaggac aggcgagcgt ccacctcggt ggagatgcgc cccggaatca ccttgagaat
     1381 ctcctggccg accgccacgc cgaagcggtc gcaggccagg ccaaggtcgc cgtcgcagcc
     1441 gctcacggcc tggtccagca gctcggcata gcgcggtagc gcggcggcct tgagcaggag
     1501 ggaagggttg gtggtggcgt ccaccggctt gagccggctg atggcgtcca ggtcgccggt
     1561 gtcggcgacc a
//
LOCUS       DATIHC010000333         3669 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_40627, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000333 DATIHC010000000
VERSION     DATIHC010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3669
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40627"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(151..690)
                     /locus_tag="VLF16_05365"
     CDS             complement(151..690)
                     /locus_tag="VLF16_05365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaeQ family protein"
                     /protein_id="HSX70345.1"
                     /translation="MALQATPYKVELNLTDLDRNVYENLRFTVAKHPSETEERLGVRL
                     IAYALWYHEQLAFGRGLSDVDEPALWEKSLDDRVLHWIEVGQPDAERITWCSRRTERF
                     SLVAYGNLRVWQNKVLDGVRSLKNINVVGVDQEALENLARDLPRAISWSVMISDGLLY
                     VTDERGQHEIPLEWLHGER"
     gene            complement(741..1886)
                     /locus_tag="VLF16_05370"
     CDS             complement(741..1886)
                     /locus_tag="VLF16_05370"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HSX70346.1"
                     /translation="MQLNLATLVLLDIYILLLVGVLMLHAWSRGRDSTLGYLAAALLI
                     GAAGTVVGSLRGIGVDWVPILLGNVLVLASAALAWTALRVFAGRRPSRAGMLAGALVW
                     LALCLVPAFYQSLPIRITTGSLLLAGYAALGAWELWRSRRRLEVDIRPALVLTLIHTG
                     FYTVRAFFDDNLPFDPSGASTHFFALVVLETLLYVIGLAFVTLAMVKERAELRYKSAA
                     LRDPLTGIGNRRAFVEAAECQLDVCARLRRPAVLLLCDLDHFKRLNDNFGHATGDQAL
                     AEFGRILASRSRQQDLCARIGGEEFVCLLAEADATAALALAERIRSEFAEMPFVAEGQ
                     LSVSIGIAEAQLADYELTRLLSLADQALYAAKAAGRNRVELYRAEPR"
     gene            2083..3279
                     /locus_tag="VLF16_05375"
     CDS             2083..3279
                     /locus_tag="VLF16_05375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HSX70347.1"
                     /translation="MIPSKPLAGLKVVELGTLIAGPFASRICAEFGAEVIKVESPDGG
                     DPLRKWRKLYEGTSLWWFVQARNKQSITLNLKHEAGREVLKKLLSEADILIENFRPGV
                     LEKLGLGWDVLHALNPKLVMVRLSGFGQSGPMQDQPGFGAVGESMGGLRYITGFEDRP
                     PVRTGISIGDSIAALWGVIGALMALRHREVNGGNGQVVDVALYEAIFAMMESMVPEFD
                     VFGFIRERTGNIMPGITPSSIHTCGDGKHIQIGANGDAIFQRFMRAIDRGDLADDPTL
                     ADNAGRDARRDEIYGVIDRWAASLPLSEIEAVLVRAEVPASRIYSAEDMFKDPQFLAR
                     EMFLSAQLPDGKPFKMPGIVPKLSETPGGVEWTGPQLGEHNQAVLSRLGYSAEQIAAL
                     KDGGAI"
     gene            3281..3667
                     /locus_tag="VLF16_05380"
     CDS             3281..3667
                     /locus_tag="VLF16_05380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70348.1"
                     /translation="MHRSITLLLASLVIAPSAALFISLLTGSLRQQRLALEWPQLIDS
                     NDYSVSALLIATVPGMLAFLLAGTFLRRKAMLVIAFICCALLACTFAAALFAQAFGNT
                     WSTHEIILELVIAHWHLVALALLPGC"
BASE COUNT          630 a         1228 c         1219 g          592 t
ORIGIN      
        1 cgcatggggt gttccgattg ttctgctagg cgggccgata gcggcgcgga aggctccctc
       61 tcccttggga gagggttggg gagagggaag ctccgtgcag gagatcagcc cctcatccct
      121 ggcccctctc ccatcggaga ggggaaacga tcagcgctcg ccgtgcagcc actccagcgg
      181 aatctcgtgc tggccgcgtt cgtcggtaac gtagagcagg ccgtcgctga tcatcacgct
      241 ccagctgatc gcgcgtggca ggtcgcgggc caggttctcc agggcttcct ggtcgacgcc
      301 gaccacgttg atgttcttca ggctgcgcac gccgtcgagt accttgttct gccacacacg
      361 caggttgccg taggccacca ggctgaagcg ctcggtgcga cgcgaacacc aggtgatgcg
      421 ctcggcatcc ggctggccga cctcgatcca gtgcagcacg cggtcgtcca ggctcttctc
      481 ccacagcgcc ggctcgtcga cgtcggacag gccgcggccg aaggccagtt gctcgtggta
      541 ccacagggcg taggcgatca ggcgcacgcc caggcgctct tcggtctccg aggggtgctt
      601 ggccacggtg aagcgcaggt tctcgtagac gttgcggtcg aggtcggtga ggttcagttc
      661 gactttgtag ggcgtggctt gcagggccat gggcgggctt cttggctgat cgggaaggcg
      721 gcaagtctac ccgattcgtc tcagcgcggc tccgcccggt acagctccac gcggttgcgc
      781 ccggcggcct tggccgcgta gagcgcctgg tcggccagcg acagcaggcg ggtcagctcg
      841 tagtcggcca gctgcgcctc ggcaatgccg atgctcacgc tgagctgccc ctcggcgacg
      901 aacggcatct cggcgaattc gctgcgaatg cgctcggcca gcgccagcgc cgccgtggca
      961 tcggcctccg ccagcaggca gacgaactcc tcgccgccga tgcgcgcgca caggtcctgc
     1021 tggcgggaac ggctggcgag gatgcgaccg aactcggcaa gcgcctggtc gccggtggcg
     1081 tggccgaagt tgtcgttgag ccgcttgaaa tgatccaggt cgcagagcag cagcaccgcc
     1141 gggcgacgca ggcgggcgca gacatccagc tggcattcgg ccgcctcgac gaaggcgcgg
     1201 cggttaccga tgccggtcag cggatcgcgc agggccgcgc tcttgtaacg cagctcggcg
     1261 cgctccttga ccatcgccag ggtgacgaac gccaggccga tgacatacag cagcgtctcc
     1321 agcaccacca gcgcgaagaa gtgcgtgctc gccccgctcg ggtcgaacgg caggttgtcg
     1381 tcgaaaaacg cgcgcaccgt gtagaagccg gtgtggatca gcgtcagcac cagcgccgga
     1441 cggatgtcca cctccagccg ccgccggctg cgccacaact cccaggcgcc gagcgcggcg
     1501 tagccggcca gcagcaacga gccggtggtg atgcgtatcg gcagcgactg gtagaaggcc
     1561 ggcaccaggc acagcgcaag ccagaccagc gcgccggcca acatcccggc gcggctgggc
     1621 cggcggccgg cgaacacccg caacgccgtc caggccaggg ctgcgctcgc caggaccaac
     1681 acgttgccga gcaggatggg cacccagtcg acgccgatac cccgcaggct gcccaccacc
     1741 gtgccggccg caccgatcag cagcgccgcc gccagatagc ccagggtgct gtcgcgcccg
     1801 cggctccagg catgcagcat cagcacgccg acgagcagca gaatgtagat gtccagcagc
     1861 accagcgtgg cgagattcag ctgcatgaca cgccgcctcc gaatccgggg cgacgctcta
     1921 ataggggaga catgagaaaa atactaaaca agcggtcaac aaaccgaaca ctgtacgtgg
     1981 cgcgtggggg caacgccaga gctggtcatc agatgcttgc ggccgctctc ccgacgcgga
     2041 catcatgtgt cagctcaggc tgatcaatca tatggagcca cgatgatccc cagcaaaccc
     2101 ctcgccggcc tgaaagtggt cgagctcggc accctgatcg ccgggccttt cgcctcgcgc
     2161 atctgcgccg agttcggtgc ggaggtgatc aaggtcgagt cgccggatgg cggcgatccg
     2221 ctgcgcaagt ggcgcaagct gtacgagggc acctcgctgt ggtggttcgt gcaggcgcgc
     2281 aacaagcagt cgatcacgct caacctcaag cacgaggccg gtcgcgaggt gctgaagaag
     2341 ctgctgagcg aagccgacat cctgatcgag aacttccgcc ccggcgtgct ggaaaagctc
     2401 ggcctgggct gggacgtgct gcatgcgctg aatccgaagc tggtgatggt gcgcctgtcc
     2461 ggcttcggcc agagcggacc gatgcaggat cagccgggct tcggcgcagt cggcgagtcc
     2521 atgggcgggc tgcgctacat caccggcttc gaggaccgtc cgccggtacg caccggcatc
     2581 agcatcggcg actccatcgc cgcgctgtgg ggcgtgatcg gcgcgctgat ggcgctgcgc
     2641 caccgcgagg tgaatggcgg taatggccag gtggtggatg tggcgctgta cgaggcgatc
     2701 ttcgccatga tggagtcgat ggtgccggag ttcgacgtgt tcggcttcat ccgcgagcgc
     2761 accggcaaca tcatgcccgg catcacgccc tcctctattc atacctgcgg cgacggcaaa
     2821 catatccaga tcggcgccaa cggcgatgcg atcttccagc gtttcatgcg cgccatcgac
     2881 cgcggcgatc tggccgacga cccgacgctg gccgacaacg ccggccgcga tgcacgccgc
     2941 gacgagattt atggagtcat cgatcgctgg gccgccagcc tgccattgag cgagatagag
     3001 gccgtgctgg tgcgtgccga agtgccggcc agccgcatct actccgccga ggacatgttc
     3061 aaggacccgc aattcctcgc ccgcgagatg ttcctctcgg cccagctgcc ggatggcaaa
     3121 ccattcaaga tgcccggcat cgtacccaag ctgtcggaaa cccccggcgg cgtggagtgg
     3181 accggcccgc agctgggcga gcataaccag gcggtgctga gccgcctcgg ctacagcgcc
     3241 gagcagatcg cggcgctgaa ggatggcggc gcgatctgag atgcatcgct ccatcactct
     3301 gctgctggca agcctggtca tcgctcccag cgccgcgctg ttcatcagcc tgctcaccgg
     3361 cagcctgcgc cagcagcgcc tggccctgga atggccgcag ctgatcgaca gcaatgacta
     3421 ctccgtgagc gcactgctga tcgccacagt gcccggcatg ctggctttcc tgctggcggg
     3481 tacctttctg cgccgcaagg ccatgctggt catcgccttt atctgctgcg cgctgctggc
     3541 ctgcactttc gcggcagccc tcttcgccca ggcttttggc aacacctgga gcacccacga
     3601 gatcatcctc gaactggtga ttgcacactg gcacctggtt gccctggcgc tgctgcccgg
     3661 ctgctgatc
//
LOCUS       DATIHC010000334         2121 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10254, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000334 DATIHC010000000
VERSION     DATIHC010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2121
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10254"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1182
                     /locus_tag="VLF16_05385"
     CDS             <1..1182
                     /locus_tag="VLF16_05385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016498005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HSX70349.1"
                     /translation="ALAKAVPPRYFAEVEPGVYMLRAPLVVMQGATLHIDKATKDFRM
                     STDRGAFLINDGKLFVTDTRVTAWREAENKQDWFEKKGEFRPFINAWGGTETYVVGST
                     ISSLGYTASKSYGFSISQYSPSMHPKMQRGHPTGWLLNSVWDDMWYGFYCYEADDVVI
                     RGNTYRNNLVYGIDPHDRSRRLIIAENTAYGTVQKHGIIVSREVNDSWIFNNKSHDNH
                     LSGIVIDRSSVNNVIAYNETYRNKSDGVTIYESGNNLLWGNKAYNNERHGIRVRNSMN
                     IKLYENLVVSNGKLGVYGHVKDLSNTDRDILLDPFETNISMLIVGGKLVANSSGPMGV
                     DSPLSLELYRVEMLSPTKSSGITLPGVLGTYQDEILDLMLRQDKPVLIDYLGADMEAK
                     R"
     gene            1179..>2121
                     /locus_tag="VLF16_05390"
     CDS             1179..>2121
                     /locus_tag="VLF16_05390"
                     /inference="COORDINATES: protein motif:HMM:NF028132.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alginate O-acetyltransferase"
                     /protein_id="HSX70350.1"
                     /translation="MSTVFKSRCGLTLGLLFSASVGAAEFPTYDIEQVGKLCPAAAHQ
                     SSYTTKELDFHSILIDGQDGWLFRTKNDLRVDIGTTPDGYAKLKRFRDALKARGTELL
                     VVFQPTKGLVNRSKLTPEWQAKYDWEAARASYVKTIAEFRKIGIWAADYSPLFDEKDA
                     EHAYFFKDDNHWTPSGAKRTAKLTAEVLKQIPAYDDIAKKEFVTKRVGILRSPGGSGE
                     AAGKICGNGYGFQYVDRFATEPADESSGDSLFGDESTPEVILVGTSNSGEKYNFAGYL
                     EQYSGVQVMNMAVTGGGYEAAMLQLLASEEFQANPPKI"
BASE COUNT          459 a          692 c          626 g          344 t
ORIGIN      
        1 gcactggcca aggccgtgcc gcctcgctac ttcgccgagg tcgaaccggg cgtatacatg
       61 ctgcgcgccc cgctggtggt gatgcagggc gcgaccctgc acatcgacaa ggccaccaag
      121 gacttccgca tgtccacgga ccgtggcgcc ttcctcatca acgacggcaa gctgttcgtc
      181 accgacaccc gggtcaccgc ctggcgcgag gcggagaaca agcaggactg gttcgagaag
      241 aaaggcgagt tccgaccctt catcaacgcc tggggcggta ccgagaccta cgtcgtcggc
      301 tcgacgatct caagcctcgg ctataccgcg agcaagtcct acggcttctc gatttcccag
      361 tacagcccgt cgatgcatcc gaagatgcag cgcggccatc ccaccggctg gctgctcaac
      421 tcggtgtggg acgacatgtg gtacggcttc tactgctacg aggccgacga cgtggtgatc
      481 cgcggcaaca cctaccgcaa caacctggtc tatggcatcg acccgcacga ccgttcgcgg
      541 cgcctgatca tcgccgagaa caccgcctac ggcacggtgc agaagcacgg catcatcgtc
      601 tcgcgcgagg tcaacgacag ctggatcttc aacaacaagt cccacgacaa ccacctgtcc
      661 gggatcgtca tcgaccgtag cagcgtcaac aacgtcatcg cttacaacga gacgtaccgc
      721 aacaagtcag atggcgtgac catctacgag agcggcaaca acctgttgtg gggcaacaag
      781 gcctacaaca acgagcgcca cggcatccgc gtacgcaaca gcatgaacat caagctgtac
      841 gagaacctgg tggtgagcaa cggcaagctc ggtgtctacg gccacgtaaa agacctcagc
      901 aacaccgacc gcgacatcct gctcgacccc ttcgagacca acatctcgat gctcatcgtc
      961 ggcggcaagc tggtggccaa ctcctccggc cccatgggcg tggactcgcc gttgagcctc
     1021 gagctgtacc gcgtggagat gctctcgccg accaagagct ccggcatcac cctgccgggc
     1081 gtgctgggca cctatcagga cgaaattctc gatctgatgt tgcgccagga caaacccgta
     1141 ttgatcgact acctcggcgc ggacatggag gccaaacgat gagcaccgtt ttcaagagcc
     1201 gttgcggcct gaccctgggc ctgctgtttt ccgcctctgt cggagcagcg gaattcccga
     1261 cctacgatat cgagcaggtg ggcaagctgt gcccggccgc ggcccatcag tccagctaca
     1321 ccaccaagga actggacttc cacagcatcc tgatcgatgg ccaggatggc tggctgttcc
     1381 gtaccaagaa cgacctgcgt gtcgacatcg gcaccacgcc cgacggctac gccaagctca
     1441 agcgttttcg cgacgccctg aaggcccgcg gcaccgagct gctcgtggta ttccagccca
     1501 ccaaggggct ggtcaaccgc agcaagctga cccccgagtg gcaggccaag tacgactggg
     1561 aagccgcgcg cgccagctac gtcaagacca tcgccgagtt ccgcaagatc ggcatctggg
     1621 cggcggacta ttcgccactg ttcgacgaga aggatgcgga gcacgcgtac ttcttcaagg
     1681 acgataacca ctggacgccc agcggagcca agaggaccgc gaagctgact gccgaagtgc
     1741 tgaagcagat tccggcctat gacgatatcg cgaagaagga attcgtgacc aagcgcgtcg
     1801 gcatcctgcg cagccccggt ggttccggag aggccgcggg caagatctgc ggcaatggct
     1861 acggcttcca gtatgtcgat cgttttgcca cggagccggc tgacgagagc tctggcgaca
     1921 gcctgttcgg cgatgagtcc acgcccgagg tgatactcgt cggcaccagt aacagcggcg
     1981 agaaatacaa cttcgccggc tacctggagc agtacagcgg cgtgcaggtc atgaacatgg
     2041 ccgtgaccgg cggtggctac gaggcggcga tgctgcaact gctggccagc gaggagttcc
     2101 aggccaaccc gcccaagatc g
//
LOCUS       DATIHC010000335         2494 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19560, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000335 DATIHC010000000
VERSION     DATIHC010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2494)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2494)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2494
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19560"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            97..876
                     /gene="yaaA"
                     /locus_tag="VLF16_05395"
     CDS             97..876
                     /gene="yaaA"
                     /locus_tag="VLF16_05395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HSX70351.1"
                     /translation="MLLVISPAKTLDYDTPPPIGRFTQPEHLDHAQELIGQLREMSPQ
                     QIGELMHLSDKLAALNVARYGSWQRPFNPSNAKQALLAFKGDVYTGLAAEDFAEADFD
                     FAQAHLRMLSGLYGVLRPLDLMQPYRLEMGTKLANARGNNLYDFWGERISGWLNEALA
                     AQGDDILLNLASNEYFGAVKRKALNARLIDTEFKDLKNGQYKIISFYAKKARGLMARY
                     VIKERIRDPERLKAFDYQGYRYSAEQSTPDSLVFLRDHSED"
     gene            955..1785
                     /locus_tag="VLF16_05400"
     CDS             955..1785
                     /locus_tag="VLF16_05400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSX70352.1"
                     /translation="MTQPVVLITGCSSGIGRALADAFKAADYQVWACARKPQDLATLA
                     AAGFVAVALDVNDAIAVQRAAERVQAEAGRLDVLINNAGYGAMGPLLDGGAEGMRRQF
                     ETNVFSLVELTRACFPLLRASRGLVINIGSISSVLITPFAGAYCASKAAVHALSGALR
                     MELAPFGIQVMEVQPGAIASSFGANASQSAEELVNEQSPWWPVREGIRARANASQEDP
                     TPASEFAATLLAAVRQSERPALLRIGNGSRKLPLMARLLPRKLMERLMSKRFGLDSPL
                     "
     gene            1817..2167
                     /locus_tag="VLF16_05405"
     CDS             1817..2167
                     /locus_tag="VLF16_05405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009313425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70353.1"
                     /translation="MATYWGATAAAFLLNVLLRVPLKIGGMPATLLAALLSAWALRAA
                     FAWFEKRRPQTQERWALVALHALFLGLLYLLLWGLMWLRDEPGTMGQLIFVLHYLCYP
                     ATLALVLHLWRPQR"
     gene            complement(2169..>2494)
                     /locus_tag="VLF16_05410"
     CDS             complement(2169..>2494)
                     /locus_tag="VLF16_05410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003449538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70354.1"
                     /translation="TAYRAAQRQWPDEPLPGFALANLLHGTGDRAGAERQLHESLSRR
                     GDFAAGWFNLSEMLNERGCVSQASAARACARRLAPDNSRMQAPLSAAGTAVGECRVLP
                     DCPGR"
BASE COUNT          413 a          912 c          777 g          392 t
ORIGIN      
        1 ggcatattcg aggccgatct ggtcaatcgt cctcataggt agagccgggg acgccatcca
       61 gcctagaatc gcgccacgct ttctggagac gattcgatgc tgttggtgat ttcccccgcc
      121 aagaccctgg actacgacac cccaccgccc attggccgct tcacccagcc cgagcacctg
      181 gaccatgccc aggagctgat cggccagctg cgcgaaatga gcccgcagca gatcggcgag
      241 ctgatgcacc tgtcggacaa gctggccgcg ctcaacgtgg cgcgctatgg cagctggcag
      301 cggccgttca acccgtccaa cgccaagcag gcgctgctgg cgttcaaggg cgacgtgtac
      361 accggcctgg ccgccgaaga cttcgccgag gccgatttcg acttcgcaca agcgcacctg
      421 cgcatgctct ccggcctgta cggcgtgctg cgcccgctcg acctgatgca gccgtaccgc
      481 ctggagatgg gcaccaagct ggccaacgcc cgcggcaaca acctctacga cttctggggc
      541 gagcgcatca gcggctggct caacgaggcg ctggccgcac agggcgacga catcctgctc
      601 aacctggcct ccaacgagta cttcggcgcg gtcaagcgca aggccctgaa tgcgcggttg
      661 atcgacaccg agttcaagga cctgaagaac ggccagtaca agatcatcag cttctacgcc
      721 aagaaggccc gcggcctgat ggcgcgctac gtgatcaagg agcgcatccg cgatcccgag
      781 cggctcaagg ccttcgacta ccagggctat cgctacagcg ccgagcagtc cacgccggac
      841 agcctggtgt tcctgcgcga ccattcagag gactgatctg gccgccgcgg tcagtacgtc
      901 gccaccgcga atggttatga tcgggcttcc ttcagcgcga gacgaggagt gcccatgacc
      961 cagcccgtag tcctgatcac cggttgctcc agcggcatcg gccgcgccct ggccgatgcc
     1021 ttcaaggccg ccgactacca ggtctgggcc tgcgcccgca aaccccagga cctcgccacg
     1081 ctggccgccg ccggcttcgt cgcggtagcg ctggacgtca acgacgccat cgccgtgcag
     1141 cgcgccgccg aacgcgtgca ggccgaggcc gggcgcctgg acgtgctgat caacaacgcc
     1201 ggctacggcg ccatggggcc gctgctggat ggcggcgccg agggcatgcg ccggcagttc
     1261 gagaccaacg tgttcagcct ggtcgaactt acccgcgcct gcttcccgct gctgcgcgcc
     1321 agccgcggcc tggtgatcaa catcggcagt atctccagcg tgctgatcac gcccttcgcc
     1381 ggcgcctact gcgcctccaa ggccgccgtg cacgcgctct ccggcgcact gcgcatggag
     1441 ctggcgccat tcggcattca ggtcatggaa gtgcagccgg gcgccatcgc gtccagcttc
     1501 ggcgccaacg ccagccagag cgccgaggag ctggtcaacg agcaatcacc ctggtggccg
     1561 gtacgcgaag gcattcgcgc ccgcgccaac gcctcgcagg aagatccgac cccggccagc
     1621 gagttcgccg ccaccctgct cgccgccgtg cggcagagcg agcgcccggc cctgctgcgc
     1681 atcggcaacg gcagccgcaa gttgccgctg atggcacgcc tgctgccgcg caagctcatg
     1741 gagcgcctga tgagcaagcg cttcggcctc gactccccac tctgagccac ccggatgcca
     1801 cgccgctttc cgctctatgg ctacgtactg gggtgcgacg gcggcagcct tcctgctcaa
     1861 cgtcctgctg cgcgtgccac tgaagatcgg cggcatgccc gccaccctac tggcagcgct
     1921 gctcagcgcc tgggcattgc gcgcagcctt cgcctggttc gagaagcgtc gccctcagac
     1981 gcaggagcgc tgggccctgg tggcgctgca cgcgctgttc ctcggcctgc tctacctgtt
     2041 gctctggggt ctgatgtggc tccgggacga gccgggcacc atgggccaac tgatcttcgt
     2101 cctgcactac ctctgttacc cggccaccct ggcgctggtg ctgcacctct ggcgcccgca
     2161 gcgctagctc agcgccctgg gcaatccggc aatacccggc actcgcctac cgcagtaccg
     2221 gctgccgaca gcggcgcctg catacgcgag ttgtccggcg ccaggcgccg cgcacatgcc
     2281 ctggcggcgc tggcctggga cacgcaacca cgttcgttga gcatttccga caggttgaac
     2341 cagccggccg caaagtcacc acgccgactc aggctctcat gcaactgccg ctccgcaccg
     2401 gcacgatcgc ccgtcccatg cagcagattg gccagggcga aaccgggcaa cggctcgtcc
     2461 ggccactggc gctgcgcggc tcgataggcg gtgg
//
LOCUS       DATIHC010000336         1626 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_40634, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000336 DATIHC010000000
VERSION     DATIHC010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1626
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40634"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..172
                     /locus_tag="VLF16_05415"
     CDS             <1..172
                     /locus_tag="VLF16_05415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HSX70355.1"
                     /translation="IYTPLTSRIAHLVVIDVLAMGVAMARGPDLVNHLKSVKRSLRSL
                     RLSPKSVRSAEE"
     gene            292..492
                     /locus_tag="VLF16_05420"
     CDS             292..492
                     /locus_tag="VLF16_05420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003457899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HSX70356.1"
                     /translation="MNLHLEEPVHDSKTRRKLEDQRRMAFRRAIEDYAEQRRLQQELG
                     GYPDLLPADFLPITRSPQRHAA"
     gene            598..1605
                     /locus_tag="VLF16_05425"
     CDS             598..1605
                     /locus_tag="VLF16_05425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008018642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ldh family oxidoreductase"
                     /protein_id="HSX70357.1"
                     /translation="MTRLTLTEAHELAADILRHAGFSEAFVQAIAATVTAGERDGCTS
                     HGLWRLLGIVRTLKSGKAVADAEPEVIDQAPSLVRVDAHGGFSQLAFAAGLPLLADKA
                     RRNGIAAMAINRCVHFSALWAEMEAITELGLVALACNPTQAYVAPAGGSRPLFGTNPI
                     AFGWPRAGGHPFVFDFATSAVARGEIELHRRSGAPLPAGWGVDRSGQPSSEAAEVLDH
                     GAMLTFGGHKGSALSAMIELIAGPLIGDLTSLESGAFDGGVNALPYHGELIIALDPQR
                     FLGEQADQHLARAEALFEAIQGQGARLPSQRRYEARAKSLAEGVEISDGLYRDLQALL
                     A"
BASE COUNT          251 a          596 c          547 g          232 t
ORIGIN      
        1 gatctacacc ccgctgacct cgcgcatcgc ccatctggtg gtgatcgacg tgctggccat
       61 gggcgtggcc atggcccgcg gcccggacct ggtcaaccac ctcaagagcg tcaagcgcag
      121 cttgcgcagc ctgcgcctgt cgcccaagtc ggtgcgcagc gcggaagaat aggacggcaa
      181 gtcccggccg ttcggcatcg atcggtcacg caagattcat cggcgcgccg ccaaagcgta
      241 acgccggcgc gcgcaagctg agctccggca aacggatcag gagccgccgc gatgaacctg
      301 catctcgaag aacccgtcca cgacagcaag acccgccgca aactggaaga ccagcgccgc
      361 atggccttcc gccgcgccat cgaggactac gccgagcagc gccggctgca acaggagctc
      421 ggtggctatc ccgatctgct ccccgccgat ttcctaccga tcacgcgcag cccgcaacgc
      481 cacgcggctt gagccctgtg cgcggtgtgc cgaattcggc atgccgcgcg tgcaaagcga
      541 tcaagcctcg gcgtcgccga cgggccactg taacgggcag actgccagga gcccgttatg
      601 acccgactga ccctgaccga ggcccatgag ctggccgccg acatcctgcg ccacgccggt
      661 ttcagcgagg ccttcgtgca ggccatcgcc gccaccgtga cggccggcga gcgcgacggc
      721 tgcacctccc atggtctgtg gcgcctgctc ggcatcgtgc gcacgctcaa gtccggcaag
      781 gcggtggccg acgccgagcc cgaggtgatc gaccaggcgc cgtcgctggt gcgggtcgac
      841 gctcatggcg gcttctccca gctggccttc gccgccggcc tgccgctgct ggccgacaag
      901 gcccggcgca atggcatcgc cgccatggcg atcaaccgct gcgtgcactt ctccgcgctg
      961 tgggcggaga tggaggcgat caccgagctg ggcctggtgg cgctggcctg caacccgacc
     1021 caggcgtatg tggcgccggc cggcggcagc cgcccactgt tcggcaccaa ccccatcgcc
     1081 ttcggctggc cgcgggccgg cggtcatccc ttcgtcttcg acttcgccac cagcgccgtg
     1141 gcccgtggcg agatcgaact gcaccgccgc tccggcgcgc cgctgcctgc cggctggggc
     1201 gtggaccgca gcggccagcc gagcagcgag gccgccgagg tgctcgatca cggcgccatg
     1261 ctgaccttcg gcgggcacaa gggctcggcc ctgtcggcga tgatcgagct gatcgccggg
     1321 ccgctgatcg gcgacctgac cagcctcgag tccggcgcct tcgacggcgg cgtgaatgcc
     1381 ctgccgtacc acggcgaact gatcatcgcc ctcgacccgc aacgcttcct cggtgagcag
     1441 gccgaccagc acctggcccg cgccgaagcg ctgttcgagg cgatccaggg ccagggtgcg
     1501 cggctgccgt cccagcgccg ctacgaggcg cgggcgaaga gcctggcgga aggtgtggag
     1561 atcagcgacg gcctgtaccg cgatctgcaa gcgctgctgg cttagggtgt cgtttgacgc
     1621 agcgcg
//
LOCUS       DATIHC010000337         2143 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7894, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000337 DATIHC010000000
VERSION     DATIHC010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7894"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..763)
                     /locus_tag="VLF16_05430"
     CDS             complement(<1..763)
                     /locus_tag="VLF16_05430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252310.1"
                     /note="This protein performs the mismatch recognition step
                     during the DNA repair process; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HSX70358.1"
                     /translation="MSDLSAHTPMMQQYWKLKNQHPDMLMFYRMGDFYELFYEDAKKA
                     AALLDITLTARGQSAGQAIPMAGIPFHSAEGYLARLVKFGEAVAICEQIGDPATSKGP
                     VERQVVRIITPGTISDEAFLDERRDNLVGAILGDEKLFGLAVLDITSGRFSVQELKTW
                     ENLLAELERLAPAELLIPDDWPQGLPLEKRRGVRRRAPWDFERDSARKSLCQQFGVQD
                     LKGFGCEGLTLAIGAAGCLLVYAKETQRTALPHLRN"
     gene            839..1342
                     /locus_tag="VLF16_05435"
     CDS             839..1342
                     /locus_tag="VLF16_05435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003294966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HSX70359.1"
                     /translation="MDSRITLQAEALGSRLKALGAQVTTAESCTGGGIAEAVTRIAGS
                     SAWFEAGFITYSNTQKTAQLDVPAELFARVGAVSREVVEAMVSGAQQRSGARFAVAVS
                     GIAGPAGGSAEKPVGTVWLAWGDGTKLFTERCLFVGDRDEVRRQTVARALDGLLRLTA
                     GENPAQG"
     gene            1430..>2143
                     /gene="recA"
                     /locus_tag="VLF16_05440"
     CDS             1430..>2143
                     /gene="recA"
                     /locus_tag="VLF16_05440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HSX70360.1"
                     /translation="MDENKKRALAAALGQIEKQFGKGAVMRMGDHERQAIPAISTGSL
                     GLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKAGATCAFVDAEHALDPDY
                     AGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
                     AHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYA
                     SVRLDIRRTGAVKEGDEVVG"
BASE COUNT          374 a          661 c          719 g          389 t
ORIGIN      
        1 ggttgcgcag gtgcggcagg gcggtgcgct gggtttcctt ggcgtagacc agcaggcagc
       61 cggcggcgcc aatggcgagc gtcaggcctt cgcagccgaa acccttgagg tcctgcacgc
      121 cgaactgctg gcacaggctc ttgcgtgcgc tgtcgcgctc gaaatcccag ggcgctcggc
      181 ggcgcacgcc gcggcgtttc tccagaggca ggccttgcgg ccagtcgtcg ggaatcagca
      241 gctcggccgg cgccaggcgc tccagctcgg ccagcaggtt ctcccaggtt ttcagctcct
      301 gcacgctgaa gcggccgctg gtgatatcca gcacggccag gccgaacagc ttctcgtcac
      361 ccaagatggc gccgaccagg ttgtcgcggc gttcgtcgag gaaggcctcg tcgctgatgg
      421 taccaggggt gataatgcgc accacttggc gttccacagg ccccttgctg gtggccgggt
      481 cgccgatctg ctcgcagatc gccaccgcct cgccgaactt caccaggcgc gccaggtagc
      541 cttcggccga gtggaagggg atgccggcca tgggaatggc ctggccagcg gactggccgc
      601 gagcagtgag ggtgatgtcg agcagcgcgg cggccttctt ggcgtcctcg tagaacagct
      661 cgtagaagtc gcccatgcgg tagaacatca gcatgtccgg gtgctggttc ttcagcttcc
      721 agtactgctg catcatcggg gtgtgggctg acaaatcgct catgctgttc ggtccggctg
      781 aaatcgcaaa agcgcgtagt gtagggtatc ccccgcatct gtttcatccg gagagcacat
      841 ggattccagg attaccctac aggccgaagc gctcggtagt cggctcaagg cgctcggcgc
      901 ccaagtcact accgccgagt cctgtaccgg tggcggtatc gccgaggcgg tcacccgtat
      961 cgccggcagc tcggcctggt tcgaggccgg cttcatcacc tattcgaata cgcagaagac
     1021 cgctcagttg gacgtgccgg cggagctgtt cgcgcgtgtt ggcgcggtca gtcgtgaagt
     1081 ggtcgaggcc atggtcagcg gcgcgcagca acgcagcggt gcgcgctttg cggtagcggt
     1141 cagcggcatt gctggtcccg cgggtggctc tgcggagaag cctgttggca ccgtctggct
     1201 ggcctggggc gacggtacaa agctgtttac cgagcgctgc ttgtttgtcg gtgatcgtga
     1261 cgaggtgcgc cggcaaacgg tggcccgtgc tctggatggg ttactccgac tgacggcggg
     1321 agaaaatcct gcgcaggggt aggcgagcga cttgccttat ggaatactac tgtctactta
     1381 tacagttgtt ggcgagcgaa cggctccctt tgatcacgtg aggatggaaa tggacgagaa
     1441 caagaagcgc gcgttggcgg cagccctggg tcagatcgag aagcagttcg gcaagggtgc
     1501 cgtgatgcgc atgggcgacc acgagcgcca ggcgattccg gccatttcca ccggctccct
     1561 cggcctggac atcgcgctcg gcatcggcgg cctgccgaag ggccgtatcg tcgagatcta
     1621 cggtccggaa tcctcgggta agaccaccct gaccctgtcg gtcatcgcag aggcccagaa
     1681 ggccggtgcc acctgcgctt tcgtcgacgc cgaacacgcg ctggacccgg actacgccgg
     1741 caagctgggc gtcaatgtcg acgacctgct ggtttcccag ccggataccg gcgagcaagc
     1801 cctggaaatc accgacatgc tggtgcgctc caatgcagtt gacgtgatca tcgtcgactc
     1861 cgtggccgcc ctggtgccca aggccgagat cgaaggcgaa atgggcgacg cccacgtcgg
     1921 cctgcaggcc cgcctgatga gccaggcgct gcgcaagatc accggcaaca tcaagaatgc
     1981 caactgcctg gtcatcttca tcaaccagat ccgtatgaag atcggcgtga tgttcggcaa
     2041 cccggaaacc accaccggcg gtaacgccct caagttctac gcctccgtgc gcctggacat
     2101 ccgccgtacc ggcgcggtga aggaaggcga cgaggtggtc ggt
//
LOCUS       DATIHC010000338         1866 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12512, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000338 DATIHC010000000
VERSION     DATIHC010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1866)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1866)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1866
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12512"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..476)
                     /locus_tag="VLF16_05445"
     CDS             complement(<1..476)
                     /locus_tag="VLF16_05445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70361.1"
                     /translation="MSIKSKLLASFLIATLVPVLIVALLTIRNVTEQAETHFRDSSSL
                     DVRLVDNTFVTFFDAVGHTVSAMAEFPAVRDTGGGELSTYFGDKQKPSEVATAKGGRE
                     KQIFDYFSGIGNNNPTLGYVYMSDAAGGYIEWPGTGEYGEWDPRQRPWYGMGRDAN"
     gene            834..1532
                     /locus_tag="VLF16_05450"
     CDS             834..1532
                     /locus_tag="VLF16_05450"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011335118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSX70362.1"
                     /translation="MNSDEIKALFDQQAASYDERWAKTAPIREALHFLLEAVFAGLPD
                     NARLLCIGAGTGEEISYLARRFPGWHFTAVEPSGAMLDVCRRKAREEGFEARCQFHEG
                     YLQSLPEQAPFDAATAFLVSQFIVAREERIGFFRDIAARLRPGAILASSDLASDVSSR
                     EYTALLDTWMNMMLAADIPAAGVEQMRAAYARDVAVLPPDQVETIIAAGGFDLPVRFY
                     QAGLIHAWFSKRAG"
     gene            complement(1536..>1866)
                     /locus_tag="VLF16_05455"
     CDS             complement(1536..>1866)
                     /locus_tag="VLF16_05455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HSX70363.1"
                     /translation="YRVGLCHCLDCRKHHGALFHASAIFPEDAVTIEGETRDYAGRFF
                     CPRCGSSVFARTADEVEVYLGSLDEPGLFKPTYESWTVRREPWLPPFPLAHRYERDRD
                     SSGRFED"
BASE COUNT          304 a          618 c          638 g          306 t
ORIGIN      
        1 aaattggcgt cacgccccat gccgtaccag gggcgctggc gcgggtccca ctcgccgtac
       61 tcgccggtgc ccggccactc gatgtagccg cccgcggcat cgctcatgta gacgtagccc
      121 agggtggggt tgttgttacc gatgccggag aagtagtcga agatctgctt ctcgcgcccg
      181 cccttggcgg tggccacctc ggagggcttc tgcttgtcgc cgaaataggt gctcagctcg
      241 cctccgccgg tgtcgcgcac cgcgggaaac tcggccatgg ccgagacggt gtggccgacg
      301 gcgtcgaaga aggtgacgaa ggtgttgtcc accaggcgca cgtccaggct gctggagtcg
      361 cggaaatggg tctcggcctg ttcggtcacg ttgcgaatgg tcagcagcgc cacgatcagc
      421 acggggacca gggttgcgat cagaaaactc gccagcagtt tgctcttgat actcatgcag
      481 ggaaggcctt tggctaatga tcggtggggc ggacacggca tcgcttcgtc gccgcagagg
      541 cgcgatttca tactaggtaa cggcctgtgg tttgaatagt tgagcaccct cccgaagcag
      601 cgggcgcagc aacacagacg cccgcgtagg gtgcgccatg cgcaccgagg caacggcgct
      661 aaagccgatg gtgcgcgcgg cgcaccctac cgattgcccg agcgcgaggc cgtatcgccc
      721 accgcctgga tggcccggcc aggccgaggg gcttgacagc tccggtaggc taaatgaaga
      781 agcgcgccga ccgcgcgccc tgcccgccca tcgcaccaca caaggaatgc accgtgaaca
      841 gtgacgaaat caaggctctc ttcgaccagc aggccgccag ctacgacgag cgctgggcga
      901 agacggcgcc catccgcgag gcgctgcatt ttctcctcga ggcggtattc gccggccttc
      961 ccgacaacgc ccggctcctc tgcatcggcg cgggcaccgg cgaggagatc agctatctcg
     1021 cccggcgttt ccccggctgg cacttcaccg ccgtcgagcc gtcgggcgcg atgctcgatg
     1081 tctgtcggcg caaggcccgg gaggaaggct tcgaggcgcg ctgccagttc catgagggct
     1141 acctgcagtc gctgccggag caggcgccct tcgatgcggc caccgccttt ctggtctcgc
     1201 agttcatcgt cgcgcgggag gagcgcatcg gtttcttccg cgacatcgcg gcgcggctgc
     1261 gccccggggc gatcctggcc agctcggacc tggcctcgga cgtgagttcg cgggagtaca
     1321 ccgcgctgct cgacacctgg atgaacatga tgctggccgc cgacattccc gccgccggcg
     1381 tggaacagat gcgcgcggcg tacgccaggg acgtcgcggt gctgccgccc gatcaggtgg
     1441 agacgatcat cgccgcgggc ggtttcgatc tgccggtgcg tttctaccag gccggcctga
     1501 tccacgcctg gttctccaag cgcgccggct gacgcttagt cctcgaaacg cccactggag
     1561 tcccggtccc gctcgtagcg atgggcgagc gggaacggcg gcagccaggg ctcgcggcgg
     1621 acggtccagc tctcgtaggt cggtttgaac aggccgggtt cgtccagcga gccgaggtac
     1681 acctcgacct cgtccgcggt gcgggcgaat accgacgagc cgcagcgcgg gcagaagaaa
     1741 cgcccggcgt agtcccgcgt ttcaccctcg atggtcaccg cgtcctcggg gaatatcgcc
     1801 gaggcgtgga acagcgcgcc gtggtgcttg cggcagtcga ggcagtggca gaggccgacc
     1861 cggtac
//
LOCUS       DATIHC010000339         3190 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_26199, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000339 DATIHC010000000
VERSION     DATIHC010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3190
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26199"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1668)
                     /locus_tag="VLF16_05460"
     CDS             complement(<1..1668)
                     /locus_tag="VLF16_05460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003256021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC domain/YcaO domain-containing protein"
                     /protein_id="HSX70364.1"
                     /translation="MEIKVNFLDNLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFL
                     ASSALCAAYFVKLYCQTRNIPTENIRLSQNNIVDPEDRYKQIFKIQVELPADISEKDR
                     VGILRSIDRCTVKKVVQTGPDFVIEEVDNLDADAQALLIPALTEGEGTRILGKDLPLE
                     QTIANMSAILAGLGMKIEIASWRNIVPNVWSLHVRDAQSPLCFTNGKGATKESALASA
                     LGEFIERLNCNFFYNDQFWGEEIANAPFVHYPNEQWFKPGPKDALPEEILDEYCLEIY
                     NPDGELRGSHLYDTNSGNKARGICSLPFMRQSDGEVVYFPSNLIENLYLSNGMSAGNT
                     LAEAQVQCLSEIFERAVKREILEDELALPDVPQEVLAKYPGIVAGIKGLEEQGFPVLV
                     KDASLGGEFPVMCVTLMNPRTGGVFASFGAHPSFEVALERSLTELLQGRSFEGLNDLP
                     QPTFESHALTEPNNFVEHFIDSSGVVSWRFFSAKADYEFVEWDFSGEGEDSNAQEAAT
                     LFGILEDLGKEVYMAVYDHLGANACRILVPGYSEIYPVEDLIWDNTNK"
     gene            1853..2014
                     /locus_tag="VLF16_05465"
     CDS             1853..2014
                     /locus_tag="VLF16_05465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013713585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70365.1"
                     /translation="MKEQRKYLALRAHIESLLQDGAQIVSRAPFTLRIQGHLFRVQHG
                     MLIGHSAAA"
     gene            complement(2020..2586)
                     /locus_tag="VLF16_05470"
     CDS             complement(2020..2586)
                     /locus_tag="VLF16_05470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010954148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HSX70366.1"
                     /translation="MRRALVRSHVVHFTAPINSHTCGQLIDKCSQAIQQGADELVIKI
                     ATMGGECSYGFSLYNFLISLPIPVKTHNLGTVESMGNIIFLAGEQRTACHYSKFLFHP
                     FHWTLNGAVDHARMSEYAMSLDYDLQLYAAIVEERTRGAAEPLDVLDCLTASPRILSA
                     EEALSSGVIHAVDCLGMPSEAVNWCVHS"
     gene            complement(2736..3029)
                     /locus_tag="VLF16_05475"
                     /pseudo
     CDS             complement(2736..3029)
                     /locus_tag="VLF16_05475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012075868.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="general stress protein"
     gene            complement(3078..3190)
                     /locus_tag="VLF16_05480"
                     /pseudo
     CDS             complement(3078..3190)
                     /locus_tag="VLF16_05480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012075868.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="KGG domain-containing protein"
BASE COUNT          538 a          995 c         1041 g          616 t
ORIGIN      
        1 cttgttggtg ttgtcccaga tcaggtcttc caccgggtag atctccgagt agcccggcac
       61 caggatgcgg caggcgttgg cgccgaggtg gtcgtacacg gccatgtaca cctccttgcc
      121 caggtcctcg aggatgccga acagggtcgc ggcctcctgg gcattcgagt cctcgccttc
      181 acccgagaag tcccactcga cgaattcgta gtcggccttg gcgctgaaga agcgccagga
      241 caccacgccg ctggagtcga tgaagtgctc gacgaagttg ttcggctcgg tcagcgcgtg
      301 gctctcgaag gtcggctgcg gcaggtcgtt gaggccctcg aagctgcggc cctggagcag
      361 ttcggtgagg ctgcgctcca gcgccacttc gaagctcggg tgcgcgccga aggaggcgaa
      421 cacgccgccg gtgcgcgggt tcatcagggt cacgcacatc accgggaatt cgccgcccag
      481 ggaggcgtcc ttgaccagca ccgggaagcc ctgctcctcc aggcccttga tgccggcgac
      541 gatgccgggg tacttggcca acacctcctg cggcacgtcc ggcagggcca gttcgtcttc
      601 gaggatctcg cgcttgaccg cacgctcgaa gatttccgac aggcactgca cctgcgcctc
      661 ggccagggtg ttgccggcgc tcatgccgtt ggagagatac aggttttcga tcaggttgga
      721 cgggaagtac accacctcgc cgtccgactg gcgcatgaag ggcagcgagc agatgccgcg
      781 cgccttgttg ccggagttgg tgtcgtacag gtgcgagccg cgcagctcgc cgtccgggtt
      841 gtagatctcc aggcagtact cgtcgaggat ctcttccggc agcgcatcct tcggccccgg
      901 cttgaaccac tgctcgttcg ggtaatgcac gaagggcgca ttggcgatct cctcgcccca
      961 gaactggtcg ttgtagaaga agttgcagtt cagccgctcg atgaactcgc ccagcgccga
     1021 ggccagcgcg ctctccttgg tcgcaccctt gccgttggtg aagcacagcg gcgactgcgc
     1081 gtcgcgcaca tgcagcgacc agacgttggg cacgatattg cgccaggagg cgatctcgat
     1141 cttcatgccc aggccggcga ggatggccga catgttggcg atggtctgct ccagcggcag
     1201 gtccttgccg aggatgcgcg tgccctcgcc ctcggtcagc gctgggatca gcagggcctg
     1261 ggcgtcggcg tcgaggttgt cgacttcctc gatgacgaag tcggggccgg tctgcaccac
     1321 cttcttcacg gtgcagcggt cgatggagcg caggatgccg acgcggtcct tctcggagat
     1381 gtccgccggc agctcgacct ggatcttgaa gatctgcttg taacggtctt ccgggtcgac
     1441 gatgttgttc tgcgataggc ggatattttc cgtcgggata ttgcgcgtct ggcagtacag
     1501 cttgacgaag taggccgcgc acagcgccga ggacgccagg aagtagtcga acggccccgg
     1561 cgcggagcca tcgcccttgt agcggatggg ctggtcggca atcaccgtga agtcatcgaa
     1621 cttggcttcg agacggagat tgtcgagaaa gttgaccttg atttccatgc gggattacca
     1681 gaatgcgtgc gaggcgaaat gccgcgcatt atccggcatt cggcgcgggc gtggtgcaca
     1741 ggcacatcgc catcacaaaa tgtgacgcac aacacagtta ttgcgcagcg gaaatgtcga
     1801 catcgtcaca aagcttggta ggctctcgac acctcaacac aggagctttc cgatgaagga
     1861 acaacggaaa tacctcgctc tgcgcgccca tatcgagagc ctgcttcagg atggagcaca
     1921 gatcgtcagc cgcgcgccct tcacgcttcg catccaggga catctgttcc gcgtgcagca
     1981 cggcatgctg atcggccact cggccgcggc ctgaaccctc taggaatgca cgcaccagtt
     2041 gacggcttcg gaaggcattc cgaggcagtc caccgcgtgg atcacgcctg agctcagcgc
     2101 ctcttccgca ctcagaatcc gcggcgatgc cgtcaggcaa tcgagcacgt ccaggggctc
     2161 ggcggcgccg cgggtgcgtt cctcgacgat ggcggcatac agctgcaggt cgtagtccag
     2221 gctcatcgca tattcggaca tgcgggcatg gtcgacggcg ccattgagcg tccagtgaaa
     2281 gggatggaac aggaacttgc tgtagtggca ggcggtgcgc tgctcgccgg ccaggaagat
     2341 gatgttgccc atggactcga ccgtgccgag gttgtgggtc ttgaccggga tcggcagcga
     2401 gatcaggaag ttgtacagcg agaatccgta gctgcattcc ccacccatgg tggcgatctt
     2461 gatgaccaac tcgtccgcac cctgctggat ggcctgggag catttgtcga tcagctgacc
     2521 gcaggtgtgg gagttgatcg gtgccgtgaa atgcacgaca tgacttctca cgagtgccct
     2581 cctcagcgat gcgtccgcgt gagtcgcgtt ccgaccgctc tgttaggcgc gcgctattcg
     2641 gcgcggtggt gggatgagcc atgaatgcgg ggaggccccg ccaggccggt gatccataga
     2701 aaagagcgga agccgcagct tccgctcgct ccacatcagt tgttgcggcc accgccgcta
     2761 ttctgaccac ccttgcggcc ggcctcggag gcacgctcgc ggtcatcggc gaagttgcca
     2821 ccgccggatt ggccaccctg acggccggag cgctcggagt cgctctggtt gccgccgctg
     2881 ctctgaccgc ccttgcggcc ggcctcggaa gcgcgttcgc ggtcgttggc gaagttgcca
     2941 ccgccggatt ggctaccctg acggccggag cgctcggagt cgctctggtt gccgccactg
     3001 ctctgaccac ccttgcggcc ggcctcggag gcacgttcgc ggtcgtcggc gaagttgcca
     3061 ccgccggact gtccgcccga gcgattgctg tcgttctggt tgccgccgct gttctggccg
     3121 ccttgtcggc cagcttcgga ggcgcgctgt tgatcgttct ggaaactacc accgctgttc
     3181 tggccaccct
//
LOCUS       DATIHC010000340         2027 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_3292, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000340 DATIHC010000000
VERSION     DATIHC010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2027
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3292"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..486
                     /locus_tag="VLF16_05485"
     CDS             <1..486
                     /locus_tag="VLF16_05485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003241433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HSX70367.1"
                     /translation="ALPCSMLDEVWIVLRPDDHSSELGVPEHVNIVQHADTALGMGHS
                     LAAGVRRLSLESSADCLALFLADMPQIRRATLATLLALASPTRIVVPTCAQRRGHPVL
                     FGRAFWTPLCELSGDQGARSVLARFPDAVELVETGDPGVLLDVDLPQDLQHLRGADSM
                     G"
     gene            552..695
                     /locus_tag="VLF16_05490"
     CDS             552..695
                     /locus_tag="VLF16_05490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70368.1"
                     /translation="MSRPTEPKDKTPQTHEPPAENEQPDEDIPGEQPRSRSNEGDPLN
                     APN"
     gene            797..2005
                     /locus_tag="VLF16_05495"
     CDS             797..2005
                     /locus_tag="VLF16_05495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007900967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="HSX70369.1"
                     /translation="MAITRILVSSMLLGGLPLTAQGFEFAGYARGGWGGSEGGGTQSC
                     FQLPGAPAKYRLGNECEQYAELEGSQALYEGVDGTRLKLDGMVSLYNAYGHAPTFTGE
                     HGDARLPQLWMSLSLPALQGGSLWAGRRYYKRHDIHINDFYYWNPSGTGFGLEDYRLG
                     GYTLSYAFSREDNIHQPDKANRHDFNVGNIVTNPGGALEFGLGYIQRGQVENAHSGWS
                     LSVEHKQKDFLGGENRLVAQYGVGPGIGLGGTGDLRADRDVRSWRLLESPRWQLTPRF
                     GGMLLVALQRDERANGGDQTWYSAGVRMSYAFSQHFKLVGEIGHDRVETEADGTRRLS
                     KFTIAPTLSVGPGFMKRPEVRLYYTYARWNRAAQRAAPAGSALSASGAFDDALHGSNI
                     GVQVETWWGG"
BASE COUNT          326 a          754 c          675 g          272 t
ORIGIN      
        1 gcgctgccct gttcgatgct cgacgaggtg tggatcgtcc ttcgccccga cgaccactcc
       61 tcggagctgg gcgtgccgga gcacgtcaat atcgtgcagc acgccgacac cgcgctgggc
      121 atgggccaca gcctcgccgc cggcgtgcgc cggttgagcc tcgagtccag cgcggactgc
      181 ctggcgctgt tcctcgccga catgccgcag atcaggcgcg ccaccctggc cacgctgctc
      241 gcgctcgcct cgccgacgcg catcgtcgtg ccgacctgcg cacagcgccg cggccacccg
      301 gtgctgttcg ggcgcgcatt ctggacgccg ctgtgcgagc tgtccggcga ccagggcgcc
      361 aggagcgtgc tggcgcgctt ccccgacgcc gtggagctgg tcgaaaccgg cgatcccggc
      421 gtgctgctcg atgtcgatct gccgcaggat ctgcagcacc ttcgcggcgc cgattcgatg
      481 ggttgaacgg ccggcacggc ccgcccctcc aaagcaggga ccgcccggtc ccgccaccag
      541 ggagcacgca catgagcaga cccaccgaac cgaaggacaa gaccccacag acccacgagc
      601 cgccggccga aaacgagcag ccggacgagg acattcccgg cgagcagccg cgcagtcgct
      661 cgaacgaagg cgacccgctg aacgcgccca actgagcctt ttcgccgccg ccgcgagcga
      721 cgcgccggcg gcacaacccc accgcgcccg gagccggcgc gcaggcggca gcgccgtcgc
      781 aacaaggctg gagcctatgg cgatcacccg aatcctcgtg tcttccatgc tgctgggcgg
      841 gctgccgctg acggcccagg gcttcgaatt cgccggttac gcccgcggcg gctggggtgg
      901 ctcggaaggc ggcggcacgc aatcctgctt ccagctgccc ggtgcgccgg cgaagtaccg
      961 cctgggcaac gaatgcgagc agtacgccga gctggaaggc agccaggcgc tgtacgaagg
     1021 cgtcgacggc acgcgcctca agctcgacgg catggtctcg ctgtacaacg cctacgggca
     1081 tgcgccgacc ttcaccggcg aacacggcga cgcacgcctg ccgcagctgt ggatgagcct
     1141 ctcgctgccc gcgctgcagg gcggctcgct atgggccggg cggcgctact acaagcgcca
     1201 cgacatccac atcaacgact tctactactg gaacccgagc ggcaccggct tcggcctcga
     1261 ggactaccgc ctgggcgggt acaccctgag ctacgcgttc tcccgcgagg acaacatcca
     1321 ccagccggac aaggccaatc gccacgactt caacgtcggc aacatcgtca ccaaccccgg
     1381 tggcgcgctg gaattcggcc tcggctacat ccagcgcggc caggtggaga acgcccacag
     1441 cggctggtcg ctgtccgtgg agcacaagca gaaggacttt ctcggcggcg agaaccgcct
     1501 ggtcgcccag tacggcgtcg gcccgggcat cggcctcggc ggcaccggcg atctgcgcgc
     1561 cgaccgcgac gtgcgcagct ggcgtctgct ggagtcgccg cgctggcagc tcaccccgcg
     1621 cttcggcggc atgctgctgg tggccctgca gcgcgacgaa cgcgcgaacg gcggcgacca
     1681 gacctggtat tcggccggcg tgcggatgag ctacgccttc agccagcact tcaagctagt
     1741 cggcgagatc ggccacgacc gcgtcgagac cgaagcggac ggcacgcgca ggctgagcaa
     1801 gttcaccatc gccccgaccc tctcggtggg cccgggcttc atgaagcgcc ccgaggttcg
     1861 cctgtactac acctatgccc gctggaaccg cgccgcccag cgcgcggcac cggccggcag
     1921 cgcgctgtcc gccagcggcg cgttcgacga tgcgctgcac ggctctaaca tcggcgtgca
     1981 ggtcgagacc tggtggggcg gctgaggccg tcttccagcg tcccgcc
//
LOCUS       DATIHC010000341         1898 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33648, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000341 DATIHC010000000
VERSION     DATIHC010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1898)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1898)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1898
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33648"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..416)
                     /locus_tag="VLF16_05500"
     CDS             complement(<1..416)
                     /locus_tag="VLF16_05500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015475366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium chelatase"
                     /protein_id="HSX70370.1"
                     /translation="MAKKALSIRPRQAPGADALPLPGQAQGGRSGARGTGTPTRIDWP
                     ATLAHGRPRRHADLHWHARRLRPGELWLVIVDASASTRRHGALAQAKGLLAELFANAY
                     RQRARLAVLEAGGAQPRWLWQGQKASPELHAWLHQLG"
     gene            complement(398..1396)
                     /locus_tag="VLF16_05505"
     CDS             complement(398..1396)
                     /locus_tag="VLF16_05505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009617211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSX70371.1"
                     /translation="MQPHFPLAAVVAADELKLALCLAAIDPALGGVLIEGPRGMAKST
                     LARGVADLLDGGRFVTLPLGASEERIVGTLDLDAALGEGRVRFSSGVLANAHGGVLYV
                     DEVNLLPDHLVDLLLDVAASGINHIERDGLSHSHPARFVLIGTMNPEEGELRPQLLDR
                     FGLKVQLGGTPEPAQRAEIIRRRLAFDDAPETFLAQWQSEQEALRQRCSEARQRLSEI
                     PLDDASLDAIAQRCFAAAVDGLRADLVWLRGARAHAAWRGASQIEAQDIDALEPFVLA
                     HRRREHTPQAASQPPAPNPAQQPAEQQQGEGQWGALPPQAVAVGERREPPSWPKKP"
BASE COUNT          267 a          614 c          710 g          307 t
ORIGIN      
        1 ccgagctggt gcagccaggc gtgcagttca ggcgatgcct tctgcccctg ccagagccag
       61 cgtggctggg cgccgccggc ttcgagcacg gccaggcgcg cgcgctggcg gtaggcgttg
      121 gcgaacagct cggcgagcag gcccttggcc tgggccaggg cgccatggcg acgggtgctg
      181 gccgaggcat cgactatcac cagccacagt tcgccggggc gcaggcggcg ggcatgccag
      241 tgcaggtcgg catgacggcg cgggcggccg tgggcgaggg ttgccggcca gtcgatgcgc
      301 gtgggcgtgc cggtgccgcg agcgccgctg cgtccgcctt gggcctggcc ggggagaggt
      361 agggcatccg cgcctggggc ctggcgcggg cggatgctca gggctttttt ggccaggagg
      421 gcggctcgcg tcgttcgcct acggccacgg cctgtggtgg cagcgcgccc cactggcctt
      481 cgccctgctg ctgttctgcg ggttgctgag ccgggttcgg cgcaggtggc tggcttgcgg
      541 cctgtggcgt gtgttcgcgg cggcgatggg cgaggacgaa gggctccagg gcgtcgatat
      601 cctgcgcctc gatctggctg gcgccgcgcc aggcagcatg ggcgcgagcg ccgcgcagcc
      661 acaccagatc ggcgcgcagg ccgtcgacgg cggcggcgaa gcagcgctgg gcgatggcgt
      721 cgaggctggc gtcgtccagc gggatctcgc tcaggcgttg gcgagcctcg ctgcagcgtt
      781 ggcgcagggc ttcctgttcg ctctgccact gggcgaggaa ggtttcgggt gcgtcgtcga
      841 aggccaggcg gcggcggatg atctcggcgc gctgtgccgg ctcgggcgtg ccgccgagct
      901 gcaccttgag gccgaagcgg tcgagcagtt gcgggcgcag ctcgccttcc tcgggattca
      961 tggtgccgat cagcacgaag cgcgccggat ggctgtgcga caggccatcg cgctcgatgt
     1021 ggttgatgcc gctggcggcg acgtcgagca gcaggtccac caggtggtcg ggcagtaggt
     1081 tgacctcgtc aacgtagagc acgccgccgt gggcattggc cagcacgccg gaggagaagc
     1141 gcacgcggcc ctcgccgagt gcggcatcca ggtcgagggt gccgacgatg cgttcctcgc
     1201 tggcgcccag tggcagggtg acgaagcgcc cgccgtcgag caggtcggcc acgccgcgcg
     1261 ccagggtgga cttggccatg ccgcgcggac cttcgatcag cacgccaccc agggccgggt
     1321 cgatggcggc caggcacagc gccagcttga gctcgtcggc ggccaccacg gcggccaggg
     1381 ggaaatgggg ctgcatggcg ttacctcaga gcaagggttg aagtcgaatg gggcgatcgg
     1441 ttagcgtggc aaccatcgtt ttggagatca gcatgtcgtc tcgtccttcc ctgaaccgcc
     1501 tcgttcgctc cgccgctgtc ggcgtggcag gcgtgcgcgc gcaggtcgag gccgtcgctt
     1561 atttctttta tgggtattgg tttagccagc ggcgcgcctg ataccccaca ggcgccccag
     1621 agcaaagggt cgccaccagc cagtttcacg aaaccccggt cggccacccg accggggttt
     1681 ttgttttttc ggcccacaag gccaacacga tgcacacaga ggatcgaaac atgaccgctt
     1741 accgcactta ttaccgcagc taccgcacct ccgcctggcg atttagcagc gctgccgcgc
     1801 accaccgaga ttccagtcga acacccagat agcgcgccgc gcgtggcatg agaccacgcc
     1861 gggcgaggac caccgccatg aatgcttccg ttaccgct
//
LOCUS       DATIHC010000342         3508 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5759, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000342 DATIHC010000000
VERSION     DATIHC010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3508
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5759"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1344)
                     /locus_tag="VLF16_05510"
     CDS             complement(<1..1344)
                     /locus_tag="VLF16_05510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSX70372.1"
                     /translation="MTLSDICIRRPVFATVLSLIIVLLGLLAYQRLAVREYPNIDVPI
                     VTVNITYPGASPEIMESQVAQPIEDVLSGIEGLDFVSSISRSENTQITAQFRLGSNSD
                     EAANDVRDRLGRVRSLLPEEIDEPMVQKVEADAQPVVWLAFYSERFSAMEITDVIERV
                     VQDRLQIIPGVSEVQVRGARSFAMRIWLDPEKLAAHDLTVQDVEDALRRQNVEIPAGR
                     IESVQREFSVLSETDLKTPDQFNQLILDDSRGYLLRLSDVGHAEIGAADERTVVRFKG
                     RPAVAVGMVKQATANPLEISDGLEAALPEIRALLPEGMEMQVANDNSLFIRESISNVY
                     TTIWEAVVLVVLIIFLFLRSLRATLIPLVTIPVSLIGACALMALMGFTVNTLTLLAMV
                     LAIGLVVDDAIVVLENIHRHIEQGMKPLQAAFVGSREIAFAVIAMTLTLAAVYAPI"
     gene            complement(1341..2363)
                     /locus_tag="VLF16_05515"
     CDS             complement(1341..2363)
                     /locus_tag="VLF16_05515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSX70373.1"
                     /translation="MIVRRMLWPLLLGLLSAAPAVAEQAPRVEVVTPERTQVRDELIT
                     FGSLRSDESTMIRPEVDGRIATLHFREGQAVEAGALLVGLDDAIARAELAQATANLGL
                     AEKNYQRAQMLFKRGASNAQALDEASSQQQAARASLALAQARLDKTQIRAPYDGVLGL
                     RLVSVGDYLGAGDDIVNLEVLDPLKVDFRVPQKAVSQVRLDQAIELSLDAYPGERFRG
                     RIMALNPRLDEVGRSQAIRARVGNADHRLKPGQFVRVSVILAERPQALVIPEEAVMPM
                     GQLLFVNLVVDGKVERRQIRIGQRLRGRAEVVEGLQGDETVISAGWQKVGPGREVRTV
                     PRGEGA"
     gene            complement(2475..3254)
                     /locus_tag="VLF16_05520"
     CDS             complement(2475..3254)
                     /locus_tag="VLF16_05520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSX70374.1"
                     /translation="MSPELASNWVALQTIVRREVRRFMRIWPQTLVPPAITMALYFVI
                     FGRLIGSQVGGVGQFSYMEFIVPGLIMMSVITNSYSNVVSSFFSSKFQRNVEELLVSP
                     VSPHTILIGYTIGGALRGLAVAFIVTLLSLFFTHLQVHHLGVTVLVILLTAITFSLGG
                     FINAVYARNFDDISIVPTFVLTPLTYLGGVFYSISLLPEFWQHVSLVNPILHMVNAFR
                     YGILGVSDINIGIAIGMMLLASTVLYIVCIRLLKSGRGMRQ"
     gene            complement(3251..>3508)
                     /locus_tag="VLF16_05525"
     CDS             complement(3251..>3508)
                     /locus_tag="VLF16_05525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015649083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSX70375.1"
                     /translation="TLHVETFLLDLKESTLVMPQLSGYPARMVDDHTLEVQVEKSQGV
                     NELFRQLAAQKVEVLSLRNKSNRLEELFVSLVEKNLKKVAQ"
BASE COUNT          613 a         1139 c         1187 g          569 t
ORIGIN      
        1 gatcggcgcg tacacggcgg ccagggtcag ggtcatggcg atcaccgcga aggcgatctc
       61 gcggctgccg acgaaggccg cctgcaacgg cttcatgccc tgctcgatat gccggtggat
      121 gttctccagc accacgatcg catcgtccac caccagaccg atggccagga ccatggccag
      181 cagggtcagg gtgttgaccg tgaagcccat cagcgccatc agcgcgcagg cgccgatcag
      241 cgacaccggg atggtcacca gcggaatcag cgtggcgcgc agcgaacgca gaaacaggaa
      301 gatgatcagc accaccagca ccacggcctc ccagatggtg gtgtagacgt tgctgatcga
      361 ctcgcggatg aacagcgagt tgtcgttggc cacctgcatc tccatgcctt cgggcagcag
      421 cgcacgaatc tccggcagcg ctgcttcgag tccgtcggag atttccagcg ggttggccgt
      481 ggcctgcttg accatgccca ccgccaccgc cgggcgaccc ttgaaacgca ccacggtgcg
      541 ctcgtcggcg gcgccgatct cggcatggcc gacatcagac aggcgcagca ggtagccgcg
      601 cgagtcgtcg agaatcagtt ggttgaattg gtccggggtc ttcaggtcgg tctccgacag
      661 cacggaaaac tcgcgctgta ccgactcgat gcgcccggcg ggaatctcca cgttctgccg
      721 gcgcagcgcg tcctccacgt cctgcacggt gaggtcgtgg gcggccagct tctccgggtc
      781 gagccagatg cgcatggcga agctgcgcgc accgcggacc tgcacctcgg acacgccggg
      841 aatgatctgc aggcggtcct gcaccacccg ctcgatcacg tcggtgatct ccatggcgga
      901 gaagcgctcg ctgtagaagg ccagccagac caccggctgg gcgtcggcct cgaccttctg
      961 caccatcggc tcgtcgattt cttccggcaa caggctgcgt acccggccca ggcggtcgcg
     1021 cacgtcgttg gccgcctcgt cggagttgct gccgaggcgg aactgggcag tgatctgggt
     1081 gttttccgag cggctgatgg agctgacgaa gtccagtccc tcgatgcccg agagcacgtc
     1141 ctcgatcggc tgggcgacct gggactccat gatctccggg ctggcgccgg gataggtgat
     1201 gttgaccgtg acgatgggca cgtcgatgtt cgggtattcg cgcaccgcca ggcgctgata
     1261 ggccagcaac ccgagcagca cgatgatcag cgacagcacg gtggcaaaca ccggccggcg
     1321 gatgcagatg tccgacaggg tcatgcgcct tcaccgcgcg ggacggtgcg cacctcgcgg
     1381 cccgggccga ccttctgcca gccggcgctg atcaccgtct cgtcgccctg cagcccttcc
     1441 accacttccg cgcggccacg caggcgctgg ccgatacgga tctgccgacg ctcgaccttg
     1501 ccgtccacca ccaggttgac gaacagcagc tgccccatcg gcatcaccgc ctcctcggga
     1561 atcaccagcg cctgcgggcg ctcggcgagg atcaccgaaa cccggacgaa ctggccgggc
     1621 ttgagccggt ggtcggcgtt gcccacccgg gcgcggatcg cctggctgcg accgacctcg
     1681 tccaggcgcg ggttgagcgc catgatccgg ccgcggaagc gctcgccggg ataggcgtcc
     1741 aggctgagtt cgatggcctg gtccagacgc acctggctga ccgccttctg cggcacccgg
     1801 aagtccacct tgagagggtc gagcacctcg agattgacga tgtcgtcgcc ggcgccgagg
     1861 tagtcgccga cgctgaccag gcgcaggccg agcacgccgt cgtagggtgc gcggatctgc
     1921 gtcttgtcca ggcgcgcctg ggccagggcc aggctggcgc gggcggcctg ctgctgggag
     1981 ctggcctcat cgagggcctg ggcgttgctg gcaccgcgct tgaacagcat ctgcgcgcgc
     2041 tggtagttct tctcggccag ccccaggttg gccgtggcct gggccagctc ggcgcgggcg
     2101 atggcatcgt ccagaccgac cagcagggcg ccagcctcga ccgcctgccc ctcgcggaaa
     2161 tgcagggtgg cgatgcggcc gtccacttcg gggcggatca tggtggactc gtccgagcgc
     2221 agcgagccga aggtgatcag ctcatcacgc acctgggtgc gttcgggggt gacgacttcc
     2281 acccgcggcg cctgctcggc cacggctgga gcggcgctca acaggccgag cagcagcggc
     2341 cacagcatgc gacggacaat catccacttg cctcttggaa tgggagggaa cggcgaaccc
     2401 agcgattctg ccgtcgtggg attgtcagcg acaggtgagg atggcgccag cctgtgacgc
     2461 catgtttccc gcggttactg gcgcatgccg cggccgctct tcagcaggcg gatgcagacg
     2521 atgtagagca ccgtgctggc cagcagcatc atgccgatgg cgatgccgat attgatgtcg
     2581 gacacgccga ggatgccgta gcggaaggcg ttgaccatgt gcaggatggg gttgaccagc
     2641 gacacgtgct gccagaactc gggcaacagg ctgatcgagt agaacacccc gcccaggtag
     2701 gtcagcggcg tgagcacgaa ggtcggaacg atggagatgt cgtcgaagtt gcgcgcatac
     2761 accgcgttga tgaagccgcc cagggagaag gtgatcgcgg tgagcaggat caccagcacc
     2821 gtcacgccca ggtggtgtac ctgcaggtgg gtgaagaaca gcgacagcag cgtgacgatg
     2881 aaggccaccg ccaggccgcg cagtgcgccg ccgatggtgt agccgatgag gatggtgtgc
     2941 ggcgacaccg gcgacaccag cagctcctcg acattgcgct ggaacttgct ggaaaagaag
     3001 ctcgatacca cgttgctgta ggagttggtg atcaccgaca tcatgatcag ccccggcacg
     3061 atgaactcca tgtagctgaa ctgcccgacg ccgccgacct ggctgccgat caggcggccg
     3121 aagatcacga agtacagggc catggtgatg gccggcggca ccagggtctg cggccagatg
     3181 cgcatgaagc gccgcacttc gcggcgcacg atggtctgca gggcaaccca gttggaggcg
     3241 agttcggggc tcattgcgcc accttcttca ggttcttctc gaccagggac acgaacagct
     3301 cctcgagacg gttgctcttg ttgcgcaggc tcagcacctc gaccttctgc gccgccagct
     3361 ggcggaacag ctcgttgacg ccctggctct tctccacctg cacctccagg gtgtggtcgt
     3421 cgaccatgcg cgccgggtaa cccgagagct gcggcatgac cagggtcgat tccttgaggt
     3481 cgagcaggaa ggtctccacg tgcagggt
//
LOCUS       DATIHC010000343         3980 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5765, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000343 DATIHC010000000
VERSION     DATIHC010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3980)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3980)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3980
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5765"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..708)
                     /locus_tag="VLF16_05530"
     CDS             complement(<1..708)
                     /locus_tag="VLF16_05530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010568042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlxA family transcriptional regulator"
                     /protein_id="HSX70376.1"
                     /translation="MSPTRIALLATDGVFAATLMQARDFFHMAGLRHGKQQGLGTASA
                     FQIRVVSPDGQAVTSFSEAVIPVDDRLGEAEVIILPAFWGDFDVLCQRCPEVLPWLRE
                     RHAAGSAICGEATGVFWMAQAGLLDGKEATTYWRFFREFAERFPQVLLNQDKHLSDAD
                     NLYCAGGVTSACDLYIYLIERYCGAGIAQGVARDILYETQRSYSPGRIGFGGQKLHQD
                     VAILQVQQWLEEHFAEKF"
     gene            847..1983
                     /locus_tag="VLF16_05535"
     CDS             847..1983
                     /locus_tag="VLF16_05535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003205367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HSX70377.1"
                     /translation="MIPRTLFSSEHELFRESVRKFFEQEAVPFHAQWEKDGHIDRALW
                     NKAGEAGMLCSHLPEEYGGMGADFLYSAVVIEEQSRLGLSGVGFSLHSDIVAPYILHY
                     GSEEQKLHYLPRLVSGEMVTAIAMTEPGTGSDLQGVKTTAVLDGDEYVINGSKTFITN
                     GWLADLVIVVAKTDPKAGAKGISLFLVEADTPGFSKGKRLEKVGMKAQDTSELFFQDV
                     RIPKANLLGKEGLGFVYLMQELPQERLTVGVGAIASAEAALQWTLDYTRDRKAFGRPV
                     ADFQNTRFKLAEMATEIQVGRVFVDRCLELHLNKKLDVPTAAMLKYWGTDLQCKVIDE
                     CVQLHGGYGYMWEYPIARAWADSRVQRIYAGTNEIMKEIISRAL"
     gene            2072..2776
                     /gene="nfi"
                     /locus_tag="VLF16_05540"
     CDS             2072..2776
                     /gene="nfi"
                     /locus_tag="VLF16_05540"
                     /EC_number="3.1.21.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013789887.1"
                     /note="cleaves DNA at apurinic or apyrimidinic sites;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease V"
                     /protein_id="HSX70378.1"
                     /translation="MSTSPFTDWDGTAQQARVLQSTLAERVVLRDDFVTPRLIAGVDV
                     GFEEQGTITLAAAVLLDANSLQPVAHSVARIPTSMPYVPGLLSFRELPAVLQALRELP
                     HAPDLIYCDGLGIAHPRRLGIAAHLGVVTGLPTIGVAKKILVGKHEELAPTKGVRVPL
                     VHAGEQVGWMLRSKDRVKPLVVSPGHRVSLASAVELVLACCRGYRLPEPTRLADRLAS
                     RRGEMPALMSTPDLFG"
     gene            complement(2780..3817)
                     /locus_tag="VLF16_05545"
     CDS             complement(2780..3817)
                     /locus_tag="VLF16_05545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047834 - D-threo-aldose 1-dehydrogenase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(H)-dependent aldo-keto reductase"
                     /protein_id="HSX70379.1"
                     /translation="MEYRQLGRSDISVSALCLGSMTWGEQNSEAEGFAQIDRARAAGI
                     NFLDTAEMYPVPPRAETYGATERIVGNYFKSRGNRADWILASKVAGPGNGISHIRDGQ
                     LKHNRQHIVAALDESLKRLQTDWIDLYQLHWPERSTNFFGQLGYRHQEQDFTPLQETL
                     EALAEQVKAGKIRHIGLSNETAWGTMKFLQLADSLGLPRAVSIQNPYNLLNRSFEVGL
                     AEVAMREQCGLLAYSPLAFGMLSGKYENGARPANARITLFSRFSRYTNPQSLAACDRY
                     VRLAHEHGLNPAQMALAFVTRQPFVTSNIIGATSLEQLDSNLASLELEMSEELLAAIE
                     AIHREQPNPAP"
BASE COUNT          629 a         1273 c         1380 g          698 t
ORIGIN      
        1 gaatttctcg gcgaagtgct cctccagcca ctgctgtacc tgcaggatgg ccacgtcctg
       61 gtgcagcttc tggccgccga aaccgatgcg gcccgggctg tagctgcgct gggtctcgta
      121 gaggatgtcg cgggccacgc cctgggcgat gccggcgccg cagtagcgct cgatcagata
      181 gatgtagagg tcgcaggccg aggtgacgcc gccggcgcag tacaggttgt cggcatccga
      241 caggtgcttg tcctggttca gcaggacctg gggaaagcgc tcggcgaatt cgcggaaaaa
      301 gcgccagtag gtggtcgcct ccttgccgtc gagcaggccg gcctgcgcca tccagaacac
      361 cccggtggcc tcgccacaga tggcgctgcc ggcggcatgc cgctcgcgca gccagggcag
      421 cacttccggg cagcgctggc agagtacgtc gaagtcgccc cagaaggccg gcaggatgat
      481 cacctcggcc tcgcccaggc ggtcgtccac cgggatcacc gcctcgctga agctggtcac
      541 cgcctggcca tccgggctga ccacgcggat ctggaaggcc gaagccgtgc ccagtccctg
      601 ttgcttgccg tggcgcagcc cggccatgtg gaagaagtcc cgggcctgca tcagggtagc
      661 ggcgaagacg ccatcggtgg cgagcagggc gatgcgtgtg ggcgacatgt ctattgttct
      721 tatgtggtta aacggtcatc ggctggctgg atcgtcttat tttttgtcgc aagtgtccag
      781 tgtcgatggc gtgggcgctg acctagagtg gggccaccca acgatcactc agaagcaggt
      841 gtaacaatga ttccaagaac cctgttcagc tccgagcacg agctgttccg cgagtccgtg
      901 cgcaagttct tcgagcagga ggcggtgccc ttccatgctc agtgggagaa ggacggccac
      961 atcgaccgcg ccctgtggaa caaggccggc gaggccggca tgctctgctc gcacctgccc
     1021 gaggagtacg gcggcatggg cgccgacttc ctctacagcg ccgtggtcat cgaggagcag
     1081 tcgcgcctgg gcctgtccgg cgtcggcttc tcgctgcact cggacatcgt cgcgccctac
     1141 atcctccact acggctcgga ggagcagaag ctgcactacc tgcccaggct ggtgagcggc
     1201 gagatggtca ccgccatcgc catgaccgaa ccgggcaccg gctccgacct gcagggcgtg
     1261 aagaccaccg ccgtgctgga tggcgacgag tacgtgatca acggctcgaa gaccttcatc
     1321 accaacggct ggctggccga cctggtgatc gtcgtggcca agaccgaccc gaaggccggc
     1381 gccaagggca tcagcctgtt cctggtggag gccgacaccc cgggcttctc caagggcaag
     1441 cgtctggaga aggtcggcat gaaggctcag gacacttccg agctgttctt ccaggacgtg
     1501 cgcattccca aggccaacct gctcggcaag gaaggcctgg gcttcgtcta cctgatgcag
     1561 gagctgccac aggagcgcct gaccgtgggc gtcggcgcga tcgcttcggc cgaggcggcg
     1621 ctgcagtgga ccctggacta cacccgtgac cgcaaggcct tcggccgccc ggtggcggac
     1681 ttccagaaca cccgcttcaa gctggccgag atggccaccg agatccaggt cggtcgcgtc
     1741 ttcgtcgacc gctgcctgga gctgcacctg aacaagaagc tcgatgtgcc gaccgcggcg
     1801 atgctcaagt actggggcac cgacctgcag tgcaaggtga tcgacgagtg cgtgcagctg
     1861 cacggcggct acggctacat gtgggagtat ccgatcgccc gcgcctgggc cgactcgcgg
     1921 gtgcagcgca tctatgccgg caccaacgag atcatgaagg aaatcatctc gcgggcgttg
     1981 taagcccgcc cggctcgcct gcggtcgccg cgggcgaacc cgcctcctgc ttcgccggtc
     2041 taccggtcct gaatccgggc cggaggccac gatgtccact tcgcctttca ccgactggga
     2101 cggcaccgcg caacaggcgc gtgtgctgca gagcacgctg gccgagcgcg tggtgttgcg
     2161 cgatgacttc gtcacgccgc gcctgatcgc cggggtcgat gtcggtttcg aagagcaggg
     2221 caccatcacc ctggccgccg ccgtgctgct cgacgcgaac agcctgcagc ccgtcgccca
     2281 cagcgtggcg cgcatcccca ccagcatgcc gtatgtcccg ggactgctgt cctttcgtga
     2341 gctgccggcg gtgcttcagg cgctgcgtga gctgccgcac gcgcccgatc tgatctactg
     2401 cgacggcctg ggcatcgccc atccgcgtcg gctcggcatc gccgcgcacc tgggcgtggt
     2461 gaccggcctg ccgaccatcg gcgtggccaa gaagatcctc gtcggcaagc acgaggagct
     2521 ggcgccaacc aagggcgtgc gcgtgccgct ggtgcatgcc ggcgaacagg tcggctggat
     2581 gctgcgcagc aaggaccggg tcaagccgct ggtcgtctcg cccgggcacc gggtgagtct
     2641 ggccagcgcc gtcgagctgg tgctggcgtg ctgtcgcggt tatcgcctgc ccgaaccgac
     2701 ccggctggcg gatcggctgg cgtcgcggcg cggcgagatg ccggcgctca tgagcacgcc
     2761 ggatctgttc ggctgagcct cagggtgccg ggttgggctg ctcgcggtgg atggcttcga
     2821 tcgcggccag cagttcctcg ctcatctcca gctccaggct ggcgaggttg ctgtccagct
     2881 gctccaggct ggtggcgcca atgatgttgc tggtgacgaa gggctggcgg gtgacgaagg
     2941 ccagggccat ctgcgccggg ttcaggccgt gctcgtgcgc caggcgcacg tagcggtcgc
     3001 aggccgccag ggattgcggg ttggtgtagc gcgagaagcg gctgaacagg gtgatgcgtg
     3061 cgttggccgg gcgggcgccg ttctcgtatt tgccggagag cataccgaag gccagcggcg
     3121 agtacgccag caggccgcac tgttcgcgca tcgccacctc ggccaggccc acctcgaaac
     3181 tgcggttgag caggttatag gggttctgga tcgataccgc acgcggcagg cccaggctgt
     3241 cggccagctg caggaatttc atggtgcccc aggccgtctc gttggaaagg ccgatgtggc
     3301 ggatcttgcc agccttgacc tgctcggcga gtgcctcgag ggtctcctgc agcggggtga
     3361 agtcctgttc ctggtgacgg tagcccagct gaccgaagaa gttggtgctg cgctccggcc
     3421 agtgcagctg gtagaggtcg atccagtcgg tctgcaggcg cttcaggctc tcgtccagcg
     3481 ccgcgacgat gtgctggcgg ttgtgcttca gctggccatc gcggatatgg ctgatgccgt
     3541 tgccgggacc ggcgaccttg ctcgccagga tccagtcggc gcggttgccg cgggacttga
     3601 aatagttgcc gacgatgcgc tcggtggcgc cataggtctc ggcgcgcggc ggtaccgggt
     3661 acatttcggc agtgtcgagg aagttgatgc cggcggcgcg ggcgcggtcg atctgggcga
     3721 aaccctcggc ctcgctgttc tgctcgcccc aggtcatgct gcccaggcaa agggcgctga
     3781 cgctgatgtc gctgcgcccc agttgacggt attccatgat cgctcctcgt gctgactgag
     3841 cggggcatga taaagcaggt tgcgtttttc gccgcaatcg gcataattcc gcggctttct
     3901 cggcggggat gcctagcctg ccgggaaaga aggtggggat gcctagccca ccgaaacccc
     3961 cgccgtagcg gacgcgctga
//
LOCUS       DATIHC010000344         3068 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42959, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000344 DATIHC010000000
VERSION     DATIHC010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3068)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3068)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3068
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42959"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..286
                     /locus_tag="VLF16_05550"
     CDS             <1..286
                     /locus_tag="VLF16_05550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003455786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="polyamine ABC transporter substrate-binding
                     protein"
                     /protein_id="HSX70380.1"
                     /translation="FIDNLVIPASARRADLAHQFIDFLMQPQVAAQISSETLYPSANA
                     DAHEFLEPALRDQLGGDMNDAKSRLFSLLPLPEKLKTARDEVWARFREGS"
     gene            463..1104
                     /locus_tag="VLF16_05555"
     CDS             463..1104
                     /locus_tag="VLF16_05555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013713549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HSX70381.1"
                     /translation="MPRTAQPRKPRASSQARIELILEAARELLGTQGFAGLTIYAVAE
                     RAGIPPSSVYHFFASVPALLEALTADIHAAFRDCLLQPVDHAQLRDWRDLSRLIEQRM
                     LAIYADDTAARQLILAQHGLSEVTQADRQHDLELGRLMQQLFDRHFPLPQLPDDIDVF
                     ALAMELGDRVYARSVQLHGEITPRLADEGMRVFDAYLGLYLPPALPKRDEPLN"
     gene            1366..2247
                     /gene="aguB"
                     /locus_tag="VLF16_05560"
     CDS             1366..2247
                     /gene="aguB"
                     /locus_tag="VLF16_05560"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003291897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0050126 - N-carbamoylputrescine amidase
                     activity [Evidence IEA];
                     GO_process: GO:0009446 - putrescine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidase"
                     /protein_id="HSX70382.1"
                     /translation="MSRTVTVAATQMACSWESTANIATAEKLVRQAAAQGAQIILIQE
                     LFETPYFCQKPNPDYLQLATPAEENPAILHFQQVARELQVVLPISFFERAGRARFNSI
                     AIIDADGSLLGVYRKSHIPDGPGYHEKYYFNPGDSGFKVWNTRYAKIGVGICWDQWFP
                     EAARSMALMGAELLFYPTAIGSEPHDPSISSRDHWQRVQQGHAGANLMPLIASNRIGR
                     EEQDGYAITFYGSSFIADQFGEKVEELGETEEGVLVHSFDLDRLEQVRSAWGVFRDRR
                     PNLYWPLSTLDGDMPSQ"
     gene            2330..2722
                     /locus_tag="VLF16_05565"
                     /pseudo
     CDS             2330..2722
                     /locus_tag="VLF16_05565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248983.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004668 - protein-arginine deiminase
                     activity [Evidence IEA];
                     GO_process: GO:0009446 - putrescine biosynthetic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
     gene            complement(2713..3068)
                     /locus_tag="VLF16_05570"
                     /pseudo
     CDS             complement(2713..3068)
                     /locus_tag="VLF16_05570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248983.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004668 - protein-arginine deiminase
                     activity [Evidence IEA];
                     GO_process: GO:0009446 - putrescine biosynthetic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="agmatine deiminase family protein"
BASE COUNT          524 a         1101 c          938 g          505 t
ORIGIN      
        1 gttcatcgac aacctggtga tccccgccag cgcccgccgc gccgacctgg cgcaccagtt
       61 catcgacttc ctgatgcagc cgcaggtggc cgcgcagatc agcagcgaga cgctctatcc
      121 cagtgccaac gccgatgccc atgagttcct cgaacccgcg ctgcgcgacc agctcggcgg
      181 tgacatgaac gatgccaaga gccgcctgtt cagcctgctg ccgctgccgg agaagctgaa
      241 gaccgcgcgc gacgaggtct gggcgcgctt tcgcgaaggc agctgaagtc gcggccttgc
      301 ctaccccgcg cgtctggcgt ccaatagcgc ctgcccgaga gaccgccgcc tcctgatgac
      361 ccggccttcg ggctgcgcgg cacatggcac cctgcatcat tgagagcacc attgccggcg
      421 cagcaacgcg cccatgaagg aatagtcgtc agaggacacc gcatgccccg caccgcccag
      481 ccccgcaagc cccgcgccag cagccaggcg cgcatcgagc tgatcctcga ggcggcgcgg
      541 gaactgctcg gcacccaggg cttcgccggt ctcaccatct acgcggtggc cgagcgcgcg
      601 ggcattccgc cctcctccgt gtaccacttc tttgccagcg taccggcgct gctggaagcg
      661 ctgaccgccg acatccacgc ggcctttcgc gactgtctgc tgcagccggt agatcacgca
      721 cagctgcgcg actggcgaga cctgtcgcgc ctcatcgagc agcgcatgct ggcgatctat
      781 gccgacgaca ccgcggcgcg ccagctgatc ctggcgcagc acggtctgtc cgaggtgacc
      841 caggccgacc gccagcacga cctggagctg ggccgcctga tgcagcagct cttcgacaga
      901 cacttccccc tgccgcaact gccggacgac atcgacgtgt tcgccctggc catggaactg
      961 ggcgaccggg tctatgcgcg ctcggtgcag ctgcatggcg aaatcacgcc gcgcctggcc
     1021 gacgaaggca tgcgcgtatt cgatgcctac ctgggcctgt acctgccgcc ggcgctgccg
     1081 aagcgcgatg agccgctgaa ctaaacccga tatccatcgc ccttccctca ggcacgcggg
     1141 tcccctcgcg cgacccgtcg cgtgcgcctt cggcacgcgt tggtcgttgc atagccagtt
     1201 catcggatcg atatttatct gccaaagaat gaataaaacg catcgccaaa tgaattttcg
     1261 cttttaaagc cgatttttat cggatataaa tcgagcattc gccgtcacca cggcacagtc
     1321 gcgtcgcatg ccagacgcgc ccttccatgc tctgcgaggt gtttcatgtc gcgtaccgtt
     1381 accgtcgccg ccacccagat ggcctgttcc tgggaaagca ccgccaacat cgccacggcc
     1441 gagaaactcg tacgccaggc ggctgcccag ggggcccaga tcatcctgat ccaggagctg
     1501 ttcgagacgc cctacttctg ccagaagccc aacccggact acctgcaact ggccaccccg
     1561 gccgaggaga atccggcgat tctgcatttc cagcaggtcg cccgtgagct gcaggtggtg
     1621 ctgccgatca gcttcttcga gcgtgccggc cgcgcccgct tcaacagcat cgccatcatc
     1681 gacgccgacg gcagcctcct cggcgtgtac cgcaagagcc atatcccgga cggccccggt
     1741 tatcacgaga agtactactt caatccgggc gattccggct tcaaggtgtg gaacacccgc
     1801 tacgccaaga tcggcgtcgg catatgctgg gaccagtggt ttcccgaggc ggcgcgcagc
     1861 atggcgctga tgggcgccga gctgctgttc tacccgaccg ccatcggcag cgagccgcac
     1921 gacccgagca tcagctcgcg cgatcactgg cagcgcgtgc aacagggcca tgccggcgcc
     1981 aacctgatgc cgctgatcgc ctccaaccgc atcggccgcg aggaacagga cggctacgcc
     2041 atcaccttct acggctcgtc cttcatcgcc gatcagttcg gcgagaaggt cgaggaactg
     2101 ggtgaaaccg aagagggtgt gctggtgcac agcttcgacc tggaccgcct cgaacaggtg
     2161 cgcagcgcct ggggcgtgtt ccgcgaccgc cgcccgaacc tatactggcc gctctcgacc
     2221 ctcgacggcg acatgccctc gcagtgaacg tacgagtggg gtgcgccgcg cgcacctcgc
     2281 ctccagacac cttcgccggt gcgcatggcg caccctacgg agccacgcaa tgcctactct
     2341 gacctccacc ccacgcgccg acggcttccg catgcccgcc gagtgggaac cccacagcca
     2401 gacctggatg gtctggcccg agcgcccgga caactggcgc ctcggcggca agccggcgca
     2461 ggccgccttc accgccgtgg cccgcgccat cgccgagttc gagccggtca ccgtctgcgt
     2521 ctccgccggg cagtacgaga acgcccgcgc gcgcctcgac ggcagcggca tccgcctggt
     2581 ggaaatcagc accgacgacg cctgggtgcg cgacaccggc cccaccttcg tcaccaacga
     2641 tcagggtgac gtgcgcggcg tggactgggg cttcaacgcc tggggcggct tcgacggcgg
     2701 cctgtactgg ccctggcagc gcgggtagtt ggggtcgttg gcgtcatcgg tccaggccag
     2761 cagcacttcg cccgggcgca cgtagcagca gaagttgtcg acatggccgt cggtctcgtc
     2821 gttgaacagg ccgtccggca gccagatcac cgtgtcgatg gccaggtgat cgtgcagcac
     2881 cgcctcgatc tcttcgcggg acaggtgcgg attgcggttc ctgttgagca ggcattcctc
     2941 ggtggtgatc agggtgcctt caccgtcgac gtggatcgaa ccgccctcca gcacgaagcc
     3001 ctcggtgcgg tagcggtcgc agcgctcgat ctcgaggatc ttgctggcca cctggtcgtc
     3061 gcgctgcc
//
LOCUS       DATIHC010000345         2394 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31306, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000345 DATIHC010000000
VERSION     DATIHC010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2394)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2394)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2394
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31306"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..396)
                     /locus_tag="VLF16_05575"
     CDS             complement(<1..396)
                     /locus_tag="VLF16_05575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013791382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX70383.1"
                     /translation="MATTSLLVCDDSAMARKQLLRALPADWPVEISQATNGAEALQRI
                     REGGIDLLLLDLTMPVLDGYGVLAGLRDEGLACRVIVVSGDVQEEAVRRVTELGALAF
                     LKKPADPEIVQETLQRLGLLGQGGAAAPMA"
     gene            complement(763..1347)
                     /gene="nfuA"
                     /locus_tag="VLF16_05580"
     CDS             complement(763..1347)
                     /gene="nfuA"
                     /locus_tag="VLF16_05580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S biogenesis protein NfuA"
                     /protein_id="HSX70384.1"
                     /translation="MSAITITDAAHDYLSDLLKKQNTTGIGIRVFITQPGTPYAETCI
                     AYCKPGEQKPEDTALALKEFTAWIDAVSEPFLEDAVVDYATDRMGGQLTIKAPNAKVP
                     MVNEDSPVTERINYYLQTEINPGLASHGGQVSLVDVVEEGIAVLRFGGGCQGCGQADF
                     TLKEGIEKTLLERIPELKGVRDVTDHSNRENAYY"
     gene            1480..>2394
                     /locus_tag="VLF16_05585"
     CDS             1480..>2394
                     /locus_tag="VLF16_05585"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000034 - adenine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0006146 - adenine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HSX70385.1"
                     /translation="MTDWITALPKAELHLHLEGSLEPELMFALAERNKIALPWADVES
                     LRAAYAFNNLQEFLDLYYQGADVLRSEQDFYDLTWAYLLKCREQGVIHTEPFFDPQTH
                     TDRGVPFEVVLRGIQQALVDGEQQLGITHGLILSFLRHLSEEEAFRTLEQAMPFRDAF
                     VAVGLDSSEKGFPPRLFERVFAKARSEGLLTVAHAGEEGPPEYIWEALDLLKIERIDH
                     GVRAIEDERLMRRIIDEQIPLTVCPLSNIKLCVFDDMRQHNILDMLERGVKVTVNSDD
                     PAYFGGYVGENFAALERDLGMTREQAARL"
BASE COUNT          421 a          805 c          757 g          411 t
ORIGIN      
        1 cgccatcggc gccgcggcgc cgccctggcc gagcagcccc aggcgctgca aggtttcctg
       61 gacgatctcg ggatcggccg gcttcttcag gaaggccagc gcgcccagtt cggtgacacg
      121 ccgtaccgcc tcttcctgca cgtcgccgga gaccacgatg acccgacacg ccaggccttc
      181 gtcgcgcagc ccggcgagca cgccgtagcc gtcgagcacc ggcatggtga ggtcgagcag
      241 gagcaggtcg atgccgccct cacggatacg ctgcagcgcc tcggcgccat tggtggcctg
      301 gctgatctcg accggccagt ccgccggcag ggcgcgcagc agctgcttgc gcgccatcgc
      361 ggagtcgtcg cagaccaaca gggaagtggt tgccatcggc aatgcctcga acacgaaaag
      421 cgggtggtgc tgcctgcttg ttatcactgc tgccgccaag agtcacgccg cagcggcggg
      481 caaagggccc ataaggaagc acttttttcc gggaaacgcc atagcaatat gccatcactc
      541 atcccatttg cgacaggccg cacgctccct cttgcagcga caaatgacag catccgaagg
      601 acaggactcg gtctgcggcg ggcggcccag acctccccat ggactggctc gacgtgccaa
      661 cgttccccct tcagcagcgg ccgccgtgtg cgatgaccgg aaaaatgatc tgcctgaacg
      721 aaaaaggcgc ccggaggcgc ctttttgcag aaccgcgaac actcagtaat aggcgttctc
      781 gcggttgctg tggtcggtga cgtcgcgcac gcccttgagc tcgggaatgc gctccagcag
      841 ggtcttctcg atgccttcct tgagggtgaa gtcggcctgg ccgcaaccct ggcagccgcc
      901 gccgaaacgc agcacggcga tgccctcctc gaccacgtcg accagactga cctggccgcc
      961 atggctggcc aggcccgggt tgatctcggt ctgcaggtag tagttgatgc gctcggtgac
     1021 cgggctgtcc tcgttgacca tcggcacctt ggcgttcggc gccttgatgg tcagctggcc
     1081 gcccatgcgg tcggtggcat agtcgaccac ggcatcttcc aggaacggct cgctgacggc
     1141 gtcgatccag gcggtgaatt ccttcagcgc cagggcggtg tcttccggct tctgctcgcc
     1201 cggcttgcag taggcgatgc aggtttccgc gtagggcgtg ccgggctggg tgatgaagac
     1261 gcggatgccg atgcccgtgg tgttctgctt cttcagcagg tcggacaggt aatcgtgggc
     1321 ggcgtcggta atggtgatgg cgctcatggc aactcctcgc aaacgtggcg ccagtgtacg
     1381 ccaatcgacc cgcgcggata aagtcctagt gttttagtag gaataattcc cagcgccgac
     1441 tccgctagaa tgcgcgctcg atagacccga gtgagcacca tgaccgactg gatcaccgcc
     1501 ctgcccaagg ccgaactgca cctgcacctg gagggctcgc tggagcccga gctgatgttc
     1561 gccctggccg agcgcaacaa gatcgccctg ccgtgggccg acgtggagag cctgcgcgcc
     1621 gcctacgcct tcaacaacct gcaggaattc ctcgacctct attaccaggg cgccgatgtc
     1681 ctgcgcagcg aacaggactt ctacgacctg acctgggcct acctgctcaa atgccgggaa
     1741 cagggcgtga tccacaccga accgttcttc gacccgcaga cccacaccga tcgcggcgtg
     1801 cccttcgaag tggtgctgcg cggcatccag caggcgctgg tcgacggcga gcagcaactg
     1861 ggcatcaccc acggcctgat cctcagcttc ctgcgccacc tgtccgaaga agaagcgttc
     1921 cgcaccctgg agcaggccat gccgttccgc gacgccttcg tcgccgtcgg cctggacagc
     1981 tcggagaagg gttttccgcc gcgcctgttc gagcgggtgt tcgccaaggc ccgcagcgaa
     2041 ggcctgctca ccgtcgccca cgccggcgag gaaggcccgc ccgagtacat ctgggaggcg
     2101 ctggacctgc tcaagatcga gcgcatcgac cacggcgtgc gcgccatcga ggacgagcgc
     2161 ctgatgcggc gcatcatcga cgaacagatc ccgctgaccg tctgcccgct gtccaacatc
     2221 aagctctgcg tgttcgatga catgcgccag cacaacatcc tcgacatgct cgagcgcggc
     2281 gtgaaggtga cggtgaattc ggacgacccg gcctacttcg gcggttatgt cggcgagaac
     2341 ttcgccgcgc tggagcgcga cctgggcatg acccgcgagc aggccgctcg tctg
//
LOCUS       DATIHC010000346         1680 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_42966, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000346 DATIHC010000000
VERSION     DATIHC010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1680
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42966"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            173..685
                     /locus_tag="VLF16_05590"
     CDS             173..685
                     /locus_tag="VLF16_05590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70386.1"
                     /translation="MPIAISPTGTSLYDTRPLRQTDDTTAGPLTNQNRLGIDAQQSTT
                     DRLELARERAAERAEERQALIEARREELRELQAEQAQQAAEEATQALEDRLRQQQVER
                     FLETQRNDQALAAEQAEQAELNDPLAPQNLAPAQLEANQLTFGPQQQVTTRVAIEAIA
                     TYEETRNLIA"
     gene            complement(682..>1680)
                     /locus_tag="VLF16_05595"
     CDS             complement(682..>1680)
                     /locus_tag="VLF16_05595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003303078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSX70387.1"
                     /translation="GLFASLGDSVWLARAFYVWISVYNLFVVSVAWSLMADVFDAAQA
                     RRLFAFIAAGASVGGLCGPLLSALLIEALDAAGLTLLAALLLLGGLALKHFLMDWREA
                     GGAGRPGAAPSENPHRPVPGNPFGGFTRVLGSSYLLGVSAFVVLLATVSTFLYFEQAR
                     LVEALFPERDEQVRVFGAIDFVVQAGALAAQLFITGRVAQRLGVRVLLAGVPALICVG
                     FLGLALAPVFATLAALMIVRRIGEYAFVRPGREMLFAPLDAQTKYKAKNFIDTVVYRG
                     GDAVSGWAKSLLDALGQGAVLVALVGAGCAALWAALGWYLGRRADRAESYPVSTGD"
BASE COUNT          324 a          604 c          563 g          189 t
ORIGIN      
        1 tctgccatgg gcgattgcgc ggaaagagcg tcggcgaggc cgcgtgggcg acctttctgc
       61 cgcggaaaag tgctagatca tctgttcccg gcgcttatgc ctcatccgcc taaaaggccc
      121 gcccatgcgg ccgtagactg gaactcccag gccgaaaccc agggagaacc ccatgcccat
      181 cgccatcagc cccaccggca ccagcctcta cgatacgcgc ccgctgcggc agaccgacga
      241 caccactgcc ggcccgctga ccaaccagaa ccgcctcggc atcgatgcgc agcagagcac
      301 caccgaccgc ttggagctgg cccgtgaacg ggctgccgag cgggccgagg agcgtcaggc
      361 gctgatcgag gcgcgccgcg aagagctgcg tgaactgcag gccgaacagg cgcagcaggc
      421 ggcggaagaa gccacccagg cgctggagga tcggctgcgt cagcagcagg tggaacgatt
      481 cctcgagacc cagcgcaatg accaggctct ggccgccgag caggctgagc aggccgagct
      541 gaatgatccg ctggcgccgc agaacctcgc cccggcgcag cttgaggcca accagctcac
      601 cttcggaccg cagcagcagg tgaccacgcg ggtggccatt gaagccatcg ccacctatga
      661 agaaacccgc aacctgatcg cctaatcccc ggtgctgacc gggtagctct ccgcccggtc
      721 ggcgcgccgg ccgaggtacc agccgagcgc ggcccacagc gcggcgcagc cggcgccgac
      781 cagcgccacc agcacggcgc cctgacccag ggcgtcgagc aggctcttgg cccagccgct
      841 gaccgcatcg ccgccgcggt agaccacggt gtcgatgaag ttcttggcct tgtacttggt
      901 ctgtgcgtcc agtggcgcga acagcatctc tcgccccgga cggacgaagg cgtattcgcc
      961 gatgcgccgg acgatcatca gcgccgccag cgtggcgaac accggcgcca gcgccagacc
     1021 gagaaagccc acgcatatca gcgccggcac gcccgcgagc agcacgcgta cgccgaggcg
     1081 ctgggccacc cgcccggtga tgaacagctg ggcggcgagc gcgccggcct ggaccacgaa
     1141 gtcgatggcg ccgaagaccc gtacctgctc gtcgcgctcg gggaacagcg cctccaccag
     1201 ccgtgcctgc tcgaaataaa gaaaggtgct gaccgtggcc agcagcacca cgaacgccga
     1261 gacgcccagc aaataggacg agccgagcac ccgggtgaag ccgccgaagg gattgcccgg
     1321 caccgggcgg tgcgggttct cgctgggtgc ggcgcccggg cgaccggcgc cacccgcttc
     1381 gcgccagtcc atcaggaagt gcttgagcgc caggccgccg agcagcagca gggcggccag
     1441 cagggtcagc cccgcggcat ccagcgcctc gatcagcagc gcgctgagta aggggccgca
     1501 cagaccgccg acgctggcgc cggcggcgat gaaggcgaac agccgcctgg cctgggcggc
     1561 gtcgaacacg tcggccatca ggctccaggc caccgagacg acgaacaggt tgtagaccga
     1621 gatccacacg tagaaggcgc gtgccagcca gacgctgtcg ccgaggctgg cgaacaggcc
//
LOCUS       DATIHC010000347         2774 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_16812, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000347 DATIHC010000000
VERSION     DATIHC010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2774)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2774)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2774
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16812"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            65..673
                     /locus_tag="VLF16_05600"
     CDS             65..673
                     /locus_tag="VLF16_05600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008016747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0010945 - coenzyme A diphosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HSX70388.1"
                     /translation="MLDELLQRVRDHTPRSLETDPRHPEAAVLVPLTRSDEPELVLTL
                     RASGLSTHGGEVAFPGGRRDPDDLDLAFTALREAEEEVGLPPGLVEMVGPLSPLVSRF
                     GIRVTPWVGVVPDYVEYRPNDAEIAAVFSVPLRFFLENSREVTHRIDYEGRSWYVPCF
                     HYDNYKIWGLTAVMIVELVNLAFDAGIDLERPPQPSVRIIKV"
     gene            686..1210
                     /locus_tag="VLF16_05605"
     CDS             686..1210
                     /locus_tag="VLF16_05605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HSX70389.1"
                     /translation="MKYRLGDARVEAHSESWIAPTAAVIGKVRLEKGANVWFGAVLRG
                     DNELIHIGENSNVQDGTVMHTDMGFPLTLGIGVTVGHNVMMHGCTVGDYSLIGINAVI
                     LNGAKIGKYCIIGANSLIPEGKEIPDGSLVMGSPGKVVRELTEQQKKMLEGSAAHYVH
                     NAQRYARDLAEDEA"
     gene            1207..1413
                     /locus_tag="VLF16_05610"
     CDS             1207..1413
                     /locus_tag="VLF16_05610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016494498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1289 domain-containing protein"
                     /protein_id="HSX70390.1"
                     /translation="MSGERPVKSPCVSICALDEQDICIGCQRTADEITRWGRMNNDER
                     REVLQHCAERTRAAGQFLQQPAHS"
     gene            1448..2629
                     /gene="purT"
                     /locus_tag="VLF16_05615"
     CDS             1448..2629
                     /gene="purT"
                     /locus_tag="VLF16_05615"
                     /EC_number="2.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
                     /protein_id="HSX70391.1"
                     /translation="MPRIGTPLSPTATRVLLCGSGELGKEVVIELQRLGCEVIAVDRY
                     ADAPAMQVAHRSHVISMLDGAALRAVIEAEKPHYIVPEIEAIATDTLVELEAEGFTVV
                     PTARAAKLTMNREGIRRLAAEELGLPTSPYHFADTFEAYTEAVKSVGYPCVVKPIMSS
                     SGKGQSVLKGEADLQSSWDYAQEGGRAGKGRVIVEGFIDFDYEITLLTVRHIGGTSFC
                     APVGHRQVKGDYHESWQPQAMSAKALAESERVALAVTEALGGRGLFGVELFVKGDEVW
                     FSEVSPRPHDTGLVTLISQDLSEFALHARAILGLPIPTIRQFGPSASSVILVEGESRQ
                     VAFANLGAALAEADTALRLFGKPEVSGQRRMGVTLARDESIEAARAKAVRASEAVKVE
                     L"
BASE COUNT          446 a          947 c          948 g          433 t
ORIGIN      
        1 gtcttgggcg cttcgctcct tcgtgccatg atgcccggca gaacgaaaaa gaccgagaac
       61 cgacatgctc gacgagctcc tgcagcgcgt gcgcgaccat actccgcgca gcctggagac
      121 cgacccgcgc catcccgagg cggccgtgct ggtgccgctg acccgcagcg acgagcctga
      181 gctggtgctg accctgcgcg ccagcgggct gtccacccac ggcggcgagg tggcattccc
      241 cggtggccga cgcgaccccg atgatctcga cctggccttc accgcactgc gcgaggcgga
      301 agaggaggtc ggcctgccgc ccggtctggt ggagatggtc gggccgctca gcccgctggt
      361 atcgcgcttc ggcatccgcg tcacgccttg ggtgggcgtg gtgccggact acgtcgagta
      421 ccggcccaac gacgccgaga tcgccgcggt gttctccgtg ccgctgcgct tcttcctgga
      481 gaactcgcgc gaggtcaccc accgcatcga ttacgagggg cgcagctggt acgtgccctg
      541 ctttcactac gacaactaca agatctgggg tctgacggcg gtgatgatcg tcgaactggt
      601 caacctggcg ttcgacgccg gcatcgacct ggagcggccg ccgcagccct cggtccggat
      661 catcaaggtc tgagaggatt tcccgatgaa atatcgcctg ggtgacgccc gcgtcgaagc
      721 ccattccgag agctggatcg cgccgaccgc ggcggtgatc ggcaaggtgc gcctggaaaa
      781 gggtgccaac gtctggttcg gcgccgtgct gcgtggcgac aacgagctga tccatatcgg
      841 tgagaacagc aacgtgcagg acggcacggt gatgcacacc gacatgggct tcccgctgac
      901 cctcggcatc ggcgtcaccg tcggccacaa cgtgatgatg cacggctgca ccgtgggcga
      961 ttacagcctg atcggcatca acgcggtgat cctcaacggc gccaagatcg gcaagtactg
     1021 catcatcggc gccaacagcc tgatccccga aggcaaggag atccccgacg gtagcctggt
     1081 gatgggcagc cccggcaagg tggtgcgcga gctcaccgag cagcagaaga agatgctcga
     1141 aggcagcgcc gcccactacg tgcacaacgc ccagcgctac gcccgcgacc tggccgagga
     1201 cgaggcgtga gcggcgaacg cccggtcaag tcgccctgcg tgagcatctg cgcgctggac
     1261 gagcaggaca tctgcatcgg ttgccagcgc acggcggacg aaatcacccg ctggggccgc
     1321 atgaataacg acgagcgccg cgaggtgctg cagcactgcg ccgaacgcac ccgcgccgcc
     1381 gggcagttcc tgcagcagcc cgcgcattcc tgaattcccc tgttcatcac tttcccgagg
     1441 acattccatg ccccgtatcg gtaccccctt gtcgcctacc gcgacccgcg tcctgctctg
     1501 tggctccggc gagctgggca aggaagtggt gatcgagctg cagcgcctgg gctgtgaggt
     1561 gatcgccgtg gaccgctacg ccgatgctcc ggccatgcag gtggcgcacc gcagtcatgt
     1621 gatcagcatg ctcgacggcg ccgccctgcg cgcggtgatc gaggcggaga agccgcacta
     1681 catcgtgccg gagatcgagg ccatcgccac cgacaccctg gtcgagctgg aggccgaagg
     1741 cttcaccgtg gtgcccaccg cgcgcgccgc caagctgacc atgaaccgcg agggcatccg
     1801 tcgcctggcc gccgaggagc tgggcctgcc gacctcgccc taccacttcg ccgatacctt
     1861 cgaggcctat accgaggcgg tgaaatcggt cggctatccc tgcgtggtca agccgatcat
     1921 gagctcctcc ggcaagggcc agagcgtgct gaagggcgag gccgacctgc aatcttcatg
     1981 ggattacgcc caggaaggcg gccgcgccgg caagggccgc gtcatcgtcg agggcttcat
     2041 cgacttcgac tacgagatca ctctgctcac cgtgcgccac atcggcggca cctcgttctg
     2101 cgcgccggtc ggccaccgcc aggtcaaggg tgactaccac gagtcctggc agccgcaggc
     2161 gatgagcgcc aaggccctgg ccgagtccga gcgcgtggcc ctggcggtga ccgaggccct
     2221 cggcggtcgc ggcctgttcg gcgtggagct gttcgtcaag ggcgatgagg tgtggttcag
     2281 tgaggtgtcg ccgcgcccgc acgataccgg cctggtcacc ctgatctccc aggacctgtc
     2341 cgagttcgcc ctgcacgcac gcgccatcct cggcctgccg attccgacga ttcgccagtt
     2401 cggcccgtcc gcctcttcgg tgatcctggt cgagggcgag tcgcgccagg tggccttcgc
     2461 caacctcggc gcggccctgg ccgaggcgga caccgcgctg cgtctgttcg gtaagccgga
     2521 ggtcagcggc cagcggcgca tgggcgtgac cctggcccgc gacgagagca tcgaggcggc
     2581 gcgggccaag gcggtgcgtg catccgaggc ggtcaaggtc gagctgtgag ccgactgcgc
     2641 gccggcttgt ggtggggcct ggcgctggcg gcgctgccgc tggtgctgcc gctggcgatc
     2701 catacccggc gcacggcgct gcgcctgccg cccgcagagg gcgcgcagtg cggtctggtg
     2761 gcggcggggc aggg
//
LOCUS       DATIHC010000348         1756 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12539, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000348 DATIHC010000000
VERSION     DATIHC010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1756)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1756)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1756
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12539"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..842)
                     /locus_tag="VLF16_05620"
     CDS             complement(<1..842)
                     /locus_tag="VLF16_05620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016702360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxidase family protein"
                     /protein_id="HSX70392.1"
                     /translation="MEQKSEGKCPFSGNSTPKHTAGGGTTNRDWWPNQLRVDLLSQHS
                     AKSNPLGQGFSYAEAFGSLDLQALKDDLRALMTDSQDWWPADFGHYGPLFVRMAWHSA
                     GTYRTGDGRGGAGRGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGQTISWADLMILT
                     GNVALESMGFKTFGFAGGREDTWEPDQDLYWGTETTWLGDERYSGDRELENPLGAVQM
                     GLIYVNPEGPNGNPDPLASARDIRETFGRMAMDDEETVALIAGGHTFGKTHGAAPDTN
                     VEDNP"
     gene            complement(1016..1402)
                     /gene="rplQ"
                     /locus_tag="VLF16_05625"
     CDS             complement(1016..1402)
                     /gene="rplQ"
                     /locus_tag="VLF16_05625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005762 - mitochondrial large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HSX70393.1"
                     /translation="MRHRKSGRHLSRTSAHRKAMFQNMAVSLFEHELIKTTLPKAKEL
                     RRVAEPLITLAKVDSVANRRLAFDRTRSKAIVGKLFNDLGKRYATRQGGYLRILKCGY
                     RAGDNAPMAYVELVDRPVAGQVEAAE"
     gene            complement(1448..>1756)
                     /locus_tag="VLF16_05630"
     CDS             complement(1448..>1756)
                     /locus_tag="VLF16_05630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha
                     C-terminal domain-containing protein"
                     /protein_id="HSX70394.1"
                     /translation="GGGGGGEPVVVEQEDEIDPILLRPVDDLELTVRSANCLKAENIY
                     YIGDLIQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
                     "
BASE COUNT          298 a          529 c          560 g          369 t
ORIGIN      
        1 gggttgtctt cgacgttcgt gtcgggggcg gcgccgtgcg tcttgccgaa tgtgtggccg
       61 cccgcgatga gggcgacggt ctcctcgtcg tccatcgcca tgcgtccgaa cgtctcgcgg
      121 atgtcgcgtg ccgaggccag cgggtcgggg ttgccgttgg gaccttcggg gttgacgtag
      181 atgaggccca tctggaccgc gccgaggggg ttctccagct cccggtcgcc gctgtagcgc
      241 tcgtcaccga gccaggtggt ctcggtgccc cagtagaggt cctgatccgg ctcccaggta
      301 tcttcccggc caccggcgaa gccgaaggtc ttgaagccca tcgactcgag ggcgacgttg
      361 ccggtgagaa tcatcaggtc ggcccaggaa atcgtctgcc cgtatttctg cttgatcggc
      421 cacagcaggc gtcgcgcctt gtccagattg gcattgtccg gccagctgtt gagcggtgcg
      481 aatcgctgct gaccacgacc ggcgcctccg cggccgtcac cggtacggta ggtgcctgcg
      541 ctgtgccagg ccatgcgcac gaacagcgga ccgtagtggc cgaagtcggc gggccaccag
      601 tcctgggaat cggtcatcag cgccctgagg tcgtccttca acgcctgcag atcgaggctg
      661 ccgaaggcct cggcgtagct gaagccctga cccagcggat tggatttcgc cgagtgctgg
      721 ctgagcaggt cgacgcgcag ttgattgggc caccagtcgc ggttggtcgt gccgccaccg
      781 gccgtgtgtt tgggggtgga gttacccgag aacgggcact tgccttcgct cttctgttcc
      841 atcttgctgc tcctcgtgag attagatcgg ccgcttcgtt gtcggcgatg gcagcagtct
      901 aagaagaggc gaagcaatga actaatttat tgatatcaat caactgatag ctaaatactt
      961 ttatgcaggc aacaaaaagc cgggcacatg gcccggcttt ttgagagcag cgaccttatt
     1021 cggccgcttc gacctgaccg gcaaccggac ggtcaaccag ctcgacgtac gccatgggag
     1081 cgttgtcgcc ggcacggtag ccgcacttga ggatgcgcag gtaaccgccc tgacgggtgg
     1141 cgtaacgctt gcccagatcg ttgaacagct tgccgacgat ggctttcgaa cgggtacggt
     1201 cgaaggccag acgacggttg gcaacgctgt ctaccttggc cagggtgatc agcggctcgg
     1261 caacgcggcg cagttccttg gctttcggca gggtggtctt gatcagttcg tgttcgaaca
     1321 gcgacaccgc catgttctgg aacatggcct tgcggtgggc gctggtgcgg ctcaggtgac
     1381 ggccactttt acgatgacgc atgattgaaa ttccttacca aacttcaagt tcggtgatta
     1441 cggacgatca ggcagtagcc ttatcgtcct tcttcagact tgccggcggc cagttgtcga
     1501 ggcgcatacc gagggacaga ccgcgagaag ccagaacgtc cttgatctcg gtcagggact
     1561 tcttgcccag gttcggcgtc ttgagcagct ctacttcggt gcgctggatc aggtcaccga
     1621 tgtagtagat gttctccgcc ttcaggcagt tggccgaacg cacggtcagc tcgaggtcgt
     1681 caaccggacg caggaggatc ggatcgatct cgtcttcctg ctcgaccact accggctccc
     1741 cccccccccc cccccc
//
LOCUS       DATIHC010000349         3291 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36100, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000349 DATIHC010000000
VERSION     DATIHC010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3291)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3291)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3291
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36100"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1298
                     /gene="ubiD"
                     /locus_tag="VLF16_05635"
     CDS             <1..1298
                     /gene="ubiD"
                     /locus_tag="VLF16_05635"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HSX70395.1"
                     /translation="PVLGNLFGTPERVALGMGAEDVGELREIGKLLAFLKEPEPPKGL
                     KDAWSKLPIYKKVISMAPKVLKDAPCHEVIEEGDDVDLGKLPVQTCWPGDVAPLITWG
                     LTITKGPNKERQNLGIYRQQVIGRNKVIMRWLSHRGGALDYREWCQKYPDRPYPVAVA
                     LGADPATILGAVTPVPDTLSEYAFAGLLRGHRTELVKAIGSDLQVPASAEIVLEGHIY
                     PGETAPEGPYGDHTGYYNEVDTFPVFTVERITRRREPIYHSTYTGRPPDEPAILGVAL
                     NEVFVPILQKQFPEITDFYLPPEGCSYRMAVVTMKKQYPGHAKRVMLGVWSFLRQFMY
                     TKFVIVTDDDVNARDWNDVIWAITTRMDPKRDTVMIDNTPIDYLDFASPVSGLGSKMG
                     LDATHKWPGETSREWGRVIEKDPAVVSRIDEIWNELGID"
     gene            1325..2293
                     /locus_tag="VLF16_05640"
     CDS             1325..2293
                     /locus_tag="VLF16_05640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-6-deoxy-delta-3,4-glucoseen reductase"
                     /protein_id="HSX70396.1"
                     /translation="MKVTLQPSGAVLDVQGGERILDAARRLGYDCPQSCRNGNCHICA
                     ALLVEGRVRQAGAELDHGELFTCLAEPLEDCVLHWDGVLAPGELPVRTFGCQVLELTD
                     LGGDVCRVRLRAPAGKAPRYHAGQYLLLQRDDGEWSAFSLASAPHQGRDLELHVLARE
                     DSTRQLMAQLRRTRLARVQMPFGDTHLAELPDGPLVLIAAGTGMAQMHSLIEHCRATG
                     FDHPLHLYWGVRHPDDFYHLDHWRDWQGQPGLHLHQVVSEACGWPGRCGMLHEAVCED
                     FADLAALHVYASGSPAMVYGTLDALVEAGMDAHQMRADVFAYAPRE"
     gene            complement(2304..3080)
                     /locus_tag="VLF16_05645"
     CDS             complement(2304..3080)
                     /locus_tag="VLF16_05645"
                     /inference="COORDINATES: protein motif:HMM:NF025055.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pili methyl-accepting chemotaxis
                     transducer N-terminal domain-containing protein"
                     /protein_id="HSX70397.1"
                     /translation="MLKHCFIALLVIVTLALSGPAAAAPLSAGEAMNMTGLQRSLVQR
                     MTKNYLMIGADVRVEKARSQLQESVTQFDYAHKALSLYSPNPAIKMKLDEIGQIWSVF
                     HKQVTALPDQAQAAALLVNSERLLKSSQELTDLMASHVGSMGKVVNRSGWARVQSQRI
                     AMLYMAKAWRVQAPELDAKLDIAVADFDQILKELEARPVPNEQVATSLRRVRANWAFT
                     LKGIDLHATSAFVPTSIAVSTDSLFRHMNELTRLYAGLQT"
BASE COUNT          542 a         1106 c         1116 g          527 t
ORIGIN      
        1 tgccggtgct gggcaacctg ttcggcaccc ccgagcgcgt ggcgctgggc atgggcgccg
       61 aggatgtcgg cgagctgcgc gagatcggca agctgctggc cttcctcaag gagcccgagc
      121 cgcccaaggg cctgaaggac gcctggagca agctgccgat ctacaagaag gtcatcagca
      181 tggcgcccaa ggtgctcaag gatgcgccct gccacgaggt gatcgaggag ggcgacgacg
      241 tcgacctggg caagctgccg gtacagacct gctggccggg cgacgtggcg ccgctgatca
      301 cctggggcct gaccatcacc aaggggccga acaaggagcg gcagaacctc ggcatctacc
      361 gccagcaggt gatcggccgc aacaaggtga tcatgcgctg gctcagccac cgtggcggcg
      421 cgctggacta ccgtgagtgg tgccagaagt acccggaccg tccctatccg gtggccgtgg
      481 ccctgggcgc cgacccggcg accattctcg gcgccgtcac cccggtgccg gacaccctct
      541 ccgaatacgc cttcgccggc ctgctgcgcg ggcaccgcac cgaactggtc aaggccattg
      601 gctccgacct gcaggtgccg gccagcgccg agatcgtcct cgaaggccat atctacccgg
      661 gcgagaccgc gccggaaggc ccgtatggcg accacaccgg ctactacaac gaggtcgaca
      721 ccttcccggt gttcaccgtc gagcgcatca cccgtcgccg cgagccgatc taccacagca
      781 cctacaccgg ccgcccgccg gatgagccgg cgatcctcgg cgtggcgctg aacgaggtgt
      841 tcgtgccgat cctgcagaag cagttcccgg agatcaccga cttctacctg ccgccggagg
      901 gctgctccta ccgcatggcg gtggtgacca tgaagaagca gtaccccggc cacgccaagc
      961 gggtgatgct cggcgtctgg tccttcctgc gccagttcat gtacaccaag ttcgtcatcg
     1021 tcaccgacga cgacgtcaac gcgcgcgact ggaacgacgt gatctgggcc atcaccacgc
     1081 gcatggaccc caagcgcgac acggtgatga tcgacaacac gccgatcgac tacctcgact
     1141 tcgcctcgcc ggtctccggc ctcggctcga agatgggcct cgacgccacc cacaagtggc
     1201 cgggcgaaac cagccgcgag tggggccggg tgatcgagaa ggaccctgcc gtggtctcac
     1261 gtatcgacga gatctggaac gagttgggca tcgattgatg agcgggtcat ctgccgacgg
     1321 cttcatgaag gtcaccctgc aaccctcggg cgcggtactc gacgtacagg gcggcgagcg
     1381 catcctcgat gccgcgcggc gcctgggcta cgactgcccg cagagctgcc gcaacggcaa
     1441 ctgccacatc tgcgcggcgt tgctggtgga ggggcgggtg cgccaggccg gcgccgagct
     1501 ggaccacggc gagctgttca cctgcctggc cgagccgctg gaagactgcg tgctgcactg
     1561 ggacggcgta ctcgccccag gcgagctgcc ggtgcgcacc ttcggctgcc aggtgctcga
     1621 gctcaccgac ctcggcggcg atgtctgccg cgtgcgcctg cgcgccccgg ccggcaaggc
     1681 gccgcgctac cacgccggac agtacctgct gctgcagcgc gacgacggcg agtggtcggc
     1741 cttttccctg gcctcggcgc cgcatcaggg gcgcgacctg gagctgcacg tgctggcccg
     1801 cgaggacagc acgcgccagc tgatggccca gttgcggcgc acccgcctgg cgcgggtgca
     1861 gatgcccttc ggcgataccc acctagccga gttgcccgac gggccgctgg tgctgatcgc
     1921 cgccggtacc ggcatggcgc agatgcacag cctgatcgaa cactgccgcg ccaccggctt
     1981 cgaccacccc ctgcacctgt actggggcgt gcgccacccc gacgatttct accatctgga
     2041 ccactggcgc gactggcagg ggcaacccgg cctgcacctg caccaggtgg tcagcgaggc
     2101 ctgcggctgg cccgggcgtt gcggcatgct gcacgaggcg gtgtgcgagg acttcgccga
     2161 tctggcggcc ctgcacgtct acgccagcgg ctcgccggcc atggtctacg gcaccctcga
     2221 cgcactggtg gaagccggca tggacgccca ccagatgcgc gccgacgtgt tcgcctacgc
     2281 gccgcgcgaa tgaggcgcgg tcgtcaggtc tgcaggccgg cgtagagacg ggtcagttcg
     2341 ttcatgtggc ggaacagcga gtcggtgctg acggcgatcg aggtcggcac gaaggcgctg
     2401 gtggcgtgca ggtcgatgcc cttgagggtg aacgcccagt tggcccgcac tcggcgcagc
     2461 gaggtggcga cctgctcgtt cggcacgggg cgggcctcga gctccttgag gatctgatcg
     2521 aaatcggcca cggcgatgtc cagcttggcg tccagctcgg gcgcctgcac acgccaggcc
     2581 ttggccatgt agagcatggc gatgcgctgg ctctgcacgc gcgcccatcc gctgcggttg
     2641 accaccttgc ccatgctgcc cacgtggctg gccatcaggt cggtcagttc ctgcgagctc
     2701 ttcagcagac gctcgctgtt gaccagcagg gcggcggcct gcgcctgatc cggcagggcg
     2761 gtcacctgct tgtggaaaac gctccagatc tggccgatct catccagctt catcttgatc
     2821 gccgggttgg gcgaatacag gctcagggcc ttgtgggcat agtcgaactg cgtcaccgat
     2881 tcctgcagct ggctacgggc cttttcgacg cgcacgtcgg cgccgatcat caggtagttc
     2941 ttggtcatgc gctgcaccag cgagcgctgc aggccggtca tgttcatcgc ttcgccggca
     3001 gacagcggcg cggcggcggc gggcccgctc agggcgaggg tgacaattac cagcagggcg
     3061 ataaaacagt gcttgagcac tcgaacctcc agtttttttg gacaaataga cgtcatcgcc
     3121 ggcgccagat ctggcgcagc gtgccccgaa atgcatgagt tgttgttgga tgagcggcgg
     3181 ggtggcagga acgcaggtcc tgatcgggac cagggggtca ctgcgagggg cggggattct
     3241 aacggctaaa tccgcgatgc gctgaaggct ttttgatatt acggacggca g
//
LOCUS       DATIHC010000350         4156 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_26206, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000350 DATIHC010000000
VERSION     DATIHC010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4156
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26206"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..587
                     /locus_tag="VLF16_05650"
     CDS             <1..587
                     /locus_tag="VLF16_05650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015477503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1302 family protein"
                     /protein_id="HSX70398.1"
                     /translation="YDGSLAGDQACADISGKQLCRGPIFHNYERIEAFNLSIGTIYNF
                     GPTLSFDSLMGVAELASEHARASDLSYTAYDGSKRGFSGRPNGAYVSGYDEEDQLDRD
                     AYGYTLALSGTWNDVYAGVNLSPFAVFKHNFQGNSHQTGNFVEGAMAYSVGMRASYLN
                     SLEAEVQYTEYYGAGQNNSGRDRDNVGVNLKYSF"
     gene            646..2016
                     /locus_tag="VLF16_05655"
     CDS             646..2016
                     /locus_tag="VLF16_05655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1329 domain-containing protein"
                     /protein_id="HSX70399.1"
                     /translation="MLIKHSLMGAAVALALSAGSALAAVSADEAAKLGTTLTPFGAEK
                     AGNADGSIPAWTGGITQPPAGYKGSGQHHVDPFPEDKPLFTITKANLDQYKDKLSAGQ
                     IALFNSYPESFQMPVYQSRRSGSAPQWVYDNTLKNATTAKLIEGGNGFADAYGGIPFP
                     IPKDGVEALWNHIVRYRGTYITRRSAEVAVQRNGAYSPVVSEVEALFRYYNPKGSYAD
                     LDNILFYYLNFTKSPARLAGGAALVHETLDQVKEPRQAWAYAAGQRRVRRAPNLAYDT
                     PISASEGLRTADDTDMFNGAPDRYEWKLLGKRELYIPYNNYKIAGEGVKYEDLLQVGH
                     INPALTRNELHRVWVVEGTLKSGSRHVYSKRTLYLDEDSWQAAVVDQYDGRGELWRVS
                     IAYLKNYYDLPTTWSAMEAFHDLQSRRYHVQNLDSEEPTTAVFDKPVPEDSEFTPSAL
                     RRRGTR"
     gene            2297..3361
                     /locus_tag="VLF16_05660"
     CDS             2297..3361
                     /locus_tag="VLF16_05660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017679060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YCF48-related protein"
                     /protein_id="HSX70400.1"
                     /translation="MRRTRSGCLTSVQAPARHPSPLAKALSLLSVCSVLALAAPLPLQ
                     AADAAAVTSIESPKAVSSLLLDVARAGKRLVAVGDRGHILFSEDAGRNWVQARVPTRQ
                     LITAVYFVDDKHGWAVGHDAQILATDDGGANWELQFEDLQREAPLLDVWFRDTNTGYA
                     VGAYGALLETTDGGKSWNDVSDRLDNEDGYHINGITAVKDAGLFVVGEVGTMFRSADW
                     GQTWEKVQGPYEGTLFGALGTSSANTLLVYGLRGNLFRSTDFGNSWEQIKLLSENGPL
                     EFGLANGSLLKNGSLVVVGHGGSVLTSDDSGRSFTVVNRADRASLAGAIDDAAGNLIL
                     VGQGGVHLATPTGTEPGKKQ"
     gene            3380..>4156
                     /locus_tag="VLF16_05665"
     CDS             3380..>4156
                     /locus_tag="VLF16_05665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HSX70401.1"
                     /translation="MSSMSSHHQDKATFLERLIFNNRPIVIMLCAVITLLLLWQASQI
                     RPSTSFEKMIPLEHPFIEKMLEHRNDLANLGNTVRISVEAKDGDIFSKEYMETLRQIH
                     DEVFYIPGVDRSGLKSLWSPSVRWTEVTEEGFDGGEVIPQTYDGSQQSLGELRGNVLK
                     SGQVGRLVANNFKSSIIDVPLLEQYPDPNDQSKLLKLDYRQFSHELEEKIRDKYQAQN
                     PNVQVHIVGFAKKVGDLIDGLIMVVAFFGVALAITLVLLYW"
BASE COUNT          785 a         1432 c         1266 g          673 t
ORIGIN      
        1 tctatgacgg tagcctcgcc ggcgaccagg cctgcgccga catctccggc aagcagctgt
       61 gccgcgggcc gatcttccac aactacgagc gcatcgaggc gttcaacctg tccatcggca
      121 ccatctacaa cttcggcccg acgctcagct tcgactcgct gatgggggtg gccgagctgg
      181 cctccgagca cgcccgtgcc agcgacctga gctacaccgc ctacgacggc agcaagcgcg
      241 gcttctcggg tcggcccaac ggggcctacg tgtccggcta cgacgaggag gatcagctcg
      301 accgcgacgc ctacggctat accctggccc tgtccggtac ctggaacgac gtgtacgccg
      361 gggtcaacct gtcgccgttc gccgtgttca agcacaactt ccagggcaac tcgcaccaga
      421 ccggcaactt cgtcgagggg gcgatggcct attcggtcgg catgcgcgcc agttacctga
      481 acagcctgga ggccgaagtg cagtacaccg aatactatgg cgccgggcag aacaacagcg
      541 gccgcgaccg cgacaatgtc ggggtcaacc tcaagtactc cttctgaaac cgcatcccag
      601 ggccaggcgg cataccgccc ggctcgctag tacggagaat cacccatgct gatcaaacac
      661 tcgctgatgg gcgccgccgt cgccctcgcg ctttccgccg gcagcgcgct ggccgccgtt
      721 tccgccgacg aggcggccaa gctcggcacc acgctgacgc ccttcggcgc ggaaaaggcc
      781 ggcaacgccg acggcagcat tccggcctgg accggtggca tcacccagcc gccggccggc
      841 tacaagggca gcggccagca ccacgtcgat ccgttcccgg aagacaagcc actgttcacc
      901 atcaccaagg ccaacctgga ccagtacaag gacaagctga gcgcgggcca gatcgccctg
      961 ttcaattcct acccggaaag cttccagatg ccggtgtacc agagccgccg ttccggctcg
     1021 gcgccgcagt gggtctatga caacaccctg aagaacgcca ccaccgccaa gctgatcgag
     1081 ggcggcaacg gcttcgccga cgcctacggc ggcatcccgt tcccgatccc gaaggatggc
     1141 gtcgaggcgc tgtggaacca catcgtgcgc tatcgcggca cctacatcac ccgccgctcc
     1201 gccgaggtgg cggtgcagcg caacggcgcc tattcgccgg tggtgtccga ggtcgaggcg
     1261 ctgttccgct actacaaccc gaagggcagc tacgccgatc tcgacaacat cctcttctac
     1321 tacctgaact tcaccaagag cccggcgcgc ctcgccggtg gcgcggcgct ggtgcacgag
     1381 accctggatc aggtgaagga gccgcgccag gcctgggcct acgcggccgg ccagcgccgc
     1441 gtgcggcgtg cgccgaacct ggcctacgac acgccgatct cggcctccga aggcctgcgc
     1501 accgccgacg acaccgacat gttcaacggc gcgccggacc gctacgagtg gaagctgctc
     1561 ggcaagcgcg agctgtacat cccctacaac aattacaaga tcgccggcga aggggtgaag
     1621 tatgaggatc tgctacaggt cggccacatc aacccggcgc tgacccgcaa cgagctgcac
     1681 cgcgtgtggg tggtggaggg cacgctgaag tccggctcgc gccatgtgta ctccaagcgc
     1741 accctgtacc tcgacgagga cagctggcag gctgccgtcg tcgaccagta cgacggccgt
     1801 ggcgagctgt ggcgcgtgtc gatcgcctac ctgaagaact actacgacct gcccaccacc
     1861 tggtcggcaa tggaggcttt ccacgatctg caaagccgcc gctaccacgt gcagaacctg
     1921 gacagcgaag agccgaccac cgccgtgttc gacaagccgg tacccgagga cagcgaattc
     1981 accccctcgg ccctgcgtcg ccgcggcacc cgctgatcgc aactactccg tcgctcgttc
     2041 gagcggcttt ctctcgaccc ggtcattcag gccgggtcgt tcttttttct acgccgtcgc
     2101 tcaaccctgt ctggtggccc gctacggctc tcggcagcct ctgcgacggg ggattcgcgg
     2161 cgtaaccggc gcttaacaaa acataacgtc gcgccgattg tcagtttttt ccaaagccgt
     2221 atagcatgag ccggcctaaa gaaggcgctg aacccactta taagaataaa gggggaaata
     2281 tatgcgtgag cccgtcatgc ggcgcacccg ctccggttgc ctgacttccg tccaggcccc
     2341 ggcccgtcat ccatcgccgc tggcgaaagc gctgtccctg ctcagcgtat gttccgttct
     2401 ggccctggcc gcgcccctgc cgttgcaggc cgcggacgcc gccgccgtca cctccatcga
     2461 atcgcccaag gccgtcagca gcctgctgct ggacgtcgcc cgtgccggca agcgcctggt
     2521 cgcggttggt gatcgtggtc acatcctgtt ttccgaagac gccggtcgca actgggtcca
     2581 ggcccgggtg ccgacccgtc agctgatcac cgccgtgtac ttcgtcgacg acaagcacgg
     2641 ctgggcggtc ggccacgacg cgcagatcct cgccaccgac gacggcggtg ccaactggga
     2701 actgcagttc gaagacctgc agcgcgaagc gccgctgctg gacgtctggt tccgcgacac
     2761 caacaccggt tatgccgtgg gcgcctacgg tgcgctgctg gaaaccaccg atggcggcaa
     2821 gagctggaac gacgtcagcg atcgcctgga caacgaagac ggctatcaca tcaacggcat
     2881 caccgccgtg aaggatgccg gcctgttcgt cgtgggcgag gtgggcacca tgttccgctc
     2941 cgccgactgg ggccagacct gggagaaagt ccagggcccg tacgaaggca ccctgttcgg
     3001 cgcactcggc acctccagcg ccaatacgct gctggtctac ggcctgcgcg gcaacctgtt
     3061 ccgctccacc gacttcggca acagctggga gcagatcaag ctgctctccg agaacggtcc
     3121 gctggagttc ggcctggcca acggcagcct gctcaagaac ggctcgctgg tcgtggtcgg
     3181 ccatggcggc agcgtgctga ccagcgacga ttccgggcgc agcttcaccg tggtcaaccg
     3241 tgccgaccgt gcctcgctgg ccggcgccat cgacgacgcg gcgggcaacc tgatcctggt
     3301 gggtcagggc ggcgtgcacc tcgctactcc gactggcacc gagccaggca aaaaacaata
     3361 agccggggcg aatgagcata tgagttccat gagcagccat caccaggaca aggcgacctt
     3421 cctcgagcgc ctgatcttca acaaccggcc gatcgtgatc atgctgtgcg cagtgatcac
     3481 cctgctgctg ctgtggcagg cctcgcagat ccgtccttcg accagcttcg agaagatgat
     3541 tccgctggag caccccttca tcgagaagat gctcgagcac cgcaacgatc tggccaacct
     3601 gggcaacacc gtgcgtatct ccgtggaagc gaaggatggc gacatcttca gcaaggagta
     3661 catggagacc ctgcgccaga tccacgacga ggtgttctac atccccggcg tcgaccgttc
     3721 cggtctgaag tcgctgtgga gcccgagcgt gcgctggacc gaagtgaccg aagagggctt
     3781 cgacggcggc gaggtcatcc cgcagaccta cgacggctcg cagcagagcc tcggcgaact
     3841 gcgcggcaac gtgctgaagt ccggccaggt cggtcgcctg gtggccaaca acttcaagtc
     3901 cagcatcatc gacgtgccgc tgctcgagca gtacccggac ccgaacgacc agagcaagct
     3961 gctcaagctg gactaccgcc agttctccca tgagctggaa gagaagatcc gcgacaagta
     4021 ccaggcgcag aaccccaatg tgcaggtgca catcgtcggc ttcgccaaga aggtcggtga
     4081 cctgatcgac ggcctgatca tggtggtggc tttcttcggc gtcgccctgg ccatcaccct
     4141 ggtgctgctg tattgg
//
LOCUS       DATIHC010000351         2718 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5780, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000351 DATIHC010000000
VERSION     DATIHC010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2718
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5780"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1150
                     /locus_tag="VLF16_05670"
     CDS             <1..1150
                     /locus_tag="VLF16_05670"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid aminotransferase"
                     /protein_id="HSX70402.1"
                     /translation="GLNEAFNADTRSTKVNLGVGVYYNEEGRIPLLRAVAEAEKARIE
                     AHAPRGYLPIEGIAAYDSAVQKLLFGADSALLAEGRVVTTQAVGGTGALKTGADFLKR
                     LLPDAVVAISDPSWENHRALFETAGFPVQNYRYYDADTHGVNRAGLLEDLKALPARSI
                     VVLHACCHNPTGVDLSLDDWKAVLEVLREREHVPFLDIAYQGFGEGIDQDAFAVRLFA
                     DAGLPFFVSSSFSKSFSLYGERVGALSVVTASKDEAGRVLSQAKRVIRTNYSNPPTHG
                     ATVVASVLNSPELRALWEQELGEMRERIRDMRLAMVEQLAALGAKRDFGFVARQRGMF
                     SYSGLTTEQVERLKNEFGIYAVGTGRICVAALNRNNLDAVTRAIVQVL"
     gene            1219..1294
                     /locus_tag="VLF16_05675"
     tRNA            1219..1294
                     /locus_tag="VLF16_05675"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1252..1254,aa:Asn,seq:gtt)
     gene            complement(1760..2119)
                     /locus_tag="VLF16_05680"
     CDS             complement(1760..2119)
                     /locus_tag="VLF16_05680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5064 family protein"
                     /protein_id="HSX70403.1"
                     /translation="MFEPGHLHRASLPGQTEFSVDLYYQVRSDPKEGQMLHFRMEGQI
                     AGKAFKDEFELHRDTAFNFASVATRVAAKHGLPTNHSLIMRGHSEFDRMFEDIRDKLG
                     AKPGETVNFEHLEKDGL"
     gene            complement(2187..2504)
                     /locus_tag="VLF16_05685"
     CDS             complement(2187..2504)
                     /locus_tag="VLF16_05685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003149704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2288 domain-containing protein"
                     /protein_id="HSX70404.1"
                     /translation="MTEQASTLYAKLLGETAQIGWQELQPFFARGQLLWVGEALDLVE
                     VAQAVAEDAGAKVAAWLQAGQVAKVDEARAQDYLQRDPDLWAVVVSPWVLIQERSAGA
                     SLH"
BASE COUNT          470 a          933 c          820 g          495 t
ORIGIN      
        1 gggcctgaac gaagccttca acgccgatac ccgcagcacc aaggtcaacc tgggtgtggg
       61 cgtgtactac aacgaggaag gccgaattcc gctgctgcgc gccgttgccg aggccgagaa
      121 ggcgcgtatc gaggctcacg ccccgcgcgg ttacctgccg atcgaaggca tcgccgccta
      181 cgacagcgcc gtccagaagc tgctgttcgg cgcggactcc gccctgctgg ccgaaggccg
      241 cgtggtcacc acccaggccg tcggcggcac cggcgccctg aagaccggcg ccgatttcct
      301 caagcgcctg ctgcccgacg ccgtcgtcgc catcagcgac ccgagctggg aaaaccaccg
      361 cgcgctgttc gaaaccgccg gcttcccggt gcagaactac cgttattacg acgccgacac
      421 ccacggcgtg aaccgcgccg gcctgctgga agacctcaag gccctgccgg cgcgctccat
      481 cgtcgtgctg cacgcctgct gtcataaccc aaccggcgtc gacctctctc tggatgactg
      541 gaaagccgta ctggaagttc tgcgcgagcg cgagcacgta cccttcctcg acatcgcata
      601 tcagggcttc ggcgagggca tcgaccagga cgccttcgcg gtgcgcctgt tcgccgacgc
      661 cggcctgccg ttcttcgtct ccagctcctt ctccaagtcc ttttcgctgt acggcgagcg
      721 ggtcggcgcg ctgtccgtcg tcaccgccag caaggacgag gccggccgcg tgctgtcgca
      781 ggccaagcgg gtgattcgta ccaactattc gaacccgccg acccacggcg ccaccgtggt
      841 cgccagcgtg ctcaacagcc ccgagctgcg cgcgctctgg gagcaggagc tgggcgagat
      901 gcgcgagcgc atccgcgaca tgcgcctggc catggtcgag caactggcgg cactgggcgc
      961 caagcgggac ttcggcttcg tcgcccgcca gcgcggcatg ttctcctatt ccggcctgac
     1021 caccgaacag gtggaacgcc tgaagaacga gttcggcatc tacgccgtcg gcaccggccg
     1081 catctgcgtc gccgcgctga accgcaacaa cctggacgcc gtcacccgcg ccatcgtcca
     1141 ggtgctctga gacgaatcgg gaagtcgccc tacgggtgtt gacttcccct ttttaatcag
     1201 taggatacgc accgctgttc cgcgatagct cagtcggtag agcaaatgac tgttaatcat
     1261 tgggtccctg gttcgagtcc aggtcgcgga gccaaattcg aaagcctcag gtgaaaacct
     1321 gaggcttttt tgttgcctgc cggactctca ccagggactg cgtccccggc tattcggcct
     1381 gcggcctccc cccttcgggg ccgctgctgg cgcgcgttcg gctggcgccg tcgagcccag
     1441 gtcgcggagc caaatccgaa agcctcaggt gaaaacctgg ggcttttttg ttgcctgcgc
     1501 tggactctca ccagggactg cgtccccggt tattcggcct gcggcctcac cccttcgggg
     1561 ccgccgctgg cgcgcgttcg ttgggacgct cgagtacagg tcgcgtagag ccgaattcga
     1621 aagcctcagg tgaaagccgg ggggcttcat tgctgccgaa atctgacaac ggcaaggagg
     1681 tccgcctggc gcacgcggcg cacctacgaa aaagccaata aaaagccccg ccttggcggg
     1741 gcttggtcag ggcggcagct cagagcccat ccttctccag atgctcgaag ttcaccgtct
     1801 cgccgggctt ggctcccagc ttgtcgcgga tgtcttcgaa catcctgtcg aactcgctat
     1861 gcccgcgcat gatcagcgag tggttggtcg gcaggccatg tttggccgcc acgcgcgtgg
     1921 ccacgctggc gaagttgaag gcggtatcac ggtgaagctc gaactcgtcc ttgaaggcct
     1981 tgccggcgat ctgcccttcc atgcggaagt gcagcatctg cccctccttc ggatcgctgc
     2041 gcacctggta atagaggtct acggaaaact cggtctggcc cggcaggctg gcacggtgca
     2101 gatggcccgg ttcgaacatg gcggctctcc ttgcaggtct ggaaaggtga ttctagacca
     2161 gcgtttcgct ctgtcaccga cctcgatcag tgcagcgatg caccagcgct gcgctcctgg
     2221 atgagtaccc agggtgacac caccaccgcc cacagatccg ggtcgcgctg caggtagtcc
     2281 tgcgcgcgcg cctcgtcgac cttggcgacc tggccggcct gcagccaggc cgcgaccttg
     2341 gcgccggcat cctcggccac ggcctgcgcg acctccacca gatccagcgc ctcgcccacc
     2401 catagcaact ggccacgggc gaagaacggt tgcagctcct gccagccgat ctgcgcggtc
     2461 tcgccgagga gcttggcata gagagtgctt gcttgttctg tcatgacttg ccctgggtag
     2521 aaagcacacg tgcggagggg cgccatgata gcgcccgtct ctgcccaggc aagttcgcca
     2581 cctcgcatca actggcagaa ggacctttca gtcaccaaaa caagcgccgt tattctgtac
     2641 gtttatttca atcaagcgac accaccccgc tccgcttccc actgtgcgct tttcaagccg
     2701 caaaccagag ttctacac
//
LOCUS       DATIHC010000352         2104 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5789, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000352 DATIHC010000000
VERSION     DATIHC010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2104
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5789"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1299)
                     /locus_tag="VLF16_05690"
     CDS             complement(<1..1299)
                     /locus_tag="VLF16_05690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003244631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family outer membrane protein"
                     /protein_id="HSX70405.1"
                     /translation="MRVLKPLCNGILLAIACTQAQAMTLSEAIQSTIDNHPELHASMN
                     DRLSADEEVKIARGGYLPTVDLLMGYGREQTDSPSTRALGDHNKETLNYRDAELRLRQ
                     MLFDGFNTPNEVARTESVVDSRAYYVLGTSESLALRTVEVYLEVLKRREMVTLARNNL
                     QAHQRIGDQIGLRSERGVGSTADLDQSEARLALAENNLYTEQVNLADAEANFFSATGR
                     MPSELETPATIKGEMPADLLAARQAVVDNNPFLKSAQADVHAAEKQYEVAKSPFYPRF
                     DLELATTADDNVQGDEGHYNTWRAAVVMNYNLFNGMRDKARLQSAAHQINQSMDIRNN
                     ALRVLNENLSLAWNAMENSRLQTPKARDYAEYTSRVREAYQQQFGLGQRTLLDLLDSE
                     NELFTANRRYTEVRYIEEFSMYRVIAAMGELLRKQNIAVPA"
     gene            1759..>2104
                     /locus_tag="VLF16_05695"
     CDS             1759..>2104
                     /locus_tag="VLF16_05695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009047640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="retention module-containing protein"
                     /protein_id="HSX70406.1"
                     /translation="MATLIGVVSQVVGEVFAVAGDGSRRPLIEGDRVYAGEQLVTGAA
                     GAVAISLANGEMLTVGRDSSLALNEQMLAGGDGRGAQNQAQEPAAPSDDDLTNVEQLQ
                     AAIEAGVDPTQVG"
BASE COUNT          364 a          598 c          701 g          441 t
ORIGIN      
        1 ggctgggact gcgatgttct gcttcctgag cagttcgccc atggccgcga tgacgcgata
       61 catggagaac tcctcgatgt aacgcacctc ggtatagcgg cgattggcgg tgaacagttc
      121 gttctcgctg tcgagcaggt cgagcagggt gcgttgaccg aggccgaact gctgctggta
      181 ggcctcacgt acccgcgagg tgtattccgc gtaatcccgg gccttggggg tctgcaggcg
      241 cgagttttcc atcgcgttcc aggccagcga gaggttttcg ttgagtaccc gcagcgcgtt
      301 gttgcggatg tccatggact ggttgatctg gtgcgcggcc gattgcaggc gggccttgtc
      361 gcgcatgccg ttgaacaggt tgtagttcat caccacggcg gcgcgccagg tgttgtagtg
      421 gccctcgtcg ccctgcacgt tgtcgtcggc ggtggtggcc agttccagat cgaagcgcgg
      481 gtagaagggc gacttggcca cttcgtactg cttctctgcg gcgtgcacgt cggcctgggc
      541 ggatttgagg aaggggttgt tgtcgaccac cgcctggcgc gcggcgagca ggtcggccgg
      601 catctcgccc ttgatggtgg cgggggtctc cagttcgctc ggcatgcgcc cggtggcgct
      661 gaagaagttg gcctcggcgt ccgccaggtt gacctgctcg gtatagaggt tgttctcggc
      721 cagggccaaa cgcgcctcgg actggtccag gtccgcggtg ctgcccacac cgcgctcgct
      781 gcgcaggccg atctgatcgc cgatgcgctg gtgcgcctgc aggttgttgc gcgccagggt
      841 caccatctcg cggcgcttga gcacctccag atagacctcg acggtgcgca gggccaggct
      901 ctcggaggtg ccgagcacgt agtaggcgcg cgagtcgacc accgattcgg tgcgggccac
      961 ctcgttcggg gtgttgaagc cgtcgaacag catctgccgc aggcgcagct cggcatcgcg
     1021 gtagttcagc gtttccttgt tgtggtcgcc gagtgcacgg gtgctcgggc tgtcggtctg
     1081 ctcgcggccg tagcccatga gcagatcaac ggtcggcagg tagccgcccc tggcgatctt
     1141 cacttcctca tccgcggaga gacgatcatt catgctggca tgcagctcgg gatgattgtc
     1201 gatggtgctc tggatcgctt ccgagagcgt catggcttgg gcctgggtgc aggcaatggc
     1261 cagcaaaatg ccattgcaga gcggtttcag aacgcgcatg aggtttctcc ttattagtaa
     1321 tgctcggttc ctgtcgccaa aaaactgacg atttctcgtc tggccgggcg catcaggcct
     1381 gtaacatcac agctaagaac atctgcacag gaagctaaga agaattcttc acaagagtta
     1441 tgaggaaaaa gtcttatgca ctctgtgaga accagcacat tgtttcttcc gcaagccgcg
     1501 aaaaacgggg cattcaggcc ttttcgcgac taaccagtcg gtcaaatgca gttttggagc
     1561 ataaggggcg gggatgtttc tgaaggagta ggccggtgca gttggagcga cacttttttg
     1621 tcgcatttga cattaacgag caggcgcacc gctcgattct cagggttttc ttcgcgcata
     1681 cccccggttc ggaaggtgat ttgacccctt ttgaaacctg tcgacgtggt cggcagctgt
     1741 agtgcggagg aaggaatcat ggctactttg ataggtgtcg tcagtcaggt cgtcggcgaa
     1801 gtcttcgcgg tagccggcga tggatcgcgc agaccgctaa tcgaaggcga tcgcgtctat
     1861 gccggcgaac aactggtcac cggcgccgcc ggcgcggttg cgatctctct cgccaacggc
     1921 gagatgctga cggtggggcg cgacagcagc ctcgccctca acgagcagat gctggccggt
     1981 ggcgatggcc ggggcgccca gaaccaggcg caagagccag ccgcaccctc cgacgacgac
     2041 ctcaccaatg tcgaacaact gcaggccgca atcgaggcgg gcgtggaccc gacgcaggtc
     2101 ggcg
//
LOCUS       DATIHC010000353         2690 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37846, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000353 DATIHC010000000
VERSION     DATIHC010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2690)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2690)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2690
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37846"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(44..394)
                     /gene="rplS"
                     /locus_tag="VLF16_05700"
     CDS             complement(44..394)
                     /gene="rplS"
                     /locus_tag="VLF16_05700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010220244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HSX70407.1"
                     /translation="MTNKIIQQLEAEQMNKEIPAFAPGDTVIVQVKVKEGDRSRLQAF
                     EGVVIAKRNRGLNSAFTVRKISSGVGVERTFQTYSPLIDSVSVKRRGDVRKAKLYYLR
                     DLSGKAARIKEKLS"
     gene            complement(435..1178)
                     /gene="trmD"
                     /locus_tag="VLF16_05705"
     CDS             complement(435..1178)
                     /gene="trmD"
                     /locus_tag="VLF16_05705"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003462703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0030488 - tRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HSX70408.1"
                     /translation="MRVEVISIFPEMFAAISQYGITSRAVKQGLLQLNCHQLRDFTDD
                     RHQTVDDRPFGGGPGMVMKIKPLEGALAAAKAAAGESAKVVYLSPQGRQLDQQGVREL
                     ASEQALILIAGRYEGIDERFIQAHVDEEWSIGDYVLSGGELPAMVLIDAVTRLLPGAL
                     GHADSAEEDSFSDGLLDCPHYTRPEVYEGKRVPDVLLSGNHEHIRRWRLQQALGRTWE
                     RRADLLDSRSLSGEEKKLLEEYIRQRDDS"
     gene            complement(1189..1722)
                     /gene="rimM"
                     /locus_tag="VLF16_05710"
     CDS             complement(1189..1722)
                     /gene="rimM"
                     /locus_tag="VLF16_05710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011059444.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HSX70409.1"
                     /translation="MNATPSAEDLIVLGKITSVHGVRGEVKIYSFTDPIDNLLDYSPW
                     TLRREGEVKQVELVSGRLQGKVLVAKLKGLDDREVARTYAGFDICVPRALLPDLDEGE
                     FYWHQLEGLKVIDLQGQLLGRLDHLLETGSNDVMVVKPCPGSLDDRERLLPYTEQCVQ
                     HIDLVAGEMRVDWDADF"
     gene            complement(1728..1979)
                     /gene="rpsP"
                     /locus_tag="VLF16_05715"
     CDS             complement(1728..1979)
                     /gene="rpsP"
                     /locus_tag="VLF16_05715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HSX70410.1"
                     /translation="MVTIRLARGGSKKRPFYHLTVTNSRNARDGRFVERIGFFNPVAT
                     GAEVKLSVNQERATYWLSQGAQPSERVAQLLKEAAKAAA"
     gene            complement(2113..>2690)
                     /locus_tag="VLF16_05720"
     CDS             complement(2113..>2690)
                     /locus_tag="VLF16_05720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HSX70411.1"
                     /translation="GKPIKFIGMGEKSEALEPFHPDRIASRILGMGDVLSLIEQAEQT
                     LDREKAEKLTKKLKKGKGFDLEDFRDQLQQMKNMGGLGGLMDKLPAIGGVNLSQMAGA
                     QGTAEKQFKQMEAIIDSMTPAERRDPELISGSRKRRIALGSGTQVQDVGRLIKQHKQM
                     QKMMKKFTAKGGMAKMMRGLGGMMPGGLPKL"
BASE COUNT          461 a          859 c          815 g          555 t
ORIGIN      
        1 agcagcccgg aggctgcttc tttcaggtcg gaaaaccgtc ctatcaggac agtttttcct
       61 tgatgcgagc cgccttgccg gacaggtcgc ggaggtagta cagcttggcc ttgcgcacgt
      121 cgccgcggcg cttgacgctg acgctgtcga tcagcgggga gtaggtctgg aaggtacgct
      181 cgacgcctac gccgctggag atcttgcgca cggtgaaggc gctgttcaga ccgcggttac
      241 gcttggcgat gacgacgcct tcgaaggcct gcagacggga acggtcgcct tccttcacct
      301 tcacctgaac gatgacggtg tcacccgggg cgaaagccgg gatttctttg ttcatctgct
      361 cggcttcgag ctgctgaatg atcttgttgg tcatgctgtg ctcctaagac aaacctgggt
      421 ttgccatcga tacgttaact atcgtcccgc tggcggatgt attcctccag cagcttcttc
      481 tcttctccag aaagcgagcg gctatccaga agatcggctc gacgttccca ggtccgcccg
      541 agggcttgct gcagacgcca gcgccggatg tgttcgtggt tgccgctgag cagcacgtcc
      601 ggaacacgct tgccctcgta cacctcgggt cgggtgtagt gcgggcaatc gaggaggccg
      661 tcgctgaacg agtcctcctc ggcggaatct gcatgcccga gcgcacccgg gagcagccgc
      721 gtaacagcat cgatcagcac catcgccgga agctcaccgc cggagaggac gtaatcgccg
      781 atcgaccatt cctcatcgac atgcgcctga ataaagcgct cgtcgatgcc ttcgtagcgg
      841 ccggcgatga gaatcagcgc ctgctcgcta gccagttcac ggaccccctg ctgatccagc
      901 tggcggccct gcggcgaaag gtaaaccacc ttcgccgact ccccggcggc ggccttggcc
      961 gcggccaggg caccctccag gggttttatc ttcatcacca tgccggggcc gccgccgaag
     1021 gggcgatcgt ccaccgtctg gtgacggtca tcggtgaaat cgcggagctg gtggcagttc
     1081 aactgcaaca ggccctgctt caccgcacga ctggtaatgc cgtactgact gatggcggcg
     1141 aacatctccg ggaagatgct gatgacttcg acacgcacgg cgcggacctc agaagtccgc
     1201 gtcccagtcc acccgcatct cgccggcgac caggtcgatg tgctgcacgc actgctcggt
     1261 gtacggcagc aggcgctcgc gatcatccag gctgcccgga cagggcttga ccaccatcac
     1321 gtcgttggag ccggtttcca gcaggtggtc gaggcgcccg agcagttgcc cttgcaggtc
     1381 gattaccttc agtccttcca gctgatgcca gtagaactcg ccttcatcca ggtcgggcag
     1441 cagtgcacgg ggtacgcata tgtcgaaacc cgcgtaggta cgtgctacct cgcggtcatc
     1501 gagccccttg agcttggcca ccaggacttt gccctggagg cgaccgctga ccagctccac
     1561 ctgcttgacc tcaccctcgc gcctgagcgt ccaggggctg tagtcgagca ggttgtcgat
     1621 cgggtcggtg aaggaataga tcttcacttc cccacgcacg ccgtgcaccg aagtgatctt
     1681 gccgaggacg atcaggtcct cagcggacgg cgtagcgttc atattgctta ggcagcagcc
     1741 ttggcagctt ccttcagcag ctgagcaacg cgctcagacg gctgggcgcc ctggctcagc
     1801 cagtaggtgg cgcgctcctg gttcacggag agcttcactt cggcaccggt ggcgaccggg
     1861 ttgaagaaac cgatgcgctc gacgaagcga ccatcgcgcg cgttgcggct gttggtcacg
     1921 gtcaggtggt agaaggggcg cttcttggag ccgccacgag caagacggat ggttaccatt
     1981 gaacttcgtt cctgtaatcg gtgctaactt aaaggcacac actttgatgg gcctaggccc
     2041 gaaaggccgc atattctaag gattatccgg ctatttgcaa atctcttttt cggccaccta
     2101 tcggccgcgg gctcacaact tcggcagtcc gcccggcatc atgccgccga ggccgcgcat
     2161 catcttggcc atgccgccct tggcggtgaa tttcttcatc atcttctgca tctgcttgtg
     2221 ctgcttgatc aagcggccaa cgtcctgcac ctgagtgccg gaaccgaggg cgatgcggcg
     2281 cttgcgcgag ccgctgatca gctccgggtc gcgccgctcg gccggcgtca tggagtcgat
     2341 gatcgcctcc atctgcttga actgcttctc cgcggtgccc tgggcacccg ccatctgcga
     2401 caggttcacc ccgccgatgg ccggcaactt gtccatcagg ccaccgaggc cgcccatgtt
     2461 cttcatctgc tgcagctgat cgcggaagtc ttcgagatcg aagcccttgc ccttcttcag
     2521 cttcttggtg agtttctcgg ccttctcgcg gtcgagcgtc tgctcggcct gctcgatcag
     2581 gctgagcacg tcgcccatgc cgaggatgcg cgaagcgatg cggtccgggt ggaagggctc
     2641 gagcgcctcg ctcttctcgc ccataccgat gaacttgatc ggcttgccgg
//
LOCUS       DATIHC010000354         1773 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_570, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000354 DATIHC010000000
VERSION     DATIHC010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1773
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_570"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..625)
                     /locus_tag="VLF16_05725"
     CDS             complement(<1..625)
                     /locus_tag="VLF16_05725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSX70412.1"
                     /translation="MSNVVFITGATSGFGRATARRFAEAGWALVLSGRRHERLQELQA
                     ELEAKVPVHIATLDVRDAAAVQQMVADLPEAFRRVTVLVNNAGLALAPEPAQKVALED
                     WHTMIDTNITGLVNVTHALLPTLVEIGKGTSIINIGSVAGEWPYPGGHVYGATKAFVK
                     QFGFNLRCDLVSTGVRVTDIAPGMAETEFTLVRTKGNQAASDALYSTT"
     gene            complement(741..1502)
                     /locus_tag="VLF16_05730"
     CDS             complement(741..1502)
                     /locus_tag="VLF16_05730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HSX70413.1"
                     /translation="MSEVPAVRIDKLCKSFSDIEVLRDIDLTVNKGEVVSVLGSSGSG
                     KSTMLRCINWLEQPDRGTIRIAGQRIGYNEQAARPMTSRELAALRARTGMVFQGFNLW
                     PHLNVLQNVMEAPVQVKRMSKDEARSIALALLEKVGMEHKAEAYPYTLSGGQKQRVAI
                     ARALAMSPEVILFDEPTSALDPERVGEVLQVMKNLSAEGYTMIVVTHEMEFARAVSDQ
                     VVFLEKGKIIEKSAPEKFFSNPETERVRRFLERVD"
     gene            complement(1495..>1773)
                     /locus_tag="VLF16_05735"
     CDS             complement(1495..>1773)
                     /locus_tag="VLF16_05735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003292604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HSX70414.1"
                     /translation="PLYWRIVLPQLVIRTRPLLGNQLIIALKDTAFLTIITVQELTAA
                     ANSVQATYFIPTQAFIVVIMLYWAISICLELALRKAGAFGAKRGFDNV"
BASE COUNT          285 a          550 c          622 g          316 t
ORIGIN      
        1 tggtggtgga gtacagcgcg tcggaggccg cctggttgcc cttggtgcgc accagggtga
       61 actcggtttc ggccatgccg ggggcgatgt cggtgacacg cacgccggtg gacaccaggt
      121 cgcagcgcag gttgaagccg aactgtttga cgaaggcctt ggtcgcgcca tacacgtggc
      181 cgcccgggta gggccactcg ccggccaccg aaccgatgtt gatgatgctg gtgcccttgc
      241 cgatttccac cagggtcggc agcagcgcgt gggtgacgtt gaccaggccg gtgatgttgg
      301 tgtcgatcat ggtgtgccag tcctccagcg ccactttctg cgccggctcc ggggccagcg
      361 ccaggccggc gttgttgacc agcacggtga cgcggcggaa ggcctccggc aggtcggcga
      421 ccatctgctg cacggcggcg gcatcgcgca cgtcgagggt ggcgatgtgc accggcacct
      481 tggcctccag ctctgcctgc agttcctgca agcgctcatg gcggcgaccg gaaagcacca
      541 gtgcccagcc ggcctcggcg aaacggcggg cggtggcgcg gccgaagccg gaggtggcgc
      601 cggtgatgaa aaccacattg ctcatgtcgg gactccctgc aagggtgaaa cgggccgcca
      661 ggctggcggc ggaaaaatac gggcctaccc ggcaacgtgc gaggccggga atggcggtgg
      721 tgaagcgagt gcgcgtcgac tcagtcgacc cgttccagga agcggcgcac gcgctcggtt
      781 tccgggttgc tgaagaattt ctccggcgcc gatttctcga tgatcttgcc cttctccagg
      841 aagaccacct gatcggatac cgcgcgggcg aactccatct cgtgggtcac cacgatcatg
      901 gtatagccct cggccgagag attcttcatg acctgcagca cctcgccgac ccgctcgggg
      961 tcgagggccg aggtcggctc gtcgaacagt atcacttccg ggctcatggc cagggcgcgg
     1021 gcgatggcca cgcgctgctt ctgcccgccg gaaagcgtgt agggataggc ctcggccttg
     1081 tgctccatgc cgaccttctc cagcagcgcc agggcgatgc tgcgcgcctc gtccttgctc
     1141 atgcgcttga cctggaccgg cgcctccatg acgttctgca acacgttcag gtgcggccac
     1201 aggttgaagc cctggaacac catgccggtg cgcgctcgca gggcggccag ttcgcggctg
     1261 gtcatcggcc gtgcggcctg ttcgttgtag ccgatgcgct ggccggcgat gcggatggtg
     1321 ccccggtccg gctgctccag ccagttgatg cagcgcagca tggtggattt gcccgagccg
     1381 gacgagccga gcacgctgac cacttcgccc ttgttcacgg tcaggtcgat gtcgcgcagc
     1441 acctcgatgt ccgagaagct cttgcacagt ttgtcgatgc ggacggcggg tacctcagac
     1501 attgtcgaat cctcgcttgg cgccaaaggc accggccttg cggagcgcga gctccagaca
     1561 gatgctgatg gcccagtaca acatgatgac cacgatgaag gcctgggtcg ggatgaagta
     1621 ggtcgcctgc accgagttgg cggcggcggt cagttcctgc accgtgatga tggtcaggaa
     1681 ggcggtgtcc ttgagggcga tgatcagctg gttgccgagc agcgggcggg tgcggatcac
     1741 cagctgcggc aggacgatgc gccagtacag cgg
//
LOCUS       DATIHC010000355         2141 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19616, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000355 DATIHC010000000
VERSION     DATIHC010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19616"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..136)
                     /locus_tag="VLF16_05740"
     CDS             complement(<1..136)
                     /locus_tag="VLF16_05740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011920880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urea ABC transporter permease subunit UrtC"
                     /protein_id="HSX70415.1"
                     /translation="MTMPLNQTLLARASNAIGPKASLAVGGLILLALLAMPLLHLLPA
                     D"
     gene            complement(401..1972)
                     /gene="urtB"
                     /locus_tag="VLF16_05745"
     CDS             complement(401..1972)
                     /gene="urtB"
                     /locus_tag="VLF16_05745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020797582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0033221 - ATPase-coupled urea
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015840 - urea transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urea ABC transporter permease subunit UrtB"
                     /protein_id="HSX70416.1"
                     /translation="MPTALYRILLSLALLLPLTAHAGEAADFVAASPAKQAKLLESWA
                     AQPDPPRQALLDALQQGRVGVGAGKTAFLKVDGSWQAAEGQVVADGTPKKLRLNNRLR
                     GLLANAQAAQQLLSAEPAQRLAAAQELQKKAKPSQLSLLNAQVAAEQDEAVRAALALA
                     LANLQLVDPDPAVRLSAVRLLGESGDPLARTRLEGLLAEGVESDAAVRTAAETSLVQV
                     KRRLLVGELLGQAFSGLSLGSILLLAALGLAITFGLLGVINMAHGEMLMLGAYTTYMV
                     QIAFQKFAPGYLALYPLAALPVAFFVTAAIGMALERTVIRHLYGRPLETLLATWGISL
                     ILIQAVRVIFGAQNVEVANPGWLSGGVQVLPNLVLPYSRMVIIGFALFVVALTWLLLN
                     KTRLGLNVRAVTQNRNMAACCGVPTGQVDMLAFGLGSGIAGLGGVALSQIGNVGPDLG
                     QSYIIDSFLVVVLGGVGQLAGSVMAAFGLGIANKLLEPQIGAVLGKILILALIILFIQ
                     KRPQGLFALKGRVID"
BASE COUNT          357 a          685 c          781 g          318 t
ORIGIN      
        1 ggtccgccgg caacaggtgc agcagcggca tggccagcag ggcgagcagg atcaggccgc
       61 cgacggccag agaagccttc gggccgatgg cgttgctcgc ccgggcgagc agggtttgat
      121 tgagtggcat ggtcatcggg gcatgctcgc gtcaagtggc gcaccgcggt gcaggctgcc
      181 agcgcgccag gctagacgtg gggcgcaggc gatggtcatt cccccggcaa gccccacaac
      241 aacgcatggc gcgttggcag tcgcaacccg aagggccgct gactcgatgg cggctagagc
      301 attcaaaaaa ttctggtgtg gcagcattct tctgttcctt ctgcgcaatg ccgccagcga
      361 ggcagcggcg cggtcgtcaa ttggcgtgag cacgccccgc ttaatcgatc acccgtcctt
      421 tcagtgcgaa cagtccctgc ggacgtttct ggataaacag aatgatcagc gcgaggatca
      481 ggatcttgcc gagcacggcg ccgatctgcg gctccagcag cttgttggcg atgccgaggc
      541 cgaaggcggc catgacgctg ccggccagct ggccaacacc gccgagcacc accaccagga
      601 acgagtcgat gatgtagctc tggcccaggt ccgggccgac gttgccgatc tgactcaggg
      661 ccacgccacc gaggccggcg atgccggagc cgaggccgaa ggcgagcatg tccacctggc
      721 cggtcggcac gccacagcag gccgccatgt tgcggttctg ggtgacggcg cggacgttga
      781 gaccgaggcg agtcttgttc agcagcagcc aggtcaacgc caccacgaac agggcgaagc
      841 cgatgatcac catgcggcta tacggcagca ccaggttggg cagcacctgc acgccgccgg
      901 acagccagcc ggggttggcg acctcgacgt tctgcgcgcc gaagatcacc cgcacggcct
      961 ggatcaggat caggctgatg ccccaggtcg ccagcagggt ttccagcggg cggccgtaga
     1021 ggtggcggat taccgtgcgc tccagcgcca tgccgatggc ggcggtgacg aagaaggcca
     1081 ccggcagtgc cgccagcggg tagagggcga ggtagccggg ggcgaatttc tggaaggcga
     1141 tctgcaccat gtaggtggtg taggcgccga gcatcagcat ctcgccgtgg gccatgttga
     1201 tcaccccgag caggccgaag gtgatggcca ggcccagggc ggccagcagc aggatcgagc
     1261 cgaggctcag gccgctgaag gcctggccga gcagctcgcc gaccagcagg cggcgcttga
     1321 cctggaccag gctggtctcg gcggcggtgc gtaccgcggc gtcgctctcc acaccttcgg
     1381 cgagcaggcc ttccaggcgg gtgcgggcca gtgggtcgcc gctttcgccg agcaggcgca
     1441 cggcgctcag gcgcacggcc gggtcggggt cgaccagttg caggttggcc agggccagcg
     1501 ccagggcggc gcgcacggcc tcgtcctgtt cggcggccac ctgggcgttg agcagggaca
     1561 gctggctggg cttggccttc ttctgcagct cctgagccgc cgccagacgc tgggccggct
     1621 cggcggaaag cagctgctgc gcggcctggg cgttggccag caggccgcgc aggcggttgt
     1681 tcaggcgcag cttcttcggc gtgccgtcgg cgacgacctg gccttcggcg gcttgccagc
     1741 tgccgtcgac tttcaggaac gccgttttgc cggcaccgac gccgacgcga ccctgctgca
     1801 gggcatcgag cagcgcctgg cgggggggat cgggctgtgc ggcccagctc tcgaggagct
     1861 tggcctgctt ggccgggctg gcggcgacga agtcggcagc ctctccggca tgggcggtca
     1921 gcggcagcag cagcgccagt gacagcagga ttcggtaaag ggcagtgggc atacgaaagg
     1981 tccttgggta cgccgggaca agccctctcc catttatggg gagggccggg agaagggtct
     2041 gatctggcga accctcttcc cggccctcgc ccgcgaggcg ggagaggggg aaaccgtagc
     2101 ccggatggca tccgggctac gaactacgaa caccctctcc c
//
LOCUS       DATIHC010000356         1624 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33705, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000356 DATIHC010000000
VERSION     DATIHC010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1624
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33705"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1466
                     /locus_tag="VLF16_05750"
     CDS             <1..1466
                     /locus_tag="VLF16_05750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HSX70417.1"
                     /translation="LEPSGKPGQVLVPAWRHAIVNFDHPLLRQGLRILDTPGLNALGS
                     EPELTLSMLPSAQAIIFLLAADTGVTASDMAIWKEHIRQLDEDTQASLFAVLNKVDVL
                     WDDLAGEEFVNKAIGLVQNTAAKQLGIPGSSVLPLSAKQALIAKVRSDEELLERSRLA
                     DLERLLCERIVAQKERLLEERVVNQVLALVNNSQHVLSLRLEKVREQQNLLNGHQHDN
                     GQLLFELTAKTKQDHALHHKRLLGLKTNQRLLKRQGDLLRAAVRPERLEEHLTQARRG
                     LTGSWTTLGINHAIVHFFKSVEHDLGNLAHEAEMANKMVSAIYRRHNEENPLHGVDAP
                     QFNSQRYLRELKQLRTKADHFRLNLKTLLTEQRSLTRRFFATLVQEVIGLHQRLRAEA
                     EQWSGEALMPLMQHTLEHKQMLETHMLRLKSLAQETQQARQRGQQLAGYCTQLEGQLT
                     QANEMLRALRRPAPIQRQGKVVTLPAAPRQQSAADPA"
BASE COUNT          302 a          602 c          500 g          220 t
ORIGIN      
        1 tgctcgagcc gtccggcaag cccggccagg tgctggtgcc ggcctggcgc cacgccatcg
       61 tcaacttcga tcacccgctg ctgcgccagg gcctgcgcat cctcgacacg cccggcctca
      121 acgcgctcgg cagtgagccg gaactgaccc tgtcgatgct gcccagcgcc caggcgatca
      181 tcttcctgct ggcggccgac accggcgtga cggccagcga catggccatc tggaaggaac
      241 acatccgcca gctcgacgag gacacccagg ccagcctgtt cgccgtgctc aacaaggtcg
      301 acgtgctgtg ggatgacctg gccggcgagg aattcgtcaa caaggccatc ggcctggtgc
      361 agaacaccgc ggccaagcag ctcggcatcc ccggttccag cgtgctgccg ctgtcggcca
      421 agcaggcgct gatcgccaag gtgcgcagcg acgaggagct gctcgagcgc agccgcctgg
      481 ccgacctgga gcgcttgctc tgcgagcgca tcgtcgcgca gaaggagcgc ctgctcgagg
      541 agcgcgtggt caatcaggtg ctggcgctgg tcaacaacag ccagcacgta ctcagcctgc
      601 gcctggagaa ggtgcgcgag cagcagaacc tgctcaacgg ccatcagcac gacaacggcc
      661 agctgctgtt cgagctgacc gccaagacca agcaggacca cgccctgcac cacaagcgcc
      721 tgctcggcct gaagaccaac cagcgcctgc tcaagcgcca gggcgacctg ctgcgcgcgg
      781 ccgtgcgccc ggagcgcctg gaggagcacc tgacccaggc ccgccgcggg ctgaccggca
      841 gctggaccac cctgggcatc aaccacgcca tcgtgcattt cttcaagagc gtggagcacg
      901 acctcggcaa cctggcccac gaggccgaga tggccaacaa gatggtctcc gccatctacc
      961 gccggcacaa cgaggaaaac ccgctgcacg gcgtggacgc tccgcagttc aacagccagc
     1021 gctacctgcg cgaactgaaa cagctgcgca ccaaggccga ccatttccgc ctcaacctga
     1081 agaccctgct caccgagcag cgcagcctaa cccgccgctt cttcgccacc ctggtgcagg
     1141 aagtcatcgg cctgcaccag cgcctgcgcg ccgaggctga acaatggtcc ggcgaggcgc
     1201 tgatgccgct gatgcagcac accctcgagc acaagcagat gctcgagacc cacatgctgc
     1261 gcctcaagtc cctggcccag gagacccagc aggcgcgcca gcgcggccag cagctggccg
     1321 gctactgcac ccagctggaa ggccagctga cccaggccaa cgaaatgctc cgcgcgctgc
     1381 gccggccggc gccgatccag cgccagggca aggtcgtcac cctgcccgcc gcaccgcgcc
     1441 agcagagcgc cgccgacccc gcctaaagcc cctgaattca gggacttgag cacggccccc
     1501 gcgcttgctg ccgggggccg tgctctttag actgctgcac attcctggat cgagagcagg
     1561 gtcgatgccg actgtttttc ccgccgactc cgtaggtttg gtcgtgccgc aggtggcccg
     1621 cttc
//
LOCUS       DATIHC010000357         2087 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_7968, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000357 DATIHC010000000
VERSION     DATIHC010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2087
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7968"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..532
                     /locus_tag="VLF16_05755"
     CDS             <1..532
                     /locus_tag="VLF16_05755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003431320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HSX70418.1"
                     /translation="GRTDVPGLYAIGETSFTGLHGANRMASNSLLECFVYARSAVEDI
                     LAHLDQVATPQSLPAWDASQVTDSDEDVIIAHNWDELRRFMWDYVGIVRTNKRLQRAQ
                     HRVRLLLDEIDEFYSNYRVSRDLIELRNLALVAELMIDSAMRRQESRGLHYTLDYPEQ
                     LPEAHDTILVPPTFAG"
     gene            complement(501..953)
                     /locus_tag="VLF16_05760"
     CDS             complement(501..953)
                     /locus_tag="VLF16_05760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019647984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YgfX"
                     /protein_id="HSX70419.1"
                     /translation="MSSPSKHFECRWQASRLLLAVYLAALALALLTLSLIDLPHWAAA
                     LGVLACLLHAAWVLPRQILLSHPGAFTGLRRDEEGWQLFSRRHGWMPVQLRPDSLALP
                     MVVVLRFRLAGERRARGLCVPMDALPRDLHRRLRVRLKFSRRRWAAPE"
     gene            complement(937..1191)
                     /locus_tag="VLF16_05765"
     CDS             complement(937..1191)
                     /locus_tag="VLF16_05765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase assembly factor 2"
                     /protein_id="HSX70420.1"
                     /translation="MADATELNRLFWHSRRGMLELDVLLVPFVKEVYPSLDAEDQARY
                     RKLLECEDQDMFGWFMQRGEPEDADLRRMVRMILDRVQPK"
     gene            1311..>2087
                     /locus_tag="VLF16_05770"
     CDS             1311..>2087
                     /locus_tag="VLF16_05770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003282110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein YgfZ"
                     /protein_id="HSX70421.1"
                     /translation="MADSAFFTLLSHEALLAVRGADAAKFLQGQLTCNLNYLDEHTSS
                     LGARCTPKGRMTSSFRIVRDGDGYLLAMAAELLEAQLADLKKYAVFSKSALADESAPW
                     VRFGLSGGDGALLALGLDLPQQADAVTRANGLTAIRLPGGRAELWAPAEQAESLQTRL
                     RAQLREAPLDDWLLGQVRAGIGQVFGATRELFIPQMINLQAVGGVSFKKGCYTGQEIV
                     ARMQYLGKLKRRLQRLSLAQGEVPEPGVELFSPVHGSSVGE"
BASE COUNT          360 a          767 c          663 g          297 t
ORIGIN      
        1 cggccgcacc gacgtgccgg gcctctacgc catcggcgaa accagcttca ccggcctgca
       61 cggcgccaac cgcatggcca gcaattcgct gctggagtgc ttcgtctacg cccgctctgc
      121 ggtcgaggac atcctcgcgc acctggatca ggtggcgacc ccgcagagcc tgccggcctg
      181 ggacgcgagc caggtgaccg actcggacga ggacgtgatc atcgcccaca actgggacga
      241 gttgcggcgc ttcatgtggg actacgtcgg catcgtgcgt accaacaagc gcctgcagcg
      301 cgcccagcac cgggtgcgcc tgctgctgga cgagatcgac gagttctact ccaactaccg
      361 ggtcagccgc gacctgatcg agctgcgcaa cctcgcgctg gtcgccgagc tgatgatcga
      421 ctcggcgatg cgccgccagg agagccgggg cctgcattac accctggact atcccgagca
      481 gctgcccgag gcgcacgaca ctattctggt gccgcccacc ttcgccggct gaacttcagg
      541 cgcacccgca ggcgccggtg caggtctcgc ggcaacgcat ccatgggcac acacaggccg
      601 cgagcacgac gctcaccggc caggcgaaag cgcaacacca cgaccatcgg tagcgccagg
      661 ctgtccggcc gcagctgcac cggcatccag ccgtggcgcc gactgaacag ctgccagccc
      721 tcctcgtccc ggcgcagacc ggtgaaggca ccgggatggc tcaacagtat ctgccgcggc
      781 aatacccagg cggcatgcag cagacaggca agcacgccga gcgcggcagc ccagtgcggc
      841 agatcgatga gcgacagggt cagcagcgcc agggccagcg ccgccaggta gaccgccagc
      901 agcaggcgcg aggcctgcca gcggcattcg aagtgcttac ttgggctgga cacgatccag
      961 gatcatgcga accatgcggc gcagatcggc gtcttccggc tcgccgcgct gcatgaacca
     1021 gccgaacatg tcctggtcct cgcattccag cagcttgcgg tagcgcgcct ggtcctcggc
     1081 atccaggctg ggataaacct ctttgacgaa gggcaccagc agcacgtcca gctccagcat
     1141 gccgcggcgg ctgtgccaga agagtcggtt cagttcggta gcgtcggcca tgcagcggct
     1201 cctgtactaa aggcgcgcag tatagcggcg cggcgcgcgc tcggcacccg ctgacaaggc
     1261 gccgggcggc ctctatgatg acgccctgac tttttgacca gcgagcgccc atggccgact
     1321 ccgccttctt cacccttctg agccacgaag ccctgctcgc cgtgcgcggc gccgatgccg
     1381 ccaagttcct ccagggccag ctcacctgca acctcaacta cctcgacgag cacacctcca
     1441 gcctcggcgc gcgctgcacg cccaagggcc gcatgacgtc cagcttccgc atcgtcaggg
     1501 acggcgacgg ctacctcctg gccatggccg ccgagctatt ggaggcgcag ctggcggatc
     1561 tgaagaaata cgcggtgttc tccaaatcgg ccctcgccga cgaatccgcc ccctgggtgc
     1621 gcttcggcct gagcggcggc gacggcgccc tgctcgccct gggcctggac ctgccccagc
     1681 aagccgatgc agtcacccgc gccaacggcc tgaccgccat ccgcctgccc ggcggccgcg
     1741 ccgaactctg ggccccggcc gagcaggccg agagcctgca gacccgcctg cgcgcccagc
     1801 tgcgcgaggc gccactcgac gactggctgc tcggccaggt ccgcgccggc atcggccagg
     1861 tgttcggcgc cacccgcgag ctgttcattc cacagatgat caacctgcag gcggtcggcg
     1921 gcgtcagctt caagaagggc tgctacaccg gccaggaaat cgtcgcgcgc atgcagtacc
     1981 tcggcaagct caagcgccgc ctgcagcgcc tgagcctcgc ccagggcgaa gtgccggagc
     2041 cgggcgtcga gctgttctcg cccgtgcatg gctccagtgt cggcgaa
//
LOCUS       DATIHC010000358         2686 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_40686, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000358 DATIHC010000000
VERSION     DATIHC010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2686
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40686"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1053)
                     /locus_tag="VLF16_05775"
     CDS             complement(<1..1053)
                     /locus_tag="VLF16_05775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009623009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1302 family protein"
                     /protein_id="HSX70422.1"
                     /translation="MNPMHFPWWQASLALAVGLAATPAGALNFQIGEIEGQLDSNLSV
                     GASWALRNPSEEQIIYRSGDDGRRNFEQGKTFSKIFKGIHDLELKYGDSGVFLRGKYW
                     YDFELKDESRGYKDIDDSNSKEGAKSAGAQLLDAFIYHNYLIGELPGAVRLGKQVVSW
                     GESTFIPGGINSINPVDVAAFRRPGAEVKEGLIPVNMFFLSQNLTDNLSAEGFYQLEW
                     DQTVVDNCGTFFSQTDVIAEGCDNLRNGPALDQNAAAQAALGPFGIQLTEEGVRVPRS
                     GDRDARDGGQWGMALRWFAPELNSEFAGYVMNYHSRQPYFSTTTGPNTTNLDFATQLC
                     ANLGIAGPGCAGFIGSA"
     gene            complement(1175..2191)
                     /locus_tag="VLF16_05780"
     CDS             complement(1175..2191)
                     /locus_tag="VLF16_05780"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSX70423.1"
                     /translation="MRHLTRMAAFTLLALTLGGCERLQNAVMDAEVKDKTDYTLTQDD
                     GGIRVILCGTGTPQINAPRGQACTLVSAGGQLFLFDAGENAMRNVENNHVPLAALTRV
                     FITHWHSDHFNGLGGLINHTWINGRKTPFEVYGPSGVDRVVKGLAMAYQEDVQFRHLH
                     ALPPVATALGFAESNEVSLASGQESLRLFDQGGVTVDAYRVDHHPVDPAYGYVLRYNG
                     KKVFISGDTRVSERYLAAMQDADLVVHEAINSQMIHLGSAALQRTGQQAKATQAVRVL
                     EYHADTLALAKLAEQAKVRHLVLTHLIPSPTNFISRRMFLSGMSERYSGEITLGEDAM
                     EIRL"
     gene            complement(2219..>2686)
                     /locus_tag="VLF16_05785"
     CDS             complement(2219..>2686)
                     /locus_tag="VLF16_05785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017001785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase"
                     /protein_id="HSX70424.1"
                     /translation="IIRGGHNIDPKQIEEALQSHPAVALVAAVGCPDAHAGEVPVAYV
                     QLTAGQQADSAELLDFASRQISERAAVPKRIEILDALPVTPVGKIFKPALQQREIARV
                     VRQEAAELGLTELPVEVVQDARRGLVAQISAGLRHDGLAQALGRYSFQIDWLN"
BASE COUNT          393 a          838 c          938 g          517 t
ORIGIN      
        1 ggcactgccg atgaagccgg cgcagcccgg cccggcgatg cccaggttgg cgcacagctg
       61 cgtggcgaaa tccaggttgg tggtgtttgg cccggtggtg gtgctgaagt acggctgacg
      121 actgtgataa ttcatgacgt agccggcgaa ctcgctgttc agctctgggg cgaaccagcg
      181 cagcgccatg ccccactgtc cgccatcgcg ggcgtcacgg tcgccgctgc gcggcacccg
      241 cacgccttct tcggtgagct ggatgccaaa cgggccgagc gcagcctggg cggcggcgtt
      301 ctggtcgagc gccgggccgt tgcgcaggtt gtcgcagccc tcggcgatca cgtctgtctg
      361 cgagaagaag gtgccgcagt tgtcgaccac cgtctggtcc cactccagct ggtagaaacc
      421 ttcggcggag aggttgtcgg tgaggttctg tgacaggaag aacatgttca ccgggatcag
      481 gccttccttg acctcggcgc ccgggcggcg gaaggcggca acatccaccg ggttgatgct
      541 gttgatgccg ccgggaatga acgtgctctc gccccaactc accacctgct tgccgaggcg
      601 taccgcgccg ggcagttcac cgatcaggta gttgtggtag atgaaggcgt cgagcagctg
      661 cgcgcccgca gacttggcgc cttccttgct gttgctgtcg tcgatgtcct tgtagccgcg
      721 gctctcatcc ttgagttcga agtcgtacca gtacttgccg cgcaggaaca cgccactgtc
      781 gccgtacttg agctccaggt cgtggatgcc cttgaagatc ttcgagaagg tcttgccctg
      841 ttcgaaattg cgccggccgt catcgccgct gcggtagatg atctgctctt cgctgggatt
      901 acgcagcgcc cagctggcgc cgaccgagag gttggagtcg agctggcctt cgatctcgcc
      961 gatctggaag ttcagcgcgc ccgcaggcgt cgcggcaagg ccgacggcga gggcaagact
     1021 ggcctgccac catgggaaat gcatggggtt cattgcgtga ctacctcttg ttcttgtggg
     1081 ttggtctgtt acgcgttttc ggttctacgg gcatgggcga gcccgtggcc ggcgccggag
     1141 cgccggccgg tcaaggcagg gttcgccgct ggggttagag gcggatttcc atcgcgtcct
     1201 cgccgagcgt gatctcgccc gagtagcgtt cggacatgcc gctgaggaac atcctgcggc
     1261 tgatgaagtt ggtcgggctg gggatcaggt gggtcagcac caggtggcgg accttggctt
     1321 gctcggccag cttggccagc gccagggtgt cggcgtggta ctccagcacg cgtacggcct
     1381 gggtggcctt ggcctgctgg ccggtgcgct gcagcgcggc cgagcccaga tggatcatct
     1441 ggctattgat cgcctcgtgg acgaccaggt cggcgtcctg catggccgcc aggtagcgtt
     1501 cgctgacgcg ggtatcgccg ctgatgaaca ccttcttgcc gttgtagcgc agcacgtagc
     1561 cgtaggccgg gtcgaccggg tggtgatcga cgcgataggc gtcgacggtg acgccgccct
     1621 ggtcgaacag gcgcagcgac tcctggccgg acgcgaggct cacttcgttg gattcggcaa
     1681 agcccagtgc ggtggctacc ggcggcaacg catgcaggtg acggaactgc acgtcttcct
     1741 ggtaggccat cgccaggccc ttgaccacgc gatcgacgcc actcgggccg tacacctcga
     1801 acggcgtttt gcggccgttg atccaggtgt ggttgatcag cccgccgagg ccgttgaagt
     1861 ggtccgagtg ccagtgggtg atgaacaccc gggtcagcgc cgccagcggc acatggttgt
     1921 tctccacgtt gcgcatggcg ttctcgccgg cgtcgaacag gaacagctgg ccgccggcgg
     1981 acaccagcgt gcaggcctgg ccgcgcgggg cgttgatctg cggtgtgccg gtgccgcaga
     2041 gaatcacgcg gatgccgccg tcgtcctggg tcagcgtgta gtcggtcttg tccttgacct
     2101 cggcgtccat gacggcgttc tgcaggcgtt cgcagccacc gagggtgagg gccagcagcg
     2161 tgaacgccgc cattcgggtc aggtgtcgca taggcattcc ttcttgttct tttcgtgttc
     2221 agttgagcca gtcgatctgg aagctgtagc ggcccagcgc ctgggccagg ccatcgtgcc
     2281 gcaggccggc ggaaatctgc gcgaccagac cacggcgggc gtcctgcacc acctccacgg
     2341 gcagctcagt gaggcccagc tcggcggcct cctggcgcac cacgcgggcg atctcgcgct
     2401 gctgcagggc cggcttgaag atcttgccca ccggggtgac cggcagcgcg tcgagaatct
     2461 cgatgcgctt gggtacggcc gcgcgctcgc tgatctggcg gctggcgaag tcgagcagtt
     2521 cggcgctgtc ggcctgctgc ccggcggtga gttgcacata ggccaccggc acctcgccgg
     2581 catgcgcatc ggggcagccg accgctgcca ccagcgccac cgccgggtgg ctctgcagcg
     2641 cctcttcgat ctgcttcggg tcgatgttgt ggccgccacg gatgat
//
LOCUS       DATIHC010000359         1550 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5803, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000359 DATIHC010000000
VERSION     DATIHC010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1550
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5803"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            52..>1550
                     /gene="typA"
                     /locus_tag="VLF16_05790"
     CDS             52..>1550
                     /gene="typA"
                     /locus_tag="VLF16_05790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HSX70425.1"
                     /translation="MIEKLRNIAIIAHVDHGKTTLVDKLLKLSGTLDRKEAESERVMD
                     SNDQEKERGITILAKNTAIKWNGFNINIVDTPGHADFGGEVERVMSMVDSVLLVVDAQ
                     DGPMPQTRFVTQKAFKAGLRPIVVVNKVDRPGARPDWVIDQIFDLFDNLGATDEQLDF
                     PIVYASALNGIAGLDHEKMDDNMDALFQAIIDHVPAPQVDVDGPFQMQISQLDYNSFL
                     GVIGIGRIARGRIKANTPVVAISDDGSKRNGRVLKIMGHSGLQRVEVADAEAGDIVCV
                     SGMEELFISDTLCDPQHIEARPPLTVDQPTVSMTFQVNDSPFAGKEGKFVTSRNIKDR
                     LDKELLHNVALRVEAGESAEKFKVSGRGELHLSVLIETMRREGFEMAVGRPEVVIIEK
                     DGEKQEPYENVTIDIEEQHQGSVMEQMGLRKGDLTNMVPDGKGRVRLEYTIPARGLIG
                     FRNNFLTLTSGSGILTSTFSHYGVIKAGEVSNRQNGVLVSMATGTALTYS"
BASE COUNT          328 a          511 c          467 g          244 t
ORIGIN      
        1 cgcgtagagt gcgcgaccac tggtttcaga atccttaatc gagacgacat cgtgatcgaa
       61 aaactgcgca acatcgccat catcgcccac gtcgaccatg gcaagaccac cctggtagac
      121 aaactgctga agctctccgg caccctcgat cgcaaagaag cggaatccga gcgcgtgatg
      181 gactccaacg accaggaaaa agagcgcggc atcaccatcc tggcgaagaa caccgccatc
      241 aagtggaacg gcttcaacat caacatcgtc gacacccccg gccacgccga cttcggcggt
      301 gaggtagagc gcgtgatgtc gatggtcgac tccgtgctgc tggtggtcga cgcccaggac
      361 ggccccatgc cgcagacccg tttcgtgacc cagaaggcgt tcaaggccgg cctgcgtccg
      421 atcgtcgtgg tcaacaaggt cgaccgcccg ggcgcccgtc cggactgggt catcgaccag
      481 atcttcgacc tgttcgacaa cctcggcgcc accgacgagc agctcgactt cccgatcgtc
      541 tacgccagcg ccctgaacgg catcgccggt ctggaccacg agaagatgga cgacaacatg
      601 gacgccctgt tccaggccat catcgaccac gtaccggcgc cgcaggttga cgtcgacggt
      661 ccattccaga tgcagatctc ccagctggac tacaacagct tcctcggcgt gatcggcatc
      721 ggtcgtatcg cccgcggccg catcaaggcc aacaccccgg tggtggcgat cagcgacgat
      781 ggcagcaagc gcaatggccg cgtgctgaag atcatgggcc actccggcct gcagcgcgtc
      841 gaagtggccg acgccgaagc cggcgacatc gtctgcgtgt cgggcatgga agagctgttc
      901 atctccgaca ccctgtgcga cccgcagcac atcgaggcgc gtccgccgct gaccgtcgac
      961 cagccgaccg tgagcatgac cttccaggtc aacgactcgc cgttcgccgg caaggaaggc
     1021 aagttcgtca ccagccgcaa catcaaggac cgtctggaca aggagctgct gcacaacgtg
     1081 gcgctgcgcg tcgaggccgg tgagtccgcc gagaagttca aggtttccgg tcgtggcgag
     1141 ctgcacctgt cggtcctgat cgaaaccatg cgccgcgaag gcttcgagat ggccgtgggc
     1201 cgtccggaag tggtgatcat cgagaaggac ggcgagaagc aggagccgta cgagaacgtc
     1261 accatcgaca tcgaagagca gcaccagggc tcggtgatgg agcagatggg tctgcgcaag
     1321 ggcgacctga ccaacatggt tcccgatggc aagggccgcg tgcgcctgga atacaccatc
     1381 ccggcgcgtg gcctgatcgg cttccgtaac aacttcctga ccctgacctc gggcagcggc
     1441 atcctgacct cgaccttcag ccactacggc gtgatcaagg ccggtgaagt cagcaaccgt
     1501 cagaacggcg tgctggtctc catggccacc ggtaccgcgc tgacctactc
//
LOCUS       DATIHC010000360         3034 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37851, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000360 DATIHC010000000
VERSION     DATIHC010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3034
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37851"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1114..2100)
                     /gene="argR"
                     /locus_tag="VLF16_05795"
     CDS             complement(1114..2100)
                     /gene="argR"
                     /locus_tag="VLF16_05795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004416901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HSX70426.1"
                     /translation="MTATAHCIGFLIWPETRPMTLALAEEALRVAQRVHPEVSYELRF
                     LQAEAPVDGAWQMPGEPWGGRLEGCHKLFLLADEPPAQVAPALAQALKQLARGGMAIG
                     GLSAGVYPLAQLGLLDGYRAAVHWRWQDDFTERFPKVIATSHLFDWDRDRLTSCGGLA
                     VLDLLLAVLARDHGAELAGAVSEELVVERIREGGERQRIPLQNRIGSSHPKLTQAVLL
                     MEANIEEPLTTDEIAQHVCVSRRQLERIFKQYLNRVPSQYYLELRLNKARQLLMQTSK
                     SIIQIGLSCGFSSGPHFSSAYRNFFGATPREDRNQRRSASPFEIAPTSVERG"
     gene            complement(2204..2968)
                     /gene="aotP"
                     /locus_tag="VLF16_05800"
     CDS             complement(2204..2968)
                     /gene="aotP"
                     /locus_tag="VLF16_05800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine/ornithine transport ATP-binding protein
                     AotP"
                     /protein_id="HSX70427.1"
                     /translation="MYKLEVQDLHKRYGSHEVLKGVSLAAKAGDVISIIGSSGSGKST
                     FLRCINMLEQPHGGKILLNGEELKLVANKDGALKAADAKQLQRMRSRLSMVFQHFNLW
                     SHMSALENVIEAPVHVLGVPKKEAIEKAEHYLAKVGVAHRKDAYPAHMSGGEQQRVAI
                     ARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAQEGRTMVVVTHEMGFAREVSNQ
                     LIFLHKGLVEETGCPKEVLANPQSERLKQFLSGSLK"
BASE COUNT          514 a         1001 c          988 g          531 t
ORIGIN      
        1 tttaaacgct gcgtggggga tcggggtatt tcgctgcccc agattgccgg cccgcattca
       61 gtcgcctgac gcaacacttt tctcagcacc gggctacaga ttgcgccctg cacggcgcct
      121 cacttttcct tgtttgcgca aagaaagtaa gcaaaagaaa gcgcaccccg gcatccgggt
      181 ccggcctacg gccagacttc cctccttccg gtgccgctcc atggcccttt aagcggggac
      241 gcctggtcct ctcgccgcat ccctgcggct cgtcccccta cgcaacacct ccacccggcc
      301 tcctgacgag actcgggctc cgagttactt ggcagcgggc aacccggatg tagggtgcgc
      361 tgtacgcacc atgacaaatc cttcggtgcg cgcggcgcac cctacgggct cgaacctgat
      421 cgaccgctgc gcaacacctc cactcggcct cctgacgggc ctcgggcccc gagttgcctg
      481 gcagtgggca gcccggatgt agggtgcgct gtgcgcgcca tggcaattcc atcggtgcgc
      541 tcggcgcacc ctacgggctc gagcctgatc gaccgctgcg caacacctcc actcgacctg
      601 ctgacgggga ctcgggctcc gagttgcctg ggagttcttt ttccgcgcgg tttcagacgt
      661 agggcggcct cgccgaaggc agcccgccat gggagaacac acgtaccttc ggctggcgcc
      721 ctacacaccg aacgtccagg cgacaccaac gccccttagg agggtgagtg gaatcgttgt
      781 gtagaggggt gagccgcagg gatgcggcga aaggactagg cgtccccgct taaaaggcca
      841 tggacggccc ttgtaagccg accctcggag caatgatgga acgcaacgta gcgaagcgga
      901 gtaacagcca taggctggcc cgaagggcga gcgaagcgag tgacgaaccc ggagcgaagc
      961 gtcgggccgg atggcggggc aagccctttt ggttactttt tgcggggccg gccatccggc
     1021 gaccgccaaa agggacccgc ccagcagagc ggaaccaatg cccgcagcca acacaaaaaa
     1081 tagcagcggc acgaagcccc aaaaacgaat cggttaccca cgctcgactg aagtcggcgc
     1141 gatctcgaac ggactggcac tgcgccgctg gttgcgatcc tctcgcggcg tcgcgccgaa
     1201 gaagttgcgg taagcactcg agaaatgcgg ccccgaagaa aacccgcagg acaggccgat
     1261 ctggatgatc gacttgctgg tctgcatcag cagctggcgc gccttgttca ggcgcagctc
     1321 caggtagtac tggctcggca cgcgattgag gtactgcttg aagatccgct ccagctggcg
     1381 ccgcgacacg cacacgtgct gggcgatctc gtcggtggtc agcggctcct cgatgttcgc
     1441 ctccatcagc agcaccgcct gggtcagctt gggatggctg gagccgatgc gattctgcag
     1501 cgggatgcgc tggcgctcgc cgccctcgcg gatgcgttcg accaccagct cctcgctcac
     1561 cgcaccggcc agctcggcgc cgtggtcgcg ggccagcacg gccagcagca ggtcgagcac
     1621 ggccaggccg ccgcaggagg tcagacggtc gcgatcccag tcgaacaggt gactggtggc
     1681 gatgaccttg gggaagcgct cggtgaagtc gtcctgccag cgccagtgca cggcggcgcg
     1741 gtagccgtcg agcaggccga gctgggcgag cgggtagaca ccggcggaca gcccgccgat
     1801 ggccatgccg ccgcgggcca gctgcttgag cgcctgggcc aatgccgggg cgacctgggc
     1861 cggcggctcg tcggccagca ggaacagctt gtggcagccc tccagccgcc cgccccaggg
     1921 ctcgccgggc atctgccagg cgccgtccac cggcgcctcg gcctggagaa aacgcagttc
     1981 gtaggagact tccgggtgga cacgctgcgc cacgcgcagg gcttcctcgg ccagggccag
     2041 ggtcatgggc ctggtttccg gccagatcag gaaaccgatg cagtgggcag tagctgtcat
     2101 ggggggcagt ttagtgtgct gtcacgaaaa taactgttca tttctgatgg cgtctctcgc
     2161 gccatctcgc agggtggctc gcggtcaggc cgccgccgcg ggcctacttt aggctgccgg
     2221 acaggaactg cttgagacgc tcggattgcg gattggccag cacctctttc gggcaaccgg
     2281 tttcttccac cagccccttg tgcaggaaga tcagttggtt cgacacctcg cgggcgaagc
     2341 ccatctcgtg ggtcaccacc accatggtgc ggccttcctg ggccaggtcc tgcatcacct
     2401 tgagcacttc gccgaccagc tccgggtcga gggccgaggt cggctcgtcg aacagcatga
     2461 cctccggctc catggccagg gcgcgggcga tggccacgcg ctgctgctcg ccgccggaca
     2521 tatgcgccgg gtacgcatct ttcctgtgcg ccacgccgac cttggccagg tagtgctcgg
     2581 ccttctcgat ggcttccttt ttcggcacgc cgagcacgtg caccggcgcc tcgatgacgt
     2641 tctccagcgc gctcatgtgc gaccacaggt tgaagtgctg gaacaccatg gacaggcgcg
     2701 aacgcatgcg ctgcagctgc ttggcgtcgg cggccttgag cgcgccgtcc ttgttggcca
     2761 ccagcttgag ctcttcgccg ttgagcagga tcttgccgcc gtggggctgc tcgagcatgt
     2821 tgatgcagcg caggaaggtg ctcttgcccg agccgctcga gccgatgatg ctgatcacgt
     2881 cgcccgcctt ggccgccagg gaaacgccct tcagcacttc gtggctgccg tagcgcttgt
     2941 gcagatcctg aacttcgagt ttgtacatgg ttggattctc gtgtggctca gtcgctcagc
     3001 aggcgaccct gacgaatggg gtgacgatcg gctc
//
LOCUS       DATIHC010000361         4005 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5819, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000361 DATIHC010000000
VERSION     DATIHC010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4005)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4005
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5819"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2475
                     /gene="clpB"
                     /locus_tag="VLF16_05805"
     CDS             <1..2475
                     /gene="clpB"
                     /locus_tag="VLF16_05805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HSX70428.1"
                     /translation="PLHLLQALLEQQGGSIKPLLMQVGFDINSLRQALTKELDALPKI
                     QNPTGDVNLSQDLARLLNQADRLAQQKGDQFISSELVLLAAMDENTKLGKLLLGQGVS
                     KKALENAIANLRGGQAVNDPNVEESRQALDKYCVDLTKRAEDGKLDPVIGRDDEIRRT
                     IQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRIVNGEVPDGLKDKRLLALDMGSLIAG
                     AKFRGEFEERLKAVLNELGKQEGRIILFIDELHTMVGAGKAEGAMDAGNMLKPALARG
                     ELDCVGATTLDEYRQYIEKDAALERRFQKVLVDEPSEEDTIAILRGLKERYEVHHGVT
                     ITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASRIRMEIDSKPEALDRLDRRLIQL
                     KIEREALKKEDDEAAKKRLEKLQDDIAKLEQEYADLEEIWKSEKAEVQGSAQIQQKIE
                     QAKADLEAARRKSDLQRMAELQYGVIPDLERSLQMVDQHGKSENQLLRSKVTDEEIAE
                     VVSKWTGIPVAKMLEGERDKLLRMEDELHRRVIGQHEAVVAVANAVRRSRAGLADPNR
                     PSGSFLFLGPTGVGKTELCKALAEFLFDTEDAMVRIDMSEFMEKHSVARLIGAPPGYV
                     GYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNVLLQVLEDGRLTDSQGRTVDFRNA
                     VVVMTSNLGSAQIQELVGDREAQRAAVMDAVSSHFRPEFVNRIDEVVVFEPLAREQIA
                     GIAEIQLARLRKRLAERDLSLELSAEAMDKLVSVGFDPVYGARPLKRAIQRWIENPLA
                     QQILGGTFLPGMAIQGRVEGEDIVFA"
     gene            complement(2524..2862)
                     /locus_tag="VLF16_05810"
     CDS             complement(2524..2862)
                     /locus_tag="VLF16_05810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004420111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HSX70429.1"
                     /translation="MDDRRQHSRHTTQLAIEVLDLHSGRRLGRIVDLSEEGFMLVSEH
                     PPEADSVWECRLVLDQPLDGIHEIRAGADCLWSRPGEAGHNGWCGFQIIHLADDQVAP
                     LALLLRHLQV"
     gene            complement(2863..>4005)
                     /locus_tag="VLF16_05815"
     CDS             complement(2863..>4005)
                     /locus_tag="VLF16_05815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010489706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1631 family protein"
                     /protein_id="HSX70430.1"
                     /translation="LDDDNLPHSCKTALSHLHTPYLKVALLDKALFTQHHHPARRLLN
                     TMAQAGVLYGGEGEERGLLAKMHWVVERVIQGFTGDLTLFDSLLEEFNEFVATLRHKV
                     ELREKRAVEAAKGRDRLLGARQQAVEVIHGVLRDRQLPSVIHNFLELTWADVLVFVLL
                     RHGERSAEWQRAGEVAEQLAWSASPLDADGRSRLQTIRVMLLDELRKGLELLGGYHED
                     GIRRLLQDIVACQHAVQGQQPQLAAQIKTQLPESPLGAMLGEDAALAEPIRRDAPQSP
                     RVQALIRELQRLEFGTWFEFVQGSATLTLKLSWFSPTTHNYMFVDHSGQRVAVKPIRQ
                     LASEMEQGLARIVTPERSTPLVDRALGAIYRVLQRFTGRATEVEGA"
BASE COUNT          700 a         1289 c         1416 g          600 t
ORIGIN      
        1 cccctgcacc tgctgcaggc gctgctggaa cagcagggtg gctcgatcaa gccgctgctg
       61 atgcaggtgg gcttcgatat caacagtctg cgccaggccc tgaccaagga gctggacgcc
      121 ctgcccaaaa tccagaaccc caccggcgac gtgaacctgt cgcaggatct ggcgcgcctg
      181 ctcaaccagg ccgaccgcct ggcccagcaa aagggggacc agttcatctc cagcgagctg
      241 gtgctgctcg ccgccatgga cgagaacacc aagctcggca agctgctgct ggggcagggc
      301 gtgtcgaaga aggcgctgga gaatgccatc gccaacctgc gcggcggtca ggcggtcaac
      361 gaccccaatg tcgaggagtc gcgccaggcg ctggacaagt actgcgtcga cctgaccaag
      421 cgcgccgagg acggcaagct cgacccggtg atcggccgcg acgacgagat ccgtcgcacc
      481 atccaggtgt tgcagcgccg caccaagaac aacccggtgc tgatcggcga acccggtgtc
      541 ggcaagaccg ccatcgccga aggtctggcc cagcgcatcg tcaacggcga ggtgccggac
      601 gggctcaaag acaagcgcct gctggcgctg gacatgggct cgctgattgc cggcgccaag
      661 ttccgcggcg agttcgagga gcgcctgaag gcggtgctca acgagctggg caagcaggaa
      721 ggccgcatca tcctgttcat cgacgaactg cacaccatgg ttggcgccgg caaggccgag
      781 ggtgcgatgg acgccggcaa tatgctcaag ccggccctgg cccgcggcga gctcgactgc
      841 gtcggcgcca ctaccctcga cgagtaccgc cagtacatcg agaaggacgc cgcgctggag
      901 cgtcgcttcc agaaggtgct ggtggacgag ccctccgagg aggacaccat cgccatcctg
      961 cgcggcctca aggagcgtta tgaggtgcac cacggagtga ccatcaccga tggcgccatc
     1021 atcgcggccg ccaagctcag ccatcgctac atcaccgacc gccagctgcc ggacaaggcc
     1081 atcgacctga tcgacgaggc cgccagtcgc atccgcatgg agatcgactc caagccggag
     1141 gcgctggatc gcctggaccg tcgcctgatc cagctgaaga tcgagcgtga ggcgttgaag
     1201 aaggaagacg acgaggcggc caagaagcgc ctggagaagc tgcaggacga catcgccaag
     1261 ctggagcagg aatacgccga cctggaggag atctggaagt cggaaaaggc cgaggtgcag
     1321 ggctcggcgc agatccagca gaagatcgag caggccaagg ccgacctcga ggccgcgcga
     1381 cgcaagagcg acctgcagcg catggccgag ctgcagtacg gggtgatccc ggatctggag
     1441 cgcagcctgc agatggtcga ccagcacggc aagagcgaga accagctgct gcgcagcaag
     1501 gtcaccgacg aggagatcgc cgaggtggtg tccaagtgga ccggcatccc ggtggcgaag
     1561 atgctcgagg gcgagcgcga caaactgctg cgcatggagg acgagctgca ccggcgcgtc
     1621 attggccagc acgaggcggt ggtggccgtg gccaatgccg tgcgccgttc gcgtgccggc
     1681 ctggccgacc cgaatcgccc cagcggctcg ttcctcttcc tcggcccgac cggggtgggc
     1741 aagaccgagc tgtgcaaggc gctggccgag ttcctcttcg acaccgagga cgccatggtg
     1801 cgcatcgaca tgtcggagtt catggagaag cactcggtgg cccgcctgat cggtgcgccg
     1861 cccggctatg tcggttacga ggagggcggt tacctgaccg aggcggtgcg gcgcaaacct
     1921 tactcggtga tcctcctgga cgaggtggag aaggcccacc cggacgtgtt caacgtgctg
     1981 ctgcaggtgc tggaggacgg gcgcctgacc gacagccagg gccgcaccgt ggacttccgc
     2041 aatgcggtgg tggtgatgac ctccaacctc ggttcggcac agatccagga gctggtcggt
     2101 gatcgcgagg cgcagcgcgc ggcggtgatg gatgcggtga gcagccactt ccgtccggag
     2161 ttcgtcaacc gcatcgacga ggtcgtggtg ttcgagccgc tggcgcgcga gcagatcgcc
     2221 ggcatcgccg aaatccagct ggcgcgcctg cgcaagcgcc tggccgagcg cgacctgagc
     2281 ctggagctgt cggccgaggc gatggacaag ctggtatcgg tgggcttcga cccggtctac
     2341 ggcgcgcggc ctttgaagcg ggcgatccag cgctggatcg agaacccgct ggcgcagcag
     2401 atcctgggcg gcaccttcct gcccggcatg gccattcagg gacgggtcga gggcgaggac
     2461 atcgtcttcg cctgagcggg acgagcatgc gaaaagcccc gggagaccgg ggcttttttg
     2521 tttttagacc tgcaggtggc gcagcagcag ggccagcgga gcgacctgat cgtcggctaa
     2581 gtggatgatc tggaagccgc accagccgtt gtggccggcc tcgccgggac ggctccacag
     2641 gcagtcggcg ccggcgcgga tctcatggat gccgtccagc ggctggtcca gcaccaggcg
     2701 gcattcccag accgagtcgg cctcgggcgg gtgctcgctg accagcatga agccctcctc
     2761 ggagaggtcg acgatgcggc ccaggcggcg gccgctgtgc aggtccagca cttcgatggc
     2821 cagctgcgtg gtgtggcggc tgtgctgacg acggtcgtcc attcaggctc cttcgacttc
     2881 ggtggcgcgc ccggtgaagc gctgcaggac ccggtagatg gcgcccaggg cgcgatcgac
     2941 caggggcgta ctgcgctccg gtgtgacaat gcgcgccagg ccctgttcca tctcgctggc
     3001 caactggcgg atcggcttga ccgccacacg ctgcccgctg tggtcgacga acatgtagtt
     3061 gtgggtggtc gggctgaacc aggacagctt gagggtgagg gtggcgctgc cctggacgaa
     3121 ctcgaaccag gtgccgaact ccagccgctg caactcccgg atcagtgcct ggacgcgcgg
     3181 cgactggggc gcgtcgcgcc tgatcggctc ggccagcgcc gcgtcctcgc cgagcatggc
     3241 gccgagcggg ctctccggca gctgggtctt gatctgcgcg gccagctgcg gctgctggcc
     3301 ttgtacggcg tgctggcagg cgacgatgtc ctgcagcagg cggcggatgc cgtcttcgtg
     3361 gtaaccaccg agcagctcca gccccttgcg cagctcgtcg agcagcatca cacggatggt
     3421 ctgcagacgg ctgcggccgt cggcgtccag cggcgaggcg ctccaggcca gctgctccgc
     3481 cacctcgccg gcgcgttgcc actcggcgct gcgttcgccg tgccggagca ggacgaagac
     3541 cagcacatcg gcccaggtca gttcgaggaa gttgtggatc acgctgggca gctggcggtc
     3601 gcgcagcacg ccgtgaatca cctccaccgc ctgctggcgt gcgccgagca ggcggtcgcg
     3661 gcccttggcc gcctccaccg cgcgcttctc gcgcagctcg accttgtggc gcagagtggc
     3721 gacgaactcg ttgaactcct ccagcaggct gtcgaacagc gtgaggtcgc cggtgaagcc
     3781 ctggatcacc cgctcgacga cccagtgcat cttcgccagc aggccgcgct cctcgccctc
     3841 gccgccgtag agcacgccgg cctgggccat ggtgttgagc aggcgccggg cggggtggtg
     3901 gtgctgggtg aacagcgcct tgtccagcag cgccaccttg agatacggcg tatgcagatg
     3961 ggaaagggcg gtcttgcagc tgtgcggcag gttgtcgtcg tcgag
//
LOCUS       DATIHC010000362         1555 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_26210, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000362 DATIHC010000000
VERSION     DATIHC010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1555
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26210"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..717
                     /locus_tag="VLF16_05820"
     CDS             <1..717
                     /locus_tag="VLF16_05820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003242194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CheR family methyltransferase"
                     /protein_id="HSX70431.1"
                     /translation="VQLRQAQAQLDCPTISALQERILHDPKAFMQLLQFLTIPVSEMF
                     RDPSYFLALRQQVVPLLHTYPSLKVWVAGCSTGEEVYSLAILLREEGLLERTMIYATD
                     INPHSLEKAEQGIFALDHIRTYTENYQRSGGKGAFSDYYTAAYDRALFDKTLRDNVTF
                     ADHSLATDSVFAETQLISCRNVLIYFNRGLQDRALGLFHESLCHRGFLGLGSKESLDF
                     SGYAQQFEALVRPERIFRKR"
     gene            714..1328
                     /locus_tag="VLF16_05825"
     CDS             714..1328
                     /locus_tag="VLF16_05825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HSX70432.1"
                     /translation="MSRQPQIRLRGRMRAPLEAVVVGASAGGVEALMNLFDALPADYR
                     LPLVCMLHMPESGDNLLVELLARRVALPVKEAEDKERLHGGVLYVAPAGYHLSIETDR
                     SFSLSREEPRHFSRPSIDILFESAADAYGAGLAGALLTGANEDGAAGLLTIARAGGLT
                     LVQTPSDAQVRTMPEAALALLQPDFLLPIDAMRTLLAELDAPLC"
     gene            1322..>1555
                     /locus_tag="VLF16_05830"
     CDS             1322..>1555
                     /locus_tag="VLF16_05830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007954535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX70433.1"
                     /translation="MLRKIEAKLLIVDDLPENLLALHKLIQDDERTVYQAANADQALS
                     LLLEHEFALAILDVQMPGMNGFELAELMRGTEKT"
BASE COUNT          256 a          551 c          495 g          253 t
ORIGIN      
        1 gtccagctgc gccaggccca ggcgcagctg gactgcccga ccatctcggc gctacaggaa
       61 cgcatccttc atgaccccaa ggcgttcatg cagctgctgc agttcctcac catcccggtc
      121 agcgagatgt tccgcgaccc cagctacttc ctcgccctgc gccagcaggt ggtgccgctg
      181 ctgcacacct acccgtcgct gaaggtgtgg gtggccggct gcagcaccgg cgaagaggtg
      241 tattcgctgg ccatcctgct gcgcgaggag ggcctgctcg agcggaccat gatctacgcc
      301 accgacatca acccgcattc gctggagaag gccgagcagg gcatcttcgc cctcgaccac
      361 atccgcacct ataccgagaa ctaccagcgc tccggcggca agggcgcgtt ctccgactac
      421 tacaccgcgg cctacgaccg ggcgctgttc gacaagacgc tgcgcgacaa cgtgaccttc
      481 gccgaccaca gcctggccac cgacagcgtg ttcgccgaga cccagttgat ctcctgccgc
      541 aacgtgctga tctacttcaa ccgcggcctg caggaccggg ccctgggtct gttccacgag
      601 tcgctctgcc accgcggttt cctcggcctg ggcagcaagg agagcctcga cttctccggc
      661 tacgcccagc agttcgaggc gctggtgcgg ccggaacgga tcttccgcaa gcgatgagca
      721 ggcaaccgca gatccgcctg cgcggacgca tgcgtgcgcc gctggaggcc gtcgtggtcg
      781 gcgcctcggc gggcggcgtc gaggcgctga tgaacctgtt cgacgcgttg ccggcggact
      841 accgcctgcc gctggtgtgc atgctgcaca tgccggagag cggcgataac ctgctggtcg
      901 agctgctcgc ccggcgggtg gcgctgccgg tcaaggaggc cgaggacaag gagcgcctgc
      961 acggcggcgt gctctacgtg gcgccggcgg gttatcacct gtccatcgag acggaccgca
     1021 gcttctcgct cagccgcgag gaaccccgac acttttcccg gccctcgatc gacatcctct
     1081 tcgagtccgc cgccgatgcc tatggcgccg ggctggccgg cgcattgctg accggcgcca
     1141 acgaagacgg cgccgccggc ctgctgacca tcgcccgcgc gggcggcctg acgctggtac
     1201 aaacaccgtc cgacgcccag gtgcggacca tgccggaggc ggcgctggcg ctgttgcagc
     1261 cggactttct cctgcccatc gatgccatgc gcacgctgct ggccgaactg gatgcccccc
     1321 tatgttgagg aagatcgaag ccaagctgct gatcgtcgat gatctgccgg aaaacctgct
     1381 ggcgctgcac aagctcatcc aggacgacga gcgtactgtc taccaggccg ccaacgccga
     1441 ccaggcgctg tcgctgctgc tcgagcacga gttcgcgctg gccattctcg acgtgcagat
     1501 gcccggcatg aacggcttcg agctggccga gctgatgcgc ggcacggaga agacc
//
LOCUS       DATIHC010000363         1641 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10355, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000363 DATIHC010000000
VERSION     DATIHC010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1641
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10355"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..358)
                     /locus_tag="VLF16_05835"
     CDS             complement(<1..358)
                     /locus_tag="VLF16_05835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HSX70434.1"
                     /translation="MLPIFFAAMLFGLAFCASPGAVFSETLRRGLTGGFRPALLVQLG
                     SLIGDAVWALIGLTGLVLLLAQDSVRVPLTLACAAYLAWLGIQGLRDAWRPPVQEEAA
                     RQGRNAFGAGALLSLSN"
     gene            complement(477..950)
                     /locus_tag="VLF16_05840"
     CDS             complement(477..950)
                     /locus_tag="VLF16_05840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013713618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HSX70435.1"
                     /translation="MSQAIASQNSVSSLTGLLVPLADRTLLLPNVAVAELIPYRPPHV
                     TPGLPSWFLGQVAWRDLQLPLLSFEAASDGQPQIGPGVRVAVLNAMGGRDSVKFIALL
                     VQGIPRSMKVDGNLQRASGAVLAPLELDAVQLGEAVVKIPDLIGLEQKLADAGLI"
     gene            complement(980..>1641)
                     /locus_tag="VLF16_05845"
     CDS             complement(980..>1641)
                     /locus_tag="VLF16_05845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013789453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HSX70436.1"
                     /translation="EALLAEAQRPSRLELPAALAGTPLTAGEPAKQVWLLAASLGGPA
                     AVKEFLDALPGGLPIGFIYAQHIDAAFETALPQAVGRHSQWHVNPARNGDAVRCGEVV
                     VAPIANELGFAEDGVMQVADRGWPEPYSPSIDQMMLNLAQQFGAHCGVIAFSGMGSDG
                     SAAAAYVRRQGGVIWTQKADSCASPSMPDSLREGGYSVLSGDPRELAAALVNHLAEQC
                     Q"
BASE COUNT          258 a          574 c          590 g          219 t
ORIGIN      
        1 ggttcgacaa cgacagcagc gcgcccgcgc cgaaggcgtt gcgcccctgc cgggctgcct
       61 cctcctgcac cggcggccgc caggcatcgc gcaggccctg gatgccgagc caggccagat
      121 aggccgcgca ggccagcgtc agcggcacgc gcacgctgtc ctgcgccagc agcaggacca
      181 gcccggtcag gccgatcaat gcccagaccg catcgccgat cagcgagccc agctgcacca
      241 gcagcgccgg acgaaagccg ccggtcagac cgcgacgcag ggtttcgctg aacaccgcgc
      301 ccggagacgc gcagaacgcc aggccgaaca gcatggcggc gaaaaagatg ggcagcatgg
      361 gatatctctg aattgcgccg gcgcggactc gccgaggcgt cttagcccga cgcagagggc
      421 tgatcgtgtc ggctcgaatg cggggtggcg ttcgagccgt gcggcgaaga tgagcttcag
      481 atcaggccgg catccgccag cttctgctcc aggccgatca ggtcggggat cttcaccacg
      541 gcttcgccga gctgcacggc gtccagctcc agcggggcca gcacggcgcc gctggcacgc
      601 tgcaggttgc cgtcgacctt catcgaacgc gggatgccct gcaccagcag ggcgatgaac
      661 ttgacgctgt cgcggccgcc catggcgttg agcacggcca cgcgcacgcc ggggccgatc
      721 tgcggctgcc cgtcggaggc ggcctcgaag gacagcagcg gcagctgcag gtcgcgccag
      781 gccacctgcc cgaggaacca ggacggcagg cccggcgtga catgcggcgg acggtagggg
      841 atcagctcgg ccaccgccac gttgggcagc agcagggtgc ggtcggccag cggcaccagc
      901 aggccggtga ggctgctgac actgttctgg ctggcgatgg cttggctcat ggcggctcct
      961 tgaaagactg ctggcgccgt tactggcact gctcggccag gtgattgacc agggcagcgg
     1021 ccagctcgcg cgggtcgccg ctgaggacac tgtagccgcc ctcgcgcagg ctgtcgggca
     1081 tgctcgggct ggcgcagctg tcggccttct gggtccagat caccccgccc tggcgacgca
     1141 cgtaggcggc agccgcgctg ccgtcgctgc ccatgccact gaaggcgatc acgccgcagt
     1201 gggcgccgaa ctgctgggcc aggttgagca tcatctggtc gatggacggg ctgtagggct
     1261 cgggccagcc gcggtcggcc acctgcatga cgccgtcttc ggcgaagccg agctcgttgg
     1321 cgatcggcgc caccaccact tcgccgcaac gcaccgcatc gccattgcgc gccgggttga
     1381 cgtgccactg gctgtggcgg ccgacggcct ggggcagcgc cgtctcgaag gcggcatcga
     1441 tgtgctgggc gtagatgaaa ccgatcggca gaccgccggg cagcgcgtcg agaaattcct
     1501 tcaccgccgc cgggccgccg agggaggccg ccagcagcca gacctgcttg gctggctcac
     1561 cggccgtcag cggcgtgcca gccagcgcgg cgggcagctc caggcggctg ggacgctgcg
     1621 cctcggccag cagcgcttcc a
//
LOCUS       DATIHC010000364         1640 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12593, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000364 DATIHC010000000
VERSION     DATIHC010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1640
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12593"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1088)
                     /locus_tag="VLF16_05850"
     CDS             complement(<1..1088)
                     /locus_tag="VLF16_05850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016495418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbosone dehydrogenase family protein"
                     /protein_id="HSX70437.1"
                     /translation="MNRLQLLSAAALALACSACGEQAKLNVSDGTGPRPELPEPNETL
                     LPTVNIAPAKGWTEGGKPTAAGGLQVNAFAEGLDHPRWLHVLPNGDVLVAESNAPKTD
                     KPFSLKGWITSKVMKRAGARPPSADRITLLRDADNDGVAELREVFLDGLHSPFGMALV
                     GNDFYIANADALVRVPYSEGQTRIEATPQKVTDLPAGINHHWTKNVIASKDGQKLYVT
                     VGSNSNVGENGMAMEDGRAAIWEVDRASGQKRLFATGLRNPNGLAWEPHTGALWTAVN
                     ERDEIGSDLVPDYITSVRDGGFYGWPYSYFGQHVDERVEPPRPELVAKALVPDYALGP
                     HTASLGIAFGQDGALPNLRNGLFVGQHGS"
     gene            1240..>1640
                     /locus_tag="VLF16_05855"
     CDS             1240..>1640
                     /locus_tag="VLF16_05855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HSX70438.1"
                     /translation="MKLKRLMAALTFVAAGVSAASAVAAIDPALPTYEKTSGVSGNLS
                     SVGSDSLANLMTLWAEEYKKLYPNVNIQIQAAGSSTAPPALTEGTANIGPMSRAMKDN
                     ELQAFEEKYGYKPVEIPVAIDALAVFVHKDNP"
BASE COUNT          246 a          533 c          561 g          300 t
ORIGIN      
        1 gagccgtgct ggccgacgaa caggccgttg cgcaggttcg gcagcgcgcc gtcctggccg
       61 aaggcgatgc ccagcgaggc ggtgtgcggg cctaacgcat agtccggcac cagggccttg
      121 gccaccagtt cggggcgtgg cggctcgacg cgctcgtcga cgtgctggcc gaagtagctg
      181 tagggccagc cgtagaagcc gccgtcgcgc accgaagtga tgtagtccgg caccaggtcg
      241 ctgccgatct cgtcgcgctc gttgaccgcg gtccacaagg cgccggtgtg tggctcccag
      301 gccaggccgt tggggttgcg caggccggtg gcgaacaggc gtttctgccc gctggcgcgg
      361 tcgacctccc agatcgccgc gcggccgtct tccatcgcca tgccgttctc gccgacgttg
      421 ctgttggagc cgacggtgac gtagagcttc tgcccgtcct tgctggcgat gacgttcttg
      481 gtccagtggt ggttgatgcc ggccggcagg tcggtgacct tctgcggcgt ggcctcgatg
      541 cgggtctggc cctcgctgta gggcacgcgc accagggcgt cggcgttggc gatatagaag
      601 tcattgccga ccagggccat gccgaagggc gagtgcaggc cgtcgaggaa cacctcgcgc
      661 agctcggcga cgccgtcgtt gtccgcgtcg cgcagcaggg tgatgcggtc cgcgctcggt
      721 ggccgagcgc ccgcccgctt catcaccttg ctggtgatcc agcccttgag gctgaacggc
      781 ttgtcggtct tcggcgcgtt gctctcggcc accagcacgt cgccgttggg caggacgtgc
      841 agccagcgcg ggtgatcgag gccctcggcg aaggcgttga cctgcaggcc gccggccgcg
      901 gtcggcttgc cgccctcggt ccagcccttg gcaggggcga tgttgacggt gggcagcagg
      961 gtctcgttcg gttccggcag ctccgggcgc ggcccggtgc cgtcgctgac gttgagcttg
     1021 gcctgctcgc cgcaggcgct gcaggcgagc gccagggcgg cggcggacag cagttgcagt
     1081 cggttcatgg gcagtctccg tgagggccga aaggcgggga acatttttgg accgccatag
     1141 tggccattca tccaattgtc atattccatt catagagtgt tcatccgggc tgcagatact
     1201 tggccccgtt ccatccaacc cctctgctag gagcaaggca tgaaactcaa gcgtttgatg
     1261 gcggccctga cctttgtcgc cgctggcgta agcgccgcta gtgcggtggc tgctatcgac
     1321 ccggctctgc cgacctatga aaagacttcc ggtgtatcgg gcaacctgtc cagcgtcggt
     1381 tccgactccc tggccaacct gatgaccctg tgggccgagg aatacaagaa gctgtacccg
     1441 aacgtgaaca tccagatcca ggccgccggt tcctccaccg cgccgcccgc tctgaccgaa
     1501 ggtaccgcca acatcggccc gatgtcccgc gccatgaagg acaacgagct gcaggccttc
     1561 gaagagaagt atggctacaa gccggtcgaa atcccggttg ccatcgacgc cctggccgtg
     1621 ttcgtgcaca aggacaaccc
//
LOCUS       DATIHC010000365         2922 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_3346, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000365 DATIHC010000000
VERSION     DATIHC010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2922
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3346"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(32..1714)
                     /locus_tag="VLF16_05860"
     CDS             complement(32..1714)
                     /locus_tag="VLF16_05860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid--CoA ligase"
                     /protein_id="HSX70439.1"
                     /translation="MLKTRVIPPTENANQAPLLIKRLLLSGSRYEKTREIVYRDQMRY
                     SYATFNERVARLANVLSEAGVKAGDTVAVMDWDSHRYLECMFAIPMIGAVLHTINIRL
                     SADQILYTMNHAEDRFVLVNSEFVPLYKSIETQLTTVEKTLLLTDGPEKTAELPDLVG
                     EYESLLAAASTRYDFEDFDENSVATTFYTTGTTGNPKGVYFTHRQLVLHTLAEASVLG
                     SLDSVRLLGTDDVYMPITPMFHVHAWGIPYVATMMGVKQVYPGRYEPDMLCRLIREEK
                     VTFSHCVPTILQMMLNAPGAQGYDFGGLKVIIGGSALNRALYEASKARGIQLTAAYGM
                     SETCPLISCAHINEELKAGSEDERVTYRIKAGVPVPLVEAALMGPDGQLLPADGETQG
                     ELVLRAPWLTIGYFNEPQKSAELWEHGWLHTGDVATLDDFGYIDIRDRIKDVIKTGGE
                     WLSSLELEDLISRHPAVREVAVVGIPDPQWGERPFALLVLREGQNLDAKVLKEHLKPY
                     VEQGCINKWAIPSQIAVVTDIPKTSVGKLDKKRIRLDIAQWQAAGSAFLSTL"
     gene            1885..>2922
                     /locus_tag="VLF16_05865"
     CDS             1885..>2922
                     /locus_tag="VLF16_05865"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HSX70440.1"
                     /translation="MSDIVIVSGARTPMGGFQGSLSSVPAVELGAAAIREAVARAGIA
                     PDDVQEVIMGCVLPAGLKQGPARQASLNAGLPSATGCTTINKLCGSGMKAVMQAFDAL
                     KAGSNEVMVAGGMESMSNAPYIIEKARTGLRMGHGEIKDHMFFDGLEDARTGRLMGSF
                     AQETADKYGITREEMDAYAIESLKRAQAAIQSGELASEIVPVTVTSRKGEVVVKDDEQ
                     PLTANLDKIPGLKPAFKKDGTITAANASSISDGASALVLMTAEEAAKRGLKPLARIVA
                     HATQSQDPSEFTLAPIGAMSNLFKKTGWSKDDVDLYEINEAFAMVTMLAMREHGLDHA
                     KVNVYGGACAQG"
BASE COUNT          518 a          966 c          920 g          518 t
ORIGIN      
        1 gccaaaagcg ccccgccccc gccttcaggg ctcagagcgt agacagaaat gcactgcctg
       61 ccgcctgcca ctgggcgatg tccagacgaa ttcgtttctt gtccagctta cccacactgg
      121 ttttgggaat atcggtaaca accgcgatct ggctgggtat ggcccacttg ttgatgcagc
      181 cctgctcgac atacggcttg aggtgctcct tgagcacctt ggcatccagg ttctgcccct
      241 cgcgcagaac cagcaaggca aagggtcgct ctccccactg cgggtcggga atgccgacca
      301 ccgctacttc gcgtacggcc gggtggcgac tgatcaggtc ctccagttcc agggaagaca
      361 gccattcgcc cccggtcttg atcacgtcct tgatgcggtc gcggatatcg atgtagccga
      421 agtcgtccag ggtggcgacg tcgccggtgt gtagccagcc gtgctcccac agctcggcgc
      481 tcttctgcgg ctcgttgaag tagcctatgg tcagccaggg cgcgcgcagc accagctcgc
      541 cctgcgtctc gccgtcggct ggcagcagct gaccgtccgg tcccatcagc gcggcctcga
      601 ccagcggcac cggcacgccg gccttgatcc ggtaggtgac acgctcgtcc tcgctgccgg
      661 ccttgagctc ctcgttgatg tgcgcacagg agatcagcgg acaggtttcg gacatcccat
      721 aggcggctgt gagctggatg ccccgcgcct tcgacgcctc gtacagggcg cggttgagcg
      781 cgctgccacc gatgatcacc ttgaggccgc cgaagtcgta gccctgggct ccgggcgcat
      841 tgagcatcat ctgcaggatg gtcggcacgc agtgggagaa ggtcaccttc tcctcgcgga
      901 tcagccggca cagcatgtcc ggctcgtagc ggcccgggta gacctgcttg acccccatca
      961 tggtggcaac gtagggaatg ccccaggcgt gcacgtggaa catcggggtg atcggcatgt
     1021 acacgtcgtc ggtaccgagc aggcgcacgc tgtccaggct gcccagcacg ctggcctcgg
     1081 ccagggtgtg cagcaccagc tggcgatggg tgaagtacac gcccttcgga ttgccggtgg
     1141 taccggtggt gtagaaggtg gtggccaccg aattctcgtc gaagtcctcg aagtcgtagc
     1201 gggtgctcgc cgcggccagc aggctctcgt actcgcctac cagatcgggc agctcggcgg
     1261 ttttttccgg gccgtcggtg agcaggaggg tcttctccac cgtggtcagc tgggtctcga
     1321 tgctcttgta aagcggcacg aactcgctgt tgaccagcac gaagcggtcc tcggcgtggt
     1381 tcatggtgta gagaatctgg tcggcggaca ggcggatatt gatggtgtgc agcaccgcac
     1441 cgatcatcgg gatggcgaac atgcattcca ggtaccggtg gctgtcccag tccatcaccg
     1501 ccacggtgtc accggccttc acgcccgcct cgctcagcac attggccagg cgcgccacgc
     1561 gctcgttgaa ggtggcgtag ctgtagcgca tctggtcgcg gtagacaatc tcgcgggtct
     1621 tctcgtaacg gctgccggag agcagcaggc gcttgatcag cagcggagcc tggttggcgt
     1681 tttcggttgg cgggatgacg cgggtcttca gcatggcggt aacctgttct tggatttttt
     1741 cttcgccgcc aatctagagc cgctctggcc cggacttaat caacccaaag aatgattttc
     1801 gcgtgaccct ttggccactt ttggtcacgc agtagaatcg gctcatacct gccgttccgg
     1861 cttcactctc cagaggtaac accgatgtcc gatatcgtca tcgtcagcgg cgcccgcacc
     1921 cccatgggcg gcttccaggg cagcctgtcc agcgttccgg ccgtagagct gggcgccgcc
     1981 gccatccgcg aggccgtggc ccgtgccggc atcgcgccgg acgatgtgca ggaagtgatc
     2041 atgggctgcg tgctgcccgc cggcctcaag caaggcccgg cccgacaggc atcgctgaat
     2101 gccggcctgc cgtccgccac cggctgcacc accatcaaca agctctgtgg ctccggcatg
     2161 aaggccgtca tgcaggcgtt cgatgcgctc aaggccggca gcaacgaagt gatggtcgcc
     2221 ggcggcatgg agagcatgtc caacgcgccc tacatcatcg agaaagcccg caccggcctg
     2281 cgcatgggcc atggcgaaat caaggaccac atgttcttcg acggcctgga agacgcccgc
     2341 accggccgcc tgatgggctc cttcgcccag gaaaccgccg acaagtacgg catcacccgc
     2401 gaggagatgg acgcctacgc catcgagtcg ctcaagcgcg cccaggccgc catccagagc
     2461 ggcgaactgg ccagcgagat cgttccggtc accgtcacca gccgcaaggg cgaggtcgtg
     2521 gtgaaggatg acgagcagcc gctgaccgcc aacctggaca agatccccgg cctcaagccg
     2581 gcgttcaaga aggacggaac gatcaccgcc gccaacgcca gctcgatctc cgacggcgcc
     2641 agcgccctgg tcctgatgac cgccgaggaa gccgccaaac gcggtctcaa gccgctggcc
     2701 aggatcgtcg cccacgccac ccagagccag gacccgagcg agttcaccct cgcgccgatc
     2761 ggcgccatga gcaacctgtt caagaagacc ggctggagca aggacgacgt cgatctgtac
     2821 gagatcaacg aggccttcgc catggtcacc atgctggcca tgcgcgaaca cggcctggat
     2881 cacgccaagg tcaacgtcta cggcggcgcc tgcgcccagg gc
//
LOCUS       DATIHC010000366         2412 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33735, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000366 DATIHC010000000
VERSION     DATIHC010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2412)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2412)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2412
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33735"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..120)
                     /locus_tag="VLF16_05870"
     CDS             complement(<1..120)
                     /locus_tag="VLF16_05870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015096925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX70441.1"
                     /translation="MQRQFDDILLGSIELFCLAAELGSFTAAGLAAGVTPAAVS"
     gene            238..972
                     /locus_tag="VLF16_05875"
     CDS             238..972
                     /locus_tag="VLF16_05875"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014860888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSX70442.1"
                     /translation="MNNSRTVVITGASSGIGFGLVQAFLANGFNVVGNARSAEGLEQA
                     RAKLGNPAAFVGVAGDIAKPDTARRLIEAGIEAFGQVDVLVNNAGFFLPKPFIEYSPE
                     DIDGLLETNLKGVVYASQAAAAHMIERRQGQIINITAAVALQPNLAVPAALPVLIKGG
                     LNQITRALALELSPHNIQVNAVAPGIIETPMHDPASFDFLKGLQPAGRIGRVEEIADA
                     VLYLANAHFTTGVVLPVDGGMSVGKW"
     gene            1043..1252
                     /locus_tag="VLF16_05880"
     CDS             1043..1252
                     /locus_tag="VLF16_05880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019438808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HSX70443.1"
                     /translation="MPFVSVRITRDGVTREQKAQVIKEITETLQRVLDKKPELTHIVI
                     EEVDTDNWGYAGITTTEYRSRLPEG"
     gene            complement(1255..>2412)
                     /gene="norR"
                     /locus_tag="VLF16_05885"
     CDS             complement(1255..>2412)
                     /gene="norR"
                     /locus_tag="VLF16_05885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017360880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide reductase transcriptional regulator
                     NorR"
                     /protein_id="HSX70444.1"
                     /translation="RLWGAITLDALTPGSFARATAQRLQRWALIIETALRVSRLEGEV
                     RSLRLARRETVESGNETEGAILGDSPMLRQLLDELAVVADSDLPVLLQGETGVGKELF
                     ARWLHAHSPRARKPLVYVNCAALPETLAESELFGHIKGAFSGAGQDRPGRFEAANGGT
                     LFLDEIGELPLSIQAKLLRALQGGEIQRLGADQPRHVDVRVIAATNRRLWEEVREGRF
                     RADLYHRLSVYPVHIPPLRERGRDVLVLAGHFLELNRARLGLRCLRLSPEAERTLQAY
                     AWPGNIRELEHVISRAALKVLSQAESRTALLSIEAPWLGLEVTPSEPRVAAAPQAVAP
                     QESLQQATDRYQRDLIRSVLEQHQGKWAAAARTLQIDPSNLRKLARRLALV"
BASE COUNT          394 a          890 c          787 g          341 t
ORIGIN      
        1 gctcactgcc gccggcgtca cgccggccgc cagcccggcc gcggtgaagc tgcccagctc
       61 ggccgccagg cagaacagct cgatgctgcc gagcaggatg tcgtcgaatt ggcgctgcat
      121 gattgattac accgtgtatc aactgaagtt ctcgaagcca tatttatccg cccaggaggc
      181 aaaaatatag tcctcccaac ggcgccaacc gggtgcctcc tcatcgggag aagcgacatg
      241 aacaacagca gaaccgtagt gatcaccggc gcctccagcg gcatcggctt cggcctggtc
      301 caggccttcc tcgccaatgg cttcaacgtg gtcggcaatg cccgttccgc cgaggggctg
      361 gaacaggccc gggcgaagct tggcaatccc gccgccttcg tcggcgtggc cggcgacatc
      421 gccaaaccgg acaccgcgcg ccgcctgatc gaggccggca tcgaggcctt cggccaggtc
      481 gacgtgctgg tcaacaacgc cggcttcttc ctgcccaagc ccttcattga atacagcccc
      541 gaggacatcg acggcctgct ggaaaccaac ctcaagggcg tggtctacgc ctcccaggcc
      601 gccgccgcgc acatgatcga gcggcgccag gggcagatca tcaacatcac cgccgccgtg
      661 gcgctgcagc ccaacctcgc cgtgcccgcc gcgctgccgg tgctgatcaa gggcggcctc
      721 aaccagatca cccgcgccct ggcgctggag ctgtcgccgc acaatatcca ggtcaacgcg
      781 gtcgcccccg gcatcatcga gacgccgatg cacgacccgg ccagcttcga cttcctcaaa
      841 ggcctgcagc cggccgggcg catcggccgc gtcgaggaaa tcgccgatgc cgtgctgtac
      901 ctggccaacg cccatttcac cacgggcgtg gtgctgccgg tcgacggcgg catgagcgtc
      961 ggcaagtggt aacaggctga acctgacggc gcggcacccg ccgccgcgcc tgaacatttc
     1021 cccaccccac aggagcaaca ccatgccctt cgtcagcgtc cgcatcaccc gcgacggcgt
     1081 cacccgcgag cagaaagccc aggtcatcaa ggagatcacc gagaccctgc agcgcgtgct
     1141 cgacaagaag cccgagctca cccatatcgt gatcgaggaa gtcgacaccg ataactgggg
     1201 ctacgcgggc atcaccacca ccgagtaccg cagccggctg cccgagggct gacctcagac
     1261 cagcgccagc cgccgcgcca gcttgcgcag gttgctcggg tcgatctgca gcgtccgcgc
     1321 ggccgcggcc cacttgccct ggtgctgttc cagcacgctg cggatcaggt cgcgctggta
     1381 gcggtccgtg gcctgctgca gggattcctg cggcgcgacg gcctggggcg ccgcggcgac
     1441 cctgggctcg ctcggcgtca cctccagccc gagccagggc gcctcgatgc tcagcagcgc
     1501 ggtgcgcgac tcggcctggc tgagcacctt gagcgcggcc cggctgatca cgtgctccag
     1561 ctcgcggatg ttgcccggcc atgcgtaagc ctgcagcgtg cgctcggcct ccggcgacag
     1621 gcgcaggcaa cgcaggccca ggcgcgcccg gttgagttcg agaaaatgcc cggccagcac
     1681 cagcacgtcg cggccgcgct cacgcagcgg cggaatgtgc accgggtaga cggacagccg
     1741 atggtagagg tcggcgcgga accgcccctc cctcacctcc tcccacagcc gccggttggt
     1801 ggcggcgatc actcgcacgt ccacatggcg cggctggtcg gcgccgaggc gctggatctc
     1861 accgccctgc aaggcgcgca gcagcttggc ctggatcgac agcggcagtt cgccgatctc
     1921 gtcgaggaac agggtgccgc cgttggccgc ctcgaagcgc cccgggcggt cctggccggc
     1981 gccggagaac gcgcccttga tgtggccgaa cagctcgctc tcggccaggg tctccggcag
     2041 cgccgcgcag ttgacgtaga ccagcggctt gcgcgcccgc ggcgaatggg cgtgcagcca
     2101 gcgggcgaac agctccttgc cgacgccggt ctcgccctgc agcagcaccg gcaggtcgga
     2161 gtcggccacc accgccagtt cgtcgagcag ctggcgcagc atcgggctgt cgccgaggat
     2221 cgcaccctcg gtctcgttgc cgctctccac cgtctcgcgg cgggccaggc gcaggctgcg
     2281 cacctcgcct tccagacggc tgacccgcag cgcggtctcg atgatcagcg cccagcgctg
     2341 caggcgctgc gcggtggcgc gggcgaagct gccgggcgtc agcgcgtcga gggtgatggc
     2401 gccccacagc cg
//
LOCUS       DATIHC010000367         1572 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5826, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000367 DATIHC010000000
VERSION     DATIHC010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5826"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..439)
                     /gene="msrA"
                     /locus_tag="VLF16_05890"
     CDS             complement(<1..439)
                     /gene="msrA"
                     /locus_tag="VLF16_05890"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HSX70445.1"
                     /translation="MVLRSQILAHKLELPSAEQALPGRAESVPVPERHHVNGNPLKPP
                     FPAGLQQAVFGLGCFWGAERRFWQQAGVWSTAAGYAGGHTPNPTYEEVCSGLTGHTEV
                     VLVVFDPQQIRYEDLLKVFWEAHNPTQGMRQGNDIGTQYRSAIY"
     gene            complement(550..>1572)
                     /locus_tag="VLF16_05895"
     CDS             complement(550..>1572)
                     /locus_tag="VLF16_05895"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016495100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071111 - cyclic-guanylate-specific
                     phosphodiesterase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing phosphodiesterase"
                     /protein_id="HSX70446.1"
                     /translation="ADESAGQQLAQDLLATLDKPLFVDNQLISVTGSVGLACAPAHGD
                     DPHLLMKHAGLALHKAKANGKHQVQVFTEALNAEANYKLFVENNLRRALTQNELEVYY
                     QPKLCLRTGRLLGLEALLRWQHPEKGMISPDQFISVAEDTGLIIPIGKWVVRQACRAS
                     LELTALGMGQIQVAINLSAKQFTDPDLVGSIAAILEEEQLPPHLLELELTESLLLEGN
                     DTTRQQVTRLKALGLTLAMDDFGTGYSSLSYLKKFPIDVIKIDRSFIKDIPENQDDME
                     ITSAVIAMARNLKLKVVAEGIETAAQLGFLRRQQCDVGQGYLFDRPIPGRDLVDRLRR
                     YPCRGV"
BASE COUNT          234 a          486 c          565 g          287 t
ORIGIN      
        1 cgtagatggc cgagcggtac tgggtgccga tgtcgttgcc ctgacgcatg ccctgggtcg
       61 ggttgtgcgc ttcccagaac accttcagca ggtcttcgta acggatctgc tgcggatcga
      121 acaccaccag caccacctcg gtatgcccgg tcaggccgga gcagacttcc tcgtaggtgg
      181 ggttcggcgt gtggccgccg gcgtagcccg ccgcggtgct ccagacgccc gcctgctgcc
      241 agaagcgccg ctcggcgccc cagaaacagc cgaggccgaa caccgcctgc tgcaggccgg
      301 cggggaacgg tggcttgagc gggttgccgt tgacgtggtg ccgctcgggt accggcacgc
      361 tctcggcgcg gcccggcagg gcctgctcgg cgctgggcag ttcgagcttg tgggcgagga
      421 tttgcgaacg caggaccatg gtcgtttccc attgagcgat gaggaagagg gctagcttac
      481 cccgacagcg ggtgatggat agacgtcgcg gcggggcgga aattacagcg cctcatccgg
      541 cggcaagggc tagacgccgc ggcagggata gcggcgcagg cggtcgacta ggtcgcggcc
      601 ggggatcggc cggtcgaaca ggtagccctg gccgacgtcg cattgctggc ggcgcaggaa
      661 gcccagctgg gcggcggtct cgatgccctc ggcgaccacc ttgagcttga ggttgcgggc
      721 catggcgatc accgccgagg tgatctccat gtcgtcctga ttctcgggga tgtccttgat
      781 gaagctgcgg tcgatcttga tcacgtcgat cgggaatttc ttcaggtagc tcagcgacga
      841 gtagccggtg ccgaagtcgt ccatcgccag ggtcaggccc agggccttga ggcgcgtcac
      901 ctgctggcgg gtggtgtcgt tgccttcgag cagcaggctc tcggtcagct ccagctccag
      961 caggtgcggc ggcagctgct cttcctcgag aatcgcggcg atggagccga ccaggtcggg
     1021 gtcggtgaac tgcttggccg agaggttgat cgccacctgg atctggccca tgccgagtgc
     1081 cgtcagctcc aggctggcgc ggcatgcctg gcgcaccacc catttgccga tggggatgat
     1141 caggccggtg tcctcggcca cgctgatgaa ctggtccggg ctgatcatgc ccttttccgg
     1201 atgctgccag cgcagcagcg cctcgaggcc gagcaggcgc ccggtacgca ggcacagctt
     1261 gggctggtag tacacctcca gctcgttctg ggtcagcgcg cggcgcaggt tgttctcgac
     1321 gaacagcttg taattggcct cggcattgag cgcctcggtg aacacctgga cctggtgctt
     1381 gccgttggcc ttggccttgt gcagggcgag gccggcgtgc ttcatcagca gatgcgggtc
     1441 gtcgccatgg gccggcgcgc aggccaggcc gaccgagccg gtgacgctga tcagctgatt
     1501 gtcgacgaac agcggcttgt ccagggtcgc caacagatcc tgggccagct gctggccggc
     1561 gctttcgtcg gc
//
LOCUS       DATIHC010000368         2552 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8002, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000368 DATIHC010000000
VERSION     DATIHC010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2552)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2552)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2552
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8002"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..938
                     /gene="glyA"
                     /locus_tag="VLF16_05900"
     CDS             <1..938
                     /gene="glyA"
                     /locus_tag="VLF16_05900"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007162718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HSX70447.1"
                     /translation="LALLSAGDTILGMSLAHGGHLTHGASVSSSGKLYNAVQYGITDA
                     GLIDYDEVERLAVEHKPKMIVAGFSAYSQVLDFARFRAIADKVGAYLFVDMAHVAGLV
                     AAGVYPNPVPFADVVTTTTHKTLRGPRGGLILAKKNEEIEKKLNSAVFPGAQGGPLEH
                     VIAAKAICFKEALQPEFKTYQQQVVKNAQAMAGVFIERGFDVVSGGTQNHLFLLSLIK
                     QDITGKDADAALGRAFITVNKNSVPNDPRSPFVTSGLRIGTPAVTTRGFQEAECKELA
                     GWICDILQNMGDESVVDAVRAKVQAVCAKLPVYGK"
     gene            1190..>2552
                     /locus_tag="VLF16_05905"
     CDS             1190..>2552
                     /locus_tag="VLF16_05905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011268673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase family 28-related protein"
                     /protein_id="HSX70448.1"
                     /translation="MVFDAKDYGALGDGITDDTAALQAAIDAAAAAGGGTVQIAAGVY
                     RVSGGEEASDGCLMLPSNVYLQGAGMGETVLKVVDGWDQKITGVIRSAYGEETHDFGV
                     SDLTIDGNRDATTGKIDGWFNGYIPGQDGADRNVTLERVEIRDCSGYGFDPHEQTINM
                     LIKDCVAHGNGLDGFVADYMIDGAFVGNVAYDNDRHGFNVVTSTHDFVLLDNVAYGNG
                     GNGIVVQRGSDDIPSPENILIQGGEYYGNAKEGILIKLSSQVTVDGAEIYGNGGTGVR
                     IYGSSDVQVINSEIHGNAQSAPNPEILVQSYDDTAGASGRFWTAQNNLIEHNVIRGEG
                     HSTYGVQERNDGTRGTGVYDNDISATVRGEALLYGTGSVMSDEPSGQLVVTLEGTAGN
                     DLLQGGSGSERLLGMAGNDTLSGAAGDDLLDGGAGRDRLLGGQGADVFRFSALGDSYL
                     NGGN"
BASE COUNT          496 a          870 c          800 g          386 t
ORIGIN      
        1 acctggctct gctgtcggcc ggtgacacca tcctcggcat gagcctggcc cacggcggcc
       61 acctgaccca cggcgcctcc gtgtcctcct ccggcaagct gtacaacgcc gtgcagtacg
      121 gcatcaccga cgccggcctg atcgactacg acgaagtcga gcgcctggcc gtcgagcaca
      181 agccgaagat gatcgtcgcc ggcttttccg cctactccca ggtgctggac ttcgcccgct
      241 tccgcgccat cgccgacaag gtcggtgcct acctgttcgt cgacatggcc cacgtggccg
      301 gtctggtcgc cgccggcgtg tacccgaacc cggtaccgtt cgccgacgtg gtcaccacca
      361 ccacccacaa gaccctgcgc ggcccgcgcg gcggcctgat cctggccaag aagaacgaag
      421 agatcgagaa gaagctcaac tccgccgtct tcccgggcgc ccagggtggc ccgctggagc
      481 acgtgatcgc cgccaaggcc atctgcttca aggaagccct gcagcccgag ttcaagacct
      541 accagcagca ggtggtgaag aacgcccagg ccatggccgg cgtgttcatc gagcgcggtt
      601 tcgatgtcgt ctccggcggc acccagaacc acctgttcct gctctcgctg atcaagcagg
      661 acatcaccgg taaggacgcc gacgccgccc tgggtcgcgc cttcatcacc gtgaacaaga
      721 acagcgtgcc gaacgacccg cgttcgccct tcgtcacctc cggtctgcgc atcggcaccc
      781 cggccgtcac cacccgcggc ttccaggaag ccgagtgcaa ggagctggcc ggctggatct
      841 gcgacatcct gcagaacatg ggcgacgagt ccgtggtcga tgccgtgcgc gcgaaggtcc
      901 aggccgtctg cgccaaactg ccggtgtacg gaaagtagtc gtcaaagtcg tgacagaaga
      961 gcccggcacc cgccgggctt ttttgtgccc gtggcgtttt cctgacgcag cggttagaaa
     1021 gaataaataa gcagacctat caaagggttg gatcgataaa acggtcaaat acccgtgttt
     1081 ggccaaatct ctgacgggcg gtcgtcgcca cccggcctta aacgccttaa accatgcctt
     1141 cttcatccga accgctatta ccggcggcgg gcaaccaggg ggcagcacca tggttttcga
     1201 tgcgaaggat tacggcgcac tgggcgatgg catcaccgac gacaccgcag ccctccaggc
     1261 cgccatcgat gccgccgccg cggccggtgg aggcacggta cagatcgccg ccggcgtcta
     1321 ccgggtcagc ggtggagagg aggcctccga cggctgcctg atgctgccga gcaacgtcta
     1381 cctgcaaggc gcgggcatgg gcgagacggt gctcaaggtg gtcgacggct gggaccagaa
     1441 gatcaccggc gtcatccgct cggcctacgg cgaggagacc cacgacttcg gcgtcagcga
     1501 cctcaccatc gacggcaacc gcgacgccac caccggcaag atcgacggct ggttcaacgg
     1561 ctacatcccc gggcaggacg gcgccgaccg caacgtgacc ctggagcgcg tggagatccg
     1621 cgactgctcg ggctacggct tcgatccgca cgaacagacc atcaacatgc tgatcaagga
     1681 ctgcgtcgcc cacggcaacg gcctggacgg cttcgtcgcc gactacatga tcgacggtgc
     1741 cttcgtcggc aacgtcgcct acgacaacga ccgccacggc ttcaacgtgg tcaccagcac
     1801 ccacgacttc gtgctgctcg acaacgtggc ctatggcaac ggcggcaacg gcatcgtcgt
     1861 gcagcgcggc tcggacgaca tcccctcacc ggaaaacatc ctgatccagg gcggcgagta
     1921 ctacggcaat gccaaggaag gcatcctgat caagctgtcc agccaggtga cggtggacgg
     1981 cgccgagatc tacggcaacg gcggcaccgg cgtacgcatc tatggcagtt ccgacgtgca
     2041 ggtgatcaac agcgagattc acggcaacgc gcagagcgct cccaatccgg agatcctcgt
     2101 gcagtcctac gacgacacgg ccggcgcctc ggggcggttc tggacggcgc agaacaattt
     2161 gatcgagcac aacgtcatcc gcggcgaggg gcactcgacc tacggcgtgc aggaacgcaa
     2221 cgatggcacc cgcggaaccg gcgtgtacga caacgacatc agcgccaccg tgcgcggcga
     2281 agccctgctg tacggcacag gtagcgtaat gtccgacgag cccagcgggc agctggtggt
     2341 gaccctggaa gggaccgcgg gcaacgacct gctgcagggc ggctccggca gcgagcgcct
     2401 tttaggaatg gcaggcaacg acacgctgtc cggcgcggcc ggggacgacc tgctggatgg
     2461 cggcgccggg cgcgacaggc tcctgggcgg ccagggtgcc gatgtattcc gtttctccgc
     2521 cctcggcgac agctacctga acggcggcaa ct
//
LOCUS       DATIHC010000369         3408 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43024, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000369 DATIHC010000000
VERSION     DATIHC010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3408)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3408)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3408
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43024"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2641
                     /gene="nuoG"
                     /locus_tag="VLF16_05910"
     CDS             <1..2641
                     /gene="nuoG"
                     /locus_tag="VLF16_05910"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_process: GO:0006120 - mitochondrial electron transport,
                     NADH to ubiquinone [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoG"
                     /protein_id="HSX70449.1"
                     /translation="DIPYFCWHPALGSVGACRQCAVKQYTDENDKRGRIVMSCMTPAT
                     DNTWISIDDEESKAFRASVVEWLMTNHPHDCPVCEEGGHCHLQDMTVMTGHNQRRYRF
                     TKRTHQNQQLGPFISHEMNRCIACYRCVRYYKDYAGGTDLGVYGAHDNVYFGRVEDGV
                     LESEFSGNLTEVCPTGVFTDKTHSERYNRKWDMQFAPSICHGCSSGCNISPGERYGEI
                     RRIENRFNGSVNHYFLCDRGRFGYGYTNREDRPRQPLLLDKSGGEAKLGIDAALDKAA
                     ELLKGKRVIGIGSPRASLEGNYALRELVGEANFYSGIAAVELDNIRLIRDVLQNGPLP
                     VPSLREIEDHDAVFVLGEDLTQTAARVALALRQSVKGKATDIAASMKIQDWHMAAVQN
                     VAQDALHPLFIASVDATRLDDVAEACVHAAPADLARIGFAVAHAIDPSAPVVTGLDDE
                     AAELVRLIAEALLAGQRPLIVSGASLGEKSIIEAAANIAQALKNRDKNASISLVVPEA
                     NSMGLALFGGESVDAALEALTSGQADAVVVLENDLYRRADAAKVDAALAAAKAVIVAD
                     HQRTATTAKAHLVLSAASFAEGDGTLVSQEGRAQRFFQVFEPSYYDSSILVREGWRWM
                     HALHSTLLGKAVDWTQLDQVTEAVAASSSVLAAIKDAAPNASFRIKGLKLAREPLRYS
                     GRTAMRANISVHEPRQPQDQDSAFAFSMEGYSGSKEDRQQIPFAWSPGWNSPQAWNKF
                     QDEVGGHLRAGDPGVRLIESQGKTLAWFTVPGAFAPAQGTWQVVPFHHLFGSEENSSR
                     AAPVQERIQPAYVALAKAEADRLGVNDGALISLTVAGLALRLPVKVSEDLALGLVGLP
                     AGFAGIPAAIAGATATGLQEAAQ"
     gene            2638..>3408
                     /gene="nuoH"
                     /locus_tag="VLF16_05915"
     CDS             2638..>3408
                     /gene="nuoH"
                     /locus_tag="VLF16_05915"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HSX70450.1"
                     /translation="MSWLTPELLDVFIAVLKAIVILLVVVVCGALLSFVERRLLGWWQ
                     DRYGPNRVGPFGMFQIAADMLKMFFKEDWTPPFADKFIFMLAPMIAFAAMLMAFAIIP
                     VTPTWGVADLNIGILFFFAMAGLSVYAVLFAGWSSNNKFALLGSLRASAQTISYEVFL
                     ALALMGIVAQVGSFNMRDIVDYQAENLWFIIPQFFGFCTFFIAGVAVTHRHPFDQPEA
                     EQELADGYHIEYAGMKWGMFFVGEYIGIVTISALLVTLF"
BASE COUNT          581 a         1199 c         1065 g          563 t
ORIGIN      
        1 cgacatcccc tacttctgct ggcacccggc gctcggtagc gtcggcgcct gccgccaatg
       61 cgcggtgaag caatacaccg acgagaacga caagcgcggc cgcatcgtca tgtcctgcat
      121 gacgccggcg accgacaaca cctggatcag catcgacgac gaagagtcca aggccttccg
      181 cgccagcgtc gtcgagtggc tgatgaccaa ccacccgcac gactgcccgg tgtgcgagga
      241 aggcggtcac tgccacctgc aggacatgac ggtgatgacc ggccacaacc agcgccggta
      301 ccgcttcacc aagcgcaccc accagaacca gcagctcggc ccgttcatct cccacgagat
      361 gaaccgctgc atcgcctgct accgctgcgt gcgctactac aaggactacg ccggcggcac
      421 cgacctgggc gtatacggcg cacacgacaa cgtgtatttc ggccgcgtcg aagacggcgt
      481 gctggagagc gagttctccg gcaacctcac cgaggtctgc ccgactggcg tgttcaccga
      541 caagacccac tccgagcgct acaaccgcaa gtgggacatg cagttcgccc cgagcatctg
      601 ccatggctgc tccagcggct gcaacatcag ccccggtgag cgctacggcg agatccgccg
      661 catcgagaac cgcttcaacg gctcggtgaa ccactacttc ctgtgtgacc gcggccgctt
      721 cggctacggc tacaccaacc gtgaagatcg cccacgccag cccctgcttc ttgataagag
      781 cggcggtgaa gccaagctgg gcatcgacgc cgcgctggac aaggctgccg agctgctcaa
      841 gggcaagcgt gtgatcggca tcggttcgcc gcgcgccagc ctggaaggca actacgccct
      901 acgcgaactg gtcggcgaag ccaacttcta cagtggcatc gccgccgtcg agctggacaa
      961 catccgcctg atccgcgacg tgctgcagaa cggcccactg ccggtgccgt cgctgcgcga
     1021 gatcgaagac cacgacgccg tgttcgtcct cggtgaagac ctgacccaga ccgccgcgcg
     1081 cgtcgccctg gccctgcgcc agtcggtcaa gggcaaggcc accgatatcg ccgcctcgat
     1141 gaagatccag gactggcaca tggccgccgt gcagaacgtg gcccaggacg ccctgcatcc
     1201 gctgttcatc gccagcgtcg acgccacccg tctggatgac gtcgccgagg cctgcgtgca
     1261 tgccgcgccc gccgacctgg cgcgtatcgg cttcgccgtg gcccacgcca ttgacccgag
     1321 cgccccggtc gtcaccggcc tggacgacga ggccgcggag ctggtgcggc tgatcgccga
     1381 ggccctgctg gccggccagc gcccgctgat cgtcagcggt gcctcgctgg gcgagaagag
     1441 catcatcgag gccgcggcga atatcgctca ggctttgaaa aatcgggaca aaaacgcgtc
     1501 tatcagcctg gtggtgccgg aagccaacag catgggcctg gccctgtttg gtggtgagtc
     1561 ggtcgacgcg gcgctggaag ccctgacctc cggtcaggcc gacgccgtgg tggtgctgga
     1621 gaacgacctg taccgccgcg ccgacgccgc caaggtcgat gccgcgctgg cagccgccaa
     1681 ggcggtgatc gtcgccgacc accagcggac cgccaccacc gccaaggccc acctggtact
     1741 ctccgccgcc agcttcgccg aaggcgatgg caccctggtc agccaggaag gccgcgccca
     1801 gcgcttcttc caggtgttcg agccgagcta ctacgacagc agcatcctcg tgcgcgaagg
     1861 ctggcgctgg atgcacgcgt tgcacagcac cctgctgggc aaggccgtgg actggaccca
     1921 gctggatcag gtcaccgaag ccgtcgccgc cagcagttcc gtgctggccg cgatcaagga
     1981 cgccgcgcca aacgcctcgt tccgcatcaa gggcctgaag ctggcgcgtg agccgctgcg
     2041 ttacagcggc cgtaccgcca tgcgcgccaa catcagcgtg cacgagccgc gtcagccgca
     2101 ggaccaggac tccgccttcg ccttctccat ggaaggctat tccggcagca aggaagatcg
     2161 tcagcagatt ccgttcgcct ggtcgccggg ctggaactcg ccgcaggcct ggaacaagtt
     2221 ccaggatgag gtcggcggcc atctgcgtgc cggtgatccg ggcgtgcgcc tgatcgaatc
     2281 gcagggcaag accctggcct ggttcactgt gccgggcgcc ttcgccccgg cccagggcac
     2341 ctggcaggtc gtgccgttcc accacctgtt cggcagcgag gagaactcct cccgcgccgc
     2401 gccggtgcag gagcgcatcc agcccgccta cgtcgctctg gccaaggccg aggccgaccg
     2461 cctgggcgtc aacgacggtg cgctgatcag cctgaccgtc gccggcctgg ccctgcgcct
     2521 gccggtaaaa gtcagcgaag acctggccct gggcctggtc ggcctgccag ccggcttcgc
     2581 cggcatcccg gcggccatcg ccggcgcgac agccaccgga ctgcaggagg ccgcgcaatg
     2641 agctggctga cgcccgaact gctcgacgtc ttcatcgcgg tgctcaaggc catcgtcatc
     2701 ctgctggtgg tggtggtctg cggcgcgctg ctgagcttcg tcgaacgccg tctgctgggc
     2761 tggtggcagg accgttacgg tccgaaccgc gtaggcccgt tcggtatgtt ccagatcgcc
     2821 gcggacatgc tgaagatgtt cttcaaggaa gactggacgc cgccgttcgc cgacaagttc
     2881 atcttcatgc tggcgccgat gatcgccttc gccgccatgc tgatggcctt cgccatcatc
     2941 ccggtcactc cgacctgggg tgtggcggac ctgaacatcg gcatcctgtt cttcttcgcc
     3001 atggccggtc tgtcggtgta cgccgtgctg ttcgccggct ggtcgagcaa caacaagttc
     3061 gccctgctcg gcagcctgcg tgcctcggcc cagaccatct cctacgaggt gttcctggcc
     3121 ctggcgctga tgggcatcgt tgcccaggtc ggctcgttca acatgcgcga catcgtcgac
     3181 taccaggccg aaaacctgtg gttcatcatt ccgcagttct tcggcttctg taccttcttc
     3241 atcgccggcg tcgccgtgac tcaccgtcac ccgttcgacc agccggaagc ggagcaggag
     3301 ctggccgacg gttaccacat cgaatatgcc ggcatgaaat ggggcatgtt cttcgttggc
     3361 gagtacatcg gcatcgtgac catctcggcc ctgctggtga ccctgttc
//
LOCUS       DATIHC010000370         4964 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_40722, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000370 DATIHC010000000
VERSION     DATIHC010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4964)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4964)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4964
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40722"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..471)
                     /locus_tag="VLF16_05920"
     CDS             complement(<1..471)
                     /locus_tag="VLF16_05920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1329 domain-containing protein"
                     /protein_id="HSX70451.1"
                     /translation="MQMKFSTLHSQLLRAGCLGLGLLAGQALAAVPAEQVARLGKDLT
                     PVGAETAGNADGSIPAWTGGLARDAGRRDADGFLSDPFAADQPLFTITADNVEQHKDK
                     LTPGQLALFQRYPQSYRIPVYPTRRSVNLPQSYLDTTRQNAADTQLAEGGNGLQN"
     gene            complement(477..2261)
                     /locus_tag="VLF16_05925"
     CDS             complement(477..2261)
                     /locus_tag="VLF16_05925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011920529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1302 domain-containing protein"
                     /protein_id="HSX70452.1"
                     /translation="MHPQALALAVALASALPAQAANFTLGEIEGQLDSSLSIGASWAM
                     DDADAEFIGRANGGDASTRTSDDGRLNFKKGETFSKIFKGIHDLQLRYGDTGVFLRGK
                     YWYDFELKDEHRLLYDIDDSGRDNAAQASGFELLDAFVYHNYLLGDLPGSVRAGKQVV
                     SWGESTFIGNSINAINPADVAAFRRPGSEIKEGLIPVNMLYVTQGLTENLSAEAFYQL
                     EWEKTVLDNCGTFFGTDTAAKGCEYGMTTFGSDYDRDPSVYGWVPRLDDQEARDSGQF
                     GVALRWLVPELNDTEFGFYAMNYHSRTPESMWTVGSADFSAITGAPGPASARYYLEYP
                     EDIRLYGISFATTLPDGTALSGEVSHRPNMPLSLNGTDVSTAASVGGLVGLLGIDGLA
                     IFDRGWADASQGSQVQGYKRMPFTQAQVSAIHTFDNVLGGDRLTLIGEVGYSHIGDLG
                     SSDGSDLRFGRSSVYGNGQLPDWAAALGVTGNSLCQSLLNPTNPDQCTGKGYYTQNSW
                     GYRLRTQLEFNDAIAGVNLKPNLAFAHDVEGYGPTFTEGNQSVSLGLDADYLSTYTAS
                     LSYTNYFGGDFNTNTDRDFLAFSVGMSF"
     gene            complement(2625..4802)
                     /locus_tag="VLF16_05930"
     CDS             complement(2625..4802)
                     /locus_tag="VLF16_05930"
                     /EC_number="2.3.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004474 - malate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006097 - glyoxylate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malate synthase G"
                     /protein_id="HSX70453.1"
                     /translation="MTERVQVGGLQVAKALYDFINNEAIPGTGIAADQFWAGAEAVIN
                     ELAPKNRALLAKRDELQAQIDAWHQARKGRAHDAAAYKSFLQEIGYLLPEPADFQATT
                     QNVDEEIARLAGPQLVVPVMNARFALNASNARWGSLYDALYGTDVISEENGAEKGKGY
                     NKVRGDKVIAFARAFLDEAAPLEGASHVDATAYAIKNGQLAVTLKSGSETGLQNAAQF
                     IAFQGDAAKPQAVLLKHNGLHFEIQIDPSSPIGQTDAAGVKDVLMEAALTTIMDCEDS
                     VAAVDADDKVVVYRNWLGLMKGDLAEEVSKGGSTFTRTMNPDRVYTKADGSELTLHGR
                     SLLFVRNVGHLMTNPAILDAAGNEIPEGIQDGLFTSLIAIHNLNGNTSRKNTRTGSVY
                     IVKPKMHGPEEVAFAGEIFSRVEDVLGLPRNTLKVGIMDEERRTTVNLKACIKAASER
                     VVFINTGFLDRTGDEIHTSMEAGAVVRKAAMKSEKWIGAYENNNVDIGLATGLQGKAQ
                     IGKGMWAMPDLMAAMLEQKIGHPLAGANTAWVPSPTAATLHALHYHKVDVFARQAELA
                     KRTPASVDDILTIPLAPNTDWSAEEIQNELDNTSQGILGYVVRWIDQGVGCSKVPDIN
                     DVGLMEDRATLRISSQLLANWLRHGVVTEAQVVESLKRMAPVVDRQNANDPLYRPLAP
                     NFDSNIAFQAALELVVEGTQQPNGYTEPVLHRRRREFKAANGL"
BASE COUNT          691 a         1490 c         1831 g          952 t
ORIGIN      
        1 gttctgcagg ccgttgccgc cttcggccag ctgggtgtcg gcggcgttct ggcgggtggt
       61 gtcgaggtag ctctgcggca ggttcaccga gcggcgggtc gggtagaccg ggatgcggta
      121 gctctgcggg taacgctgga acagggcgag ctggccgggg gtgagcttgt ccttgtgctg
      181 ctcgacgttg tcggcggtga tggtgaacag cggctggtcg gcggcgaacg ggtcgctgag
      241 gaaaccgtcg gcgtcgcgtc ggccggcgtc ccgggccagg ccgccggtcc aggccgggat
      301 gctgccgtcg gcgttgccgg cggtctcggc gccgaccggg gtcaggtcct tgccgaggcg
      361 ggcgacctgc tcggctggta ccgcggccag ggcttggccg gcgagcaggc cgaggcccag
      421 gcagccggcg cgcagcagtt gcgagtggag agtggaaaac ttcatctgca ttgacctcag
      481 aagctcatgc cgacgctgaa ggcgaggaag tcgcggtcgg tgttggtgtt gaagtcgccg
      541 ccgaagtagt tggtgtaact caggctggcg gtgtaggtgg acaggtagtc ggcatccagg
      601 cccaggctca ccgactggtt gccctcggtg aaggtcggcc cgtagccctc gacgtcgtgg
      661 gcgaaggcca ggttgggctt gaggttcacc ccggcgatgg cgtcgttgaa ctccagttgg
      721 gtgcgcaggc ggtagcccca ggagttctgg gtgtagtagc ccttgccggt gcactggtcc
      781 gggttggtgg ggttgagcag gctctggcac agcgagttgc cggtcacgcc gagggcggcc
      841 gcccagtcgg gcaactggcc gttgccgtac acgctgctgc ggccgaagcg caggtcggag
      901 ccgtcgctgg aaccgaggtc gccgatatgg ctgtagccga cctcgccgat cagggtcagg
      961 cggtcgccgc cgagcacgtt gtcgaaggtg tgtatggcgc tgacctgggc ctgggtgaag
     1021 ggcatgcgct tgtagccctg cacctggctg ccctggctcg cgtcggccca gccgcggtcg
     1081 aagatcgcca ggccgtcgat gccgagcagg ccgaccaggc cgccgacgct ggcggcggtg
     1141 gagacgtcgg tgccgttgag cgacagcggc atgttcggcc ggtggctgac ctcgccggac
     1201 agcgcggtgc cgtcgggcag ggtggtggcg aagctgatgc cgtacaggcg gatatcttcc
     1261 gggtactcca ggtagtagcg cgcgctggcc gggccgggcg caccggtgat ggcgctgaag
     1321 tcggcgctgc ccacggtcca catgctctcc ggcgtgcggc tgtggtagtt catggcgtag
     1381 aagccgaact cggtatcgtt cagctccggt accagccagc gcagggccac gccgaactga
     1441 ccgctgtcac gggcttcctg gtcatccagg cgcggcaccc agccgtatac cgacgggtcg
     1501 cggtcatagt cgctgccgaa ggtggtcatg ccgtattcgc agcccttggc cgcggtgtcg
     1561 gtgccgaaga aggtgccgca gttgtcgagg acggtctttt cccactcgag ctggtagaag
     1621 gcctcggcgg acaggttctc ggtcaggccc tgggtgacgt agagcatgtt gaccgggatc
     1681 aggccttcct tgatctccga gcccggccgg cggaacgccg ccacgtcggc ggggttgatg
     1741 gcgttgatgc tgttgccgat gaaggtgctc tcgccccagc tcaccacctg cttgccggcg
     1801 cgcacgctgc ccggcaggtc gccgagcagg tagttgtggt agacgaaggc gtcgagcagc
     1861 tcgaagccgg aggcctgcgc ggcgttgtcg cggccgctgt cgtcgatgtc gtagagcagg
     1921 cggtgctcgt ccttcagctc gaagtcgtac cagtacttgc cgcgcaggaa cacgccggtg
     1981 tcgccgtagc gcagctgcag gtcgtggatg cccttgaaga tcttcgagaa ggtctcgccc
     2041 ttcttgaagt tcaggcgacc gtcgtcgctg gtgcgggtcg aggcgtcgcc gccgttggcc
     2101 cggccgatga actcggcgtc ggcgtcgtcc atcgcccagc tggcgccgat ggacagagag
     2161 gagtcgagct gcccctcgat ttccccgagc gtgaagttgg cggcctgggc cggtagcgcg
     2221 ctggccagcg cgacggccag ggccagggct tggggatgca tggcccccgc gcctgttgtt
     2281 gttcttttca tggtgctctc cgctgttcaa agaaggcccg cggcacggcc gcgcggcgca
     2341 tcgcttcttt gcagcctgat gacaggtgcc ggggcatcct aggtaagccc cgcggccctg
     2401 acttctgaaa aatccttatg cccatagcca aaggtgaggt cggcgccagg gcgcggacgc
     2461 aagggcgtgc ggtgacttgg gcaaagcccc gtggttggcg gctcgggcgg cattcgccgt
     2521 gcataaccca gggttatccc gataagcagc cgggcgtcgg cgccctgatt gcgggcataa
     2581 aaaaaccgcc ccggagggcg gttctttgca gcgcttgcgg agaattacag accgttggcg
     2641 gccttgaact cgcggcggcg acggtgcagg accggctcgg tgtagccgtt cggctgctgg
     2701 gtgccttcga ccaccagttc cagggcggcc tggaaggcga tgttgctgtc gaagttcggc
     2761 gccagcgggc ggtacagcgg gtcgttggcg ttctggcggt cgaccaccgg cgccatgcgc
     2821 ttgaggctct cgacgacctg cgcctcggtc accacgccat gacgcagcca gttggccagc
     2881 agctggctgg agatgcgcag ggtggcgcga tcttccatca ggccgacgtc gttgatgtcc
     2941 ggcaccttgg agcagccgac gccctggtcg atccagcgca ccacgtagcc gaggatgccc
     3001 tgggaggtgt tgtccagttc gttctggatc tcttcggcgg accagtcggt gttcggtgcc
     3061 agcgggatgg tcaggatgtc gtccaccgac gccggggtgc gcttggccag ctcggcctga
     3121 cgggcgaaca cgtcgacctt gtggtagtgc agggcgtgca gggtggcggc ggtcggcgac
     3181 gggacccagg cggtgttggc gccggccagc gggtggccga tcttctgctc cagcatcgcg
     3241 gccatcaggt cgggcatggc ccacatgccc ttgccgatct gtgccttgcc ctgcaggccg
     3301 gtggccaggc cgatgtcgac gttgttgttc tcgtaggcgc cgatccactt ctcggatttc
     3361 atggcggcct tgcgcaccac ggcgccggct tccatggagg tgtggatttc gtcaccggtg
     3421 cggtcgagga agccggtgtt gatgaacacc acgcgctcgc tggcggcctt gatgcacgcc
     3481 ttgaggttga cggtggtgcg gcgctcctcg tccatgatgc cgaccttcag ggtgttgcgc
     3541 ggcaggccga ggacgtcctc gacgcggctg aagatctcgc cggcgaaggc gacttcttcc
     3601 gggccgtgca tcttcggctt gacgatgtac acggagccgg tgcgggtgtt cttgcggctg
     3661 gtattgccat tcaggttgtg gatggcgatc aggctggtga acaggccgtc ctggatgcct
     3721 tccggaatct cgttgccggc ggcgtcgagg atggccgggt tggtcatcag gtggccgacg
     3781 ttgcgcacga acagcaggct acggccgtgc agggtcagct cggagccatc ggccttggtg
     3841 tagacgcggt ccgggttcat ggtgcgggtg aaggtgctgc cgcccttgct gacttcttcg
     3901 gccaggtcgc ccttcatcag gcccagccag ttgcgataga ccacgacctt gtcgtcggcg
     3961 tcgacggcgg ccacggagtc ttcgcagtcc atgatggtgg tcagggcggc ttccatcagc
     4021 acgtccttga cgccggcggc gtcggtctgg ccgatcgggc tgctcgggtc gatctggatc
     4081 tcgaagtgca ggccgttgtg cttgagcagc acggcttgcg gcttggcggc atcgccctgg
     4141 aaggcgatga actgcgcggc gttctgcagg ccggtctcgc tgccgctctt cagggtcacg
     4201 gccagctggc cgttcttgat ggcgtaggct gtggcgtcga cgtgggaggc gccctccagc
     4261 ggggcggcct cgtcgaggaa ggcgcgggcg aaggcgatga ccttgtcgcc gcggaccttg
     4321 ttgtagccct tgcccttctc ggcgccgttc tcttcgctga tcacgtcggt gccgtagagg
     4381 gcgtcataca gcgagcccca gcgggcgttg gaggcgttca gggcgaagcg cgcgttcatc
     4441 accggcacta ccagctgcgg cccggccagg cgggcgattt cttcgtcgac gttctgggtg
     4501 gtggcctgga agtcagccgg ctcgggcagc aggtaaccga tttcctggag gaagctcttg
     4561 taggcggcgg cgtcatgggc ccgacccttg cgggcctggt gccaggcgtc gatctgggcc
     4621 tgcagttcgt cgcgtttggc cagcagggcg cggttcttcg gggccagctc gttgatcacg
     4681 gcttcggcac cggcccagaa ctggtcggcg gcgatgccgg tgcccgggat ggcttcgttg
     4741 ttgatgaagt cgtaaagggc cttggcgacc tgcagaccac ctacttgaac gcgctcagtc
     4801 attgcttgcc tcactatgat gctagacagg gccggaaggc catgtagtaa gagtcggcgg
     4861 atactacatg actcattcgg aaaaatcagt cacaaactgc gcccgcctgc ccggcggcgg
     4921 cccctatact ccgggcattc ttgcgcctgt ggggtagcca tgcc
//
LOCUS       DATIHC010000371         5616 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29037, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000371 DATIHC010000000
VERSION     DATIHC010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5616
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29037"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..189
                     /locus_tag="VLF16_05935"
     CDS             <1..189
                     /locus_tag="VLF16_05935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HSX70454.1"
                     /translation="VLMTSLGVIVGLNNDLTGVTQDFNVKTFRTFEYFAIAAVLYYLI
                     AKTIVLAARLMAWRLFRY"
     gene            203..853
                     /locus_tag="VLF16_05940"
     CDS             203..853
                     /locus_tag="VLF16_05940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017133533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HSX70455.1"
                     /translation="MFETSLTSNDLLFMLEGAWITLKLTAGAMLIGTLAGVVFGLLRA
                     TLPRVTLPLAWVLDVFRSVPLLIQFVLFNALKSIAGIDISAFTVGCIVLGVYAASFCT
                     EIVRGGVLAVPPNLRRASRSLGMSYWQDLRHIVLPIATRVAFPGWLNLVLSVMKDTAL
                     VMWIGIVELLRASQTIVTRIQEPLLVLCIAGLIYYVMSLVVAQLGARLEKRWQEND"
     gene            846..1568
                     /locus_tag="VLF16_05945"
     CDS             846..1568
                     /locus_tag="VLF16_05945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017521734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HSX70456.1"
                     /translation="MIEIDNVHKSFGDLEVIKGVSLTVNKGEVVSIIGGSGSGKSTLL
                     MCVNGLEPIQKGSIRVDGTEVHAPGTDLNKLRQKIGIVFQQWNAFPHLTVLENVMLAP
                     RKVLGLSKEEAEAMAVKQLTHVGLAEKLKVFPSKLSGGQQQRMAIARALAMSPDYMLF
                     DEATSALDPQLVGEVLDTMRLLAEEGMTMILVTHEIRFARDVSDRVAFFRNGLVHEIG
                     SPDQVIGNPQRPETADFLKSVN"
     gene            1580..2617
                     /locus_tag="VLF16_05950"
     CDS             1580..2617
                     /locus_tag="VLF16_05950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020289095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline racemase family protein"
                     /protein_id="HSX70457.1"
                     /translation="MRSSKVIHVVSCHAEGEVGDVIVGGVAPPPGDTLWEQSRWIARD
                     EELRNFVLNEPRGGVFRHVNLLVPAKDPRAQMAWIIMEPADTPPMSGSNSLCVSTVLL
                     DSGILPMTEPETRLVLEAPGGLIEAVAQCEGGKVQRVEVKNVPSFADKLDAMIEVEGL
                     GSLKVDTAYGGDSFVIADARALGFSLTADEAADLVATGLKITRAANEQLGFVHPLNKD
                     WAHISFCQIAAPVERIDGVLTAANAVVIRPGKIDRSPCGTGCSARMAVLHAKGQMQAG
                     ERFIGRSIIGSEFHCRIDSLTEVAGRPAIYPCLSGRAWITGTHQHLLDPSDPWPGGYR
                     LSDTWPVEPKL"
     gene            2761..3696
                     /locus_tag="VLF16_05955"
     CDS             2761..3696
                     /locus_tag="VLF16_05955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008438733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HSX70458.1"
                     /translation="MSSTIFTGTIPALMTPCTAERKPDFDALVRKGRELIQAGMSAVV
                     YCGSMGDWPLLTEAERQEGVARLVAAGIPTIVGTGAVNSREAVSHAAHAAKVGAHGLM
                     VIPRVLSRGASPAAQEAHFAAILEAAPKLPAVIYNSPYYGFATRAELFFKLRRQYPNL
                     IGFKEFGGAADMRYAAEHITSQDDQVILMAGVDTQVVHGFVNCGAAGAITGIGNALPR
                     EVLQLVELSKQAAKGDAVARRRAQELSEALNVLSSFDEGCDLVLYYKYLMVLNGDQEY
                     ALHFNETDVLSDAQRNYAETQYKLFRQWYANWSAA"
     gene            3785..5368
                     /locus_tag="VLF16_05960"
     CDS             3785..5368
                     /locus_tag="VLF16_05960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase (NADP(+))"
                     /protein_id="HSX70459.1"
                     /translation="MPATIGHNFIAGGRSAAGEVILQSLDATTGEALPYRFHQATEAE
                     VEAAARAAEAAYPAYRTLSPERRAQFLDAIAEQIDALGDDFVQLVCRETALPAARIQG
                     ERGRTSGQMRLFAKVLRRGDFLGARIDRALPERQPLPRPDLRQYRTGVGPVAVFGASN
                     FPLAFSTAGGDTAAALAAGCPVVFKAHSGHMATAELVAQAILRAAEQTGMPAGVFNMV
                     YGGGVGEWLVKHPAIQAVGFTGSLRGGRALCDMAAARPHPIPVFAEMSSINPVLMLPA
                     ALAARGEKIARELADSVVQGCGQFCTNPGLVIGIASPAFSVFTASLIAEIGQRPPQTM
                     LNTGTLSSYEHGLAALRAHPGVKHLAGQPQEGRQARPQLFQADVALLLNGDELLQEEV
                     FGPVTVVVEVADKAELIRSLHGLRGQLTATLTAEPADLEAHGDLLPLLEQKVGRVLFN
                     GYPTGVEVCDAMVHGGPYPATSDARGTSVGSLAIDRFLRPVCYQNCPDPLLPDALKNA
                     NPLGLARLVDGITTRESLA"
BASE COUNT          894 a         2027 c         1809 g          886 t
ORIGIN      
        1 gtgctgatga cctcgctggg ggtgatcgtc ggactcaaca acgacctcac cggcgtcacc
       61 caggacttca acgtgaagac cttccgcacc ttcgagtact tcgccatcgc ggcggtgctc
      121 tattacctga tcgccaagac catcgtgctc gccgcacgcc tgatggcctg gcgcctgttc
      181 cgctactgag ggaggactga gcatgttcga aaccagcctc acctccaacg acctgctgtt
      241 catgctggaa ggtgcctgga tcaccctcaa gctgaccgcc ggcgccatgc tgatcggcac
      301 cctggccggc gtcgtcttcg gcctgctgcg cgccaccctg cctcgcgtca ctctgccgct
      361 ggcctgggtg ctcgacgtgt tccgtagcgt gccgctgctg atccagttcg tcctgttcaa
      421 tgccctcaag agcatcgccg ggatcgacat cagcgccttc accgtcggct gcatcgtgct
      481 cggcgtgtat gccgcgtcct tctgcaccga gatcgtccgc ggcggcgtgc tcgccgtgcc
      541 gccgaacctg cgccgcgcct cgcgctcgct gggtatgagc tactggcagg acctgcgcca
      601 catcgtgctg ccgatcgcca cccgggtggc cttccccggc tggctcaacc tggtgctcag
      661 cgtgatgaag gacaccgcgc tggtcatgtg gatcggcatc gtcgagttgc tgcgggcctc
      721 gcagaccatt gtcacgcgca ttcaggagcc gctgctggtg ctctgcatcg cgggactcat
      781 ctactacgtc atgagcctgg tggtggccca gctgggcgcc cggctggaga aaaggtggca
      841 ggaaaatgat tgagatcgac aacgtccaca aatccttcgg cgacctcgag gtcatcaagg
      901 gcgtcagcct gacggtgaac aagggcgagg tggtgtcgat catcggcggc tccggctccg
      961 gcaagtcgac cctgctgatg tgcgtcaacg gcctggagcc gatccagaag ggcagcatcc
     1021 gcgtcgacgg caccgaggtg cacgcgccag gcaccgacct caacaagctg cggcagaaga
     1081 tcggcatcgt gttccagcag tggaacgcct tcccgcacct gaccgtgctg gagaacgtca
     1141 tgctggcgcc gcgcaaggtg ctcggcctga gcaaggagga ggccgaggcc atggccgtca
     1201 agcagctcac ccacgtgggc ctggcagaga agctcaaggt gttccccagc aagctctccg
     1261 gcggccagca gcagcgcatg gcgattgccc gcgcgctggc catgagcccg gactacatgc
     1321 tgttcgacga ggccaccagt gccctcgatc cgcagctggt gggcgaggtg ctggacacca
     1381 tgcgcctgct cgccgaggaa ggcatgacca tgatcctggt gacccacgag atccgcttcg
     1441 cccgcgacgt gtccgaccgc gtggcgttct tccgcaacgg tctggtgcac gagatcggct
     1501 cgcccgacca ggtcatcggc aatccgcagc ggccggaaac cgccgacttc ctcaaatcgg
     1561 tcaactaagg aggcacgccg tgcgttcgag caaggtcatc catgtggtca gctgccacgc
     1621 cgagggcgag gtcggcgacg tcatcgtcgg cggcgtcgcg ccgccgccgg gcgatactct
     1681 ctgggaacag tcgcgctgga tcgcccgcga cgaggagctg cgcaacttcg tgctgaacga
     1741 gccgcgcggc ggcgtgttcc gccacgtcaa cctgctggtg ccggccaagg acccgcgggc
     1801 gcagatggcc tggatcatca tggagccggc cgacacgccg cccatgtccg gctccaactc
     1861 gctgtgcgtg tccaccgtgt tgctcgacag cggcatcctg ccgatgaccg agccggagac
     1921 gcgtctggtg ctggaagcgc ccggcggcct gatcgaggcc gtggcccagt gcgagggcgg
     1981 caaggtgcag cgggtggagg tgaagaacgt gccgtccttc gccgacaaac tggacgccat
     2041 gatcgaggtc gaaggcctcg gcagcctcaa ggtcgacacc gcctatggcg gcgacagctt
     2101 cgtcatcgcc gatgcgcgcg ccctgggctt ctcgctgacc gccgacgagg ccgccgacct
     2161 ggttgccacc ggcctgaaga tcacccgcgc ggccaacgag cagctcggct tcgtgcatcc
     2221 gctgaacaag gactgggcgc acatctcgtt ctgccagatc gccgcgccgg tggagcgcat
     2281 cgacggcgtg ctgaccgccg ccaacgcggt ggtgatccgc cccggcaaga tcgaccgctc
     2341 gccctgcggc accggttgct cggcgcgcat ggcggtgctg cacgccaagg gccagatgca
     2401 ggccggcgaa cgctttatcg gccgctcgat catcggctcc gaattccact gccgcatcga
     2461 ctcgctgacc gaagtcgccg ggcgcccggc catctatccc tgcctgtccg ggcgggcctg
     2521 gatcaccggc acccaccagc acctgctcga cccgagcgac ccctggccgg gcggttaccg
     2581 cctctcggat acctggccgg tcgagccgaa gctgtaacac ctgttttttg cagatttgaa
     2641 aaccgccgca cgccggcgca ctgaaccggg cccaggccca acccatggaa acaacggccg
     2701 atgccggccg ccatctttcg tatacgaaat actttgactc tgccctggga ggcaaacagc
     2761 atgagcagca ccatcttcac cggcaccatc cccgccctga tgacgccctg caccgccgag
     2821 cgcaaaccgg acttcgacgc cctggtgcgc aagggccgcg agctgatcca agccggcatg
     2881 agcgccgtgg tctactgcgg ctccatgggc gactggccgt tgctcaccga ggccgagcgc
     2941 caggagggcg tggcgcgcct ggtcgccgcc ggcatcccga ccatcgtcgg caccggtgcg
     3001 gtgaacagcc gcgaggcggt atcccacgcc gcccacgccg ccaaggtcgg cgcccatggc
     3061 ctgatggtca tcccccgcgt gctgtcccgc ggcgcctcgc cggccgccca ggaagcgcac
     3121 ttcgccgcca ttctcgaggc ggcgccgaag ctgccggcgg tgatctacaa cagcccgtac
     3181 tacggcttcg ccacccgcgc cgagctgttc ttcaagctgc gtcgccagta ccccaacctg
     3241 atcggcttca aggagttcgg cggcgccgcc gacatgcgct acgccgccga gcacatcacc
     3301 tcgcaggatg accaggtgat cctcatggcc ggcgtcgaca cccaggtggt gcatggcttc
     3361 gtcaattgcg gcgcggccgg cgccatcacc ggtatcggca acgccctgcc gcgcgaagtg
     3421 ctgcagctgg tcgaactgag caagcaggcc gccaagggcg acgccgtcgc ccgtcgccgc
     3481 gcccaggagc tgtccgaggc gctgaacgtg ctgtcgtcct tcgacgaggg ctgcgacctg
     3541 gtcctctact acaagtacct gatggtgctg aacggcgacc aggaatacgc cctgcacttc
     3601 aacgagaccg acgtgctcag cgacgcccag cgaaactacg ccgagaccca gtacaagctg
     3661 ttccgccagt ggtacgccaa ctggtcggcc gcctgatcgc cgtgcttcgg ccgggtgctt
     3721 ccaacgcacc cggccgatgc gcaatggcaa cgctgatttc ataggccccg acaggagcta
     3781 aaccatgccc gccaccatcg gccacaactt catcgccggc ggccgcagtg ccgccggtga
     3841 ggtcatcctg cagagcctcg acgccactac cggcgaggcg ctgccctacc gcttccacca
     3901 ggccaccgag gccgaggtgg aagccgccgc ccgcgccgcc gaggccgcct acccggccta
     3961 tcgcaccctg agcccggagc gccgcgccca gttcctcgac gccatcgccg agcagatcga
     4021 tgccctcggc gacgacttcg tccagctggt gtgccgcgag accgccctgc cggccgcgcg
     4081 catccagggc gagcgcggtc gcaccagcgg ccagatgcgc ctgttcgcca aggtgctgcg
     4141 ccgcggcgac ttcctcggcg cgcgcatcga ccgcgccctg cccgagcgcc agccgctgcc
     4201 gcgcccggat ctgcgccagt accgcaccgg cgtcggcccg gtggcggtgt tcggtgccag
     4261 caacttcccg ctggccttct ccaccgctgg tggcgacacc gccgccgcgc tggccgccgg
     4321 ctgcccggtg gtgttcaagg cccacagcgg ccacatggcc accgccgagc tggtggccca
     4381 ggcgatcctc cgcgccgccg agcagaccgg catgccggcc ggcgtgttca acatggtcta
     4441 cggcggcggg gtcggcgagt ggctggtcaa gcacccggcg atccaggcgg tcggcttcac
     4501 cggctcgctg agaggcggcc gcgccctgtg cgacatggct gccgcgcgcc cacatcccat
     4561 cccggtgttc gccgagatga gctcgatcaa cccggtgctg atgctgccgg ccgccctcgc
     4621 cgcccgcggc gagaagatcg ctcgcgagct ggccgactcg gtggtgcagg gctgcggcca
     4681 gttctgcacc aacccgggcc tggtcatcgg catcgcctcg ccggccttca gcgtgttcac
     4741 cgccagcctg atcgccgaga tcggccagcg cccgccacag accatgctca acaccggcac
     4801 cctgagcagc tacgagcacg gcctggccgc actgcgcgcc cacccggggg tgaagcacct
     4861 ggccggccag ccgcaggaag gccgccaggc ccggccgcag ctgttccagg ccgatgtcgc
     4921 gctgctgctc aacggcgacg agctgctgca ggaagaagtg ttcggtccgg tgaccgtggt
     4981 ggtggaagtg gccgacaagg ccgagctgat ccgctccctg catggcctgc gcggccagct
     5041 gaccgccacc ctgaccgccg agccggccga tctggaagcc cacggcgacc tgttgccgct
     5101 gctggagcag aaggttggcc gggtgctgtt caacggttat ccgaccggag tggaagtgtg
     5161 cgatgccatg gtccacggcg gcccctaccc ggccacttcg gatgcacgcg gcacctcggt
     5221 cggcagtctg gccatcgacc gcttcctgcg cccggtgtgc taccagaact gcccggaccc
     5281 cctgctgccg gacgccctga aaaacgccaa cccgctgggc ctggcccggc tggtcgacgg
     5341 catcaccacg cgggaatcgc tggcctgaaa cacattgtgt cggctcagac accagcgctt
     5401 ctctccctca gccccggttc gccggggctt tttttcggtg agaaggatga atccgcgccc
     5461 tgcgccatgt agcccggatg caagccggga cttcgagggc tgccttaccc ggattacatc
     5521 cgggctaccg tctggggtga gggtgtcggg cgactcggag ctgccaggcc cgtagcccgg
     5581 atgcgatccg ggagcggagt cgcctgttcc cggatt
//
LOCUS       DATIHC010000372         2771 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36163, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000372 DATIHC010000000
VERSION     DATIHC010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2771
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36163"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..252)
                     /locus_tag="VLF16_05965"
     CDS             complement(<1..252)
                     /locus_tag="VLF16_05965"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249340.1"
                     /note="TrpG; with TrpE catalyzes the formation of
                     anthranilate and glutamate from chorismate and glutamine;
                     TrpG provides the glutamine amidotransferase activity;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate/aminodeoxychorismate synthase
                     component II"
                     /protein_id="HSX70460.1"
                     /translation="MLLMIDNYDSFTYNVVQYLGELGADVHVIRNDELSIAEIEALNP
                     ERIVVSPGPCTPTEAGVSLEVIKHFAGKLPILGVCLGHQS"
     gene            complement(264..1742)
                     /gene="trpE"
                     /locus_tag="VLF16_05970"
     CDS             complement(264..1742)
                     /gene="trpE"
                     /locus_tag="VLF16_05970"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HSX70461.1"
                     /translation="MNREEFLRLAADGYNRIPLAFETLADFDTPLSIYLKLADTPNSY
                     LLESVQGGEKWGRYSIIGLPARTVLRVHGHHVSVRVDGVEVESLESEDPLAFVEQFKA
                     RYKVPTLSGLPRFNGGLVGYFGYDSVRYVEKKLAQCPNPDPLGTPDILLMVSDAVVVF
                     DNLAGKMHAIVLADPSQADAFEQGQAQLRELLNKLRQPITPRLGVDLSKPAGKEPDFV
                     SSFKRDDYEAAVGAIKEYILAGDCMQVVISQRMSIPFQAAPIDLYRALRCINPTPYMY
                     FFNFGDFHVVGSSPEVLVRVEDNLVTVRPIAGTRPRGATEEADIELEKDLLSDAKEIA
                     EHLMLIDLGRNDAGRVSATGTVKVTEQMVIERYSNVMHIVSNVTGHLKEGLSAMDALR
                     AILPAGTLSGAPKVRAMEIIDELEPVKRGVYGGAVGYLAWNGNMDTAIAIRTAVIKDG
                     ELHVQAGAGIVADSQPALEWEETLNKRRAMFRAVSLAEQSVE"
     gene            complement(1814..2587)
                     /locus_tag="VLF16_05975"
     CDS             complement(1814..2587)
                     /locus_tag="VLF16_05975"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017517313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008967 - phosphoglycolate phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HSX70462.1"
                     /translation="MFDLDGTLVDSVPDLAAAIDRMLVQLGRPAAGVERVREWVGNGA
                     RVLVRRALAGDIEHTEISDADTEQALELFNEAYSGSHALSTVYPGVTSTLKWLKKQGV
                     ELALITNKPERFVAPLLDEMKLGRYFRWIVGGDTLPQQKPDPAALLFVMRLANVEPER
                     ALFIGDSRNDVLAARAASVPCVALSYGYNHGRPIAEENPTRVLDDLRQLLPGCALEDA
                     ALMSPNSSDYPPHRDSLVVVASKQWMKVIKALARWRWRA"
     gene            complement(2626..>2771)
                     /locus_tag="VLF16_05980"
     CDS             complement(2626..>2771)
                     /locus_tag="VLF16_05980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014851562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HSX70463.1"
                     /translation="GGVNVKNIREIAEAGADTFVAGSAIFNQPDYKAVIDAMRAELAQ
                     VRA"
BASE COUNT          459 a          898 c          941 g          473 t
ORIGIN      
        1 gctctggtgg cccaggcaca cgccgaggat cggcagcttg ccggcgaagt gcttgatcac
       61 ttccagcgac acaccagcct cggtcggcgt gcacgggccg ggcgagacca cgatgcgctc
      121 ggggttcagc gcctcgatct cggcgatgct cagctcgtcg ttgcggatca cgtggacatc
      181 ggcacccagc tcgcccaggt actgcaccac gttgtaggta aaggagtcgt aattgtcgat
      241 catcagcagc atggttgggc cccttactct acggactgtt cggcgaggct gaccgcgcgg
      301 aacatggcgc ggcgcttgtt cagggtttct tcccactcca gggccggctg cgagtcggca
      361 acgatgccgg cgccagcctg cacgtgcagc tcaccgtcct tgatcaccgc ggtacgaatg
      421 gcgatggcgg tgtccatgtt gccgttccac gccaagtaac ccacggcgcc gccgtagacc
      481 ccgcgcttga ccggctccag ctcgtcgatg atctccatcg cgcgcacctt cggcgcaccg
      541 gacagggtgc cggccggcag gatggcacgc agggcgtcca tggccgacag gccctctttc
      601 agatgccccg tcacgttgga gacgatgtgc atcacgttgg agtagcgctc gatgaccatc
      661 tgctcggtga ccttcaccgt gccggtggcc gacacgcgac cggcatcgtt gcggcccagg
      721 tcgatcagca tcaggtgctc ggcgatctcc ttggcgtcgg acagcaggtc cttctccagc
      781 tcgatatcgg cctcctcggt ggcgccacgc ggacgggtgc cggcgatcgg ccgtacggtg
      841 accaggttgt cctcgacgcg caccagcacc tccggcgagc tgcccaccac gtggaagtcg
      901 ccgaagttga agaagtacat gtagggcgtc gggttgatgc agcgcagcgc gcggtacagg
      961 tcgatcggtg cggcctggaa cgggatagac atgcgctggg agatcaccac ctgcatgcag
     1021 tcgccggcca ggatgtattc cttgatcgcg ccgaccgcgg cctcgtagtc gtcacgcttg
     1081 aagctggaaa cgaagtccgg ctccttgccg gccggcttgc tcaggtccac gcccaggcgc
     1141 ggggtgatcg gctggcgcag cttgttcagc agctcgcgca gctgggcctg gccctgctcg
     1201 aaggcatcgg cctggctcgg gtcggccaga acgatggcgt gcatcttgcc ggccaggttg
     1261 tcgaagacga cgaccgcatc ggagaccatc agcaggatgt ccggggtgcc cagcggatca
     1321 ggattcgggc actgcgccag cttcttctcc acgtagcgca cgctgtcgta gccgaagtag
     1381 ccgaccaggc cgccgttgaa gcgcggtaga ccgctcaagg tcggcacctt gtagcgcgcc
     1441 ttgaactgct cgacgaaggc cagcgggtct tcgctttcca ggctttccac ctcgacgccg
     1501 tcgacacgca cgctgacgtg gtgaccatgc acgcgcagca cggtgcgcgc cggcaggccg
     1561 atgatcgagt agcggcccca cttctcgccg ccctgcacgg attccagcag ataggagttg
     1621 ggggtgtcgg ccagcttgag gtagatcgac agcggggtgt cgaagtcagc cagggtttcg
     1681 aaagccagcg gaatgcggtt atagccgtcg gcggccaaac gcaggaattc ttcgcggttc
     1741 atgaaaaaca gcctcgtgga ggaggaaaaa cgggagtcgg gcaaacgcgc cggaaccagc
     1801 cggccaggag aagtcaggcg cgccagcgcc agcgggccag ggccttgatg actttcatcc
     1861 attgtttgct ggcaactacc acgaggctgt ctcgatgcgg tgggtaatcg gaggagttcg
     1921 gcgacattag cgcagcgtcc tccagggcgc aaccgggcag cagctggcgc aggtcgtcga
     1981 gcacgcgagt cgggttttcc tcggcgatcg gccggccgtg gttgtagccg tagctcagcg
     2041 ccacgcaggg cacgctggcg gcgcgggcgg ccagcacgtc gttgcgcgag tcgccgatga
     2101 acagcgcacg ctcgggctcg acgttggcca ggcgcatgac gaacagcagc gccgccgggt
     2161 cgggcttctg ctggggcagg gtgtcgccac cgacgatcca gcggaagtag cggcccagct
     2221 tcatctcgtc cagcagcggc gccacgaagc gctcgggctt gttggtgatc agcgccagct
     2281 ccacgccctg cttcttcagc cacttgaggg tagaggtgac gcccgggtac acggtgctca
     2341 gcgcatggct gccggagtag gcctcgttga acagctccag ggcctgctcg gtgtcggcgt
     2401 cgctgatctc ggtgtgctcg atgtcgccgg ccagggcgcg acgcaccagc acgcgggcgc
     2461 cgttgccgac ccactcgcgc acgcgctcga cgccggccgc cgggcgaccg agctgcacca
     2521 gcatgcggtc gatggcggcg gccaggtcgg gcaccgaatc caccagggtg ccgtccaggt
     2581 cgaacatcac caggcgcggc agactccctt ggaacaactc gtggatcacg cgcgcacctg
     2641 ggccagttcg gcacgcatgg cgtcgatcac cgccttgtag tccggctggt tgaagatggc
     2701 cgagccggcg acgaaggtgt cggcgcccgc ctcggcgatc tcgcggatgt ttttcacgtt
     2761 gaccccgccg t
//
LOCUS       DATIHC010000373         5098 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33747, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000373 DATIHC010000000
VERSION     DATIHC010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5098
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33747"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1261
                     /locus_tag="VLF16_05985"
     CDS             <1..1261
                     /locus_tag="VLF16_05985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016492692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSX70464.1"
                     /translation="TMTDAASSTAIIIGAGHAGGELAIALRNEGWEGRILLLGEEAHL
                     PYHRPPLSKAYLAGSVEKSSLSIRPQAAYDKANVEFRGGVRVIAIDRQNRTLQLANGQ
                     HLDYDKLAIATGGRARPLAVPHAADAELCANFHYLRTLDDVERIREQMSAGKRLTIVG
                     GGYIGLEVAASAIAQGLQVTVLEALPRVLQRVTAAELSAYYERKHREAGVDIRTHVQV
                     ADLEVTGAAVSAVLCADGTRLETDLVVVGIGLIANTELAAEAGLDIDNGILVDEHART
                     SDPHIFAAGDCTNHPNALLGRRLRLESVPNALEQSRVAAAGMAGKDKRYASVPWFWSD
                     QYELKLKMVGLAEGFERSVLRGDPQSDSFSAFYLKDGKVLAADTVNRPQDFIAAKRLV
                     AEGIAVTAEQLADDSKPLKELLPTPAA"
     gene            complement(1380..3917)
                     /locus_tag="VLF16_05990"
     CDS             complement(1380..3917)
                     /locus_tag="VLF16_05990"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSX70465.1"
                     /translation="MNGNISAKKESDLGDARKIATPLLLRKGLQVFLRNGRQEPLYVV
                     IDPASQLQWELETPQFFILEMLQVDEEFVAVAASYERRFSQMLSRGDLDALLVSLIDQ
                     RLLGMAAAAHPLVAQYREQLQEDLQRLLEEKVARFRDKATPPARRQEPAPTAIGAAPI
                     QAAPIAPSRPSGAANEGARGDGEPLQAGVRDSAGMDDTLQIPVLHLFNPHRLLKAMQG
                     WTEPLKYGVFLLPLLFGLALGIVLNNFDQAHLDASTRLIGMGALGHVFFSLFTVNLLC
                     TLTLALTAQKYRGTVYSLSLAFMLGFLPRFLPRIRHLVGLSRRERLWLHGGPVLMRLA
                     LFSLGVFTWYLTRASNGLLPVAGLALAITSAVALLLTLNPLSKSSGYHLVAVLVDEPQ
                     LRGKAFKALLGRIKGNAYREANDTALMAYGLASILYSVLLFVIALLLVGSWLKFNFGG
                     TGVLAAVVLIGYLSLLTYRKFRSANEMYERAVQYERWKRRRLPDNVEQKVGTRPANKL
                     ARYSGRVFALSLLICLFLPYPYEPGGAFVILPTEQQQVASDIGGIVTEVLVEGGEQVK
                     AGQVLARLATGDYAAQVKIAEARIAEEQAIVAELKARPRVEEVEVAQRSLEMARTQTQ
                     FSQTNHQRHLTLLAKGGVSAQQADQARRQYEVDLMAVQVAEANLTLARVGATPDSIAA
                     AEAQVQRWRGERDLYLAKIERSQLRAPMDGKLITLLLKQKVGKFQPPGEPFAVVEKAE
                     RVFAEIEVPETEIGYVQPGAVLKVKPLAYSDRLFDGTVTQIDANVVEKTAGKYVKVLT
                     IIDNPAGELKSGMTGYAKSAGETLPVWKAFTRAIFRFIDVELWSWIP"
     gene            complement(3914..>5098)
                     /locus_tag="VLF16_05995"
     CDS             complement(3914..>5098)
                     /locus_tag="VLF16_05995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70466.1"
                     /translation="KIPRELGFRGMCVYPGSAGRKPSLFVSTWSPAKGPGPLLLRSED
                     GLNFTPTCEPGLMGLPVTTIRTMVSFKGRMYTTPAGSRGGNPNVSSHSIVYESAAPEE
                     GGWEAVSDFGFGDEGNKTIFEMCPFGDHLYVGTFNLEGYQVWRSTCETKPYHWERVIA
                     DGAGRGPLNQSVLSMYPFKGALYVGSAIQGGGIDRQNGVGPAPPELIRIRPDNGWDLL
                     VGDARMTEQGWKEPLSGYMAGFDNFFNGYFWRMAEHEGWLYLSTFDWSGLLGYARRDS
                     WPEPFLNIINGVGEQFIFERQSGFDLYRSYDGENWVPVTTDGMGNPYNIGMRTIVSSP
                     YGLFLGAANPFGPKVWPLGGDRYIDNPRGGCEVFFAPRKQMTSAAPSAGIRDRSTGSP
                     VL"
BASE COUNT          823 a         1746 c         1743 g          786 t
ORIGIN      
        1 caccatgaca gacgcagctt cctccaccgc catcatcatc ggcgccggcc atgccggcgg
       61 cgaactggcc atcgccctgc gcaacgaggg ctgggagggg cgcatcctgc tgctcggcga
      121 agaagcgcac ctgccctacc accgcccgcc gctgtccaag gcctacctgg ccggcagcgt
      181 ggaaaagagc agcctgtcga tccgcccgca ggccgcgtat gacaaggcca acgtcgagtt
      241 ccgcggcggc gtgcgcgtca tcgccatcga ccgccagaac aggacgctgc agctcgccaa
      301 cggccagcac ctggactacg acaagctggc catcgccacc ggcggtcgcg cccgccccct
      361 ggccgtgccc cacgcggcgg atgccgagct gtgcgccaac ttccactacc tgcgcaccct
      421 ggacgacgtc gagcgcatcc gcgagcagat gagcgcgggc aagcgcctga ccatcgtcgg
      481 cggcggctac atcggcctgg aagtggccgc ctcggccatc gcccagggcc tgcaggtcac
      541 cgtgctggaa gccttgccgc gggtgctgca gcgcgtcacc gccgcggagc tctcagccta
      601 ttacgagcgc aagcaccgcg aggcgggcgt ggacatccgc acccacgtgc aggtcgcgga
      661 cctggaggtg acgggcgccg cggtcagcgc cgtgctgtgc gccgacggca cgcgcctgga
      721 aaccgacctg gtggtggtcg gcatcggcct gatcgccaac accgagctgg ccgccgaggc
      781 cggactggac atcgacaacg gcattctggt cgacgaacac gcccgcacca gcgatccgca
      841 tatcttcgcc gccggcgact gcaccaacca ccccaacgcc ctgctcggcc gccgcctgcg
      901 cctggagtcg gtacccaacg ccctggagca gtcgcgcgtc gccgccgccg gcatggccgg
      961 caaggacaag cgctatgcct cggtgccctg gttctggtcc gaccagtacg agctgaagct
     1021 gaagatggtc ggcctggccg aaggcttcga gcgctcggtg ctgcgcggcg acccgcagag
     1081 cgacagcttc agcgccttct acctcaagga cggcaaggtg ctcgccgccg acacggtgaa
     1141 ccgcccgcag gacttcatcg ccgccaagcg cctggtggcc gagggtatcg ccgtgacggc
     1201 cgagcagctg gccgatgaca gcaagccgct caaggagctg ctgccgacgc cagcggcctg
     1261 atcgcacaca tgaaaacacc ggccgaggcc ggtgtttttc tgtagcccgg atgcaatccg
     1321 ggagcggtgt tcgccggcct tcccggattg catccgggct acatcagcct tggctcagct
     1381 cagggaatcc acgaccacag ctccacgtcg atgaagcgga agatcgcccg ggtgaaggcc
     1441 ttccataccg gcagggtctc gccggcggac ttggcgtagc cggtcatgcc ggacttcaac
     1501 tcgcccgccg ggttgtcgat gatggtcagc accttgacgt acttgccggc ggtcttctcc
     1561 accacgttgg cgtcgatctg cgtcacggtg ccgtcgaaca gccggtcgga ataggccagc
     1621 ggcttgacct tgagcaccgc gcccggctgc acgtagccga tctcggtctc cggcacctcg
     1681 atctcggcga acacccgctc ggccttctcc accacggcga agggctcgcc gggcggctgg
     1741 aacttgccga ccttctgctt gagcaacagg gtgatcagct tgccgtccat cggcgcgcgc
     1801 agctgcgagc gctcgatctt cgccaggtac aggtcgcgct cgccgcgcca gcgctgcacc
     1861 tgcgcctcgg cggcggcgat ggagtccggc gtggcgccga ccctggccag cgtcaggttg
     1921 gcctcggcga cctggaccgc catcaggtcc acctcgtact ggcggcgggc ctggtcggcc
     1981 tgctgggcgg agacaccgcc cttggccagc agggtgaggt ggcgctggtg gttggtctgg
     2041 ctgaactgag tctgggtgcg cgccatctcc aggctgcgct gggccacctc gacctcctcg
     2101 acgcgcggcc gcgccttcag ctcggcgacg atggcctgtt cctcggcgat gcgcgcctcg
     2161 gcgatcttca cctgcgcggc gtagtcgccg gtggccaggc gggccagcac ctgaccggcc
     2221 ttgacctgtt cgccaccttc caccagcact tcggtgacga tgccaccgat gtcactggcg
     2281 acctgctgct gctcggtcgg caggatgacg aaggcgccgc ccggctcata gggatagggc
     2341 aggaacaggc agatcagcag cgacagggcg aacacccgcc cgctatagcg cgccagcttg
     2401 ttggccgggc gggtgccgac cttctgctcg acgttgtccg gcaggcggcg gcgcttccag
     2461 cgctcgtact gcacggcgcg ctcgtacatc tcgttggccg acctgaactt gcggtaggtc
     2521 agcaggctca ggtagccgat cagcaccacc gcggccagca cgccggtgcc accgaagttg
     2581 aatttcagcc agctgccgac cagcagcagg gcgatgacga acagcagcac cgaatagagg
     2641 atggaggcca gcccgtaggc catcagcgcg gtgtcgttgg cctcgcggta ggcgttgccc
     2701 ttgatgcgcc cgagcagcgc cttgaaggcc ttgccacgca gttgcggctc atcgaccagc
     2761 acggcgacca gatggtagcc gctgctcttc gacagcgggt tgagggtcag cagcagcgcc
     2821 accgcgctgg tgatcgccag ggccaggccg gcgaccggca gcaggccatt ggaggcacgg
     2881 gtcaggtacc aggtgaacac acccaggctg aacagcgcca ggcgcatcag caccggcccg
     2941 ccgtgcagcc acaggcgctc gcggcggctc aggccgacca ggtggcggat gcgcggcaaa
     3001 aagcgaggca ggaagccgag catgaaggcc agggacaggc tgtataccgt gccgcggtac
     3061 ttctgcgcgg tcagcgccag ggtcagggtg cacagcaggt tgacggtgaa caggctgaag
     3121 aacacatggc cgagagcgcc catgccgatc agccgggtgc tggcgtccag gtgcgcctgg
     3181 tcgaagttgt tgagcacgat gcccagggcc aggccgaaca gcagcggcag caggaacaca
     3241 ccgtacttca gcggctcggt ccagccctgc atggccttga gcagacggtg cgggttgaac
     3301 aggtgcagca ccggaatctg cagcgtgtcg tccatgcccg ccgagtcgcg cacgccggcc
     3361 tgcagcggct cgccgtcacc gcgcgcccct tcgttggcgg cgccgctcgg acggctcggc
     3421 gcgatgggcg cggcctgtat cggcgcggca ccgatcgctg tcggtgccgg ttcctgacga
     3481 cgcgccggcg gcgtggcctt gtcgcggaag cgcgcgacct tctcctccag caggcgctgc
     3541 agatcctcct gcaactgctc gcggtactgc gccaccagtg gatgggcggc ggcggccatg
     3601 ccgagcaggc gctggtcgat caggctgacc agcagcgcgt cgaggtcgcc acggctgagc
     3661 atctgcgaga aacggcgctc gtagctggcg gcgacggcga cgaactcttc gtcgacctgc
     3721 agcatctcga ggatgaagaa ctgcggcgtc tccagctccc actgcagctg gctggccgga
     3781 tcgatcacca cgtacagcgg ctcctgccgg ccgttgcgca ggaacacctg caggcccttg
     3841 cgcagcagca gcggcgtggc gatcttgcgg gcgtcgccga ggtcggactc tttcttcgcg
     3901 gaaatattgc cgttcatagc acggggcttc ctgtggaccg gtcacggata ccggcgctgg
     3961 gtgcggccga ggtcatctgt ttgcgcggcg cgaagaacac ctcgcagccg ccgcgcgggt
     4021 tgtcgatata gcgatccccg cccagcggcc agaccttggg gccgaagggg ttggcggcgc
     4081 cgaggaacag gccgtagggc gaggagacga tggtgcgcat gccgatgttg taggggttgc
     4141 ccatgccgtc ggtggtcact ggcacccagt tctcgccgtc gtagctgcgg tacaggtcga
     4201 agcccgactg gcgctcgaag atgaattgct cacccacgcc gttgatgatg ttgaggaagg
     4261 gctccggcca actgtcgcgc cgggcatagc cgagcaggcc gctccagtcg aaggtcgaca
     4321 ggtagagcca gccctcgtgc tcggccatgc gccagaagta gccgttgaag aagttgtcga
     4381 agccggccat gtagccggac agcggttcct tccagccctg ctcggtcatg cgtgcgtcgc
     4441 ccaccagcag gtcccagccg ttgtccggac ggatgcggat caactcgggt ggcgccgggc
     4501 ccacgccgtt ctgccggtcg atgccgccgc cctggatggc actgccgaca tacagcgcgc
     4561 ccttgaacgg atacatgctc agcaccgact ggttgagcgg gccgcggccg gcgccgtcgg
     4621 cgatcacccg ttcccagtgg tagggcttgg tctcgcaggt gctgcgccag acctgataac
     4681 cctcgaggtt gaaggtgccg acatagaggt ggtcgccgaa cgggcacatc tcgaagatgg
     4741 tcttgttgcc ctcgtcgccg aagccgaagt cgctgaccgc ctcccagccg ccctcctccg
     4801 gcgccgcgct ctcatagacg atggagtgcg aggagacgtt ggggttgccg ccgcgcgagc
     4861 cggccggggt ggtgtacatg cgccccttga agctgaccat ggtgcggatg gtggtcaccg
     4921 gcaggcccat caggccgggc tcgcaggtgg gggtgaagtt cagtccgtcc tcgctgcgca
     4981 gcagcagcgg tcccgggccc ttggccggcg accaggtgct gacgaacagc gatggcttgc
     5041 gcccggcgct gccggggtac acgcacatgc cgcggaagcc cagctcgcgg gggatctt
//
LOCUS       DATIHC010000374         1968 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_596, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000374 DATIHC010000000
VERSION     DATIHC010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1968
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_596"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..558
                     /locus_tag="VLF16_06000"
     CDS             <1..558
                     /locus_tag="VLF16_06000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DSD1 family PLP-dependent enzyme"
                     /protein_id="HSX70467.1"
                     /translation="ALYQGHVDFTRQRFPALWREGLTLNTAGSPSYRAHEQERLSSEV
                     AIGTGLLKPSHYDLPSLAEHQPAVYIATPVLKRTGALRIPALDEKSRLFAWWDVNQRE
                     TFFIYGGNWQADLASPAGLQLSGLYGRSSNQELVNGSPAVGLAVDDQVFLRPTQSEAV
                     LLQFGDLLAVRGGKIVERWPVYQES"
     gene            complement(865..1899)
                     /locus_tag="VLF16_06005"
     CDS             complement(865..1899)
                     /locus_tag="VLF16_06005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002553768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSX70468.1"
                     /translation="MKPIADPRYSEASAPPQISRFLLQHVAAVGRDPAMLCRGLGFEP
                     DDLKKPDYRLSYRQSYLLVRRALHSLDDSGLGLAVGSRQTAVSWGLVGMAMLASPTLG
                     EALDLAIRYQRHTGALLDCEMELRGERCLVFATTRFFDPEVAVFYLEEAFASAQAIVR
                     HLSGQDLVIDRIELEYPPPPHWQRYADIFRCPVKFGAGHNLIAFDASWLQLPLPTRDD
                     YVAAEIAELLDSARWEQQGSSDLIETIQREVRKSLCRPPQLAELAQQLNLGERTLRRR
                     IDEAGLSYHGIVDSVRRAKALALLSHRDSRLIDVASETGFSDVRNFRRAFKRWTGVTP
                     RTAKQRIAQE"
BASE COUNT          276 a          636 c          729 g          327 t
ORIGIN      
        1 gcgctgtacc agggccatgt cgacttcacc cgccagcgct tcccggcgct gtggcgcgag
       61 ggcctgaccc tgaacaccgc tggcagcccc agctatcgcg cccacgagca ggagcggctg
      121 agcagcgagg tggccatcgg caccggcctg ctcaagccca gccactacga cctgccgtcg
      181 ctggccgagc accagccggc ggtgtacatc gccacgccgg tgctcaagcg cacgggcgcg
      241 ctgcgcattc cggcgctgga cgagaagtcg cggttgttcg cctggtggga cgtcaaccag
      301 cgtgagacct tcttcatcta cggcggcaac tggcaggccg acctggcctc gcctgccggg
      361 ctgcagctca gtggcctgta cgggcgcagc tcgaaccagg agctggtcaa tggctcgccg
      421 gcggtgggcc tggcggtgga cgaccaggtg ttcctgcgcc cgacacagag cgaggcggtg
      481 ttgctgcagt tcggtgatct actggccgtg cgcggcggca agatcgtcga gcgctggccg
      541 gtgtatcagg agtcctgaag ctttttagct tgcgccgcgc accaggagat ctctacgcgg
      601 cttctggtgc gcgcggcgca ccctacgttc gggcagccgg tgcggctttg acctctgcgc
      661 ggcggcaaga tcgtcgcgca ctggccggtg tatcgggaat cctgaagctt gggcgccaag
      721 agtcttggca tcggtcggcc gcccgggtcg actccctggg ctaggtgcga ggctcaggcc
      781 ttcgtagggt gccccgtgcg caccagggaa tcactgtagg ttcggggcgc gcggcgcacc
      841 ctacgctcgg ccgatgtgcg tcgatcattc ctgagcgatc cgctgcttcg ccgtgcgcgg
      901 ggtcaccccg gtccagcgct tgaaggcgcg gcggaagttg cgcacgtcgc tgaagccggt
      961 ctcgctggcc acgtcgatca gccggctgtc gcggtggctg agcagggcca gggccttggc
     1021 ccggcgcacg gagtcgacga tgccatggta ggacagcccc gcctcgtcga tgcgccggcg
     1081 cagggtgcgt tcgccgaggt tgagctgctg cgccagctcg gccagctgcg gtgggcggca
     1141 caggctcttg cgcacctcgc gctggatggt ctcgatcagg tcggagctgc cttgctgctc
     1201 ccagcgcgcg ctgtccagca gctcggcgat ctcggcggcc acgtagtcgt cgcgggtcgg
     1261 tagcggcagt tgcagccagc tcgcgtcgaa ggcgatcagg ttgtgtccgg cgccgaactt
     1321 caccgggcag cggaagatgt ccgcgtagcg ctgccagtgc ggcgggggcg ggtattccag
     1381 ttcgatgcgg tcgatgacca ggtcctggcc ggacagatgg cgaacgatgg cctgggcgct
     1441 ggcgaaggcc tcctcgaggt agaacaccgc cacctccgga tcgaagaagc gcgtggtggc
     1501 gaacaccaga cagcgctcgc cacgcagttc catctcgcag tcgagcaggg cgccggtgtg
     1561 gcgctggtag cggatggcca ggtcgagcgc ctcgccgagg gtcgggctgg ccagcatggc
     1621 catgcccacc aggccccagg acacggcggt ctgtcggctg ccgacggcca ggcccaggcc
     1681 gctgtcgtcc aggctgtgca gggcgcggcg taccagcagg tagctctgcc ggtaggacag
     1741 gcgatagtcg ggcttcttca ggtcgtcggg ctcgaagccc aggccacggc agagcatggc
     1801 cgggtcgcgg ccgacggcgg ccacgtgctg cagcaggaag cgggagatct gcggcggggc
     1861 cgaggcctcc gagtagcgcg gatcggcgat gggtttcatg gacgcgctcc ctgcaggaag
     1921 tcgttgggcg gcggctggcg cctgttcttg ttgttatgcg gcgtcttg
//
LOCUS       DATIHC010000375         2207 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10373, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000375 DATIHC010000000
VERSION     DATIHC010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10373"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(260..1042)
                     /locus_tag="VLF16_06010"
     CDS             complement(260..1042)
                     /locus_tag="VLF16_06010"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014719557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HSX70469.1"
                     /translation="MLVDSHCHLDRLDLAAHDGSLDAALDAARARGVQHFLCIGVSAA
                     NAGAVKTLAERYADVDCSVGVHPLDLEKGEAPALDWLLGELNHPNVVAIGETGLDYHY
                     EPEAAELQQQSFRLHLDAAKITGKPVIVHTREARADTLTLLREAALPQAGVLHCFTED
                     WDMAKAALDIGFYISLSGIVTFRNADALREVARKVPADRLLVETDSPYLAPIPHRGKP
                     NLPQYVREVAEFLAMVRGESFEALAAQTTANFKRLFPLARLA"
     gene            complement(1258..1614)
                     /locus_tag="VLF16_06015"
     CDS             complement(1258..1614)
                     /locus_tag="VLF16_06015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HSX70470.1"
                     /translation="MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTAKS
                     YKLGDEVFMLLNLMDEPEKIPVAGKVVWITPKGAQGNRAAGVGVQFNDGDNTARNKIE
                     TYLAGALKSDRPTHTM"
     gene            complement(1649..>2207)
                     /locus_tag="VLF16_06020"
     CDS             complement(1649..>2207)
                     /locus_tag="VLF16_06020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003104126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase III subunit delta' C-terminal
                     domain-containing protein"
                     /protein_id="HSX70471.1"
                     /translation="HQPSRLLPTVKSRCVQQACPLPNPEQSLTWLAQALPESSDEQRQ
                     ELLALAGGSPLMARRLQGQGVLEQRALVVEGVKKLLKQQASASQLAETWKTLPMAMLF
                     DWFCDWAQLMLRYQLSRDEEGLGAADMRKVVQYLADKTPQHKLLSMQDWLLQQRQKVL
                     GKANLNGALLLEALLVQWASLPGPG"
BASE COUNT          360 a          723 c          702 g          422 t
ORIGIN      
        1 gggccagctg cgacaaggct gagtgctcag cagcggaagc ggtattccaa atacgtttaa
       61 gaaaccgccg cgacccctct ggacggtgag cgatcctggc taatactgga actactggcg
      121 tgcggcatct ccccccaagt gccccgccag tcgaggtacc gtggatcgcg tacctttgtt
      181 ttactcctaa tggtcttgac ccggattcat cccccagaac ccgggttttt tttgtccgcg
      241 atttctatga ggcggccact caggccaggc gcgccagcgg gaacagccgc ttgaagttcg
      301 ccgtcgtctg tgcggccagc gcctcgaacg actcgccacg caccatcgcc aggaactccg
      361 ccacctcacg cacgtactgc ggcaggttgg gtttgccgcg atggggaatc ggcgcgagat
      421 agggcgaatc ggtctccacc agcaaccggt cggccggcac cttgcgcgcc acctcgcgca
      481 gagcatcggc gttgcggaag gtgacgatgc ccgacagcga gatgtagaag ccgatgtcca
      541 gggcggcttt ggccatgtcc cagtcttcgg tgaagcagtg cagcacaccg gcctgaggca
      601 aagccgcttc gcgcagcagc gtcagggtgt cggcacgcgc ctcgcgggta tggacgatga
      661 ccggtttgcc ggtgattttc gccgcgtcca ggtgcaggcg gaacgactgc tgctgcagct
      721 cggccgcttc gggctcgtag tggtagtcga ggccggtctc gccgatggcc accacattgg
      781 gatggttcag ctcaccgagc agccagtcca gcgccggcgc ctcacccttc tccaggtcca
      841 gcggatgcac gcccaccgag cagtcgacgt cggcatagcg ctcggccagg gtcttgaccg
      901 caccggcgtt ggcggcgctg acgccgatgc acaggaaatg ctgcacgccg cgggcacggg
      961 cggcgtccag cgccgcgtcg agggagccgt cgtgggccgc caggtcaagg cggtcgaggt
     1021 ggcagtggga gtcaaccagc atgggatttc tctgtctctg agactgccta cgatctgctg
     1081 cgcgtcggcc atgcgtcgtt aaaagcagac tcggaatgct catttaccat tcgtaaactc
     1141 cgcttcctcg cctgcttttg cctagcctgg ctctagctcg caagatcgta aacaggctct
     1201 ccgaaatgac gaagcgcccg attcgggcgc ctctgccttg aagctcgatg tcgtgactta
     1261 catggtgtgg gtcgggcgat ccgacttcag cgcaccggcc aggtaagtct cgatcttgtt
     1321 gcgcgcggtg ttgtcgccgt cgttgaactg tacgccgacg ccagcggcgc ggttgccctg
     1381 ggcgcccttg ggggtgatcc agaccacctt gccggccacc ggaatctttt ccggctcgtc
     1441 catcaggttc agcagcatga acacttcgtc gcccagcttg tagctcttgg ccgtgggaat
     1501 gaacaggccg ccgttgcgga tgaacggcat gtaggctgcg tacaacacgg acttgtcctt
     1561 gatggtgagg gacaggatcc cgttacgcgg tcctagattc ggtggcaagc tcatgcactc
     1621 ttcctggcgg ctgatccgat gcccgattct agcccggtcc aggcaggctt gcccactgca
     1681 ccagcagggc ttcgagaagc agagcaccgt tcaggttagc cttgcccagc accttctggc
     1741 gctgctgcag cagccagtcc tgcatgctca acagtttgtg ctggggcgtc ttgtcggcca
     1801 ggtactgcac caccttgcgc atgtcggccg caccgaggcc ctcctcgtcg cggctcagct
     1861 ggtagcgcag catcagctgg gcccagtcgc agaaccagtc gaacagcatc gccatcggca
     1921 gggtcttcca ggtctcggcc aactggctgg cgctggcctg ctgcttgagc agcttcttca
     1981 cgccctcgac caccagcgcg cgctgctcca gcacgccctg cccctgcagg cggcgcgcca
     2041 tcagcggcga gccgccggcc agcgccagca gctcctgacg ctgctcgtca ctgctctcgg
     2101 gtagcgcctg ggccagccag gtcaggctct gctccgggtt cggcagcggg caggcctgct
     2161 gcacgcagcg gctcttcacg gtcggcagca ggcggctggg ctggtgg
//
LOCUS       DATIHC010000376         2671 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5846, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000376 DATIHC010000000
VERSION     DATIHC010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2671
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5846"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            174..2096
                     /locus_tag="VLF16_06025"
     CDS             174..2096
                     /locus_tag="VLF16_06025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003119238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1302 domain-containing protein"
                     /protein_id="HSX70472.1"
                     /translation="MTITQPFWRLAKLPLAVSLASTLAAPAFGVTFNIGEIEGQLDSS
                     LSVGASWSVRSADPDLIGVNNGGDGLSQTSDDGHMNFKKGETFSKIFKGIHDLELKYG
                     DTGVFVRGKYWYDFELKDEHREFKDIDDHNRKEGAQSSGAEILDAFVYHNYSLLEQPG
                     SVRLGKQVVSWGESTFILNSINSINPVDVSAFRRPGAEIKEGLIPVNMFYVSQSLTDN
                     LSAEAFYQLEWDQTVVDNCGTFFSQADIVADGCDQNLAVLSNDPASIALVNSFLAPAG
                     FGIESSPWNEGIVVRRGGDRDARDGGQFGLALRYFSEPLDTEFGAYFMNYHSRTPVFS
                     GGGPSQAAVDAINAVATGAAGVVGVSTAARLAAAGMAGNGSYFLEYPEDIRLYGVSFS
                     TTLPTGTAWSGELSYRPNAPVQLNTTDILYAGLAPISVGGVPVYANASLLDGQADSDL
                     HGYRRKEITQFQTTFTHFFDQVMGASRLTLVGEVGVVHVGGLENSSEVRYGRDPIYGP
                     GALPGTLSGLPTCVALNAGTLGSPTAENVSKHCNDDGFVTSTSWGYRARAIWDYPDVF
                     AGVNLRPSVAWSHDVDGYGPNNLFTEDSKAVSLGLEAEYQNTYTANLSYTDFFGGDYN
                     TSVDRDFVALSFGASF"
     gene            2131..>2671
                     /locus_tag="VLF16_06030"
     CDS             2131..>2671
                     /locus_tag="VLF16_06030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1329 domain-containing protein"
                     /protein_id="HSX70473.1"
                     /translation="MKTTKYMLQSGVLALSMLATSVMAAVSADEAAKLGATLTPVGAE
                     KAGNADGSIPEWTGGLPKDAGSVDDKGFLSNPFSSEKPLFTITAQNVDQYKDKLTPGQ
                     LAMFKRYPETFKMPVYTTHRTANLPQNVLDDTKHNATNAKLVEGGNGLENFKTANPFP
                     IPQNGLEVIWNHITRYRGGS"
BASE COUNT          532 a          845 c          774 g          520 t
ORIGIN      
        1 aacgcttggc ttgtaaattg ctgtcgcgag atgaatccgg ccggctcgca tcgcgtgacc
       61 ggccggtcta gagaggccgg gggcaggaaa tcacacttta gggggatcaa gcctaggggg
      121 gtggtagcta tagtccgcgg catccataac aaaaaacaca tggagtagcg tcgatgacaa
      181 tcacccaacc gttctggcgt ctggccaaac tgcctctggc agtcagcctt gcctcaaccc
      241 tcgctgcccc ggctttcggt gtcaccttca atatcggtga gatcgagggt cagctcgatt
      301 cctctctgtc cgttggtgcc agctggtcgg tacgtagcgc cgatccggat ctgatcgggg
      361 tcaataatgg cggcgatggc ctgtcccaga cctccgacga cggccacatg aacttcaaga
      421 agggcgagac cttctcgaag atcttcaagg gcatccacga tctggagctg aagtacggcg
      481 acaccggtgt gttcgttcgt ggcaagtact ggtacgactt cgaactgaag gatgagcacc
      541 gcgaattcaa ggacatcgac gaccacaatc gcaaagaagg cgcccagtct tccggtgcgg
      601 aaattctcga cgccttcgtt taccacaact actccctgct ggagcagccg ggtagcgtcc
      661 gtctcggcaa gcaggtggtg agctggggtg aaagtacctt catcctgaac agcatcaact
      721 cgatcaaccc agtagacgtg tcggcgtttc gtcgccctgg tgccgaaatc aaggaaggcc
      781 tgattccggt caacatgttc tatgtgtccc agagcctgac cgacaactta tcggccgaag
      841 ccttctatca gctcgagtgg gatcagaccg tagtcgacaa ctgcggcact ttcttctccc
      901 aggccgacat cgtcgccgac ggctgcgacc agaatctggc tgtgttgagc aacgatccgg
      961 cgtccatcgc cctcgtcaac tcgttccttg ctcctgccgg cttcggtatc gaaagctctc
     1021 cctggaacga gggcatcgtg gttcgccgtg gcggcgaccg tgacgctcgt gacggtggcc
     1081 agttcggcct cgctctgcgc tatttctccg agccgctgga taccgagttc ggcgcctact
     1141 tcatgaacta ccacagccgc actccggtgt tcagtggtgg cggtccctcc caggctgcgg
     1201 tagacgcgat caacgctgtc gccactggcg cggctggtgt ggttggcgta tcgactgcgg
     1261 cgcgcttggc tgcagccggc atggcgggta acggtagcta cttcctcgag tatcccgagg
     1321 acatccgtct ctacggtgtg agcttctcga ccaccctgcc caccgggacc gcctggtccg
     1381 gcgagctgag ctatcgtccg aacgcgccgg tgcagctgaa caccaccgat atcctctacg
     1441 ccggtttggc cccgatcagc gtgggtggcg ttccggttta cgccaacgcc tcgctgctgg
     1501 acggtcaggc cgacagcgat ctgcatggct accgccgcaa ggaaatcacc cagttccaga
     1561 ccaccttcac ccacttcttc gaccaggtca tgggcgcatc gcgtctgacc ctggtcggtg
     1621 aagtcggcgt ggtccatgtc ggcggtctgg aaaacagcag tgaagttcgc tacggccgcg
     1681 atccgatcta tggccctggc gcactgcctg gcaccctcag cggcctgccg acctgtgtcg
     1741 ccctgaacgc cggcactctc ggcagcccca ccgccgagaa tgtgagcaag cattgcaacg
     1801 atgacggttt cgtcacgtcg acctcctggg gctaccgcgc tcgcgccatc tgggactacc
     1861 cggacgtgtt cgctggtgtg aacctgcgcc cgagcgtggc ctggtcgcat gacgtggacg
     1921 gctacggtcc gaacaacctg ttcaccgagg actccaaggc cgtaagcctt ggtctggagg
     1981 ccgagtacca gaacacctac accgcgaacc tgtcctacac cgatttcttc ggtggcgatt
     2041 acaacacctc ggttgaccgc gacttcgtgg cactgagctt tggcgccagc ttctaagcga
     2101 gaccaggatc tctgaggaat acacatgcaa atgaaaacaa caaaatacat gctgcaatcc
     2161 ggtgttctgg ccctgtcgat gctggccacc agcgtaatgg ccgccgtttc tgctgatgaa
     2221 gcggccaagc tcggcgccac gctgaccccg gtcggtgccg agaaggccgg caatgccgat
     2281 ggctcgattc cggagtggac tggcggtctg ccgaaggacg ccggtagcgt ggacgacaag
     2341 ggcttcctgt cgaacccctt ctccagcgaa aagccgttgt tcaccatcac tgcgcagaac
     2401 gtcgaccagt acaaggacaa gctgacccct ggtcagctgg cgatgttcaa gcgctaccca
     2461 gaaaccttca agatgccggt gtacaccacg caccgcaccg cgaacctgcc gcagaacgtg
     2521 ctggacgaca ccaagcacaa cgccaccaac gccaagctgg tcgagggcgg caacggtctg
     2581 gaaaacttca agaccgccaa cccgttcccg atcccgcaga acggtctgga agtgatctgg
     2641 aaccacatca cccgctaccg tggcggcagt g
//
LOCUS       DATIHC010000377         2314 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_16877, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000377 DATIHC010000000
VERSION     DATIHC010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2314)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2314)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2314
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16877"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..257)
                     /locus_tag="VLF16_06035"
     CDS             complement(<1..257)
                     /locus_tag="VLF16_06035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HSX70474.1"
                     /translation="MIVFRYLSREVLVTLGAVSAVLLVIIMSGRFIKYLAQAAQGILD
                     PGVLFLIMGYRMPGFLQLILPLGLFLGFLLAYGRLYLDSEMT"
     gene            396..1883
                     /locus_tag="VLF16_06040"
     CDS             396..1883
                     /locus_tag="VLF16_06040"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003459657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0019538 - protein metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HSX70475.1"
                     /translation="MEFLVKSTRPETLKTATLVVALGEGRKLGVAAKAVDDASGGAIS
                     SLLKRGDIAGKQGQTLLLHALPGLKAERVLLVGSGKGELSDRQFRKLVASAHGVLKNL
                     GGGDAVLAFGELKVKGRDAYGKARLLVETLANGGYVFDRFKSKKAEPRALKKITLIAD
                     KAEQAEVERGSLHARAIATGMAFTKDLGNLPPNLCHPSYLAEEAKALAKAHKNLKVDI
                     LDEKKLRELGAGAFLAVAQGSEQPPRMIVLQYNGGRKDEQPFALVGKGITFDTGGISI
                     KPAAGMDEMKYDMCGAASVFGTLRAVLELQLPINLVCLLACAENMPSGRATRPGDIVT
                     TMSGQTVEILNTDAEGRLVLCDTLTYAERFKPQAVIDIATLTGACIVALGSNVSGLMG
                     NNDALVKQILKAGESADDRAWQLPLYDEYQEQLDSPFADIANIGGPKAGTITAGCFLS
                     RFAKAYSWAHLDIAGTAWVSGGKDKGASGRPVPLLTQYLLDRAKA"
     gene            1972..>2314
                     /locus_tag="VLF16_06045"
     CDS             1972..>2314
                     /locus_tag="VLF16_06045"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016491052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HSX70476.1"
                     /translation="MRVEFYVLSSATPEGRLRAACQLATKAWKAGLPVFLRGADAAQC
                     AELDRLLWSFRPESFVPHGLHEEDAQAPVVIGLDQEPAQAGGVLLNLHPQLSPHLARF
                     SRVIEIVNQEPA"
BASE COUNT          428 a          825 c          752 g          309 t
ORIGIN      
        1 gtcatctcgc tgtccaggta caggcgaccg taggccagca ggaagccgag gaacaggccc
       61 agcggcagga tcagctggag gaagccgggc atgcgatagc ccatgatcag gaacagcacg
      121 ccggggtcga gaatgccctg ggcggcctgg gcaaggtact tgatgaaacg gccgctcatg
      181 atgatcacca gcagcacggc gctcaccgcg ccgagggtca ccagcacttc gcgggacaga
      241 taacggaaga caatcaaacc ggacgctcca gggttgtcag gcgcaggcag gcacgctcac
      301 actagccgca ctcggtggcc gacccgcctc ggcgggcctc gaaaaaatag cccgcattat
      361 cagtcaaacc cgcttctttg tcttggggac agcacatgga attcctcgtc aaaagcaccc
      421 gcccggaaac cctgaagacc gcgaccctgg tggtcgcgct cggcgaaggc cgcaagctcg
      481 gcgtcgcggc caaggccgtg gacgacgcca gcggcggtgc catttccagc ctgctcaagc
      541 gcggcgatat cgccggcaag cagggccaga ccctgctcct gcacgccctg ccgggcctca
      601 aggccgagcg cgtgttgctg gtcggcagcg gcaagggcga actctccgac cgccagttcc
      661 gcaagctggt cgccagcgcc cacggcgtgc tgaagaacct cggcggcggc gatgccgtgc
      721 tggccttcgg cgagctcaag gtcaagggcc gcgatgccta tggcaaggcc cgcctgctgg
      781 tggagaccct ggccaacggc ggctatgtgt tcgaccgctt caagagcaag aaggccgagc
      841 cgcgcgcgct gaagaagatc accctgatcg ccgacaaggc cgagcaggcc gaggtcgagc
      901 gcggcagcct gcacgcccgc gccatcgcca ccggcatggc cttcaccaag gacctcggca
      961 acctgccgcc gaacctctgc caccccagct atctggccga agaggccaag gccctggcca
     1021 aggcgcacaa gaatctcaag gtcgacatcc tcgacgagaa gaagctcagg gagctcggcg
     1081 ccggcgcctt cctcgccgtg gcccaaggca gcgaacagcc gccgcggatg atcgtgctgc
     1141 agtacaacgg cgggcggaag gacgagcagc cgttcgccct ggtcggcaag ggcatcacct
     1201 tcgacaccgg cggcatcagc atcaagccgg ccgccggcat ggacgagatg aagtacgaca
     1261 tgtgcggcgc cgccagcgtg ttcggcaccc tgcgcgccgt gctggagctg cagctgccga
     1321 tcaatctggt gtgcctgctg gcctgcgccg agaacatgcc cagtggccgc gccactcgcc
     1381 ccggcgacat cgtcacaacc atgagcggac agaccgtcga gatcctcaac accgatgccg
     1441 aaggccgcct ggtgctgtgc gacacgctca cctacgccga gcgcttcaag ccgcaggcgg
     1501 tgatcgatat cgccaccctc accggcgcct gcatcgtcgc cctgggcagc aacgtgtccg
     1561 gcctgatggg caacaacgac gcgctggtga agcagattct caaggccggc gagagcgccg
     1621 acgaccgcgc ctggcagctg ccgctgtacg acgagtacca ggagcagctg gacagcccgt
     1681 tcgccgacat cgccaacatc ggcgggccga aggccggcac catcaccgcc ggctgtttcc
     1741 tgtcgcgctt cgccaaggcg tacagctggg cgcacctgga catcgccggc accgcctggg
     1801 tgagcggcgg caaggacaag ggcgccagcg gccgcccggt gccgctgctg acccaatacc
     1861 tgctggatcg cgccaaggcg taagcggcga cggcccggtg gatgctccgc cgggccgatc
     1921 cgctccagtc cgagccgcac ccggctaccg attcatcacc ccgagccccg tatgcgcgtc
     1981 gagttctacg tcctctcctc cgccacgccg gaaggccgcc tgcgggccgc ctgccagctg
     2041 gccacaaagg cctggaaggc cggcctgccg gtgttcctgc gcggcgccga cgccgcccag
     2101 tgcgccgagc tggatcgcct gctgtggagc tttcgccccg agtccttcgt gccccacggc
     2161 ttgcacgagg aagacgcgca ggccccggta gtgatcggcc tggaccagga gccggcacag
     2221 gccggcggcg tgctgctcaa cctgcacccg cagctgtcac cgcacctggc ccgcttcagc
     2281 cgcgtcatcg agatcgtcaa ccaggagccg gcgc
//
LOCUS       DATIHC010000378         2862 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19678, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000378 DATIHC010000000
VERSION     DATIHC010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2862)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2862
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19678"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(233..1903)
                     /gene="leuA"
                     /locus_tag="VLF16_06050"
     CDS             complement(233..1903)
                     /gene="leuA"
                     /locus_tag="VLF16_06050"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012702523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HSX70477.1"
                     /translation="MTMLKDPSKKYRPFTQIQLSDRTWPDRIIDKAPIWLSTDLRDGN
                     QSLIEPMDAEKKMRFFKCLLAVGLKEIEVGFPSASQTDFDFVRELIEGGHIPDDVTIQ
                     VLTQARDDLIERTFESLKGAKRAIVHYYNACAPSFRKIVFNQDKAGVKAIAVAAGTTI
                     KRLADAAPETQWGFEYSPEVFSSTEIDFAVEVCNAVIGVFQPTPAQKLILNLPATIEC
                     ATPNNYADQIEWFGRHIDRRDSVLISVHTHNDRGTGVAASELAVMAGADRVEGCLFGN
                     GERTGNVCLVTLALNLYTQGVDPELDFSDIDAVRKVVEECNQLPVHPRHPYVGDLVHT
                     AFSGSHQDAIRKGFAQQDPEGIWEVPYLPIDPADIGRDYEAVIRVNSQSGKGGITFLL
                     EQEYGISLPRRMQIEFSQVVQRETDRLGLEMTAQQIYGLLQSEYLQADSPYVLKGHRL
                     QEENGICTVDVDVTHNGEARRKHGTGKGPLEALVAALPQNIEIMDYHEHAISAGTNAQ
                     AAAYIEVRLNGGRPLHGIGIDENLTTATFRALFSALNRALAQTEVQAA"
     gene            complement(2107..>2862)
                     /locus_tag="VLF16_06055"
     CDS             complement(2107..>2862)
                     /locus_tag="VLF16_06055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011914108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HSX70478.1"
                     /translation="VASVQISSNDIIRVGDWVEMPALNADGDVIDIALHTVKVQNWDK
                     TITVIPTKRFISDSFKNWRGMQESGGRRIKRSLFLDQTSVAFLDQQQIHRLHRLQLLD
                     RYLTNKSSELLSWNTQLAEHADEPANTRRLTNLGTFRAYVEHYLRQHPDVRQDMTLLV
                     RQLAPTAEGLPLELYCFTATTAWARYEAIQSDIFDHLLALLPEFGLRVFQSPCGADFR
                     RLMPAEAASRGDHAIQTQHEPLESNNPSRNQIK"
BASE COUNT          436 a          843 c         1027 g          556 t
ORIGIN      
        1 tgaaccgcca gaaaaaagcc cgccaatcgg cgggcttttt cgttcgggtg agatcttggc
       61 ggagcgtggc catgcgcacg catctgacgt cactcctgag catgcgccca tggacctggc
      121 ggatcggctc gccggccgag actgtctgat gcgccgcgcc gcagcctgcc gactcccagc
      181 gtcgcgggca tgaaaaaggg ggccgtagcc ccctcgttca aacgcgcgca gctcaggcag
      241 cctgcacctc ggtctgtgcc agcgcgcggt tgagggcgct gaacagggcg cggaaggtcg
      301 cggtggtcag gttctcgtcg atgccgatgc cgtgcagcgg acggccgccg ttcaggcgca
      361 cctcgatata ggccgcggcc tgggcattgg taccggcgct gatggcgtgc tcgtggtaat
      421 ccatgatctc gatgttctgc ggcagggcgg cgaccagtgc ctccagcggg cccttgccgg
      481 tgccatgctt gcggcgcgcc tcgccgttgt gggtgacatc gacgtcgacg gtgcagatgc
      541 cgttctcctc ctgcaggcga tggcccttga gcacgtaggg actgtcggct tgcaggtatt
      601 cgctctgcag caggccgtag atctgctggg cggtcatttc caggccgagg cggtcggtct
      661 cgcgctgcac cacctggctg aactcgatct gcatgcggcg cggcaggctg atgccgtatt
      721 cctgctcgag caggaaagtg atgccgccct tgccggactg gctgttcacc cggatcacgg
      781 cttcatagtc gcggccgatg tcggccgggt cgatcggcag gtacggcact tcccagatgc
      841 cttccgggtc ctgctgggcg aagcccttgc ggatggcgtc ctggtgcgag ccggagaagg
      901 cggtgtggac caggtcgccg acgtacgggt ggcgcgggtg caccggcagc tggttgcact
      961 cttccaccac cttgcgcacg gcatcgatgt cggagaagtc cagttcgggg tcgacaccct
     1021 gggtgtagag gttcagcgcc agggtcacca ggcagacgtt gccggtgcgc tcgccgttgc
     1081 cgaacaggca gccttccacg cggtcggcac cggccatcac ggccagctcc gaggcggcca
     1141 cgccggtgcc gcggtcgttg tgggtgtgca cgctgatcag cacgctgtcg cggcgatcga
     1201 tgtggcggcc gaaccattcg atctggtcgg catagttgtt cggcgtggcg cactcgatgg
     1261 tggccggcag gttgaggatc agcttctgcg ccggggtcgg ctggaacacg ccgatcaccg
     1321 cgttgcacac ctcgacggcg aagtcgattt cggtgctgct gaacacttcc ggcgagtact
     1381 cgaagcccca ctgggtctca ggcgcggcgt cggccaggcg cttgatggtg gtgccggcgg
     1441 ccacggcgat ggctttgacg ccggccttgt cctggttgaa gacgatcttg cggaagctcg
     1501 gcgcgcaggc gttgtagtag tggacgatgg cgcgcttggc ccccttgagc gactcgaagg
     1561 tgcgctcgat gaggtcgtcg cgggcctggg tcagcacctg gatggtcacg tcatcgggga
     1621 tgtggccacc ctcgatcagc tcgcggacga agtcgaagtc ggtctgcgag gcggacggga
     1681 agcccacttc gatttccttc aggcccacgg ccagcaggca cttgaagaag cgcatcttct
     1741 tctcggcatc catcggctcg atcagcgact ggttgccgtc gcgcaggtcg gtggacagcc
     1801 agatcggcgc cttgtcgatg atccggtccg gccaggtgcg gtcggagagc tggatctggg
     1861 tgaacgggcg gtacttcttc gaggggtctt tgagcatggt catggtacgg agtccttggg
     1921 cgacgacggg ccagcggaag cggggagacg agcgagaggg gtgttcagct acgcagtcgc
     1981 gggctgacca ggcgctggca ggcgaattgg cgtcgcagaa tgagggtgtg cgcggtgttc
     2041 atggcgctca ccttaaggtc gaaggttaaa agtggcaagc cttcgtaaaa gaacgccgtt
     2101 tacccgtcat ttgatctggt ttcgcgatgg attgttgctc tcgagcggct catgttgcgt
     2161 ctgaattgcg tgatcgcccc ggctcgctgc ctcggccggc atcaatcggc ggaagtctgc
     2221 gccgcagggg ctctggaata cccggaggcc gaattcgggc agcagcgcca ggaggtggtc
     2281 gaagatgtcg gactggatcg cctcgtagcg cgcccaggcg gtggtcgccg tgaagcagta
     2341 cagctccaac ggcaggccct cggcggtggg cgccaactgg cgcaccagca gagtcatgtc
     2401 ctggcgcacg tcgggatgct ggcgcaggta gtgctcgacg taggcgcgga aggtgccgag
     2461 gttggtcagg cggcgggtgt tggccggctc gtcggcgtgt tcggccagct gcgtattcca
     2521 gctgagcagc tcgctgctct tgttggtgag gtagcgatcc agcagttgca ggcggtgcag
     2581 tcgatggatc tgctgctgat cgaggaaggc cacgctggtc tggtcgagga acaggctgcg
     2641 cttgatgcgc cgcccgccgg attcctgcat gccgcgccag ttcttgaacg agtcgctgat
     2701 gaaacgcttg gtgggaatga cggtgatggt cttgtcccag ttctgcacct tgaccgtgtg
     2761 cagggcgatg tcgatgacgt cgccgtcggc gttgagcgcc ggcatctcca cccagtcgcc
     2821 gacccggatg atgtcgttgg agctgatctg cacgctggcc ac
//
LOCUS       DATIHC010000379         1587 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33769, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000379 DATIHC010000000
VERSION     DATIHC010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1587
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33769"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..247)
                     /locus_tag="VLF16_06060"
     CDS             complement(<1..247)
                     /locus_tag="VLF16_06060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019648866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HSX70479.1"
                     /translation="MPHDGSVLQGAVVFLFAAVLAVPLAKRLQLGAVLGYLLAGVLIG
                     PSVLGLIGDPESVAHLSEMGVVLLLFIIGLELSPRRLW"
     gene            370..1308
                     /locus_tag="VLF16_06065"
     CDS             370..1308
                     /locus_tag="VLF16_06065"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015276299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSX70480.1"
                     /translation="MNPAAIATLQQHLLRAFADLPPEARRLFHGRGRQWPGLEQITVD
                     WLQGVLLVSLFREPDEAELAELRRMLLALGDSPAWAASGAAHLLLQHRYRADSATDYL
                     LGAPLERHEIDEDGLRYLLDFGRKQNCGLFLDMRLGRRWLREQAGGRRVLNLFAYTCG
                     FSVAAIAGGAERVVNLDMSRPALSRGRDNHRLNGHDLSRVGFLAHDLFNSWGRLRREG
                     PHELIVVDPPSFQKGSFVLTRDYAKILRRLPELLTPGGQVLACCNDPGLTPDFVIAEA
                     AREAPQLHYRQRLDNPPEFADIDPDRALKVLLFAVD"
     gene            complement(1305..>1587)
                     /locus_tag="VLF16_06070"
     CDS             complement(1305..>1587)
                     /locus_tag="VLF16_06070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015272303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HSX70481.1"
                     /translation="SHFSRAFKKATGMSPQDWALDLRVRRAQELLRDSALPISSISLE
                     CGFADQSHFSRTFGRLVGITPKRWRQLNARPAAALRVIPGDMSLGVVAG"
BASE COUNT          244 a          575 c          540 g          228 t
ORIGIN      
        1 cccacaggcg ccgcggcgac agctccaggc cgatgatgaa cagcagcagc accacgccca
       61 tctccgacag gtgcgccacg ctctcgggat cgccgatcag gcccagcacc gaggggccga
      121 tcagcacgcc ggccagcagg taaccgagca cggcgccgag ctgcaggcgc ttggccagcg
      181 gcaccgccag cacggcggcg aagaggaata cgactgctcc ctgcagtacg ctgccgtcgt
      241 gaggcatgga aatctcccgt tcaaaatgat tgcaaaggtt atcagctcgc gcctcgcccg
      301 gcgcggccgc ggcgtcgcag gtgggcgtta tggcctagaa tgccggcccg tttcctcgtt
      361 gcgcccgtca tgaatccagc cgccatcgcc accctgcagc agcacctgct gcgcgccttc
      421 gccgacctgc cgcccgaggc gcgccgcctg ttccacggcc gtggccggca atggccgggc
      481 ctggagcaga tcaccgtcga ctggctgcag ggcgtgctgc tggtgtcact gttccgtgag
      541 cccgatgagg ccgagctggc cgagctcagg cgaatgctgc tggccctggg cgactcgccg
      601 gcctgggccg ccagcggcgc cgcgcacctg ctgctacagc accgctaccg cgccgacagc
      661 gccaccgact acctgctcgg cgcgcccctc gagcgtcacg aaatcgacga agacggcctg
      721 cgctacctgc tcgatttcgg ccgcaagcag aactgcggcc tgttcctcga catgcgcctg
      781 gggcggcgct ggctgcgcga gcaggccggc gggcggcggg tgctcaacct gttcgcctac
      841 acctgcggtt tttccgtggc ggccatcgcc ggcggcgcgg agcgggtggt caacctggac
      901 atgtcgcgcc cggccctgag ccgcggtcgc gacaaccacc ggctgaacgg ccacgacctg
      961 tcgcgggtcg gcttcctcgc ccacgacctg ttcaactcct ggggcaggct gcgccgcgag
     1021 gggcctcacg agctgatcgt ggtcgacccg ccgagcttcc agaagggcag cttcgtgctc
     1081 acccgcgact acgccaagat tctgcgccgc ctgcccgagc tgctgacgcc cggcggccag
     1141 gtcctggcat gctgcaacga cccgggcctg acgcccgatt tcgtgatcgc cgaggccgcc
     1201 cgcgaggcgc cgcagctgca ttaccggcag cgcctggaca acccgccgga gttcgccgac
     1261 atcgacccgg accgggcgct caaggtgctg ctgttcgcgg tggattaacc ggccactacc
     1321 ccgagggaca tatccccagg gataacccgc agcgccgccg ccgggcgagc gttgagctgg
     1381 cgccagcgct tgggagtgat gccgaccagc cggccgaagg tgcggctgaa gtgcgactgg
     1441 tcggcgaagc cgcattccag gctgatcgag gagatgggca gggcactgtc gcgtagcagc
     1501 tcctgggccc ggcgcacgcg caggtccagc gcccagtcct gcggcgacat gccggtggcc
     1561 ttcttgaagg cgcgggagaa gtggctg
//
LOCUS       DATIHC010000380         2489 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37880, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000380 DATIHC010000000
VERSION     DATIHC010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2489
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37880"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..786
                     /locus_tag="VLF16_06075"
     CDS             <1..786
                     /locus_tag="VLF16_06075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016562098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OprD family outer membrane porin"
                     /protein_id="HSX70482.1"
                     /translation="INSQEIAGLALDAGQLNRVNQRDSSDNEPMTLTSSSNAARGFTG
                     LPADSDEFNFAGASYKWNDALTTSYHYGALDNFYKQHILSATHVLPLGDKQSFKSDLR
                     FARSTDDGDTNVDNKAFGALFTYSLGGHAFGLGYQKMSGDTGYAYIGGTDPFLVNYVQ
                     VGDFAFKDEKSWQARYDYNFAAIGIPGLTFMTRYLSGDNVDLGAGASEGKEWERNTDI
                     AYVFQEGPLKNFGVKWRNATVRSNFGNDLDENRLILSYSLSLW"
     gene            complement(846..2054)
                     /locus_tag="VLF16_06080"
     CDS             complement(846..2054)
                     /locus_tag="VLF16_06080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009050098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HSX70483.1"
                     /translation="MENLNSAVETLIHGSNTLFILLGAIMVLAMHAGFAFLEVGTVRH
                     KNQVNALSKILSDFAVSALAYFFVGYWVAYGVTFMEPASTLTAGSGYALVKFFFLLTF
                     AAAIPAIISGGIAERAKFGPQLCATLLIVAFVYPFFEGLIWNGNFGLQAWLTERFGAA
                     FHDFAGSVVVHAVGGWLAFGAVILLGRRDGRYREGRLVAFAPSNIPFLALGSWILIIG
                     WFGFNVMSAQTLGSISGLVAVNSLMAMVGGTVAALLVGRNDPGFLHNGPLAGLVAICA
                     GSDLMHPVGALVTGAIAGALFVWAFTATQVRWKIDDVLGVWPLHGLCGVWGGIACGIF
                     GQGYLGGLGGVSLASQLIGTALGVLVALVGGFLVYGLLKSVTGIRLSQEQEYYGADLS
                     IHKIGANSQD"
BASE COUNT          528 a          842 c          753 g          366 t
ORIGIN      
        1 atcaactccc aggaaatcgc cggcctggcc ctcgacgccg gtcagctgaa ccgcgtcaac
       61 cagcgcgatt cgtccgacaa cgagcccatg accctgacca gcagtagcaa tgccgccagg
      121 ggcttcactg gtttgcctgc agatagcgac gagttcaact tcgccggcgc cagctacaag
      181 tggaacgacg cgctgaccac ttcctaccac tacggcgccc tggacaactt ctacaagcag
      241 cacatcctca gcgccacgca tgttctgccg ctgggcgaca agcagagctt caagagcgac
      301 ctgcgcttcg cccgctccac cgacgacggc gacaccaacg tcgacaacaa ggccttcggc
      361 gccctgttca cctacagcct gggcggccac gccttcggcc tgggctacca gaagatgagc
      421 ggcgacaccg gctacgccta catcggcggc accgatccgt tcctggtcaa ctacgtgcag
      481 gtcggcgact tcgccttcaa ggacgagaaa tcctggcagg cgcgctacga ctacaacttc
      541 gccgccatcg gcattcccgg cctgaccttc atgacccgct acctgagcgg cgacaacgtc
      601 gacctcggtg ccggggcttc cgagggcaag gaatgggagc gcaacaccga catcgcctat
      661 gtgtttcagg aaggtccgct gaagaacttc ggcgtgaagt ggcgtaacgc cacggtgcgc
      721 tcgaacttcg gcaacgacct ggacgagaac cggctgatcc tgagctacag cctgtcgctc
      781 tggtaagcgc cgagtgatga aaaagcccgc cgattggcgg gcttttttgt gctgccagga
      841 cgggctcagt cctggctgtt ggcgccgatc ttgtggatcg acaggtcggc accgtagtac
      901 tcctgctcct ggctcagacg aatgccggtc actgacttga gcaagccgta gaccaggaat
      961 ccgccgacca gcgccaccag cacgcccaac gcggtgccga tcagctgact ggccaggctc
     1021 acgccaccca ggccgcccag atagccctgc ccgaagatgc cgcaggcgat gccgccccac
     1081 acgccgcaca ggccgtgcaa cggccagacg ccgagcacgt cgtcgatctt ccacctcacc
     1141 tgggtcgcgg tgaaggccca gacgaacagc gcaccggcaa tcgcgccggt gaccagcgca
     1201 ccgaccgggt gcatcaggtc ggagccggcg cagatcgcca ccagcccggc cagcgggccg
     1261 ttgtgcagga agccggggtc gttgcggccg accagcagcg cggcgaccgt gccgccgacc
     1321 atggccatca gcgagttgac cgccaccagt ccgctgatgc tgccgagggt ctgcgcgctc
     1381 atcacgttga agccgaacca gccgatgatc aggatccacg agcccagcgc caggaacgga
     1441 atgttcgacg gcgcgaaggc caccaggcgg ccttcacgat agcggccgtc gcgacgaccc
     1501 agcaggatca ccgcgccgaa ggccagccag ccgcccaccg catgcaccac caccgagccg
     1561 gcgaagtcat ggaaggcggc gccgaagcgc tcggtcagcc aggcctgcag gccgaagttg
     1621 ccgttccata tcaggccctc gaagaacgga tagacgaagg cgacgattag cagcgtggcg
     1681 cacagctgcg ggccgaactt ggccctttca gcgatgccgc cggagatgat cgccgggatg
     1741 gcggcggcga aggtcagcag gaagaagaat ttcaccagcg catagccgct gcccgcggtg
     1801 agcgtcgacg ccggctccat gaaggtcacg ccgtaggcca cccagtagcc gacgaagaag
     1861 taggccaggg ccgagacggc gaagtccgag aggatcttcg acagggcgtt gacctggttc
     1921 ttgtgccgca ccgtgccgac ttcgagaaag gcgaagccgg cgtgcatggc cagaaccatg
     1981 atcgcgccga gcaggatgaa cagggtgttg gaaccgtgga tcagggtttc cacggcgctg
     2041 tttaggtttt ccatcgaatc atttgccccg gctgaaagca ccaaaaacga tctcttcgcc
     2101 gccatcacgc accaaacacg agcaccaccg gacaggacca tccggtgact tcgctccgtt
     2161 tcggcgcgcg cacttcgcca aaaactcgcg atcgcacatt tttccttttt atttcagcga
     2221 tatagcgaaa ggggcggcag acccgccatg gaccgagcga accatccgag ggcacgcaga
     2281 gagcatggcg caccagcgag tggcaaaacc tgtgccattg cggggcacgg acatgagcgt
     2341 gacgcaccgc ccgccgccag ctgaagcgcg ggataaaaag cctgaacctc ggcgcggctg
     2401 cttcgctcga acctgaagag ttcgtaaaac acgccaaagg agagcgccat gtcccccaca
     2461 ccgaacgccg acctgtccgg tctcgagac
//
LOCUS       DATIHC010000381         2986 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31377, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000381 DATIHC010000000
VERSION     DATIHC010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2986
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31377"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..319)
                     /locus_tag="VLF16_06085"
     CDS             complement(<1..319)
                     /locus_tag="VLF16_06085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016486326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase system, HPr-related protein"
                     /protein_id="HSX70484.1"
                     /translation="MNKHRTVEIDDTEDRMGSMRELDFSEERDEREGRVGDERPLEEV
                     GQEFPRDREAQAGLSGGEALTDSAHEDNVTLDDLSPDTLFDETGGYSPDDHSSPDDHS
                     ANHP"
     gene            734..904
                     /locus_tag="VLF16_06090"
     CDS             734..904
                     /locus_tag="VLF16_06090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012075920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="general stress protein"
                     /protein_id="HSX70485.1"
                     /translation="MAEHRGGKGNFAEDPQRASEAGKKGGSMSGGNFRNDPQRASEAG
                     RKGGQNSHGGRN"
     gene            complement(989..1606)
                     /locus_tag="VLF16_06095"
                     /pseudo
     CDS             complement(989..1606)
                     /locus_tag="VLF16_06095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008719782.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="paraquat-inducible protein A"
     gene            complement(1593..2234)
                     /locus_tag="VLF16_06100"
     CDS             complement(1593..2234)
                     /locus_tag="VLF16_06100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016392924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="paraquat-inducible protein A"
                     /protein_id="HSX70486.1"
                     /translation="MTQSLPPLEELIACHECDLLMRHPRVGLEQKACCPRCGFELVTH
                     RSHMRRRSLALVLTALILFVPANFLPIISLNLLGQNAVDTVWSGVLGLYNAGMEGIAL
                     VVLLCSMLVPLMKLLCQLFVLLAMPYAELRPAACYWYRVYHHMREWGMLEVYLFGILV
                     SAVKLLDMAELHLGVGLGCFVALMLTQVWLEVTMSPHQVWDALSEKEDGHART"
     gene            complement(2313..2936)
                     /locus_tag="VLF16_06105"
     CDS             complement(2313..2936)
                     /locus_tag="VLF16_06105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010678615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HSX70487.1"
                     /translation="MQQLFYLADLFGVAVFAITGALMAGRKSMDLFGVLVIAVITALG
                     GGTLRDLILDNHPVSWIRNDTYILLASAAAVGTVLWVRLTQPIHERGLLIADAFGLAV
                     FTVIGTEVALQHNVPYSTAVIMGVMTGVAGGVMRDVICNEIPLIFQKEIYATACILGS
                     LVFIALRELQTPHWLDTGIAMLTVLLTRLAAIRWHLSLPRFHLLDRD"
BASE COUNT          579 a          937 c          968 g          502 t
ORIGIN      
        1 tgggatggtt ggcgctgtgg tcgtcgggtg agctgtggtc gtcgggtgaa tagccaccgg
       61 tttcgtcgaa cagggtgtcg gggctcagat cgtccagggt cacgttgtct tcgtgggcgc
      121 tgtcggtgag ggcttcgcca ccgctcaggc cggcctgggc ttcgcgatca cgggggaatt
      181 cctggcctac ttcctcgagc ggacgctcat cacccacccg cccctcacgc tcgtcacgtt
      241 cctcgctgaa atccagctcg cgcatggagc ccatgcgatc ttcggtatcg tcgatctcga
      301 ccgttctatg cttgttcatc tgcaaactcc cctttccagg cgtggtcttc ctgtcgactt
      361 gcctgccgga cgatgattca agcttttgcc gcgctcagct gctagggcgg gcgagcgctc
      421 tcccggatgt gcgctggatc gcggtggttt gcagatgcgg aaatggagcg attcccggcg
      481 caagcgcacg cctgcaaatg ctggccttgt gccccaaccc ccagggacaa atgccgattc
      541 ggactagcaa gacggtccag ttaggcccaa atcaaaggtg ttatgactgg cacgtcacgc
      601 tgcggcggcc gacgccgctt tccttatgct tttaagtaat caaaaaaaaa ggaacacctc
      661 ttcaaccaat cgcctccgaa taagggagcc cttccggggc gctcattctc aaagactctc
      721 aaggagtatg aaaatggctg aacatcgagg tggtaaaggt aacttcgctg aagacccgca
      781 gcgcgcttcc gaagccggca agaaaggcgg gagcatgagc ggcggcaact tcagaaacga
      841 tcctcagcgc gcctctgagg ccggtcgcaa gggtggccag aacagccacg gcggccgtaa
      901 ctgagtccta gtagttcgag ggcggggcag atgcttcgct ctcgcggccg gcgccgtcgt
      961 ccccaggcac cggcttcccc tcttctccct cgatctcctc ttcgccgaac gtgttgtccc
     1021 agatcagccg cgggtcgaag gtgaccgccg cgagcatggt caggatcacc acgcaggaaa
     1081 aggccgccgc ccccaggttt ggttcgatgc tggcgagatt gccgaagttg accagcgcca
     1141 cgaggatggc gatgacgaag atgtcgagca tggaccagcg gccgatccat tcgatgaagc
     1201 ggtacatcag gatgcgctgc cgggccgaca tcggctgatg tcgctgcacc gaataaagca
     1261 gcaaagcgat gccgaccagc ttgaaggtcg gcaccaggat gctggcgacg aacaccacca
     1321 gcgcgatcgg caccatgccc gcgtgcacca gctccagcac cccggccatg atggtcgagg
     1381 gcgcaccctt gccgagaaaa ttcacggtca tgatcggcag cacgttggcc gggatgtaga
     1441 ggatcgcggc ggtcaccagc agcgcccagg tgcgcgcgat gctgtcgggc cggcgcgcat
     1501 gcaggcgcgc cccgcagcgg gtgcagtgct gaacctcgcc ctcgcgcagg tattccagct
     1561 tgtggcattc gctacagacg atgatgccgg catcaagtgc gcgcatggcc gtcctccttc
     1621 tcgctcaggg cgtcccacac ctggtgcggc gacatggtga cctccagcca cacctgggtg
     1681 agcatcagcg cgacgaagca gcccaggcct acacccaggt gcagctcggc catgtccagc
     1741 agcttgaccg ccgacaccag gatgccgaat aggtagacct cgagcattcc ccactcgcgc
     1801 atgtggtggt agacccggta ccagtagcag gcggcggggc gcagctcggc gtacggcatc
     1861 gccagcagga cgaacagctg gcacagcagc ttcatcagcg gcaccagcat gctgcacagc
     1921 agcaccacca gggcgatgcc ctccatgccc gcgttgtaca gtcccagcac cccgctccag
     1981 accgtatcca cggcgttctg gccgagcaga ttgaggctga tgatgggcag gaaattggcc
     2041 ggcacgaaca ggatgagcgc ggtcagcacc agggccaggg accgccggcg catgtgcgag
     2101 cggtgggtga ccagctcgaa gccgcagcgc gggcagcagg ccttctgctc aaggccgacg
     2161 cgcggatgac gcatcagcag atcgcactca tggcaggcga tcagctcttc cagtggcggc
     2221 agcgattgag tcatcccgta cctcgcgtcg gctaatgctc gagttggaca acgcagatta
     2281 gcgccagtga ccgccgaaag gccaacgctc ggtcagtcgc ggtccagcag gtggaagcgc
     2341 ggcagcgaca ggtgccagcg gatggcggcc aggcgcgtca gcagcacggt caacatggcg
     2401 atgccggtgt ccagccaatg tggtgtctgc agttcgcgca gggcgatgaa caccagcgag
     2461 ccgaggatac aggcggtggc gtagatctcc ttctggaaga tcagcgggat ctcgttgcag
     2521 atcacgtcgc gcatcacccc gccggccaca ccggtcatga cacccatgat caccgcggtg
     2581 ctgtacggga cgttgtgctg cagcgccacc tcggtgccga tcacggtgaa caccgccagg
     2641 ccgaaggcgt cggcgatcaa caggccgcgt tcgtgaatgg gctgggtcag gcgcacccag
     2701 agcacggtgc cgacggccgc cgcggaggcg agcaggatgt aggtgtcgtt acgaatccag
     2761 ctgaccggat gattgtccag gatgaggtcg cgcagggtgc cgcctccgag ggcggtgatc
     2821 acggcgatga ccagcacgcc gaacaggtcc atggacttgc gtccggccat cagcgcgccg
     2881 gtgatggcga agacggcgac gccgaacagg tcggcaaggt agaagagttg ctgcatggtc
     2941 acggtcgcag gatcggcggg gccgcggagt ttacctcagc cccgcc
//
LOCUS       DATIHC010000382         2028 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8043, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000382 DATIHC010000000
VERSION     DATIHC010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2028
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8043"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..678
                     /locus_tag="VLF16_06110"
     CDS             <1..678
                     /locus_tag="VLF16_06110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HSX70488.1"
                     /translation="GPIFVNFLLTDEINRAPAKVQSALLEAMAERQVSVGRSTYDLSP
                     LFLVMATQNPIEQEGTYPLPEAQLDRFLMHVKIGFPDASVERKILAQARGEALHGEAK
                     PEHRVSQQAIFAARQEILGLYMADAVEEYLVQLVMATRTPAKHDAELAEWIAYGASPR
                     GTIALDRCARAHAWLAGRDFVSPEDIQAVLFDVLRHRIILSFEAEAAGIDQDRVVQRI
                     LDVVAVA"
     gene            920..1861
                     /locus_tag="VLF16_06115"
     CDS             920..1861
                     /locus_tag="VLF16_06115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008150798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HSX70489.1"
                     /translation="MHVQPTPPGIRVSLAELIEIRHRVREVQLFSTPARRSPLIGLHH
                     SKLRGRGVDFDQVRVYQAGDDVRTIDWRVTARTQEPHTKLFHEERERPIFIMVEQSRR
                     LFFGSALQFKSVLAAQAASLFGWAALAHNDRIGGLVFGDAEHHEIKPRRSKQSLLQLL
                     NRLARANQALHPDAVGERDSFGLALRRAREVLRPGSLVVILCDERTLNDAAEQQLSLL
                     ARHTDLLLLPVSDPLDHDLPNAGLLRFVERGARLELDTRGGDLRVAYGGLAEQRRARW
                     QRLAQKLGVPLLALSTAEDLVEQLREHLSGPQAGKRP"
     gene            1858..>2028
                     /locus_tag="VLF16_06120"
     CDS             1858..>2028
                     /locus_tag="VLF16_06120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4381 family protein"
                     /protein_id="HSX70490.1"
                     /translation="MNPLDQLQPTIAPPPVPWWPPAPGWWALLVLVPLLLWGLWLLRR
                     RLPKRTRALEAQE"
BASE COUNT          308 a          759 c          671 g          290 t
ORIGIN      
        1 gggccgatct tcgtcaactt cctgctcacc gacgagatca accgggcccc ggccaaggtg
       61 cagtcggcgc tgctcgaggc aatggccgag cgccaggtca gcgtcggccg ctcgacctac
      121 gacctgtcgc cgctgttcct ggtaatggcc acgcagaacc ccatcgagca ggagggcacc
      181 tatcccctgc ccgaggccca gctcgaccgc ttcctgatgc acgtgaagat cggcttcccg
      241 gacgccagcg tggaacgcaa gatcctcgcc caggcccgtg gcgaggcgct gcacggcgag
      301 gccaagcccg agcaccgggt cagccagcag gcgatcttcg ccgcgcgcca ggagatcctc
      361 ggtctgtaca tggccgacgc cgtggaggaa tacctggtgc aactggtgat ggccacccgc
      421 accccggcca agcacgacgc cgagctggcc gagtggatcg cctatggcgc cagcccgcgc
      481 ggcaccatcg ccctggaccg ctgcgcccgc gcccacgcct ggctggccgg gcgcgacttc
      541 gtcagccccg aggacatcca ggcggtgctg ttcgacgtgc tgcgccaccg catcatcctg
      601 tcgttcgagg cggaagccgc cggcatcgac caggaccgcg tggtgcagcg catcctcgat
      661 gtggtggcgg tggcctgagt gaagccgcac gtcgtagccc ggatgcaatc cgggatgacc
      721 cgcacctcgc ccccggattg catccggact accggctgcg cccctctccc gtctgcggga
      781 aaggggtcgg agaagagggt acatggccat gcagccccct ccccgaccct ctcaaaccca
      841 tgggtggccg tagcccggat gcaatccggg aatacccatg ccgccctccc gctttgcatc
      901 cgggccacgg gctgacgcca tgcacgtgca acccactcca ccgggcattc gcgtcagcct
      961 cgccgagctg atcgagatcc gccatcgcgt acgcgaggtg cagctgttct ccaccccggc
     1021 ccggcgcagt ccgctgatcg gcctgcacca ctccaagctg cgcggccgcg gcgtcgactt
     1081 cgaccaggtg cgcgtgtacc aggccggcga cgacgtgcgc accatcgact ggcgcgtcac
     1141 cgcgcgcacc caggagccgc acaccaagct gttccacgag gagcgcgagc ggccgatctt
     1201 catcatggtc gagcagagcc gccggctgtt cttcggctcg gccctgcagt tcaagtcggt
     1261 gctcgccgcc caggccgcca gcctgttcgg ctgggccgcg ctggcgcaca acgaccgcat
     1321 cggcggcctg gtgttcggcg atgccgagca ccacgagatc aagccgcggc gcagcaagca
     1381 gagcctgctg cagctgctca accggctggc ccgcgccaac caggcgctgc acccggacgc
     1441 cgtcggcgag cgcgacagct tcggcctggc cctgcgccgc gcccgcgagg tgctgcgccc
     1501 cggcagcctg gtggtgatcc tgtgcgacga gcgcaccctg aacgacgccg ccgaacagca
     1561 gctgagcctg ctggcgcgcc acaccgacct gctgctgtta ccggtgtccg atccgctcga
     1621 ccatgacctg cccaacgccg gcctgctgcg cttcgtcgaa cgcggcgcgc ggctggaact
     1681 ggacacccgc ggcggcgacc tgcgcgtggc ctacggcggc ctcgccgaac agcgccgtgc
     1741 gcgctggcag cgcctggcgc agaagctcgg cgtgccgctg ctggcgctgt ccaccgccga
     1801 ggatctggtg gaacagctgc gcgaacacct gagcggaccg caggcgggca agcgtccatg
     1861 aatccactcg atcagctgca accaaccatt gccccgccgc cggtgccctg gtggccgccg
     1921 gcgcctgggt ggtgggcgtt gctggtgctg gtgccgttgc tgctctgggg cctgtggctg
     1981 ctgcgtcgcc gcctaccgaa acgcacgcgg gcgctggaag cgcaggag
//
LOCUS       DATIHC010000383         1698 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5849, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000383 DATIHC010000000
VERSION     DATIHC010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1698)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1698)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1698
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5849"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1231)
                     /locus_tag="VLF16_06125"
     CDS             complement(<1..1231)
                     /locus_tag="VLF16_06125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007161086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound PQQ-dependent dehydrogenase,
                     glucose/quinate/shikimate family"
                     /protein_id="HSX70491.1"
                     /translation="MTASPKLLLLARLLGFLLALTGIALVAGGIRLSDLGGSHYYLFA
                     GLSLLLIGALLLLRRAEALVVYALMLALSTLWALIEVGLDWWQLVPRLALWFAIGVLL
                     LPVNRALSSTLERSASSGSLMLALLLSGSVALYSLFDRGWEVPGHIARNGELAQSAAP
                     PAEEGDWPAWGRTHFGDRYSPLKRIDTSNVKNLELAWSYRTGDIPGPDDPHETTAENT
                     PLKVNGMLYVCTPHSQVIALDPDSGKEIWRFDPKLSTQNADSFKGWTHMTCRGVAYHE
                     TREERAAEAGQCPRRLFLPTADTRLMAISADTGKPCPGFGDNGAVDLTTGIGSFTPGG
                     YYSTSPPGVSRDLVIIGGHVTDNASVDEPSGVIRAYDAYDGHLVWNWDSGNPEQTEPL
                     PPGQTYTRNSPNMWSVMS"
     gene            complement(1245..>1698)
                     /locus_tag="VLF16_06130"
     CDS             complement(1245..>1698)
                     /locus_tag="VLF16_06130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007895707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="saccharopine dehydrogenase C-terminal
                     domain-containing protein"
                     /protein_id="HSX70492.1"
                     /translation="PCNDALLSLHELAGRNWQAQPRQRLLDEDIVGGVDELGVLLLGH
                     PRGAYWYGSRLSIERARELSPHNNATSLQVTATVMAGVIWAMAHPDRGILEPDQLPFD
                     EILALCSPYLGDVVGVYSDWTPLQDRERLFDEHLVRDDPWQFGNVRVD"
BASE COUNT          259 a          557 c          613 g          269 t
ORIGIN      
        1 ggctcatcac cgaccacatg ttcggcgagt tgcgggtgta ggtctgcccc ggcggcagcg
       61 gctcggtctg ctcaggattg ccgctgtccc agttccacac caggtggccg tcgtaggcgt
      121 catacgcgcg gatcactccg gacggctcgt ccaccgaggc attgtcggtc acgtggccgc
      181 cgatgatcac caggtcgcgg ctgacacccg gcggcgaagt ggagtagtag ccgcccggcg
      241 tgaagctgcc gatgccggtg gtcaggtcca ccgcgccgtt gtcgccgaag cccgggcagg
      301 gcttgccggt gtccgccgag atggccatca ggcgggtgtc ggcggtgggc aggaacagcc
      361 ggcgcgggca ttgcccggcc tcggcggcgc gttcctcgcg ggtctcgtgg taggccacgc
      421 cgcggcaggt catgtgcgtc cagcccttga aactgtcggc gttctgcgtg ctcagcttgg
      481 gatcgaagcg ccagatctcc tttccgctgt ccgggtccag ggcgatcacc tggctgtgcg
      541 gggtgcacac gtagagcatg ccgttgacct tgagcggggt gttctccgcg gtggtctcgt
      601 ggggatcgtc cgggccgggg atgtcgccgg tgcggtagct ccaggccagc tccaggttct
      661 taacgttgct ggtgtcgatc cgcttcagcg gcgagtagcg gtcgccgaaa tgcgtgcggc
      721 cccaggccgg ccagtcgcct tcctcggccg gcggcgcggc cgactgcgcc agctcgccgt
      781 tgcgggcgat gtgtccgggc acttcccagc cccggtcgaa cagcgaatag agggcgacgg
      841 agccggacag cagcaaggcg agcatcaggc tgccgctgct ggcactgcgc tcgagggtgc
      901 tgctcagcgc gcggttgacc ggcagcaaca gcacgccgat ggcgaaccac agcgccaggc
      961 gcggcaccag ttgccaccag tccaggccga cctcgatcag cgcccagagt gtcgacaggg
     1021 ccagcatcag cgcgtagacc accagcgcct cggcccggcg cagcagaagc agggcgccga
     1081 tcagcagcag gctgagcccg gcgaacaggt agtagtgtga gccgcccagg tcgctgaggc
     1141 ggatgccgcc cgccaccagc gcgatgccgg tcagggccag tagaaagccc agcaggcggg
     1201 ccagcaacag gagcttgggt gaagcggtca tcgtcgttcc tccgttaatc gacgcgaaca
     1261 ttgccgaact gccaagggtc gtcgcgcacc aggtgttcat cgaacaggcg ttcgcggtcc
     1321 tgcaggggcg tccagtcgct gtagacgccc accacgtcgc ccagataggg gctgcacagc
     1381 gcgagtatct cgtcgaaggg cagctggtcg ggctcgagaa tgccccggtc cggatgggcc
     1441 atggcccaga tcacgccggc catcacggtt gccgtgacct gcaggctggt ggcgttgttg
     1501 tgcgggctca gctcgcgcgc ccgctcgatg ctcaggcgcg agccgtacca gtaggcgcca
     1561 cgcggatggc cgaggagcaa cacgccgagc tcgtcgacgc cgccgacgat gtcttcgtcg
     1621 agcaggcgct ggcgcggctg cgcctgccag ttgcgtccgg ccagttcgtg cagcgagagc
     1681 agggcgtcat tgcagggc
//
LOCUS       DATIHC010000384         3457 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_5862, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000384 DATIHC010000000
VERSION     DATIHC010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3457)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3457)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3457
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5862"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1114)
                     /locus_tag="VLF16_06135"
     CDS             complement(<1..1114)
                     /locus_tag="VLF16_06135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013793241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSX70493.1"
                     /translation="MSQSLSTDILIVGGGIAGLWLNARLRALGYATVLVESGSLGGGQ
                     SLKSQGIIHGGAKYALHGALTGASEAIADMPRRWREAIEGHGELDLSGVRLLSEAHYL
                     WSPGSLAGNLTSFFASKAVRGRVDQVKGEQLPPALQHSKFKGKVYRLAELVLDVPGLI
                     ARLAELAGDSLLAGREIAPLRDGGELAGLQVDGREIRAQRIVFSAGSGNAELLAGLGL
                     EQPRQQLRPLHMVLVKGPSLKPLYAHCLGGGPKPRITVTSHPAADGQWVWYLGGDIAE
                     ADGVARDEAAQIRAAQKELGDLLPWVDLSSARWATLRVDRAEPAQSGLVRPDNAFLAE
                     QGRLLVGWPTKLALSPDFSDRVIVALERDGIAPGAHA"
     gene            complement(1160..1492)
                     /locus_tag="VLF16_06140"
     CDS             complement(1160..1492)
                     /locus_tag="VLF16_06140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HSX70494.1"
                     /translation="MSGYLYLAIAIVAEVIATTALKAVDGFSKPLPLILVVIGYGIAF
                     WMLSLVMKTIPVGVTYAIWSGLGIVLISIAGLLVYGQKLDLAALLGMALIIAGVLVIQ
                     LFSGSSGH"
     gene            1621..2895
                     /gene="waaA"
                     /locus_tag="VLF16_06145"
     CDS             1621..2895
                     /gene="waaA"
                     /locus_tag="VLF16_06145"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012077676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HSX70495.1"
                     /translation="MNRPLYTLILHLALPFIFLRLAWRAWRAPAYGQRIGERFAVGLP
                     AFRRGGIWIHAVSLGESIAAAPLIRELLARHPELPITVTCMTPTGSERIRALFGDRIQ
                     HCYLPYDLPWACARFIERLQPRLAVIMETELWPNHIHACHKRGIPVALANARLSERSA
                     RGYARFARLTAPMLAELDLIAVQTAAEAERFRRLGARSDGVEVTGSIKFDLSVDAALP
                     RSAAELRASWGAQQRPVWIAASTHLGEDEVVLAAHRQLLAERPDALLILVPRHPERFE
                     QAVESSRREGFATLRRSTGEAVTADTQVLVGDTLGELLFLYALADLAFVGGSLIANGG
                     HNLLEPAALGKPLLTGPHLFNFLEIAAQLRGAGDLLEVEDAAQLHAGLRLLFADPAEA
                     ARRTDAGLGVLRANQGALARLLAGLERLLARA"
     gene            complement(2869..3411)
                     /locus_tag="VLF16_06150"
     CDS             complement(2869..3411)
                     /locus_tag="VLF16_06150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003095684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HSX70496.1"
                     /translation="MTTLITHPLPILALGLALGPRVIPPRLLLAGFLFALLPDADMLA
                     FKFGIAYADAFGHRGFSHSLLFAGCCGVLGALACRLLRCGPLRAFCWIALATASHSLL
                     DAATDGGLGVAWLWPWSEQRHFLPWRPIEVSPFIHGFFSQRGLEVLVSEARWVWLPCL
                     ALALGGMALRGLLRPRQQAL"
BASE COUNT          518 a         1184 c         1243 g          512 t
ORIGIN      
        1 gagcgtgggc gcctggggcg atgccgtcgc gctcgagcgc gacgatgacc cggtcggaga
       61 aatccggcga cagcgccagc ttggtcggcc agcccaccag caggcggccc tgctcggcga
      121 ggaatgcgtt gtccgggcgt accaggccgg actgcgcggg ctcggcgcgg tcgacgcgca
      181 gggtggccca gcgggcgctg gacaggtcga cccagggcag cagatcgccc agctccttct
      241 gtgccgcgcg gatctgcgcg gcctcgtcgc gggccacgcc gtcagcctcg gcgatgtcgc
      301 cgccgaggta ccagacccac tggccgtcgg cggccgggtg gctggtcacg gtaatgcgcg
      361 gcttgggccc gccgcccagg cagtgggcgt acagcggctt caggctcggg cccttgacca
      421 gcaccatatg cagcgggcgc agctgctgcc tgggttgctc caggccaagg ccggcgagca
      481 gctcggcatt gccggagccg gcactgaaca cgatgcgctg ggcgcggatc tcgcggccgt
      541 cgacctgcag gccggccagc tccccaccgt cgcgcagcgg cgcgatctcc cggccggcca
      601 gcaggctgtc gccggccagc tcggccaggc gggcgatcag cccgggcacg tcgagcacca
      661 gctcggccag gcggtagacc ttgcccttga atttcgaatg ctgcagcgcc ggcggcagtt
      721 gctcgccctt gacctggtcg acccggccgc gcaccgcttt gctggcgaag aagctggtca
      781 ggttgccggc caggctgccc ggtgaccaca ggtagtgggc ctcggacaac aggcgcacgc
      841 cggacaggtc cagctcgcca tggccctcga tggcctcgcg ccagcgccgc ggcatgtcgg
      901 cgatggcctc ggaggccccg gtcaatgcgc cgtgcaaggc gtacttggcg ccgccgtgga
      961 tgatgccctg ggacttcagg ctctggccgc cgccgaggct gccgctctcc accaggacgg
     1021 tggcgtagcc gagcgcgcgc aggcgggcgt tgagccagag gccggcgata ccgccgccga
     1081 cgatcaggat atcggtgctg agggactgtg acatgccggg gctcgctgcg aaacaggcgc
     1141 gcagtataac cggccgcgct cagtggccgc tgctgccgga gaacagctgg atcaccagta
     1201 cgcccgcgat gatcagggcc atgcccagca gcgccgccag gtcgagcttc tggccgtaga
     1261 ccagcaggcc ggcgatgctg atcagcacga tgcccaggcc cgaccagatg gcataagtca
     1321 cgcccaccgg gatggtcttc atcaccaggc tgagcatcca gaacgcgatg ccgtagccga
     1381 tcaccaccag gattagcggc agcggcttgc tgaagccgtc cacggccttc agtgcggtgg
     1441 tggcgatgac ttcggcgacg atggcgatgg ccaggtacaa ataaccgctc atggacatgc
     1501 tctccggggg atcggcgcgc attgtggcac gccggtcggg cgccaggccc gcgctgttgg
     1561 ggattgagcg gagccgcgcg gcgtaggtgg atgccccttg gcctgctaag ctgcgcgccc
     1621 atgaacagac cgctctatac cctgatcctg catctggccc tgccgttcat cttcctgcgt
     1681 ctggcgtggc gcgcctggcg tgctccggcc tacgggcaac gcatcggcga gcgcttcgct
     1741 gtcggcctgc cggcgtttcg tcgcggtggt atctggattc acgcggtgtc gctgggcgag
     1801 agcatcgccg ccgcgccgct gatccgagag ctgctggcgc gccatcccga gctgccgatc
     1861 accgtcacct gcatgacgcc gaccggctca gagcgcatcc gggcgctgtt cggcgaccgc
     1921 atccagcact gctacctgcc ctacgatctg ccttgggcct gcgcccgttt catcgagcgc
     1981 ctgcagccgc ggctggcggt gatcatggag accgagctgt ggcccaacca tattcatgcc
     2041 tgccataagc gcggcattcc tgtggcgctg gccaatgcgc ggctgtccga gcgctcggcg
     2101 cgcggctatg cgcgttttgc ccggctgacc gcgccgatgc tggccgagct ggacctgatc
     2161 gcggtgcaga ccgccgccga ggccgagcgc ttccgtcggc tgggtgcgcg gtccgatggt
     2221 gtcgaggtga cgggctcgat caagttcgac ctgagcgtag acgccgcgct gccgcgcagc
     2281 gcagccgagc tgcgcgcctc ctggggcgcg cagcagcggc cggtatggat cgccgccagc
     2341 acccatctgg gtgaggacga agtggtgctc gcggcccatc gccaattgct cgccgagcgg
     2401 ccggatgcat tgctgatcct ggtgccacgc catcccgagc gtttcgagca ggccgtcgag
     2461 tcgagtcgac gcgagggttt cgccacgctg cgccgctcca ccggcgaggc ggtgacggcg
     2521 gatacccagg tgctggtcgg cgataccctc ggcgagctgc tgttcctcta tgctctggcc
     2581 gacctggcct tcgtcggtgg cagcctgatt gccaacggcg gacataacct gctggagccg
     2641 gcggcgctgg gcaagccgtt gctcaccggc ccgcacctgt tcaactttct cgaaatcgct
     2701 gcccagctgc gtggcgccgg cgatctgctg gaggtcgagg atgcggcgca gctgcacgcg
     2761 gggctgcgcc tgctgttcgc cgatccggcc gaggcggcgc ggcggaccga tgccgggctg
     2821 ggcgtactgc gcgccaatca gggcgccctg gcgcgcctgc tcgccggtct agagcgcctg
     2881 ctggcgcggg cgtagcaatc cgcgcagggc catgccaccg agggctagcg ccaggcaggg
     2941 cagccagacc cagcgcgcct ccgacaccag cacttcgagg ccgcgctggc tgaagaagcc
     3001 atgaatgaag ggcgagacct cgatcggccg ccagggcagg aagtggcgct gctcgctcca
     3061 tggccatagc caggccacgc cgaggccacc gtcggtggcc gcatccagca ggctgtgcga
     3121 ggcggtggcc agggcgatcc agcagaaggc cctgagcggg ccacagcgca gcagccggca
     3181 ggcgagcgcg cccaggacac cgcagcatcc ggcgaacagc agagaatggc tgaaaccgcg
     3241 gtggccgaag gcgtcggcgt aggcgatgcc gaacttgaag gccagcatgt cggcgtccgg
     3301 cagcagggcg aacaggaaac cggccagcag caggcgcggc ggaatcaccc gcggcccgag
     3361 tgccaatccc agggccagga tcggcagcgg gtgggtgatc agcgtggtca cgtgtgttcg
     3421 tgcatgcgcg ccagctggcg ctccaacagc gagggat
//
LOCUS       DATIHC010000385         2756 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29070, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000385 DATIHC010000000
VERSION     DATIHC010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2756)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2756)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2756
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29070"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1410)
                     /gene="pepN"
                     /locus_tag="VLF16_06155"
     CDS             complement(<1..1410)
                     /gene="pepN"
                     /locus_tag="VLF16_06155"
                     /EC_number="3.4.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HSX70497.1"
                     /translation="MRTEQPKMIYLKDYQVPDYLIDETHLTFELFEDHTLVHAQLVMR
                     RNPEAGAGLPPLVLDGQQLELISVALDDRELSAADYQLTDSHLTLQPTQASFVIDSSV
                     RIHPESNTALEGLYKSSGMFCTQCEAEGFRKITYYLDRPDVMSTFTTTLSAEQHSYPV
                     LLSNGNPIASGSEEGGRHWATWEDPFKKPAYLFALVAGDLWCVEDTFTTMSAREVTLR
                     IYVEPENIDKVQHAMTSLKKSMKWDEEVYGREYDLDIFMIVAVNDFNMGAMENKGLNI
                     FNSSCVLARAETATDAAHQRVEAVVAHEYFHNWSGNRVTCRDWFQLSLKEGFTVFRDA
                     EFSADMNSRTVKRIEDVAYLRTHQFAEDAGPMAHPVRPDAFMEISNFYTLTVYEKGSE
                     VLRMIHTLLGAETFRKGSDLYFARHDGQAVTCDDFVKAMEDASGRDLTQFKRWYSQAG
                     TPRLDVREAYDAAAQTYTLT"
     gene            complement(1470..2297)
                     /locus_tag="VLF16_06160"
     CDS             complement(1470..2297)
                     /locus_tag="VLF16_06160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009621085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2797 domain-containing protein"
                     /protein_id="HSX70498.1"
                     /translation="MVELARGSLSKMKAQLAAPVQYAFRLGDEEVPVNPLIGKTLRLE
                     YLGAIHCSHCGRRTKTSFSQGYCYPCMQKLAQCDICIMSPERCHYEAGTCREPGWGEQ
                     FCMTDHVVYLANSSGVKVGITRATQIPTRWIDQGATQALPIMRVATRQQSGFVEDLLR
                     SQVADKTNWRALLKSDAAPVDLLAIRDRILDICADGMHALQQRFGIQAVQPLIEQPVV
                     EISYPIEAYPAKITSFNLDKDPLVEGTLLGIKGQYLMFDTGVINIRKYTAYQLAVHH"
     gene            complement(2297..2569)
                     /locus_tag="VLF16_06165"
     CDS             complement(2297..2569)
                     /locus_tag="VLF16_06165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1315 family protein"
                     /protein_id="HSX70499.1"
                     /translation="MSSFAEMIENITPDIYQSLKLAVEIGKWPDGRRLTQEQKELSLQ
                     AMIAWEIQNLPEEERTGYMGTSECGSKSEPIPNLLYTSANATDTLH"
     gene            complement(2610..>2756)
                     /locus_tag="VLF16_06170"
     CDS             complement(2610..>2756)
                     /locus_tag="VLF16_06170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HSX70500.1"
                     /translation="MLIWLVVCLSGVIDTLGFGSIANAAHVGGLVAGCAAGLVGGALA
                     RVRR"
BASE COUNT          440 a          842 c          941 g          533 t
ORIGIN      
        1 ggtcagagtg taggtctgcg cggcggcgtc ataggcctcg cgaacgtcca gacgcggcgt
       61 gccggcctgg ctgtaccagc gcttgaactg ggtcaggtcc cggccgctgg cgtcctccat
      121 ggccttgacg aagtcgtcgc aggtcacggc ctggccgtcg tggcgggcga agtacaggtc
      181 cgagcccttg cggaaggtct ccgcgccgag cagggtgtgg atcatgcgca gcacttccga
      241 gcccttctcg tagacggtca gggtgtagaa gttggagatc tccatgaagg cgtccgggcg
      301 caccgggtgg gccatcgggc cggcatcttc ggcgaactgg tgggtgcgca ggtaggccac
      361 gtcctcgatg cgcttgaccg tgcgcgagtt catgtcggcc gagaactcgg catcgcggaa
      421 cacggtgaag ccttccttga gcgacagctg gaaccagtcg cggcaggtca cgcggttgcc
      481 cgaccagttg tggaagtact cgtgtgccac caccgcctcg acgcgctggt gggcggcgtc
      541 ggtggccgtc tccgcgcggg ccagcacgca gctggagttg aagatgttga ggcccttgtt
      601 ctccatggcg cccatgttga agtcgttgac cgcgacgatc atgaagatgt ccaggtcgta
      661 ctcgcgcccg tacacctcct cgtcccactt catcgacttc ttcaggctgg tcatggcgtg
      721 ctgcaccttg tcgatgttct ccggctcgac gtagatgcgc agggtgactt cacgggcgct
      781 catggtggtg aaggtgtctt ccacgcacca gaggtcgccg gcgaccaggg caaacaggta
      841 ggccggcttc ttgaacggat cttcccaggt cgcccagtga cggccgccct cctcgctgcc
      901 gctggcaatc ggattgccgt tggagagcag caccggatag ctgtgctgct cggcgctgag
      961 cgtggtggtg aaggtgctca tcacgtccgg gcggtcgagg taataggtga tcttgcggaa
     1021 gccctcggcc tcgcactggg tgcagaacat gccactggac ttgtacaggc cttccagcgc
     1081 ggtgttgctc tccgggtgga tgcgcacgct gctgtcgatg acgaagctcg cctgggtcgg
     1141 ctgcagggtc aggtggctgt cggtcagctg gtagtcggcc gcgctcagct cgcggtcatc
     1201 cagggccacg ctgatcagct ccagctgctg gccgtccagc accagcggcg gaaggccggc
     1261 gccggcctcg ggattgcggc gcatcaccag ctgggcatgc accagggtat ggtcctcgaa
     1321 cagctcgaag gtcaggtggg tctcgtcgat caggtagtcg gggacctggt agtccttgag
     1381 gtagatcatc ttcggctgtt cggtacgcat ggcttgtggc ccttttcttg tgcgggccgg
     1441 cgatacggcc cgttgacgat gattcgtggt cagtggtgca cggccagctg gtaggcggtg
     1501 tacttgcgga tgttgatcac cccggtgtcg aacatcaggt actgaccctt gatgccgagc
     1561 aaggtgcctt ccaccagcgg gtccttgtcc aggttgaagc tggtgatctt ggccgggtaa
     1621 gcctcgatcg gataactgat ctccaccacc ggctgctcaa tgagcggctg cacggcctgg
     1681 ataccgaagc gctgctgcag ggcgtgcatg ccgtcggcgc agatgtcgag gatacggtcg
     1741 cggatcgcca gcaggtccac cggagcggca tcgctcttca gcaacgcacg ccagttggtc
     1801 ttgtccgcca cctggctgcg cagcaggtct tcgacgaagc cggactgctg gcgggtggcg
     1861 acgcgcatga tcggcagcgc ctgggtcgcg ccctggtcga tccagcgcgt gggaatctgc
     1921 gtggcgcggg tgatgccgac cttcaccccg gacgagttgg ccaggtagac cacgtgatcg
     1981 gtcatgcaga actgctcgcc ccagcccggt tcacggcagg tgccggcctc gtagtggcag
     2041 cgttccggac tcatgatgca gatgtcgcac tgcgccaatt tctgcatgca cgggtagcaa
     2101 tagccctggc tgaagctggt cttggtccgg cgtccgcaat ggctgcagtg gatcgcgccg
     2161 aggtattcca ggcgcagggt cttgccgatc agcgggttga ccggcacttc ctcgtcgccc
     2221 aggcgaaagg cgtactgcac cggcgcagcc agctgcgcct tcatcttgct cagggagccg
     2281 cgggccagct cgaccatcag tgcagggtgt ccgtggcgtt ggcggaggtg tacagcagat
     2341 tggggatcgg ctcggacttg gaaccgcact ccgaggtgcc catgtaaccg gtgcgctctt
     2401 cctcgggcag attctggatc tcccaggcga tcatggcctg cagcgacagc tccttctgct
     2461 cctgggtgag cctgcggccg tccggccact tgccgatctc caccgccagc ttgaggctct
     2521 ggtagatatc gggagtgatg ttctcgatca tttcggcaaa ggacgacatc gcgggctcca
     2581 acagcgggaa gctaaacagg tgggcaagtt taccggcgca cgcgcgccag tgcaccgccg
     2641 acgagacccg cggcgcaacc ggcgaccagc ccgccgacat gggcggcgtt ggcgatggag
     2701 ccgaagccca gggtgtcgat caccccgctc aggcagacca ccagccagat cagcat
//
LOCUS       DATIHC010000386         1719 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33790, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000386 DATIHC010000000
VERSION     DATIHC010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1719
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33790"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1340)
                     /locus_tag="VLF16_06175"
     CDS             complement(<1..1340)
                     /locus_tag="VLF16_06175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017362753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase HerA-like domain-containing protein"
                     /protein_id="HSX70501.1"
                     /translation="MPVADSLILGADPQGQPVAQALRLANRHGLVAGATGTGKTVTLQ
                     RLAEAFSDAGVAVFAADIKGDFCGLGAVGNPQGKVAERIASMPWLHHTPQGYPVTLWD
                     VAGKSGHPLRTTLSEMGPLLLGNLLELTDSQQAALYAAFQVADREGLLLLDLKDLKAL
                     LNHLKDHPELLGEDRALFAGASAQALLRRLATLEQQGAEMLFGEPALQLEDILHPDRD
                     GRGRIHLMDASRLVHEAPKVYATFLLWLLAELFEQLPERGDADKPVLALFFDEAHLLF
                     ADTPKALQERLEQVVRLIRSKGVGVYFVTQSPGDLPDEVLAQLGLRIQHGLRAFTAKE
                     QKSLRAVADGFRPNPSFDSLSVLTELGIGEALVGTLEEKGTPAMVQRVAIAPPQSRIG
                     PLSEAERAALLRTSPQASRYDRPVDRESAYEMLMARAAQAPVEAAPAGKGASAPA"
     gene            1468..>1719
                     /locus_tag="VLF16_06180"
     CDS             1468..>1719
                     /locus_tag="VLF16_06180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003163016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HSX70502.1"
                     /translation="MTQNLKFSHKILLAASLVVIAAFTLFTLYNDYLQRNAIRADLES
                     ELRSLGDVTASNIQNWLSGRILLVENIAQSMQDDTPDTLA"
BASE COUNT          305 a          573 c          560 g          281 t
ORIGIN      
        1 gccggtgcgc tcgcaccctt gccggccggc gccgcttcta caggtgcctg agcggcgcgg
       61 gccatgagca tttcgtaggc ggattcgcga tccaccggcc tgtcgtagcg actggcctgg
      121 ggcgacgtgc gcagcagcgc cgctcgctcc gcctcgctca gcgggccgat acgcgactgc
      181 ggcggagcga tggcgacgcg ctggaccatc gccggcgtgc ccttctcttc cagggtgccg
      241 accagcgcct cgccgatacc cagctcggtg agcacactca ggctgtcgaa cgacgggttc
      301 gggcggaagc catcggccac cgcacgcagc gacttctgct ccttggcggt gaaggcgcgc
      361 aggccgtgct ggatgcgcaa gccgagttgt gccagcacct catccggcag gtcacccggc
      421 gactgggtga cgaagtagac gccgactccc ttggagcgga tcagccgcac cacctgctcc
      481 aggcgctcct gcagcgcctt gggagtgtcg gcgaaaagca gatgcgcctc gtcgaagaac
      541 agcgccagca cgggcttgtc ggcatcgcca cgctcgggca gctgctcgaa cagctcggcc
      601 agcagccaca gcaggaaggt cgcatagacc ttgggcgcct cgtggaccag acgactggca
      661 tccatcagat gaatgcgtcc gcggccgtca cgatcggggt gaagaatgtc ctccagctgc
      721 agggccggct cgccgaacag catttcggcg ccctgctgct ccagggtcgc caggcgccgc
      781 aacagcgcct gggccgaggc gccggcgaac aacgcgcggt cctcgccgag caactcggga
      841 tgatccttga ggtggttgag cagcgccttg aggtccttca ggtcgagcag cagcaaacct
      901 tcgcggtcgg ccacctgaaa ggcggcatag agcgcggcct gctgactgtc ggtgagctca
      961 agcaggttgc ccagcagcag tgggcccatc tcgctgagcg tggtgcgcaa cggatgcccg
     1021 cttttgccgg ccacatccca cagcgtcacg gggtagccct ggggcgtgtg atgcaaccag
     1081 ggcatgctgg cgatccgctc ggcgaccttg ccttggggat taccgaccgc gcccagaccg
     1141 cagaagtcgc ccttgatgtc ggcggcgaat accgccacac cggcatcgct gaacgcctcg
     1201 gccaggcgtt gcagcgtcac cgtcttgccg gtgccggtgg cgccggccac caggccgtgg
     1261 cggttggcca ggcgcagagc ctgggcgacg ggctgaccct gggggtcggc acccagaatt
     1321 agagaatcgg ctacgggcat cttgccatcc ctctggctaa agctttactg cagttatgtc
     1381 gctatagagg tgtcactcga aagatccgcg cgtcaccgct ccgttgataa caagactgct
     1441 gccagacact accggacgca agtagccatg actcagaacc tgaagttcag ccacaagatc
     1501 ctgctcgcgg cctcgctggt agtgatcgct gctttcactc tgttcaccct gtacaacgat
     1561 tacttgcaac ggaatgcgat tcgcgcggac ctggaaagcg aactgcgcag cctcggggac
     1621 gtcaccgcga gcaatatcca gaactggctc tcggggcgca tcctgctggt ggagaacatc
     1681 gcgcagagca tgcaggacga cacgcccgat accctggcc
//
LOCUS       DATIHC010000387         3508 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10412, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000387 DATIHC010000000
VERSION     DATIHC010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3508
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10412"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..848
                     /locus_tag="VLF16_06185"
     CDS             <1..848
                     /locus_tag="VLF16_06185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008061472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HSX70503.1"
                     /translation="AVNLICGRGREVGSYLVGHPGVDQIVFTGSVPTGQSILRDAAEH
                     AIPSVMELGGKSAAIAFADVDRRQLLAGVKSGIFFNAGQVCSAMSRLLVQREIYEEIV
                     EAVVELAEGLSVGRGQDNPDLTPVVSAAQLSGIENLCRRAVDEGAVAATGGEAFSDRA
                     GHFMRPTVFRDVRPDMCIAQEEVFGPVLAVIPFDSEDEALAIANGTEFGLVAGVFTQD
                     ISRAMRCARRLKAGQVFVNEWYAGGIETPFGGVGLSGFGREKGQEALYSYVRTKNVAI
                     RVSGE"
     gene            854..1018
                     /locus_tag="VLF16_06190"
                     /pseudo
     CDS             854..1018
                     /locus_tag="VLF16_06190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254038.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="rubredoxin"
     gene            1007..2260
                     /locus_tag="VLF16_06195"
     CDS             1007..2260
                     /locus_tag="VLF16_06195"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSX70504.1"
                     /translation="MLDISPVVAAAASTAVPVSQPAAVAPVAAPILARQPIVIIGSGY
                     AGYGLAQALRKADPKVEIRVLTQESGHLYSKPALSIGLAQGKSAEVLAGEAPLDIERR
                     LNIRIYPHCTVERIDAAARRLSTNFGEMEYGQLVLASGASPIRLPIEGAGDALHSVNN
                     LHDYHGFRQRLIGIRRIAILGDGLIGCEFANDLAASGFEVSVIGLGQWPMARLLPAEA
                     GQQLQSALAELGVSWYLQNSVQRIETRGEGYRLSLTQGQQIEADLVLSAVGLRPNLEL
                     AAAAGLAVDRGIQVDAQLQTSQPGIYALGDCIEIEGQLLPYLAPITQGIQALSQTLLG
                     KPTAVSYPLMPVTVKTPAAPLCILPPAAGVAGEWRCTPTDDGLCAGFFSENEALNGFV
                     LLGRQAQAQRSNWLQSCQLAQRAVA"
     gene            2271..>3508
                     /locus_tag="VLF16_06200"
     CDS             2271..>3508
                     /locus_tag="VLF16_06200"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010678655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HSX70505.1"
                     /translation="MSNKKINLPYDDASCGWYSALPPQPTCRRLQGEQHADFAVIGAG
                     FAGLAAARRLAEHHPEARILLVDAQRVGYGASGRNSGFVIDLPHKFALEHPDPAHKQR
                     LLGLNRAAIDQLQTLVRRHGIDCQWSHAGKYQGAVGERGMAYLDHFETLMSDLGEPFR
                     RVDADELAKVTGSRHYSGAIYTPGCYLMQPAALVTGLGRSLPGNVELLEESPIQRLER
                     DGQGGWILHGSQGQIRTPQLLLGTSIFTQEFGYLRNRLLPVMTFASWTRPLSDAELQA
                     YGGRLDWGLTPADHAGTTVRMTQDRRLIIRNTYKHVPKYGQSTSEAMRAGVRDDHRKA
                     FLARFPQLADVPFTHTWGGVYAISRNFTNFFGSLADGVYASACDNGVGAAWGTISGTL
                     LADLAVGADSAQLRDIQAVTG"
BASE COUNT          530 a         1262 c         1216 g          500 t
ORIGIN      
        1 gcgcggtcaa cctgatctgc ggccgcggcc gcgaggtcgg cagctacctg gtcggccatc
       61 ccggcgtcga ccagatcgtc ttcaccggct cggtgccgac cggccagagc atcctgcgcg
      121 acgccgccga gcacgccatt cccagcgtca tggagctggg cggcaagtcc gcggccatcg
      181 ccttcgccga cgtcgatcgc cggcagctgc tggccggcgt caagagcggc atcttcttca
      241 acgccgggca ggtctgctcg gccatgtcgc ggctgctggt gcagcgcgag atctacgagg
      301 aaatcgtcga ggccgtggtc gagctggccg aagggctcag cgtcggccgc ggccaggaca
      361 acccggacct caccccggtg gtcagcgccg cgcagctgtc cggcatcgag aacctgtgtc
      421 ggcgcgcagt cgatgagggc gcggtggcgg ccaccggcgg cgaggccttc agcgaccggg
      481 cggggcactt catgcgcccc acggtgttcc gcgacgtgcg cccggacatg tgcatcgccc
      541 aggaggaagt gttcggcccg gtgctggcgg tgatcccgtt cgacagcgag gacgaggccc
      601 tggcgattgc caacggcacc gagttcggcc tggtcgccgg cgtgttcacc caggacatca
      661 gccgcgccat gcgctgcgca cggcggctca aggccggcca ggtgttcgtc aacgagtggt
      721 acgccggcgg catcgagacg ccgttcggcg gcgtcggcct gtccggcttc ggccgcgaga
      781 agggccagga ggcgctgtac agctacgtgc gtaccaagaa cgtggccatt cgcgtgagcg
      841 gggagtgacc gacatgttca agacttggct ttgtgtggtg tgcggcctga tctacgacga
      901 ggcgctcggc tggccgcagg acggcatcgt cgccggcacc cgctgggacg acgtgcccga
      961 ggactggaag tgccccgagt gcggggtcgg caaggacgat ttcgagatgc tcgacatcag
     1021 cccggtggtc gccgctgcgg ccagcaccgc ggtgccggtg agccagcccg cggccgtggc
     1081 gccggtggcg gcgccgatcc tggcgcgcca gccgatcgtc atcatcggca gcggctacgc
     1141 cggctacggc ctggcccagg ccttgcgcaa ggcggacccg aaagtggaga tccgcgtgct
     1201 gacccaggaa tccggccacc tgtattccaa gccggcgctg tccatcggcc tggcccaggg
     1261 caagagcgcc gaggtcctgg ccggcgaggc gccgctggac atcgagcggc gcctgaacat
     1321 ccgcatctat ccgcactgca cggtcgagcg catcgacgcg gcggcgcggc gcctgagcac
     1381 caacttcggc gagatggagt acggccagct ggtgctggcc agcggcgcct cgccgatccg
     1441 gctgcccatc gagggcgccg gcgatgccct gcacagcgtc aacaacctgc acgactacca
     1501 cggcttccgc cagcgcctga tcggcatccg gcgcatcgcc atcctcggtg acggcctgat
     1561 cggctgcgag ttcgccaacg acctcgcggc cagcggcttc gaggtcagcg tcatcggcct
     1621 ggggcagtgg ccgatggcgc gcctgctgcc ggccgaggcc ggccagcagc tgcagtcggc
     1681 cctggccgag ctgggcgtga gctggtacct gcagaattcg gtgcagcgca tcgagacgcg
     1741 gggcgagggc tatcgcctga gcctgaccca gggtcagcag atcgaggccg atctggtcct
     1801 cagcgccgtc ggcctgcggc cgaacctgga gctggccgcc gccgccgggc tggccgtgga
     1861 tcgcggcatc caggtggatg cgcagctgca gacctcgcag ccgggcatct acgccctcgg
     1921 cgactgcatc gagatcgagg ggcagctgct gccgtacctg gcgcccatca cccagggcat
     1981 ccaggcgctg agccagaccc ttctgggcaa gccgaccgcc gtcagctacc cgctgatgcc
     2041 ggtgacggtg aagaccccgg cggcgccgct gtgcatcctg ccgccggccg ccggtgtcgc
     2101 cggcgaatgg cgctgcacgc cgaccgacga cggcctgtgc gccggcttct tcagcgagaa
     2161 cgaggcactg aacggcttcg tcctgctcgg tcgccaggcg caagcccaac gcagcaactg
     2221 gctgcagtcc tgtcagctcg cccaacgcgc tgtcgcctga ggccgccatc atgtctaaca
     2281 agaagattaa cctgccttac gacgacgcca gctgcggctg gtacagcgcc ctgccgccgc
     2341 aaccgacctg ccgccgcctg cagggcgaac agcatgccga cttcgcggtg atcggcgccg
     2401 gcttcgccgg cctggccgcc gcacggcgcc tggccgaaca ccatcccgag gcgcgcatcc
     2461 tgctggtgga cgcccagcgg gtcggctacg gcgcctccgg gcgcaactcc ggcttcgtca
     2521 tcgacctgcc gcacaagttc gccctggaac acccggaccc ggcgcacaag cagcgcctgc
     2581 tcggcctcaa ccgcgccgcc atcgaccagt tgcagacgct ggtccggcgc cacggcatcg
     2641 actgccagtg gtcccatgcg ggcaaatacc agggcgcggt cggcgagcgc ggcatggcct
     2701 atctcgacca tttcgagacg ctgatgagcg acctcggcga gccgttccgc cgcgtcgacg
     2761 cggacgaact ggccaaggtc accggcagcc gccactacag cggcgcgatc tacaccccgg
     2821 gctgctacct gatgcagccg gcggcgctgg tcaccggcct ggggcgctcg ctgccgggca
     2881 acgtcgagct gctggaggag tcgccgatcc agcgtctgga gcgcgacggc cagggcggct
     2941 ggattctgca cggcagccag ggccagatcc gcacgccgca actgctgctg ggcaccagca
     3001 tcttcaccca ggagttcggc tacctgcgca accgcctgct gccggtgatg accttcgcca
     3061 gctggacgcg cccgctgagc gatgccgagc tgcaggccta cggcggccgg ctcgactggg
     3121 gcctgacccc ggccgaccac gccggcacca ccgtgcgcat gacccaggac cgccggctaa
     3181 tcatccgcaa cacctacaag cacgtgccca agtacggcca gagcaccagc gaggcgatgc
     3241 gcgccggcgt gcgcgacgac caccgcaagg ccttcctggc gcgcttcccg cagctggcgg
     3301 acgtgccgtt cacccacacc tggggcgggg tctacgccat ctcgcgcaac ttcaccaact
     3361 tcttcggctc gctggccgac ggggtctacg cctcggcctg cgacaacggt gtgggcgcgg
     3421 cgtggggcac catttccggc acgctgctgg cggacctggc ggtcggcgcg gattcggccc
     3481 agttgcgcga tatccaggcg gtcactgg
//
LOCUS       DATIHC010000388         2253 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_16899, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000388 DATIHC010000000
VERSION     DATIHC010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16899"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..470
                     /locus_tag="VLF16_06205"
     CDS             <1..470
                     /locus_tag="VLF16_06205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DapH/DapD/GlmU-related protein"
                     /protein_id="HSX70506.1"
                     /translation="VRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKG
                     SDLGGGCSTMGTLSGGGNIVISVGEGCLIGANAGIGIPLGDRNIVEAGLYVTAGTKIA
                     VLDDQNNLVKVVKGRDLAGQADLLFRRNSQTGAVECKTNKSAIELNEALHAHN"
     gene            766..1971
                     /locus_tag="VLF16_06210"
     CDS             766..1971
                     /locus_tag="VLF16_06210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017674797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HSX70507.1"
                     /translation="MSLISPWRDDFPGVSALAAEGQTYLDSAATAQKPQAMLDSLLGY
                     YASGAANVHRAQHLPGERATRAFEATREKAARWLNAASTEEIVFTRGTTESLNLLAYG
                     LEHLLQPGEQIAVSALEHHANLLPWQQLAERRGLELLVLPLDADGQIDLDQAAALIGP
                     RTRLLAVSQLSNVLGRWQPLPELIALARAHGALSVVDGAQGVVHGRHDVRALGCDFYV
                     CSSHKLYGPDGVGLLHGRQEALAQLRHWQHGGEMVLHADYHAARFRPAPLGFEAGTPP
                     IAGIIAFGATLDYLAGLDAAAVVGHEAALHAKLLAGLAVRDGVRLLGEPQVALASFTV
                     DGLHSADLAHLLTEQGIAVRSGHHCAMPLLKRLGVAGAIRVSLGLYTDGEDLERFFGA
                     LDKALELLR"
     gene            1968..>2253
                     /locus_tag="VLF16_06215"
     CDS             1968..>2253
                     /locus_tag="VLF16_06215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012702426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufE family protein"
                     /protein_id="HSX70508.1"
                     /translation="MSLPAPAREALEAFAAGPGWEQRARLLLQWGERLEPLNEDERTE
                     ANRVDGCDSLVWLVAEQRDGAWHFRAASEARVIRGLLAVLLARVDGLDARA"
BASE COUNT          321 a          852 c          746 g          334 t
ORIGIN      
        1 gcgtgcgcct gggcgcctac atcggcgaag gcaccaccgt gatgcacgag ggcttcgtca
       61 acttcaacgc cggcaccgaa ggcccgggca tgatcgaagg ccgcgtctcc gccggcgtgt
      121 tcgtcggcaa gggctcggac ctgggcggcg gctgctcgac catgggcacc ctgtccggcg
      181 gcggcaacat cgtcatttcc gtgggtgaag gctgcctgat cggcgccaat gccggcatcg
      241 gcatcccgct gggcgaccgc aacatcgtcg aagccggcct gtacgtcacc gccggcacca
      301 agatcgccgt gctggacgac cagaacaacc tggtcaaggt ggtcaagggc cgcgacctgg
      361 ccggccaggc cgacctgctg ttccgccgca actcgcagac cggcgcggtg gagtgcaaga
      421 ccaacaagtc ggccatcgag ctcaacgagg cgctgcacgc ccacaactga aaatcggcct
      481 aaagctactg cgctaggcca tgcggcgttg aaatcaggct ggatcgccag cccggtcggg
      541 ctgctcgttt acacaccgta aactccgcgc cctcgcctga ttgattcgct ggcgctcacc
      601 cttcgggcca gccattggct gttactcccg ctggtcgttg cgccttgcct ggccgtcgct
      661 cgcgacgctt gagctccgat ttttggccgc gtgatggcga acaggccggg cccatgcccg
      721 gcctgtctat ttatactcag cacctcctct tccagtgccg atgccatgtc cctgatttcc
      781 ccctggcgtg acgacttccc cggagtgtcg gccctcgccg ccgaaggcca gacctacctg
      841 gacagcgccg ccaccgcgca gaagccccag gcgatgctgg acagcctgct cggctactac
      901 gccagtggcg cggccaacgt gcaccgcgcc cagcacctgc cgggcgagcg cgccacccgc
      961 gccttcgagg cgacccgcga gaaggccgcg cgctggctca acgccgccag caccgaggaa
     1021 atcgtcttca cccgcggcac caccgagtcg ctgaacctgc tggcctacgg cctggagcac
     1081 ctgctccagc ccggcgagca gatcgccgtc agcgccctgg agcaccacgc caacctgctg
     1141 ccctggcagc agctggccga gcgccgaggc ctggaactgc tggtgctgcc gctggatgcc
     1201 gacggtcaga tcgatctcga ccaggccgcc gcgctgatcg gcccgcgcac ccgcctgctg
     1261 gccgtgtcgc agctgtccaa cgtgctcggc cgctggcaac cgctgcccga gctgatcgcc
     1321 ctggcccgcg cgcacggcgc gctgagcgtg gtcgacggcg cccagggcgt ggtccacggc
     1381 cgccacgacg tgcgggcgct gggctgcgac ttctacgtct gctccagtca caagctctac
     1441 ggcccggacg gcgtcggcct gctccacggc cggcaggaag ccctggcaca actgcgccac
     1501 tggcagcacg gcggcgagat ggtgctgcac gccgactacc acgccgcccg cttccgcccg
     1561 gcgccgctcg gtttcgaggc cggcaccccg ccgatcgccg ggatcatcgc cttcggcgcc
     1621 acgctggact acctcgccgg cctcgatgcc gccgccgtgg tcggccacga ggcggcgctg
     1681 catgccaagc tgctcgccgg cctggcggtg cgcgacggcg tgcgcctgct cggcgagccg
     1741 caggtggcgc tggccagctt caccgtcgac ggcctgcaca gcgccgatct ggcccatctg
     1801 ctcaccgaac agggcatcgc cgtgcgcagt ggccatcact gcgccatgcc gctgctcaag
     1861 cgcctcggcg tggccggcgc tattcgcgtc tcgctcggcc tgtacaccga cggcgaggat
     1921 ctggagcgtt tcttcggcgc cctcgacaag gccctggagc tgctgcgatg agcctgcccg
     1981 ccccggcccg ggaagccctc gaagccttcg ccgccggccc cggctgggaa cagcgcgcgc
     2041 gtctgctgct gcagtggggc gagcgcctgg agccgctgaa cgaggacgag cgcaccgagg
     2101 ccaaccgcgt cgacggctgc gacagcctgg tctggctggt ggccgagcag cgcgacggcg
     2161 cctggcattt ccgcgccgcc agcgaggcgc gggtgatccg cggcctgctg gccgtgctgc
     2221 tcgcgcgggt cgacggcctc gacgcccggg cgc
//
LOCUS       DATIHC010000389         2326 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21467, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000389 DATIHC010000000
VERSION     DATIHC010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2326
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21467"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..860
                     /locus_tag="VLF16_06220"
     CDS             <1..860
                     /locus_tag="VLF16_06220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HSX70509.1"
                     /translation="THLRTSQGSTVVIPNSVAAKTKVFNLNRSTDIDNVRLSISVPVQ
                     VRPRLVLDALNRTLRGVSALLQTPKPKVSVKSSDLSMVEYEMSAYVAAGSSASEVRNL
                     LFDLAHRHLHAAGILRGAELPDAPRSRQRVLLDDVKIFRTLDAEDKDRLAELLVAQTF
                     SKGQVVLEVGEVSEQLLLIGTGVISAAVPNGNDMIEAGRMGPGEIMGEQGVTFGTPSE
                     ARFTALSSGVLYSLDKASLEACLEQRSEVGSALAKLQNFRQQASASLLEQKPVTIKKG
                     KFLSWLQRS"
     gene            complement(996..1232)
                     /locus_tag="VLF16_06225"
     CDS             complement(996..1232)
                     /locus_tag="VLF16_06225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70510.1"
                     /translation="MRTLYVLTRHDAHDYRAVAEIYYYDEDGEMQIDRKATGICGDIG
                     ARDGGRVDAWIQIKSQIAERLKSAGIAFNDIQFD"
     gene            complement(1267..2244)
                     /locus_tag="VLF16_06230"
     CDS             complement(1267..2244)
                     /locus_tag="VLF16_06230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019342569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A deacylase LpxR family protein"
                     /protein_id="HSX70511.1"
                     /translation="MKLGLSGVVAALTLLVPSAVLANIFALKVENDAFPGGYDDHYTN
                     GVEGSWGFEPLPDHWTRRVAEVVPGWVADDVTHAAYRAGHQMFTPEDITISALQVDDR
                     PYAALMYGGISLLSADQLPTHRETSILTLDVGLVGQGAGGEKIQRGVHELTNSDIPEG
                     WDHQLENEPFVNIGLEKRWWIQDQLGGLEMDFGPNAGGALGNLYTYLSSGAGIRVGQG
                     LSRAVSHVPGASGLSGPSFFEAGSGFDWYAYANLEGRYVAHNMLLDGNTFKDSHSVDR
                     KAVVGDAQIGLVLMWDRWQLTFSNVWRSREFHGQDKPDQFGSISLATSL"
BASE COUNT          479 a          718 c          682 g          447 t
ORIGIN      
        1 ccacccacct gcgcaccagc cagggcagca ccgtcgtgat tcccaactcg gtggccgcca
       61 agaccaaggt ctttaatctc aatcgctcca ccgacatcga caacgtcagg ctgagcatca
      121 gcgtgccggt acaggtgcgc ccccgcctgg tgctcgacgc cctcaaccgc accctgcgag
      181 gtgtcagcgc cctgctgcag acgcccaagc cgaaggtgtc ggtcaagagc tccgacctga
      241 gcatggtgga gtacgaaatg agcgcatacg tcgccgcggg cagcagcgcg agcgaggtgc
      301 gcaacctgct tttcgacctc gcccaccggc acctgcacgc cgccggaatc ctgcgcggcg
      361 ccgagcttcc cgacgcaccg cgcagtcgcc agcgcgtcct gctcgatgac gtgaaaatct
      421 tccgtacgct ggatgccgag gacaaggatc gactcgccga actgctggtg gcgcagacct
      481 tcagcaaggg gcaggtggtg ctggaagtcg gcgaagtcag cgagcagttg ctgctgatcg
      541 gtaccggagt gatatcggcc gccgtaccca acggcaacga catgatcgag gccgggcgca
      601 tgggccccgg cgagatcatg ggtgaacagg gcgtcacctt cggcacgccg tccgaagcac
      661 gcttcaccgc gctcagctcg ggagtgctgt acagcctcga caaggcatcg ctagaggcct
      721 gcctggagca acgcagcgaa gtcggcagcg cgctggccaa actgcaaaac ttccgtcagc
      781 aggccagcgc ctcgctgctg gaacagaagc ccgtgacgat taagaagggc aagttcctca
      841 gctggctgca acgctcctga aggccgggcc ggtcacacgg gattggccgg tggtgtgctc
      901 ggttgctctc ggggggagcg actggcgcta gccatgatct cgggtgagtt ctgctatcgg
      961 ccagaagcgg acgtccagtt atctggcggg cccccttaat caaattgaat gtcgttgaaa
     1021 gcgatgccgg cactcttcaa tcgttctgca atctgacttt tgatttgaat ccaagcgtct
     1081 acgcggccgc catctcgggc gccaatgtca ccgcagatcc cggtggcctt ccggtcgatc
     1141 tgcatctcgc cgtcttcgtc gtagtagtaa atttcagcta ctgctcggta gtcatgagcg
     1201 tcatgtcgcg tgagcacata gagtgttctc attgttatcc cctcaaagtg cgagatggcc
     1261 gtgggcctat agagaggtag cgagcgagat cgagccaaac tgatctggct tgtcttgccc
     1321 gtgaaactcc ctgctacgcc agacgttcga gaacgtcagc tgccagcgat cccacataag
     1381 caccagtccg atttgcgcat cgcctacgac cgccttgcgg tcgacagagt ggctgtcctt
     1441 gaaggtgttg ccgtccagca gcatgttgtg agccacatat cggccttcga gattggcgta
     1501 ggcgtaccaa tcgaatccgc tgcctgcctc gaagaaggaa gggcctgaga gccccgacgc
     1561 gcctgggacg tggctgacgg cccgtgataa tccctggccg acgcgtatac cggctccgct
     1621 agagagatag gtatacaaat tccccagcgc acctcctgcg ttagggccaa agtccatctc
     1681 cagaccgccc agctgatctt gaatccacca gcgcttttca aggccaatgt ttacgaaagg
     1741 ttcattctcc agctgatgat cccagccctc tggaatatcg ctgttggtca gctcgtggac
     1801 gccacgctgg atcttttcgc ctcctgctcc ttgtccaacg aggccaacat ccagagtcag
     1861 gatgctcgtt tctcgatggg tgggaagctg gtctgcggaa agcaggctta tgcctccgta
     1921 catcagagcc gcataggggc gatcatcgac ttgaagcgcg gaaatggtga tgtcttcggg
     1981 ggtgaacatc tgatgtccag ctcgataggc tgcgtgcgtc acatcatcgg caacccagcc
     2041 aggcacaact tccgccaccc ggcgagtcca gtgatctggc agaggctcga acccccagga
     2101 tccctcgacg ccattggtgt agtgatcgtc ataacctcct gggaaagcat cattctcaac
     2161 cttcaatgcg aagatgttgg cgagaacggc gctggggacc aagagcgtta aggcggcgac
     2221 gacgccgcta agacctagtt tcattcgaag ctccggccca tcgagcgatc tataggcaaa
     2281 gaaacaccac tgctggcacg gacgccgcgc aaccatggat cagtcg
//
LOCUS       DATIHC010000390         2390 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10417, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000390 DATIHC010000000
VERSION     DATIHC010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2390)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2390)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2390
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10417"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..226
                     /locus_tag="VLF16_06235"
     CDS             <1..226
                     /locus_tag="VLF16_06235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Mpo1-like protein"
                     /protein_id="HSX70512.1"
                     /translation="HYVGSLLVLSILAYAIVTQQWLWLLALPLAGYGFAWVGHFVFEK
                     NKPATFKYPLYSFMGDWVMLKDAFTGRIRF"
     gene            434..1822
                     /locus_tag="VLF16_06240"
     CDS             434..1822
                     /locus_tag="VLF16_06240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HSX70513.1"
                     /translation="MKLTVQETPRAQPAPLLREYYSRVLAYIAPAAAVAAGTYSQHFG
                     YEILWLVPYALLYPHLAYHLGNRFKRDYPQQTNLILLFLDAVHAGAAAVLMGFSVVPT
                     LMFLLTLAFSSLVAGGLRNMGVALLVATGSIALNTALIRPEIDVATPSLVALVSMLLT
                     TLYICITAFFVHEQGMRLTQARVEIKREQEKAARLARNLAKYLSPQVWEMIFSGKKHV
                     RLETQRKKLTVFFSDIKGFTELSEELEAEQLTDLLNTYLNEMSKIALKYGGTIDKFVG
                     DSVLVFFGDPSSQGAKKDALNAVSMAIAMRKHMKVLRQQWRSQGITKPLEIRMGLNTG
                     YCTVGNFGADTRMDYTIIGREVNLASRLESSSEAGEILISHETYSLVKDLIMCRDKGQ
                     IAVKGFSRPVQIYHVVDHRRDLGARSSYVEHELPGFSMYLDTNGIQNYDKEKVIQALN
                     LAAEKLRDKVIV"
     gene            complement(1812..>2390)
                     /locus_tag="VLF16_06245"
     CDS             complement(1812..>2390)
                     /locus_tag="VLF16_06245"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HSX70514.1"
                     /translation="ARDRAREVGSAARFVCADAQSHDFAPASFDRLISRFGVMFFADP
                     TAAFANLRGAARQGARLRLIAWRSAAENPFMTTAERAAAGSLPDLPVRRPGAPGQFAF
                     ADAQRVRGLLQTAGWSEVEIRRLDVPLSMAEAALLPYLSRLGPVGLALQQLEEGARTA
                     LAARLREAFEPFVRGDRVEFVAACWQIDAVRR"
BASE COUNT          421 a          864 c          725 g          380 t
ORIGIN      
        1 gcactacgtc ggcagcctgc tggtgctgag catcctcgcc tacgccatcg tcacccagca
       61 gtggctgtgg ctgctggccc tgcccctggc cggatacggc ttcgcctggg tcggccattt
      121 cgtcttcgag aagaacaagc cggccacttt caaatacccg ctgtacagct tcatgggcga
      181 ctgggtgatg ctcaaggacg ccttcaccgg ccgcatccgc ttctgatctc gggataaaaa
      241 acctcgcggg cgacgcccgc ccagctcgag gcccgaaccg caagacctgc cggtcagttc
      301 aggagcgccg ctcggcgctc cgggctggct gtgtgacctg cgtcccgcta tgatcccgcc
      361 tggctcggct cttgcagagc ccgtagacgc ccgccagagg cgtcagaaat ccagcaggga
      421 tcgtccacac ttgatgaaac tcaccgtcca ggaaacaccc agggcgcagc ctgccccgtt
      481 gcttcgcgaa tactattcgc gcgtgctggc ctacatcgcg ccggccgcgg cggtcgccgc
      541 cggcacctac agccagcact tcggctacga gattctctgg ctggtgccct acgccctgct
      601 ctatccgcat ctggcctatc acctgggcaa ccgcttcaag cgcgattacc cgcagcagac
      661 caacctgatc ctgctcttcc tggacgccgt ccacgccggc gcggccgccg tgctgatggg
      721 cttctccgtc gtgccgacgc tgatgttcct gctgaccctc gccttcagtt cgctggtcgc
      781 cggcggcctg cgcaacatgg gcgtggcgct gctggtggcg accggcagca tcgccctgaa
      841 taccgcgctg atccgcccgg aaatcgacgt cgccacgccc agcctggtag cgctggtcag
      901 catgctgctg accacgctgt acatctgcat caccgccttc ttcgtccacg aacagggcat
      961 gcgcctgacc caggcgcgag tcgagatcaa gcgtgagcag gaaaaggccg cgcggctggc
     1021 gcgcaacctg gccaagtacc tgtcgccgca ggtctgggaa atgatcttca gcggcaagaa
     1081 gcacgtgcgc ctggagaccc agcgcaagaa gctcaccgtg ttcttctccg acatcaaggg
     1141 cttcaccgag ctctccgagg agctggaagc cgagcagctc accgacctgc tcaacaccta
     1201 cctcaacgag atgtcgaaga tcgccctcaa gtacggcggc accatcgaca agttcgtcgg
     1261 cgacagcgtg ctggtgttct tcggcgaccc ttccagccag ggcgccaaga aggacgcgct
     1321 gaacgccgtg tccatggcca tcgccatgcg caagcatatg aaggtgctgc gccagcagtg
     1381 gcgctcccag ggcatcacca agccgctgga gatccgcatg ggcctcaaca ccggctactg
     1441 caccgtgggc aacttcggcg ccgacacgcg catggattac accatcatcg gccgcgaagt
     1501 gaacctggcc agccgcctgg aaagctcctc cgaggccggc gagatcctca tctcccacga
     1561 gacctactcg ctggtgaagg acctgatcat gtgccgcgac aagggccaga tcgcggtcaa
     1621 gggcttcagc cgtccggtgc agatctacca tgtggtggac catcgccgcg atctgggcgc
     1681 ccgttccagc tatgtcgagc acgagttgcc gggcttctcc atgtatctgg ataccaacgg
     1741 catccagaac tacgacaagg agaaggtcat ccaggcgctc aacctggccg ccgagaagct
     1801 gcgcgacaag gtcatcgtct gaccgcgtcg atctgccagc aggccgccac gaactccacc
     1861 cgatcgcctc tcacgaacgg ctcgaaggcc tcccgcaacc gcgccgccag cgcggttcgc
     1921 gcgccctcct ccagttgctg cagcgccagc ccgaccggcc ccaggcggct cagatagggc
     1981 agcagcgccg cttccgccat gctcagcggc acatccagcc tgcggatttc cacctcgctc
     2041 caaccggccg tctgcagcag cccgcgcacc cgctgcgcgt cggcgaaggc gaactgcccc
     2101 ggcgcgcccg gccggcgcac cggcaggtcc ggcagcgatc cggcggccgc ccgctcggcg
     2161 gtggtcatga agggattctc ggcggcgctg cgccaggcaa tcaggcgcag gcgcgcgcct
     2221 tgccgcgcgg cgccacggag gttggcgaac gccgcagtcg ggtcggcgaa gaacatcacg
     2281 ccgaagcgcg agatcagccg gtcgaaagac gccggcgcga agtcgtggct ctgagcgtcg
     2341 gcgcagacga agcgggccgc gctgcccacc tcccgcgccc ggtcccgggc
//
LOCUS       DATIHC010000391         3008 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8069, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000391 DATIHC010000000
VERSION     DATIHC010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3008
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8069"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            112..1026
                     /gene="hemF"
                     /locus_tag="VLF16_06250"
     CDS             112..1026
                     /gene="hemF"
                     /locus_tag="VLF16_06250"
                     /EC_number="1.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016489969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004109 - coproporphyrinogen oxidase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-dependent coproporphyrinogen oxidase"
                     /protein_id="HSX70515.1"
                     /translation="MSERTQAVKAYLLDLQDRICTALEAEDGGTRFFEDSWERPAGGG
                     GRTRVIENGALIEKGGVNFSHVFGDSLPPSASAHRPELAGRGFEAMGVSLVIHPENPH
                     VPTSHANVRFFSAEKEGEESVWWFGGGFDLTPYYAHEEDCVHWHQVARDACAPFGAEV
                     YPKFKEWCDRYFHLKHRGEPRGIGGLFFDDLNQWDFDTSFAFLRAIGDAYIQAYLPIV
                     QRRKATPFTEQQREFQAFRRGRYVEFNLVFDRGTLFGLQSGGRTESILMSLPPHVRWG
                     YDWKPEPGSEEARLTEYFLQDRDWLAGV"
     gene            1172..1990
                     /gene="aroE"
                     /locus_tag="VLF16_06255"
     CDS             1172..1990
                     /gene="aroE"
                     /locus_tag="VLF16_06255"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003177170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_process: GO:0019632 - shikimate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HSX70516.1"
                     /translation="MDRYGVFGNPIGHSKSPLIHRLFAEQTGQDLTYEALLAPLEDFP
                     GYARAFFATGRGGNVTVPFKEEAYRLADELSERARRAGAVNTLKKLDDGRLLGDNTDG
                     AGLVRDLTVNAGLELADKRILLLGAGGAVRGVLEPLLAEGPQSLTIANRTVEKAEQLA
                     REFADLGPVAAAGFDWLSEPVDLIVNGTSASLAGELPPLDPSLIRPGHTVCYDMMYGK
                     EPTAFNRWAAGHGAARCLDGLGMLVEQAAEAFFVWRGVRPDGAPVLAELRRQLG"
     gene            1992..2858
                     /locus_tag="VLF16_06260"
     CDS             1992..2858
                     /locus_tag="VLF16_06260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010793279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HSX70517.1"
                     /translation="MPYLLGVTALWAFSFSLIGEYLAGRVDSDFAVLARVLIAALVFL
                     PFTVWRGLPRRMLAGFWLAGALQFGITYLCLYRSFQVLTVPEVLLFTVLTPIYVTLLD
                     DALARRFSPWALLAALVAVGGGVIIRFDKLEGDYLLGFVLLQVANATFAADQVLCRRL
                     LLQYRPAQPLHRFFGHFFLGAMVLVLPSFLLFGNPDKLPHTAVQWGVLVWMGLFATAL
                     GLYWWVKGSTRVDAGTLAIMNELHVPAGLLVNLLIWNRDFDLPRLAAGGAVILAAMAL
                     LHLGRRRASALA"
BASE COUNT          431 a         1079 c          977 g          521 t
ORIGIN      
        1 cactcctctg caaagggctc catccaagcg ccggggctga cccccgtcaa gtgcggcgga
       61 atgcgacgat ggtatgctgg cgccctcttc cgaactgccc ggacccttgc cgtgagtgaa
      121 cgtacccagg ccgttaaggc ctacctgctc gacctgcagg accgtatctg caccgccctc
      181 gaagccgagg atggcggtac ccgcttcttc gaggacagct gggagcgtcc cgccggcggc
      241 ggtggtcgta cccgggtgat cgagaacggc gcgctgatcg aaaagggcgg cgtgaacttc
      301 tcccacgtgt tcggcgacag cctgccgcct tcggccagcg cgcaccgtcc cgagttggcc
      361 gggcgcggct tcgaggccat gggcgtgtcc ctggtgatcc acccggaaaa cccgcacgtg
      421 ccgacctccc acgccaacgt gcgcttcttc agcgccgaga aggagggcga agagtcggtc
      481 tggtggttcg gcggcggctt cgacctgacg ccctattacg ctcatgaaga agactgcgtg
      541 cactggcacc aggtggcccg cgacgcctgc gcgccgttcg gtgccgaggt ctatccaaag
      601 ttcaaggagt ggtgcgaccg ctacttccat ctcaagcacc gcggcgagcc gcgcggcatc
      661 ggcgggctgt tcttcgacga tctcaaccag tgggacttcg acaccagctt cgccttcctg
      721 cgtgccatcg gcgatgccta tatccaggcc tacctgccga tcgtccaacg gcgcaaggcc
      781 acgcctttca ccgagcagca gcgcgagttc caggccttcc gccgtggccg ctacgtcgag
      841 ttcaacctgg tgttcgaccg cggcaccctg ttcggcctgc agtccggcgg gcgcaccgaa
      901 tccatcctca tgtcgctgcc gccgcacgtg cgctggggct atgactggaa gccggagccg
      961 ggcagcgaag aggcgcgcct gaccgagtat ttcctgcagg accgcgactg gctcgccggc
     1021 gtttagggcg gccctctccc ccgcctccat aaaagggcga gtcgtagggt ggaaaacgcc
     1081 gtaggctttt ccacctccca catcagtggg tggaaaatcg ctgcgcgagt tttccaccct
     1141 acgcagacag gcaaacttcg aaggattttc catggaccgc tacggcgtct tcggcaaccc
     1201 catcggccac agcaagtcgc cgctgatcca ccgcctgttc gccgagcaga ccggccagga
     1261 tctaacctac gaggccctgc tggcgccgct tgaagacttc cccggctatg cccgcgcctt
     1321 cttcgcaacc ggtcggggcg gcaatgtcac cgtgccgttc aaggaagagg cctatcgcct
     1381 ggccgacgag ctgagtgagc gcgctcgccg cgccggcgcg gtgaatactt tgaagaagct
     1441 cgatgacggc cgcctgctcg gcgacaacac cgacggcgcc ggcctggtcc gcgacctgac
     1501 ggtgaacgcc ggcctcgaac tggccgacaa gcgcatcctc ctgctcggcg ccggcggcgc
     1561 cgtgcgcggc gtgctggagc cgctgctcgc cgaagggccg cagagcctga ccatcgccaa
     1621 ccgcacggtg gagaaggccg agcagctggc gcgcgaattc gccgacctgg gcccggtggc
     1681 cgcggccggc ttcgactggc tcagcgagcc ggtcgatctg atcgtcaacg gcacctcggc
     1741 ctcgctggcc ggtgagctgc cgccgctcga cccgagcctg atccgccccg gccacacggt
     1801 ctgctacgac atgatgtacg gcaaggagcc gaccgccttc aaccgctggg ccgccgggca
     1861 cggcgcggcg cgctgcctgg atggcctggg catgctggtg gaacaggccg ccgaggcgtt
     1921 cttcgtctgg cgcggcgtgc ggccggacgg cgcgccggtg ctggccgagc tgcgccgaca
     1981 gctgggctga catgccgtac ctgctgggcg tcacggccct ctgggccttc tccttcagcc
     2041 tgatcggcga gtacctggcc ggccgcgtcg acagcgattt cgccgtgctg gcgcgagtgc
     2101 tgatcgccgc cctggtgttc ctgcccttca ccgtctggcg cggcctgccg cggcggatgc
     2161 tggccggctt ctggctggcc ggcgcgctgc agttcggcat cacctacctg tgcctgtacc
     2221 gcagcttcca ggtgctgacg gtgccggaag tgctgctgtt caccgtgctc acgccgatct
     2281 acgtgaccct gctcgacgac gccctggccc gccgcttcag cccctgggcg ctgctcgccg
     2341 cgctggtcgc cgtcggcggc ggggtgatca tccgtttcga caagctggag ggcgactacc
     2401 tgctcggctt cgtcctgctg caggtggcca acgccacctt cgccgccgac caggtgctgt
     2461 gccgacgcct gctcctgcag taccggccgg cgcagccgct gcaccgcttc ttcggccatt
     2521 tcttcctcgg cgcgatggtg ctggtgctgc cctccttcct gctgttcggc aatccggaca
     2581 agctgccgca caccgccgtg caatggggcg tgctggtgtg gatggggctg ttcgccacgg
     2641 cgctgggcct gtactggtgg gtcaagggca gcacgcgggt ggacgccggc accctggcta
     2701 tcatgaacga gctgcacgtg ccggccggcc tgctggtcaa cctgctgatc tggaaccgcg
     2761 acttcgacct gccgcgcctg gccgccggcg gcgcggtcat cctcgccgcc atggccttgc
     2821 tgcacctggg ccgccgtaga gcgtccgcgc tcgcctgagc ggcgcaccgc acatatactc
     2881 tccgccattc gctggcaggg accgccaggc ttacatcaac cgcgcggacc cccgacagtg
     2941 aaaaaagccc tctccttcgc cggcctgttg ctggcctgtc tgaccttcat cgcccccgtc
     3001 gcccaggc
//
LOCUS       DATIHC010000392         2679 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33819, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000392 DATIHC010000000
VERSION     DATIHC010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33819"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..208
                     /locus_tag="VLF16_06265"
     CDS             <1..208
                     /locus_tag="VLF16_06265"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018926668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008990 - rRNA
                     (guanine-N2-)-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSX70518.1"
                     /translation="KEMRLFRPLVGDDADAPALLEAALALASHRVVVKRPRKAPIVEG
                     AKPSYALEGKSSRYDIYPKKALKP"
     gene            complement(205..843)
                     /locus_tag="VLF16_06270"
     CDS             complement(205..843)
                     /locus_tag="VLF16_06270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HSX70519.1"
                     /translation="MSDKSLQPSGGPGRPKDPAKRLAILEAAKRLFIQNGYDGSSMDA
                     IAAEAGVSKLTVYSHFTDKETLFACAVESKCAEQLPPLFFELGPEDSIEQTLLAIGRG
                     FNALINSEESLAMHRLMVAQGAQNPQLSQLFFNVGPQRVIDAMQRLLEQANAREQLQI
                     DNPQHAAEHFFCLVKGGCHFRLLMGVTQPLGAQEAEEHVQEVVRLFVRAYRP"
     gene            939..2042
                     /locus_tag="VLF16_06275"
     CDS             939..2042
                     /locus_tag="VLF16_06275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSX70520.1"
                     /translation="MLRHALSLAVPLSLISLLVACGNDETVEAPIRPAMVVHPLPAAD
                     AVTTYPGEVRARYEPELAFRIGGKIAKGLVDAGDRVSKDQPLAELDPQDVKLQLEAAR
                     AQLNAAEANLKLVRSERDRYKTLLARQLISQSQYDTVENQYRAGEARVKQIRAEFNVA
                     SNQAGYSVLRASQDGVVARRLAEVGQVVAAGQTVFTLAADGEREVLISVPEHALDRLR
                     IGQDVGIELWSQPGKRYAGRIRELSPAADVQSRTFAARVTFSDPKVKAEVGQSARVAI
                     TADGEVPLSVPLSALSAEKDQPYVWVVDPEESKVVRTPVRVGAYGQERVSVLEGLKES
                     DWVVAAGVHVLLDGQKVQPVGRDNRVVALAGKE"
     gene            2046..>2679
                     /locus_tag="VLF16_06280"
     CDS             2046..>2679
                     /locus_tag="VLF16_06280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSX70521.1"
                     /translation="MSFNLSEWALRNRSVVRYFMLVLAVIGALSYTKLGQSEDPPFTF
                     KAMVVRVDWPGATAEEVSRQITERIEKKVMETGEYMYVMSYSRPGESVVTFMARDSMH
                     SKDIPELWYQLRKKVGDIRHTLPPGIRGPFFNDEFGTTFGNIYALTGEGFDYAVMKDY
                     ADRLQLQLQRVKDVGKVELIGLQDEKIWIELSNVKLATLGLPLAAVQQALD"
BASE COUNT          456 a          857 c          918 g          448 t
ORIGIN      
        1 gaaggagatg cgcctgttcc gcccgctggt gggcgacgat gcggacgccc cggcgctact
       61 cgaggcggcg ttggcgttgg ccagccaccg ggtggtggtc aagcgcccgc gcaaggcgcc
      121 aatcgtcgag ggtgccaagc cgagctacgc gctggaaggc aagtccagcc gctacgacat
      181 ctacccgaag aaggccttga agccctaggg gcgataggcg cgcacgaaca accgcaccac
      241 ttcctgcacg tgttcctcgg cctcctgcgc gccgagcggc tgggtcacgc ccatcaacag
      301 gcggaaatgg cagccgccct tgaccaggca gaagaaatgc tcggcggcat gctgggggtt
      361 gtcgatctgc aactgttcgc gggcattggc ctgctccagc agacgctgca tggcgtcgat
      421 cacgcgctgc gggccgacat tgaagaacag ttgcgacagc tgcggattct gcgcgccctg
      481 ggcgaccatc aggcggtgca tggccaggga ctcctcgctg ttgatcagcg cattgaagcc
      541 gcgaccgatg gccagcaggg tctgctcgat gctgtcctcc gggcccagct cgaagaacag
      601 cggcggcagc tgctccgcgc acttggactc caccgcgcag gcgaacagcg tctccttgtc
      661 ggtgaagtgg ctgtacaccg tgagcttcga cacgccggct tccgcggcga tggcatccat
      721 gctgctgccg tcgtagccgt tctggatgaa caggcgcttg gccgcctcga gaatggcgag
      781 gcgtttggcc gggtccttgg gccgtccggg gccgccgctg ggctgtaaag atttgtcgga
      841 cattttcggc tttttaatac tggactggtg agttcgctat ttttactata ccgggcagta
      901 taagtattcc aagctccttt tgcgcaaggt cgtccatcat gctccgtcat gctctgtccc
      961 tcgctgtgcc gctgtcgctg atctccctcc tggttgcctg tggcaacgat gaaaccgtcg
     1021 aggcgccgat acggccggcg atggtggtgc atccgctgcc ggcggcggac gccgtgacca
     1081 cctaccccgg cgaagtgagg gcgcgctacg agccggagct ggccttccgc atcggcggca
     1141 agatcgccaa gggcctggtg gacgccggcg accgggtcag caaggaccag ccgctggccg
     1201 agctggaccc gcaggacgtc aagctgcagc tggaggccgc ccgcgcccag ctcaatgccg
     1261 ccgaagccaa cctcaagctg gtgcgctccg agcgcgatcg ctacaagaca ctgctggccc
     1321 gccagctgat cagccagtcg cagtacgaca cggtcgagaa ccagtaccgc gccggcgagg
     1381 cacgggtgaa gcagattcgc gccgaattca acgtggccag caaccaggcc ggctactcgg
     1441 tgctgcgcgc ctcgcaggac ggcgtggtgg cgcggcgcct ggccgaggtg gggcaggtgg
     1501 tcgccgctgg ccagacggtg ttcaccctgg ccgccgacgg tgaacgcgag gtgctgatca
     1561 gcgtgccgga gcatgccctg gatcgcctgc gcatcggcca ggacgtcggc atcgagctgt
     1621 ggtcgcagcc gggcaagcgc tacgccggtc gcatccgcga gctgtcgccg gctgccgatg
     1681 tgcaatcgcg caccttcgcc gcacgggtca ccttcagtga tcccaaggtc aaggccgagg
     1741 tggggcaaag cgcccgggtg gcgatcaccg ccgatggcga ggtgccgctc tcggtgccgc
     1801 tgtcggccct cagcgcggag aaggaccagc cctatgtctg ggtggtcgat ccggaggaat
     1861 ccaaggtggt gcgcacgccc gtgcgggtgg gcgcctacgg ccaggagcgc gtgtcggtcc
     1921 tggaaggctt gaaggagagc gactgggtgg tcgccgccgg ggtgcacgtg ctgctcgatg
     1981 ggcagaaggt gcagccggtg gggcgcgaca accgcgtggt tgcactggcc ggcaaggagt
     2041 aagccatgtc cttcaacctg tccgaatggg cgctgcgcaa ccgcagcgtg gtgcgctact
     2101 tcatgctggt ccttgcggtc atcggcgcgc tgtcctacac caagctgggc cagagcgagg
     2161 acccgccctt caccttcaag gccatggtcg tgcgcgtcga ctggccgggc gccaccgccg
     2221 aggaagtttc ccggcagatc accgagcgca tcgagaagaa ggtgatggag accggcgagt
     2281 acatgtacgt gatgtcctat tcgcgccccg gcgagtcggt agtcaccttc atggcgcgcg
     2341 actccatgca ttccaaggac atccccgagc tctggtacca gctgcgcaag aaggtcggcg
     2401 acatccgcca cacgctgccg ccgggcattc gcgggccatt cttcaacgat gaattcggca
     2461 ccaccttcgg caacatctac gcgctcaccg gcgagggctt cgactacgcg gtgatgaagg
     2521 actacgccga ccgcctgcag ctgcagctgc agcgggtcaa ggacgtgggc aaggtcgagc
     2581 tgatcggcct gcaggacgag aagatctgga tcgagctgtc caacgtcaag ctggccacac
     2641 tgggcttgcc gctggcggcc gtgcagcagg cactggacg
//
LOCUS       DATIHC010000393         2499 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_26255, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000393 DATIHC010000000
VERSION     DATIHC010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2499)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2499)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2499
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26255"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..105)
                     /locus_tag="VLF16_06285"
     CDS             complement(<1..105)
                     /locus_tag="VLF16_06285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70522.1"
                     /translation="MKLIVKPFAEITIKSRPVRKQFIRQLAKNIRTVLR"
     gene            424..1830
                     /gene="glnA"
                     /locus_tag="VLF16_06290"
     CDS             424..1830
                     /gene="glnA"
                     /locus_tag="VLF16_06290"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--ammonia ligase"
                     /protein_id="HSX70523.1"
                     /translation="MSKSLQLIKEHDVKWVDLRFTDTKGKQHHVTMPARDALDDEFFE
                     VGKMFDGSSIHGWKGIEASDMILLPVDDTAVLDPFTEEPTLILVCDIIEPSTMQGYDR
                     DPRSIAKRAEAYLKTTGIGDTVFVGPEPEFFIFDEVKFKSDISGSMFKIYSEQGSWMT
                     DADVESGNKGHRPAVKGGYFPVPPCDHDHEIRTAMCNAMEEMGLVVEVHHHEVATAGQ
                     NEIGVKFNTLVNKADEVQTLKYCVHNVADAYGKTATFMPKPLYGDNGSGMHVHLSIAK
                     DGKNTFAGEGYAGLSDTALYFIGGIIKHGKALNGFTNPSTNSYKRLVPGFEAPVMLAY
                     SARNRSASIRIPYVSSPKARRIEARFPDPAANPYLAFAALLMAGLDGIQNKIHPGDAA
                     DKNLYDLPPEEAKEIPQVCGSLKEALEELDKGRAFLTKGGVFSDDFIDAYIELKSEEE
                     IKVRTFVHPLEYDLYYSV"
     gene            1992..>2499
                     /locus_tag="VLF16_06295"
     CDS             1992..>2499
                     /locus_tag="VLF16_06295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4124 domain-containing protein"
                     /protein_id="HSX70524.1"
                     /translation="MRLLTACLLCTLALPAAAQIYKYTDPNGNTVFTNQPPEGQSAES
                     VELPPTNTVEAQEPVVTEQAPPANSDLPPYGTLQLTDLPDEAALRANNGTFTVGVQIE
                     PRLMPGHRFRLLLDGQPYGQASNVPRLQLTNVDRGEHSLAVEVLNGERQVQQSPTVVF
                     TVQRISLNS"
BASE COUNT          524 a          868 c          706 g          401 t
ORIGIN      
        1 acgcagcacc gtgcggatgt tcttcgccag ctggcggatg aactgcttgc gcaccggccg
       61 gctcttgatg gtgatttccg cgaagggttt gacgatgagt ttcatgggaa aacgagcgcc
      121 ggagtgcgtg ccgaaaaaca ggggcgcgga ttatagcgga aactgctcaa gctttgacca
      181 aaaaacaacg caagcaccaa aacagggcag ccaggcattt tccagcacta attcggtgca
      241 caaaaacgtc cgaaattcgc tcgcagcccc cggcacccct gagtttcagg ccctcagccc
      301 attccggggc actggcatgc aaattgctcc cttgtgaggc agccaggcct ggcggaccat
      361 ccgcccggtt ttgcaccgat tccggaggct ggcgaagccg gccccatcca cctggaggac
      421 accatgtcga agtcgcttca actgattaaa gaacacgacg tgaagtgggt tgacctgcgc
      481 ttcaccgaca ccaagggcaa acagcaccac gtgaccatgc cggcccgtga cgccctggac
      541 gacgaattct tcgaagtcgg caaaatgttt gacggctcct ccatccatgg ctggaaaggc
      601 atcgaagcct ccgacatgat cctgctgccg gtcgacgata ccgccgtgct ggacccgttc
      661 accgaagagc cgaccctgat cctggtctgc gacatcatcg agcccagcac catgcagggc
      721 tacgaccgcg acccgcgctc catcgccaag cgcgccgagg cctacctgaa gaccaccggt
      781 atcggtgaca ccgtcttcgt cggcccggag cccgagttct tcatcttcga cgaagtgaag
      841 ttcaagtccg acatctccgg ttccatgttc aagatctact ccgagcaggg ctcctggatg
      901 accgacgccg acgtcgagtc cggcaacaag ggccaccgcc cggccgtcaa gggcggttac
      961 ttcccggttc cgccgtgcga ccacgaccac gaaatccgta ctgccatgtg caacgccatg
     1021 gaagaaatgg gcctggtcgt cgaagttcac caccacgaag tggcgaccgc cggtcagaac
     1081 gaaatcggcg tgaagttcaa caccctggtc aacaaggctg acgaagttca gaccctgaag
     1141 tactgcgtgc acaacgtcgc cgacgcctac ggcaagaccg ctaccttcat gccgaagccg
     1201 ctgtacggcg acaacggctc gggcatgcac gtgcacctgt ccatcgccaa agatggcaag
     1261 aacaccttcg caggcgaagg ctatgccggc ctgtccgaca ccgccctgta cttcatcggc
     1321 ggcatcatca agcacggcaa ggccctgaac ggcttcacca acccgtcgac caactcctac
     1381 aagcgtctgg tcccgggctt cgaagccccg gtcatgctgg cctactcggc ccgcaaccgt
     1441 tccgcctcga tccgtatccc gtacgtttcc agcccgaaag cccgccgcat cgaagcgcgc
     1501 ttccccgacc cggctgccaa cccgtacctg gccttcgccg ctctgctgat ggccggtctg
     1561 gacggtatcc agaacaagat ccaccccggc gatgccgccg acaagaacct gtatgacctg
     1621 ccgccggaag aggccaagga aatcccgcag gtgtgcggca gcctgaaaga ggcgctggaa
     1681 gagctggaca agggccgcgc gttcctgacc aagggcggcg tgttctccga cgacttcatc
     1741 gatgcctaca tcgagctgaa gagcgaagaa gaaatcaagg tgcgcacctt cgtgcacccg
     1801 ctggaatacg acctgtacta cagcgtctga tccagtcctg agctttccgg ctcatctgag
     1861 aggcctcctt cgggaggcct ctttttttcc gccgcaattt tggtgcgcca cgccacgcgg
     1921 gccgcagcgc ggacttgcca ggtacgccgc gcggtgcaac ccttgccgca ggacccttca
     1981 ggagcttacc gatgcgcctg ctcaccgcct gcctgctctg caccctggcc ctgccggccg
     2041 ccgcgcagat ctacaagtac accgacccca acggcaatac cgtcttcacc aaccagccac
     2101 cggaaggcca gagcgccgaa tcggtcgagc tgccgccgac caacacggtg gaggcgcagg
     2161 agccggtggt gaccgagcaa gccccgccgg cgaacagcga cctgccgccc tacggcaccc
     2221 tgcagctgac cgacctgccc gacgaggcgg cgctgcgcgc caacaacggc accttcaccg
     2281 tcggcgtgca gatcgaacca cgcctgatgc ccgggcaccg cttccgcctg ctgctggacg
     2341 gccagcccta cggccaggcc agcaacgtcc cgcgcctgca gctgaccaac gtcgaccgcg
     2401 gcgaacacag cctggcggtg gaagtgctca acggcgaacg ccaggtgcag cagagcccga
     2461 ccgtggtgtt caccgtgcag cgcatcagcc tgaacagcc
//
LOCUS       DATIHC010000394         1615 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19745, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000394 DATIHC010000000
VERSION     DATIHC010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19745"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..470
                     /locus_tag="VLF16_06300"
     CDS             <1..470
                     /locus_tag="VLF16_06300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006801 - superoxide metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Fe-Mn family superoxide dismutase"
                     /protein_id="HSX70525.1"
                     /translation="AETLEYHHGKHHNAYVVNLNNLIPGTEFEGKSLEEIILSSSGGV
                     FNNAAQIWNHTFYWNCLSPNGGGQPTGALADAINATFGSGWGWLVKKADGSLALASTI
                     GAGNPMTSGDTPLLTCDVWEHAYYIDYRNLRPKYVEAFWNLVNWDFVAKNFAA"
     gene            675..>1615
                     /locus_tag="VLF16_06305"
     CDS             675..>1615
                     /locus_tag="VLF16_06305"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HSX70526.1"
                     /translation="MKLELKNSLSLKLLRVVLMSALVVGVVLSCGQIVFDIYKTRQAV
                     ASDAQRILGMFRDPSTQAVYSLDREMGMQVIEGLFQHEAVRYAAIGHPNEPMLAERSR
                     ELTPSSSRWITDPILGKEQTFTTQLVGKGPYSEYYGDLTITLDTASYGENFITTSVII
                     FVSGVLRALAMALVLYTVYHWLLTKPLSKIIEHLSHINPDRPSEHKLPMLRGNEKNEL
                     GLWINTANQLLASIERNTHLRREAENSLLRMSQYDFLTGLPNRQQLQQQLDQILDDAG
                     RLQRRVAVLCVGLDDFKGINEQFSYQTGDQLLLALSDR"
BASE COUNT          329 a          568 c          459 g          259 t
ORIGIN      
        1 ccgccgagac cctggaatac catcacggca agcaccacaa cgcctacgtc gttaacctga
       61 acaacctgat cccgggcacc gagttcgaag gcaagagcct ggaagagatc atcctgtcgt
      121 cctccggtgg cgtgttcaac aacgccgcgc agatctggaa ccacaccttc tactggaact
      181 gcctgtcgcc gaatggcggt ggccagccga ccggcgccct ggccgacgcc atcaacgcca
      241 ccttcggttc cggctggggc tggctggtga agaaggccga cggttccctg gccctggcca
      301 gcaccatcgg cgccggcaac ccgatgacca gcggcgacac cccgctgctg acctgcgacg
      361 tctgggaaca cgcctactac atcgactacc gcaacctgcg tccgaagtat gtcgaggcgt
      421 tctggaacct ggtcaactgg gacttcgtgg cgaagaactt cgccgcctga gtcgcccgac
      481 ccgcatgaaa aagcccggcc cagcgccggg ctttttcatg gccggatggg ccgaccggac
      541 cgacgggcta aaggaacccg agcgatgatc cgaaaaagat gggatatgga cgtaatggcc
      601 ctttgacggc tcacgtgcat ttgccaatac tcacatcggt cccgagcctc cggcggcgaa
      661 caaggaatac gcatttgaag ctggaactga aaaacagcct gtcgctgaaa ctgctgcgtg
      721 ttgtcctgat gtcggcgctt gtggtcggcg tggtgctgag ctgcgggcag atcgtcttcg
      781 acatctacaa gacccgccag gcagtggcca gcgacgccca gcgcatcctc ggcatgttcc
      841 gcgacccctc cacccaggcc gtctacagcc tcgaccgcga gatgggcatg caggtcatcg
      901 agggcttgtt ccagcacgaa gcggtgcgct acgccgccat cggtcatccc aacgaaccca
      961 tgctcgccga gcgctcccgc gagctgacgc cttcttccag ccgctggatc accgacccca
     1021 tcctcggcaa ggaacagacc ttcaccaccc aactggtcgg caaagggccg tacagcgagt
     1081 actacggtga cctgaccatc accctggaca ccgccagcta cggcgagaac ttcatcacca
     1141 cctcggtgat catcttcgtc tccggcgtgc tgcgcgcgct ggccatggcc ctggtgctgt
     1201 acacggtcta ccactggctg ctgaccaagc cgctgtcgaa gatcatcgag cacctcagcc
     1261 acatcaaccc ggaccgcccc agcgagcaca agctgccgat gctgcgcggc aacgagaaga
     1321 acgaactggg gctgtggatc aacacggcca accagctgct cgcctccatc gagcgcaaca
     1381 cccacctgcg ccgcgaggcg gagaacagcc tgttgcgcat gtcgcagtac gacttcctca
     1441 ccggcctgcc caaccgccag cagctgcagc agcagctcga ccagatcctc gacgacgccg
     1501 gccgcctgca gcgccgcgtg gccgtgctgt gcgtcggcct cgacgacttc aagggcatca
     1561 acgaacagtt cagctaccag accggcgacc agctgctgct ggccctgtcc gaccg
//
LOCUS       DATIHC010000395         2204 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12673, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000395 DATIHC010000000
VERSION     DATIHC010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12673"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(87..716)
                     /locus_tag="VLF16_06310"
     CDS             complement(87..716)
                     /locus_tag="VLF16_06310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017526162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HSX70527.1"
                     /translation="MYWAEFLTVALIHLLAVASPGPDFAIVVRESVAHGRRAGTWTAL
                     GVGTGIFVHVAYSLLGIGLIVSQSIVLFNALKWLAAAYLFYIGIKALRAKPAAPGSLE
                     VAGDGVERSPRGAFMTGFVTNGLNPKATLFFLSLFTVVINPHTPLAVQAGYGVYLAFA
                     TAIWFCLVALLFSQRRVRAGFARMGHWFDRLMGAVLVGLGIKLAFTGLR"
     gene            797..1765
                     /locus_tag="VLF16_06315"
     CDS             797..1765
                     /locus_tag="VLF16_06315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004885155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HSX70528.1"
                     /translation="MSNSPRAVFLDHASLDLGDLDLAPLRQVFGALVLHDASTAEQAA
                     ERLRGAQVAISNKVRLDAATLAACPELKLILVAATGTNNVDLAAAREHGITVANCRGY
                     GTASVAQHTLMLLLALATRLPDYQAAIRDGAWQRASQFCLLDFPIVELEGKTLGLLGH
                     GELGGAVARLAEALGMRVLLGALPGRPPRADRLPLAELLPQVDALTLHCPLTDQTRNL
                     IGAAELALMKPQALLINTARGGLVDEQALADALRAGRLGGAAFDVLSEEPPRNGNPLL
                     APDIPRLILTPHNAWGSRESRQRMIGQLAENAAAFFAGAPIRVVSG"
     gene            1796..>2204
                     /locus_tag="VLF16_06320"
     CDS             1796..>2204
                     /locus_tag="VLF16_06320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017701299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA methyltransferase"
                     /protein_id="HSX70529.1"
                     /translation="MDPRSEVLLRQAELFQGDLLLAGLPADDLLGQLPRAQGWSWHAG
                     EQNALEARFAGRSRFGTRAPDHAFDSAVLFLPKSRELTDYLLQTLAARLAGRELYLVG
                     EKRGGIERAAKQLAVYGKPRKLDSARHCQLWQVT"
BASE COUNT          362 a          837 c          710 g          295 t
ORIGIN      
        1 aagccactgc cgtggccatc gaattgctgt aaccggcgcg caaacgaaaa gccccgccta
       61 ggcggggctt tttcatgggc gactgtttat cgaagcccgg taaaagccag tttgatgccc
      121 agccccacca gcaccgcccc catcagccga tcgaaccagt ggcccattcg cgcgaagccg
      181 gcacgcaccc ggcgctgact gaacagcagc gctaccaggc agaaccagat cgccgtggcg
      241 aaggccaggt acaccccgta accggcctgc accgccagcg gcgtgtgcgg attgatcacc
      301 acggtgaaca gcgagaggaa gaacagcgtg gccttggggt tcaggccgtt ggtgacgaaa
      361 ccggtcatga aggcgccgcg cggcgagcgc tcgacgccgt caccggccac ctccaggctg
      421 cccggcgccg ccggcttggc acgcagagcc ttgatgccga tgtagaacag gtaggccgcc
      481 gccagccact tcagcgcatt gaacagcacg atcgactgcg acacgatcag gccgatcccc
      541 agcagcgaat aggccacgtg cacgaagatg ccggtgccca cgcccagcgc cgtccaggtg
      601 ccggcgcgtc gcccatgggc gacgctctcg cgcacgacga tggcgaagtc cggccccggg
      661 ctggccacgg ccagcaggtg gatcagcgcc acggtgagaa attccgccca gtacatgcga
      721 cctccggagg gtgggaatcg gggaaacagg ctggcaacct tacgcctgtc ctccgtattc
      781 gcaacaggta cagctgatga gcaacagccc ccgcgcggtc ttcctcgacc acgcctccct
      841 cgacctcggc gatctcgacc tggccccgct gcgccaggtg ttcggcgcac tcgtgctgca
      901 tgacgcgtcc accgccgaac aggccgccga gcggctgcgc ggcgctcagg tggcgatcag
      961 caacaaggtg cgcctggacg ccgccaccct ggccgcctgc cccgaactca agctgatcct
     1021 ggtggccgcc accggcacca acaacgtcga cctggccgcc gcccgcgagc acggcatcac
     1081 cgtcgccaac tgccgcggct acggcaccgc ctccgtggcc cagcacaccc tgatgctgct
     1141 gctcgccctg gccacccgcc tgccggacta ccaggccgcg atccgcgacg gcgcctggca
     1201 gcgcgccagc cagttctgcc tgctggactt tcccatcgtc gagctggagg gcaagaccct
     1261 tggcctgctc ggccatggtg agctgggcgg cgccgtggcg cgcctggccg aagccctggg
     1321 catgcgcgtg ctgctcggcg ccctgcccgg ccggccgccg cgcgccgatc gcctgccgct
     1381 ggccgagctg ctgccgcagg tagacgccct gaccctgcat tgcccgctga ccgatcagac
     1441 ccgcaacctg atcggcgccg ccgagctggc actgatgaag ccccaggcgc tgctgatcaa
     1501 caccgcgcgc ggcggcctgg tcgacgaaca ggccctggcc gacgccctgc gcgccggccg
     1561 gctgggcggc gccgcattcg acgtgctcag cgaggaacca ccgcgtaacg gcaacccgct
     1621 gctggcgcca gacattccgc gcctgatcct caccccgcac aacgcctggg gcagccgcga
     1681 gtcgcgccag cgcatgatcg gccagctggc cgagaacgcc gcggccttct tcgccggcgc
     1741 tcccatccgg gtggtcagcg ggtaaactgc gcgccctttt cgcccggaga tcgccatgga
     1801 cccacgaagc gaggtgctgc tgcgccaggc cgagctgttc cagggcgacc tgttgctcgc
     1861 cggcctgccc gccgacgacc tgctcggcca gctgccgcgc gcccagggct ggagctggca
     1921 tgccggcgag cagaacgccc tggaggcgcg cttcgccggc cgcagccgct tcggcacccg
     1981 cgcgcccgat cacgccttcg acagcgcggt gctgttcctg cccaagtccc gcgaactcac
     2041 cgactacctg ctgcagaccc tggccgcgcg cctggccggc cgcgagctgt atctggtcgg
     2101 cgagaagcgt ggcggcatcg aacgcgccgc caagcaactg gccgtctatg gcaagccgcg
     2161 caagctggac agcgcgcgcc actgccagct gtggcaggta acgg
//
LOCUS       DATIHC010000396         4906 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19757, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000396 DATIHC010000000
VERSION     DATIHC010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4906)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4906)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4906
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19757"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1078)
                     /locus_tag="VLF16_06325"
     CDS             complement(<1..1078)
                     /locus_tag="VLF16_06325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014822149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HSX70530.1"
                     /translation="MSAIDADTQVLLIDDDEHLRLALAQTLDLAGLRVATLADARGVA
                     ERIEPDWPGVVVSDIRMPGVDGLHLLQQLRERDAELPVLLITGHGDVPLAVQAMRAGA
                     YDFLEKPFASEALLDGVRRALELRRLVLENRSLRLALADRSELGARLIGQSAPMLRLR
                     EQVGALAAINTDVLILGETGAGKEVVARALHDLSARRKGPFVAINAGALAESVVESEL
                     FGHEPGAFTGAQKRRIGKFEFANGGTLFLDEIESMSPDVQVKLLRLLQERVVERLGGN
                     QLVPLDIRVIAATKEDLRVAADQGRFRADLYYRLNVAPLRIPPLRERDADILLLFQHH
                     AEAAAERHGLPIRELQAGQRAQLLS"
     gene            complement(1075..2883)
                     /locus_tag="VLF16_06330"
     CDS             complement(1075..2883)
                     /locus_tag="VLF16_06330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSX70531.1"
                     /translation="MTLPPMPPRPRWRNLALLALLLAPLLWPLQYFAERYYRSELAEQ
                     NRQTLDLYVANLFGTLRRYEVLPNILADLPALRALFAAPEDAARRDSANRLLARVRGE
                     TGADVIYLMGPAGTTLASSNWDQADSFVGRDFSYRPYFREALAGKPGRFFGLGTTSRK
                     RGYFFSSPVRDGERVIGILVVKVDLDDSEALWGNTPEQLMVTDRNGVVIISSRAEWRF
                     RATRALDNAERAAIAANQPYPTQAPTPLRLDGDAWLIQSRELQEAGLTASILAPRQLI
                     DRQVSTTLAVGGAALLALLLLLGLLLQRRRHYLERIAFDARARRDLEIRVAERTRDLE
                     TLNHRLKDEVLEREHTQQELVRTQDELVQAGKLTALGTMSASISHELNQPLAAIRSYA
                     DNAGVLLDHQRLDDARGNLRQISELTGRMASIIAHLRAFARRDRHAPESVALQPALDD
                     ALALLAKRRRALEVELIRDLPDATLWVQAGETRLRQVLGNLLANALDAVAEKAPPRRI
                     SLSAEVTAEGVNLLLRDNGPGFSEQALRHAREPFFTTKTSTQGLGLGLAICETLMRAL
                     GGELLLANHPAGGALITLQPRGAAPGANLQSPEEFS"
     gene            complement(2927..3796)
                     /gene="rfbD"
                     /locus_tag="VLF16_06335"
     CDS             complement(2927..3796)
                     /gene="rfbD"
                     /locus_tag="VLF16_06335"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013793139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008831 - dTDP-4-dehydrorhamnose reductase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HSX70532.1"
                     /translation="MRVLITGRHGQVSRELQRCLADQAELLVLGQEQLDLGDAAAIRR
                     QVRELKPDLLINAAAHTAVDQAESEPERAFAINAGAPGVLAEEAASLAVPLIHYSTDY
                     VFDGSKDAPYHEDDLTAPLGVYGRSKLAGEEAVRAVGGQHLILRTSWVYSLHGKNFLL
                     TMQRLLQEREELRVVADQIGAPTWAGSIASATTELVRHWKEGRAGAWGTYHLTGQGET
                     SWFGFAEAIAAQLRSQGRPCARLVPIAASEYPTPAQRPLNSRLDCSRLQREWNIRLPN
                     WHDALLECLNSPR"
     gene            complement(3793..4338)
                     /gene="rfbC"
                     /locus_tag="VLF16_06340"
     CDS             complement(3793..4338)
                     /gene="rfbC"
                     /locus_tag="VLF16_06340"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005746651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008830 - dTDP-4-dehydrorhamnose
                     3,5-epimerase activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HSX70533.1"
                     /translation="MNIVTTALPEVLILEPKVFGDERGFFYESFNARAFAEATGVQRD
                     FVQDNHSRSQRGVLRGLHYQIQQPQGKLVRVSQGEVLDVAVDIRRSSPNFGRWVGVRL
                     SAENKRQLWVPEGFAHGFVVLSEYAEFLYKTTDYYAPAFERSIRWDDPELAIDWQFDG
                     IPQLSAKDQAAVVLRDAELFP"
     gene            complement(4335..>4906)
                     /locus_tag="VLF16_06345"
     CDS             complement(4335..>4906)
                     /locus_tag="VLF16_06345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003464341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HSX70534.1"
                     /translation="VCLILGDNIFHGQHFSEMLQRAAAAESGATVFGYWVRDPERFGV
                     VEFDGAGHAISIEEKPTQPKSSYAVTGLYFYDNDVIEIARAVKPSPRGELEITDVNNA
                     YLQRGDLRVERFGRGFAWLDTGTHDSLLEASQYVQTIEHRQGLKVACLEEIAFQQGWI
                     NREQLLAQAKAFGKTGYGQYLYQVAGEQP"
BASE COUNT          708 a         1606 c         1807 g          785 t
ORIGIN      
        1 ggctgagcag ctgggcgcgc tgtcctgcct gcagctcgcg aatcggcagg ccatggcgct
       61 cggcagccgc ctcggcatgg tgctggaaca gcagcaggat gtccgcgtca cgttcgcgca
      121 gcggtggaat gcgcagcggt gcgacgttca ggcggtagta gaggtcggcg cggaagcggc
      181 cctggtcggc ggccacgcgc aggtcttcct tggtggcggc gatcacgcgg atgtccagcg
      241 ggaccagctg gttaccgccg aggcgctcga ccacccgttc ctgcagcagg cgcagcagct
      301 tgacctgcac gtccgggctc atgctctcga tctcgtcgag gaacagggtg ccaccgttgg
      361 cgaactcgaa cttgccgatg cgccgcttct gcgcgccggt gaaggcgccc ggctcgtggc
      421 cgaacagctc gctctccacc accgattcgg ccagggcgcc ggcgttgatc gccacgaacg
      481 gtcccttgcg acgcgccgag aggtcgtgca gggcgcgcgc caccacctcc ttgccggcgc
      541 cggtttcgcc gaggatcagc acgtcggtgt tgatcgccgc cagcgcgccg acctgttcgc
      601 gcaggcgcag catcggcgcc gactggccga tcagcctcgc gcccagttcg ctgcgatccg
      661 ccagggccag gcgcaggctg cggttctcca gcaccaggcg gcgtagttcc agggcgcggc
      721 gcacgccgtc gagcagggcc tcgctggcga atggcttttc caggaagtcg taggcacctg
      781 cgcgcatggc ctgcaccgcc agcggcacgt cgccgtggcc ggtgatcaac agcacgggca
      841 gctccgcatc gcgttcacgc agctgttgca gcaggtgcag gccgtcgacg cccggcatgc
      901 ggatgtcgct gaccaccacg ccgggccaat ccggctcgat gcgctcggcc acgccgcggg
      961 catcggccag cgtcgcgacg cgcagcccgg cgaggtcgag ggtctgggcc agggccaggc
     1021 gcagatgttc gtcgtcgtcg atcagcagga cctgggtgtc ggcgtcgatg gcactcatga
     1081 aaattcctcg ggcgattgca ggttggcgcc gggcgcggca ccgcgcggct gcagggtgat
     1141 cagcgcgccg ccggccgggt ggttggccag cagcagctcg ccgcccaggg cgcgcatcag
     1201 cgtctcgcag atggccagcc caaggccgag gccctgggtg ctggtcttgg tggtgaagaa
     1261 gggctcgcgg gcgtgccgca gcgcctgttc ggagaagccg gggccgttgt cgcgcagcaa
     1321 caggttgacg ccctcggcgg tgacctcggc actcagcgag atgcgccgcg gcggcgcctt
     1381 ctcggccacg gcatcgaggg cgttggccag caggttgccg agcacctggc gcaggcgcgt
     1441 ctcgccggcc tggacccaga gcgtggcgtc cggcaggtcg cggatcagct cgacctccag
     1501 ggcgcggcgg cgtttggcga gcagggccag ggcgtcatcg agcgccggtt gcagggcgac
     1561 gctctcgggc gcgtgccggt cgcgccgggc gaaggcccgc aggtgcgcga tgatcgaggc
     1621 catgcgcccg gtcagctcgc tgatctggcg caggttgccg cgggcatcgt cgaggcgctg
     1681 gtggtcgagc agcacgccgg cgttgtcggc gtagctgcga atcgccgcca gcggctggtt
     1741 cagctcgtgg ctgatgctgg cgctcatggt gccgagggcc gtcagcttgc cggcctgcac
     1801 cagttcgtcc tgggtgcgca ccagctcctg ctgggtgtgc tcgcgctcca gcacctcgtc
     1861 cttcaggcgg tggttcagcg tctccaggtc gcgggtgcgc tcggccacgc ggatctccag
     1921 atctcgccgc gcgcgggcat cgaaggcgat gcgctcgagg tagtggcgcc gccgttgcag
     1981 cagcaggccg agcagcagca gcagggccag cagcgccgcg ccaccgacgg cgagcgttgt
     2041 gctcacctgg cggtcgatca gctggcgcgg ggcgaggatg ctggcggtca gcccggcttc
     2101 ctgcagctcg cggctctgga tgagccaggc gtcgccgtcc agccgcagcg gcgtcggcgc
     2161 ctgggtcggg tagggctgat tggcggctat tgcggcccgc tcggcattgt ccagcgcgcg
     2221 ggtggcccgg aagcgccact cagcgcgcga ggagatgatc accacgccgt tgcggtcggt
     2281 gaccatcagc tgctcgggcg tgttgcccca cagggcctcg gagtcgtcga ggtcgacctt
     2341 gaccaccagg atgccgatca cccgctcgcc gtcgcgcacc gggctggaaa agaagtagcc
     2401 gcgcttgcgc gaagtggtgc cgaggccgaa gaagcggccc ggcttgccgg ccagggcctc
     2461 gcggaaatag ggacggtagc tgaagtcgcg gccgacgaaa ctgtccgcct ggtcccagtt
     2521 ggacgaggcc agcgtggtgc ccgcggggcc catcaggtag atgacgtcgg cgccggtctc
     2581 gccgcggacc cgggccagca ggcgattggc gctgtcgcgc cgggcggcat cttccggcgc
     2641 ggcgaacagg gcgcgcaggg ccggcaggtc ggccaggatg ttcggcagca cctcgtagcg
     2701 gcgcagggta ccgaacaggt tggcgacgta caggtcgagg gtctgacgat tctgctcggc
     2761 cagctcgctg cggtagtagc gctcggcgaa atactgcagc ggccacagca gcggtgcgag
     2821 caacagcgcc agcagggcca gattgcgcca gcgcggacgg ggaggcatgg ggggcaaggt
     2881 catgtcgatg cgcctggatg atgggcgcat tatgcaccgc cccgttctag cgtgggctgt
     2941 tcaggcactc cagcagggcg tcgtgccagt tcggcaggcg gatgttccac tcccgctgca
     3001 ggcgcgaaca gtccagccgg gagttgagtg ggcgctgggc tggtgtcggg tattcgctgg
     3061 cggcaatggg taccaggcgg gcgcagggcc tgccctggct gcgcagttgc gcggcgatgg
     3121 cctcggcgaa gccgaaccag gaggtctcgc cctggccggt cagatgatag gtgccccagg
     3181 cgccggcccg gccttccttc cagtggcgga ccagctcggt cgtcgccgag gcgatgctgc
     3241 cggcccaggt cggcgcgccg atctggtcgg cgaccacgcg caattcctcg cgttcctgca
     3301 gcaggcgctg catggtcaac aggaaattct tgccgtgcag cgagtagacc cagctggtgc
     3361 gcaggatcag gtgctgtccg ccgaccgcgc gaacggcctc ctcgccggcc agcttgctgc
     3421 ggccatacac gcccaagggg gcggtgaggt cgtcctcgtg gtagggcgcg tccttgctcc
     3481 cgtcgaagac gtagtcggtg gagtagtgga tcagcggcac ggccaatgat gccgcctctt
     3541 ccgccagcac gccgggggcg ccggcgttga tggcgaaggc acgctcgggc tcgctctcgg
     3601 cctggtccac ggcggtgtgg gcggcggcgt tgatcagcag gtccggcttc agctcgcgca
     3661 cctggcggcg aatcgccgcg gcatcgccga ggtcgagctg ctcctgaccg agcaccagca
     3721 gttccgcctg atccgccagg cagcgctgca gctcacggga aacctggccg tggcggccgg
     3781 tgatcagcac tctcatggga acagttcggc gtcgcgcagg acgacggcag cctggtcctt
     3841 ggccgacagc tgggggatgc cgtcgaactg ccagtcgatg gccagttcgg ggtcgtccca
     3901 acggatgctg cgctcgaagg ccggggcgta gtagtcggtg gtcttgtaga ggaactcggc
     3961 gtattcgctg agcaccacga agccgtgggc gaagccttcc ggcacccaga gctggcgctt
     4021 gttctcggcg gacaggcgca cgccgaccca gcgcccgaag ttgggcgagc tgcggcggat
     4081 gtccaccgcc acgtccagca cttcgccctg gctcacgcgg accagtttcc cctggggctg
     4141 ctggatctgg taatgcagcc cgcgcagcac gccgcgctga gagcgcgagt ggttgtcctg
     4201 gacgaagtcg cgctgcaccc cggtggcctc cgcgaaggcg cgggcgttga agctctcgta
     4261 gaagaagccg cgctcatcgc cgaacacctt cggctcgagg atcagcactt ccggcagggc
     4321 ggtagtgacg atattcacgg ttgttccccg gctacctgat agaggtactg gccgtagccg
     4381 gtcttgccga aagccttggc ctgggcaagt agctgctcgc ggtttatcca gccctgctgg
     4441 aaggcgatct cttccaggca ggcgactttc aggccctggc ggtgttcgat ggtctgcacg
     4501 tactgcgagg cctcgagcag gctatcgtgg gtgccggtgt ccagccaggc gaaaccacgg
     4561 ccgaagcgct ccacacgcag atcgccgcgc tgcaggtagg cgttgttgac gtcggtgatc
     4621 tccagctcgc cgcgcggcga gggtttcacg gcgcgggcga tctcgatcac gtcgttgtcg
     4681 tagaaataca ggccggtcac cgcgtagctg gatttcggct gcgtcggctt ctcttcgatg
     4741 gagatggcat ggcccgcacc gtcgaactcg accacgccga agcgctctgg atcgcgcacc
     4801 cagtaaccga acaccgtggc gccggattcg gctgcggcgg cgcgttggag catctcgctg
     4861 aagtgctgcc cgtggaagat gttgtcaccg aggatcaggc agacgg
//
LOCUS       DATIHC010000397         3518 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12688, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000397 DATIHC010000000
VERSION     DATIHC010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3518
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12688"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            93..3461
                     /locus_tag="VLF16_06350"
     CDS             93..3461
                     /locus_tag="VLF16_06350"
                     /inference="COORDINATES: protein motif:HMM:NF042738.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6701 domain-containing protein"
                     /protein_id="HSX70535.1"
                     /translation="MASSQYVQRADSNLLDLTGSFTIGVWVKPRSLPASGLMNILSKD
                     ENYEFHVNPNGTINWWWQTAAPSATREFNSTAALTVGQWSHVLIRYTQGDQRIYINGT
                     LAGQASFNGNPVVNGDPLQLGADQNAAGRYFDGDLDELRIYDTALTPAQITALYQERH
                     QCVVRLQCFNDDFNDGSLGDDWAVTSRGSTPFTPNVTSQRMRLTSAQGNVSTASTLQR
                     LFPAAGNYIQVQFKHYAYGGNGADGIAVVLSDAWVTPQPGAFGGPLGYGTRGDAANPG
                     FFGGWLGIGIDEFGNFSTEGGPNGPGRRLDSVAIRGSGKPGWTSGYRYLAGTAANLSP
                     GIDVSGNTPGPGHTYRITLDARFSSQTLVTVERDTGSGFVVLPNLNAVNVQAMANEQA
                     ALPGDFYLSLTGSTGGSNNVHELDDLQVCATNVKTVGQQIDHFEFVYSGTALTCNPQP
                     ITIRACLNSSCSSLFTDPVSVPLSPVSYWSAAAPASFNGNVLSFNGGTAQAYLSVAAA
                     GSATLGVGTSIPPAKPNSLPTCSTANCRITYADSGLLLSVPNMLAAKPTAATLSAVRK
                     ADNALQCVPAFANVTRNISFTSGYSNPTTGTQPVVVNNTNVRGTPVSVSLSFDATGTA
                     PLTVRYDDAGEMKLTARYLGSAGNSDEGLVLDNTSTDDLFVSKPYGLCLQRPASITAN
                     LGNCSNADCAVFPGGIRAGDSFPLTIRAVGWQADGEALAATQLCSGNITTPNFRHDGI
                     TLTSTLVAPTDGVPGEVTPNTYTHGLGNSTITNHSLSEVGVFRVSAKPSTGGYLDGET
                     VSGGTSDLVGRLIPAYLTAAGSASLTPSCGSAFSYQGQPIGFASARQPTLIVTARNRV
                     GGATTNYDRGAFWKLAAPGVGVYSSVTGIATRDARLTTELAQPGVPVALQVVGADNGD
                     GARTYRWTGEQLLYQAPILPSSDDYPFAAKVRQTFPAIDLREVDQGQVVCHGNGSGCM
                     DYAYDFSEDPGSEVRLGRLRIGNAHGSELQSLTLPLVVESWQNQAGGSFQPEGLDTCT
                     NLGTPALDAYTGNLSAGKTGATLGALTGGIGSVTLSAPGAGNDGSVQVSFPNSPAWLQ
                     YPWDGANRQLARGLASFGIYKGAAPLIFRRELYR"
BASE COUNT          683 a         1070 c         1065 g          700 t
ORIGIN      
        1 gtactgttat caacggcgcg gcctcagcca atgcatcgcc agcgatacct gaggtgaatt
       61 cacagggaac ctgcggctat ggcgcgttta gcatggcttc cagccagtat gtgcagcgag
      121 ccgatagcaa cctgctcgac ctgaccggta gtttcaccat aggggtctgg gtcaaaccgc
      181 gttctctgcc ggcgtcgggt ctgatgaaca tcctctcgaa ggacgagaac tacgagttcc
      241 atgtgaaccc caacggaact atcaactggt ggtggcagac cgctgctccc agcgccaccc
      301 gcgaattcaa cagcaccgcg gcgctgaccg ttggccagtg gagccatgtg ctgatccgct
      361 acacccaggg cgatcaacgt atctatatca atggcaccct ggcagggcag gctagcttca
      421 acggtaaccc ggtagtgaat ggcgaccctt tgcagctggg agccgaccag aacgccgccg
      481 gtcggtattt cgatggcgat ctggatgaat tgcgtattta cgacaccgcg ctgaccccgg
      541 cgcagatcac cgcgctgtac caagagcggc atcaatgtgt ggtgcgtctg caatgcttca
      601 acgatgattt caacgatggc agcctgggcg acgattgggc tgtcaccagc cgcggatcga
      661 cgcctttcac accgaacgtc accagtcagc gtatgcgcct gaccagtgcc cagggcaacg
      721 tttccacggc ctcgaccttg caacgtcttt ttcctgctgc cggcaattac atccaagtgc
      781 aattcaagca ctacgcctat gggggtaacg gtgccgacgg cattgccgtt gtgctatccg
      841 atgcttgggt gacgccacag ccgggcgcct ttggcggtcc actgggttac ggcacgcggg
      901 gcgacgctgc caacccaggg ttcttcggtg gctggttagg gatcggcatt gatgagttcg
      961 gcaacttctc caccgagggc gggccgaacg gccctggtcg gcggctcgac tctgtagcga
     1021 ttcgcggctc gggcaagccg ggctggacca gtggctaccg ttatctcgcc ggcactgcgg
     1081 ctaacctgag tcctgggatt gatgtgtcag gcaacactcc agggccaggg catacctacc
     1141 gcattacctt ggatgcgcgc ttcagcagcc agacattggt gaccgtggag cgagatacgg
     1201 ggagcggctt tgtcgtgttg cccaatctca atgcggtcaa cgtgcaggcc atggccaacg
     1261 agcaggccgc gttacctgga gacttctatc tgtcgctgac cggttcgacc ggtggctcga
     1321 acaatgtcca tgagttggac gaccttcagg tttgcgccac caatgtcaag acggtcggcc
     1381 aacagatcga tcatttcgag ttcgtctatt ccggcaccgc gctgacttgc aatccgcagc
     1441 cgataaccat ccgtgcttgc ctcaacagca gctgcagcag cctgttcacc gacccggtca
     1501 gcgttccatt gagcccggta agttactgga gtgcagcggc gccggcttct ttcaacggca
     1561 atgtgctcag cttcaatgga ggtacggccc aagcatatct gagcgtagcg gcggcaggtt
     1621 ctgcaacgct gggtgtcggc acctcgatac cacccgctaa gccgaacagc ttgccgacgt
     1681 gctcgacggc caactgtcga attacttatg ccgacagcgg cctgctgttg agcgtgccga
     1741 atatgctggc ggccaagccg acagcggcga cgctaagcgc tgtgcgcaag gcggacaacg
     1801 ccctgcaatg cgtgccggcc tttgccaacg tcacccgcaa tatcagtttc acctcggggt
     1861 acagcaaccc aaccaccggc actcagccag tggtggtcaa caacaccaat gtgcgcggta
     1921 cgccagtcag cgtaagtctc tctttcgatg ccaccggcac cgcgccgctg actgtgcgct
     1981 acgatgatgc cggggagatg aagctcactg cccgctatct gggtagcgcc ggtaattctg
     2041 atgaaggact ggtgctggat aacactagta ccgacgacct gttcgtcagc aagccctatg
     2101 gcctttgtct gcagcggcct gcgtccataa ccgcgaatct cggcaactgt agtaacgctg
     2161 actgcgcggt attccccggt ggtatccgtg ccggcgacag cttcccgctg accattcgcg
     2221 ccgtcggctg gcaggccgat ggcgaggcgc tggctgcgac ccagttgtgc agtggcaata
     2281 tcaccacgcc gaactttcgg cacgatggca ttaccctgac cagcaccttg gtggcaccga
     2341 ccgatggcgt gccgggagag gtcacaccca atacctacac tcacggcttg ggcaattcga
     2401 ccataaccaa ccactcgctc tccgaggtcg gtgtattccg agtcagcgcc aaaccgtcaa
     2461 ccggcggcta tctggatggc gaaaccgtga gcggtggcac cagcgatctg gtggggcgtc
     2521 tgatcccggc gtatctgacg gccgcgggta gcgctagcct aacgccaagt tgtggtagcg
     2581 cgttcagcta tcaaggccag ccgataggct ttgccagcgc tcggcagcca accctgatag
     2641 tgacagccag aaaccgcgtt ggtggtgcaa ctactaacta tgaccgaggc gcattttgga
     2701 agctcgctgc tcccggagtg ggcgtctata gctcggtcac ggggattgca acacgggatg
     2761 cacgtctgac aaccgaacta gcgcaacctg gcgtaccagt tgctttgcaa gttgtcggtg
     2821 cggataacgg cgacggggct cgtacctatc gctggacggg ggagcagttg ctttatcagg
     2881 cgccaattct gcccagcagc gacgactatc ccttcgctgc caaggtacgc cagaccttcc
     2941 ctgctattga tctgcgcgag gtcgaccagg gccaggtggt ctgccacggc aacggcagtg
     3001 gttgcatgga ctatgcctat gatttctctg aagatcctgg cagcgaagtg cgcctcggtc
     3061 gcctgcgcat cggcaatgcc catggttccg agctgcagag cctgaccctg ccgctggtgg
     3121 tggagtcctg gcagaaccag gcgggtggca gcttccagcc tgaaggccta gatacctgca
     3181 ccaacttggg gacgcctgcc ctcgatgcgt acaccggcaa cctgtcggcc gggaagacag
     3241 gggcgactct gggggcgctg acgggtggca taggtagcgt cacgctgagc gccccgggtg
     3301 ccggcaatga cggttcggta caggtcagct tccccaactc gccggcctgg ctacagtatc
     3361 cttgggatgg agccaatcgc cagctggcgc gaggcttggc cagcttcggc atctacaagg
     3421 gtgcggcgcc gttgatcttc cgccgcgagc tttatcgcta gaacgtaaaa aggccgcctc
     3481 ttcgggcggc ctttttgcct gggtgtaaaa gaggggat
//
LOCUS       DATIHC010000398         1987 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_40813, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000398 DATIHC010000000
VERSION     DATIHC010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1987)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1987)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1987
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40813"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(149..880)
                     /locus_tag="VLF16_06355"
     CDS             complement(149..880)
                     /locus_tag="VLF16_06355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013715206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSX70536.1"
                     /translation="MNSDKKVVLVIGAGDATGGAIAKRFAREGYVACVTRRSADKLQP
                     LVDEIRAGGGEAHGFASDARKEEEVAALVEGIERDIGPIEAFVFNIGANVPCSILDET
                     ARKYFKIWEMACFAGFLSAQAVARRMVARGRGTILFTGATAGLRGASHFAAFAGAKHG
                     IRALAQSMARELGPRNIHVAHVVVDGAIDTAFIRDNFPDLYARKDQDGILDPAHIADN
                     YWFLHAQPRDAWTFELDLRPWTEKW"
     gene            961..1524
                     /locus_tag="VLF16_06360"
     CDS             961..1524
                     /locus_tag="VLF16_06360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020297801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HSX70537.1"
                     /translation="MRYSVEHKAQTREKLLQTSGALAKRGGFGGTGVDGLMKAIGLTG
                     GAFYGHFSSKDELFAAIVERELSHSIELLGSGSRDRLQRCLAIYLSMKHVEQPDSGCA
                     LPTLGPEIARADLSVRENAEHWLVRLQQAWGEALDDPQLAWAILAQCVGALVVARMLA
                     TPQRQEEVLQSSRTLIQSQLRDRPDAD"
     gene            complement(1672..>1987)
                     /locus_tag="VLF16_06365"
     CDS             complement(1672..>1987)
                     /locus_tag="VLF16_06365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003242512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSX70538.1"
                     /translation="LKVALDDFGSGFASYAYLRHLPLDLLKIDGTFVRGIERDPINRA
                     MVGSMVQIAHQLGLRTVAEFVENEAAQTCLRELGIDYAQGYLIDRPRPLAELADEQAE
                     AR"
BASE COUNT          302 a          668 c          692 g          325 t
ORIGIN      
        1 ctctagggtc ttgctcatga agggcttctc tcttgtgatt gtgcggccaa ggtatcgcgg
       61 ccccgtgagc ggcgttcggg tccggggggt tagaagcgca gctggccgta gccggtgagc
      121 tagtgcatcg acccgccaac ggcgccgttc accatttctc ggtccagggg cgcagatcga
      181 gttcgaaggt ccaggcgtcg cgcggctggg cgtggaggaa ccagtagttg tcggcgatgt
      241 gcgccgggtc gaggatgccg tcctggtcct tgcgcgcgta caggtccggg aagttgtcgc
      301 ggatgaaggc ggtgtcgatg gcgccgtcca ccaccacatg ggcgacgtgg atgttccgcg
      361 gccccagctc ccgcgccatg ctctgcgcca gggcgcggat gccatgcttg gcgccggcga
      421 aggcggcgaa gtgcgaggca ccgcgcaggc ctgcggtggc gccggtgaac aggatggtgc
      481 cgcgaccgcg ggcgaccatg cgccgggcca cggcctgggc gctgaggaag ccggcgaagc
      541 aggccatctc ccagatcttg aagtacttgc gcgcggtctc gtcgaggatg ctgcacggca
      601 cgttggcgcc gatattgaag acgaaggcct cgatcggacc gatgtcgcgc tcgatgccct
      661 cgaccagcgc cgccacctct tcttccttgc gcgcgtcgga ggcgaagccg tgggcctcgc
      721 cgccgccggc gcggatctcg tcgaccagcg gctgcagctt gtcggcgctg cgccgggtta
      781 cgcaggccac gtagccctcg cgggcgaagc gcttggcgat ggcaccgccg gtggcgtcgc
      841 cggcgccgat caccagcacc accttcttgt cgctattcat gtcgccacct tttgataaac
      901 gatcgtttag taaacggacg ttatgctacg ctcccgacac ccgtcaagca ggagttggtg
      961 atgcgctatt ccgtcgaaca caaggcccag acccgcgaga agctgctgca gaccagcggc
     1021 gccctggcca agcgcggcgg tttcggcggt accggggtcg acggcctgat gaaggccatc
     1081 ggcctcaccg gcggtgcgtt ctacggtcat ttctcgtcca aggacgagct gttcgccgcc
     1141 atcgtcgagc gcgagctgag ccacagtatc gagctgctcg gcagcggcag ccgcgacagg
     1201 ctgcagcgct gcctggccat ctacctgagc atgaagcacg tcgagcagcc cgacagcggc
     1261 tgtgcgctgc ccaccctcgg cccggagatc gcccgcgccg acctcagcgt gcgcgagaac
     1321 gccgagcact ggctggtgcg cctgcaacag gcgtggggcg aggcgctcga cgacccgcaa
     1381 ctggcctggg ccatcctcgc ccagtgcgtc ggcgcgctgg tggtggcgcg catgctggcc
     1441 accccgcagc gccaggagga ggtgctgcag tcgagccgga cgctgatcca gtcgcagctg
     1501 cgtgatcgcc cggacgccga ctgaaacagc ggtctgctgc gtcagtcgca tcgtctctca
     1561 gcgatcgaca gcggatcgat gcctgcgcgc tgtcgtggcc tccgcggtca atcgcatcgc
     1621 tcgatgccga gccccgcgcc ggcaccgcgg cgactacctg cggcgcagcg cctaccgcgc
     1681 ttcggcctgc tcgtcggcca actccgccag cggccgcggg cggtcgatga gatagccctg
     1741 ggcatagtcg atgcccagct cgcgcaggca ggtctgggcc gcctcgttct cgacgaactc
     1801 ggccaccgtg cgcagcccca gctgatgggc gatctgcacc atcgagccga ccatggcgcg
     1861 gttgatcggg tcgcgctcga tgccgcgcac gaaggtgccg tcgattttca gcaggtccag
     1921 cggcagatgg cgcaggtagg cgtaggaggc aaagccgctg ccgaagtcgt ccagcgccac
     1981 cttgagc
//
LOCUS       DATIHC010000399         4051 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43128, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000399 DATIHC010000000
VERSION     DATIHC010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4051
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43128"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..442
                     /locus_tag="VLF16_06370"
     CDS             <1..442
                     /locus_tag="VLF16_06370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012020029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF6436 domain-containing protein"
                     /protein_id="HSX70539.1"
                     /translation="FMGSQLRLPADLAGPGPIRLVHFWDPACPCNVGNQQHLGELVQQ
                     FAARGVHFYAVRKAGSQGRLPANLAALQPLESLPGSEGLPASPAVAIWDQRGELAYFG
                     PYSEGAVCTSANSFIEPILEALGAGRPVRADSNLAVGCFCDWRD"
     gene            complement(597..1355)
                     /locus_tag="VLF16_06375"
     CDS             complement(597..1355)
                     /locus_tag="VLF16_06375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020797326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NRDE family protein"
                     /protein_id="HSX70540.1"
                     /translation="MCLIVFAWRPGHPQPLVLAANRDEFYDRASLPLAEWEDAPGLHA
                     GRDLRAGGTWLGVTADGRFAALTNIRDPRQPRGARSRGELPEGFLRGDADAEAFLADL
                     ARRSDDYSGFNLLLGDRHALYYFNSEEGLARRLEPGVYGLSNARLDTPWPKVRRATDA
                     LASTLDDPQPQHLLALLGDRQQPPREQLPNTGVGLDWEMLLATVFIVGPGYGTRASSA
                     LTLNAEGGLRLVERSFDSRGQVAGEVDLRLGPQQ"
     gene            1468..2250
                     /locus_tag="VLF16_06380"
     CDS             1468..2250
                     /locus_tag="VLF16_06380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011536220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HSX70541.1"
                     /translation="MEFLLYLLLGAAAGVLAGLFGVGGGIIIVPVLVFSFTAQGFDPA
                     VLTHLAVGTSLATIIFTSVNSVLEHQRKGAVLWPVFAWMSLGILLGAALGSLTAAAIQ
                     GPMLQKIIGVFAIVIAVQMGLGLKPKASRAVPGKPGLTGAGAVIGWASAIFGIGGGSL
                     TVPFLTWRSVPMQQAVATSSACGLPIALASTLSFMVLGWNDAHLPAWSLGFVYLPALA
                     GIAITSMFFARIGARLAHRLPAHVLKRLFALLLLCVGVSFLI"
     gene            2260..3060
                     /gene="lgt"
                     /locus_tag="VLF16_06385"
     CDS             2260..3060
                     /gene="lgt"
                     /locus_tag="VLF16_06385"
                     /EC_number="2.5.1.145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013793348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HSX70542.1"
                     /translation="MLPYPQIDPVAIALGPLKIHWYGLMYLIGIGGAWLLASRRLKQF
                     DPSWSKEKLSDLVFWVAMGVILGGRLGYVLFYDLSAYIAEPLKIVRVWEGGMSFHGGL
                     IGVMLATWWFGKRNGKSFFELMDFIAPLVPIGLGAGRIGNFINAELWGKVTDVPWAMV
                     FPNGGPDPRHPSQLYQFALEGVALFVILWAYSRKPRPTMAVSGLFAVCYGIFRFIVEF
                     VRVPDAQLGYLAGGWLTMGQVLCVPMILGGLGLMIWAYRREAAQGAAQ"
     gene            3057..3851
                     /locus_tag="VLF16_06390"
     CDS             3057..3851
                     /locus_tag="VLF16_06390"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003110588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004799 - thymidylate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HSX70543.1"
                     /translation="MKQYLDLMRLVRETGTFKSDRTGTGTYSVFGHQMRFNLADGFPL
                     VTTKKCHLKSIIHELLWFLQGDTNIKYLKDNGVRIWDEWADENGDLGPVYGYQWRSWP
                     APNGESIDQISKLIAMIRKNPDSRRLIVSAWNPALVDEMALPPCHTMFQFYVADGRLS
                     CQLYQRSADIFLGVPFNIASYALLTLMIAQVCDLAPGDFVWTGGDCHLYANHIEQTDL
                     QLTREPLPLPTMKLNPEVKDLFAFRFEDFELQNYQAHPHIAAPVAV"
     gene            3855..>4051
                     /locus_tag="VLF16_06395"
     CDS             3855..>4051
                     /locus_tag="VLF16_06395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015097243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX70544.1"
                     /translation="MLAAELKAFHMVARLGSITQAAKKLGLSQPTVTTQIRNLEAQYG
                     VELFYRGGRRLTLSEEGARLLP"
BASE COUNT          564 a         1410 c         1380 g          697 t
ORIGIN      
        1 gttcatgggc agccagctgc gcctgccagc ggacctggcc gggccagggc cgatccgcct
       61 ggtgcacttc tgggacccgg cctgcccgtg caacgtcggc aatcagcagc acctcggcga
      121 gctggtgcag cagttcgctg cgcgcggcgt gcacttctat gcggtgcgca aggccggcag
      181 ccaaggtcgc ctgccggcca acctggcggc gctgcaaccg ctggagtcgc tgcccggcag
      241 cgagggtctg ccggccagcc cggcggtggc gatctgggat cagcgcggcg agctggccta
      301 ctttggcccc tacagcgagg gcgccgtgtg cacctcggcc aacagcttca tcgagccgat
      361 cctcgaggcc ctgggggctg gccggccggt gcgggcggac agcaacctgg cggtgggctg
      421 cttctgcgac tggcgggact gagggactcc gatggcctga gcgccggccg tgtcgcgttt
      481 aaacggggcg cggcgtgccg gtttgccgct ttcgcccctt cgatgcgctg gcgctcatcc
      541 accggtaagg ccacggctgg gcgttgcggc ctggcgttgg ctcgaaggtc ggaaatctac
      601 tgctgcggtc ccagccgcag atcgacctcg cccgcgacct ggccccggct gtcgaagctg
      661 cgctccacca ggcgcagccc gccctcggcg ttcagggtca gggcgctgct ggcgcgggtg
      721 ccgtagccgg ggccgacgat gaacacggtg gccagcagca tctcccagtc cagaccgacg
      781 ccggtattcg gcagctgttc gcgcggcggc tgctggcggt cgccgagcag ggccagcagg
      841 tgctgcggtt ggggatcgtc gagggtgctg gcgagggcgt ctgtggcgcg ccggaccttg
      901 ggccagggcg tgtcgagccg ggcgttggac aggccgtaga cccctggctc caggcgccgc
      961 gccaggccct cctcggaatt gaagtagtac agcgcgtggc ggtcgccgag cagcaggttg
     1021 aagccgctgt agtcgtcgct gcgccgggcc aggtcggcga gaaaggcctc ggcgtcggcg
     1081 tcgccgcgca gaaagccttc gggcagctcg ccccgtgagc gagcgccgcg cggctggcgc
     1141 gggtcgcgga tattggtcag ggcggcgaag cggccgtcgg ccgtcacccc cagccaggtg
     1201 ccgccggccc gcaggtcgcg ccccgcatgc agcccggggg catcctccca ttcggccagc
     1261 ggcaggctgg cgcggtcgta gaactcgtca cggttggcgg ccagcaccag cggctgcggg
     1321 tgtccggggc gccaggcgaa cacgatcagg cacataccac ctcctctgtc ggctgcccgg
     1381 agtctaacag ccgtgggcat ccatcgcctc ggctggaggg cgcggggccc ttccgttacc
     1441 atgccgcttc gttttcgggg gttgcgcatg gaattcctgc tctatctgct gctcggcgcg
     1501 gcggccgggg tgctggccgg gctgttcggc gtcggcggcg gcatcatcat cgtgccggtg
     1561 ctggtgttca gcttcaccgc ccagggcttc gacccggccg tgctgaccca cctggccgtg
     1621 ggcacctcgc tggccaccat catcttcacc tcggtcaatt cggtgctcga gcaccagcgc
     1681 aagggcgccg tgctgtggcc ggtgttcgcc tggatgagcc tcggcatcct gctcggcgcc
     1741 gccctcggct cgctcaccgc ggcggccatt caggggccga tgctgcagaa gatcatcggc
     1801 gtgttcgcca tcgtcatcgc cgtccagatg ggcctgggct tgaaacccaa ggccagtcgc
     1861 gcggtcccag gcaagcccgg gctgaccggc gccggcgcgg tgatcggctg ggcctcggcg
     1921 atcttcggca tcggcggcgg ctcgctgacc gtcccgttcc tgacctggcg cagcgtgccc
     1981 atgcagcagg cggtggcgac ctcgtcggcg tgcggcctgc ccatcgccct ggccagtacc
     2041 ctgagcttca tggtcctggg ctggaacgac gcgcacctgc cggcctggag cctgggcttc
     2101 gtgtacctgc cggcgctggc cggcatcgcc atcaccagca tgttcttcgc ccgcatcggc
     2161 gcgcgcctgg cgcatcgcct gccggcccat gtactgaaac gtctgttcgc cctgctgttg
     2221 ctgtgcgtgg gcgtgagctt cctcatctaa ggagttgcaa tgctgcccta tccgcagatc
     2281 gacccggtgg ccatcgccct gggcccgctg aagatccact ggtacggcct gatgtacctg
     2341 atcggcatcg gcggcgcctg gctgctggcg tcgcgccgcc tgaagcagtt cgacccgagc
     2401 tggagcaagg agaagctctc cgacctggtg ttctgggtgg ccatgggcgt gatcctcggc
     2461 ggccgcctgg gctacgtgct gttctacgac ctgtccgcct acatcgccga gccgctgaag
     2521 atcgtccgcg tctgggaagg tggcatgtcg ttccacggcg ggctgatcgg cgtgatgctg
     2581 gccacctggt ggttcggcaa gcgcaatggc aagagcttct tcgagctgat ggacttcatc
     2641 gccccgctgg tgccgatcgg tttgggcgcc gggcgcatcg gcaacttcat caacgccgag
     2701 ctgtggggca aggtaaccga cgtgccctgg gcgatggtct tccccaatgg cgggccggac
     2761 ccgcgccacc cgtcgcagct gtaccagttc gccctggagg gcgtggccct gttcgtcatc
     2821 ctctgggcct actcgcgcaa gccgcgcccg accatggcgg tgtctggcct gttcgccgtc
     2881 tgctacggca tcttccgctt catcgtcgaa ttcgtccgcg tgccggacgc ccagctcggc
     2941 tacctcgccg gcggctggct gaccatgggt caggtgctct gcgtgccgat gattctcggc
     3001 ggcctcggcc ttatgatctg ggcctaccgc cgcgaagccg cccaaggagc cgcgcaatga
     3061 aacagtacct cgacctgatg cgcctggtgc gcgagaccgg caccttcaag agcgaccgca
     3121 ccggtaccgg cacctactcg gtgttcggcc accagatgcg cttcaacctg gccgacggct
     3181 ttccgctggt gaccaccaag aagtgccacc tgaagtccat cattcatgag ctgctgtggt
     3241 tcctccaggg cgataccaac atcaagtacc tgaaggacaa cggcgtgcgc atctgggacg
     3301 agtgggccga cgagaacggc gacctcggcc cggtgtacgg ctaccagtgg cgctcctggc
     3361 cggcgccgaa cggcgaatcg atcgaccaga tcagcaagct gatcgcgatg atcaggaaga
     3421 acccggactc gcgccgcctg atcgtctccg cctggaaccc ggcgctggtc gacgagatgg
     3481 ccctgccgcc gtgccacacc atgttccagt tctacgtcgc cgacggccgc ctgagctgtc
     3541 agctgtacca gcgctcggcc gacatcttcc tcggcgtgcc cttcaacatc gccagctatg
     3601 ccctgctgac gctgatgatc gctcaggtct gcgaccttgc gcccggtgac ttcgtctgga
     3661 ccggcggcga ctgccacctg tacgccaacc acatcgagca gaccgacctg cagctgaccc
     3721 gcgagccgct gccgctgccg accatgaagc tgaatcccga ggtgaaggac ctgttcgcct
     3781 tcaggttcga ggacttcgag ctgcagaact accaggccca cccgcacatc gccgcgccgg
     3841 tcgcggtgta aaccatgctg gcggccgagc tcaaggcctt tcacatggtc gcccgcctgg
     3901 gcagcatcac ccaggcggcg aagaagctcg gcctcagcca gcccacggtc accacgcaga
     3961 tccgcaacct cgaggcgcag tacggcgtcg agctgttcta ccgtggcggc cgccgcctga
     4021 ccctgagcga ggagggcgcg cgcctgctgc c
//
LOCUS       DATIHC010000400         3462 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31454, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000400 DATIHC010000000
VERSION     DATIHC010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3462)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3462
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31454"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            84..611
                     /locus_tag="VLF16_06400"
     CDS             84..611
                     /locus_tag="VLF16_06400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003299189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HSX70545.1"
                     /translation="MKNNKGFTLIELVVVIVILGILAAVALPRFMDASRDAHRSALEG
                     AAGGLASAVTLVRSQQEVNRSGGVQGCGGNNCFINVRGFGAGTVDVNANFWPAGTGLT
                     GNPPAVATPSVDDCQSLWAALLQGSAPSVTGANSDYVATATPANSCTYTYQRDNADDT
                     IVYNAATGVVTHQFN"
     gene            632..1099
                     /locus_tag="VLF16_06405"
     CDS             632..1099
                     /locus_tag="VLF16_06405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007153974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HSX70546.1"
                     /translation="MKKQQSGFTLIELIMVIVVLGILAAFALPRFANLGGDARRATIQ
                     GVEASMKSASAIVHSAFLARGGTTATATVAVEGANIAVTNGYPSSSDAGIETAAQISN
                     TEFVVTHTATTTTVQARGATTAANCQVVYTAATSAGTPAVITPPSIVATTDGC"
     gene            1106..1537
                     /locus_tag="VLF16_06410"
     CDS             1106..1537
                     /locus_tag="VLF16_06410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014821218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HSX70547.1"
                     /translation="MRGFTLVELVMVIVIIGILAAVVGPRFFDRRVFDERLYYEEALA
                     AVRYGQKLAVASGCLIQVSLDGNGYRLRRAANCTSGGYTSEVQSPDGQTPFAAALPNG
                     VGVLGGTFPVVFDSLGRPSAAAAATIGAFTINVSAGTGLVQ"
     gene            1534..1989
                     /locus_tag="VLF16_06415"
     CDS             1534..1989
                     /locus_tag="VLF16_06415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014821217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HSX70548.1"
                     /translation="MKRQTGMTLVELVITIVIVGIAAAALYSAMAAIGGRSADPMLRQ
                     QSLAIAEAYLEEILLQPFLDPSNAVCPAPPAGRANFDNVCDYNGLNDNGARDARGQAI
                     AALANYRVQVAVTPQAWAGLAASDALLVQVSVTDPAGQLLRLDGYRARY"
     gene            1989..2849
                     /locus_tag="VLF16_06420"
     CDS             1989..2849
                     /locus_tag="VLF16_06420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014821216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HSX70549.1"
                     /translation="MKRLRGFTLVELVMVIALAGLVAVMIATVLSRPLEAFSGQSRRA
                     ELVDIAAGALQRMSRDVRLAIPNSLRVSADGQAVEFLLIHSAARYRPNRIGEQGLRFS
                     TAAAGTCGSTTQGGRCDSFQVMDLAFNPAGARWLVLYNTGAAGSTVWQPSNPGSVTPT
                     GTTFSTVAGATAGESHIALGNLPAGGFRFAFASPQHRLYLAETVVGYRCQGGQLLRYS
                     YNSLESALPSSPPSGSNPQPVARNVLNCNFTYQPGSTQRAGLLTLGLGISEAGETLQL
                     LQQVHVDNAP"
     gene            2839..3258
                     /locus_tag="VLF16_06425"
     CDS             2839..3258
                     /locus_tag="VLF16_06425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014852480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70550.1"
                     /translation="MRPDAVPSRHARGFGLVAALFLIIVITLVVIAMARLSAVQHGSN
                     SLAIQQARAYQAARAGLEWGISRAFNAGSCTAGSPSLAGGGLSEFAVTVACAANNYVD
                     NEGRALVIYRITATAQNGVPGGRPDYAYRQLTAVVER"
     gene            3255..>3462
                     /locus_tag="VLF16_06430"
     CDS             3255..>3462
                     /locus_tag="VLF16_06430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70551.1"
                     /translation="MIKAVRGVLTVFGMLMTVNALAATYTFNTSGSPAVSGTPSICSG
                     SWGRSGTTFTCDGTLTAASGDILTV"
BASE COUNT          588 a         1092 c         1096 g          686 t
ORIGIN      
        1 cgcgacgcct tcgccctgga gcttgaagcg gtccccgccg cggaattgtc cgcacaaggg
       61 ttttgagtca cagaggaagc gagatgaaga acaacaaagg tttcaccctg atcgaactgg
      121 tggtcgtgat cgtcatcctc ggcatcttgg ccgcggtggc gttgccgcgt ttcatggacg
      181 cgtctcgcga tgcccatcgc tcggcgcttg aaggtgcagc tggaggcctt gcctcggctg
      241 tgacgctagt gcgttcgcag caggaggtga atcgcagcgg tggagtacag ggctgcggtg
      301 gtaataactg cttcatcaac gtgcgggggt ttggtgcggg caccgtcgat gtgaatgcca
      361 acttctggcc ggccggcacc ggtctgactg gcaacccgcc tgctgtggct acccctagcg
      421 tggatgactg ccagagcctg tgggcagccc tgctacaggg ctccgcccca agcgtgaccg
      481 gagccaattc cgactatgtg gctaccgcca cgcctgcaaa tagctgcact tacacctacc
      541 agcgtgacaa tgctgacgac accatcgttt acaacgccgc tactggcgta gtgactcacc
      601 agttcaattg atccaaccag gagccagcac tatgaaaaag caacaaagtg gtttcaccct
      661 gatcgagtta atcatggtta tcgtggtact tggcattctg gcggcctttg ctctgccgcg
      721 ttttgccaac ctcggtggtg atgctcgccg cgcaaccatc caaggggttg aggcctcgat
      781 gaaatcggcc tctgccattg ttcactcagc ttttctggcg cgtggaggta ctactgctac
      841 agctacggtt gctgtggagg gcgcaaatat tgcggtaacc aacggctatc cgtcctcttc
      901 ggatgcaggg atcgagactg ctgcacagat atccaacact gagttcgtgg ttacacacac
      961 tgcaaccact acaacggtgc aggcccgagg tgcgactact gcagcaaact gtcaggttgt
     1021 ctacaccgcc gcgacgtcgg caggtacgcc ggcggttatt acgcctccct cgatcgttgc
     1081 cacgactgac ggctgctgat aattgatgcg cggcttcact ctggtcgagc tggtgatggt
     1141 catagtcatc atcggcatac tcgccgctgt ggtagggccg cgtttctttg atcggcgggt
     1201 gttcgacgag cgcctttact acgaagaggc gctggccgcc gtgcgttacg ggcagaagct
     1261 ggcggtggcc agcggctgcc tgattcaggt cagcctggat ggcaacggtt accgcctgcg
     1321 ccgcgccgct aactgtacct cgggtggcta caccagcgag gtgcagagcc cggatggcca
     1381 gaccccgttc gcggctgcac tgcccaatgg agtcggcgta ttgggcggca cctttccggt
     1441 agtgtttgat tcgcttggcc gcccctcggc ggcggcggcg gccaccatcg gtgcgttcac
     1501 tatcaatgtg agcgccggga ccggcctggt gcaatgaaac gccagaccgg catgaccctg
     1561 gtcgagctgg tgatcaccat tgtgatcgtc ggcatcgccg ccgccgcgtt gtacagcgcc
     1621 atggcggcga ttggcgggcg ttccgccgac ccaatgctgc ggcaacagag cctggcgatt
     1681 gccgaggcct atctcgaaga gattttgctg cagccttttc tcgacccgag caatgccgtc
     1741 tgccccgcgc cgccggcagg ccgggccaat ttcgacaatg tctgcgacta caacggcctg
     1801 aacgacaacg gtgcccgcga cgcccgcggt caggcgattg ccgcattggc caactaccgg
     1861 gtgcaggtgg cggtcacgcc tcaggcctgg gccggactgg ccgccagcga tgccctcctg
     1921 gtgcaggtat cagtgaccga tccagccggc cagctgctgc gcctggatgg ctacagggcg
     1981 cgctactgat gaagcgcctg cgcggtttta ccctggtcga actggtgatg gtcatcgccc
     2041 tggccggctt ggtggcggtg atgatcgcca ccgtattgtc gcgcccactg gaggccttca
     2101 gtgggcagag ccgccgcgcc gagttggtgg atatcgccgc cggagccctg cagcgcatga
     2161 gccgcgacgt ccgtttggcc atccccaact ccctgcgcgt gtccgccgat ggtcaggcgg
     2221 tcgagtttct gctgatccac agcgccgcac gctatcgacc caaccggatc ggtgagcagg
     2281 ggctgcgttt ttccacggct gccgccggca cctgcggcag cactacccag ggcgggcgct
     2341 gcgatagctt tcaggtaatg gacctggctt tcaatccggc cggcgcacgc tggctggtgc
     2401 tatacaacac gggtgcggcg ggcagcacgg tgtggcaacc gagcaatccc ggttcggtca
     2461 cgccgaccgg cacgacgttt tcgactgtgg ccggggctac tgcgggggaa agtcatatcg
     2521 ccctaggcaa cctgccggcg ggtggtttcc gctttgcctt cgcctcgcct cagcaccgcc
     2581 tgtacctggc cgagacggtg gtcggctatc gctgtcaggg cggccagttg ctgcgctaca
     2641 gctacaacag cctggagagt gccttgccga gcagcccgcc gagtggttcc aacccgcagc
     2701 cggtggcgcg caatgtgctc aactgcaact tcacctatca gcccggcagc acccagcgcg
     2761 ccgggctgct gaccctcggc ctcggtatca gcgaggccgg cgagaccctg caattgctgc
     2821 agcaggtgca cgtcgacaat gcgccctgac gccgtcccgt cccgtcatgc ccgtggcttc
     2881 ggcctggtcg cggcgctgtt tctgatcatc gtcataacct tggtggtgat cgccatggcg
     2941 cggctgtccg ccgtgcagca cggcagcaac agcctggcca tccagcaggc tcgcgcatac
     3001 caggccgccc gcgccgggct ggaatgggga ataagccgtg ccttcaatgc cggtagctgt
     3061 acggccggaa gccccagcct ggccggtggc gggctgtccg aattcgcggt aaccgtcgct
     3121 tgtgcggcga acaactacgt ggataacgaa ggcagggcac tggtgatcta ccggatcacc
     3181 gccacggcgc agaatggcgt gcctgggggg cgcccggact atgcctaccg acaactgacg
     3241 gctgtggtgg agcgatgatc aaggcagttc gtggtgttct caccgtattt ggcatgctga
     3301 tgacggtcaa tgccttggcc gcaacctata ccttcaatac cagcggtagt cctgcggtca
     3361 gcggtacgcc atccatctgc tcgggctcgt gggggcgttc cggcaccact ttcacctgcg
     3421 acggcaccct gacggccgcc tctggagaca ttctcacagt ct
//
LOCUS       DATIHC010000401         2781 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19782, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000401 DATIHC010000000
VERSION     DATIHC010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2781
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19782"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..572)
                     /locus_tag="VLF16_06435"
     CDS             complement(<1..572)
                     /locus_tag="VLF16_06435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003298133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HSX70552.1"
                     /translation="MKEQYTSALDWLRQHPELYSLICLCLLALAAWTSNWIVKRILLR
                     GLFRALASTALGQDQTFRDIQVVSRLANVVPALVLSAGIGLVPHLPEAVVTVVRNVCA
                     AFVVFTVALAIGSVLTLVNTLYQRRPDAHLKPIKGYLQVVKIVIYLVATILIVAALID
                     RSPLILLSGLGAMAAVLMLIFQDTLLSLVA"
     gene            complement(660..1481)
                     /locus_tag="VLF16_06440"
     CDS             complement(660..1481)
                     /locus_tag="VLF16_06440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HSX70553.1"
                     /translation="MRLTSLFILLCLALPAHAEGFITRLLNKPVPGGVAVLDLGDGPT
                     APQARYQGKPVLVVKEDGKRWIAIVGIPLTVKPGAQKLEADGQALSFQVGGKHYREQR
                     ITLKNKQQVNPNAKNLARIERELAEQTAAYRQFSPRQPSNLLLDKPVSGPLSSPFGLR
                     RFFNGEERNPHSGLDFAVPSGTPIKAPAAGKVILIGDYFFNGKTVFVDHGQGLISMFC
                     HLSKVEVQLGQELPRGGVLGRVGATGRATGPHLHWNVSLNDARVDPAIFIGAFSR"
     gene            complement(1501..>2781)
                     /gene="xseA"
                     /locus_tag="VLF16_06445"
     CDS             complement(1501..>2781)
                     /gene="xseA"
                     /locus_tag="VLF16_06445"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HSX70554.1"
                     /translation="AQVWVEGEISNLAKPASGHLYFTLKDNQAQVRCALFRQNAARVR
                     QALRDGLAVKVRGKVSLFEGRGDYQLILDSVEPAGDGALRLAFEALKEKLSAEGLFAA
                     ERKRALPAHPQRIGIVSSPTGAVIRDIISVFRRRAPQVALTLIPTAVQGREATAQIVR
                     GLQLADRAGFDAIILARGGGSLEDLWCFNEEAVARAVAACVTPIVSAVGHETDVSISD
                     FVADVRAPTPSAAAELLAPDGADLQRRLDALTRRLALTLQTRLAREQLRLEGLTRRLR
                     HPGERLRQQAQRLDDLDMRLRRAFTQQSTSRHERLARLEGRLNAQHPGRALALLRQRL
                     DSLAERLPRATQARLREQRQRLQGLAQTLNIVSPLATLGRGYSILLDDRGQAVRSASQ
                     THPGQRLKARLAEGELDVRVEDNHLEPVTLSLLD"
BASE COUNT          404 a          892 c         1062 g          423 t
ORIGIN      
        1 ctggccacca gcgacagcag ggtgtcctgg aagatcagca tcagcaccgc ggccatcgcg
       61 ccgaggccgg acagcaggat cagcggcgaa cggtcgatca gcgcggcgac gatgaggatg
      121 gtggcgacca ggtagatcac gatcttgacc acctgcaggt agcccttgat cggcttgagg
      181 tgagcgtcgg gccggcgctg gtagagggtg ttgaccaggg tcagcacgct gccgatcgcc
      241 agcgccacgg tgaacacgac gaaggccgcg cagacgttgc gtaccaccgt gaccaccgcc
      301 tcggggaggt gcggcaccag gccgatgccg gccgacagca ccagcgccgg cactacgttg
      361 gccaggcggc tgacgacctg gatgtccctg aaggtctggt cctggcccag cgcggtgctg
      421 gccagggcgc ggaacagccc gcgcaggagg atgcgcttga cgatccagtt ggaggtccag
      481 gcggccaggg ccaacaggca caggcagatc aggctgtaca gttcgggatg ctggcgcagc
      541 cagtccaggg cggaggtgta ctgctccttc atgcgggggc ctcgcggttg atgcttagct
      601 ccctacctta acagccgaag cgctggcggc gggccgcgaa gtgcttcgga atctgtcgct
      661 cagcgcgaga atgcgccgat gaagatcgcc gggtcgacgc gggcgtcgtt gaggctgacg
      721 ttccagtgca gatgcggtcc ggtggcgcgc ccggtggcgc cgacccggcc gagcacgccg
      781 ccgcgcggca gctcctggcc cagctgcacc tcgaccttgg acaggtggca gaacatgctg
      841 atcaggccct ggccgtggtc gacgaacacc gtcttgccgt tgaagaagta gtcgccgatc
      901 aggatcacct tgccggccgc cggcgccttg atcggcgtgc cgctgggcac ggcgaagtcc
      961 agcccggagt gcgggttgcg ctcctcgccg ttgaagaagc ggcgcaggcc gaacggcgaa
     1021 gacagcgggc cgctcaccgg cttgtccagc aacaggttgc tcggctggcg cgggctgaac
     1081 tggcggtagg cggcggtctg ctcggccagc tcgcgttcga tgcgcgccag gttcttcgcg
     1141 ttcgggttga cctgctgctt gttcttcagg gtgatgcgtt gctcgcgata gtgcttgcca
     1201 ccgacctgga agctcagcgc ctgaccatcg gcctcgagct tctgggcgcc gggcttgacc
     1261 gtcagcggga tgccgacaat ggcgatccag cgcttgccgt cttccttcac caccagcacc
     1321 ggcttgccct ggtagcgcgc ctgcggcgcg gtggggccgt cgccgaggtc gagcacggct
     1381 acgccgccgg gcaccggttt gttcagcagg cgggtgatga agccttcggc gtgagcgggc
     1441 agggcgaggc agagcagaat gaagaggctt gtgaggcgca tgggctatcc ctgtggcggt
     1501 tcagtcgagc agcgacaggg tcaccggctc cagatggttg tcttcgaccc gcacgtccag
     1561 ttcgccctcg gccaggcggg ccttgagcct ctgccccggg tgggtctgac tggcgctgcg
     1621 cacggcctgg ccgcggtcgt cgaggagaat gctgtagccg cggccgagag tagccagcgg
     1681 gctgacgatg ttcagggtct gcgccaggcc ctgtaggcgc tgccgctgct cgcgcagacg
     1741 ggcctgggtg gcacgcggca ggcgctcggc caggctgtcc aggcgctggc gcagcagcgc
     1801 cagggcgcgg ccgggatgct gggcgttgag ccggccttcc aggcgcgcca ggcgctcgtg
     1861 gcggctggtg gactgctggg tgaaggcgcg gcgcaggcgc atgtccagat cgtccagccg
     1921 ctgggcctgc tggcgcagac gctcgccggg gtggcgcagg cgccgggtca ggccttccag
     1981 gcgcagctgc tcgcgggcca ggcgggtctg cagggtcagc gccaggcgcc gggtcagggc
     2041 atccaggcgg cgctgcaggt cggcgccgtc cggggccagc agttcggcgg cggcggaggg
     2101 cgtcggcgcg cgtacgtcgg ccacgaagtc gctgatcgac acgtcggtct cgtgccctac
     2161 ggcgctgacg atgggcgtga cgcaggcggc cacggcgcgg gccaccgcct cctcattgaa
     2221 gcaccagagg tcttccaaag agccgccgcc gcgggccagg atgatcgcgt cgaagccggc
     2281 gcggtcggcc agctgcaggc cgcggacgat ctgcgcggtg gcttcgcggc cctgcacggc
     2341 ggtgggaatc agggtcagcg ccacctgcgg ggcgcggcgg cggaacacgc tgatgatgtc
     2401 gcggatcacc gcgccggtcg gtgagctgac gatgccgatg cgctgcgggt gagcaggcag
     2461 ggcgcgcttg cgctcggcgg cgaacaggcc ctcggcggag agtttttcct tgagcgcctc
     2521 gaaggccagg cgcagggcgc cgtcgccggc cggctccacc gagtcgagga tcagttgata
     2581 gtcgccgcgg ccctcgaaca gcgagacctt gccgcgcacc ttcaccgcca ggccgtcgcg
     2641 cagggcttgg cgcacgcggg cggcgttctg ccggaacagc gcgcagcgca cctgggcctg
     2701 gttgtccttg agggtgaagt agaggtggcc ggaggcgggc ttggcgaggt tggagatctc
     2761 gccctcgacc cagacctggg c
//
LOCUS       DATIHC010000402         4369 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43136, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000402 DATIHC010000000
VERSION     DATIHC010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4369)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4369)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4369
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43136"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..868)
                     /locus_tag="VLF16_06450"
     CDS             complement(<1..868)
                     /locus_tag="VLF16_06450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSX70555.1"
                     /translation="MSVLFSLLRSRLLRPVFIALGLAMLAQVGLAVWLTRATVDGLVS
                     DLTQRLGGESQRLAGELGSAEEEMRAGLAALSSNTRERLSSGLSGQLKSEQAQLRKVL
                     EENLKQSGNSMAQLLAGVAPKAIWDNDTPALTALTRIVQRDPAVLFAVFYDAQGQRLT
                     RNFNRSSPRVRELVAAGQGDGALAKLVDAASRDPKVYIIETDINPMGASIGKVQLGMS
                     LDGVEQELTALDARFATLVGSAGELVDQSLSGAAQESTQALQQRLQLAEQATADMARN
                     GSETVRQAADSLR"
     gene            complement(1007..2449)
                     /locus_tag="VLF16_06455"
     CDS             complement(1007..2449)
                     /locus_tag="VLF16_06455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013713830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family outer membrane protein"
                     /protein_id="HSX70556.1"
                     /translation="MLRRLSLALAVAAATTGMAWAEEAPLATKTDLVTVYNEAVKNNA
                     DLAAARANYEAISEVVPQARAGLLPNLSAGADAMNTDSDVDTRAGEVSASRSGLSYRA
                     SLSQPLFRADRWFQFQAAKATDQQYALQLSATEQNLILQSAETYFAVLRAQDTLASTK
                     AEESAFKRQLDQANERFDVGLSDKTDVLEAQAGYDTARANRILAERAVDDAFQALVTL
                     TNHEYASIEGIVHSLPVLVPTPNDAKAWVDTAAQQNLNLQASNYAVDAAEETLRQRKS
                     GHAPTLDAVAQYEKGDNDSLGFTNNDLASPYDGDAEQTSIGLQLNIPIYSGGLTSSQV
                     REAYYRLTQSEQERESLRRQVVENTRNLHRAVNTDVETVQARRQSIISNQSALEATEI
                     GYQVGTRNIVDVLDAQRQLYSSVRNYNDARYDYILNNLRLKQAAGTLAPTDLEALSSF
                     LKPDYDPDKDFLPQDLAKAAEARLQSNPDY"
     regulatory      2669..2775
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            2858..>4369
                     /gene="thiC"
                     /locus_tag="VLF16_06460"
     CDS             2858..>4369
                     /gene="thiC"
                     /locus_tag="VLF16_06460"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HSX70557.1"
                     /translation="MSVKQQKNLSESAQVDQQSIQPFPRSQKIYVQGSRPDIRVPMRE
                     ISLDVTPTAFGGEINAPVTVYDTSGPYTDPSVTIDVRQGLTDVRSAWIEDRGDTEKLP
                     GLSSEFGQRRLNDAELSAMRFAHVRNPRRAKAGANVSQMHYAKKGIITPEMEYVAIRE
                     NMKLTEAREAGLLKEQHAGHSFGASIPKEITPEFVRSEIARGRAIIPANINHVELEPM
                     IIGRNFLVKINGNIGNSALGSSIEEEVAKLTWGIRWGSDTVMDLSTGKHIHETREWII
                     RNSPVPIGTVPVYQALEKVGGIAEDLTWELFRDTLIEQAEQGVDYFTIHAGVLLRYVP
                     LTAKRVTGIVSRGGSIMAKWCLAHHQENFLYTHFEEICEIMKAYDVSFSLGDGLRPGS
                     IADANDAAQFGELETLGELTKIAWKHDVQTMIEGPGHVPMQLIKENMDKQLECCDEAP
                     FYTLGPLTTDIAPGYDHITSGIGAAMIGWYGTAMLCYVTPKEHLGLPDKDDVKD"
BASE COUNT          727 a         1409 c         1488 g          745 t
ORIGIN      
        1 agcgcaggct gtcggcggcc tgccgcacgg tctcgctgcc gttgcgcgcc atgtcggcgg
       61 tggcctgctc ggccagctgc aggcgctgct gcagggcctg ggtactttcc tgggccgcgc
      121 cggaaaggct ctggtcgacc agttcaccgg cgctgccgac caaggtggcg aagcgggcgt
      181 ccagcgcggt cagttcctgc tccaccccgt ccagcgacat gccgagctgg accttgccga
      241 tggacgcccc catcggattg atgtccgtct cgatgatgta caccttcggg tcgcgcgagg
      301 cggcgtcgac cagcttggcc agcgcgccat cgccctgccc ggccgccacc agctcgcgca
      361 cccgcgggct gctgcggttg aagttgcggg tcaggcgctg gccctgggcg tcgtagaaca
      421 cagcgaagag caccgccgga tcacgctgga cgatgcgggt gagtgcggtc agggcgggcg
      481 tgtcgttgtc ccagatggcc ttgggcgcga cgccggcgag cagctgggcc atggagttgc
      541 cggactgctt gagattttcc tcgagcacct tgcgcagctg cgcctgctcg ctcttgagct
      601 gaccggagag gccgctggag aggcgttcgc gggtattgct ggagagcgcg gccaggccgg
      661 cgcgcatctc ctcttcggca ctgcccagtt cgccggccag acgctggctc tcgccaccca
      721 ggcgctgggt cagatcgctg accaggccat cgacggtggc gcgggtcagc cagaccgcga
      781 ggccgacctg ggccagcatg gccaggccga gggcgatgaa gacgggacgc agcaggcggc
      841 tgcgcaacag cgagaacaga acggacacag cggaactcct tccggtcagg cgacccgatg
      901 acagcgcatc ggccgcattc ggcaaagctg aagccaagca aggtataggc caaatgccag
      961 catagaaaaa gccccgcatg ggcggggctt tttcgcgaga accgaatcag tagtccgggt
     1021 tgctctgcag tcgggcttcg gcggccttgg ccaggtcctg cgggaggaag tccttgtccg
     1081 ggtcgtagtc cggcttgagg aagctggaca gcgcttccag gtcggtcggc gccagggtgc
     1141 cggcggcctg cttcaggcgc aggttgttga ggatgtagtc gtagcgcgcg tcgttgtagt
     1201 tgcgcaccga gctgtacagc tgacgctggg cgtcgagcac gtcgacgatg ttgcgggtgc
     1261 cgacctgata gccgatctcg gtggcctcca gcgcgctctg gttggagatg atcgactggc
     1321 ggcgggcctg cacggtttcc acatcggtgt tcaccgcgcg gtgcaggttg cgggtgttct
     1381 ccaccacctg acggcgcagg ctctcgcgct cctgctcgct ctgggtcaga cgatagtagg
     1441 cctcgcgcac ctgggagctg gtcaggccgc cgctatagat cgggatgttg agctgcaggc
     1501 caatgctggt ctgttcggcg tcgccgtcat agggcgaggc caggtcgttg ttggtgaaac
     1561 cgagggaatc gttgtcgccc ttttcatact gggccacggc gtccagggtc ggcgcgtggc
     1621 cggacttgcg ctgacgcagg gtctcttcgg cggcatcgac cgcgtagttg ctggcctgca
     1681 ggttgaggtt ctgctgggcc gcggtgtcga cccaggcctt ggcgtcgttc ggcgtgggca
     1741 ccagcaccgg caggctgtgc acgatgccct cgatggaggc gtactcgtga ttggtcaggg
     1801 tgaccagcgc ctggaaggcg tcatccaccg cgcgctcggc gaggatgcgg ttggcgcggg
     1861 cggtgtcgta gccggcctgg gcctcgagca cgtcggtctt gtccgacagg cccacgtcga
     1921 agcgctcgtt ggcctggtcc agctggcgct tgaacgccga ctcttcggcc ttggtcgagg
     1981 ccagcgtgtc ctgggcgcgg agcaccgcga agtaggtctc ggcgctctgc aggatcaggt
     2041 tctgctcggt ggcggagagc tgcagggcgt actgctggtc ggtggccttg gccgcctgga
     2101 actggaacca gcggtcggcg cggaacagcg gctggctcag gctggcgcgg taggacaggc
     2161 cgctgcgcga ggcgctgacc tcgccggcgc gggtgtccac gtcgctgtcg gtgttcatcg
     2221 catcggcacc ggccgagaga ttcggcagca ggccggcgcg ggcctggggt accacttcgc
     2281 tgatcgcctc gtagttggcg cgggcggccg ccagatcggc gttgttcttc accgcctcgt
     2341 tgtagacggt gaccagatcg gtcttggtcg ccaggggggc ttcttctgcc caggccattc
     2401 cagtggtggc agcagctact gcgagcgcca gagagagtct gcgtagcatg atcagtccta
     2461 gatgcagggg aatcgggcaa ggctaaggct gccgcaggca gcggtcaagg cggcggcagc
     2521 gctgcggcgg ggccgttttc gacaagcatt gttgcggggc cgcaacaatg ccagtgccgc
     2581 ctcgctcggc cccggacatt cccgacgaaa cgccacctgc cgccggcctg tgggttggtg
     2641 ttcccgcgtg cccttgatta gactgcggca gttcttgtcg gggtgcccag agtcgtgggc
     2701 tgagatcgga tagttccgga tcccgttgaa cctgatcagg ttaaggcctg cgtagggaac
     2761 aagatgtcct cgccatcgcg gcgagtccct ctcgcaccac ccgtggtgcg cctttcgcca
     2821 tcaggttcgc tccgacatcc agccaggagc cgagccgatg agcgtcaaac aacaaaagaa
     2881 tcttagtgag agcgcccagg tcgaccagca gtcgatccag ccctttcccc gttcgcagaa
     2941 gatttacgta cagggttcgc gcccggacat ccgcgtgccg atgcgcgaga tcagcctgga
     3001 cgtgacgccc accgccttcg gcggcgagat caacgccccg gtcaccgtct acgacacctc
     3061 cggcccctac accgacccga gcgtgaccat cgacgtgcgc cagggcctga ccgacgtgcg
     3121 cagcgcctgg atcgaggacc gcggcgatac cgagaagctg ccgggcctgt cctccgagtt
     3181 tggccagcgc cgtctgaacg acgcggagct ttccgcgatg cgcttcgccc acgtgcgcaa
     3241 cccgcgccgg gccaaggctg gcgccaacgt cagccagatg cactacgcga agaagggcat
     3301 catcacgccc gagatggaat acgtggccat ccgcgagaac atgaagctaa ctgaggcccg
     3361 cgaagccggc ctgctcaagg agcagcacgc cgggcacagc ttcggtgcat ccattccgaa
     3421 ggagatcact cccgagttcg tccgcagcga aatcgcccgc ggccgcgcca tcatccccgc
     3481 caacatcaac cacgtggagc tggagccgat gatcatcggc cgcaacttcc tggtgaagat
     3541 caacggcaac atcggcaact cggcgctggg ctcttccatc gaggaagaag tcgccaagct
     3601 gacctggggc atccgttggg gctccgacac ggtcatggac ctgtccaccg gcaagcacat
     3661 ccacgagacc cgtgagtgga tcatccgcaa ctcgccggta ccgatcggca ccgtgccggt
     3721 ctaccaggcg ctggagaagg tcggcggcat cgccgaggac ctgacctggg agctgttccg
     3781 cgacaccctg atcgagcagg ccgaacaagg cgtggactac ttcaccatcc acgccggcgt
     3841 gctgctgcgc tacgtaccgc tgaccgccaa gcgggtcacc ggcatcgtca gccgtggcgg
     3901 ctcgatcatg gccaagtggt gcctggcgca tcaccaggag aatttcctct atacccactt
     3961 cgaggaaatc tgcgaaatca tgaaggccta cgacgtcagc ttctcgctgg gcgacggcct
     4021 gcgtccgggc tccatcgccg acgccaacga tgccgcccag ttcggtgagc tggagaccct
     4081 cggcgagctg accaagatcg cctggaagca cgacgtgcag accatgatcg agggccccgg
     4141 ccacgtgccg atgcagttga tcaaggagaa catggacaag cagctggaat gctgcgacga
     4201 ggcgccgttc tacaccctcg gcccgctgac caccgacatc gcccccggct acgaccacat
     4261 caccagcggc atcggcgccg cgatgatcgg ctggtacggc acggcgatgc tctgctacgt
     4321 gacccccaag gagcacctgg gccttcccga caaggacgac gtcaaggac
//
LOCUS       DATIHC010000403         2211 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12711, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000403 DATIHC010000000
VERSION     DATIHC010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2211)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2211)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2211
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12711"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..731
                     /locus_tag="VLF16_06465"
     CDS             <1..731
                     /locus_tag="VLF16_06465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002554465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="potassium transporter TrkG"
                     /protein_id="HSX70558.1"
                     /translation="VVVMICGSLPFVLYVSTLRGNFRALVRDDQVRGFILVLVGSWLV
                     LATWYTLTTQLHWLEALRHVAVNTTSIMTTTGFALGDYSLWGGFSTMLFFYLGFVGGC
                     SGSTAGGLKVFRFQVAFILLKANLMQLVHPRAVIKQQYNRHRLDEDIVRSILAFSFFF
                     TITIAALALALSLCGLDWITALSGAASIVSGVGPGMGPIIGPAGNFSSLPDTAKWLLS
                     AGMLLGRLEILTVLVLLLPAFWRH"
     gene            complement(894..1895)
                     /locus_tag="VLF16_06470"
     CDS             complement(894..1895)
                     /locus_tag="VLF16_06470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003212986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSX70559.1"
                     /translation="MSERTTSSSWASGIVQALELGGVDCRALFERLGLDYRALDDPDA
                     RFPQDAMTRLWHLAVETSGDPAIGLNMARVVRPSSFHVVGYALMSSRNLLEGFNRLVR
                     YQRIIAEGSDLSLRPLPEGYELILAIHGDRLPPARQSAEASLAYSLAFCRWLTGKPIT
                     PLRVSFQGPPPASLEPYQQAFQAPLKFNAEHYSLLYARADLEAPLPTANEALAQLHDR
                     FAGEYLARFSESRVTHQVRQVLCRLLPQGEPKREAVAQALLLSERTLQRRLQEEGTSY
                     QHLLDDTRRELAEQYLAQPNLTLLEIAYLLGFADPSNFFRAFRRWFDATPGEYRARL"
     gene            1992..>2211
                     /locus_tag="VLF16_06475"
     CDS             1992..>2211
                     /locus_tag="VLF16_06475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70560.1"
                     /translation="MSRPAPGFGAGHLALGFGKTAQAVRGIIMIGSDDELQAAEDRNA
                     QQTTEAEVATKPADEEILADDVLADIAPV"
BASE COUNT          338 a          742 c          759 g          372 t
ORIGIN      
        1 cggtggtggt gatgatctgc ggcagcctgc cgttcgtgct ctatgtttcg accctgcgcg
       61 gcaacttccg cgcgctggtg cgcgacgacc aggtgcgcgg cttcatcctg gtactggtcg
      121 gcagctggct ggtgctggcc acctggtaca ccctgaccac ccagctgcac tggctggaag
      181 ccctgcgcca cgtggcggtg aacaccacct cgatcatgac caccaccggc ttcgccctcg
      241 gcgactacag cctgtggggc ggattctcga ccatgctgtt cttctacctg ggcttcgtcg
      301 gcggctgctc cggctccacc gccggtggcc tcaaggtgtt ccgcttccag gtcgccttca
      361 tcctgctcaa ggccaacctg atgcagctgg tgcacccgcg cgcggtgatc aagcagcagt
      421 acaaccgcca ccgtctggac gaggacatcg tccgctcgat cctggcgttt tccttcttct
      481 tcaccatcac catcgccgct ctggcgctgg ccctgagcct gtgcgggctg gactggatca
      541 ccgcgctgtc cggcgcggcc agcatcgtct ccggcgtggg cccgggcatg ggtccgatca
      601 ttggcccggc cggcaacttc tccagcctgc cggatacggc caagtggctg ctgagcgccg
      661 gcatgctgct gggcaggctg gaaatcctca cagtactggt actgctgctc cccgccttct
      721 ggcgccacta acgcgcagcg tggccaagct actgcgcggc ccgctggcgt cgttgcgtcc
      781 tcgctcaagg ctcgcctagc aggcgctatg tctcgccttt cgctgcgggg cgcctagcca
      841 gcaggccgct cgctacgctt ggccacgctg cgcacaccga gctgccggcg agttcacaac
      901 cgcgcgcggt actcgcccgg cgtggcatcg aaccagcggc ggaaggcgcg gaagaagttg
      961 ctggggtcgg cgaagccgag caggtaggcg atttccagca gggtcagatt gggctgggcc
     1021 aggtactgtt cggccagctc gcggcgggtg tcgtcgagca ggtgctgata gctggtgccc
     1081 tcctcctgca ggcggcgctg cagggtgcgt tcggacagca gcagggcctg ggccaccgcc
     1141 tcgcgcttgg gttcgccctg gggcagcagg cggcacagca cctggcgcac ctggtgggtg
     1201 acgcggctct cggagaagcg cgccaggtac tctccggcga aacggtcgtg cagctgcgcc
     1261 agcgcctcgt tggccgtggg cagaggcgcc tccaggtcgg cgcgggcgta gagcagcgaa
     1321 tagtgttcgg cgttgaattt cagcggagcc tggaaggcct gctggtaagg ctccaggctc
     1381 gccggcggcg gcccctggaa gctcacccgc agcggcgtga tcggctttcc ggtgagccag
     1441 cggcagaagg ccagggaata ggccagcgac gcctcggcgc tctgccgtgc cggcggcagg
     1501 cggtcgccgt ggatcgccag gatcagctcg tagccttccg gcagcggccg caggctgagg
     1561 tcggagccct cggcgatgat gcgctggtag cgcaccaggc gattgaagcc ttccagcagg
     1621 ttgcggctgg acatcagcgc gtagcccacc acgtggaagg acgaaggccg caccacgcgc
     1681 gccatgttca ggccgatggc cggatcgccc gacgtctcca ccgccaggtg ccacaggcgg
     1741 gtcatggcgt cctgcgggaa gcgtgcgtcc ggatcgtcga gggcgcggta gtcgaggccc
     1801 agtcgctcga acagcgcccg gcagtcgacg ccgcccagct ccaatgcctg gacgatgccg
     1861 gaagcccagc tggaggaagt ggtacgttcg ctcatcggct ttttttgttc tatgaatcgc
     1921 gcgggttggc ggcgcaagga tactaatccg ccccggcaat tgacagcgcc ggccccgagc
     1981 gtgccgcggc catgagccga ccggcgcccg gtttcggcgc aggccatttg gcgctaggat
     2041 tcggcaaaac agcacaggca gtacggggca tcatcatgat cggatcggac gacgagctgc
     2101 aggcagccga agaccgcaac gcacagcaga ccacggaggc ggaagtcgcc accaagccgg
     2161 cggacgaaga gatcctggcc gacgacgtcc tcgccgatat cgcgcccgtg c
//
LOCUS       DATIHC010000404         4110 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29120, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000404 DATIHC010000000
VERSION     DATIHC010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4110
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29120"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..414)
                     /gene="rplO"
                     /locus_tag="VLF16_06480"
     CDS             complement(<1..414)
                     /gene="rplO"
                     /locus_tag="VLF16_06480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003255461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HSX70561.1"
                     /translation="MQLNDLRSAPGARREKHRPGRGIGSGLGKTGGRGHKGQTSRTGG
                     SIAPGFEGGQQPLHRRLPKFGFVSLKAMDRAEVRTSELAKVEGDVVTLQSLKDANVIN
                     QNVQRVKVMLSGEVGRAVTLKGIAATKGARAAIEAA"
     gene            complement(417..593)
                     /gene="rpmD"
                     /locus_tag="VLF16_06485"
     CDS             complement(417..593)
                     /gene="rpmD"
                     /locus_tag="VLF16_06485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HSX70562.1"
                     /translation="MATVKVTLVKSTNGRLANHKACVKGLGLRRIGHTVEVQDTPENR
                     GMINKAYYLLKVEG"
     gene            complement(596..1123)
                     /gene="rpsE"
                     /locus_tag="VLF16_06490"
     CDS             complement(596..1123)
                     /gene="rpsE"
                     /locus_tag="VLF16_06490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003093697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HSX70563.1"
                     /translation="MANNEQKRDRGNRDDAQSDGYIEKLVQVNRVAKTVKGGRIFTFT
                     ALTVVGDGKGRVGFGRGKSREVPAAIQKAMEAARRNMIQVDLNGTTLQYPMKSVHGAS
                     HVFMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVYATFKGLKAMQSP
                     ESVAAKRGKSVEEIL"
     gene            complement(1127..1477)
                     /gene="rplR"
                     /locus_tag="VLF16_06495"
     CDS             complement(1127..1477)
                     /gene="rplR"
                     /locus_tag="VLF16_06495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HSX70564.1"
                     /translation="MSEKKETRLRRARKARLKMRELETVRLCVYRSSQHIYAQVISAD
                     GAKVLASASTLDKELRDAATGNVDAAKKVGQLVAERAKAAGVTQVAFDRSGFKYHGRV
                     KALADAAREGGLEF"
     gene            complement(1488..2021)
                     /gene="rplF"
                     /locus_tag="VLF16_06500"
     CDS             complement(1488..2021)
                     /gene="rplF"
                     /locus_tag="VLF16_06500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HSX70565.1"
                     /translation="MSRVAKNPVKLPAGVEVKLAGQQLSIKGAKGTLELNVHSSVEVI
                     QDAGELRFAARNGDQQNRAMAGTTRALVNNMVIGVSQGFERKLQLVGVGYKAQAKGQV
                     LNLALGFSHPIDYELPQGVTAETPSQTDILIKGIDKQLVGQVAAEIRDFRRPEPYKGK
                     GVRYSDEVVRRKEAKKK"
     gene            complement(2034..2426)
                     /gene="rpsH"
                     /locus_tag="VLF16_06505"
     CDS             complement(2034..2426)
                     /gene="rpsH"
                     /locus_tag="VLF16_06505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002555475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HSX70566.1"
                     /translation="MSMQDPLADMLTRIRNAQMAEKSVVSMPSSKLKVAVANVLKNEG
                     YIAGYQVSSDAKPQLSIELKYFEGRPVIEEVKRISRPGLRQYKPVDQLPKVRGGLGVS
                     IVSTNKGVMTDRAARAAGVGGEVLCTVF"
     gene            complement(2599..2904)
                     /gene="rpsN"
                     /locus_tag="VLF16_06510"
     CDS             complement(2599..2904)
                     /gene="rpsN"
                     /locus_tag="VLF16_06510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003400428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HSX70567.1"
                     /translation="MAKESMKNRELKRQRLVAKFSKKRAELKAVIANPNSTPEQRWEA
                     QIALQKQPRDASASRLRNRCRITGRPHGVYRKFGLARNKLREAAMRGDVPGLVKASW"
     gene            complement(2917..3456)
                     /gene="rplE"
                     /locus_tag="VLF16_06515"
     CDS             complement(2917..3456)
                     /gene="rplE"
                     /locus_tag="VLF16_06515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HSX70568.1"
                     /translation="MARLKEIYRKEIAPKLKEELKLANVMEVPRVTKITLNMGLGEAI
                     GDKKIIENAVADLEKITGQKPVVTFARKSIAGFKVREGWPIGVKVTLRRDRMYEFLDR
                     LLSISLPRVRDFRGLNAKSFDGRGNYSMGVKEQIIFPEIDYDKIDALRGLDITLTTTA
                     RTDDEGRALLRAFNFPFRN"
     gene            complement(3476..3790)
                     /gene="rplX"
                     /locus_tag="VLF16_06520"
     CDS             complement(3476..3790)
                     /gene="rplX"
                     /locus_tag="VLF16_06520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HSX70569.1"
                     /translation="MQKIRRDDEIIVIAGKDKGKRGKVLKVLADDRLIVGGINLVKRH
                     TKPNPMLGVQGGIVEKEAPLHVSNVAIFNSETNKADRVGFKVEDGKKIRVFKSTQKPV
                     GA"
     gene            complement(3803..>4110)
                     /gene="rplN"
                     /locus_tag="VLF16_06525"
     CDS             complement(3803..>4110)
                     /gene="rplN"
                     /locus_tag="VLF16_06525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012728338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HSX70570.1"
                     /translation="IKVLGGSHRRYAGIGDIIKVTVKEAIPRGKVKKGQVMTAVVVRT
                     KHGVRRADGSIIRFDGNAAVLLNNKQEPIGTRIFGPVTRELRSEKFMKIVSLAPEVL"
BASE COUNT          774 a         1235 c         1192 g          909 t
ORIGIN      
        1 agctgcttcg atagccgcac gcgcaccctt ggtggcggcg atacctttca gggtgaccgc
       61 gcgaccaacc tcgccggaca gcatgacttt cacacgctgc acgttctggt tgattacgtt
      121 ggcatccttc agcgactgca gggtgacgac gtcgccttcc accttggcca gctcggaagt
      181 gcgcacttca gcgcgatcca tggccttcag ggagacgaag ccgaacttcg gcagacggcg
      241 gtgcagcggt tgctgaccac cctcgaagcc cggagcgatg gaaccgccgg tacgggaggt
      301 ctgacccttg tggccacggc caccggtctt gcccagaccg ctaccgatac cacggcccgg
      361 acggtgcttt tcgcgacggg cacccggcgc ggaacgcaga tcgttcagtt gcatgattaa
      421 ccctccacct tcagcaggta gtaagccttg ttgatcatgc cgcggttttc aggagtgtcc
      481 tgaacttcga cggtgtgacc gatgcggcgc aggcccaggc ccttgacgca agctttgtgg
      541 ttggccagac ggccgttggt gctcttgacc agagtgactt ttacggtagc catgatcaga
      601 gaatctcctc gacgctctta ccacgcttgg cagccacgga ttccggggac tgcatggcct
      661 tcagaccctt gaaggtggcg tacaccacgt tcaccgggtt ggtagagccg tagcacttgg
      721 ccagaacgtt ctgcacgcca gccacttcca gcacggcacg catggcgccg ccggcgatga
      781 tgccggtacc ttcggaagcc ggttgcatga acacgtggga cgcgccatgg acggacttca
      841 tcgggtattg cagagtggtt ccgttcaggt cgacctggat catgttgcga cgcgcagctt
      901 ccatcgcctt ctggatggcg gccggcactt cgcgggactt gccgcgaccg aaaccgacgc
      961 ggcccttgcc atcacccacc acggtcagcg cggtgaaggt gaagatacgg ccacccttta
     1021 cggttttggc aacacggtta acctgtacca gcttctcgat gtagccatcg ctctgggcat
     1081 cgtcacggtt accgcgatcg cgcttttgct cgttatttgc cataacttag aactccagcc
     1141 cgccttcacg agcagcatca gccagcgctt tcacacggcc gtggtacttg aagccagaac
     1201 ggtcgaacgc cacctgggta acgccagcgg ctttcgcgcg ctcggcaacc agctgaccga
     1261 ctttcttggc cgcgtcgacg ttgccggtgg cggcgtcacg cagttctttg tccagggtcg
     1321 aggcactggc cagaaccttg gcgccgtcgg ccgaaatgac ctgggcgtag atgtgctggg
     1381 aagagcggta cacgcagagg cgtacggttt ccagctcgcg cattttcagg cgtgccttgc
     1441 gagcgcgacg cagacgagtt tctttctttt cgctcatttg ctatgcccta cttcttctta
     1501 gcttctttgc gacgtacgac ttcgtcggaa taacgcacgc ctttgccttt gtacggctca
     1561 ggacgacgga agtcgcggat ctccgcagcc acctgaccaa ccagctgctt gtcgatgccc
     1621 ttgatcagga tatcggtctg gctcggggtc tcggcagtaa caccctgcgg gagttcgtag
     1681 tcgatcggat gggagaagcc cagcgcgagg ttcaggacct ggcctttggc ctgggccttg
     1741 taacccacgc cgaccagctg cagcttgcgc tcgaagcctt ggctcacgcc aatgaccatg
     1801 ttgttgacca gtgcacgggt ggtaccggcc atggcacggt tctgctgatc gccattgcgg
     1861 gcggcaaaac gcagctcacc ggcgtcctgg ataacttcca cggacgagtg cacattcagt
     1921 tccagggtgc ctttggcgcc cttgatcgaa agctgctggc cagcgagttt gacctcgaca
     1981 cctgccggca gcttgacggg gttcttagca acgcgagaca tgcttatccc cccttagaac
     2041 acggtgcaga gcacttcacc gccgacaccg gcagcgcgtg cagcgcgatc cgtcatcaca
     2101 cccttattgg tggagacgat ggaaacgccc agaccgccgc gtactttcgg cagctgatcg
     2161 acaggcttgt actggcgcag accaggacgg ctgatgcgct tcacttcctc gatgaccgga
     2221 cgaccttcga agtacttcag ctcgatggac agctgcggct tggcgtcgct gctgacctgg
     2281 tatcccgcga tgtaaccttc gttcttcaga acgttggcta ctgccacctt cagcttggaa
     2341 gacggcatgc ttactaccga cttttcagcc atctgggcat tacggatacg agttagcatg
     2401 tccgctaacg ggtcctgcat actcatgggc tagatgctcc tgatacaaaa agaacagcct
     2461 ttcggctgga accatccacg agctcggcaa atgccaggct caggagagcc ggacattcta
     2521 gagatcgatc aaaaatgaat caagccccaa aaggggcttg atcgataaaa caaagccggc
     2581 actaggccgg cttcgttttt accagctggc tttcaccagg cccggtacgt caccacgcat
     2641 ggcggcttcg cgcagcttgt tacgcgcaag accgaacttg cggtacacgc catgcgggcg
     2701 gccggtgatg cggcaacggt tacgcaggcg gctggcgctg gcgtcacgcg gttgcttctg
     2761 cagggcgatc tgagcttccc aacgctgctc cggagtggag ttcgggttgg caatcacagc
     2821 cttgagctct gcacgcttct tggagaactt ggcgaccaag cgctgacgct tgagctcgcg
     2881 gttcttcatg ctctctttgg ccatttccta ctccaatcag ttgcggaacg ggaagttgaa
     2941 ggcgcgcagc agggcgcgac cttcatcgtc cgtacgggcg gtggtggtca gggtgatgtc
     3001 cagaccacgc agagcatcga tcttgtcgta atcgatttcc gggaaaatga tctgctcttt
     3061 cacacccatg ctgtagttgc cgcgaccatc gaaggatttg gcattcagac cgcggaagtc
     3121 acgcacgcgc ggcagggaaa tggagagcag gcgatccagg aattcgtaca tgcgatcgcg
     3181 gcgcagggtc accttgacac cgatcggcca gccttcacga accttgaaac ctgcaatgga
     3241 cttgcgggcg aaggtcacga cgggcttctg accggtgatc ttttccaggt cggcaacggc
     3301 gttttcgatg atcttcttgt caccgatcgc ttcgccaaga cccatgttca gggtgatttt
     3361 ggtaacgcgc ggaacttcca tcacgttggc cagcttcagc tcttccttca gcttgggcgc
     3421 gatttctttc cggtaaatct ctttcagtcg tgccatggtg ttttacctat gattctcaag
     3481 cgccaaccgg cttttgggtg gacttgaaga cacgaatttt tttgccgtct tcgaccttga
     3541 agccaacgcg gtctgccttg ttggtttcgc tgttgaagat ggcgacgttg gacacgtgca
     3601 ggggcgcctc tttctcgacg ataccgccct gaacaccgag catcgggttc ggcttggtat
     3661 gacgcttgac gaggttgatg ccgccgacga tcagacgatc gtcagccagc actttcagca
     3721 ccttgccgcg cttgcccttg tctttgccgg cgatgacgat gatctcgtcg tcacgacgaa
     3781 tcttttgcat gacggcttct ccttacagca cttcgggggc gagcgagacg atcttcatga
     3841 acttctcgga acgcagttca cgagtcaccg gcccgaagat acgggtgccg atcggctctt
     3901 gcttgttgtt cagcagaaca gcggcgttgc cgtcgaagcg gatgatcgag ccgtcagcac
     3961 ggcgtacgcc gtgcttggtg cggaccacga cagcggtcat cacctggcct ttcttcactt
     4021 tgccgcgcgg aatcgcttcc ttcacggtga ccttgatgat gtcgccgata ccggcataac
     4081 gacggtgcga accaccaagg accttgatgc
//
LOCUS       DATIHC010000405         1871 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10472, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000405 DATIHC010000000
VERSION     DATIHC010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1871)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1871)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1871
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10472"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(48..932)
                     /locus_tag="VLF16_06530"
     CDS             complement(48..932)
                     /locus_tag="VLF16_06530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HSX70571.1"
                     /translation="MSRLMCMLAALLLAQPLAAQTLERIRSSNGLNLGYLADLAPFSS
                     EQGERPAGYGIELCQRVAEGVKRELGLAELQVRYRLLAHDEVLEALQTGRVDLLCSGL
                     AETLGRRESLNFSLPIYPAGRGVVVRSDASPSLVAALNGQARQSGPQWRAAINRGLTR
                     QRFAVIGDSVTEHWVRDKLRLSGVQASVMPVSGFAEGVAVVAEDKADAFFADRVVLQN
                     QVALSHAASDLQVLDRLFDLEPFALAMARGDDDFRLLVDRELSKVYRTGEIEPLYRRY
                     FGEPSAQVRLLFQAYSRP"
     gene            complement(929..>1871)
                     /gene="potE"
                     /locus_tag="VLF16_06535"
     CDS             complement(929..>1871)
                     /gene="potE"
                     /locus_tag="VLF16_06535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003458353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015496 - putrescine:ornithine antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0015822 - ornithine transport [Evidence
                     IEA];
                     GO_process: GO:0015847 - putrescine transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="putrescine-ornithine antiporter"
                     /protein_id="HSX70572.1"
                     /translation="IWLTSLANFGGPRVTGQIGSVTVWGVIIPVAGLSVIGWFWFDPE
                     IFRQAWNPNGIATSDAIAQSIPLTLWAFLGMESAAQNSDAVENPQRNVPLACLLGTLG
                     AAVIYVLSTSVIMGIVPNAELANSSAPFAFVYAQMFNGWVGDIIMALAVMACVGSLLG
                     WQFTLAQTAKVTAERQMFPRLFARVTLLGAPILGLIANAVLQTGMAVSTISPNASEQF
                     GKLVNLAAVTNIIPYITALSALLIIMQKAGVARAIQYRNMVALALAMAYSFYALYASG
                     TEAVFGGMIVTAVGYLLFGYIADRMLERRQALKGEVQ"
BASE COUNT          332 a          661 c          610 g          268 t
ORIGIN      
        1 gcccggctgc tgatcagcgt gctcggtcag cagcgcgcac cgagccacta aggccgcgag
       61 taggcctgga acaacagccg cacctgcgca ctcggctcgc caaagtacct gcggtacagc
      121 ggctcgatct cgccagtgcg atacaccttg ctcaactcgc ggtccaccag caggcggaag
      181 tcgtcgtcgc cacgggccat ggccagcgcg aacggctcca ggtcgaacag tcgatccagc
      241 acctgcagat cgctggcggc gtgactgagc gcgacctggt tctgcagcac cacgcgatcg
      301 gcgaagaagg cgtcggcctt gtcctcggcc accacggcca ccccttcggc aaagccggaa
      361 accggcatca cactggcttg cacacctgac aggcgcaact tgtcgcgcac ccagtgctct
      421 gtgacgctgt cgccgataac cgcgaagcgc tggcgggtca gcccgcgatt gatggcggcg
      481 cgccattgcg ggccgctctg cctggcctgg ccgttgagcg ccgccaccag actgggcgac
      541 gcgtcgctgc gcaccaccac gccgcgcccg gccggataga tcggcagcga gaagttcagc
      601 gactcgcgcc gccccagagt ctccgccagg ccgctgcaca gcaggtcgac ccgccccgtc
      661 tgcagcgcct ccagcacctc gtcatgggcc agcaaccgat agcgcacctg cagttccgcc
      721 aggccgagtt cgcgcttgac cccttcggcc acccgctggc agagctcgat gccatagcct
      781 gccggccgct caccctgctc cgaggagaac ggcgccaggt cggccaggta gccgagattg
      841 aggccattgc tgctgcggat tcgctccagc gtctgcgccg ccagcggttg cgccagcagc
      901 agcgcggcga gcatgcacat caggcgactc attgcacttc ccccttcagc gcctggcgcc
      961 gctccagcat gcgatcggcg atgtagccga acagcaggta gcccaccgcc gtgacgatca
     1021 tgccgccgaa caccgcctcg gtgcccgagg cgtacagggc gtagaagctg taggccatgg
     1081 ccagcgccag ggcgaccatg ttgcggtact ggatggcccg cgccacgccg gccttctgca
     1141 tgatgatcag cagcgccgag agcgcggtga tgtagggaat gatgttggtc accgcggcca
     1201 ggttgaccag cttgccgaac tgctcggagg cattcggcga gatggtcgac accgccatgc
     1261 cggtctgcag cacggcattg gcgatcagcc cgaggatggg cgcgccgagc agcgtgacgc
     1321 gggcgaacag acgcgggaac atctgccgct cggcggtaac cttggcggtc tgcgccaggg
     1381 tgaactgcca gcccagcagc gagccgacgc aggccatcac cgccagcgcc atgatgatgt
     1441 cgccgaccca gccgttgaac atctgcgcgt agacgaaggc gaacggcgcg ctggagttgg
     1501 ccagctcggc gttcggcacg atgcccatga tcaccgaggt ggacagcacg tagatcaccg
     1561 ccgcgcccag ggtgccgagc aggcaggcca gcggcacgtt gcgctgcggg ttctccaccg
     1621 cgtcggagtt ctgcgccgcc gactccatgc cgaggaaggc ccacagggtc agaggaatgc
     1681 tctgcgcgat ggcgtcgctg gtggcgatgc cgttgggatt ccaggcctgg cggaagatct
     1741 ccgggtcgaa ccagaaccag ccgatcaccg acagcccggc caccgggatg atcacgcccc
     1801 acaccgtcac cgaaccgatc tgcccggtga ccctgggtcc gccgaagttg gccagcgagg
     1861 tcagccagat c
//
LOCUS       DATIHC010000406         2773 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31470, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000406 DATIHC010000000
VERSION     DATIHC010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2773
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31470"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..727)
                     /locus_tag="VLF16_06540"
     CDS             complement(<1..727)
                     /locus_tag="VLF16_06540"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014851334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSX70573.1"
                     /translation="MSDQPLVSVIIASYNHAPYIEAAIESVLSQTYTPIELLVVDDGS
                     TDDSVVRIQALQRAHGFDFRTQANQGLARTLNDCIARSRGSLIAPFGSDDVMLPGRLA
                     TQVAYMRDKPEVGICAGNIAHIDGNGVSLSKRDRERAFRRLDFDAVFCGDQAGAPAPT
                     LLFRREALERVGGFDPSIRLEDLLIELKITQAGYFIDVLPDVLAQYRVHGANTYKNRR
                     FMIETVMATYARFADHPAYPQVCA"
     gene            complement(720..1856)
                     /locus_tag="VLF16_06545"
     CDS             complement(720..1856)
                     /locus_tag="VLF16_06545"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019339919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSX70574.1"
                     /translation="MTRRFKVLQLQNRYNVSAADLAEQIVKALPGERYEVTTAFLRGR
                     PAADEPHSCAPRSVYFGFSQAATKGMRLRVLWTLYRHCRENDYDLVIGHRFKPINLLM
                     LLNRVLRFPACIGVLHGLGEFDRRYRQWVTLGLSTRRWCFVGVSRAVREDLLGSRCGM
                     EPGNTVQINNAIDIERSEALQLDRCEARTRLGLEASALIVGTIGRLVPVKGHIYLLEA
                     FARLRQDFPAAQLVIIGDGRCRAELQASIDQQGLQGRVHLPGTLDDALQYVKAFDIFI
                     MPSLSEGLPLALLEGMSGRLPVMGTSIDSLKPILQDCGGLMFEPADVPSLERQLRNML
                     GQPAEAREAMGRRAYDYLRGSHAVEDFRRHYRELIERMLEHRDV"
     gene            complement(1853..2770)
                     /locus_tag="VLF16_06550"
     CDS             complement(1853..2770)
                     /locus_tag="VLF16_06550"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010488466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HSX70575.1"
                     /translation="MISVVIPTYNYASVLPRAVGSVMAQLSDADAELLVIDDGSTDNT
                     RQVIAELQDLYGDRFTAVHKENGGLASVRNHGIAASRGQYLVFLDADDEMLPGALAAL
                     SLHISQQPHTRMVIAGHHSVAFDGRKFEHPVGQLPATPDARLEAYLFDKTLSLCNGAC
                     AMHREVFSAGVYPERIRNAEDIPVFAQVLARFPCTVLNAPMAAIYKHPTSLRRNLDYA
                     RQTGVELVDEVFSERRMPADYQHLRRRYHAQRCLSLFRLFSTAERNAEAMKFFRDALK
                     ADPWVLLRWTYTRKALRILLGLRSRRRPS"
BASE COUNT          576 a          865 c          837 g          495 t
ORIGIN      
        1 gcgcacagac ctgtggatag gcaggatggt cggcgaagcg cgcataggtc gccatgaccg
       61 tctcgatcat gaagcgacgg ttcttgtagg tattcgcgcc atgcacgcga tactgggcca
      121 acacgtccgg cagcacatcg atgaagtaac ccgcctgggt aatcttgagt tcgatcagca
      181 gatcctccag acgaatgctg ggatcgaagc cgccgacccg ctcaagcgcc tcacgccgaa
      241 agagcaatgt gggggccggc gcgcccgcct gatcgccgca gaacaccgca tcgaaatcca
      301 gccgtcggaa ggctcgctca cggtctcgtt tcgacaggga gactccgtta ccgtcgatat
      361 gggcgatgtt gccggcacag atgccgacct ccggcttgtc tcgcatgtac gccacctggg
      421 tggcgaggcg cccgggcagc atcacgtcgt cggaaccgaa tggcgcaatc agactgccgc
      481 gcgaacgagc gatgcaatcg ttgagcgtac gtgcaagccc ctggttggcc tgggtccgaa
      541 agtcgaaccc gtgcgcacgc tgcagcgcct ggatacgtac gacgctgtcg tccgtggagc
      601 catcgtcgac caccagcagc tctatcggtg tgtaggtctg agacaggacg ctctcgatcg
      661 ccgcctcgat gtagggcgca tggttatagg aggcgatgat cacgctgacc agaggttggt
      721 cagacatcgc ggtgctccag catccgctcg atcagctcgc gataatgtcg ccgaaaatct
      781 tcgaccgcat gagaaccgcg cagatagtcg tatgcgcgcc ggcccatcgc ctcgcgcgcc
      841 tcggcaggct ggccgagcat gttgcgcagc tgccgctcca gcgagggaac gtcggcaggc
      901 tcgaacatca ggccgccgca atcctggagg atcggcttca ggctatcgat ggatgtcccc
      961 atcaccggga gtcggccact cataccctcg agtagcgcga gcggcagccc ttcgctcaac
     1021 gacggcatga tgaagatatc gaaagccttc acgtattgca gggcgtcatc cagtgtaccc
     1081 ggcagatgta cgcgcccctg cagcccttgc tggtcgatgg aggcctgcaa ttcggcgcgg
     1141 catcttccgt caccgatgat aacgagctgt gccgccggga aatcctgcct caggcgggca
     1201 aacgcctcca gcaggtagat atgtcccttg accggcacga ggcggcctat ggtgccgacg
     1261 atcaacgcgg atgcctccag ccccaagcgc gtccgggcct cgcagcgatc cagctgcaac
     1321 gcctcggacc gctcgatatc gatggcgttg ttgatctgga ccgtattgcc cggctccatc
     1381 ccacagcggg aaccaagcag atcctccctg accgcccggg aaacaccgac gaagcaccac
     1441 cgcctggtcg acagacctag cgtcacccat tggcgatagc gacggtcaaa ttcgcccaga
     1501 ccatgcaata caccgatgca ggcggggaat ctcaagaccc ggttcagcag catgagcagg
     1561 ttgataggct tgaaacgatg cccgatcacg agatcgtaat cgttttcccg acagtgccgg
     1621 tatagcgtcc acagtactct gagacgcatg cccttggtcg ccgcctggct gaagccgaaa
     1681 tatacggaac gaggcgcaca actgtgcggt tcatcggccg cggggcgtcc gcgcaagaac
     1741 gcggtggtga cttcatatcg ctcgccagga agcgccttga cgatctgctc ggccaggtcg
     1801 gcggcgctga cgttgtagcg attctgcagc tgcagcactt tgaaacggcg agtcatgagg
     1861 gccgcctccg gctccgcaag cccagcaata tgcgtagcgc tttacgtgtg taagtccagc
     1921 gcagcagcac ccagggatcc gctttcaggg cgtcacgaaa gaacttcatc gcctctgcgt
     1981 tgcgctccgc agtgctgaac aggcgaaaga gcgagaggca acgctgagcg tgatagcgac
     2041 gccgcaggtg ctgataatct gccggcattc tccgctccga aaacacttca tcgaccagct
     2101 cgacgccggt ttgccgcgcg tagtcgaggt tgcgccgcaa gctagtgggg tgcttgtaga
     2161 tcgccgccat cggcgcattc agcaccgtgc agggaaaacg tgccagcacc tgcgcgaaca
     2221 ccgggatgtc ctcggcatta cgaatacgct ccgggtacac ccccgccgag aatacctctc
     2281 ggtgcatggc acaagcgcca ttgcacagcg agagggtctt gtcgaacagg taagcttcta
     2341 gacgtgcatc aggcgtagcg ggcagttgcc ccacggggtg ttcgaacttt cgtccgtcga
     2401 aagccacaga gtgatgacca gcgatgacca ttctggtgtg cggctgctgc gagatatgaa
     2461 ggctcaaggc agccaatgcg ccgggcagca tttcatcgtc ggcatcgaga aaaacaagat
     2521 actggccacg agacgcggct atcccgtgat ttctcaccga ggccagaccg ccgttctcct
     2581 tgtgcacggc agtgaagcgg tcgccataca ggtcctgcag ctcggcaatc acctggcgag
     2641 tgttatccgt ggagccatcg tcgatgacca gcaactcggc atcggcatcc gacagttgcg
     2701 ccatcacgga ccctaccgct cgcggcagca cagaggcgta gttgtaggtc ggaatgacca
     2761 cactgatcag ctt
//
LOCUS       DATIHC010000407         2240 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33850, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000407 DATIHC010000000
VERSION     DATIHC010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2240)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2240)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2240
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33850"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..227
                     /locus_tag="VLF16_06555"
     CDS             <1..227
                     /locus_tag="VLF16_06555"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016436 - rRNA (uridine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="RsmE family RNA methyltransferase"
                     /protein_id="HSX70576.1"
                     /translation="LKLVLHPVAAPLESHARPRSLAFLIGPEGGLTEAEVEQAGAAGF
                     HPARLGPRVLRTETAPVVALAVAQQLWGDF"
     gene            449..1942
                     /locus_tag="VLF16_06560"
     CDS             449..1942
                     /locus_tag="VLF16_06560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011920663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005283 - amino acid:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine/glycine:cation symporter family protein"
                     /protein_id="HSX70577.1"
                     /translation="MNELVSTLNGLVWSPALIYLCLGVGLYFSLRGRFLQVRHFKEMI
                     RLMFNGRTDEHGITSFQALTMTLAGRVGTGNIAGVATAITFGGPGAVFWMWMVAFLGA
                     SSAFVESTLGQVYKEKLDGQYRGGPAFYIEKGLGIKWFAWAFAIVTIFACGLLLPGVQ
                     ANSIASSVQTAFDVHPNTTAAILAIMLGLIIFGGVKRIARFAEFVVPFMALGYILVAC
                     VIVMLNIEKLPEVVALIFKSAFGLEAGFGAILGLAIMWGVKRGVYSNEAGQGTGPHAS
                     SAAAVSHPAKQGLVQGFSVYIDTLFVCSATAFMLLITGQYNVQAPDGSALFTGVAGVA
                     AGPGYVQTAMENMMPGFGNIFVAVALFFFAFTTIVAYYYIAETNIAYINRKVQRPILT
                     LLLKVGIIAATVYGTVKTADLAWGLGDLGVGLMAWLNIVAILLMHKTAFKCLKDYEAQ
                     QKEGKEPVFHPEKLGIKNADYWGTRTSEDNAAADQAAEAQGRAEAQR"
     gene            complement(2001..>2240)
                     /locus_tag="VLF16_06565"
     CDS             complement(2001..>2240)
                     /locus_tag="VLF16_06565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HSX70578.1"
                     /translation="VFWGALGSALAGIVDGTPSQAQMAVFFAGFMFASLLWCFVCAAL
                     VDWLRRHTSVFWQRVSYAACGLMLLVLAGLTLRVL"
BASE COUNT          384 a          779 c          697 g          380 t
ORIGIN      
        1 atctgaagct ggtcctgcat ccggtggcgg cgccgctgga gagccatgcc aggccccgga
       61 gcctggcctt cctgatcggc cccgaaggcg gcctgaccga ggctgaggtc gagcaggccg
      121 gggccgccgg ttttcacccc gcacgcctgg gcccgcgggt gctgcgcacc gagacggcac
      181 cggtggtggc gctggcagtc gcccagcagc tgtggggcga tttctagcgc gagtgtcgcc
      241 ttgacgtaac aagatgtgac ttcagcgaat ggcaagtgcg tccgcctctg gcatgctctg
      301 cgcgccgacg gcggtccgca tccataattg cgccgccttt gccgaggtcg acacgtatcg
      361 tgccgacctc actccaataa caatttgccg ggaccccgga cctttcaaga gaaggccgca
      421 ccccgtcccg ggccaacagg agcactcaat gaacgaactg gtctcgacac tcaacgggct
      481 ggtctggagc ccggcactga tctatctgtg cctcggcgtc ggtctgtact tttccctgcg
      541 cggccgcttc ctgcaggttc gccacttcaa ggaaatgatc cgcctgatgt tcaacggtcg
      601 caccgatgaa cacggcatca cctccttcca ggcgctgacc atgaccctcg ccggtcgcgt
      661 cggtaccggc aacatcgccg gcgtcgccac cgccatcacc ttcggcggcc ccggcgccgt
      721 gttctggatg tggatggtgg ccttcctcgg cgccagctcg gccttcgtcg agtccaccct
      781 cggccaggtc tacaaggaga agctggacgg ccagtaccgc ggcggcccgg ccttctacat
      841 cgagaagggt ctgggcataa aatggttcgc ctgggccttc gccatcgtca ccattttcgc
      901 ctgcggcctg ctgctgccgg gtgtacaggc caactccatc gcctccagcg tgcagaccgc
      961 cttcgacgtg caccccaaca ccaccgcggc gatcctggcc atcatgctcg gcctgatcat
     1021 cttcggcggc gtcaagcgca tcgcccgctt cgccgagttc gtggtgccgt tcatggcgct
     1081 cggctacatc ctggtggcct gcgtcatcgt catgctgaac atcgagaagc tgccggaagt
     1141 ggtcgcgctg atcttcaaga gcgccttcgg actggaagcc ggcttcggcg ccatcctcgg
     1201 cctggccatc atgtggggcg tgaagcgtgg cgtgtactcc aacgaagcag gccagggcac
     1261 cggcccgcac gcctcgtcgg ccgccgccgt cagccacccg gccaagcagg gcctggtgca
     1321 gggcttctcg gtgtacatcg acaccctgtt cgtctgctcc gccaccgcgt tcatgctgct
     1381 gatcaccggc cagtacaacg tgcaggcacc tgatggcagc gcgctgttca ccggcgtcgc
     1441 cggcgtcgcc gcgggcccgg gctacgtgca gaccgcgatg gagaacatga tgccgggctt
     1501 cggcaacatc ttcgtcgccg tggcgctgtt cttcttcgcc ttcaccacca tcgtggcgta
     1561 ctactacatc gccgaaacca acatcgccta catcaaccgc aaggtgcagc gcccgattct
     1621 gaccctgctg ctgaaggtcg gcatcatcgc ggccaccgta tacggcaccg tgaagaccgc
     1681 cgacctggcc tggggcctgg gcgatctggg tgtgggtctg atggcctggc tgaacatcgt
     1741 cgccatcctg ctgatgcaca agaccgcgtt caagtgcctg aaggactacg aggcgcagca
     1801 gaaggaaggc aaggagccgg tgttccaccc ggagaagctc ggcatcaaga acgccgacta
     1861 ctggggtacc cgcacctccg aagacaacgc tgccgctgac caggccgccg aggcccaggg
     1921 ccgggcagaa gcccagcgct gagtcgcaac gttctgaacg agccccggta ccgcaaggtc
     1981 cggggctttt tcttggtggc tcagaggacg cgcaacgtga gtcccgccag caccagcagc
     2041 atcagcccgc aggcggcgta gctgacgcgc tgccagaaga ccgacgtgtg gcggcgcagc
     2101 cagtccacca gcgcggcgca gacgaagcac cagagcagcg aggcgaacat gaagccggcg
     2161 aagaacaccg ccatctgcgc ctggctcggc gtgccgtcga cgatgcccgc cagcgcgctg
     2221 cccagggcgc cccagaacac
//
LOCUS       DATIHC010000408         1833 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33853, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000408 DATIHC010000000
VERSION     DATIHC010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1833)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1833)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1833
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33853"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1012)
                     /locus_tag="VLF16_06570"
     CDS             complement(<1..1012)
                     /locus_tag="VLF16_06570"
                     /inference="COORDINATES: protein motif:HMM:NF012263.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b/b6"
                     /protein_id="HSX70579.1"
                     /translation="MSEHSTYVPGNAVEKWLDDRLPVVRFAKEHLMDFPTPKNLNYWW
                     TFGAILVMCLGVQIVTGIILAMHYTPNVAMAFDSVEHIRRDVNGGRIIQATHAVGASM
                     FFVALYIHMFRGLFYGSYKAPREILWVLGVLIFLLTTATAFMGYILPWGQMSFWGATV
                     ISNIFSAIPLVGDSIKQLVLGGFAVGNPTLNRFFSLHYLLPFIIAAVVALHIWALHVP
                     GNNNPVGVEVKDSRDTVAFHPYYTMKDLFAMVVFMIPFAWFVFFAPDILGHPDNYIMA
                     NSQVTPAHIVPEWYLLPFYTILRAIDFNVLFIDSKLGGVIAMGGAMLCLLVVPWLDTS
                     KVR"
     gene            complement(1027..1554)
                     /gene="petA"
                     /locus_tag="VLF16_06575"
     CDS             complement(1027..1554)
                     /gene="petA"
                     /locus_tag="VLF16_06575"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR01416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045275 - respiratory chain complex III
                     [Evidence IEA];
                     GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HSX70580.1"
                     /translation="MSTQAEHTTTNRRDFLFVATGAVGAVGAAAVVWPLINQLNPDAS
                     TLALASIQYDVGAIEEGQSVTIMWRGLPVFVRHRTPAEIEEARAVPLSDLKDPATDES
                     RVKEGHAEWLIMIANCTHLGCIPTGQAGDFDGWFCPCHGSHYDSSGRIRRGPAPANLV
                     VPPYEFVSDTLVQIG"
BASE COUNT          379 a          545 c          595 g          314 t
ORIGIN      
        1 agcgcacctt ggacgtgtcg agccacggca cgaccaagag gcacagcatg gcgccgccca
       61 tggcgatcac gcctccgagc ttggagtcga tgaacagcac gttgaagtcg atggcgcgca
      121 ggatcgtgta gaacggcagc aggtaccatt cgggcacgat gtgggcaggc gtcacctggc
      181 tgttggccat gatgtagttg tcggggtggc ccaggatatc gggcgcgaag aacacgaacc
      241 aggcgaaggg gatcatgaag accaccatcg cgaacagatc cttcatcgta tagtacggat
      301 ggaaggccac cgtatcgcgg ctgtccttca cctcgacgcc gaccgggttg ttgttgcccg
      361 gcacgtgcag cgcccagatg tggagcgcca cgacggctgc gatgatgaac ggcagcaggt
      421 agtgcagcga gaagaagcgg ttgagcgtcg ggttgccgac ggcaaagccg cccaggacca
      481 gctgcttgat gctgtccccg accagcggaa tggccgagaa gatgttcgag atgaccgtgg
      541 cgccccagaa cgacatctgg ccccagggca ggatatagcc catgaaggcg gtcgcggtgg
      601 tcaggaggaa gatcaggacg cccaggaccc agaggatttc gcggggggcc ttgtaggagc
      661 cgtagaacag tccgcggaac atgtggatat agagcgccac gaagaacatc gaggcgccca
      721 cggcgtgagt tgcctggata atgcggccgc cattgacgtc gcggcggata tgctcgaccg
      781 agtcgaaggc catcgccaca ttgggcgtat agtgcatggc caggataatg ccggtgacga
      841 tctgcacgcc gaggcacatc acgagaatgg cgccgaaggt ccaccaatag ttgagattct
      901 tcggggtggg gaaatccatg agatgctctt tggcgaagcg caccaccggc aggcggtcgt
      961 ccagccactt ctcaacggca tttcccggaa cgtaagtcga atgttctgac atcggaaaag
     1021 cccccactaa ccgatctgga ccagcgtatc gctgacgaat tcatacggcg gcacgaccag
     1081 gttggcaggc gccggaccac ggcggatacg acccgaggag tcgtagtgcg aaccgtggca
     1141 ggggcagaac caaccatcga agtcgcccgc ctgaccggtc gggatgcaac caagatgggt
     1201 gcagttggcg atcatgatca gccactcggc gtggccttcc ttgacgcgcg attcgtcggt
     1261 tgccgggtcc ttgaggtcgg acagcggcac cgcgcgggct tcttcgatct cggccggggt
     1321 gcggtggcgc acgaagaccg gcaggccacg ccacatgatg gtgaccgact gcccttcctc
     1381 gatcgcgccg acgtcatact ggatactggc cagagccagc gtcgacgcgt cgggattgag
     1441 ctgattgatc agcggccata ccaccgcggc tgcaccaacg gcgcccacgg cgcccgtggc
     1501 gacgaagaga aaatcccgcc ggttggtggt tgtgtgttct gcttgcgtgg acaagtccgt
     1561 ttccccgtac gatgcacaaa tgacggagcc ggcaccagcc ttcgaccact tcaagcagaa
     1621 tcgacgagcc ggccgccctc aagcggtccg tcagttgggg ttctttttgc actctcgggg
     1681 gggcttgtcc agtgcgcggc gggtgacagt gtgtggctgc acaactatat ccttgccccg
     1741 ctcccttcca tcggccctcc gcgccccgca aatgaagcgc atcgtgtccc tcgatctagc
     1801 cctctatcag cccgatatcg cccagaatac cgg
//
LOCUS       DATIHC010000409         3796 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_40879, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000409 DATIHC010000000
VERSION     DATIHC010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3796
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40879"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3527)
                     /locus_tag="VLF16_06580"
     CDS             complement(<1..3527)
                     /locus_tag="VLF16_06580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004420180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HSX70581.1"
                     /translation="MLGLLLWQLHQEASNQEESERRHHLDHAEQVSQQLSLAMRLKAE
                     AGLAFLASTAESPPALADRAALLQRLRGIFPALHSLAWFDAEGRLLADSQPTPTQPPF
                     AAERPYRFALADDLLLLDLPRADGEGGWRVRLTTRALHSWLPRQPHELPWLLLDPASA
                     TVMLKQPEEAVANADTRLAELPLAGSDWRLVPLFDAAALRAELLPRQASKLLLFILCG
                     ALALLALFGLLREQNRLRDYHALSRRSMEDAIGALGAIDERVLVTQADGHISYLNPRA
                     EQMFGLDLATASEMHVLELLPALAPWLESAFYEQAEPIEVLQDGERRLFDVTCHALYT
                     DNPEPGRAWVLRDVTEQRQALRVLQDTRRRYQDIFEGSGVALCVLDLFELKAYLDAQD
                     LHHSAQLMPWLAEDETRHAELLRRIRISEVNKVALQLLGVDDARQVWTHLISSSSLRP
                     GGARHALVCALLDGNRDMMVESRTRTPLGHERYLWINLQLPESRDELRAVTLAVHDIT
                     SRKRVELSLAERERFWSDVLRAVPDTLYVHDMSSMRVMFSNNRLGPDLGYSKKELHQL
                     GERLWEKILHPDDVELYQRVRNLQKVVGQGQQLQFRLRWRHRDGSWHWFDVREHALSR
                     DRNGRVSRLIGVAKDITGEITAQASLLDSERRYRMLAESISDVILSSNSELQLNYVSP
                     SAQVFFGYSPEWLLEHGLLGIVTNPRQLSGMLQLLGEVRGVLGEPDKLLALHDRLHGK
                     PFVFDCLHADGRKITVEMRLTLMWDEQERFEGLLGIGRDITQQRRAERDLRMAATVFD
                     HSTAAILVTDPAGYIVRINETFQRISGYAGKEVLDQLPGMLTADRQQAAQFAYILTQL
                     NHHGSWEGELWLKRKNGEQFPAWVGITAVHDDDGDLVSYVCFFNDISERKASEQRIHR
                     LAYYDALTLLPNRTLFQDRLHTALQHAERHEEWVVLMFLDLDRFKPINDSLGHAAGDR
                     MLKDVAVRLAACVDEDDTVARMGGDEFTLLLQPRNTRAGALNRAIHVAEQILASLAQP
                     FVLQGREFFVTASIGIALAPQDGNELSQLMKNADTAMYHAKERGKNNFQFYQAEMNAT
                     ALQRLELESDLRHALEQGQFLLYYQPQLSGDGKRLTGVEALLRWNHPRRGLVAPYEFI
                     PVLEELGLIVQVGDWVITEACRQLKAWHEA"
BASE COUNT          548 a         1212 c         1413 g          623 t
ORIGIN      
        1 gcctcgtgcc aggccttgag ctggcggcag gcctcggtga tcacccagtc gccgacctgg
       61 acgatcaggc ccagctcctc cagcaccgga atgaattcgt acggggccac caggccgcga
      121 cgcgggtggt tccagcgcag cagcgcctcg acgccggtca ggcgcttacc gtcgccggac
      181 agctgcggct ggtaataaag gaggaactgg ccctgctcca gggcgtggcg caggtcgctc
      241 tccagctcca ggcgctgcag cgcggtggcg ttcatttccg cctggtagaa ctggaagttg
      301 ttcttgccgc gctccttggc gtggtacatc gccgtgtcgg cgttcttcat cagctggctc
      361 agctcgttgc cgtcctgcgg cgccagggcg atgccgatgg aggcggtgac gaagaactcg
      421 cggccctgca gcacgaacgg ctgcgccagg ctggcgagga tctgctcggc cacgtggatg
      481 gcgcggttca gcgcgccggc gcgggtgttg cgcggttgca gcagcagggt gaattcgtcg
      541 ccgcccatgc gcgccacggt gtcgtcctcg tcgacgcagg cggccaggcg cacggccacg
      601 tccttgagca tgcggtcgcc ggcggcatgg ccgagggagt cgttgatcgg cttgaagcgg
      661 tcgaggtcga ggaacatcag caccacccat tcctcgtggc gctcggcgtg ctgcagcgcg
      721 gtgtgcaggc ggtcctggaa cagcgtgcgg ttgggcagca gggtcagggc gtcgtagtag
      781 gccaggcggt ggatgcgctg ctcgctggcc ttgcgctcgc tgatgtcgtt gaagaagcac
      841 acgtagctga ccaggtcgcc gtcgtcatcg tgcaccgcgg tgatgccgac ccaggcgggg
      901 aactgctcgc cgttcttgcg cttgagccac agctcgcctt cccagctgcc gtgatggttg
      961 agctgagtga ggatgtaggc gaactgagcc gcctgctggc gatcggcggt gagcatgccg
     1021 gggagctggt cgagcacttc cttgccggcg tagccgctga tgcgctggaa ggtctcgttg
     1081 atgcgcacga tgtaaccggc cgggtcggtg accaggatgg ccgcggtgga gtggtcgaac
     1141 accgtggcgg ccatgcgcag gtcgcgttcg gcgcggcgct gctgggtgat gtcgcggccg
     1201 atgccgagca ggccctcgaa gcgctcctgt tcgtcccaca tcagggtcag gcgcatttcc
     1261 acggtgatct tgcggccgtc cgcgtgcagg cagtcgaaga cgaacggctt gccgtgcaga
     1321 cggtcatgca gggcgagcag cttgtcgggt tcgccgagca cgccgcgcac ctcgccgagc
     1381 agctgcagca taccggacag ctggcgcggg ttggtgacga tgccgagcag gccgtgctcc
     1441 agcagccatt ccgggctgta gccgaagaac acctgggccg aggggctgac gtagttgagc
     1501 tgcagctcgc tgttgctgga gaggatcacg tcgctgatgc tctcggcgag catgcggtag
     1561 cgccgctcgc tgtcgagcag gctggcctgg gcggtgatct cgccggtgat gtccttggcc
     1621 acgccgatca ggcggctgac ccggccattg cggtcgcggc tcagcgcgtg ctcacgcacg
     1681 tcgaaccagt gccagctgcc atcgcggtgg cgccagcgca ggcggaactg cagctgctgg
     1741 ccctggccga ccaccttctg caggttgcgc acgcgctggt acagctcgac gtcgtcgggg
     1801 tgcaggatct tctcccacag ccgctccccg agctggtgca gttccttctt gctgtagccg
     1861 aggtccgggc ccaggcggtt gttgctgaac atcacccgca tgctgctcat gtcgtgcacg
     1921 tagagggtat ccggcaccgc gcgcagcacg tcggaccaga agcgctcgcg ctcggccagc
     1981 gacagctcca cgcgcttgcg gctggtgatg tcgtgcaccg ccagcgtcac ggcgcgcagc
     2041 tcgtcgcggc tttccggcaa ttgcaggttg atccacaggt agcgctcgtg gcccagcggt
     2101 gtgcgggtac ggctctccac catcatgtcg cggttgccgt ccagcagggc gcagaccagg
     2161 gcatggcgcg cgccgcccgg gcgcagcgag gacgagctga tcaggtgtgt ccagacctgc
     2221 cgcgcgtcgt ccacgccgag cagttgcagg gcgaccttgt tcacctcgct gatgcggatg
     2281 cgccgcagca gctcggcatg gcgcgtctcg tcctcggcca gccagggcat cagctgggcg
     2341 ctgtggtgca ggtcctgggc gtcgaggtag gccttgagct cgaacaggtc gagcacgcag
     2401 agggccacgc cgctgccctc gaagatgtcc tgatagcgcc ggcgggtgtc ctgcagcacg
     2461 cgcagggcct ggcgctgttc ggtgacatcg cgcagtaccc aggcgcggcc cggttcggga
     2521 ttgtcggtgt agagcgcgtg gcaggtgacg tcgaacaggc gccgctcgcc gtcctgcagc
     2581 acctcgatgg gctcggcctg ctcgtagaag gcgctctcca gccagggcgc cagggccggc
     2641 agcagttcca gcacgtgcat ctcgctggcg gtggccaggt cgaggccgaa catctgctcg
     2701 gcgcgcgggt tgaggtagct gatatgaccg tcggcctggg tcaccagcac ccgctcgtcg
     2761 atcgcgccga gggcgccgat ggcgtcttcc atcgagcgcc gcgacagggc gtggtagtcg
     2821 cgcaggcggt tctgttcgcg cagcaggccg aacagggcga gcagggcgag ggcgccgcag
     2881 aggatgaaca gcagcagctt gctggcctgg cgcggcagca gttcggcgcg cagggcggcg
     2941 gcgtcgaaca gcggcaccag gcgccagtcg ctgccggcca gcggcagctc ggccaggcgc
     3001 gtgtccgcgt tggcgacggc ctcttccggc tgcttgagca tcaccgtggc gctcgccggg
     3061 tccagcagca gccagggcag ttcgtggggc tggcgcggca gccagctgtg cagcgcccgg
     3121 gtggtcaggc gcacgcgcca gccgccttca ccgtcggcgc gcggcaggtc gagcaggagc
     3181 aggtcgtcgg ccagggcgaa gcggtagggc cgctcggcgg cgaagggcgg ctgggtcggc
     3241 gtgggctggc tgtcggcgag caggcggccc tcggcgtcga accaggccag gctgtgcagg
     3301 gcggggaaga tgccgcgcag gcgctgcagc agcgcggcgc gatcggcaag ggcgggcggg
     3361 ctttccgccg tgctggcgag gaaggccagg ccggcctcgg ccttcaggcg catggccagg
     3421 ctcagctgct ggctgacctg ctcggcgtgg tccagatgat ggcgtcgctc gctttcctcc
     3481 tggttgctcg cctcctggtg caactgccac agcagcaggc cgagcatcag cgccaccagc
     3541 agcgccagga tgcctttcag cgagccacgc gaggaccagg cgagcggatc ggtggggcgg
     3601 gaggaggaac gggatcggga cacgcggttt taaaccctgc tgataaggct gcctgaacgg
     3661 tggcaatgag cgggcgacag gaaccgcgta gcatgcccgg aaaagaggca gagtgccatt
     3721 actgtccatc gcccggtttg ccccacgggg tgcattccgg taacttcgcc gcacgcgcgt
     3781 gggcgcgggg ctatgc
//
LOCUS       DATIHC010000410         1617 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8122, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000410 DATIHC010000000
VERSION     DATIHC010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8122"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..503)
                     /locus_tag="VLF16_06585"
     CDS             complement(<1..503)
                     /locus_tag="VLF16_06585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003153137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsiV family protein"
                     /protein_id="HSX70582.1"
                     /translation="MRVLRPLFLLLCLLAPQAFADGLFQIEVIVFRQGGEALSSSQPA
                     PDDWAVGASPIAGNERGTALNDEAAKLNPGNGYEVLLHKAWAQNLAAVPSEAALSTGN
                     EQFGHFPVEGVVSLSEQQRLIDMEADFWINRFDTDGLLTGSERVRQKTRLKLGELTYL
                     DNGSLGVL"
     gene            complement(515..>1617)
                     /locus_tag="VLF16_06590"
     CDS             complement(515..>1617)
                     /locus_tag="VLF16_06590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009621370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TRCF domain-containing protein"
                     /protein_id="HSX70583.1"
                     /translation="RRLSVRTFVMEQHDSVIKEALLRELLRGGQVYYLHNDVKTIEKC
                     AADLSALVPEARIGIGHGQMHERDLERVMSDFYHKRFNVLVASTIIETGIDVPSANTI
                     LIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKGMTEDAQKRLEAIANAQDLGA
                     GFVLATHDLEIRGAGELLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLG
                     GGPEVNLRVPALIPDDYLPDVHSRLILYKRIASAADEDGLKELQVEMIDRFGLLPEPT
                     KNLMRLTLLKLQAEKLGIKKIDAGPQGGRIEFAADTCVDPLVLIKLIQSAPARYKFEG
                     ATLFKIQVPMERPEERFNTLEALLERLAPQSA"
BASE COUNT          228 a          521 c          568 g          300 t
ORIGIN      
        1 agtacgccca ggctgccgtt gtccaggtag gtcagctcgc cgagtttcag gcgggtcttc
       61 tgccgcacgc gctcgctgcc ggtgagcagg ccgtcggtgt cgaagcggtt gatccagaag
      121 tccgcctcca tgtcgatcag ccgttgttgc tcgctcagcg acacgacgcc ctccaccggg
      181 aagtggccga actgctcgtt gccggtgctc agcgcggcct cgctcggtac ggcggcgagg
      241 ttctgcgccc aggccttgtg cagcagcacc tcatagccgt tgcccgggtt gagcttggcg
      301 gcctcgtcgt tcagtgcggt gccgcgctcg ttgccggcga tgggcgaggc gcccacggcc
      361 cagtcgtccg gcgccggctg gctgctcgac agcgcctcgc cgccctgacg gaagacgatc
      421 acttcgatct ggaacaggcc gtcggcgaag gcctgcgggg ccagcaggca gagcagcaga
      481 aagagggggc gaagcacgcg catgggtcag tcctttaggc ggattgcggg gcgaggcgct
      541 ccagcagcgc ctccagggtg ttgaaacgtt cttccgggcg ctccatcggc acctggatct
      601 tgaacagcgt ggcgccctcg aacttgtagc gggcgggcgc gctctggatc agcttgatca
      661 gcaccagtgg gtcgacgcag gtgtcggcgg cgaactcgat gcgtccgcct tgggggccgg
      721 cgtcgatctt cttgatgccg agcttctccg cctgcaactt gagcagggtc aggcgcatca
      781 ggttcttggt cggctccggc aacaggccga agcggtcgat catctccacc tgcagctcct
      841 tcaggccgtc ttcgtcggcg gccgaggcga tgcgcttgta gaggatcagg cggctgtgca
      901 cgtccggcag gtagtcatcg gggatcagtg ccggcacccg caggttgact tccgggccgc
      961 cgcccagcgg ctgctccaga ttgggctgct cgcccttgcg gatagccttc accgcgcgct
     1021 cgagcatctc catgtagagg gtgaagccga ccgcctggat ctgtccgctc tggccgtcgc
     1081 cgagcaattc gccggcgccg cggatctcca ggtcgtgagt cgccaggacg aagccggcgc
     1141 ccaggtcctg ggcattggcg atggcctcca ggcgcttctg cgcatcctcg gtcatgccct
     1201 tgcgtggcgg ggtgagcagg taggcgtagg cctggtggtg gctgcgcccg acgcggcctc
     1261 gcaactggtg cagctgggcc aggccgaact tgtcggcgcg ctcgatgagg atggtgttgg
     1321 cgctgggcac gtcgatgccg gtctcgatga tggtcgaggc caccagcacg ttgaagcgct
     1381 tgtggtagaa gtcgctcatc acccgttcca ggtcgcgctc gtgcatctgc ccgtggccga
     1441 tgccgatgcg cgcctccgga accagggcgg acaggtcggc ggcgcacttc tcgatggtct
     1501 tcacgtcgtt gtgcaggtag tacacctggc cgccgcgcag cagttcgcgc agcagcgctt
     1561 ccttgatcac cgagtcgtgc tgctccatga cgaaagtgcg caccgacagg cggcggg
//
LOCUS       DATIHC010000411         2097 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37937, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000411 DATIHC010000000
VERSION     DATIHC010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37937"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            115..1149
                     /gene="holA"
                     /locus_tag="VLF16_06595"
     CDS             115..1149
                     /gene="holA"
                     /locus_tag="VLF16_06595"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003286526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HSX70584.1"
                     /translation="MKLNPAQLGKHLQGGLAPVYVVSGDEPLLCQEAEDAIRAATRQQ
                     GFSERQVFHAEASFDWGLLYEAGASLSLFAEKRLIELRIANGKPGDKGTAAILEYLER
                     PPEDTVLLISLPKLDGSTQKTKWAKALIDGQHSQFLQIWPIEVAQLPNWIRQRLSQAG
                     LAASQEAVELIAARVEGNLLAAAQEIEKLKLLAEGNQIDAGTVQAAVADSARYDVFGL
                     IDAVLNGEASHALRMLEGLRGEGVEPLFIVVMLARELRQLAGLALQFSQGVPLEKAFA
                     SARPPIWDKRRPLMSKALQRHTAARWNQLLIDAQRIDAQVKGQAAGDAWSSLARLALL
                     MAGQRLPLSE"
     gene            1225..1398
                     /gene="arfA"
                     /locus_tag="VLF16_06600"
     CDS             1225..1398
                     /gene="arfA"
                     /locus_tag="VLF16_06600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003419331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0072344 - rescue of stalled ribosome
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome rescue factor ArfA"
                     /protein_id="HSX70585.1"
                     /translation="MSKKAPKRPNKAKSIVAQPLFRSRQEQPKKGKGSYRREASQQNW
                     EASCFMGPVLRCA"
     gene            1498..>2097
                     /locus_tag="VLF16_06605"
     CDS             1498..>2097
                     /locus_tag="VLF16_06605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020289593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
                     /protein_id="HSX70586.1"
                     /translation="MFQLSTKGRLSSLLAGTALLLGACAETPNPAPQLAAPDKAAAQP
                     QQVAASSAPAQDAVQLTPAISFDDWRAQFRGKALSAGIPAELFDRAFAGVTPDLSVVK
                     ADRAQPEFTRPVWEYLDGAISPVRVRKGQALLAEHAATLTAIEQRYGVDRETLVAIWG
                     MESSFGQFMGDNSVIRSLATLAYEGRRPQFAEDQLLAALQ"
BASE COUNT          370 a          762 c          680 g          285 t
ORIGIN      
        1 gccgaggagt cgatgccgca acaatcgccg atccagctgc cgattccgca gcagtgatcg
       61 agaagggccg ggtgaccggc ccttttcacg agtcccgatg acactcggct ttcgatgaaa
      121 ctgaatcccg cgcaactcgg caaacacctg caaggcggtc tggccccggt ctacgtggtc
      181 agcggcgacg agccgctgct gtgccaggag gccgaggacg ccatccgcgc cgccacccgc
      241 cagcagggct tcagcgagcg ccaggtattc cacgccgagg cgagcttcga ctgggggctg
      301 ctctacgagg ccggcgccag cctctcgctg ttcgccgaga agcgcctgat cgagctgcgc
      361 atcgccaacg gcaagcccgg cgacaagggt accgccgcca tcctcgagta cctcgagcgg
      421 ccgccggaag acacggtgct gctgatcagc ctgcccaagc tcgacggcag cacgcagaag
      481 accaagtggg ccaaggccct gatcgacggg cagcacagcc agttcctgca gatctggccg
      541 atcgaggtcg cccagctgcc caactggatt cgccagcgcc tgtcccaggc cggcctggcc
      601 gccagccagg aagcggtgga gctgatcgcg gcgcgggtcg agggcaatct gctggccgcg
      661 gcgcaggaga tcgagaagct caagctgctg gccgaaggca accagatcga cgccggcacc
      721 gtgcaggccg ccgtggccga cagtgcccgc tacgacgtgt tcggcctgat cgacgcggtg
      781 ctcaacggtg aggccagcca cgccctgcgc atgctcgaag ggctgcgcgg cgagggtgtg
      841 gagccactgt tcatcgtcgt catgctggcc cgcgaactgc gccagctggc cggcctggcc
      901 ctgcagttca gccagggcgt gccgctggaa aaggccttcg ccagcgcccg cccgcccatc
      961 tgggacaagc gccgcccgct gatgagcaag gccctgcagc gccacaccgc cgcgcgctgg
     1021 aaccagctgc tgatcgacgc ccagcgcatc gacgcccagg tcaaaggcca ggccgccggc
     1081 gacgcctgga gcagcctggc ccgcctggcc ctgctgatgg ccggccagcg cctgccgctc
     1141 agcgaatagc cgctggacaa ttttcgtaca gcggcgcata gtccgcgccg cccgcaccgt
     1201 cgcgggtcat gcgaggaacc tccgatgagc aagaaagccc ccaagcggcc gaacaaggcc
     1261 aagtccatcg tcgcccaacc gctgttccgc agccgccagg aacagccgaa gaagggcaaa
     1321 ggcagctacc gccgcgaagc ctcccagcaa aactgggagg cttcttgctt tatgggcccc
     1381 gtgttgcgtt gcgcctagcc ggccagagaa tcccgcccca gagccttact ccgtgaaacc
     1441 gggagcggcc gggtcatgtt aaggtcgcgg tctgattggc aagaccgaga caccccgatg
     1501 ttccagcttt ccaccaaggg ccgcctgagc agcctgctcg ccggcaccgc cctcctcctc
     1561 ggcgcctgtg ccgaaacgcc aaatcccgcc ccgcaactgg cagcgcccga caaagccgcc
     1621 gcgcaacccc agcaggtcgc tgcgagcagc gctccggcgc aggacgccgt gcaactgacc
     1681 ccggccatct ccttcgacga ctggcgcgcg cagttccgtg gcaaggcgct gagcgccggc
     1741 atcccggccg agctgttcga ccgcgccttc gccggcgtca ccccggacct gagcgtggtc
     1801 aaggccgacc gcgcgcagcc cgagttcacc cgcccggtgt gggaatacct ggacggcgcc
     1861 atttctccgg tgcgcgtgcg caagggccag gccctgctgg ccgaacatgc cgccaccctc
     1921 acggccatcg aacaacgtta tggggtcgac cgcgagaccc tggtggcgat ctggggcatg
     1981 gagagcagct tcggccagtt catgggcgac aactcggtca ttcgctcgct ggcgaccctg
     2041 gcctacgagg gacggcgccc gcagttcgcc gaggaccagc tactggcggc cctgcag
//
LOCUS       DATIHC010000412         4865 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10486, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000412 DATIHC010000000
VERSION     DATIHC010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4865
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10486"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(116..895)
                     /locus_tag="VLF16_06610"
     CDS             complement(116..895)
                     /locus_tag="VLF16_06610"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017360636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSX70587.1"
                     /translation="MEAEAPTAQLKNMADLTLHSIERIYPPDLDPASPSDQATLRIHL
                     ERYEFAALHLSGARVLDMACGCGYGTALLAERHPDKQVVGVDIDPEAIAYAQRHYRLP
                     NLSYVCADAEGFAAEQRFDNIVSLETIEHLPHPPRLVANYARLLAAGGRVIASVPITP
                     TLDGNPHHLHDFSRRSFLALFRRHRLRPSAQELEQIQRWQFRGLFSRRPDHAKRHRSE
                     GVGNAVLDYYRRHPTYLFSRLAAMLRYGFSNRYLTCLFIAE"
     gene            complement(865..1806)
                     /locus_tag="VLF16_06615"
     CDS             complement(865..1806)
                     /locus_tag="VLF16_06615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012699641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhN family protein"
                     /protein_id="HSX70588.1"
                     /translation="MMKRSDWIWTLIGLAAVVFSCYLLFKEIRTISLDELQESLDAIS
                     LHRWLLAAGATFGAYCALAWYDRIAIAHLGKKISWWFITLCSFTTYALAHNIGASVFS
                     GAVVRYRAYTSKGLIPAEIGVLIVFCSFTFALGVLLSGGAVLLCQPDLIKRVADVGPW
                     LSMCIGALLLGLVGLYVLGSWRQFKPWKWGKLHVEYPRLGIVGRQLLAGPLELACAAA
                     IIYFALPAEGNPGYLVVLGVFLASFSLALLSHAPGGLGVLEVTFLAAMPELPKADVLA
                     ALIVFRAFYLLLPFALSLLVVVGFEWTQWRQRRPRRS"
     gene            2291..3730
                     /locus_tag="VLF16_06620"
     CDS             2291..3730
                     /locus_tag="VLF16_06620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017520910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter family protein"
                     /protein_id="HSX70589.1"
                     /translation="MLIWFVALYLLVTVGIGFYAATRVKNSKDFAAGGRSMGFPIVAA
                     MVFATWFGSEAVLGIPATFIEEGFAGIIEDPFGSFGCLMLVGLIIARPLYRMNLLTIG
                     DYFKKRYGSNVELILSLVIIASYLGWIAAQLTALGVVFNVLSDGSISTTQGMLIGTVI
                     VLLYTLFGGMWSVALTDFFQMLIIVVGLVYLTWLIGDMAGGADVVIAHAANEGKFTFI
                     HGFEPRDIVAFIGAAVTMMLGSIPQQDVYARVMSAKTENIAARASMAGAAFYLCFCML
                     PIFLTYAASMIDPAMVQRWLAEDAQMILPHLILEKTPLFAQIMFFGALLSAIMSTASG
                     TLLAPSVTFTENVLKRFVPAMSDKQFLLAMRLTILVCAAATLTFALYSDASIYEMVGN
                     AYKVTLVAAVVPLFAGLFWKRATTQGALVAIAAGLSSWIYLEYSLTDDAFWPPQLAGL
                     LFSLGGMLLGSLLPQWHREPTGTLVAQPE"
     gene            complement(3775..4347)
                     /locus_tag="VLF16_06625"
     CDS             complement(3775..4347)
                     /locus_tag="VLF16_06625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004373616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HutD family protein"
                     /protein_id="HSX70590.1"
                     /translation="MPARLIQLDRLPASPWKNGGGSTRQLAIHPPGADLEGFDWRISC
                     AQVARGGPFSAFPGVDRSLALLRGDGLRLALGDDVHELRPCADIVDFAGEAAAGAELP
                     GGPVEDLNVMSRRGAWRHRLWHEHVGGERLLHNDADVLLLLCNGGRLRIDGHPSLQAG
                     QALLLEDEHGALCMAGESACLHVAQLYRRP"
     gene            4534..>4865
                     /locus_tag="VLF16_06630"
     CDS             4534..>4865
                     /locus_tag="VLF16_06630"
                     /EC_number="3.5.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004373613.1"
                     /note="catalyzing the hydrolysis of
                     4-imidazolone-5-propionate to N-formimidoyl-L-glutamate,
                     the third step in the histidine degradation pathway;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazolonepropionase"
                     /protein_id="HSX70591.1"
                     /translation="MPLSDSPRRLWREVTVFDGLQQLPEPMAVLVDGEQVAGLWPERD
                     FAPALASGAEEAGRGGVMTPGLVDCHTHLVYAGDRAGEFEQRLEGVSYEEIARAGGGI
                     LSTVRATRA"
BASE COUNT          812 a         1569 c         1643 g          841 t
ORIGIN      
        1 gctggaaagt ggctacggag caaatggtac tcacgcgccg ccgagacaaa agttgatcgt
       61 cctgatgttg gccatcgacg ccagtaatgg ctggcgcgag ccgctctgga atgcgctatt
      121 cggcgatgaa caggcaggtc agatagcggt tgctgaagcc gtagcggagc atcgccgcca
      181 agcgggaaaa caggtaggtg gggtggcgac ggtagtagtc gagcaccgcg ttgccgacgc
      241 cctcggagcg atgccgcttg gcgtggtcgg gtcgccgcga gaacaggccg cggaattgcc
      301 agcgctggat ctgctccagc tcctgcgcgc tcggtcgcag gcggtgccgg cggaacaggg
      361 cgagaaagga gcggcggctg aagtcgtgca gatggtgcgg attgccgtcc agggtcgggg
      421 tgatcggcac cgaggcgatc acccggccgc cggcggccag caaccgcgcg tagttggcca
      481 ccaggcgcgg aggatgcggc aggtgctcga tggtttccag gctgacgatg ttgtcgaagc
      541 gctgctcggc cgcgaagccc tcggcgtcgg cgcagacgta gctcaggttg ggcaggcggt
      601 agtggcgctg ggcgtaggcg atggcctcgg ggtcgatgtc cacgccgacc acctgcttgt
      661 ccgggtgccg ctcggccagc agggcggtgc cgtagccaca gccgcaggcc atgtccagca
      721 cccgggcgcc gctcaggtgc agggcggcga actcgtagcg ctccagatgg atgcgcaggg
      781 tcgcctggtc gctggggctg gcggggtcga ggtctggcgg atagatccgt tcgatgctgt
      841 gcagggtcag gtccgccatg ttcttcagct gcgccgtggg cgcctctgcc tccattgagt
      901 ccattcgaag cccaccacca ccagcagcga aagcgcgaac ggcagcagca ggtaaaaggc
      961 gcggaacacg atcagcgccg ccagtacatc ggctttcggc agttccggca tggcggcgag
     1021 gaaggtcacc tcgagcacgc cgaggccgcc gggcgcgtgg gacagcaggg ccagggaaaa
     1081 ggacgcgagg aacacgccga gcaccaccag atagcccgga ttgccttcgg ccggcagggc
     1141 gaaatagatg atcgccgcgg cgcaggccag ctccagcggt ccggccagca actggcggcc
     1201 gacgataccc aggcgcgggt actcgacgtg cagcttgccc cacttccacg gcttgaactg
     1261 gcgccaggag ccgagcacgt agaggccgac cagcccgagc agcagcgcgc cgatgcacat
     1321 ggacagccag ggcccgacat cggccacgcg cttgatcagg tcgggctggc agagcagcac
     1381 ggcaccgccg gaaagcagca cgccgagggc gaaggtgaag gagcagaaca cgatcagcac
     1441 gccgatctcg gcggggatca ggcccttgct ggtgtaggcg cgataacgca ccaccgcgcc
     1501 ggagaacacc gaggcgccga tattgtgggc cagggcgtag gtggtgaagg aacagagggt
     1561 gatgaaccac caggagatct tcttgcccag gtgcgcgatg gcgatgcggt cgtaccaggc
     1621 gagggcgcag tacgcgccga aagtagcccc agcggcgagc agccagcgat gcagggaaat
     1681 ggcatcgagg ctctcttgca gctcgtccag ggagatggtg cggatctcct tgaacagcag
     1741 gtagcaggaa aatacgactg cggccaaacc gatgagggtc cagatccagt cgcttctttt
     1801 catcatcgac gatggctccc gtcgtttcgc tggaggcaat ccgtggcagt gggcgcaacc
     1861 gcagtatggc agggcaggcg gcgcaaatcg gcgtgcagta tcccggaggc ggcccgcggg
     1921 ctcaagccgc gtgtattcga ctggcgtaac cggctgttac aaggcgcacc ggcaagcggg
     1981 ccgcgcctcg cgaccggctt tgtctggttc gagtgtcaaa aatataaaac tgtgtcgata
     2041 attttctgtt cggaaaatca ttgtctttca tgcgattagg ttattggttg acatcaggcg
     2101 catcccgctt gtgcaggtat ttcgtcattt ttgtttgaca taatttacgg ttttgccaga
     2161 ctgcgcggcc gtgccgctgg gccgcccgaa cgggcccggc ggacataaca aaaaacctgt
     2221 ggtccgccgt tccggtcccc tcgctctcgc ggggcagcat gcggcggcca acgccttcgg
     2281 aaacgggaac atgctgatct ggttcgtcgc gctctacctg ctggtcaccg tgggcatcgg
     2341 cttctacgcc gctacccggg tcaagaactc caaggatttc gctgccggtg ggcgcagcat
     2401 gggcttcccg atcgtcgcgg ccatggtgtt cgccacctgg ttcggctcgg aggcggtgct
     2461 gggcattcct gccaccttca tcgaggaagg tttcgccggc atcatcgagg acccgttcgg
     2521 ctccttcggt tgcctgatgc tggtcggtct gatcatcgcc cgcccgctgt accgcatgaa
     2581 cctgctgacc atcggcgact acttcaagaa gcgctacggc agcaacgtcg agctgatcct
     2641 cagcctggtg atcatcgcct cctacctggg ctggatcgcc gcccagctga ccgccctcgg
     2701 cgtggtgttc aacgtgctct ccgacggctc catcagcacc acccagggca tgctgatcgg
     2761 caccgtgatc gtgctgctct acaccctgtt cggcggcatg tggtcggtgg cgctgaccga
     2821 cttcttccag atgctgatca tcgtcgtcgg cctggtctac ctgacctggc tgatcggcga
     2881 catggccggc ggcgccgacg tggtgatcgc ccacgcggcc aacgagggca agttcacctt
     2941 catccacggc ttcgagccca gggacatcgt cgccttcatc ggcgccgcgg tgaccatgat
     3001 gctcggctcc atcccgcagc aggacgtgta cgcccgggtg atgtcggcca agaccgagaa
     3061 catcgccgcc cgcgcctcca tggcgggtgc ggcgttctac ctgtgcttct gcatgctgcc
     3121 gatcttcctc acctacgccg cctcgatgat cgacccggcg atggtccagc gctggctggc
     3181 cgaggacgcg cagatgatcc tgccgcacct gatcctggag aagaccccgc tgttcgccca
     3241 gatcatgttc ttcggcgcgc tgctgtcggc gatcatgtcc accgcctccg gcaccctgct
     3301 ggcgccctcg gtgaccttta ccgagaacgt gctcaagcgc ttcgtgccgg ccatgagcga
     3361 caagcagttc ctgctggcca tgcgcctgac gatcctggtc tgcgccgccg ccaccctgac
     3421 cttcgccctg tattccgatg cgagcatcta cgagatggtc ggcaacgcct acaaggtgac
     3481 gttggtggcc gccgtggtgc cgctgttcgc cggcctgttc tggaagcgcg ccaccaccca
     3541 gggcgcgctg gtggccatcg ccgcgggcct gagttcctgg atctacctgg aatacagcct
     3601 gaccgacgac gccttctggc cgccgcagct ggccggcctg ctgttcagcc tgggcggcat
     3661 gctgctcggc tcgctgttgc cgcaatggca tcgcgaaccg accggaacgc tggtcgccca
     3721 gcccgagtaa tcggccttcg ctgaccaaac cccgctccgg cggggtttcg catttcaggg
     3781 gcggcgatac agctgggcga catgcaggca ggcggactcg ccggccatgc acagcgcgcc
     3841 gtgctcgtcc tccagcaaca gcgcctggcc ggcctgcagc gaaggatggc cgtcgatgcg
     3901 cagccggccg ccgttgcaca ggagcagcag gacgtcggca tcgttgtgca gcagccgttc
     3961 gccgcccaca tgctcatgcc acaggcgatg ccgccacgcg ccgcgccggc tcatcacgtt
     4021 gaggtcctcg accggcccgc ccggcagctc ggcgccggcg gccgcctcgc cggcgaagtc
     4081 gacgatgtct gcgcaggggc gcagctcatg gacgtcgtca cccagcgcca ggcgcaggcc
     4141 gtcgccgcgc agcagcgcga ggctgcgatc cacaccgggg aaggcggaga acggaccgcc
     4201 gcgagccacc tgggcgcagc tgatgcgcca atcgaaaccc tccaggtcgg cgcccggcgg
     4261 gtggatggcc agctggcgcg tgctgccgcc gccgttcttc cacgggctcg cgggcagccg
     4321 gtccagctgg atgagtcgtg cgggcatgcc gttcgccttt ctgattaatg tatatacaaa
     4381 tgaagttttt tcgctgatcc ccgtgctgcc tggtctccag cgcattcttt cgttccgtcg
     4441 agcgttccgt tgagcgtggc ggcagccggc gagggttgac ctgggagcgc ttcggcttta
     4501 aatgtatata cattgatgcg agaggacaaa ccgatgcccc tgtctgattc cccacgtcgc
     4561 ctgtggcgcg aggtcacggt gttcgacgga ctgcagcagc tgcccgagcc catggcggtg
     4621 ctggtggatg gcgagcaggt cgccggcctg tggcctgagc gcgacttcgc cccggccctg
     4681 gcctccggcg ccgaagaggc tgggcgcggc ggggtgatga ctcccggtct ggtcgattgc
     4741 catacccatc tggtctacgc cggcgaccgt gccggtgaat tcgagcagcg cctggaaggg
     4801 gtgagctacg aggagatcgc ccgcgccggc ggcggcatcc tcagcaccgt gcgcgccacc
     4861 cgcgc
//
LOCUS       DATIHC010000413         1727 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_40886, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000413 DATIHC010000000
VERSION     DATIHC010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1727
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40886"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1107)
                     /locus_tag="VLF16_06635"
     CDS             complement(<1..1107)
                     /locus_tag="VLF16_06635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003110350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HSX70592.1"
                     /translation="MRVLHFFKTYLPETVGGIEQVIYQLCESTRPLGVDSQVLTLSAD
                     RDPAELMVGTHKVHRARLDMQVASTGFSLSALGRLKALAREADLVHYHFPWPFMDLLH
                     FAARIDKPFVVSYHSDIVRQKYLLQLYRPLMHRFLSRAECIIAASPNYLDSSEVLQGF
                     RDKTQVIPYGLDEAAYPQPSEARLEHWRSRLGARFFLFVGVLRYYKGLHILLEAMTDT
                     GYPLVIAGAGPMEQELRSQAAALKLSNVHFVGRVDEEDKCALLQLCSAFVFPSHLRSE
                     AFGISLLEAAMYGKPLVSCEIGSGTSYINIHGETGLVVPPDDPMAFREAMRALWEQPR
                     MAQQMGEKAAIRYAQLFTAQTMGRQVAQVYREVLD"
     gene            complement(1107..>1727)
                     /locus_tag="VLF16_06640"
     CDS             complement(1107..>1727)
                     /locus_tag="VLF16_06640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007924567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HSX70593.1"
                     /translation="PLGYAERFRPRTDEELAPLLATMGLLPRQYLLCVGTLEPRKNLE
                     LALSGYIALPEAIRNRYPLLLAGMSGWHTERLQGSLRMALSTGQVRLLGYQPDEQLAE
                     LLAGARMLLFPSLYEGFGLPVLEAMASGTPVVLGRNSALPGVAGEAGCYIEDPDPQVY
                     AQVIRRLIEDQSLWQRLREAGLERARLFSWRRCAQITAGVYREVIG"
BASE COUNT          362 a          565 c          511 g          289 t
ORIGIN      
        1 atctagcact tctcggtaaa cctgagccac ctgccgcccc atcgtctgcg cagtgaacag
       61 ttgggcatag cgtatggcgg ccttctctcc catctgttgc gccatccgag gttgttccca
      121 aagggcacgc atggcctcgc gaaaggccat agggtcgtcc ggaggcacca ccagaccggt
      181 ctctccatga atattgatgt agctggtgcc actaccgatt tcacaggaga ccagaggctt
      241 gccatacatc gcagcctcga gcagggagat accgaaggcc tcggagcgca agtgcgacgg
      301 gaagacaaag gcactgcata gctgcagcaa ggcgcatttg tcctcctcgt cgacccggcc
      361 gacgaagtgg acattgctca gcttcagcgc ggctgcctgg ctgcgcaact cctgctccat
      421 ggggccggcg ccggcaatga ccagcggata ccctgtatcc gtcatcgcct ccagcaggat
      481 gtgcagcccc ttgtagtagc gcagcacacc cacgaacagg aagaagcgcg cgcccagccg
      541 actccgccaa tgctccaggc gggcctcgga tggctgcggg taggcagctt catccaggcc
      601 gtaagggatc acctgagtct tgtcacggaa gccttgcagt acctcgctac tatcgaggta
      661 gttgggcgac gcggcaatga tgcactcggc cctggagaga aagcggtgca tcaacgggcg
      721 gtataactgc agcagatact tctggcgcac gatgtccgag tggtaggaaa ccacgaaggg
      781 cttgtctatt cgtgcggcaa aatgcagcag gtccatgaat ggccagggga agtggtaatg
      841 caccaaatcc gcctcacggg ccaaagcctt gaggcgtccc agtgccgata acgagaagcc
      901 ggtcgacgcc acctgcatat cgagcctggc ccgatggacc ttgtgcgtgc cgaccatcag
      961 ctcggccgga tcgcgatccg cactgagcgt cagcacctgg ctatccacac cgaggggccg
     1021 ggtgctttcg cacagctggt agatcacctg ctcgatgccg cctacggtct ccggcaggta
     1081 ggtcttgaag aaatgcagta ctcgcactaa ccaattacct cgcggtacac accagcggtg
     1141 atctgcgcgc agcgccgcca tgaaaacaat cgggcccgtt ccaggccggc ttcccgcaat
     1201 cgctgccaga gcgactgatc ctcgatcagc cgccgaatga cctgcgcata gacctgcgga
     1261 tccggatcct cgatatagca acctgcctcg cccgccactc ccggcagggc ggaattccgc
     1321 ccgagcacca ccggcgtgcc gctggccatc gcctccagca ccggcaagcc gaaaccttca
     1381 tacagagaag ggaacaacaa catgcgcgcg cctgccagca gctcggccag ctgctcgtcc
     1441 ggctgatagc cgagcaggcg cacctgaccc gtggacaatg ccatacgcaa gctgccctgg
     1501 agccgctcgg tgtgccaccc cgacataccc gcgagcagca acgggtagcg gttgcgaatc
     1561 gcctcgggta gcgcaatgta gccgctcagc gccagctcga ggttcttgcg cggttctagg
     1621 gtaccgacac agagcagata ctggcggggc agaagcccca tcgtcgccaa cagcggcgcc
     1681 agctcttcat ccgtccgtgg ccggaaccgt tcggcgtaac cgagagg
//
LOCUS       DATIHC010000414         2891 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43162, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000414 DATIHC010000000
VERSION     DATIHC010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2891)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2891)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2891
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43162"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..733)
                     /locus_tag="VLF16_06645"
     CDS             complement(<1..733)
                     /locus_tag="VLF16_06645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017522198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HSX70594.1"
                     /translation="MQPDFWDDKRPAGVANQLDFNHYRSVVEVFERSCKKFADRPAFS
                     NLGVTLTYAELERYSAAFAAWLQKNTDLKPGDRIAVQMPNVLQYPIAVFGAMRAGLIV
                     VNTNPLYTVREMRHQFNDAGVRALVYLNTFGKSVQEVLPDTQIEYLIEARLGDMLPSL
                     KGLLVNTVVKHVKKMVPDYELPQAVSFKDALRAGKGHSFQPAKLSLEDVAVLQYTGGT
                     TGVAKGAMLTHGNLVANMQQVHNCLQ"
     gene            1033..1992
                     /locus_tag="VLF16_06650"
     CDS             1033..1992
                     /locus_tag="VLF16_06650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010490530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipase"
                     /protein_id="HSX70595.1"
                     /translation="MMQHEFRIDASDGTALHAYHWPTEAPPKALLMIAHGMAEHAGRY
                     ARLAESLNAAGYGVYAIDQRGHGLTAQHGVLGHYADEGGWSKVVGDLASLNHHIRQQH
                     PQAPIFLLGHSMGSYIGMAYLMQHSCSLQGAILSGSNYQPLPLYKAASLITRLERWRL
                     GPTGRSRLIDFLSFGSFNKAFKPNRTGFDWLSRDPVEVDRYVTDPLCGFVCTTQLWCD
                     LMDGFQQITPVRNLAQIDADLPLLVIGGDRDPVSQSKRLGHLAGALRTAGIRDVELKI
                     YPDARHELLNESNRDEVTHYLRDWLERTLVRSRSCATPIEEPV"
     gene            1989..2459
                     /locus_tag="VLF16_06655"
     CDS             1989..2459
                     /locus_tag="VLF16_06655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017702716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HSX70596.1"
                     /translation="MTQVTNIPYDKLEVGQQASLVKTVEERDVQLFAAVSGDNNPVHL
                     DAAFAAETMFKERIAHGMFSGALISAAIACNLPGPGTIYLGQQLKFTRPVKLGDTLTV
                     QLEVLEKLPKGRVRLATRVFNQNDEQVVDGEAEVLAPRAEQTLDMPEMPKVTVG"
     gene            complement(2790..>2891)
                     /locus_tag="VLF16_06660"
     CDS             complement(2790..>2891)
                     /locus_tag="VLF16_06660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012051434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HSX70597.1"
                     /translation="RLAQRIPVRIELDEVPKDLPLSAGMTASVRVVE"
BASE COUNT          498 a         1017 c          910 g          466 t
ORIGIN      
        1 gctgcaggca gttgtgcacc tgctgcatgt tggccaccag gttgccgtgg gtgagcatcg
       61 cgcccttggc cacgccggtg gtgccgccgg tgtactgcag cacggcgacg tcctccaggc
      121 tcagtttggc cggctggaag gaatggccct tgccggcgcg cagtgcgtcc ttgaaggaca
      181 ccgcctgagg cagctcgtag tcgggcacca tcttcttcac gtgcttgacc acggtgttca
      241 ccagcaggcc cttcaggctc ggcagcatgt cgcccaggcg cgcctcgatc aggtattcga
      301 tctgggtatc gggcagcact tcctgcaccg atttgccgaa ggtattgagg tacaccaatg
      361 cgcgcacacc ggcgtcgttg aactggtggc gcatctcgcg cacggtgtac agcgggttgg
      421 tgttgaccac gatgagcccg gcgcgcatgg cgccgaacac ggcgatgggg tactgcagga
      481 cgttgggcat ctgcacggcg atgcgatcgc cgggcttgag gtcggtgttc ttctgcagcc
      541 aggcggcgaa tgccgcggag tagcgctcca gctcggcgta ggtcagcgtg acgccgaggt
      601 tgctgaaggc ggggcggtcc gcgaacttct tgcaggagcg ctcgaacacc tcgaccaccg
      661 agcgatagtg gttgaagtcg agctggttgg cgacgccggc cgggcgcttg tcgtcccaga
      721 agtcaggttg cattgttctt atccccttga cctgaaatga gctaaccgga cgcctgcgaa
      781 tgcgaccggg ctgcgccgga acttagcagc tcgccggcac gaggcaaata gccccggggc
      841 gcacattgac cgcatgaatc tttaccatgc ttgtccggcg attgccgggg accgcccccg
      901 agcctctggc ccgggcctgg cgcccgagca tacccaggcc ccgcaggcgc catgggccgt
      961 ggcgtcggcg gccctttgcg atgccgcgac ggccatgcac aatgccccac tccaccgggc
     1021 gcaaggatcg ccatgatgca gcacgaattc cggatcgacg ccagcgacgg caccgccctg
     1081 cacgcctacc actggccgac ggaggcaccg cccaaggcgt tgctgatgat cgcccacggc
     1141 atggccgaac acgccgggcg ctacgcgcgt ctggccgagt cgctcaacgc cgccggctac
     1201 ggcgtctacg ccatcgacca gcgcggccac ggcctgaccg cgcagcacgg cgtgctcggc
     1261 cattacgccg acgagggcgg ctggagcaag gtggtcggcg acctcgccag cctcaaccac
     1321 cacatccgcc agcagcatcc gcaggcaccg atcttcctgc tcggccacag catgggcagc
     1381 tacatcggca tggcttatct gatgcagcac agctgcagcc tgcagggcgc gatcctgtcc
     1441 ggctccaact accagccact gccgctgtac aaggccgcca gcctgatcac ccgcctcgag
     1501 cgctggcgcc tgggcccgac cgggcgcagc aggctgatcg acttcctctc cttcggctcc
     1561 ttcaacaagg ccttcaagcc caaccgcacc ggcttcgact ggctcagccg cgacccggtc
     1621 gaggtggaca ggtacgtgac cgacccgctg tgcggcttcg tctgtaccac ccagctgtgg
     1681 tgcgacctga tggacggctt ccagcagatc acgcccgtgc gcaacctggc gcagatcgac
     1741 gccgacctgc cgctgctggt gatcggcggc gaccgcgacc cggtcagcca gagcaagcgc
     1801 ctcggccatc tggccggcgc cctgcgcacc gccggtatcc gcgacgtcga actgaagatc
     1861 taccccgacg cccgtcacga gctgctcaac gagagcaacc gcgacgaggt cacccattat
     1921 ctgcgcgact ggctggagcg gaccctggtc cgcagccgct cgtgcgccac ccccatcgag
     1981 gaacccgtat gacccaggtc accaacatcc cctacgacaa gctcgaagtc ggccagcagg
     2041 ccagcctggt gaagaccgtg gaagagcgcg acgtgcagct gttcgccgcc gtctccggcg
     2101 acaacaaccc ggtgcacctg gatgccgcct tcgccgccga aaccatgttc aaggagcgca
     2161 tcgcccacgg catgttcagc ggcgcgctga tcagcgcggc catcgcctgc aacctgccgg
     2221 gcccgggcac catctacctc ggccagcagc tcaagttcac ccgcccggtg aagctcggcg
     2281 acaccctgac cgtgcagctg gaagtgctgg aaaagctgcc caagggccgc gtccgcctgg
     2341 ccacccgggt gttcaaccag aacgacgagc aggtggtgga cggcgaggcc gaagtcctgg
     2401 ccccgcgcgc cgagcagacc ctggatatgc cggagatgcc gaaagtcacg gttggctgag
     2461 cagcatctct gcgcggctga ctccgtgatt acccctctcc ctctgggaga gggttggggt
     2521 gagggaaaaa agtagcgccc cattctggtt tcgacgccac ttcatgctcg ccatcatccg
     2581 tacattccaa agtagcccgg atgcaatccg gggcggagtt gcctgcttcc cggattgcat
     2641 ccgggctacg acgctgaata tgccggagat gccgaaggtc accgtcggtt gaccctctcg
     2701 tagggtgcgc cgcgcgcacc aaaggccgca tgccgtgcca cacggtgcgc acggcgcacc
     2761 ctacggctcg aacgcgggtt tcacccgccc tactccacca ccctgacgct cgccgtcatc
     2821 cccgcactca gcggcaggtc cttcggcacc tcgtccagtt cgatacgcac cgggatgcgc
     2881 tgggccaggc g
//
LOCUS       DATIHC010000415         5127 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29152, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000415 DATIHC010000000
VERSION     DATIHC010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5127
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29152"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            128..601
                     /gene="rsd"
                     /locus_tag="VLF16_06665"
     CDS             128..601
                     /gene="rsd"
                     /locus_tag="VLF16_06665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003120370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma D regulator"
                     /protein_id="HSX70598.1"
                     /translation="MLESCQNAQERWGGVHQLIDRWLQERHELVSAFGALCDKPQASS
                     FGEDVQRFCEILVDYVSAGHFEVYEQLTVEAKAFGDQRGLELAKQIYPRIEAITEVAL
                     AFNDRCDSGDCRDHASLNGELKRLGQLLHERFELEDCLIEVLHNAHQQQATATPL"
     gene            complement(654..1292)
                     /locus_tag="VLF16_06670"
     CDS             complement(654..1292)
                     /locus_tag="VLF16_06670"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003255886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HSX70599.1"
                     /translation="MWRFSLLLLCLLPALSSAASEEEDLAYSLGVRLGERLHDEVPDL
                     PLEALLQGLRQAYRDEPLRLPQERVDALLDMHEQRIAQSRDERQQAAEGRFLAREKSR
                     HGVRELEGGVLVSELRAGSGRQPQANSRVKVSYRGELADGSLFDQSEGPQWFRLRALI
                     PGWQTALRQMLVGARWRIVIPAEQAYGEEGAGDLIPPNAPLVFEVELLDVAD"
     gene            1409..2473
                     /locus_tag="VLF16_06675"
     CDS             1409..2473
                     /locus_tag="VLF16_06675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011666786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlgP family protein"
                     /protein_id="HSX70600.1"
                     /translation="MPANNKKSVRTPLHLLQQLSGSLLEHLEKACTQALVDAEGMLTK
                     LEKQRGKAQEKLLDTRAKLQSAAKAGKVKAQDKAKAAVAELEDLLDGLKTRQAETRGY
                     IAQLKRDAQESMKLAQGVGKVREAAAKALDSRAAAAKPAAKPAAKPVAKKAAAKPATQ
                     AAAKPASRTTATKPAAAKAPVRAVAKPAAKPATKTAAKPAAKKPASAAKPAAAKPAAK
                     PAAKPAAKAPAKAASKPAAKPAAKPATQAAAKPATKAAAKPAAKAPAKAPAKPAATKP
                     AAKPAAKPAAKPATKTAAKPAAKPAAKKPVAAKPAAAKPAAKPAAKPASTPAAAKPAA
                     PAGSATPAPTTGNGSATPSA"
     gene            complement(2470..2913)
                     /locus_tag="VLF16_06680"
     CDS             complement(2470..2913)
                     /locus_tag="VLF16_06680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020306700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02444 family protein"
                     /protein_id="HSX70601.1"
                     /translation="MPTDLWSFALACYARPGVEATCLRLQDDGADVCLLLCALWLEWR
                     RVASSAERLAQLQEIAEPWQRQVVQPLRELRRAWKAAARHEPQLAKLRERIKVLELEA
                     ERELLERLDQATRKWQATDDAVAWLEQLVEDRGARELLRAAAVPT"
     gene            2964..4874
                     /locus_tag="VLF16_06685"
     CDS             2964..4874
                     /locus_tag="VLF16_06685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSX70602.1"
                     /translation="MIRLLNLTLQRGPQRLLEGAELTLHAGQKVGLIGANGAGKSSLF
                     ALLRGELGPDAGDCQLPADWRIAHMRQEVDNLERMATDYVLDGDVHLRAIQAELARAE
                     AAHDGAAIARLHTELDNAQGYTADARARKLLAGLGFTTEQMDRRVGDFSGGWRMRLNL
                     AQALMCPSELLLLDEPTNHLDLDAILWLEEWLKGYPGTLLLISHDRDFLDAVVDHIAH
                     LEQQKLTLYRGGYSAFERTRVERLAQQQQAYEKQQAQRAHMEDFIRRFKAKASKARQA
                     QSRIKALERLEELAPAHVDSPFDFAFREADKVSSPLLNLSEARLGYGDKTVLDKVKLS
                     LPPGARIGLLGPNGAGKSTLIKTLSGDLEVLGGNLARGENLAIGYFAQHQLDSLDAKA
                     SPLLHLQRIAPGEREQVLRDFLGGFDFRGARCDEVVVNFSGGEKARLALALIAWQKPN
                     LLLLDEPTNHLDLEMRLALTMALQDFAGAVLVVSHDRHLLKSTTDEFMLVADGRIQPF
                     EGDLDDYARWLVDYRARQQPQATAAPAADRTDKRAQRQAAAALRQQLAPHRKQADKLE
                     QELGKVQEKLAGVEQKLGDSGLYEGARKDELRELLAEQARLKGSEAELEEAWLLALET
                     LEELQRQLEEAD"
     gene            4874..>5127
                     /locus_tag="VLF16_06690"
     CDS             4874..>5127
                     /locus_tag="VLF16_06690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HSX70603.1"
                     /translation="MEELELLAAWREPLTVAAQVLLILILAWLAQRLVSRGITGLGSR
                     YSLLPAEILVPLRGLLRWIIIGSAMMLVLERLGVSAEVLWT"
BASE COUNT          919 a         1849 c         1642 g          717 t
ORIGIN      
        1 ctctggccca gcgcctcgtc attaattcgc cgttttcgac cgggcgcttc ccgagactcc
       61 gcgagccgac aataaaatgt ctcggggctg gcgtattcgg cattcaccag taagggagtg
      121 agacatcatg ctcgagagct gccagaacgc ccaggaacgc tggggtggtg tacaccagct
      181 gatcgaccgc tggctgcagg agcgccacga gctggtaagc gctttcgggg cactctgcga
      241 caagccgcag gcgtcctcct tcggcgagga tgtgcagcgc ttctgcgaga tcctggtcga
      301 ctacgtttcg gccggtcact tcgaggtcta cgagcagctc accgtcgagg ccaaggcctt
      361 cggcgaccag cgtggtctgg agctggccaa gcagatctac ccgcgcatcg aggccatcac
      421 cgaagtggcg ctggccttca acgaccgctg cgacagcggc gactgccgcg accacgcttc
      481 cctcaacggt gaactcaagc gcctgggcca gctgctgcac gagcgcttcg agctggaaga
      541 ctgcctgatc gaagtgttgc acaacgctca ccagcagcag gccaccgcga cgccgctctg
      601 agcgtgaccc ggatacgaaa aagccgcctc atcaggcggc tttttcatgc cgctcagtcg
      661 gcgacgtcga gcagctccac ctcgaatacc aggggcgcgt tgggcggaat caggtcgccg
      721 gcgccttcct cgccataggc ctgctcggcg ggaatcacga tgcgccagcg cgcacccacg
      781 agcatctgtc gcagcgccgt ctgccagccg ggaatcagcg cgcgcaggcg gaaccattgc
      841 ggcccctcgc tctgatcgaa caggctgccg tcggccagct cgccgcggta gctcaccttc
      901 acccggctgt tcgcctgcgg ctggcgaccg ctgcccgcgc gcagctcgct caccagcacg
      961 ccgccttcca gttcgcgcac gccatggcgg gatttttccc gggcgagaaa gcgtccctcg
     1021 gcggcctgct gacgctcgtc gcggctctgt gcgatgcgct gctcgtgcat gtcgagcagg
     1081 gcgtcgacgc gctcctgcgg cagacgtaag ggctcatcgc gataggcctg acgcaggccc
     1141 tggagcagcg cttcgagtgg caggtccggg acctcgtcgt gcagtcgctc gccgagccgg
     1201 acgcccaggc tgtaggccag gtcttcctcc tcgctggccg ccgacgatag cgcgggtagc
     1261 agacacagga gcaacaacga gaagcgccac atgaaaatat ctccgaaaaa atttgccggt
     1321 gattatgcct gccgccgccc ggggtgctag cgaccgacga gtcggccgtc tagtatgggg
     1381 atcaccaatg tccgttagga ggcacgccat gccggccaac aacaagaagt ctgtacgcac
     1441 tcctctgcat ctgctccagc aactctccgg tagcctgctc gaacatttgg agaaggcctg
     1501 cacgcaagca ctggtcgacg ccgaaggcat gctgaccaaa ctggaaaagc agcgcggcaa
     1561 ggctcaggaa aaactgctcg acacccgcgc caagttgcag agcgcggcca aggccggcaa
     1621 ggtcaaggcg caggacaagg ccaaggccgc cgtcgccgaa ctggaagacc tgctcgacgg
     1681 actcaagacc cgtcaggccg aaacccgcgg ctacatcgcc cagctcaagc gcgacgccca
     1741 ggaaagcatg aagctggccc agggcgtggg caaggtacgc gaggcggccg ccaaggcgct
     1801 cgacagtcgc gccgctgccg ccaagcccgc cgcgaaaccg gcggccaaac cggtggctaa
     1861 gaaggccgct gccaagccgg cgacccaggc tgcggcgaag cccgccagcc gcacaactgc
     1921 gaccaagcct gccgctgcca aggcgccggt aagggcagtc gccaagcccg cggccaaacc
     1981 cgccaccaag accgccgcca agccggcggc gaagaagccg gccagcgctg ccaagcccgc
     2041 ggccgccaag cctgctgcaa aaccggctgc caagccggcg gccaaggccc cggccaaagc
     2101 ggccagcaaa cctgccgcca agccggccgc caaacccgcc acccaggccg cggcaaagcc
     2161 cgctaccaag gctgctgcca agccggcagc caaggcgcct gccaaggctc ctgcaaagcc
     2221 cgccgcaacc aagccggccg ccaagcctgc tgcaaaaccg gctgccaagc cggcgaccaa
     2281 aaccgctgcg aagcccgccg ccaaaccggc tgccaagaag cctgtcgccg ccaagcccgc
     2341 cgccgcgaaa ccggctgcga agcctgcggc gaaaccggcc agcactcctg cagcggccaa
     2401 gcctgcagcg cctgccggca gcgccactcc agcgccgact accggcaacg gcagcgctac
     2461 tccctccgct taagtcggca cggccgcggc gcgcagcagc tcgcgcgcgc cgcggtcttc
     2521 gaccagctgc tccaaccagg ccacggcatc gtccgtggcc tgccatttcc gggtcgcctg
     2581 atccagtcgt tcgagcagtt cgcgctcggc ctccagctcc agcaccttga tccgttcgcg
     2641 cagcttcgcc agctgcggct catgccgagc cgccgccttc caggcccgcc gcaattcccg
     2701 caacggttgc accacctggc gttgccaggg ctcggcaatc tcctgcaact gggcgagtcg
     2761 ttcggcgctg gaggctaccc gccgccactc tagccagagg gcgcagagca gcaggcagac
     2821 atccgcaccg tcgtcctgca ggcgcaggca ggtcgcctcc acgccggggc gggcgtagca
     2881 ggccagggcg aaactccaca ggtcagtcgg catgcggctc tccgggcggc agcgggggga
     2941 agctggtaga ctccgcggcc attatgatcc gactcctgaa cctcactcta cagcgcggtc
     3001 cgcagcgcct gctcgaaggc gccgaactga ccctgcacgc cggccagaag gtcggcctca
     3061 tcggcgccaa cggtgccggc aaatccagcc tgttcgcgct gctgcgcggc gagctcggtc
     3121 ccgacgccgg cgactgccag ctgccggccg actggcgcat cgcccacatg cgccaggagg
     3181 tcgacaacct cgagcggatg gcgacggact acgtgctcga cggtgacgtc cacctgcgcg
     3241 ccatccaggc cgagctggcc cgcgccgagg cggcccatga cggcgccgcc atcgcccggt
     3301 tgcacaccga gctggacaat gcccagggct ataccgccga tgcccgcgca cgcaagctgc
     3361 tggccggcct cggcttcacc accgagcaga tggaccgccg cgtcggtgac ttctccggtg
     3421 gctggcgcat gcgcctgaac ctggcccagg cgctgatgtg tccgtccgaa ctgctgctgc
     3481 tcgacgagcc gaccaaccac ctcgacctcg acgccatcct ctggctggag gagtggctca
     3541 agggctatcc cggcaccctg ctgctgatct cccacgaccg tgacttcctc gatgccgtgg
     3601 tcgaccacat cgcgcatctg gagcagcaga agctgaccct ctaccgcggc ggttactcgg
     3661 ccttcgagcg cacccgcgtc gagcgcctgg cacagcagca gcaggcctac gagaagcagc
     3721 aggcgcagcg tgcgcacatg gaagacttca tccgtcgctt caaggccaag gccagcaagg
     3781 cccgccaggc gcagagccgg atcaaggccc tggaacgcct ggaggagctg gcgccggccc
     3841 acgtcgattc gcccttcgac ttcgccttcc gcgaggcgga caaggtctcc agtccgctgc
     3901 tcaatctgtc cgaggcgcgt ctgggctacg gcgacaagac ggtgctggac aaggtcaagc
     3961 tgagcctccc gcccggcgcg cgcatcggcc tgctcggccc caacggcgcc ggcaagtcga
     4021 cactgatcaa gaccctgtcc ggcgacctcg aggtgctcgg cggcaatctg gcgcgcggcg
     4081 aaaacctggc catcggctac ttcgcccagc accagctcga ctcgctcgac gccaaggcca
     4141 gtccgctgct gcacctgcag cgcatcgccc cgggcgaacg cgagcaggtc ctgcgagact
     4201 tcctcggcgg cttcgacttc cgcggcgcgc gctgcgacga agtggtggtc aacttctccg
     4261 gtggcgagaa agcacgcctg gccctggcat tgatcgcctg gcagaagcct aacctgctgc
     4321 tgctcgacga accgaccaac caccttgatc tcgagatgcg cctggccctg accatggccc
     4381 tgcaggactt cgccggcgcc gtgctggtgg tgtcccacga tcgccatctg ctcaagagca
     4441 ccaccgacga gttcatgctg gtcgccgacg ggcgcatcca gccgttcgag ggcgacctcg
     4501 acgactacgc ccgctggctg gtcgactacc gggctcgtca gcagccgcag gcgactgccg
     4561 ccccggccgc cgaccggacc gacaagcgcg cccagcgcca ggccgccgcc gccctgcgcc
     4621 agcagctggc gccgcacagg aagcaggccg ataaacttga gcaggagctg ggcaaggtcc
     4681 aggaaaagct cgccggcgtc gaacagaagc tcggcgacag cggcctgtac gagggcgcgc
     4741 gcaaggacga actgcgtgaa ctgctggccg agcaggcgcg tctgaagggt tccgaggccg
     4801 agctggaaga ggcctggctg ctggctctgg agaccctgga ggagctgcag cgacaactgg
     4861 aggaggccga ttgatggaag agctcgagct gctcgccgcc tggcgcgagc cgctgaccgt
     4921 ggcggctcag gtcctgctga tcctgatcct cgcgtggctg gcgcagcgcc tggtcagccg
     4981 cggcatcacc gggctgggct cgcgttacag cctgctgccg gcggagattc tggtgccgct
     5041 gcgcgggctg ttgcgctgga tcatcatcgg cagcgcgatg atgctggtgc tggaacgcct
     5101 gggtgtgtcg gccgaggtgt tgtggac
//
LOCUS       DATIHC010000416         1525 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33861, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000416 DATIHC010000000
VERSION     DATIHC010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1525
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33861"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1152
                     /locus_tag="VLF16_06695"
     CDS             <1..1152
                     /locus_tag="VLF16_06695"
                     /inference="COORDINATES: protein motif:HMM:NF016357.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0047355 - CDP-glycerol
                     glycerophosphotransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HSX70604.1"
                     /translation="VKGLPMLKYFAAAPVAKLAGALQPNKAIWLMDERIASSAEDNGY
                     FLFKYLRETYPQLPVFYVLKRNSPHWGIVAPLGNVVAQYSWKHAYLLWRARVMLSTDS
                     FRGLDYPSESLPRLRRKTLNVFLQHGVAGNKTMTYTRKNYPYFSQVIVSNSIEQAFFS
                     GHYGFTPKQVKLTGIARLDALAPRRGAERSRKILVAPTWRRWLKGQEQIQASRYYHAW
                     NSFLASARLAELLERHQMKLYFRPHFNMMHFIDEFEKGSPRVHVIRDLDQPLHHLIRE
                     ADLLITDYSSVMYDFFYQEKPVLGYMFDRHEWEVQPPGPPHLDYERDLALELVTTEDA
                     LLQQLQQCLEGGCEMSADKRGRLDKLFSHRDDGNCERIYQAVVEELAQQ"
     gene            1184..>1525
                     /locus_tag="VLF16_06700"
     CDS             1184..>1525
                     /locus_tag="VLF16_06700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70605.1"
                     /translation="MLQLLKDLRHYHHALVTLFSVNVKTTVASARLGWLWWFLDPLIM
                     MAIYYFIIRVVFQRGGENYHLFVLCGIVAWQFFARSLTAAVTAISKNRGIIRQTSTPM
                     GLLIAVPCAVQL"
BASE COUNT          284 a          462 c          472 g          307 t
ORIGIN      
        1 gtcaagggcc tgccgatgct caagtacttc gcggcggcgc cggtggccaa gctggccggg
       61 gcgttgcagc cgaacaaggc aatctggctg atggacgagc ggattgccag cagtgccgag
      121 gacaacggct acttcttgtt caagtacctg cgcgaaacct acccgcaact gccggtgttc
      181 tacgtgctca agcgcaattc gccgcactgg ggcatcgtgg cgccgctggg caacgtggtg
      241 gcgcagtact cctggaagca cgcctatctg ctgtggcgcg cgcgggttat gctgtcaacc
      301 gacagtttcc gtggcctgga ctatccgagc gagtcactgc cgcgcctgcg ccgcaagact
      361 ctgaatgtgt tcctgcagca tggcgtggcc ggcaacaaga ccatgaccta cacacggaag
      421 aactatccct acttctcgca ggtgatcgtt tccaacagca tcgaacaggc gtttttcagt
      481 ggtcactatg gctttacgcc aaagcaggtg aagctcaccg gtatcgcccg gctggatgcc
      541 ctggcgcctc ggcgcggcgc cgagcgctcg cgcaagattc tggtggcgcc cacctggcgg
      601 cgctggctca aggggcagga gcagattcag gccagccgct actaccacgc ctggaacagc
      661 ttcctcgcca gcgcgcgtct ggccgaactg ctggagcggc accagatgaa gctgtatttc
      721 cgcccgcatt tcaacatgat gcatttcatt gacgaattcg agaaaggttc tccgcgggtt
      781 catgtgatcc gcgatctcga tcagccgctg catcacctga ttcgcgaggc ggatttgctg
      841 atcaccgatt actccagcgt gatgtacgac ttcttctatc aggagaagcc ggtgctgggc
      901 tacatgttcg accgtcacga gtgggaggtg cagccaccgg ggccgccgca cctggactac
      961 gagcgtgatc tggcgctgga actggtcacc accgaggacg ccttgttgca gcaactgcag
     1021 cagtgcctgg agggtggctg cgagatgtct gccgacaagc gcggtcgtct agacaagctg
     1081 ttcagccacc gcgacgacgg caattgcgag cgcatctacc aggctgtggt cgaggaactg
     1141 gctcagcaat gaacagcaca cttagaaagg gcaggggccg ctgatgctgc aactgctcaa
     1201 ggatctgcgg cactaccacc atgccctggt aacgctgttc tcggtcaacg tgaagaccac
     1261 ggttgcctcg gcccgcctgg gttggctgtg gtggtttctc gacccgttga tcatgatggc
     1321 gatctactac ttcatcatcc gcgtggtgtt tcagcgcggg ggggagaact accacctgtt
     1381 cgtgctgtgc ggcatcgtcg cctggcagtt cttcgcacgc tccttgaccg ctgcggtcac
     1441 ggcgatcagc aagaaccgcg gcatcatccg ccagaccagt acgccgatgg gcctgttgat
     1501 cgcggtgccc tgtgcggtgc agctg
//
LOCUS       DATIHC010000417         2039 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33882, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000417 DATIHC010000000
VERSION     DATIHC010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2039)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2039)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2039
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33882"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1129)
                     /locus_tag="VLF16_06705"
     CDS             complement(<1..1129)
                     /locus_tag="VLF16_06705"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013972149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase family protein"
                     /protein_id="HSX70606.1"
                     /translation="MTSTFPDLLSEVRTFRAAHPDVRYVELICLDIPGHFYGKRYPLD
                     MLEKVAAGGPLKLPQNCVLLGAQGGLHPIGDYCFNDGDPDAPRRLIPGTLKPVRWEKQ
                     PLGQMLISSDGTEAPIEFEPREVLARVLKRLEARGIRPVVAFELEFYLFDRKLDNGLP
                     RFPRDPLTDDEDDQPNMHIERLSRFSDVLHEMVEAAQEQDVEANVITAEIGPGQFEIN
                     FAHCDDGLRAADQAALFCRSTRGVAMKHGYRASFMSKPYLDAPGSGMHVHVSLYDQAG
                     NNLLDGDGQRPLRHAVAGCLELLPHCMPIFAPNHNAYRRYGSRVNAASQASWGFEDRD
                     ACIRIPESDGRNLRIEHRLAGADANPYLVLAAILSGMEHGLD"
     gene            complement(1301..1858)
                     /locus_tag="VLF16_06710"
     CDS             complement(1301..1858)
                     /locus_tag="VLF16_06710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012271450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HSX70607.1"
                     /translation="MDKQEEIEGLAILVRDLRKHKDLTLNELAERIGRSVGFLSQVER
                     GLSRPTVADLTAISEALGVPTTYFYNPGKPRLVPWVTRPDERRTLYYAGGITDVLASP
                     GMSGGFAMLESFLEPGATSGEGHLNDSSEQGGFVLEGELTVWYGDAAEPVTLGPRDSF
                     QLPPHAQFRYANLTDQPTRVLWVFT"
     gene            complement(1933..>2039)
                     /locus_tag="VLF16_06715"
     CDS             complement(1933..>2039)
                     /locus_tag="VLF16_06715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70608.1"
                     /translation="LYQGLDNPRFPGGDRLAAPIEAVGKAWYRLRDLF"
BASE COUNT          312 a          635 c          751 g          341 t
ORIGIN      
        1 ggtccaggcc gtgctccatg ccgctgagga tggccgccag caccaggtag gggttggcat
       61 cggcgccggc caggcggtgt tcgatgcgca ggttcctgcc gtccgactcg gggatacgga
      121 tacacgcgtc gcggtcctcg aagccccagc tggcctggct cgccgcgttg acccgcgaac
      181 cgtagcggcg gtaggcgttg tggttgggcg cgaagatggg catgcagtgc ggcagcagct
      241 ccaggcagcc ggccacggcg tggcgcagcg ggcgctggcc gtcgccgtcg agcaggttgt
      301 tgccggcctg gtcgtacagg ctcacgtgca cgtgcatgcc actgcccggc gcgtccaggt
      361 agggcttgct catgaagctg gcgcggtagc cgtgcttcat cgccacgccg cgggtgctgc
      421 ggcagaacag ggcggcctgg tccgcggcgc gcaggccgtc gtcgcagtgg gcgaagttga
      481 tctcgaactg accggggccg atctcggcgg tgatgacgtt ggcctccacg tcctgctcct
      541 gagccgcctc gaccatctcg tgcagcacgt cggagaagcg cgagaggcgc tcgatgtgca
      601 tgttcggctg gtcgtcttca tcgtcggtca gcgggtcgcg cgggaagcgc ggcaggccgt
      661 tgtccagctt gcggtcgaac aggtagaact ccagctcgaa ggccaccacc gggcggatgc
      721 ctcgcgcctc gagacgcttg agcacacgag ccagcacctc gcgcggctcg aactcgatcg
      781 gcgcctcggt gccgtcggag ctgatcagca tctgccccag cggctgcttc tcccagcgca
      841 ccggcttgag cgtgccgggg atcagacggc gcggggcgtc cgggtcgccg tcgttgaagc
      901 aatagtcgcc gatcgggtgc aggccgccct gggcgccgag cagaacgcag ttctgcggca
      961 gcttgagcgg gccgccggcg gcgaccttct ccagcatgtc gaggggatag cgtttgccgt
     1021 agaagtgccc ggggatgtcc aggcagatca gctcgacgta gcgcacgtcc gggtgggcgg
     1081 cgcggaaggt gcgcacttcg ctgagcaggt cggggaatgt agatgtcacg ttcttgtcct
     1141 tgttttcatc aatacccgtc aaatgcggat cagaaccgtc acgagcgaag gccaggcaag
     1201 gcgcaggctg gcgagggcgc ggagcttaca agtggtaagt gagcagcccg agccagcgtg
     1261 caacgcagcc tggccgagcg cagtaggttc tggccgcatt tcaggtgaag acccagagca
     1321 ctcgggtggg ttgatcggtg aggttggcgt agcggaactg ggcgtgcggt ggcagctgga
     1381 agctgtcgcg cgggccgagg gtgaccggct cggcggcgtc gccgtaccag acggtcagct
     1441 cgccctcgag gacaaagccg ccctgctccg agctgtcgtt caggtggccc tcgccgctgg
     1501 tggcgccggg ctcgaggaag ctctccagca tggcgaagcc gccggacatt cccggcgagg
     1561 ccagcacgtc ggtgatgccg ccggcgtagt acagcgtgcg gcgctcatcc gggcgggtca
     1621 cccaaggcac taggcgcggt ttgcccgggt tgtagaagta ggtggtgggc acgcccagcg
     1681 cttcgctgat ggcggtgagg tcggccacgg tcgggcgcga caggccgcgc tcgacctggg
     1741 acagaaagcc caccgagcgg ccgatgcgtt cggccagctc gttgagcgtc aggtccttgt
     1801 gcttgcgcag atcgcgcacc aggatcgcca ggccttcgat ttcttcctgc ttgtccatga
     1861 cattcctcgc gtagcccgga tgccatccgg ggagggttat ttcggttggc atccaggcta
     1921 gggtaaacgg gctcagaaaa gatcgcgcag gcggtaccag gccttgccca ccgcctcgat
     1981 gggcgcggcc agccggtcgc caccggggaa gcgcgggttg tccaggccct gatacaggc
//
LOCUS       DATIHC010000418         2347 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10511, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000418 DATIHC010000000
VERSION     DATIHC010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2347)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2347)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2347
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10511"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(114..347)
                     /gene="acpP"
                     /locus_tag="VLF16_06720"
     CDS             complement(114..347)
                     /gene="acpP"
                     /locus_tag="VLF16_06720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020582918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HSX70609.1"
                     /translation="MSTIEERVKKIVAEQLGVKEDEVTNSASFVEDLGADSLDTVELV
                     MALEEEFETEIPDEQAEKITTVQEAIDYITAHS"
     gene            complement(528..1271)
                     /gene="fabG"
                     /locus_tag="VLF16_06725"
     CDS             complement(528..1271)
                     /gene="fabG"
                     /locus_tag="VLF16_06725"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004316 - 3-oxoacyl-[acyl-carrier-protein]
                     reductase (NADPH) activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HSX70610.1"
                     /translation="MSLQGKVALVTGASRGIGQAIAFELGRQGAVVIGTATSEAGAAR
                     IGEALKEQGIQGAGLMLNVADSESVDAVLEQIQKDFGAVAILVNNAGITRDNLMLRMK
                     DEEWFDVINTNLNSLFRLSKAVLRGMTKARWGRIVNIGSVVGAMGNAGQANYAAAKAG
                     LEGFSRALAREVGSRAITVNSVAPGFIDTDMTRELPEAQREALLTQIPLGRLGQAEEI
                     AKVVGFLASDGAAYVTGATVPVNGGMYMS"
     gene            complement(1289..2227)
                     /gene="fabD"
                     /locus_tag="VLF16_06730"
     CDS             complement(1289..2227)
                     /gene="fabD"
                     /locus_tag="VLF16_06730"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011335436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HSX70611.1"
                     /translation="MSASLAFVFPGQGSQSLGMLAELGAQQALIRDTFGEASEVLGYD
                     LWALTQQGPEERLNETDKTQPAILTASVALWRLWQAEGGARPAFVAGHSLGEYSALVA
                     AGAIGFRDAVKLVELRGQLMQQAVPAGQGGMAAILGLEDADVLAACAEAEQGDVVSAV
                     NFNAPGQVVIAGSAAAVERAIEACKARGAKRAMPLPVSVPSHCALMRPAAEKFAEAIN
                     GLAWRAPQIALVQNVSAAVPADLDTLKRDLLAQLYSPVRWVESVTYLADQGVGELVEC
                     GPGKVLAGLNKRCVKGINTHSLETPDAFAATRAALV"
BASE COUNT          410 a          757 c          730 g          450 t
ORIGIN      
        1 acactgcaca atcctcttat tcgttgaaac gggtcggccc gataaagaaa aaccgcacgc
       61 cttttgaggg gcagtgcggc ttttcggggc cgaaaaccgg cgattacaag cgcttaggag
      121 tgcgcggtga tgtaatcgat ggcttcctga acggtggtga tcttctcagc ctgctcgtcc
      181 gggatctcgg tctcgaattc ctcttccaga gccatcacca gctcgacggt gtcaagggag
      241 tcggcgccca ggtcttcgac gaaggaagcg ctgttggtca cttcatcttc tttgacgccc
      301 agttgctcgg cgacgatttt cttgacgcgt tcttcgatgg tgctcatgtc ttgttttcac
      361 tcctgatgga aaattccgtg cagctggact gcagtgtata gaaagggttt tctaagtttc
      421 aagccgatta ccggccaccc tctcgaactg ccgtctaccg ccagtcgcac ttttgtaacg
      481 gactttagac tggttctatg acagtttcct gaagaaccga gtcacattca gctcatgtac
      541 ataccgccat tcaccggaac ggttgcaccg gtgacgtaag ccgcgccgtc ggaggccagg
      601 aaaccgacca ccttggcgat ctcttcggcc tggcctagac ggcccagcgg aatctgggtc
      661 agcagcgctt cacgctgggc ttccggcagt tcgcgggtca tgtcggtatc gatgaagccc
      721 ggcgccaccg agttgacggt gatggcgcgc gaacccactt cgcgggccag cgcccggctg
      781 aagccttcca ggccggcctt ggccgccgcg tagttggcct gcccggcatt gcccatggca
      841 ccgaccaccg aaccgatgtt gacgatgcga ccccaacggg ccttggtcat accccgcagc
      901 acggccttgg acaggcggaa cagactgttg aggttggtgt tgatgacgtc gaaccactcc
      961 tcgtccttca tccgcagcat cagattgtcg cgggtgatgc cggcgttatt gaccaggatg
     1021 gccactgcgc caaagtcctt ctggatctgt tccagaacag catccaccga ctcgctgtca
     1081 gccacgttca gcatcaggcc tgcgccctgg atgccctgct ccttgagcgc ctcgccgatg
     1141 cgcgcggcgc cggcttcgct ggtggcggtg ccgattacga cggcgccctg acggcccagt
     1201 tcgaacgcga tggcctgacc gataccacgg ctggcgccgg tgaccagcgc gaccttgcct
     1261 tgcagactca tgattctctc cttgtgactc agaccagcgc cgcacgcgtg gcggcgaagg
     1321 cgtccggggt ttccagactg tgggtattga tgcctttgac gcaccgctta ttgaggccag
     1381 ccagcacttt tccggggccg cattcgacca gttcgccaac gccctggtca gccagatagg
     1441 tcacgctctc cacccagcgc accgggctgt acagctgggc cagcagatcg cgcttgaggg
     1501 tgtcgagatc ggcaggtacg gccgcactca cgttctgcac cagggcgatc tgcggcgccc
     1561 gccaggccag accgttgatc gcctcggcga acttctcggc ggccgggcgc atcagtgcgc
     1621 agtgcgacgg cacgctgacc ggcaacggca tggcgcgttt ggcgccacgc gccttgcagg
     1681 cctcgatggc gcgctcgacg gccgctgcgc taccggcgat caccacctgg ccgggtgcat
     1741 tgaaattgac cgcgctgacc acatcaccct gctcggcttc ggcacaggcc gccagcacgt
     1801 cggcatcttc aagaccgagg atggccgcca taccgccctg cccggccggt acggcctgct
     1861 gcatcaattg gccgcgcagc tcgaccagct tgaccgcgtc gcggaagccg atggcgccgg
     1921 cagcaaccag cgcggagtat tcacccaggc tgtgaccggc gacgaaggcc ggacgcgcgc
     1981 cgccctcggc ctgccacagt cgccacagtg cgacggaggc ggtgaggatg gccggctggg
     2041 tcttgtcggt ttcattcagg cgctcttccg ggccctgctg ggtcagcgcc cagagatcgt
     2101 agccgagcac ctcggaggcc tcgccgaagg tatcgcggat cagcgcctgc tgggcgccga
     2161 gttcggcgag catgccgagc gactgcgaac cttggccagg gaagacaaat gcgagggagg
     2221 cggacatcga aactttccct tatctagtcg gaggaagtgg cgcggccggg ccgagccgaa
     2281 actgcaggtt ggatgaagcg gccgcggctg cggtcacagc gccgtgccac gacgatcagg
     2341 cttggag
//
LOCUS       DATIHC010000419         4435 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_44882, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000419 DATIHC010000000
VERSION     DATIHC010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4435)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4435
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44882"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..319
                     /locus_tag="VLF16_06735"
     CDS             <1..319
                     /locus_tag="VLF16_06735"
                     /inference="COORDINATES: protein motif:HMM:NF024976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type I restriction enzyme HsdR N-terminal
                     domain-containing protein"
                     /protein_id="HSX70612.1"
                     /translation="IFLVIECKGVRTKLSNSVRDQAINYATSLSAPWAVITNGHIWRL
                     YRILPRPGRDPKLIEIFDVALLDADGVSDSDVESLYLLTARALFGGDTEKMSHLIASC
                     AWS"
     gene            718..1905
                     /locus_tag="VLF16_06740"
     CDS             718..1905
                     /locus_tag="VLF16_06740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSX70613.1"
                     /translation="MSLASPHAAPLSRGAVLLIELALALGGFAIGTGEFSIMGLMPEV
                     ARDLGVSEPQVGHVISAYALGVVVGAPVLALLGARLFRRHLLLLLMGCFALGNFASAL
                     APDYGSLMLFRFVAGLPHGAYFGIAMLVAASMAPLHKRAKAVSRVLAGLTIAILIGNP
                     LATWLGQHLSWRYAFALVGLIALVTIVMVALFLPLDRNEERSSPIGELKAFNRAPIWL
                     AMAIGSIGFAGMFCVFSYVAPTLLEVTGAQPGWIPVTLAVFGAGGILGNMTGGWLFDR
                     LRFAAVAWILAWSALVLLLFPLAAQHLASMLLVTFALGTMIALGPALQTHLMDIATGA
                     QTLAAASNHAAFNLANALGPWLGGLAISAGLGWTVTGYIGAVTALLGLALFACAWRVQ
                     QRT"
     gene            1964..2527
                     /locus_tag="VLF16_06745"
     CDS             1964..2527
                     /locus_tag="VLF16_06745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003157057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70614.1"
                     /translation="MSRTLRTALLLFATLCAGPALAKVEIEAAQQKNLGRMLIAKVSE
                     EISPGDYEALLKGLQAHPGKFARKIVLLDSIGGSAAEAMRMGRLLRETGFETLVPSKG
                     VCQGSCIYLLAAGRKKMVRGHVGLHRPHFPAGESAQASRAGMPNNASGYFRDMGVAPA
                     LAADMQAIEPHRMKVLTPAELKRYRLN"
     gene            complement(2547..2768)
                     /locus_tag="VLF16_06750"
     CDS             complement(2547..2768)
                     /locus_tag="VLF16_06750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016492459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70615.1"
                     /translation="MHDPINNQLRSSLDEQIEAFLTKGGEITEVAIGTSGISADHKKA
                     HWSKSQAKKADAKAPRAEAVAEADPALPG"
     gene            3045..3254
                     /locus_tag="VLF16_06755"
     CDS             3045..3254
                     /locus_tag="VLF16_06755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012700418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HSX70616.1"
                     /translation="MANRETGIVKWFNAEKGFGFITPESGADLFVHFRQIEGSGFKSL
                     DEGQRVSFVVAQGQKGPQAEQVQVI"
     gene            3376..3591
                     /locus_tag="VLF16_06760"
     CDS             3376..3591
                     /locus_tag="VLF16_06760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70617.1"
                     /translation="MATGANVDIDQSTLIRTGATLRFYDYGAGEYRSGLATANQPAQG
                     HDGRADRRREERAPPHPRHRELTARAT"
     gene            complement(3613..4356)
                     /locus_tag="VLF16_06765"
     CDS             complement(3613..4356)
                     /locus_tag="VLF16_06765"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSX70618.1"
                     /translation="MNNEFEQRLAVVTGASSGIGLAVCELLLQRGARVLAMSRGLGGL
                     GTLLERYPERLFWYEGDVTREASLQGLAERAAELGEVHYLVPNAGIAKLAPGSDLQAF
                     DEQWRVNGAGALNTFYALKAQLAQPASVVFISTFLRHLGFVGLGAYIATKAALSSLVR
                     SLALEHANEGLRLNLVSPGPTATPIWNSLGLPDDALAGVASEVNARLVDNEFLSSEAV
                     AEVVLFQLSQGARGVYGQDWVVDKGYTLR"
BASE COUNT          724 a         1593 c         1384 g          734 t
ORIGIN      
        1 gatattcctg gtcatcgagt gcaagggcgt taggacgaag ctcagcaaca gcgttcgcga
       61 tcaggcgatc aactacgcca ccagcctgtc cgcgccgtgg gcagtgatca ccaacggtca
      121 catctggcgg ctctatcgca tcctcccgcg ccccggtcga gacccgaagc tgatagagat
      181 tttcgacgtc gcactgctgg atgcagacgg cgtgagcgat agcgatgtcg aaagccttta
      241 cctgctgacg gctcgcgcac tcttcggcgg cgatacggaa aagatgagcc acctcattgc
      301 ctcatgcgca tggagctgac cgagagttac aaggaaacaa acggagtgag cgtcccgctg
      361 gactatgcgg gcacgcgatc cgtaatcgcg gacgcctttg gcgtggaaga tctctagcag
      421 cgctcgtcgg cctgcaccta cgagtgctac tggtaggctg cgcttcggat cggcaccagc
      481 gcaggggcag gcctgaaaaa gctgcaccgg attaaggccc acggtgcgca cagcgcaccc
      541 tacggctgcg cgggattgag gtccacggtg cgcatgcccc cctgcggtag ggtgcgccgt
      601 gcgcaccaac cacccgcgcg gaacgtcaac cgcgcggaac tggctccagc gtaatgcccg
      661 ccccagagcc gctggcgtat aatcgccggc gtttttctcc cgccggcagt cccctccatg
      721 tccctcgcgt ccccacacgc cgcgccgctg tcgcgcggcg ccgtcttgct gatcgaactg
      781 gccctggccc ttggcggctt cgccatcggc accggcgagt tctccatcat ggggctgatg
      841 cccgaggtcg cgcgtgacct gggcgtgagc gaaccccagg tcggccacgt gatcagcgcc
      901 tatgccctgg gcgtagtggt cggcgcgccg gtgctcgccc tgcttggcgc gcggctgttc
      961 cgccggcacc tgctgctcct gctgatgggc tgcttcgccc tcggcaactt cgccagcgcc
     1021 ctggcgccgg actacggctc gctgatgctg ttccgcttcg tcgccggcct gccgcacggc
     1081 gcctatttcg gcatcgccat gctggtggcc gcctcgatgg cgccgctgca caagcgcgcc
     1141 aaggcggtga gccgggtgct ggccgggctg accatcgcca tcctcatcgg caacccgctg
     1201 gccacctggc tcggccagca cctgagctgg cgctacgcct tcgcgctggt ggggctgatc
     1261 gccctggtca ccatcgtcat ggtcgcgctg ttcctgccgc tggaccgcaa cgaggagcgc
     1321 agcagcccga tcggcgaact gaaggccttc aaccgcgcgc ccatctggct ggcgatggcc
     1381 atcggctcca tcggtttcgc cggcatgttc tgcgtgttca gctacgtggc gccgaccctg
     1441 ctggaagtca ccggcgcgca gccggggtgg attcccgtga ccctggccgt gttcggcgcc
     1501 ggcggcattc tcggcaacat gaccggcggc tggctgttcg accgcctgcg cttcgccgcg
     1561 gtggcctgga tcctggcctg gagcgccctg gtgctgctgc tcttcccgct ggccgcgcag
     1621 cacctggcga gcatgctgct ggtgaccttc gccctgggca ccatgatcgc cctgggcccg
     1681 gcgctgcaga cccacctgat ggacatcgcc accggcgcgc agaccctcgc ggcggcgtcc
     1741 aaccacgccg cgttcaacct ggccaacgcc ctcggcccct ggctcggcgg cctggccatc
     1801 agcgccggcc tgggctggac cgtcaccggc tacatcggtg ccgtcaccgc cctgctcggc
     1861 ctggcgttgt tcgcctgcgc ctggcgcgtg cagcagcgca cttgaccggg ccgtggctgc
     1921 gggtatcttc tgcgcccagt cgtagctgga aatccgcagt cccatgagcc gtacccttcg
     1981 caccgccctc ctcctgttcg ccacgctctg cgccggcccc gctctcgcca aggtcgagat
     2041 cgaggccgcg cagcagaaga acctcggccg catgctgatc gccaaggtct cggaagagat
     2101 ttctcccggc gactacgagg cgctgctcaa ggggctgcag gcgcaccccg gcaagttcgc
     2161 ccgcaagatc gtcctgctcg acagcatcgg cggcagcgcg gccgaagcca tgcgcatggg
     2221 gcgcctgctg cgcgaaaccg ggttcgagac gctggtgccg tcgaagggcg tgtgccaggg
     2281 cagctgcatc tacctgctcg ccgccgggcg caagaagatg gtccgcggcc atgtcggcct
     2341 gcaccggccg cacttccccg ccggcgaatc cgcccaggcc agccgcgccg gcatgcccaa
     2401 caacgccagc ggctacttcc gcgacatggg cgtggcgccc gcgctggccg ccgacatgca
     2461 ggccatcgag ccgcaccgca tgaaagtgct caccccggcg gagctgaagc gctaccgcct
     2521 gaactgaagc gcggcgcgcg aggggttcag cccggcaacg ccggatcggc ctccgccaca
     2581 gcctcggcgc gcggggcctt ggcatccgcc ttcttcgcct gggacttgga ccagtgggcc
     2641 ttcttgtggt cggcggagat gccggaagtg ccgatcgcga cttcggtgat ctcgccgccc
     2701 ttggtcagga acgcctcgat ctgctcgtcg agtgaggacc gcagctgatt gttgatcggg
     2761 tcatgcatga cgaggctcct tgcgcgtgag tggaggccca ctatacagac tcgatcccgc
     2821 gccaccgggt tattcgaccg gctgtccccg accagctcac aaaaccagat agcgctggtc
     2881 aaccaggcga aaccctgtat gctccgccca ctgcctgcca gtctagcggc accgtcttga
     2941 tgttctgtct ctgatctcca tctcctcggc acccctcttc acttcgcatt cagtcgaccc
     3001 ggctcagcgc ctggttgatc acttactcct tggagattta catcatggcc aaccgtgaaa
     3061 ccggtatcgt caaatggttc aacgccgaga aaggcttcgg cttcatcact cccgaatccg
     3121 gcgcggacct gttcgtccac ttccgccaga tcgaaggcag cggcttcaag tcgctcgatg
     3181 aaggccagcg cgtttccttc gtcgtagccc agggccagaa aggcccgcaa gccgaacagg
     3241 ttcaggtgat ctaacgatcg ccgcaccgaa gagccccgcc catgcggggc tttttttgcc
     3301 cttcgccagg ggcatgagat acgcgcagca ctgctgctac tgagcgaccc ggccagcgcc
     3361 cgggaaggca aggacttggc caccggtgcc aacgtcgaca tcgaccagag caccctgatc
     3421 agaaccggcg cgaccctccg cttctacgac tacggcgccg gcgaataccg cagcggcctg
     3481 gccacagcca atcagcctgc acaagggcac gatggacgtg cagatcgacg acgagaagag
     3541 cgagcgcccc cgcaccctcg ccatcgagaa ctgaccgcgc gcgccacgta agcgtgtgtg
     3601 cagggcgccg gctcagcgca gggtgtagcc cttgtccacc acccagtcct ggccgtacac
     3661 gccgcgggcg ccctgggaca gctggaacag caccacctcg gccaccgcct cggagctgag
     3721 gaattcgttg tccaccagcc gtgcatttac ttcgctggcc acgccggcca gcgcatcgtc
     3781 cggcaagccc aggctgttcc agatcggcgt ggcagtcggc cccggcgaca ccagattcag
     3841 gcgcaggccc tcgttcgcat gttccagcgc caggctgcgc accaggctgg acagcgccgc
     3901 cttggtggcg atgtacgcac cgaggccgac gaagcccaga tggcgcagga aggtgctgat
     3961 gaacaccacc gacgccggct gggccagctg cgccttcagc gcatagaagg tgttcaacgc
     4021 gccggcgccg ttgacccgcc actgctcgtc gaacgcctgc agatcgctgc ccggcgccag
     4081 cttggcaatg cccgcgttgg gcaccaggta atgcacttcg cccagctccg cggcgcgctc
     4141 ggccaggccc tgcagcgacg cctcgcgggt cacgtcgccc tcgtaccaga acagccgctc
     4201 gggatagcgc tccagcagcg tccccaaccc acccaggccg cgcgacatcg ccagcactcg
     4261 cgcgccacgc tgcagcagca gctcgcacac ggccagacca ataccggaac tggcgccggt
     4321 caccaccgcc aggcgttgtt cgaattcgtt gttcatgacc acctcgatgc agaaagaagg
     4381 aatcgcgccc cgggccgagc ccgaagcggc aataaggaat cagtggggat agaga
//
LOCUS       DATIHC010000420         3294 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12750, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000420 DATIHC010000000
VERSION     DATIHC010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3294
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12750"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(3..1592)
                     /locus_tag="VLF16_06770"
     CDS             complement(3..1592)
                     /locus_tag="VLF16_06770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015475793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSX70619.1"
                     /translation="MRSIFMLLALCAGLPAFAQSQSLVVCSEAAPEGFDIVQYTAATT
                     ADASAETVYERLVQFAPGSTRIVPALAESWEVGADGLTYTFTLRKGVQFHQTPWFKPS
                     RELNADDVLWSFQRQRDKDHPWHALSPRGYPYFEAMGFAELIEKIEALDEHRVRFTLK
                     HPEAPFLADLAMGFTSIYSAEYAEQLLDAETPQKLNSQPIGTGPFVFERYAKDAQVRF
                     AGNPHYWGGKPALDRLLLAITPDPNTRIQQLKAGACQVAVFPRPSDVPALRENKDLQV
                     LELDSLLTAYVAINTRHKPLDDVRVRQAINLAFDRQAYLRAQYGEGNATLAAAPYPAT
                     LLGYDERLQPWPKDLERARQLLAEAGHEKGLKLSIWTRPGGGPTNPNPGIGAQMLQAD
                     LAAIGIQADIRVFEWGELIKRAKNGEHDLVFMGWAGDNGDPDNFLTPNLSCAAAASGE
                     NQAGWCHKEFDQLIREARRVAEPQRRAALYREALAIFHDQAPWIALAHPKQFAVLRRD
                     VEGFVLSPLGSNNFAHVRRKP"
     gene            complement(1795..>3294)
                     /locus_tag="VLF16_06775"
     CDS             complement(1795..>3294)
                     /locus_tag="VLF16_06775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSX70620.1"
                     /translation="SPAGFDPGQYTTGTDFDSTAETMFNRLTQFERGGTAVEPGLAEK
                     WDVTADGLTYTFHLRKGVKFHNTDYFKPTREFNADDVLFTFQRMLDKEHPFRKAYPAE
                     FPYFTDMGMDANIAKLEKLDDHTVKFTLNSVDAAFIQNLAMSFASVHSAEYADQLLKA
                     GKAADINQKPIGTGPFVFKRYQKDAQIRFTGNKNYWKPDDVKIDNLIFSINTDASVRM
                     QKLKAGECQITLLPRPADLEGLKKDPNLNMPSQPGFNLGYIAYNVTHKPFDKLEVRQA
                     LDMAVNKQAIIDAVYQGAGQLAVNGMPPTQWSYDDSIKGTEYNPEKAKELLKAAGVAE
                     GTEITLWAMPVQRPYNPNAKLMAELLQNDWAKIGIKARIVTYEWGEYIKRSKGGEHDA
                     MLIGWSGDNGDPDNWLGTLYGCDAVDGNNFSKWCFEDYDKLIKQAKATTDVAQRTELY
                     KQAQHILKAQVPITPIAHSTVYQPMRKNVQDFKISPFALNSFYGVSAGK"
BASE COUNT          474 a          993 c         1176 g          651 t
ORIGIN      
        1 tgttatggct tgcgcctcac atgggcgaaa ttgttggagc ccagcgggct gagcacgaaa
       61 ccctcgacgt cccggcgcag cacggcgaac tgcttggggt gggcgagggc gatccacggc
      121 gcctggtcgt ggaagatcgc cagcgcctca cggtacagcg cggcgcggcg ctgcggttcg
      181 gcgacccggc gggcctcgcg gatcagctgg tcgaactcct tgtgacacca gccggcctgg
      241 ttctcgccgc tcgcggcggc ggcgcaggat aggttggggg tgaggaagtt gtccgggtcg
      301 ccgttgtcgc cggcccagcc catgaacacc aggtcgtgct cgccgttctt ggcgcgcttg
      361 atcagctcgc cccactcgaa cacgcggatg tccgcctgga tgccgatggc ggcgaggtcg
      421 gcctgcagca tctgcgcgcc gatacccggg ttgggattgg tcgggccgcc gccggggcgg
      481 gtccagatcg acagcttcag gcctttttca tgaccggcct cggccagcag ctgacgggcg
      541 cgctcgaggt ccttgggcca gggctgcagg cgctcgtcgt agccaagcag agtggccggg
      601 taaggcgccg cggccagggt ggcgttgccc tcgccgtact gggcgcgcag gtaggcctgg
      661 cggtcgaagg ccaggttgat ggcctggcgc acgcgcacat cgtccagcgg cttgtgccgg
      721 gtgttgatgg cgacataggc ggtgagcagc gagtccagtt ccagcacctg caggtccttg
      781 ttctcgcgca gcgccggtac gtcgctcggt ctcgggaaca cggctacctg gcaggcgccg
      841 gccttgagct gctggatgcg cgtgttgggg tcgggggtga tggccagcag cagacgatcg
      901 agcgccggct tgccgcccca gtagtgcggg ttgccggcga agcgcacctg ggcgtccttg
      961 gcgtagcgct cgaagacgaa gggtccggtg ccgatgggct ggctattgag tttctgcggc
     1021 gtctcggcgt ccagcagttg ctcggcgtac tcggcggaat agatggaggt gaagcccatg
     1081 gccaggtcgg ccaggaacgg cgcctcgggg tgcttcaggg tgaagcgcac gcggtgctcg
     1141 tcgagcgcct cgatcttctc gatcagctcg gcgaagccca tggcctcgaa ataggggtaa
     1201 ccgcgcggcg acagcgcgtg ccacgggtga tccttgtcgc gctggcgctg gaagctccac
     1261 agcacgtcat cggcattcaa ttcgcggctc ggcttgaacc agggcgtctg gtgaaactgc
     1321 acacccttgc gcagggtgaa ggtgtaggtc aggccgtcgg cgccgacctc ccagctctcg
     1381 gccagcgccg ggacgatgcg ggtactgccg ggggcgaact gcaccaggcg ctcgtagacc
     1441 gtctcggccg aggcgtcggc ggtggtggcg gcggtgtact ggacgatgtc gaacccttcc
     1501 ggggccgcct cggagcagac caccagggac tgcgactggg cgaacgccgg caggccggcg
     1561 cagagcgcca ggagcatgaa gatgctgcgc atgaatcctt ccttctgcgg gtgaaccggg
     1621 cggaggcgaa cgctcccgcc cggtgcgcgg ctagaagtca gcgccgggct ggctgcgcgt
     1681 cggaaaagct gcgttgaaac cggcttcgga atgctcattt accctctgta aactccgctt
     1741 cctcagccgc tttcgcctta cttttctcta gctcgccagg cccgccacag actcctactt
     1801 gccggcgctc acgccataga aggagttgag cgcgaacggg ctgatcttga agtcctgcac
     1861 gttcttgcgc atcggctggt acacggtgga gtgggcgatc ggggtgatcg gcacctgggc
     1921 cttgaggatg tgctgcgcct gcttgtacag ctcggtgcgc tgggccacgt cggtggtcgc
     1981 cttggcctgc ttgatcagct tgtcgtagtc ctcgaagcac cacttggaga agttgttgcc
     2041 gtcgaccgcg tcgcagccgt acagggtgcc cagccagttg tccgggtcgc cgttgtcgcc
     2101 gctccagccg atcagcatgg cgtcgtgctc gccgcccttg gaacgcttga tgtactcgcc
     2161 ccactcgtag gtgacgatcc gcgccttgat gccgatcttc gcccagtcgt tctgcagcag
     2221 ttcggccatc agcttggcgt tggggttgta cgggcgctgc acgggcatgg cccacagggt
     2281 gatctcggtg ccttcggcga cgccggcggc cttgagcagc tccttggcct tctccgggtt
     2341 gtactcggtg cccttgatgc tgtcgtcgta ggaccactgg gtcggcggca taccgttcac
     2401 cgccagctgg ccggcgccct ggtacacggc gtcgatgatc gcctgcttgt tcaccgccat
     2461 gtccagcgcc tggcgcactt cgagcttgtc gaacggcttg tgggtgacgt tgtaggcgat
     2521 gtagccgagg ttgaagcccg gctgcgacgg catgttcagg ttcgggtcct tcttcaggcc
     2581 ctcgaggtcg gccgggcgcg gcagcagggt gatctggcac tcaccggcct tgagcttctg
     2641 catgcgcacc gaggcgtcgg tgttgatgga gaagatcagg ttgtcgatct tcacgtcatc
     2701 cggcttccag tagttcttgt tgccggtgaa gcggatctgc gcgtccttct ggtagcgctt
     2761 gaacacgaag gggccggtgc cgatcggctt ctggttgatg tcggcggcct tgccggcctt
     2821 gagcagctgg tcggcgtact cggccgaatg caccgaggcg aagctcatcg ccaggttctg
     2881 gatgaacgcg gcatccacac tgttcaaggt gaacttgacg gtgtggtcgt cgagcttctc
     2941 cagcttggcg atgttggcgt ccatgcccat gtcggtgaag taggggaact cggccgggta
     3001 ggccttgcgg aacgggtgtt ccttgtcgag catgcgctgg aaggtgaata gcacgtcgtc
     3061 ggcgttgaat tcgcgggtcg gcttgaagta gtcggtgttg tggaacttca cgcccttgcg
     3121 caggtggaag gtgtaggtga ggccatcggc ggtgacatcc cacttctcgg ccaggcccgg
     3181 ctcgacggcg gtgccgccac gctcgaactg ggtcaggcgg ttgaacatgg tttccgcggt
     3241 cgaatcgaag tcggtgccgg tggtgtactg gcccggatcg aaaccggcgg ggct
//
LOCUS       DATIHC010000421         2232 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43180, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000421 DATIHC010000000
VERSION     DATIHC010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2232
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43180"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..826)
                     /locus_tag="VLF16_06780"
     CDS             complement(<1..826)
                     /locus_tag="VLF16_06780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HSX70621.1"
                     /translation="MFDLFSGLDAWVAVSLVLALAFVLAFEFINGFHDTANAVATVIY
                     TKAMPPHLAVIASGIFNFLGVLLGGVGVAYAIVHLLPVELLINVNTSHGLVMVFSLLT
                     AAIAWNLGTWYFGIPASSSHTLIGSILGVGLANALLTEISLADGVNWQKAIDIGLSLL
                     LSPLAGFAVAALILIGLRRAFADSKMHETPESRKEIKGKKKPPFWNRVVLIASAMGVS
                     FVHGSNDGQKGIGLIMLVLIGIVPAKFVLDLNSTTYQIERTRDAAIHLQQFYQRNDD"
     gene            995..2134
                     /gene="argE"
                     /locus_tag="VLF16_06785"
     CDS             995..2134
                     /gene="argE"
                     /locus_tag="VLF16_06785"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003457440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019213 - deacetylase activity [Evidence
                     IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HSX70622.1"
                     /translation="MPLPPLREQLATLIATPSVSCTQPHWDQSNRAVVELLASWLGDL
                     GFACEIQEVLPGKCNLLATLGSGPGGLVLAGHSDTVPFDAGLWQSDPLRLSEQGDRWV
                     GLGVCDMKGFFPLVIEAVRGLLDRPFRQPLLVLATCDEESSMIGARTLAEAGRPLGRA
                     AVIGEPTGLKPVRLHKGVMMERIDILGQSGHSSDPSLGHSALEAMQDAMGALRELRAQ
                     WQSEFNNPQFGVPQPTLNLGCIHGGDNPNRICGQCSLEFDLRPLPGMDPEQLRAAIRG
                     KLQPLAERHRVQIDYGPLFPSVPPFEQGADSELVRIAERLTGQAAQSVAFGTEAPYLQ
                     QLGCETLVLGPGDIACAHQPGEYLELARVEPTVTLLRQLIQHYCL"
BASE COUNT          379 a          737 c          773 g          343 t
ORIGIN      
        1 catcatcgtt gcgctggtag aactgctgca ggtggatggc tgcgtcgcgg gtgcgctcga
       61 tctggtaggt ggtgctgttg aggtccagga cgaacttggc cgggacaatg ccgatcagca
      121 ccagcatgat caggccgatg cccttctggc cgtcgttgga gccgtgcacg aagctcacgc
      181 ccatggccga ggcgatcagc accacgcggt tccagaacgg cggcttcttc ttgcccttga
      241 tctctttgcg gctctccggg gtctcgtgca tcttcgagtc ggcgaaggcg cggcgcaggc
      301 cgatcaggat cagcgcggcg acggcgaagc cggccagcgg cgagagcagc agcgacaggc
      361 cgatgtcgat cgccttctgc cagttcacgc cgtcggccag ggagatctcg gtgagcaggg
      421 cgttggccag gccgacgccg aggatcgagc cgatcagcgt gtgcgagctg gaggcgggaa
      481 tgccgaagta ccaggtgccc aggttccagg cgatggcggc ggtcagcagg gaaaacacca
      541 tcaccaggcc gtgggaggtg ttgacgttga tcagcagctc caccggcagc aggtgaacga
      601 tggcgtaggc cacgccgacg ccgccgagca gtacgccgag gaagttgaag atgccggagg
      661 cgatcaccgc caggtgcgga ggcatcgcct tggtgtagat gaccgtggcc accgcgttgg
      721 cggtgtcgtg gaatccattg atgaattcga aggccaggac gaaggccagg gccagcacca
      781 ggctgacggc cacccaggca tctagcccgc tgaatagatc gaacatgacg gtttcatgac
      841 agagaaaaag ggcgcgaagt atgccagatg acaacggctt ctgctcaaac gctcgatttt
      901 cctcgcgccg ccccggacga aaggtccgcg ccgtgccgtt tgcagcggtg ccgcgcggct
      961 ctctatgatg gggccggacc ccgggagatc cgccatgccg cttccaccgc tcagagaaca
     1021 gctcgccacg ctgatcgcca cgccttcggt gagctgtacc cagccgcact gggatcagtc
     1081 caaccgcgcc gtcgtcgagc tgctcgccag ctggctgggc gacctcggct tcgcctgcga
     1141 gatccaggag gtgctgccgg gcaagtgcaa cctgctggcg acgctgggca gcggccccgg
     1201 cggcctggtg ctggccggtc acagcgatac cgtgccgttc gatgccggcc tgtggcagag
     1261 cgacccgctg cgcctgagcg agcagggcga ccgctgggtg gggcttggcg tgtgcgacat
     1321 gaagggcttc ttcccgctgg tgatcgaggc cgttcgcggg ctgctcgacc ggccgttccg
     1381 ccagccattg ctggtgctgg cgacctgcga cgaggaaagc tcgatgatcg gcgcgcggac
     1441 cctggccgag gccgggaggc cgctggggcg cgccgcggtg atcggcgaac ccaccgggct
     1501 caagccagtg cgcctgcaca agggcgtgat gatggagcgc atcgacatcc tcgggcagag
     1561 cggccactcc tccgacccca gcctcggcca cagcgcgctc gaggccatgc aggacgccat
     1621 gggcgccctg cgcgagctgc gcgcgcagtg gcaaagcgaa ttcaacaacc cgcagttcgg
     1681 cgtaccgcag ccgaccctca acctcggctg catccacggt ggcgacaacc ccaaccgcat
     1741 ctgcggccag tgctcgctgg agttcgactt gcgcccgctg ccgggcatgg acccggagca
     1801 gctgcgcgcg gccatccgcg gcaagctgca gccgctggcc gagcgccacc gggtgcagat
     1861 cgactacggg ccgctgttcc ccagcgtgcc gcccttcgag cagggcgccg acagcgagct
     1921 ggtgcgcatc gccgaacgcc tcaccgggca ggcggcgcag tcggtggcat tcggcaccga
     1981 agccccgtat cttcagcagc tcggctgcga gaccctggtc ctcggcccgg gcgacatcgc
     2041 ctgcgcccac cagccgggtg aatacctcga gctggcgcgc gtcgagccga ccgtgacgct
     2101 gctgcgccaa ctgatccagc actactgcct atgacccgcc agaccgaccg gagcctgttc
     2161 accgtgctac gacgataact acggactgcc ctctcccgct cgcgggggag gtttggggag
     2221 agggtgagcg at
//
LOCUS       DATIHC010000422         2547 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43181, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000422 DATIHC010000000
VERSION     DATIHC010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2547
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43181"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..297)
                     /locus_tag="VLF16_06790"
     CDS             complement(<1..297)
                     /locus_tag="VLF16_06790"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017336808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HSX70623.1"
                     /translation="MQIQGHFDLRFEALKDAFAELFDDPQERGAALCVQIGGETVVDI
                     WAGTTDKDGAEAWHSDTILNLFSCTKTFAAVAALQLVEQGKLELDAPVSRWWPEF"
     gene            complement(465..>2547)
                     /locus_tag="VLF16_06795"
     CDS             complement(465..>2547)
                     /locus_tag="VLF16_06795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016491530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="beta-agarase"
                     /protein_id="HSX70624.1"
                     /translation="AADNPSLRLSPQSGDWDWSQAGAMSLRLQNAMDWAITLEVRIES
                     RDGKVLASRIALPAGPAQTLLVPLAATSPRTHGMRAAPPMPVSVEGQRVLLAETVEGE
                     LTAAQVSAVTLSMSKPDAPQSILLGRFGVQIGDAAQKAVYTEIIDAYGQYARGQWPEK
                     VDEDQQLRDGAGQEREQIRTWLAERPQQDKFGGWIGGPTFEAKGFFRTEKRDGRWYLV
                     TPEGNPFYSLGVNAVSAWQSQTYVEGREGMFAALPKDGEPLAAYYGSRDSRSNSGASR
                     GRAFDQGRWYDFYRANLQRSYAEPCATAQPPLAATPAPAELAPCPAPGFDADRWTQHS
                     LDRLQAWGFNTLGNWSDDTLGKAQRMPYSIPLSISGDYATISTGHDWWGGMPDPFDPR
                     FAMAAERAIAIATRDRRDDPWLLGFFADNELAWAAPGTDPKSRYALAYGTLRLTTDVP
                     AKRAFLKQLRDKYRNQNGLSKAWGIELKAWELMEDPGFEPPLPSPEFPQIEKDLQNFQ
                     RLFATTYFKTIADSLKWHSPNHMLLGGRFAIATPEAIEACAQYCDVLSFNFYVKEPQH
                     GYDFATLRALDKPLMVTEFHFGSRDRGPFWGGVSEVYKEEERGPAYAHFVAKALEEPA
                     IVGVHWFQYLDQPASGRLLDGENGHFGLVAITDRPWQGFVEAVRKANLEVPKQLLPKV
                     EPAKAQAPAKP"
BASE COUNT          373 a          824 c          916 g          434 t
ORIGIN      
        1 gaactcgggc caccagcgcg agacgggcgc gtccagctcc agcttgccct gttcaaccag
       61 ctgcagggcg gcaacggcgg cgaacgtctt ggtgcaggag aacaggttga ggatggtatc
      121 gctgtgccag gcctcggcac cgtccttgtc ggtggtaccg gcccagatgt cgacgacggt
      181 ttcgccgccg atctgcacgc acagggcggc gcctcgttcc tggggatcgt cgaacagttc
      241 ggcgaaggca tctttgagcg cttcgaagcg caggtcgaaa tggccctgga tctgcaacct
      301 gtaactcctc gggtcagaat ggccggcatt gtttcagcac cggctgcgca tgggaatcct
      361 ggcgctttgt tcaagccacg cggtcagacc aacggtccta aaccaacggt ctgccgcccg
      421 aaggcgccgt gcggcgctcc gggcaggaca ttgagctgtg cgaatcaggg cttggccggt
      481 gcctgcgcct tggccggctc gaccttgggc agcagctgct tgggcacctc gaggttggcc
      541 ttgcgcaccg cctcgacgaa gccctgccag ggccggtcgg tgatggcgac caggccgaaa
      601 tgaccgtttt cgccatcgag caggcggccg ctggccggct ggtccaggta ctggaaccag
      661 tgcacgccga cgattgcagg ctcctcgagc gccttggcca cgaagtgggc ataggccggg
      721 ccgcgctcct cttccttgta gacctccgaa acgccgcccc agaacgggcc gcgatcacgc
      781 gagccgaagt ggaactcggt gaccatcagc ggcttgtcca gcgcccgcag ggtggcgaag
      841 tcgtagccgt gctgcggctc cttgacgtag aagttgaagc tgagcacgtc gcagtactgg
      901 gcgcaggcct cgatggcctc cggcgtggcg atggcgaagc ggccgccgag tagcatgtgg
      961 ttgggcgagt gccacttcag cgagtcggcg atggtcttga agtaggtggt ggcgaacagg
     1021 cgctggaagt tctgcaggtc cttctcgatc tgcgggaact cggggctcgg cagcggcggc
     1081 tcgaagcccg ggtcctccat cagctcccag gccttgagct cgatgcccca ggccttggac
     1141 aggccgttct ggttgcggta cttgtcgcgc agctgcttga ggaaggcgcg cttggccggc
     1201 acgtcggtgg tcaggcgcag ggtaccgtag gccagggcgt agcgcgattt cggatcggtg
     1261 ccgggcgctg cccaggccag ctcgttgtcg gcgaagaagc cgagcagcca ggggtcgtcg
     1321 cgacggtcgc gggtggcgat ggcgatggcg cgctcggcgg ccatggcaaa gcgcgggtcg
     1381 aacggatcgg gcatgccgcc ccaccagtcg tgaccggtgc tgatggtggc gtagtcaccg
     1441 gagatcgaca gcgggatgct gtacggcatg cgctgggcct tgcccagggt gtcgtcgctc
     1501 cagttgccca gtgtgttgaa gccccaggcc tgcaggcggt cgagggaatg ctgggtccag
     1561 cgatcggcat cgaagcccgg ggccgggcat ggcgccagct cggccggcgc cggcgtcgcc
     1621 gccagcggcg gttgcgccgt cgcacagggt tcggcgtagc tgcgctgcag gttggcgcga
     1681 tagaagtcgt accagcgccc ctgatcgaag gcgcgaccac ggctggcacc gctgttgctg
     1741 cggctgtcgc ggctgccgta ataggcggcc agcggctcgc cgtccttggg cagcgcggcg
     1801 aacatgccct cgcgtccttc cacgtaggtc tggctctgcc aggcgctgac ggcgttgacg
     1861 cccagcgaat agaaaggatt gccctcgggc gtgaccaggt accagcggcc gtcgcgcttc
     1921 tccgtgcgga agaagccctt ggcctcgaag gtcgggccgc cgatccagcc gccgaacttg
     1981 tcctgctgcg ggcgctcggc cagccaggtc cggatctgct cgcgctcctg gccggcgccg
     2041 tcgcgcagct gctggtcctc gtcgaccttt tcgggccact ggccgcgggc gtactggccg
     2101 taggcgtcga tgatctcggt gtacacggcc ttctgcgcgg catcgccgat ctgcaccccg
     2161 aagcggccga ggagaatact ctgcggcgcg tccggcttgc tcatgctcag ggtcacggcg
     2221 ctgacctgag cggcggtgag ttcgccttcc accgtctcgg ccagcaacac gcgctgaccc
     2281 tcgacgctca ccggcatcgg cggtgcggcg cgcatgccgt gggtccgcgg cgaggtcgca
     2341 gccagcggca ccagcagggt ctgtgccggg cccgccggca gggcaatgcg actggccagc
     2401 accttgccgt cgcggctctc gatgcgcacc tcgagggtga tggcccagtc catggcgttc
     2461 tgcaaacgca ggctcatggc accggcctgg gaccagtccc agtcaccgct ctgcgggctc
     2521 aggcgcaggc tggggttatc ggcggcg
//
LOCUS       DATIHC010000423         2051 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12762, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000423 DATIHC010000000
VERSION     DATIHC010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2051
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12762"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..598
                     /locus_tag="VLF16_06800"
     CDS             <1..598
                     /locus_tag="VLF16_06800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003447052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HSX70625.1"
                     /translation="PEAAYRAAFFDRDRAETLATLRPQWHGPDWSGEFLREHFAMPGA
                     EAAVDKALRLDGTVMLVDDPVKRVDNMTMAWGLEARTPFLDYRLVELAARVPARFKLP
                     DGGKHVLKEAARLVIPHAVIDRPKGYFPVPGLKHLQGATLGWVQQLLLDPSQDRGLYQ
                     PAVLDRLLSDPAGQLTPLRGSKLWQLAALNLWLSEQGL"
     gene            621..>2051
                     /gene="ngg"
                     /locus_tag="VLF16_06805"
     CDS             621..>2051
                     /gene="ngg"
                     /locus_tag="VLF16_06805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglutaminylglutamine synthetase"
                     /protein_id="HSX70626.1"
                     /translation="MRASAFTQRLQRGQPPSYERLQAHLAKDGIEQPAPQCLRCGWGR
                     LLIGHTYPNAEALAQALLEERPGERDIALYVAAPHQVLAHAPQQLFLDPSDTLRLWFT
                     DYRPARDSFRGFQIRRVQSEQDWEAINGLYRQRGMLPIDTEQLTPREDGGPSYWLAED
                     ESDGRVIGAVMGLNHREAFADPEGGSSLWCLAVAPDCQRPGVGEALVRHLIEYSMSRG
                     LNYLDLSVLHDNKGAKSLYAKLGFRVLPTFAVKRRNGINQSLFLGPGPEAELNPYAKI
                     IVDEARRRGIEVRVDDAEGGLFTLSQGGRRIRCRESLSDLTSAVSMTLCQDKRLTHRT
                     LARAGLRQPAQRLAGSAEDNADFLAEHGSIVVKPVDGEQGQGVAVDLRSEEAVQQAIE
                     RARQFDQRVLLESYHQGQDLRIVVIGYQVVAAAIRHPAEVIGDGVHTIGALIEAQSRR
                     RQSATGGESRIPLDAETQRTLHDAGYD"
BASE COUNT          331 a          758 c          678 g          284 t
ORIGIN      
        1 ccccgaggcc gcctaccgcg ccgccttctt cgaccgcgac cgcgccgaga cgctggccac
       61 cctgcgcccg caatggcatg gaccagactg gtccggcgag ttccttcgcg agcacttcgc
      121 catgcccggc gccgaggcgg cggtggacaa ggcgctgcgc ctggacggca cggtgatgct
      181 ggtcgacgac ccggtgaagc gggtcgacaa catgaccatg gcctggggcc tggaggcacg
      241 cacgccgttc ctcgactacc gcctggtgga gctggcggca cgcgtcccgg cacgcttcaa
      301 gctgccggac ggcggcaagc acgtgctcaa ggaagccgcc cgcctggtga ttccccacgc
      361 cgtgatcgat cgccccaagg gctacttccc ggtgccgggc ctcaaacacc tgcagggcgc
      421 caccctcggc tgggtgcagc agttgctgct cgacccgagc caggaccgcg gcctctatca
      481 gcccgccgtg ctcgaccgcc tgctcagcga cccggccggc cagctcacgc ccctgcgtgg
      541 ctccaagctc tggcagctcg ccgctctcaa cctttggctc agtgaacagg gcctgtagat
      601 cgacacaagg agtttcatca atgcgtgcat ctgccttcac ccaacgcctg cagcgcggcc
      661 agccgccctc gtacgagcgc ctgcaggcgc acctggccaa ggacggcatc gaacaacccg
      721 caccgcagtg cctgcgctgc ggctggggtc ggctgctgat cggccacacc tatccgaacg
      781 ccgaggccct ggcccaggcg ctgctcgagg agcgccccgg cgagcgcgac atcgccctgt
      841 acgtcgccgc accgcatcag gtgctggcgc acgcgccgca gcagctgttc ctcgacccct
      901 ccgacaccct gcgcctgtgg ttcaccgact accggccggc ccgcgacagc ttccgcggct
      961 tccagatccg ccgggtgcag agcgagcagg actgggaagc catcaatggt ctgtaccgcc
     1021 agcgcggcat gctgccgatc gacaccgaac aactgactcc gcgcgaggac ggcggcccca
     1081 gctactggct ggccgaggac gagagcgatg gccgggtcat cggcgcggtg atgggcctca
     1141 accaccgcga ggcgttcgcc gatccggaag gcggtagcag cctgtggtgc ctggcggtcg
     1201 ctccggactg ccagcgcccc ggcgtcggcg aggcgctggt gcgtcacctg atcgaatact
     1261 cgatgagccg cggcctgaac tacctggacc tgtcggtcct gcacgacaac aagggcgcca
     1321 agtcgctcta cgccaagctc ggcttccgcg tgttgccgac cttcgcggtg aaacggcgca
     1381 acggcatcaa ccagtcgctg ttcctcggcc ccggcccgga ggccgagctc aatccttacg
     1441 ccaagatcat cgtcgacgag gcccgtcggc gcggcatcga agtgcgcgtg gacgacgccg
     1501 agggcgggct gttcaccctc agccagggcg gccggcgcat tcgctgccgt gagtcgctgt
     1561 ccgatctcac cagcgcggtc agcatgaccc tgtgccagga caagcgcctc acccaccgca
     1621 ccctggcccg cgccgggttg cgccagccgg cccagcgcct ggccggcagc gccgaggaca
     1681 acgcagactt cctcgccgag catggcagca tcgtggtcaa gccggtggac ggcgaacaag
     1741 gccagggcgt ggccgtggac ctgcgcagcg aggaagcggt gcagcaagcc atcgaacgcg
     1801 cgcgccagtt cgaccagcgc gtgctgctgg agagctacca ccagggccag gacctgcgca
     1861 tcgtggtgat cggctaccag gtggtggcgg ctgccattcg ccacccggcg gaagtgatcg
     1921 gcgacggcgt gcacaccatc ggcgcgctga tcgaggccca gagtcgtcgg cgccagtcgg
     1981 ccaccggcgg cgagagccgc atcccgctgg atgcggagac ccagcgcacc ctgcacgacg
     2041 ccggttacga c
//
LOCUS       DATIHC010000424         3803 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_3525, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000424 DATIHC010000000
VERSION     DATIHC010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3803)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3803)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3803
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3525"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(32..502)
                     /locus_tag="VLF16_06810"
     CDS             complement(32..502)
                     /locus_tag="VLF16_06810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007909058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSX70627.1"
                     /translation="MAHPNAELIDRFYQAFQRQDADAMAACYADDVEFSDPVFHDLKG
                     TDAGDMWRMLCARAQQFSLAYEVLEADDEKGRARWVATYLFSQTGRMVENHIEASFRF
                     DGGKIVEHRDCFDLWRWSRQALGAKGVLLGWLAPVQNAIRKQAMGGLRAWQAGR"
     gene            598..1551
                     /locus_tag="VLF16_06815"
     CDS             598..1551
                     /locus_tag="VLF16_06815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017675241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSX70628.1"
                     /translation="MIRIALYTCPQTVLSSLSMADDAFRLANQLAGEALFELQRISVD
                     GQPVQLGYAQLRVDGDLSLAERADLLLIPATGSALDRTLEHNAALLAWLAARPQHQQL
                     ASLCSSACLLAASGVLDGRRATTHWALAEQFRQRFPRVRLQIDALFTEDDNRFCSGGA
                     QAGLDLCLHLIALHGGDWLAQRVAGALVVERERGGQSRFAPLLPVAGQDDALIAPLLR
                     WLQQHHAQAIDLPLLAERANCSTRTLLRRFKAATGLTPNDYLQRLRISAAQSALRNPA
                     RSLEQVAVQVGYADRATFAKLFKQLCGETPGAFRKRLRQPM"
     gene            complement(1707..2468)
                     /locus_tag="VLF16_06820"
     CDS             complement(1707..2468)
                     /locus_tag="VLF16_06820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011103489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HSX70629.1"
                     /translation="MTEVKKETAAEPIIQLQGVNKWYGQFHVLKDINLDVQQGERIVL
                     CGPSGSGKSTTIRCINRLEEHQQGRIVVDGTELTSDLKHIEAIRSEVGMVFQHFNLFP
                     HLTVLQNCTLAPMWVRKMPKRKAEEIAMHFLERVRIPEQAHKYPGQLSGGQQQRVAIA
                     RALCMKPKIMLFDEPTSALDPEMVKEVLDTMIGLAEDGMTMLCVTHEMGFARTVANRV
                     IFMDRGEIVEQNEPNAFFDNPQNERTKLFLGQILH"
     gene            complement(2481..3578)
                     /locus_tag="VLF16_06825"
     CDS             complement(2481..3578)
                     /locus_tag="VLF16_06825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003216325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HSX70630.1"
                     /translation="MEVHQFRPSLPPPRMSVGVVGWLRSNLFSNWFNTLLTLLAIYLV
                     WLIVPPLLKWAVFEADWVGTTRADCTGEGACWVFIKERFSQFMYGFYPAELRWRVDLT
                     VWLAVIGAAPLFVSAMPRKALYGAAFLVIYPLLAFWLLHGGFLGLTEVETSQWGGLML
                     TLVIAAVGIAGALPLGIVLALGRRSKMPAIRVICVTFIEFWRGVPLITVLFMSSVMLP
                     LFLPEGLSFDKLLRALIGVILFQSAYIAEVVRGGLQAIPKGQYEAAAAMGLGYWRMMG
                     LVILPQALKLVIPGIVNTFIALFKDTSLVIIIGLFDLLNSIKQATTDPAWLGMATEGY
                     VFAALVFWIFCFGMSRYSMRLERKLDTGHKR"
     gene            complement(3589..>3803)
                     /locus_tag="VLF16_06830"
     CDS             complement(3589..>3803)
                     /locus_tag="VLF16_06830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017254077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HSX70631.1"
                     /translation="SQYLNLAKNSSLAAGIGYPDMVSLFAGTTLNQTGQAIEAIAITM
                     SVYLAISISISILMNWYNKRIALIER"
BASE COUNT          649 a         1272 c         1267 g          615 t
ORIGIN      
        1 gcaggatgcg gggccgccga gcttacgcca gtcagcgccc ggcctgccag gcgcgcagcc
       61 cgcccatggc ctgcttgcgg atggcgttct gcaccggcgc cagccagccg agcagcacgc
      121 ccttggcgcc cagggcctgg cgggaccagc gccacaggtc gaagcagtcg cggtgctcga
      181 cgatcttgcc gccgtcgaag cggaagctgg cctcgatatg gttctccacc attcgcccgg
      241 tctggctgaa caggtaggtc gccacccagc gcgcgcggcc cttttcgtcg tccgcttcga
      301 gcacctcgta ggccagggag aactgctggg cgcgggcgca gagcatgcgc cacatgtcgc
      361 cggcgtcggt gcccttgagg tcatggaata ccgggtcgga gaactcgaca tcgtcggcgt
      421 agcaggcggc catggcatcg gcgtcctggc gctggaaggc ctgatagaaa cggtcgatca
      481 gttcggcgtt ggggtgggcc atggcaacac gctccgggtt gggatgggcg aagtatggcc
      541 gcggcgaaca ccgtcggcga ttggcgatcc agacaacttt gtggccataa tcgccagatg
      601 atccgcatcg ccctctacac ctgcccacag accgtgctct ccagcctgag catggccgac
      661 gacgccttcc gcctggccaa ccaactggcc ggcgaggcgc tgttcgagct gcagcggatt
      721 agtgtcgacg gccagccggt gcagctgggc tacgcgcagc tgcgggtgga cggcgacctg
      781 agtctggccg agcgtgccga cctgctgctg attcccgcca ccggcagcgc gctggatcgc
      841 actctggagc acaacgccgc cctgctcgcc tggctggccg cgcgcccgca gcaccagcaa
      901 ctggccagcc tgtgcagcag cgcctgcctg ctggccgcct ccggcgtgct ggacggtcgc
      961 cgcgccacga cgcactgggc cctggccgag cagttccgcc agcgcttccc cagagtgcgc
     1021 ctgcagatcg atgcgctgtt caccgaagac gacaaccgct tctgctccgg cggcgcccag
     1081 gccggcctcg acctgtgcct gcacctgatc gccctgcatg gcggcgactg gctggcccag
     1141 cgcgtggccg gcgccctggt ggtggagcgc gagcgcggcg ggcagagccg cttcgccccg
     1201 ctactgccgg tggccgggca ggacgatgcg ttgatcgccc cgctgctgcg ctggctgcag
     1261 cagcaccacg cccaggccat cgacctgccg ctgctggccg agcgcgccaa ctgctccacg
     1321 cgcaccctgc tgcggcgctt caaggcggcc accggcctga cgcccaacga ctacctgcag
     1381 cgcctgcgca tcagcgccgc gcagagcgcc ctgcgcaacc cggcgcgctc gctggagcag
     1441 gtcgccgtcc aggtcggcta cgccgatcgc gccaccttcg ccaagctgtt caagcagctc
     1501 tgcggcgaga cgcccggggc ctttcgcaag cgcctgcgac agccgatgta aggcgccagg
     1561 cgcaccaggg gcggcgcaaa agccggtgcg cacagcgcac cctacgtctc gaaaaccgta
     1621 gggtgcgcca tggactgcca cagcgcccgg tacgcggccc atgaaaaaag gagcctcgag
     1681 ggctcctttt tcctaccgcg gccagatcag tggaggatct gcccgaggaa cagcttggtc
     1741 cgctcgttct gcgggttgtc gaagaatgcg ttgggctcgt tctgttcgac gatctcgcca
     1801 cggtccatga agatcacccg gttggccacg gtgcgggcga agcccatctc gtgggtcacg
     1861 cagagcatgg tcatgccgtc ttcggccagg ccgatcatgg tgtccagcac ctccttgacc
     1921 atttccgggt cgagggcaga ggtgggctcg tcgaacagca tgatcttcgg cttcatgcac
     1981 agggcgcggg cgatggccac gcgctgctgc tggccgccgg agagctgacc cgggtacttg
     2041 tgcgcctgct cggggatacg cacgcgctcg aggaagtgca tggcgatctc ttccgccttg
     2101 cgcttgggca tcttgcgtac ccacatcggc gccagggtgc agttctgcag cacggtcagg
     2161 tgcgggaaca ggttgaagtg ctggaacacc atgcccactt cgctgcggat cgcctcgatg
     2221 tgcttgaggt cgctggtcag ctcggtaccg tcgacgacga tgcgcccctg ctggtgttcc
     2281 tccaggcggt tgatgcagcg gatggtggtg gacttgccgg aaccggatgg gccgcagagg
     2341 acgatgcgct cgccctgctg cacgtcgagg ttgatgtcct tgagcacatg gaactgcccg
     2401 taccacttgt tcacgccctg cagctgaatg atcggctcgg ccgcggtttc tttcttaact
     2461 tcggtcatgg tcgatgactc ctaacgcttg tggccggtgt ccagcttgcg ctccaggcgc
     2521 atggaatagc gggacatgcc gaaacagaag atccagaaca ccagggcggc gaacacgtag
     2581 ccctcggtgg ccatgcccag ccaggccggg tcggtggtgg cttgcttgat gctgttgagc
     2641 aggtcgaaca ggccgatgat gatcaccagg ctggtgtcct tgaacagggc gatgaaggtg
     2701 ttgacgatgc ccgggatcac cagcttgagc gcctgcggca ggatcaccag acccatcatc
     2761 cgccagtagc ccaggcccat ggccgcagcc gcctcgtact ggcccttggg gatggcctgc
     2821 aggccgccac gcaccacttc ggcgatgtag gcggactgga acaggatcac cccgatcagg
     2881 gcgcgcagca gcttgtcgaa ggacaggcct tccggcagga acagcggcag catcaccgag
     2941 gacatgaaca gcacggtgat cagcggcacg ccgcgccaga actcgatgaa ggtcacgcag
     3001 atcacccgga tcgccggcat cttcgagcgc cggcccagcg ccagcacgat gcccagcggc
     3061 aacgcgccgg caatgccgac ggcggcgatc accagggtca gcatcaggcc gccccactgg
     3121 ctggtttcca cttcggtcag gccgaggaag ccaccgtgca gcagccagaa ggccagcagc
     3181 gggtagatga ccagaaacgc cgcgccgtac agcgccttgc gcggcatcgc cgagacgaac
     3241 agcggcgccg ccccgatcac cgccagccac acggtgaggt cgacgcgcca gcgcagttcg
     3301 gccgggtaga agccgtacat gaactggctg aagcgctcct tgatgaacac ccagcaggcg
     3361 ccctcgccgg tgcagtcggc gcgggtggtg ccgacccagt cggcctcgaa caccgcccat
     3421 ttcagcagcg gcggcacgat cagccagacc aggtagatgg ccagcagggt caacagggtg
     3481 ttgaaccagt tggaaaacag gttggatcgc aaccagccga cgacgcccac gctcatgcgg
     3541 ggcggcggca gactgggacg gaactgatgg acttccatgc gcttctcctt accgctcgat
     3601 cagcgcgatg cgcttgttgt accagttcat cagaatcgaa atgctgatgc tgatggccag
     3661 gtacacactc atggtgatgg cgatggcctc gatggcctgg ccggtctggt tcagggtcgt
     3721 gccggcgaac agcgagacca tgtccggata gccgatgccg gcggccagcg acgagttctt
     3781 cgccaggttc aggtactggc tgg
//
LOCUS       DATIHC010000425         3756 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_649, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000425 DATIHC010000000
VERSION     DATIHC010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3756)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3756)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3756
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_649"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..938)
                     /locus_tag="VLF16_06835"
     CDS             complement(<1..938)
                     /locus_tag="VLF16_06835"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HSX70632.1"
                     /translation="MKFSEQWLRGWVNPAVSRDELVARLSMVGLEVDAVIPVAGQFSG
                     VVVGEILSAEQHPDADKLRVCQVSDGSATFQVVCGAPNARAGIKIPFAMIGAELPGDF
                     KIKQAKLRGVESQGMLCSASELQISDDNNGLMELAADAPVGQSLRDYLGLDDASIEIG
                     LTPNRGDCLSLAGLAREVGAIYGAPVTAVSVAPVAAAHDEVRPVEVLASKACPRYLGR
                     VVRNVDLSKPTPMWMVERLRRSDIRSIDAAVDITNYVMLELGQPMHAFDLAEVNGGIR
                     VRMAEEGEKLVLLDGQEVSLRADTLVIADHNRALAIA"
     gene            complement(981..1997)
                     /gene="pheS"
                     /locus_tag="VLF16_06840"
     CDS             complement(981..1997)
                     /gene="pheS"
                     /locus_tag="VLF16_06840"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HSX70633.1"
                     /translation="MENLDALVSQALEAVQNTADVNALEQLRVQYLGKKGELTALMQT
                     LGKLSAEERPQAGALINAAKNQVQVALNARKSVLEQALLAEKLASERIDVTLPGRGQA
                     SGGLHPVTRTLERVEQFFTHIGYNVAEGPEVEDDYHNFEALNIPGHHPARAMHDTFYF
                     NANMLLRTHTSPVQVRTMESQQPPIRIVCPGRVYRCDSDITHSPMFHQVEGLLIDEGI
                     SFADLKGTIEEFLRVFFEKPLGVRFRPSFFPFTEPSAEVDMQCVMCSGKGCRVCKQTG
                     WLEVMGCGMVHPNVLRMSGIDPEKYSGFAFGMGVERLAMLRYGVNDLRLFFDNDLRFL
                     AQFR"
     gene            complement(2093..2449)
                     /gene="rplT"
                     /locus_tag="VLF16_06845"
     CDS             complement(2093..2449)
                     /gene="rplT"
                     /locus_tag="VLF16_06845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HSX70634.1"
                     /translation="MARVKRGVIARARHKKILKLAKGYYGARSRVFRVAKQAVIKAGQ
                     YAYRDRRQRKRQFRALWIARINAGARQNGLSYSRLIAGLKKAAIEIDRKVLADLAVNE
                     KAAFAAIVEKAKAVLA"
     gene            complement(2482..2676)
                     /gene="rpmI"
                     /locus_tag="VLF16_06850"
     CDS             complement(2482..2676)
                     /gene="rpmI"
                     /locus_tag="VLF16_06850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HSX70635.1"
                     /translation="MPKMKTKSGAAKRFLKTAAGYKHKHAFKSHILTKMSTKRKRQLR
                     GSELMHPSDKAKVERMLRVR"
     gene            complement(2737..3288)
                     /gene="infC"
                     /locus_tag="VLF16_06855"
     CDS             complement(2737..3288)
                     /gene="infC"
                     /locus_tag="VLF16_06855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HSX70636.1"
                     /translation="MIIKREMRQDKRAVPKAPINENITAREVRLIGADGEQVGIVSID
                     EALRVAEEAKLDLVEISADAVPPVCRIMDYGKHLFEKKKQAAIAKKNQHQQQIKEIKF
                     RPGTEEGDYQVKLRNLVRFLNEGDKAKVSLRFRGREMAHQELGMELLKRVENDLAEIG
                     TVEQHPKLEGRQLMMVIAPKKRK"
     gene            complement(3288..>3756)
                     /locus_tag="VLF16_06860"
     CDS             complement(3288..>3756)
                     /locus_tag="VLF16_06860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="His/Gly/Thr/Pro-type tRNA ligase C-terminal
                     domain-containing protein"
                     /protein_id="HSX70637.1"
                     /translation="PNLPERLDANYIAEDNSRTRPVMLHRAILGSFERFIGMLIEHYA
                     GAFPAWLAPVQAVIMNITDKQADFALEVEKTLNQSGFRAKSDLRNEKIGFKIREHTLL
                     KVPYLLVIGDREVETRSVAVRTREGVDLGSMPLEQFAEQLKQAVSRRGRQDSE"
BASE COUNT          693 a         1112 c         1167 g          784 t
ORIGIN      
        1 gcgatagcca gggcgcggtt gtggtcggcg attaccaggg tgtcggcgcg caggctgact
       61 tcctggccgt ccagcaggac cagcttctcg ccctcttccg ccatgcgcac gcggatgccg
      121 ccgttgacct cggcgagatc gaaggcatgc atcggctggc cgagttcgag catcacgtag
      181 ttggtgatgt cgacggcagc gtcgatgctg cggatgtcgg aacgacgcag gcgctcgacc
      241 atccacatcg gggtcggttt ggacaggtcg acgttgcgga cgacgcggcc caggtagcgc
      301 gggcaggcct tggaagccag cacctcgacc ggacgcactt cgtcatgcgc agcggcgacc
      361 ggggcaacgg agaccgcggt taccggggca ccgtagatgg cgccgacttc gcgggccaga
      421 ccggccagcg acaggcagtc gccacggtta ggggtcaggc cgatctcgat gctggcatcg
      481 tccagaccga ggtagtcacg caggctctgg ccgaccgggg cgtccgccgc cagctccatc
      541 aagccgttgt tgtcgtcgct gatctgcagc tcggaggccg agcagagcat gccctgggac
      601 tccacgccgc gcagcttggc ctgcttgatc ttgaagtcgc ccggcagctc ggcgccgatc
      661 atggcgaagg gaatcttgat gccggcgcgt gcattgggcg cgccgcagac cacctggaag
      721 gtggcgctgc cgtcgctgac ctggcatacg cgcagcttgt cggcgtccgg gtgttgttcg
      781 gcgctgagga tctcgccgac caccacgccg ctgaactggc cggcgaccgg gatcacggcg
      841 tccacttcca ggccgaccat ggacaggcgg gccaccagct catcgcgcga gactgccggg
      901 ttcacccagc cgcgcagcca ctgttcactg aatttcatgc tgtctgttct ccttaagcga
      961 attcgatacg gggcgtgcgg ctagcggaat tgcgccagga accgcaggtc gttatcgaag
     1021 aacaggcgca ggtcattgac gccataacgc agcatggcca ggcgctcgac ccccatgccg
     1081 aaggcgaagc cggagtactt ctccgggtcg atgccggaca tgcgcagcac gttcggatgc
     1141 accatgccgc agcccatcac ctccagccag ccggtctgct tgcacacgcg gcaacccttg
     1201 ccggagcaca tcacgcactg catgtcgact tcggccgatg gctcggtgaa ggggaagaag
     1261 gacggacgga aacgcacgcc cagcggcttc tcgaagaaca cgcggaggaa ctcctcgatg
     1321 gtgcccttga ggtcagcgaa gctgatgccc tcgtcgatca gcaggccttc gacctggtgg
     1381 aacatcggcg agtgggtgat atcggagtcg cagcggtaca cgcggccggg acagacgatg
     1441 cggatcggcg gctgctgcga ttccatggtg cgcacctgga ccggcgaggt gtgggtgcgc
     1501 agcagcatgt tcgcgttgaa atagaaggtg tcgtgcatcg cccgggctgg atgatggccg
     1561 gggatattga gcgcttcgaa gttgtggtag tcgtcttcga cttccggacc ctcggcgacg
     1621 ttgtagccga tatgggtgaa gaactgctcg acacgctcga gggtgcgggt gaccggatgc
     1681 aggccaccgg aggcctggcc gcggcccggc agggtcacgt caatacgctc ggacgccagc
     1741 ttctcggcga gcagggcctg ctcaagcacg gatttgcggg cgttcagggc gacctgaacc
     1801 tggtttttgg cggcattgat cagggcgccg gcctgcggac gctcttcggc agaaagtttg
     1861 ccgagggtct gcatcagggc ggtcagctcg cctttcttgc cgagatactg cacccggagc
     1921 tgttccaggg cgttgacgtc tgcggtgttt tgcacggcct cgagcgcttg cgagaccaat
     1981 gcatccaggt tttccatgta cggactccag atacgaaata ggggaagagc ttgaaggctc
     2041 ttcccctatc tttgacgttg ccaccgggcg aacccggtga ttgtcggggg acttaagcca
     2101 gaacggcctt agctttctcg acaatcgcag cgaacgccgc tttttcgttc actgccagat
     2161 cggccagaac cttgcgatcg atctcgatgg ccgctttctt caggccagcg atcagacggc
     2221 tgtaggacag accattctga cgagcaccgg cgttgatacg agcgatccac agagcgcgga
     2281 actgacgctt gcgctgacgg cggtcacggt aggcgtattg gcctgccttg atcacagcct
     2341 gcttggcaac gcggaacacg cgcgaacgcg cgccgtagta gcctttggcg agtttcagga
     2401 tttttttgtg acgagcacga gcgataacgc cacgcttaac acgagccatg agtaattacc
     2461 tctaaagaat cttgaccgga attaacgaac gcgcagcatg cgctcgactt ttgccttgtc
     2521 cgacggatgc atcagttcgc taccgcgaag ttgacgctta cgcttggtgg acattttggt
     2581 caggatgtgg ctcttgaaag cgtgcttgtg cttgtagccg gcagcagttt tcaggaaacg
     2641 cttagccgcg ccgcttttgg ttttcatctt tggcatgttt ggtactccgc attcattaac
     2701 aactgataac catcaggcct gccagtgccc gggaggttat ttacgcttct tgggagcgat
     2761 gaccatcatc agctggcgtc cttccagctt aggatgctgt tcgacggtgc cgatctcggc
     2821 gaggtcgttc tcgacccgct tcaacagctc catacccagc tcctggtggg ccatctcacg
     2881 accacggaat cgcaaggata ccttggcctt gtccccttca ttaaggaaac gtaccaggtt
     2941 gcgtagtttt acctggtaat ccccttcttc cgtccctgga cgaaacttga tttctttaat
     3001 ctgctgctgg tgctggttct tcttcgcgat cgcagcttgc ttcttcttct cgaacaggtg
     3061 cttgccgtag tccatgatac ggcaaaccgg cggaacggcg tcagcggaga tctctaccag
     3121 atccagcttg gcttcttcag ccacacgcag cgcttcgtca atcgaaacga tccctacctg
     3181 ctcgccatcc gcgccaatca ggcggacttc acgtgcggtg atgttctcgt tgatcggtgc
     3241 ctttgggacg gcccgcttat cctgtctcat ttcacgctta ataatgatta ctccgaatct
     3301 tggcgaccac gccgggaaac cgcttgcttg agctgttcgg cgaactgttc caagggcatg
     3361 gagcccagat cgacaccttc gcgggtacgc acagcaacgg atcgtgtctc aacttccctg
     3421 tcgccgataa ccaggagata gggaaccttg agcaaagtat gctcgcggat tttaaagccg
     3481 attttttcgt ttctcaagtc ggacttggca cgaaaaccgc tttggttgag agttttctcg
     3541 acctcgagag cgaaatcggc ctgcttgtcg gtgatgttca tgatcaccgc ctggaccggc
     3601 gccagccagg ccgggaacgc cccggcgtaa tgctcgatga gcatgccgat gaagcgttcg
     3661 aaggagccga gaatggcgcg gtgcaacatc accgggcggg tacggctgtt gtcctctgca
     3721 atgtagttgg cgtccaggcg ctccggcagg ttcggg
//
LOCUS       DATIHC010000426         2386 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10519, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000426 DATIHC010000000
VERSION     DATIHC010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2386)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2386)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2386
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10519"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..768
                     /locus_tag="VLF16_06865"
     CDS             <1..768
                     /locus_tag="VLF16_06865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HSX70638.1"
                     /translation="ALNCAAIPESLIESELFGYRGGSFTGASKKGMKGKLELANGGTV
                     FLDEIGDMPAHLQTRLLRVLAERELFPLGADAPVALDVQVVSATHQDLAAMIQARQFR
                     EDLFYRLSGMTLQLPALRERSDRDALIDTLLAGLDANLRLDAAVRERLRGHPWPGNIR
                     QLLNCLRYAAALAEDGRIDLDCLPAELQQTLPPPAAAAGTELAARLDDDEARHLYAAL
                     REQRWNISAVAEAFGIARSTLYRKMKKHGIVQPNELF"
     gene            complement(1056..>2386)
                     /gene="aldA"
                     /locus_tag="VLF16_06870"
     CDS             complement(1056..>2386)
                     /gene="aldA"
                     /locus_tag="VLF16_06870"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HSX70639.1"
                     /translation="PEASNDQVDRAIAAARKAQKGWAAKPAIERAGYLRRIAERVRAN
                     APRLAQIITREGGKVPALAEVEVNFTADYLDYMAEWARRLEGEVLTSDRAGEHIFLLR
                     KPLGVVAGILPWNFPFFLIARKMAPALLTGNTIVIKPSEETPINCFEFAKLVAEVDLP
                     TGVFNVVGGTGAGAGSALTSHAGVDLISFTGSVGTGSRIMAAAAPHITKLNLELGGKA
                     PAIVLADADLDLAVNAIKASRVINTGQVCNCAERVYVERKVADAFIDKIASAMAATRY
                     GDPSVEADLDMGPLINQAGLDKVAQMVRTATGQGARVITGGAVADKGRGFHYQPTVLA
                     GCTAEMEIMRKEIFGPVLPIQIVDDLDEAIALANDSEYGLTSSVYTRNLSAALKASRE
                     LDFGETYINRENFEAMQGFHAGTRKSGIGGADGKHGLYEYTHTHVIYAQE"
BASE COUNT          358 a          827 c          814 g          387 t
ORIGIN      
        1 gcactgaact gcgcggcgat cccggagagc ctgatcgaga gcgagctgtt cggttaccgc
       61 ggcggcagct tcaccggcgc cagcaagaag ggcatgaagg gcaagctgga gctggccaac
      121 ggcggcaccg tgtttctcga cgagatcggc gacatgccgg cgcacctgca gacccgcctg
      181 ctgcgcgtgc tggccgaacg cgaactgttc cccctcggcg ccgacgcgcc ggtggcgctg
      241 gacgtgcagg tggtgtccgc cacccaccag gacctggcgg cgatgatcca ggcccggcag
      301 ttccgcgagg acctgttcta ccgcctcagc ggcatgaccc tgcagctgcc ggccctgcgc
      361 gagcgcagcg accgcgatgc gctgatcgac acgctgctgg ccggcctgga cgcgaacctg
      421 cgcctggatg cggcggtacg cgagcgcctg cgcgggcatc cctggccggg caacatccgc
      481 cagttgctca actgcctgcg ttacgccgcc gccctcgccg aggacggccg catcgacctg
      541 gactgcctgc cggccgagct gcagcagacg ctcccaccgc ccgccgcggc ggccggcacc
      601 gagctggccg cgcgactgga cgacgacgag gcgcgccacc tctacgccgc cctgcgcgag
      661 cagcgctgga acatcagcgc ggtggccgag gccttcggca tcgcccgttc cacgctgtat
      721 cgcaagatga agaaacacgg catcgtccaa cccaacgagt tgttctgagc aaggcgcggc
      781 acccgccgcc gcgccgaatc gaaaacctgc acggtgcgca gggcatggat cgtagggtgc
      841 gccgtgcgca cctgtcggcc cgcgcgaagc gccgccgaaa ccttgcacct acccgttatg
      901 ccatcccgtt aatccgcccc gcccggtgcg cacggcgcac cctacgcatg gcggtcccca
      961 cttccgctcc tttttcctgg catcgcgcgc aatgccagga aaaaggagcg gaccggcgtc
     1021 ctggcggccg gcccgctcaa gcatgcgccg gggggttatt cctgcgcgta gatcacgtgg
     1081 gtatgggtgt actcgtacag gccgtgcttg ccgtcggcgc cgccgatgcc ggacttgcgc
     1141 gtgccggcgt ggaagccctg catggcctcg aagttctcgc ggttgatgta ggtttcgccg
     1201 aagtccagct cgcggctggc cttgagcgcg gcgctgaggt tgcgggtgta gaccgacgag
     1261 gtcaggccgt actcgctgtc gttggccagg gcgatggctt cgtcgaggtc gtcgacgatc
     1321 tggatcggca gcaccgggcc gaagatctcc ttgcgcatga tctccatctc cgccgtgcag
     1381 ccggccagca ccgtgggctg gtagtggaag ccgcggccct tgtcggccac cgcgccgccg
     1441 gtgatcaccc gggcgccctg cccggtcgcg gtgcgcacca tctgcgcgac cttgtccagg
     1501 ccggcctggt tgatcagcgg gcccatgtcc aggtcggcct cgacggaagg gtcgccgtag
     1561 cgggtggcgg ccatggccga ggcgatcttg tcgatgaagg cgtcggccac cttgcgctcg
     1621 acgtagacgc gctcggcgca gttgcacacc tgcccggtat tgatcacccg cgaagccttg
     1681 atggcgttca ccgccaggtc caggtcggcg tcggccagga cgatggccgg cgccttgccg
     1741 cccagttcca ggttgagctt ggtgatatgc ggcgcagcgg cggccatgat ccgcgaaccg
     1801 gtaccaacgc tgccggtgaa gctgatcaga tcgacaccgg catggctggt cagcgcacta
     1861 cctgcaccag cgccagtacc gccgactacg ttgaacacgc cagtcggcag gtccacttca
     1921 gccaccagct tggcgaactc gaagcagttg atcggggttt cctcgctggg cttgatcacg
     1981 atggtgttgc cggtcagcag cgccggcgcc atcttgcggg cgatgaggaa gaacgggaag
     2041 ttccacggca ggataccggc cactacgccc agcggcttgc gcagcaggaa gatgtgttcg
     2101 ccggcgcggt cgctggtcag cacctcgcct tccaggcggc gcgcccactc ggccatgtag
     2161 tcgaggtaat cggcggtgaa gttgacctcc acctcggcca gagccggcac cttgccgcct
     2221 tcgcgggtga tgatctgcgc caggcgcggg gcgttggcgc gcactctctc ggcgatgcgt
     2281 cgcaggtaac cggcacgctc gatggccggc ttggccgccc agcctttctg cgccttgcgt
     2341 gccgcggcga tggcgcggtc gacctggtcg ttgctggcct cgggaa
//
LOCUS       DATIHC010000427         1747 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33905, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000427 DATIHC010000000
VERSION     DATIHC010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1747
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33905"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            171..1400
                     /locus_tag="VLF16_06875"
     CDS             171..1400
                     /locus_tag="VLF16_06875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HSX70640.1"
                     /translation="MDFAYSPKVQELRERVTAFMEAHVYPAEAVFEEQVNEGDRWQPT
                     AIMEELKAKAKAEGLWNLFLPESEYGAGLTNMEYAPLAEIMGRSLIGAEPFNCSAPDT
                     GNMETLVRYASEAQKKQWLEPLLSGEIRSAFAMTEPGVASSDATNMQANAVRDGDEWV
                     INGRKWWTSGACDPRCKIMIFMGLTNPDAPRHQQHSMILVPSDTPGVKIVRPLPVFGY
                     DDAPHGHAEVVFENVRVPYENVLLGEGRGFEIAQGRLGPGRIHHCMRSVGMAERALEL
                     MCKRSVSRTAFGKPLARLGGNIDHIANSRIEINQARLLTLNAAYMMDTVGNKIAASEI
                     AQIKVVAPNVALNVIDRAIQIHGGAGVSNDFPLAYWYAMQRTLRLADGPDEVHRAAIG
                     KFEIGKYVPREAMKASR"
BASE COUNT          329 a          595 c          546 g          277 t
ORIGIN      
        1 acgatgaaga ggttgaggtc taccttgttc aagttcatgg tcgtctccgc ggcatcaagc
       61 cttatcgcat atcgcttatg aatgttgata aggcaggaaa atagcttaga taaatcgagg
      121 gtgctgttct agcatcattc cccatcgaag ccaaccatca aggtgtcccc atggatttcg
      181 cctactcccc caaggttcag gaactgcgtg aacgcgtcac cgccttcatg gaagcccacg
      241 tctacccggc cgaggccgtg ttcgaggaac aggtcaacga aggcgaccgc tggcagccga
      301 ccgcgatcat ggaggagctc aaggccaagg cgaaggccga gggtctgtgg aacctgttcc
      361 tgccggaatc cgagtacggc gccggcctga ccaacatgga atacgcgccg ctggccgaga
      421 tcatgggccg ctcgctgatc ggcgccgagc cgttcaactg ctccgcgccg gacaccggca
      481 acatggagac cctggtgcgc tacgccagcg aggcgcagaa gaagcagtgg ctggagccgc
      541 tgctgtccgg tgaaatccgc tccgccttcg ccatgaccga gccgggcgtg gcctcctcgg
      601 acgccaccaa catgcaggcc aacgccgtgc gcgatggtga tgagtgggtg atcaacggcc
      661 gcaagtggtg gacctccggc gcctgcgacc cgcgctgcaa gatcatgatc ttcatgggcc
      721 tgaccaaccc ggacgcgccg cgccaccagc agcactcgat gatcctggtg ccgagcgaca
      781 cccccggcgt gaagatcgtc cgcccgctgc cggtgttcgg ctacgacgac gccccacacg
      841 gccacgccga ggtggtgttc gagaacgtcc gcgtgccgta cgagaacgtg ctgctcggcg
      901 agggccgcgg cttcgagatc gcccagggcc gcctcggccc gggccgcatc caccattgca
      961 tgcgctccgt cggcatggcc gagcgcgcgc tggaactgat gtgcaagcgc tccgtcagcc
     1021 gcaccgcctt cggcaagccg ctggcacgcc tgggcggcaa catcgaccac atcgccaact
     1081 cgcgcatcga gatcaaccag gcccgcctgc tgaccctcaa cgccgcgtac atgatggaca
     1141 ccgtgggcaa caagatcgcc gccagcgaga tcgcccagat caaggtggtg gcgccgaacg
     1201 tcgcgctcaa cgtgatcgac cgtgccatcc agatccacgg cggcgccggc gtctccaacg
     1261 acttcccact ggcctactgg tacgccatgc agcgcaccct gcgcctggcc gacggcccgg
     1321 acgaagtgca ccgcgcggcc atcggcaagt tcgagatcgg caagtacgta ccgcgcgaag
     1381 cgatgaaagc cagccgctga tccccagcgc aacgcaaaag gcccgcacat gcgggccttt
     1441 tcgtttccag atccgattca tcctgaaccc gaccgtaacg cgaacgggga aagatcggcg
     1501 cggcctgcct atggtgggct gccttcggcg agggcgccct acgggttcat cctggctgcg
     1561 gggtgcgatg caacacctgt agggtggcct cgccgcgcag cggcagccca ccaggcagag
     1621 cagcaccgat cttccccgct caggttcatc ctcgtggctc gatgtggcca cgtggcgcgc
     1681 tgccttcggc gagggcgccc tacgggttca tcctgcgacg gtgcgaggcc acgcctgtag
     1741 ggtggcc
//
LOCUS       DATIHC010000428         6166 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_14742, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000428 DATIHC010000000
VERSION     DATIHC010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6166)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6166)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6166
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14742"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..664
                     /locus_tag="VLF16_06880"
     CDS             <1..664
                     /locus_tag="VLF16_06880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014336969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="OprD family outer membrane porin"
                     /protein_id="HSX70641.1"
                     /translation="GTSDRFNFGGGEYTFNDKRTLVGAWYAELQDVYQQQFYNLQHKQ
                     PVGDWTLGANLGYFIGKEEGSALAGDLDNKTAFGMFSAKLGGNTFIVGLQKLSGDSGW
                     MRVNGTSGGTLANDSFNNSYDNPEERSWQLRHDYNFAALGLPGLTLMNRYISGDNIEI
                     AGTDDGEEWGRESELTYVVQSGPLKSLGLKWRNSSLRKDWAGSRSFDENRVIINFPLD
                     IL"
     gene            complement(855..1781)
                     /locus_tag="VLF16_06885"
     CDS             complement(855..1781)
                     /locus_tag="VLF16_06885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HSX70642.1"
                     /translation="MNPRLLQIGPLSEGLQARLAQWPVTSLWREPADHLSRHGGDYDV
                     VVTSARHGLSEAQLAQLPRVRAICSFGVGSDAICVAAAQARGIRVSVTPDVLNDCVAD
                     LALGLILATARQLPASDRFVREGRWAAGAYPLTRRVSGKRLGIVGLGRIGEQIALRAT
                     GFAMPMRYHSRRPHPQHGDSHEPDLLALARWADFLVLACPGGAATRHLIDAAVLDALG
                     PQGVLINIARGSVVDEAALVAALRDGRLGGAGLDVFEHEPQVPSELFELPNVVLLPHV
                     GSGTVETRQAMEQLLLDNLAAFLRDGEVLTPP"
     gene            complement(1783..3339)
                     /gene="garD"
                     /locus_tag="VLF16_06890"
     CDS             complement(1783..3339)
                     /gene="garD"
                     /locus_tag="VLF16_06890"
                     /EC_number="4.2.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003241559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008867 - galactarate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0046392 - galactarate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="galactarate dehydratase"
                     /protein_id="HSX70643.1"
                     /translation="MQLIPHQDSPRYIRLHPADNVGVVVNAQGVAAGGRFDDGLVAVE
                     GIPQSHKVALLDLAEGAEVVRYGEVIGYALRPIPAGSWVTEAHLRMPEPPALDNLPKA
                     TLSAPVAEPLEGFTFEGFRNPDGTVGTRNILGVTTTVQCVVGVLDHVVERVRKELLPR
                     YPHVDDVVALSHSYGCGVAINAPDAVVPIRTLYNISRNPNLGGQALVIGLGCEKLQAN
                     QLMDGDALTNGMDEEDWLFRLQDSGTGFTGMVEQIMGMIEARLQVLNERRRETVPASE
                     LVVGMQCGGSDAFSGITANPALGVAADLLVRAGATVMFSENTEVRDGIHLLTPRAASV
                     EVADALIREMDWYDRYLQRGMADRSANTTPGNKKGGLNNIVEKAMGSIAKSGSSAIAG
                     VVSPGERIRGKGLWFCATPASDFICGTLQIAAGMNLHIFTTGRGTPYGLAMVPVIKVA
                     TRSQLAERWPDLIDVDAGQITSGRMSLEEMGWHIFRLYLDVASGRSETCAERLRLHND
                     LTLFNPAPVT"
     gene            complement(3363..4706)
                     /locus_tag="VLF16_06895"
     CDS             complement(3363..4706)
                     /locus_tag="VLF16_06895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012699205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSX70644.1"
                     /translation="MHAVKPGRVRYSILLMLFLVTTVTFADRSSLSIAGAALQADLGI
                     DAVTLGYIFSAFGWAYVIGQIPGGWLFDRFGAKRVYFTTLLCWSLFTLAQGLVGVLPL
                     AWAVASLFLLRLAVGFAGAPCFPGNARIIAAWFPTGERATATALSSSAQYAATALFAP
                     LMGWVVQALGWEWVFIVLGSLGLVLCGVWLKAMHGPRDHPRLGAAEFAHIEAGGALVD
                     LDARAPGAGGSQWRHLKLLLTQRTLVGVYLGQYCNNAITYFFLTWFPVYLVQARGMSI
                     LNAGFMAALPAIAGFVGGLLGGLFSDGLLRRGFSLTLARKLPIVSGMLLSSALALCIF
                     VHSDAAVVALMALAFFGKGFGSHGWTLVADTSPRQIVGLSGGLFNTFGNLAAITTPIV
                     VGYLVSHTGSFDAALLYVGANALLAVVSYLFIVGRIHRIELAEAPAGAGIPGAQS"
     gene            complement(4771..6114)
                     /gene="gudD"
                     /locus_tag="VLF16_06900"
     CDS             complement(4771..6114)
                     /gene="gudD"
                     /locus_tag="VLF16_06900"
                     /EC_number="4.2.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013714391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008872 - glucarate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0019394 - glucarate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate dehydratase"
                     /protein_id="HSX70645.1"
                     /translation="MNTESRAATPRIVELQVVPVAGQDSMLLNLSGAHGPYFTRNILI
                     LKDSAGHVGVGEVPGGEAIRQTLEDARSLLLGEPVGDYNALLNKARRAFEGRDVGGRG
                     LQTFDLRIAIHAVTALESALLDLLGQHLGVSVAALLGDGQQRDAVEMLGYLFFIADKG
                     RTDLGYREERDAEDAWCRVRNETALTPDSIVRQAEAAHARYGFNDFKLKGGVLQGEAE
                     VEAIRALAERFPQARITLDPNGAWSLKEAVSLCRDLHGVLAYAEDPCGAENGYSGREV
                     MAEFRRATGLPTATNMIATDWRQMGHTISLQSVDIPLADPHFWTMAGSVRVAQMCHDW
                     GLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQDGQYLTRNPLRIEGGLVQ
                     VPKTPGLGVELDWDALAKAHELYKTQGLGARDDAIAMQYLIPNWTFDNKRPCMVR"
BASE COUNT         1018 a         2099 c         2148 g          901 t
ORIGIN      
        1 cggcacctct gaccgcttca acttcggcgg cggcgaatac accttcaacg acaagcgcac
       61 cctggtcggc gcctggtacg ccgagctgca ggacgtctac cagcagcagt tctacaacct
      121 gcagcacaag cagccggtgg gcgactggac cctgggcgcc aacctcggct acttcatcgg
      181 caaggaagag ggcagcgccc tggccggcga cctggacaac aagaccgcgt tcggcatgtt
      241 ctccgccaag ctcggcggca acaccttcat cgtcggtctg cagaagctca gcggcgacag
      301 cggctggatg cgcgtcaacg gcaccagcgg cggcaccctg gccaacgaca gcttcaacaa
      361 cagctacgac aaccccgaag agcgttcctg gcagctgcgc cacgactaca acttcgccgc
      421 cctcggcctg ccgggcctga ccctgatgaa ccgctacatc agcggcgaca acatcgagat
      481 cgccggcacc gacgacggcg aagagtgggg ccgcgagtcc gagctgacct acgtggtgca
      541 gtccggcccg ctgaagagcc tcggcctgaa gtggcgcaac tcctcgctgc gcaaggactg
      601 ggccggctcg cgcagcttcg acgagaaccg cgtgatcatc aacttcccgc tcgacatcct
      661 ctgattcctc ggctgctcct gcagcacgct tcggcccgtc tctcgcgacg ggcctttttt
      721 tgcgccaaaa aaaaacggcg cacttgtggt gcgccgctac tgcaataacc cagtacaact
      781 agcgtggatg aagcgacggc gcttgtggcg ccgccgccta tagggcccgg ctcccggcag
      841 gagccgcgcc atattcaggg cggggtgagc acctcgccgt cgcgcaggaa ggccgccagg
      901 ttgtcgagca gcaactgctc catggcctgg cgggtttcca cggtgccgct gccgacatgc
      961 ggcagcagga ccacgttggg cagctcgaac agttccgacg gcacctgcgg ctcgtgctcg
     1021 aacacgtcca ggccggcgcc gccgaggcga ccgtcgcgca gcgcggcgac cagcgccgcc
     1081 tcgtcgacca cgctgccgcg ggcgatgttg atcagcacac cctgcggacc cagggcgtcc
     1141 agcaccgcgg catcgatgag gtggcgcgta gcggcgccgc ccgggcaggc cagcaccagg
     1201 aagtccgccc agcgggccag cgccagcagg tcgggctcgt ggctgtcgcc gtgctgcggg
     1261 tgcggccggc ggctgtggta gcgcatcggc atggcgaagc cggtggcgcg cagggcgatc
     1321 tgctcgccga tgcgccccag gccgacgatg cccaggcgct tgccgctgac gcgccgggtc
     1381 agcggatagg cgcctgcggc ccagcgcccc tcgcggacga aacggtcgct ggccggcagt
     1441 tgccgcgccg tggccaggat cagacccagg gccaggtcgg cgacgcagtc gttgagcacg
     1501 tccggggtga cgctgacgcg aatgccgcgg gcctgggcgg cggccacgca gatcgcatcg
     1561 ctgccgacgc cgaagctgca gatcgcgcgc acccggggca gctgcgccag ctgcgcctcg
     1621 ctcaagccgt ggcgcgccga ggtgacgacc acgtcgtagt cgccgccatg gcggctcagg
     1681 tggtcggccg gctcgcgcca cagcgaggtc accggccact gcgccagccg ggcctgcagg
     1741 ccctcgctca gcgggccaat ttgcaacagt cgtgggttca tttcaggtca ccggtgccgg
     1801 gttgaacagg gtcaggtcat tgtgcaggcg caggcgctcg gcacaggtct cgctgcgccc
     1861 gctggccacg tccaggtaca gccggaagat gtgccagccc atctcctcga ggctcatgcg
     1921 cccggaggtg atctgcccgg cgtcgacgtc gatcaggtcc ggccagcgct cggccagctg
     1981 gctgcgcgtg gccaccttga tcaccggcac catggccagg ccgtaaggcg tgccgcggcc
     2041 ggtggtgaag atgtgcagat tcatgccggc ggcgatctgc agggtgccgc agatgaagtc
     2101 gctggcgggc gtggcgcaga accacaagcc cttgccgcgg atgcgctcgc ccggcgagac
     2161 caccccggcg atggcgctgg agccggactt ggcgatcgag cccatggcct tctcgacgat
     2221 gttgttcagc ccgcccttct tgttgcccgg cgtggtgttg gcgctgcgat cggccatgcc
     2281 gcgctgcagg tagcggtcgt accagtccat ctcgcggata agtgcatcgg ccacctccac
     2341 cgaggcggca cgcggggtga gcaggtggat gccgtcgcgc acctcggtgt tctccgagaa
     2401 catcaccgtg gcgccggcgc gcaccagcag gtcggcggcc acgcccagcg ccgggttggc
     2461 ggtgatgccg gagaaggcgt cgctgccgcc gcactgcatg ccgaccacca gctcggaggc
     2521 cggcaccgtc tcgcgacggc gctcgttcag tacctgcaga cgcgcctcga tcatgcccat
     2581 gatctgctcg accatgccgg tgaagccggt gccggaatcc tgcaggcgga acagccaatc
     2641 ttcctcgtcc atgccattgg tcagcgcatc gccatccatc agctggttgg cctgcagttt
     2701 ctcgcagccc aggccgatga ccagcgcctg gccgcccagg ttggggttgc ggctgatgtt
     2761 gtacagggtg cggatcggca ccaccgcgtc cggcgcgttg atcgccacgc cgcagccgta
     2821 gctgtgcgac agggcgacca cgtcgtccac gtgcgggtac ctcggcagga gctccttgcg
     2881 cacgcgctcg accacatggt cgagcacgcc gaccacgcac tgcacggtgg tggtcacgcc
     2941 gaggatgttg cgcgtgccga cggtgccgtc cggattgcgg aagccctcga aggtgaagcc
     3001 ttccagcggc tcggccacgg gcgccgacag ggtcgccttg ggcaggttgt ccagcgccgg
     3061 cggctcgggc atgcgcagat gcgcctcggt gacccagctg ccggccggga tcggccgcag
     3121 cgcatagccg atcacctcgc cgtagcgcac cacctcggcg ccttcggcga ggtcgagcag
     3181 cgccaccttg tggctctgcg ggatgccctc gacggcgacc aggccgtcgt cgaagcgtcc
     3241 gcccgcggcg acgccctggg cgttgaccac cacgccgaca ttgtcggccg ggtgcaggcg
     3301 gatgtagcgc ggcgagtcct gatggggaat caactgcatg gacatgctct cctctgacga
     3361 cgtcaggact gggcgccggg aatgccggcg ccggctggcg cttcggccag ctcgatacgg
     3421 tgaatacgac cgacgatgaa caggtaactg accaccgcca gcaaggcgtt ggcgccgaca
     3481 tagagcagcg ccgcatcgaa cgatcccgtg tggctgacca ggtagccgac cacgatgggc
     3541 gtggtgatgg cggccaggtt gccgaaggtg ttgaacagac cgccggacag cccgacgatc
     3601 tgccgcggcg aggtatcggc caccagcgtc cagccgtggg agccgaagcc cttgccgaag
     3661 aacgccaggg ccatcagggc caccacggcg gcgtcgctgt gcacgaagat gcacagcgcc
     3721 agcgcgctcg acagcagcat gccgctgacg atcggcagct tgcgcgccag ggtcagcgaa
     3781 aaaccgcggc gcagcagacc gtcggagaac agcccgccga gcaggccgcc gacgaacccg
     3841 gcgatggccg gcaacgccgc catgaagccg gcgttgagaa tgctcatgcc acgcgcctgc
     3901 accaggtaca ccggaaacca ggtcaggaag aaataggtga tggcgttgtt gcagtactgg
     3961 ccgaggtaca ccccgaccag cgtgcgctgg gtcagcagca gcttcaaatg gcgccattgc
     4021 gagccacccg cgccgggcgc ccgtgcgtcc aggtcgacca gcgcgccgcc ggcctcgata
     4081 tgagcgaact cggccgcccc caggcgcggg tggtcgcgcg gcccgtgcat ggccttgagc
     4141 cacacgccgc acagcaccag gccaaggctg ccgagcacga tgaacaccca ctcccagccc
     4201 agggcctgca ccacccagcc catcagcggg gcgaacagcg cggtagcggc atactgcgcg
     4261 gagctggaca gggccgtggc cgtggcccgc tcgccggtgg ggaaccaggc ggcgatgatc
     4321 cgcgcattgc cggggaagca gggcgcgccg gcgaagccca ccgccaggcg cagcagaaac
     4381 aggctggcca ccgcccaggc cagcggcagc acgccgacca ggccctgggc cagggtgaac
     4441 agcgaccagc acagcagggt ggtgaagtag acgcgcttgg cgccgaaacg gtcgaacagc
     4501 cagccgccgg gaatctggcc gatcacatag gcccagccga aggcggaaaa gatgtagccg
     4561 agcgtcaccg cgtcgatgcc cagatccgcc tgcagcgccg cgccggcaat cgacagactg
     4621 gagcggtcgg cgaaggtgac cgtggtgacg aggaacagca tgagcaggat cgagtagcgc
     4681 acccgtcccg gttttactgc atgcatctgg cgaactcggc agtgattcga actggtccgg
     4741 cccggcgcgc agggcaccgg gcccgaccgt ttagcgcacc atgcagggac gcttgttatc
     4801 gaacgtccag ttggggatca ggtactgcat ggcgatggca tcgtcacgcg cgcccagccc
     4861 ctgggtcttg tacagctcgt gggccttggc cagggcatcc cagtccagct ccacgcccag
     4921 gcccggagtc ttcggcacct gcaccaggcc gccctcgatg cgcagcgggt tgcgcgtcag
     4981 gtactgcccg tcctgccaga tccagtgggt gtcgatcgcg gtgatcttgc ccggcgcggc
     5041 ggcggccaca tgggtgaaca tggccaggga gatgtcgaag tggttgttcg aatgcgagcc
     5101 ccaggtcagg ccccagtcgt ggcacatctg cgccacgcgc acggagccgg ccatggtcca
     5161 gaagtgcggg tcggccagcg gaatgtcgac cgactgcagg gagatggtgt ggcccatctg
     5221 ccgccagtcg gtggcgatca tgttggtcgc ggtcggcagg ccggtggcgc gacggaactc
     5281 ggccatcacc tcgcggccgg aatagccgtt ctcggcgcca caaggatctt ccgcgtaggc
     5341 cagcacgccg tgcaggtcgc ggcacagcga taccgcctcc ttcagcgacc aggcaccgtt
     5401 ggggtcgagg gtgatgcgcg cctgggggaa gcgctcggcc agggcgcgaa tcgcctcgac
     5461 ctccgcctcg ccctggagca cgccgccctt gagcttgaag tcgttgaaac cgtagcgcgc
     5521 gtgggccgcc tcggcctggc ggacgatgct gtccggggtc agcgcggttt cgttgcgcac
     5581 ccggcaccag gcgtcttcgg cgtcgcgttc ttcgcggtag ccgaggtcgg tccggccctt
     5641 gtcggcgatg aagaacaggt agccgagcat ttccaccgcg tcgcgctgct ggccgtcgcc
     5701 gagcagggcg gccaccgaca cgccgaggtg ctggccgagc aggtcgagca gcgccgactc
     5761 cagggcggtg accgcgtgga tggcgatgcg caggtcgaag gtctgcaggc cgcggccgcc
     5821 gacgtcgcgg ccttcgaagg cgcggcgggc cttgttgagc agtgcgttgt agtcgccgac
     5881 aggctcgccg agcagcaggc tgcgggcgtc ttccagggtc tggcggatgg cttcgccacc
     5941 ggggacctcg ccgacaccga catggccggc gctgtccttg agaatgagga tgttgcgggt
     6001 gaagtacggg ccgtgggcgc cgctgaggtt gagcaacatg ctgtcctggc cggcgaccgg
     6061 gaccacttgc agctcgacga tgcgcggcgt ggccgcacgc gattctgtgt tcattgccgt
     6121 tcccttttat tgttgttcgg gagtggatca atggcggaat cgggcg
//
LOCUS       DATIHC010000429         2152 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19837, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000429 DATIHC010000000
VERSION     DATIHC010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2152
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19837"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..709)
                     /locus_tag="VLF16_06905"
     CDS             complement(<1..709)
                     /locus_tag="VLF16_06905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017677936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSX70646.1"
                     /translation="MPHFEHRDCRLHYEDHGQGEPVLLVHGLGSSIQDWEYQIPHLLQ
                     RRRVLALDLRGHGRSDKPRERYSIAAFAEDVAALIEHLGLPNVHLVGISMGGMVGFQL
                     GVERPELLRSLTIVNSEPEVKARSAADWWMLAKRWTLSRLLSMETIGKGLGRLLFPRP
                     EQAELRAKVEQRWPQNDKRAYLAALDAIIGWGVRERLSAIACPVLVVSADRDYTPVAT
                     KEAYVRELPNARLVVIEH"
     gene            complement(721..1647)
                     /locus_tag="VLF16_06910"
     CDS             complement(721..1647)
                     /locus_tag="VLF16_06910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003441671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX70647.1"
                     /translation="MKAPRVTLEQWRTLQAVVDHGGFAQAAEALHRSQSSVSYTVARM
                     QEQLGAPLLRIDGRKAVLTEAGEVLLRRSRQLVKQASQLEELAHHMEQGWEAEVRLVV
                     DAAYPTANIVRTLSAFMPQSRGCRVRLREEVLSGVEEVLREGSADLAISALNITGYLP
                     IELGEVEFLAVAHPEHPLHRLQRPVTFQDLEGQMQVVTRDSGRVQPRDAGWLGAEQRW
                     TVGSLPTARTFVSSGLGFAWLPHHLIARELEEGLLKPLPMEQGDTRRPRFFLYSNKDK
                     VLGPATQILIELIKNFDGAPLEAPFAAPLPGV"
     gene            1698..2012
                     /locus_tag="VLF16_06915"
     CDS             1698..2012
                     /locus_tag="VLF16_06915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010490304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoglycerate kinase"
                     /protein_id="HSX70648.1"
                     /translation="MKNCCLALLALMPLTAAAYPTELEKQLNGAEVSASIQDIDRNIG
                     GLTLYNYGLAPAKCDARFRNGPEAPRNRSAELKPGESVTLTVRFARDIIKLRVDLTCE
                     QS"
BASE COUNT          329 a          732 c          729 g          362 t
ORIGIN      
        1 agtgctcgat caccaccagg cgggcgttcg gcagttcgcg cacgtaggcc tccttggtgg
       61 ccaccggggt gtagtcgcgg tcggcgctga ccaccagcac cgggcaggcg atggcggaca
      121 ggcgctcgcg cacgccccag ccgatgatcg cgtcgagggc ggcgaggtag gcgcgcttgt
      181 cgttctgcgg ccagcgctgt tccaccttgg cgcgcagctc ggcctgttcc ggccgcggga
      241 acagcaggcg gccgaggccc ttgccgatgg tctccatgct cagcaggcgc gacagcgtcc
      301 agcgcttggc cagcatccac cagtcggcgg cgctgcgggc cttcacctcg ggctcgctgt
      361 tgacgatggt caggctgcgc agcagctcgg gacgctcgac gccgagctgg aagccgacca
      421 tgccgcccat ggagatgccc acgaggtgca cgttcggcag gcccaggtgc tcgatcagcg
      481 ccgccacgtc ctcggcgaag gcggcgatgc tgtagcgctc gcgcggcttg tcggaacgac
      541 cgtggccgcg caggtcgagg gccagcacgc ggcgtcgctg cagcaggtgc gggatctggt
      601 attcccagtc ctgaatgctg gagcccaggc cgtgcaccag cagcacgggt tcgccctggc
      661 cgtggtcctc gtagtgcagc cggcagtcgc gatgttcgaa atggggcatg gccgggttcc
      721 tcacacgccg ggcagcggcg cggcgaaggg cgcctcgagc ggcgcgccgt cgaagttctt
      781 gatcagttcg atgaggatct gcgtggccgg gccgagcacc ttgtccttgt tgctgtacag
      841 gaagaagcgc ggccggcggg tatcgccctg ttccatcggc agcggcttga gcaggccctc
      901 ctccagttcg cgggcgatca ggtgatgggg cagccaggcg aagcccaggc cgctgctgac
      961 gaaggtgcgc gcggtgggca ggctgccgac cgtccagcgc tgctcggcgc cgagccagcc
     1021 ggcgtcgcgc ggctgcacgc ggccgctgtc gcgggtcacc acctgcatct ggccttccag
     1081 gtcctggaag gtcaccgggc gttgcaggcg atgcagcgga tgttccgggt gggccacggc
     1141 gaggaactcc acctcgccca gctcgatggg caggtagccg gtgatgttga gcgcgctgat
     1201 ggccaggtcc gccgagcctt cgcgcagtac ctcctcgacc ccggacagca cttcctcgcg
     1261 caggcgcacg cggcagccgc ggctctgcgg catgaaggcg gagagggtgc gcacgatgtt
     1321 ggcggtaggg taggcggcgt ccaccaccag gcgcacttcg gcttcccagc cctgttccat
     1381 gtggtgggcc agctcctcca gctggctggc ctgcttgacc agctgccgcg agcggcgcag
     1441 cagcacttcg ccggcttcgg tgagcaccgc cttgcgcccg tcgatgcgca gcagcggcgc
     1501 gccgagctgt tcctgcatgc gcgccaccgt gtagctcacc gacgactgtg agcggtgcag
     1561 cgcctcggcg gcctgggcga atccgccgtg gtccaccacc gcctgcaggg tgcgccattg
     1621 ttccagggtg acacggggcg ctttcatcgc cgcttcctct tctctaatct ggcacccctc
     1681 gaacaaggag taagccgatg aaaaattgct gcctggcgct gctcgcgctg atgccgctga
     1741 ccgccgccgc ctatccgacc gaactggaaa agcagctcaa cggtgccgag gtgtccgcct
     1801 cgatccagga catcgaccgc aacatcggcg gcctcaccct gtacaactac ggtctcgccc
     1861 ccgccaagtg cgacgcgcgc ttccgcaacg gtcccgaggc gccgcgcaac cgctcggcgg
     1921 agctcaagcc gggtgagagc gtgaccctga ccgtgcgctt cgcccgcgac atcatcaagc
     1981 tgcgggtcga cctcacgtgc gagcagagct gagcctagag ccaggctccc cttaaatcaa
     2041 ctttgttgat gatttgaagc gtatttttgc gctttttaat cttattggct gaccataacc
     2101 ttcgctccat cgaaacaaac aaccccgatg gagttagccc aatgtcccgc at
//
LOCUS       DATIHC010000430         2644 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31530, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000430 DATIHC010000000
VERSION     DATIHC010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2644
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31530"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..130
                     /locus_tag="VLF16_06920"
     CDS             <1..130
                     /locus_tag="VLF16_06920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70649.1"
                     /translation="YKGGENPYEGKKNKLTERQVNRKKRLMSHHKKAEKKRKDKKR"
     gene            259..1407
                     /locus_tag="VLF16_06925"
     CDS             259..1407
                     /locus_tag="VLF16_06925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HSX70650.1"
                     /translation="MLASKLPNVGTTIFTRMSQLAAEVGAINLSQGFPDFDGPQALRE
                     VVARHVLEGRNQYCPMTGLPSLRQQVAAKIARSYGVQRDADSEITITPGATEAIFCAV
                     QALIHPGDEAIVLDPCYDSYEPSVELAGGRCVHVPLALPDFAVDWQRLADAITERTRL
                     IVLNSPHNPSGALLTRDDLDRLAVLIRGRDIHIISDEVYEHLIFDGARHASVLAHEEL
                     YARAFVVSSFGKTYHVTGWKTGYVVAPPLLTAELRKIHQYVNFCGVTPLQHALADFMA
                     VSPEHVEELPAFYQAKRDLFCDLLAGSRFRFTRAPGTYFQLADYSAIRPDLDDVAMAE
                     WLTREHGVAAIPVSVFYQQAPAEMRLVRFCFAKREETLRLAAEKLCAI"
     gene            1395..2192
                     /locus_tag="VLF16_06930"
     CDS             1395..2192
                     /locus_tag="VLF16_06930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HSX70651.1"
                     /translation="MRDLSQLPDLELALIQSELDWHDAAANRARFEPLLEQARGADLV
                     VVPEMFSTGFSMHSAELAEPEDGPTTVWLREQARRIGAVVTGSLIIQAADGSYRNRLL
                     WARPDGSLAHYDKRHLFRMAGEHKHYSAGEERVLLEVKGWQVRPLICYDLRFPVWSRD
                     PHDTDLLLYTANWPGARRHHWNRLLPARAIENLCYVAAVNRIGSDGNGHPYSGDSQVL
                     DFQGEPLLAPGDAPGVFRVRLSASELVSYRQRFPAFLDADTFHLSPH"
     gene            2204..2638
                     /locus_tag="VLF16_06935"
     CDS             2204..2638
                     /locus_tag="VLF16_06935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003129793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70652.1"
                     /translation="MDANPYRAPEADLVVPQQAATGPLYRMSAVGIATFFGTPLAGAF
                     ITTRNLRALGLHGQVQKTWWMGVGLLVAVMVVGYWLPESASMGLTVGQVFAMHYYAKP
                     LFGDTVAGHGGPFYSNWRAFGISLLFLLGVIAALIPIALLLV"
BASE COUNT          425 a          947 c          841 g          431 t
ORIGIN      
        1 gtacaagggc ggcgagaacc cctacgaggg caagaagaac aagctcaccg agcgccaggt
       61 gaaccgcaag aagcgcctga tgagccacca caagaaggcc gagaagaagc gcaaggacaa
      121 gaagcgctga ttcactgccg ttctacccca aggcgcagca gcttcggctc ctgcgccttt
      181 ttcatgggcg ccgctgctgc atcccgagcg ggccatcggc tatcctcgcg gctcgcacca
      241 cgccagcagg aagtcccgat gctcgccagc aagctgccca atgtcggcac caccatcttc
      301 acccgcatgt cccagctcgc cgcggaagtc ggcgccatca acctgtccca gggcttcccc
      361 gacttcgacg gcccgcaggc cctgcgcgag gtcgtggccc gccatgtgct ggaggggcgc
      421 aaccagtact gcccgatgac cggcctgccg agcctgcgcc agcaggtggc ggccaagatc
      481 gcccgcagct atggcgtgca acgcgatgcc gacagcgaga tcaccatcac gcccggcgcc
      541 accgaggcga tcttctgcgc ggtgcaggcg ctgatccatc cgggcgacga ggccatcgtc
      601 ctcgacccct gctacgacag ctacgagccc tcggtggaac tggccggcgg ccgttgcgtg
      661 catgtgccgc tggccctgcc ggacttcgcc gtggactggc agcgcctggc cgatgcgatc
      721 accgaacgta cccggctgat cgtcctcaac tcgccgcaca accccagcgg cgcgctgctc
      781 actcgtgacg acctggaccg cctggccgtg ctgatccgcg gccgcgacat ccacatcatc
      841 agcgacgagg tctacgagca cctgatcttc gacggcgccc gccacgccag cgtgctggcc
      901 cacgaggagc tgtatgccag ggccttcgtg gtcagctcgt tcggcaagac ctaccacgtc
      961 accggctgga agaccggcta cgtggtggcg ccgcctctgc tgaccgccga gctgcgcaag
     1021 atccaccaat acgtcaactt ctgtggcgtg actccgctgc agcacgccct ggccgacttc
     1081 atggcggtaa gccccgagca cgtcgaggag ctgccggcct tctaccaggc caagcgcgac
     1141 ctgttctgcg acctgctggc cggctcgcgt ttccgcttta cccgtgcacc gggcacctac
     1201 ttccagttgg ccgactattc ggcgatccgc ccggacctgg acgacgtggc catggccgaa
     1261 tggctgaccc gcgagcacgg tgtggcggcc attccggtgt cggtgttcta ccagcaggcc
     1321 ccggccgaga tgcgcctggt gcgcttctgc ttcgccaaac gcgaggagac gctgcgcctg
     1381 gcagcggaaa aactatgcgc gatctgagcc aactgcccga cctggagctg gcgctgatcc
     1441 agagcgaact ggactggcac gacgccgccg ccaaccgcgc gcgcttcgag ccgttgctgg
     1501 aacaggcccg tggcgccgac ctggtggtgg tgccggagat gttcagcacc ggcttctcca
     1561 tgcattcggc cgagctggcc gagcctgagg acggtccgac cacggtttgg ctgcgtgagc
     1621 aggctcggcg tatcggtgcg gtggtcaccg gcagcctgat catccaggcc gccgacggca
     1681 gctaccgcaa ccgcctgctg tgggcgcgcc cggatggttc gctggcgcat tacgacaagc
     1741 gccacctgtt ccgcatggcc ggcgagcaca agcactacag cgccggcgag gagcgggtgc
     1801 tgctggaggt gaagggttgg caggtacgcc cgctgatctg ctacgacctg cgcttcccgg
     1861 tgtggagccg cgacccacac gacaccgacc tgctgctcta caccgccaac tggccgggcg
     1921 cgcgtcgcca ccactggaac cgcctgctgc cggcgcgggc catcgagaac ctgtgctacg
     1981 tcgccgcggt gaaccgcatc ggcagcgacg gcaatggcca tccctacagc ggcgactcgc
     2041 aggtgctgga cttccagggc gagcccctgc tggcgccggg cgatgccccc ggcgtgttcc
     2101 gcgtgcgcct gtcggccagt gagctggtga gctaccgaca gcgcttcccg gcgttcctgg
     2161 atgccgacac ctttcacctc tcgccccact gaaggagttt tgcatggatg ccaatcccta
     2221 ccgcgcaccc gaggccgatc tggtcgttcc ccagcaggcc gccaccggcc cgctctaccg
     2281 catgagcgcg gtgggcatcg cgaccttctt cggcacgccg ctggccggcg ccttcatcac
     2341 cacccgcaac ctgcgggcac tcggtcttca cgggcaggta caaaagacct ggtggatggg
     2401 cgtcggcctg ctcgtggcgg tcatggtggt cggttactgg ctgccggaga gcgccagcat
     2461 gggcctcacc gtcggccagg tgttcgcgat gcactactac gccaagccgc tgttcggcga
     2521 cactgtggcc gggcatggcg gaccgttcta ttccaactgg cgggccttcg gcatctcgct
     2581 gctgttcctg ctcggggtga tcgcggccct gatccccatt gccctgctgc tggtctgaac
     2641 cgcc
//
LOCUS       DATIHC010000431         3834 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_44903, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000431 DATIHC010000000
VERSION     DATIHC010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3834
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44903"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1496
                     /locus_tag="VLF16_06940"
     CDS             <1..1496
                     /locus_tag="VLF16_06940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019340627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HSX70653.1"
                     /translation="PAQPNPADLAVKLLQPLDGTLMPGETAKAEVIVAKEAAQNFQLL
                     LKLTLDNGKQATLEASSTRPLAQGTTLAVTALSDTRLAVALQGSSGGTLGALDLEQVP
                     AGTLLQGKVEAREQIAQAKGQQALYRVVVSLLNTPLAGSKLDVETPLPLALGSLVTAQ
                     VQGSQSLSFLPLSGRLDQLVLGQQLAAQQARQGSLEGLFKGLQGMVQQGDLSPDLRAT
                     IDKLLGLLPDGKQLGTADGLAKALEQSGVFLEAKLLGGQAQQLPQDLKASLLRLVAQL
                     LPGLPGGAAMPATSAGGALAQALPAFARNALGALGQANLRQQAMSFPLPSRLLQSMDG
                     EPDLEILLKLAAAAVSRLQTHQLSSLAQTQTTPEGNLLTTWQLELPMRNQHDVVPLQV
                     KLQREEPGPDGRKEQKEALWRIDLAFDLDPLGPLQVQAQLLRGALSSQLWAERAETVK
                     LIDQELDNLRQRLLSAGLEVGELSCCQGMPPQGPKTHLEQRWVDETA"
     gene            1493..1846
                     /locus_tag="VLF16_06945"
     CDS             1493..1846
                     /locus_tag="VLF16_06945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020294173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EscU/YscU/HrcU family type III secretion system
                     export apparatus switch protein"
                     /protein_id="HSX70654.1"
                     /translation="MKQDKAPRQAIALSYDGSNAPSLTAKGDDELAEAILAIAREYEV
                     PIYENAELVRLLARMELGDAIPEPLYRSIAEIIAFAWHLKGKRPEGFAEDPAERDVTP
                     PPGSALPPLLAAPRE"
     gene            complement(1791..2267)
                     /locus_tag="VLF16_06950"
     CDS             complement(1791..2267)
                     /locus_tag="VLF16_06950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014597053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HSX70655.1"
                     /translation="MRSGLIFLLLLVLPPAQASEAPLQVSGATTISVMQARQLYEYGV
                     LFIDVRPSRQWGWGHVHGALHLELDGRFAELQGTDWPREMPLVLYCDSEFCPHSAEAA
                     RRAVDWGFQQIYYFRGGYFAWQLLDFPQGKGQEGELFAFILGAPPTAAGEPNPVVE"
     gene            complement(2391..2801)
                     /locus_tag="VLF16_06955"
     CDS             complement(2391..2801)
                     /locus_tag="VLF16_06955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2802 domain-containing protein"
                     /protein_id="HSX70656.1"
                     /translation="MLVMAIAVAVLGLFCVLLAVSCYQLSLKLRQQAELQKERDALRD
                     QRLKELAKRLDAYLTGSIRMGEELHELRRVVAPLPDKLNQMEQRDPSSLSFTQAARLV
                     GMGASVEDLTQSCGLSQAEAELVSRLHQSQKQRS"
     gene            complement(2805..3284)
                     /locus_tag="VLF16_06960"
     CDS             complement(2805..3284)
                     /locus_tag="VLF16_06960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HSX70657.1"
                     /translation="MKKSSAQGSEDPILQWVTFRLDNETYGINVMQVQEVLRYTEIAP
                     VPGAPAYVLGIINLRGNVVTVIDTRQRFGLPPAPVTDNTRIVIIEADKQVVGILVDSV
                     AEVVYLRQSEVETAPNVGNDESAKFIQGVCNKNGELLILVELDKMMSEEEWSELESI"
     gene            complement(3359..>3834)
                     /locus_tag="VLF16_06965"
     CDS             complement(3359..>3834)
                     /locus_tag="VLF16_06965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CheW domain-containing protein"
                     /protein_id="HSX70658.1"
                     /translation="RPDWADEPFECLLFDVAGLTLAVPLVCLGSIYPLAEAELTPLFG
                     QPDWFLGILPSQAGNLKVLDTARWVMPERYREDFREGLQYVISVEGYEWGLAVHQVSR
                     SIRLEPDEIKWRSQRSQRPWLAGTVIEHMCALLDVSALAEVIASGATRNGAIRAH"
BASE COUNT          682 a         1334 c         1244 g          574 t
ORIGIN      
        1 gtcctgccca gcccaatccc gccgatctcg ccgtcaagct gctgcagccg ctcgacggca
       61 cgctgatgcc gggcgaaacc gccaaggccg aagtgatagt cgccaaagag gcggcgcaga
      121 acttccagct gctgctcaag ctgaccctgg acaacggcaa gcaggccacc ctcgaggcga
      181 gcagcacgcg ccccttggcc cagggcacca cgctggccgt gaccgcactc tccgacaccc
      241 gcctggccgt ggcgctgcaa ggctcgagcg gcggcacgct cggcgccctg gatctcgaac
      301 aggtaccggc cggcacgctg ctgcaaggca aggtcgaggc gcgcgagcag atcgcccagg
      361 ccaagggcca gcaggcgctc taccgggtgg tggtgagcct gctcaacacg ccgctggccg
      421 gcagcaagct ggacgtcgaa acaccgcttc cgctggccct cggcagcctg gtgacggcgc
      481 aggtccaggg cagccagagc ctcagcttcc tgccgctcag cggtcgactc gatcaactgg
      541 tgctcggcca gcaactggcc gcgcaacagg cccgccaggg atcgctggaa ggattgttca
      601 agggcctgca gggcatggtc cagcagggcg acctgtcgcc cgacctgcgc gccaccatcg
      661 acaagctgct cggcctgctg ccggacggca agcagctcgg caccgccgac ggtctggcca
      721 aagcccttga acagagtggc gtgtttctcg aggccaagct gctcggcggc caggcccagc
      781 aactgccgca ggatctcaag gccagcctgc tgcgcctggt cgcccaactg ctgccgggcc
      841 tgcccggtgg cgcggcgatg ccagcgacca gcgccggcgg cgcgctggca caggccctgc
      901 ccgccttcgc ccgcaacgcc ctgggcgcgc tcggccaggc caacctgcgc cagcaggcca
      961 tgagttttcc gctgccctcg cggctattgc agtcgatgga cggcgagccc gacctggaga
     1021 tcctgctcaa gctggccgcg gccgccgtgt cgcgcctgca gacccaccag ctgtcgagcc
     1081 tggcgcagac ccagacgacg ccggaaggca acctgctgac cacctggcag ctggagctgc
     1141 cgatgcgcaa ccagcacgac gtggtgccgc tgcaggtcaa gctgcagcgc gaggagccgg
     1201 gtcccgacgg gcgcaaggaa cagaaggaag cgctgtggcg catcgacctg gctttcgacc
     1261 tcgacccgct gggtccgctg caggtccagg cgcagctgct gcgtggcgcc ctgtccagcc
     1321 agctgtgggc cgaacgcgcc gagacggtga agctgatcga ccaggagctg gacaacctgc
     1381 gtcagcgcct gctgagcgcc ggcctggagg ttggcgagct gagctgctgc cagggcatgc
     1441 cgccgcaggg gccgaagacg catctggagc agcgctgggt ggacgaaacc gcatgaagca
     1501 ggacaaggca ccacgccagg ccatcgccct ctcctacgac ggcagcaatg cccccagcct
     1561 cacggccaag ggcgacgacg agctggccga ggccatcctg gccatcgccc gcgaatacga
     1621 agtgccgatc tacgagaacg ccgaactggt gcgcctgctg gcgcgcatgg aactgggcga
     1681 cgcgattccc gaaccgctgt accgcagcat tgccgagatc atcgctttcg cctggcacct
     1741 caagggcaag cgcccggaag gcttcgccga agacccggcg gagcgcgacg tcactccacc
     1801 accgggttcg gctctcccgc cgctgttggc ggcgccccga gaatgaaggc gaacagctcg
     1861 ccctcctgtc ccttgccctg gggaaaatcc agcaactgcc aggcgaagta gccgccacgg
     1921 aagtagtaga tctgctggaa accccagtcc acggcgcggc gcgcggcctc ggcgctgtgc
     1981 gggcagaact cgctgtcgca atacagcacc agcggcatct cccgaggcca gtccgtgccc
     2041 tgcagctcgg cgaagcggcc atcgagttcc agatgcaacg cgccgtgaac gtgtccccag
     2101 ccccactgcc gggacgggcg cacatcgatg aatagcacgc cgtattcata cagctggcgc
     2161 gcctgcatga cgctgatggt ggtggccccg ctgacctgca gcggcgcctc actggcctgc
     2221 gccggcggca gcaccagcag caataggaat atcagccccg aacgcatggc ggacctcctc
     2281 tggaagtcac gtggccccat gtgttgagac taggcgggaa tgcagggcgg actaggaacc
     2341 attgacgccg caacggcggc ggataagaac cccaggacct aaggcggcgc tcaggagcgc
     2401 tgtttctgcg actggtgcag acggctaacc agctcagcct ccgcttggct gaggccgcag
     2461 gactgggtca ggtcttccac actggcgccc attcccacca ggcgcgcagc ctgggtgaag
     2521 gacaggctgg agggatcgcg ctgctccatc tggttcagct tgtccggcag aggcgccacc
     2581 acgcggcgca gctcgtgcag ctcctcgccc atgcggatgc tgccggtgag ataggcgtcc
     2641 aggcgcttgg ccagctcttt gaggcgctga tcgcggagcg cgtcgcgctc cttctgcagt
     2701 tccgcctgct ggcgcagctt caacgacagc tgatagcagg acacggccag cagcacgcag
     2761 aacagaccga gcacggccac cgcgatcgcc atcacgagca tggatcagat gctctccagc
     2821 tcggaccact cttcctcgct catcatcttg tccagctcga ccaggatgag cagttcgccg
     2881 ttcttgttgc acacgccctg gatgaacttg gcggactcgt cgttacccac gttgggtgcg
     2941 gtttccacct cggactgacg cagatagacc acctcggcca cgctgtcgac caggatgccg
     3001 accacctgct tgtccgcctc gatgatgacg atgcgggtgt tgtcggtgac cggcgccggc
     3061 ggcaggccga agcgctggcg ggtgtcgatc acggtcacca cgttgccgcg caggttgatg
     3121 atgccgagca cataggccgg cgcccccgga accggagcga tctcggtgta acgcaggact
     3181 tcctgcacct gcatcacgtt gatgccgtag gtctcgttgt ccaggcgaaa ggtcacccac
     3241 tgcagaatcg gatcttcgga accctgcgct gacgatttct tcatgtccct agcctcaagt
     3301 tcgcgggtcg gcccgcttgt cgttaactat agagccccgc acacgcgagg cgttgcattc
     3361 agtgcgcgcg gatcgctccg ttgcgcgtgg cgccgctggc gatcacctcg gccagggccg
     3421 agacgtcgag caacgcgcac atgtgttcga tcacggtacc ggccagccag gggcgctgcg
     3481 agcgctggct gcgccatttg atctcgtcgg gctccaggcg aatcgagcgg ctgacctgat
     3541 gcaccgccag cccccactcg taaccctcca cggagatcac gtactgcagc ccctcgcgga
     3601 aatcctcgcg gtagcgctcg ggcatcaccc agcgcgcagt atccagcact ttcaggttgc
     3661 ccgcctggct ggggagtatg ccgaggaacc agtcgggctg gccgaacagc ggtgtcagct
     3721 cggcctcggc cagcgggtag atggagccca ggcataccag cggcaccgcc agggtaagac
     3781 cggcgacatc gaacagcagg cattcgaagg gttcgtcggc ccaatccggt cggc
//
LOCUS       DATIHC010000432         2831 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12788, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000432 DATIHC010000000
VERSION     DATIHC010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2831)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2831)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2831
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12788"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..241)
                     /locus_tag="VLF16_06970"
     CDS             complement(<1..241)
                     /locus_tag="VLF16_06970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001548934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70659.1"
                     /translation="MELATFKAPRNSRVIRSATPIELHRLREVVPSAFAEDKHESRSD
                     RYTYIPTSEVILAMLREGFAPFAAVQCRSRIEGKTA"
     gene            complement(277..549)
                     /locus_tag="VLF16_06975"
     CDS             complement(277..549)
                     /locus_tag="VLF16_06975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70660.1"
                     /translation="MTYQLELNAEAARLEKLSAEILGKVTQFDGDMALHGMPGYSQLA
                     RSLQQAVKTIDILLAAYDKGANPEHFAAIARLDLRDIELRVGDITR"
     gene            complement(620..871)
                     /locus_tag="VLF16_06980"
     CDS             complement(620..871)
                     /locus_tag="VLF16_06980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70661.1"
                     /translation="MFHVPAHKQQDQSKAPAQVPVIPQQQEKSVDAIVQVLRDFGHNA
                     RHSSFYPDSAFVMLFGNPYYINTMENALAFIDFYPSPTH"
     gene            complement(948..1112)
                     /locus_tag="VLF16_06985"
     CDS             complement(948..1112)
                     /locus_tag="VLF16_06985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70662.1"
                     /translation="MSGVIKSKCPHCLRSVELKQGKLVVHMNASGKVCTPKAGPVQAS
                     GNYSGYKKGS"
     gene            complement(1124..1297)
                     /locus_tag="VLF16_06990"
     CDS             complement(1124..1297)
                     /locus_tag="VLF16_06990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70663.1"
                     /translation="MKKDTIKCGWCGAMVELTKNRMRPRQHLNCGKTCVGSGQLVEQH
                     NFVARLKFNQMVK"
     gene            complement(1294..1506)
                     /locus_tag="VLF16_06995"
     CDS             complement(1294..1506)
                     /locus_tag="VLF16_06995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70664.1"
                     /translation="MGHKSWGGARPNKWDIYQHEEPQGERFYVQLDVDLHYVVIDGES
                     NKVVFSDEDKLTCECEAEHLNSLEQA"
     gene            complement(1540..1710)
                     /locus_tag="VLF16_07000"
     CDS             complement(1540..1710)
                     /locus_tag="VLF16_07000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70665.1"
                     /translation="MSDLATKCIAFEDGTMTTDEIQEFFQFLIDNGVIGQLQGFYQRY
                     AYELVAHGVCHE"
     gene            complement(1721..1864)
                     /locus_tag="VLF16_07005"
     CDS             complement(1721..1864)
                     /locus_tag="VLF16_07005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70666.1"
                     /translation="MNWLTDDLDAGQFQRLLQWLRAGRMTPTANNIKAWRRHAGLPVS
                     KDD"
     gene            complement(2106..2366)
                     /locus_tag="VLF16_07010"
     CDS             complement(2106..2366)
                     /locus_tag="VLF16_07010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70667.1"
                     /translation="MINQLYDCMDCYDGELDADCFELLGEYGSFDWAVAFAQQFDMNV
                     HGQVCVWSKQGSFLGYVYRGKFFGEVLVDGGYYDNPFDYCEF"
     gene            complement(2385..2540)
                     /locus_tag="VLF16_07015"
     CDS             complement(2385..2540)
                     /locus_tag="VLF16_07015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70668.1"
                     /translation="MNDITDYTISDEDAYIALQVLIEEGEEVAWELHCRRLPEPALNI
                     DFDDLPF"
BASE COUNT          545 a          817 c          816 g          653 t
ORIGIN      
        1 aggcagtctt gccttcgatg cgagaacggc actgcaccgc agcgaacggc gcgaagcctt
       61 cacgcagcat cgccaggatc acttcggacg tggggatgta ggtgtaccga tccgagcggg
      121 actcgtgctt gtcctcagcg aacgcggacg gcaccacctc gcgcagccgg tgcagttcga
      181 tgggcgtggc gctgcggatc acgcgagagt tgcggggagc cttgaaggtt gcgagttcca
      241 tgatgtgtcc ttgtgaagtg gtaaacggtt tacgggtcag cgggtgatgt cgcccacgcg
      301 cagttcgatg tcgcgcaagt caagccgggc gatagcggcg aagtgttccg ggttcgcgcc
      361 cttgtcgtag gcagcaagca agatgtcgat ggtcttgacc gcttgctgca ggctacgcgc
      421 cagttgcgag tagccgggca tgccatgcag cgccatgtcg ccgtcgaact gcgtgacctt
      481 gccgagtatt tcagcactca gcttttcgag cctcgcagct tcagcgttga gttccagttg
      541 ataagtcatc gtgtctgctc ctgtgttcgt gactgacgcc acgctactgc cgccgtgcta
      601 gagcggcagg cgcttggggt cagtgagtcg ggctgggata gaagtcgatg aaggccagcg
      661 cgttctccat ggtgttgatg tagtacggat tgccaaacag catcacgaag gccgagtcgg
      721 ggtagaagct ggagtggcga gcgttatgtc cgaagtcgcg caggacttga acgatggcat
      781 cgacgctctt ttcctgctgc tgcgggatca ccggcacttg cgccggggcc ttggactggt
      841 cttgctgctt gtgggcggga acgtgaaaca tcgtgaactc ctgttggttg ccggtgtggg
      901 tcttacttgc tgcccacacc tttaatgtaa acgagaatct gagaacttca agaacctttt
      961 ttgtaaccgg aatagttacc ggacgcctgg accgggcctg ccttcggcgt gcagaccttg
     1021 ccgctggcgt tcatgtgaac gaccagcttg ccctgcttca gttccacgct gcgcaggcag
     1081 tgcgggcact tggacttgat gactccgctc atgctttctc cagttactta accatctgat
     1141 tgaacttcag ccgggcaacg aagttgtgct gctccaccag ttgcccgctg cctacgcagg
     1201 ttttcccgca gttcaagtgc tgccgtgggc gcatgcggtt cttcgtgagt tccaccattg
     1261 cgccacacca cccgcacttg atggtgtctt tcttcatgct tgctccaggc tgttaaggtg
     1321 ttcggcttcg cactcgcagg tcaacttgtc ctcatccgag aacacgacct tgttgctctc
     1381 gccgtcgatg acgacatagt gaaggtcaac gtcaagctga acgtagaagc gttcgccctg
     1441 cggctcctca tgctggtaga tgtcccactt attagggcgc gcaccgcccc agcttttgtg
     1501 tcccatgtcg tgctcctttc gtgtttacga gaatccagtt tactcgtgac aaacgccgtg
     1561 cgcaaccagt tcgtaggcat agcgttgata aaagccctga agctgcccga tgactccgtt
     1621 gtcgatgagg aactggaaga actcctgaat ctcatccgta gtcatcgtgc cgtcctcgaa
     1681 ggcaatgcac ttggttgcca agtcactcat gttcatgtcc tcagtcgtcc ttgctgacag
     1741 gcaggccagc atgtcggcgc catgccttga tgttattggc tgtcggcgtc atgcggccag
     1801 cacgaagcca ctgcagtagt cgctggaact gaccggcatc aagatcgtcg gtcagccagt
     1861 tcactctcgg gtccatgtcc tcactcgctt ttctctttga caagttccac ttccggggtg
     1921 cgctggcaag tcttgagcag atcgacgcca taagcgtgaa cccatgacgg ctgacctggg
     1981 cgtggcagaa gttccactgg cgcaccacac cgtttgcaca cataaacgta ttcagtcata
     2041 cagcctcctt ctcgtggctg atgccacgct catgcgccca tggtggcggg cgcaggcgcg
     2101 tgggatcaga actcgcagta atcgaacggg ttgtcgtagt agccgccgtc caccagaacc
     2161 tctccaaaga acttgccgcg atacacgtat ccaaggaacg aaccctgctt agaccacacg
     2221 cacacctgac catggacgtt catatcgaac tgctgcgcga acgccaccgc ccaatcgaaa
     2281 gaaccgtact cgcccagcaa ctcgaagcag tcggcatcca gttcgccgtc atagcagtcc
     2341 atgcagtcgt acagttgatt tatcaccaaa aacatgattg ctcctcagaa cggcagatcg
     2401 tcaaagtcga tgttcagcgc aggttccggc aggcgccggc agtgcagttc ccaggcgacc
     2461 tcctcgccct cctcaatgag aacctgcaga gcgatgtatg cgtcctcgtc gctgatggtg
     2521 tagtcggtga tgtcgttcat gtcactctcc tgtgtcggta agaggattat tgtttacgac
     2581 aagccaaagt tcaagcatct tttttgtaac cgcaaaagaa aaagccgccc gaaggcggca
     2641 aagaccgggg gtgcgtgtcc cgatcagcct tgcgagggcg gcagcggcat gtccccgctg
     2701 tccttgacgt acttcgtgca gcgtgcgtgc cagtagtcca cttcggactg cagccgggcg
     2761 acttccgttt cagcctgggt gcagcgttgg ctcgtgtcca gcagttgccg ggtcacggcc
     2821 ttgttgtgct g
//
LOCUS       DATIHC010000433         2001 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29190, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000433 DATIHC010000000
VERSION     DATIHC010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2001
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29190"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2001
                     /gene="purL"
                     /locus_tag="VLF16_07020"
                     /gene_synonym="purI"
     CDS             <1..>2001
                     /gene="purL"
                     /locus_tag="VLF16_07020"
                     /gene_synonym="purI"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HSX70669.1"
                     /translation="RAYDKPIMLAGGLGNIREDHVQKGEISVGAKLIVLGGPAMLIGL
                     GGGAASSMATGASSADLDFASVQRDNPEMERRCQEVIDRCWQLGTDNPIKFIHDVGAG
                     GISNALPELINDGGRGGRFELRAVPNDEPGMAPLEIWCNESQERYVMSVDAADFERFK
                     AICERERCPFAVVGEAIAEPHLTVSDSHFGNKPVDMPLEVLLGKPPRMHRSVAREAEQ
                     GDDFDAAGIDIEEAVNRVLRHPAVASKSFLITIGDRTITGLVARDQMVGPWQVPVADC
                     AVTATSFDVYTGEAMAMGERTPLALLDAPASGRMAVGETITNLAAARIDKLSDIKLSA
                     NWMAAAGHPGEDARLYDTVKAVGMELCPALGITIPVGKDSMSMKTRWQDEGVDKSVTS
                     PLSLVISGFAPVLDVRQSLTPQLRLDKGETDLILIDLGRGQNRLGGSILAQTHAQLGQ
                     TVPDLDDAEDLKAFFAVIQGLNADGHLLAYHDRSDGGLLTTVLEMAFAGHCGLNLFLD
                     ALADDASELPAVLFSEELGAVIQVRQGATPEVLAQFSAAGLDDCVAVIGQPINGSEVA
                     ISFNGEPVFGGQRRLLQRMWAETSYQIQRLRDNAEGADQEFDLILDEENPGLSTKLSF
                     DVNQDIAAPYIKKGARPQVAILREQGVNGQVEMAAAFDRAGFS"
BASE COUNT          330 a          710 c          673 g          288 t
ORIGIN      
        1 cgcgcctacg acaagccgat catgctcgcc ggcggtctcg gcaacatccg tgaagaccac
       61 gtacagaagg gcgagatctc ggtcggcgcc aagctgatcg tgctcggcgg cccggccatg
      121 ctcatcggcc tgggcggcgg cgcggcatcg tccatggcca ctggcgccag ctccgccgac
      181 ctggacttcg cctcggtgca gcgcgacaac ccggaaatgg agcgtcgctg ccaggaggtc
      241 atcgaccgct gctggcagct gggcaccgac aacccgatca agttcatcca cgacgtcggc
      301 gcgggcggca tctccaacgc cctgccggag ctgatcaacg acggcggccg cggcggtcgc
      361 ttcgagctgc gcgccgtgcc caacgacgag ccgggcatgg ccccgctgga aatctggtgc
      421 aacgagtcgc aggaacgcta cgtgatgagc gtggacgccg ccgacttcga gcgcttcaag
      481 gccatctgcg agcgcgagcg ctgcccgttc gccgtggtcg gcgaggccat cgccgaaccg
      541 cacctgaccg tgtccgacag ccacttcggc aacaagccgg tggacatgcc gctggaagtg
      601 ctgctcggca agccgccgcg catgcaccgc agcgtggccc gcgaggccga gcagggcgat
      661 gacttcgacg ccgccggcat cgatatcgaa gaggcggtga accgcgtgct gcgtcacccg
      721 gccgtggcca gcaagagctt tctgatcacc atcggcgacc gcaccatcac cggcctggtc
      781 gcccgcgacc agatggtcgg cccgtggcag gtgccggtgg ccgactgcgc tgtgaccgcc
      841 accagcttcg acgtctacac cggcgaggcc atggccatgg gcgagcgcac cccgctggcc
      901 ctgctcgacg cgccggcctc cggtcgcatg gcggtgggcg agaccatcac caacctggcc
      961 gccgcgcgca tcgacaagct ctccgacatc aagctgtccg ccaactggat ggccgccgcc
     1021 ggccacccgg gtgaggacgc gcgcctgtac gacaccgtca aggccgtggg catggagctg
     1081 tgcccggcgc tgggcatcac cattccggtg ggcaaggact ccatgtccat gaagacccgc
     1141 tggcaggacg agggcgtcga caagagcgtg acctcgccgc tgtcgctggt gatctccggc
     1201 ttcgctccgg tgttggatgt gcgccagtcg ctgacccccc agctgcgtct ggacaagggc
     1261 gagaccgacc tgatcctgat cgacctgggc cgcgggcaga accgcctggg cggctcgatc
     1321 ctggcgcaga cccatgccca gctcggccag accgtgccgg acctggacga tgccgaggac
     1381 ctcaaggcct tcttcgcggt gatccagggc ctcaacgccg acggccacct gctggcctac
     1441 cacgaccgct ccgacggcgg cctgctgacc accgtgctgg aaatggcctt cgccggccac
     1501 tgcggcctca acctgttcct cgatgccctg gccgacgacg cctccgagct gccggccgtg
     1561 ctgttcagcg aggaactggg cgcggtgatc caggtgcgcc agggcgccac gccggaagtg
     1621 ctggcccagt tcagcgccgc cggtctggat gattgcgtgg cggtgatcgg tcagccgatc
     1681 aacggcagcg aggtggccat cagcttcaac ggcgagccgg tgttcggcgg ccagcgccgt
     1741 ctgctgcagc gtatgtgggc ggagaccagc taccagatcc agcgcctgcg cgacaacgcc
     1801 gagggcgccg accaggagtt cgatctgatc ctcgacgagg agaacccggg cctgtcgacc
     1861 aagctcagct tcgacgtcaa ccaggacatc gccgcaccat acatcaagaa gggcgcgcgt
     1921 ccgcaggtgg cgatcctgcg cgagcagggc gtcaacggtc aggtcgagat ggccgcggcc
     1981 ttcgaccgcg ccggcttctc g
//
LOCUS       DATIHC010000434         1533 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10543, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000434 DATIHC010000000
VERSION     DATIHC010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1533
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10543"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            146..838
                     /gene="ung"
                     /locus_tag="VLF16_07025"
     CDS             146..838
                     /gene="ung"
                     /locus_tag="VLF16_07025"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011059775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HSX70670.1"
                     /translation="MSEDDRIKLEPGWKEALRDEFEKPYMKALGEFLRNEKAAGKVIY
                     PPGPMIFNALNSTPLDQVKVVIIGQDPYHGPGQAHGLCFSVQPGVPAPPSLVNIFKEL
                     KRDLNIDIPDHGYLQSWAEQGVLLLNTSLTVQQASAGSHADKGWQPFTDKVIEVVNAR
                     PGNLVFLLWGAHAQSKQKLIDATRHLVLKSAHPSPLSAYRGFLGNGHFSRANQYLKQC
                     GLTPIDWRLPPL"
     gene            complement(804..>1533)
                     /locus_tag="VLF16_07030"
     CDS             complement(804..>1533)
                     /locus_tag="VLF16_07030"
                     /inference="COORDINATES: protein motif:HMM:NF039714.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF6279 family lipoprotein"
                     /protein_id="HSX70671.1"
                     /translation="EPRLDQHLAWHCSTQLPQLANWLDQDRADLAAGGLDAAHFEARF
                     ADLRMALGEVSSEIGPTAAGLLQQLTPLQVQQLREQMAEENEKLRREFVEPPLAEQIA
                     KRAETTEERLQPWFGDLDEQQQALVRAWAERRGEQNRLWLDSRERWQAALLQELEGRR
                     SADFPQRIERLLRERQSYWSEAYRESFEDGERSLAVLLGQLIASADAAQRQRLQESLG
                     ALREDIAELACDGATAEAVASRSE"
BASE COUNT          238 a          528 c          512 g          255 t
ORIGIN      
        1 tcgcggggtg gggagcttgc agtcttggct cgctttgccg cgccggccaa atgcatccac
       61 gggcgtgatg ggccggcatc agccttgact tgccccggag ccttccctag cgtgccgtgt
      121 ttcgttggac ggcaggacac agcgcatgag cgaagacgat cgcatcaaac tcgaaccggg
      181 ctggaaagag gccctgcgcg acgagttcga aaagccctac atgaaggcgc tcggcgagtt
      241 cctgcgcaac gagaaggcgg ccggcaaggt gatctacccg ccgggcccga tgatcttcaa
      301 cgcgctgaat tccacgccgc tggaccaggt caaggtggtg atcatcggcc aggaccccta
      361 ccacggcccc ggccaggcgc acggcctgtg cttctcggtg caaccgggcg tgccggcgcc
      421 gccctcgctg gtaaacatct tcaaggaatt gaagcgcgac ctgaacatcg acatccccga
      481 ccacggctac ctgcagagtt gggcggagca gggcgtactg ctgctcaaca cctcgctgac
      541 cgtgcagcag gccagcgccg gctcccatgc cgacaagggc tggcagccat tcaccgacaa
      601 ggtgatcgaa gtggtcaacg cgcggccggg caacctggtg ttcctgctgt ggggcgcgca
      661 cgcgcagagc aagcagaagc tgatcgacgc cacccgccat ctggtgctga agtcggcgca
      721 tccgtcgccg ctgtcggcct accgcggctt cctcggcaac ggccatttca gtcgcgccaa
      781 ccagtacctt aagcagtgcg gcctcactcc gatcgactgg cgactgcctc cgctgtagcg
      841 ccgtcgcaag ccagctcggc gatgtcctcg cgcagggcgc cgaggctctc ctgcagacgc
      901 tgacgctgcg cggcgtcggc gctggcgatc agctggccga gcagcaccgc caggctgcgc
      961 tcgccatcct cgaaggactc ccgataggcc tcgctccagt agctctgccg ctcgcgcagc
     1021 aggcgttcga tgcgttgcgg gaagtcggcg ctgcggcggc cttccagctc ctgcagcagc
     1081 gccgcttgcc agcgctcgcg gctgtccagc cacaggcggt tctgctcgcc gcggcgctcg
     1141 gcccaggccc gcaccagcgc ctgttgctgc tcatcgagat cgccgaacca gggctgcagg
     1201 cgttcctcgg tggtttccgc gcgtttggcg atctgctcgg cgagcggggg ttcgacgaac
     1261 tcgcggcgca gcttttcgtt ttcctcagcc atctgttcgc gcaattgctg cacctgcagc
     1321 ggggtgagct gttgcagcag gccggcggcg gtcgggccga tctcgctgga gacctcgccc
     1381 agggccatgc gcaggtcggc gaagcgtgcc tcgaagtgcg ccgcgtccag gccgccggcg
     1441 gccagatcgg cgcggtcctg gtccagccag ttggccagct gcggcagctg ggtgctgcag
     1501 tgccacgcca ggtgctgatc gagacgcggc tcg
//
LOCUS       DATIHC010000435         2856 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43215, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000435 DATIHC010000000
VERSION     DATIHC010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2856)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2856)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2856
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43215"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..331
                     /locus_tag="VLF16_07035"
     CDS             <1..331
                     /locus_tag="VLF16_07035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003109551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="efflux transporter periplasmic adaptor subunit"
                     /protein_id="HSX70672.1"
                     /translation="IKDEAVGTDLGKKFVLVLDKDNAVQYRAIELGPKLEGLRIVRQG
                     LSKGEKIVVNGLQRAMPGATVDPQAVPMADEATLAQLARLRQAVDGRDAPRVAEQQAK
                     SSNAPRG"
     gene            343..>2856
                     /locus_tag="VLF16_07040"
     CDS             343..>2856
                     /locus_tag="VLF16_07040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSX70673.1"
                     /translation="MNFSQFFIKRPIFAAVLSLLVLIAGAISLFQLPISEYPEVVPPT
                     VVVRANFPGANPKVIGETVASPLEQAITGVEGMLYMSSQSTADGKLTLTITFALGTDL
                     DNAQVQVQNRVTRTMPTLPTEVQRLGVTVDKASPDLTMVVHLTSPDQRYDMLYLSNYA
                     ALNVKDELARLDGVGDVQLFGMGNYSLRVWLDPNKVASRNLTASDVVAAIREQNRQVA
                     AGALGAPPSDAGNSFQLSINTQGRLVSEEEFENIIIRAGDDGEITRLKDIARIELGSS
                     QYALRSLLNNQPAVAIPVFQRPGSNAIEISDSVRARMAELKQSFPQGVDYEIVYDPTI
                     FVRGSIEAVVHTLLEAIVLVVLVVVLFLQTWRASIIPLAAVPVSLIGTFAVMHLFGFS
                     LNALSLFGLVLAIGIVVDDAIVVVENVERNIGLGKSPVEATRQAMKEVTGPIVATALV
                     LCAVFVPTAFISGLTGQFYQQFALTIAISTVISAFNSLTLSPALAAVLLKDHHAPKDR
                     FSKVLDKLFGGWLFNPFNRFFDRASHGYVGTVKRVLRGSSTALLVYGGLLVLGYLGFS
                     STPTGFVPQQDKQYLVAFAQLPDAATLDRTEDVIKRMSEIAGKHPGVENTVAFPGLSI
                     NGFTNSPNSGIVFTPLKPFDERTDPSLSASAIAAELNAQFAEIQDAYIAIFPPPPVQG
                     LGTIGGFRLQIQDRGSLGYEELYAQTQNILAKARQLPELNPMSVFTSYQVNVPQIDAN
                     IDREKAKTHGVAISDIFDTMQVYLGSLYANDFNRFGRTYQVNVQADQQFRLEPEQIGQ
                     LKVRNNRGEMIPLSTFVKVDNSAGPDRVMHYNGFLTAEIN"
BASE COUNT          505 a         1028 c          849 g          474 t
ORIGIN      
        1 gatcaaggac gaagcggtcg gtaccgacct aggcaagaag ttcgtcctgg tcctcgacaa
       61 ggacaacgcc gtgcagtacc gcgccatcga gctcggcccg aagctggaag gcctgcgcat
      121 cgtccgccag ggcctttcca agggcgagaa gatcgtggtc aacggcctgc agcgcgccat
      181 gcccggcgcc accgtcgatc cgcaggccgt gccgatggcc gacgaagcca ccctcgccca
      241 gctggcgcgc ctgcgccagg ccgtggatgg ccgcgacgcc ccgcgcgtag ccgagcagca
      301 agccaagtcc agcaacgcgc cgcgcggctg aggtagaacc ccatgaactt ctcccagttc
      361 ttcatcaagc ggccgatctt cgccgccgtg ctgtccctgc tggtactgat cgccggtgcg
      421 atctcgctgt tccagctgcc gatcagcgaa tacccggaag tggtgccacc caccgtggtg
      481 gtgcgcgcca acttccccgg cgccaacccc aaggtgatcg gcgagaccgt cgcctcgccg
      541 ctggaacagg ccatcaccgg cgtggaaggc atgctctaca tgtcgtcgca gtccactgcc
      601 gacggcaagc tgaccctgac catcaccttc gccctcggca ccgacctgga caacgcccag
      661 gtgcaggtgc agaaccgcgt gacccgcacc atgccgaccc tgcccaccga ggtgcagcgc
      721 ctcggcgtga ccgtggacaa ggcctccccc gacctgacca tggtggtgca cctgacctcg
      781 ccggatcagc gctacgacat gctctacctg tccaactacg ccgcgctcaa cgtcaaggac
      841 gagctggcgc gtctggacgg cgtgggtgac gtgcagctgt tcggcatggg caactactct
      901 ctgcgcgtgt ggctcgaccc gaacaaggtg gcctcgcgca acctcaccgc ctcagacgtg
      961 gtcgccgcga tccgcgagca gaaccgccag gtcgccgccg gcgccctcgg cgcgccgccc
     1021 tcggacgccg gcaacagctt ccagctgtcg atcaacaccc agggccgcct ggtcagcgag
     1081 gaagagttcg agaacatcat catccgcgcc ggcgacgacg gtgagatcac ccgcctcaag
     1141 gacatcgccc ggatcgaact gggttccagc cagtacgccc tgcgctcgct gctgaacaac
     1201 cagccggccg tggccatccc ggtattccag cgccccggct cgaatgccat cgagatctcc
     1261 gactcggtgc gtgcgcgcat ggccgaattg aagcagagct tcccgcaggg cgtggactac
     1321 gagatcgtct acgacccgac cattttcgtg cgcggttcca tcgaggcagt ggtgcatacc
     1381 ctgctcgaag ccatcgtgct ggtggtgctg gtggtggtgc tgttcctgca gacctggcgc
     1441 gcctcgatca tcccgctggc cgccgtgccg gtgtcgctga tcggtacctt cgccgtgatg
     1501 cacctgttcg gcttttcgct caacgccctg tcgctgttcg gcctggtgct ggccatcggc
     1561 atcgtggtgg acgacgccat cgtggtggtg gagaacgtcg agaggaacat cggtctcggc
     1621 aagtcgccgg tggaagccac ccgacaggcc atgaaggaag tgaccggccc gatcgtcgcc
     1681 actgcactcg tgctgtgcgc cgtatttgtg ccgaccgcat tcatctccgg cctcaccgga
     1741 cagttctacc agcagttcgc cctgaccatc gccatctcca cggtgatctc ggcgttcaac
     1801 tcgctgaccc tgtcgccggc cctggccgcc gtgctgctga aggatcacca cgcgccgaag
     1861 gaccgcttct ccaaggtgct ggacaagctg ttcggcggtt ggctgttcaa cccgttcaac
     1921 cgcttcttcg accgcgccag ccatggctac gtcggcaccg tgaagcgcgt gctacgcggc
     1981 agctccaccg ccctgttggt ctacggcggg ttgctggtgc tcggttacct gggcttctcc
     2041 agcacgccga ccggcttcgt gccgcagcag gacaagcagt acctggtcgc cttcgcccag
     2101 ctgccggacg ccgccaccct cgaccgcacc gaggacgtga tcaagcgcat gtcggaaatc
     2161 gccggcaagc atccgggcgt ggagaacacc gtggccttcc cgggcctgtc gatcaacggc
     2221 ttcaccaaca gcccgaacag cggcatcgtg ttcaccccgc tcaagccgtt cgacgagcgc
     2281 accgacccga gcctctcggc cagtgccatc gccgccgaac tgaacgccca gttcgccgag
     2341 atccaggacg cctacatcgc catcttcccg ccgccacccg tgcagggtct cggcaccatt
     2401 ggtggcttcc gtctgcagat ccaggaccgc ggcagcctcg gctacgagga gctgtatgcc
     2461 cagacccaga acatcctggc caaggcgcgc cagctccccg agctgaaccc gatgtcggtg
     2521 ttcaccagct accaggtcaa cgtgccgcag atcgatgcca atatcgaccg cgagaaggcc
     2581 aagacccacg gcgtggccat cagcgacatc ttcgacacca tgcaggtgta cctgggctcg
     2641 ctgtacgcca acgacttcaa ccgtttcggc cgcacctacc aggtcaacgt ccaggccgac
     2701 cagcagttcc gcctggagcc cgagcagatc ggccagctca aggtgcgcaa caaccgtggc
     2761 gagatgatcc cgctgtcgac cttcgtcaag gtggataaca gcgcaggtcc cgaccgggtg
     2821 atgcactaca acggcttcct caccgccgag atcaac
//
LOCUS       DATIHC010000436         1778 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_6025, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000436 DATIHC010000000
VERSION     DATIHC010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1778
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6025"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..416
                     /locus_tag="VLF16_07045"
     CDS             <1..416
                     /locus_tag="VLF16_07045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_061405587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="peptide chain release factor-like protein"
                     /protein_id="HSX70674.1"
                     /translation="RVEIEINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHVPTNTVV
                     ACQNERSQHANKDTAMKMLRAKLYELEMQKRTAASQALEDSKSDIGWGHQIRSYVLDD
                     SRIKDLRTGVERSDCQKVLDGDLDQYLEASLKQGL"
     gene            511..>1778
                     /gene="lysS"
                     /locus_tag="VLF16_07050"
     CDS             511..>1778
                     /gene="lysS"
                     /locus_tag="VLF16_07050"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011532564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HSX70675.1"
                     /translation="MSDQQPDQHDLQQEENKLIAQRKEKLAAVREQGNAFPNDFRRDS
                     LCADLQKQYAEKTKEELEAAAIPVKVAGRIMLNRGAFMVLQDTSGRLQVYVNRKTLPA
                     EQLEAVKHFDLGDIIAAEGTLARSGKGDLYVDMLNVRLLTKSLRPLPDKHHGLTDTEQ
                     RYRQRYVDLIVNEEVRDTFRVRSQVIAHIRRFLYERGFLEVETPMLQTIPGGAAAKPF
                     ETHHNALDMAMFLRIAPELYLKRLVVGGFEKVFEINRNFRNEGVSTRHNPEFTMLEFY
                     QAYADYEDNMDLTEELFRELAQTILGTTDVPYGDKVFHFGEPFVRLSVFDSILKYNPD
                     ITAADLNDVEKARTIAKKAGAKVLGHEGLGKLQVMIFEELVEHKLEQPHFITRYPFEV
                     SPLARRSDDDPSVTDRFELFIGGREIANAYS"
BASE COUNT          365 a          631 c          513 g          269 t
ORIGIN      
        1 accgggtcga gatcgagatc aacccgtccg acctgcgcat cgacacctac cgctcctccg
       61 gcgccggcgg tcagcacgtc aacaccaccg actcggcggt gcggatcacc cacgtgccga
      121 ccaacaccgt ggtggcctgc cagaacgagc gctcgcagca tgccaacaag gacaccgcca
      181 tgaagatgct gcgggccaag ttgtacgagc tggagatgca gaagcgcacc gcggcctccc
      241 aggcgctgga agacagcaag tcggatatcg gctggggcca ccagatccgt tcctacgtgc
      301 tcgatgattc gcgcatcaag gacctgcgga ccggcgtcga gcgcagcgac tgccagaagg
      361 tcctcgacgg cgacctcgac cagtacctcg aagccagcct caaacagggc ctttgatccc
      421 gtaccccctg tggggcacgg ctgctcgcca gtcgcgtgcc cctcggttcc cccattgatt
      481 agtgattaga cgccaggcag acagacgacc atgagcgacc aacagcccga ccagcacgac
      541 ctgcaacagg aagaaaacaa gctgattgcc cagcgcaagg aaaagcttgc cgccgtccgc
      601 gagcagggca atgccttccc caacgacttc cgccgcgaca gcctgtgcgc cgacctgcag
      661 aagcagtacg cggagaagac caaggaagag ctggaagccg ctgccatccc ggtcaaagtc
      721 gccggccgca tcatgctcaa ccgtggtgcc ttcatggtgc tgcaggacac ctccggccgc
      781 ctgcaggtct acgtcaaccg caagaccctg ccggccgagc agctggaagc ggtcaagcac
      841 ttcgacctgg gcgacatcat cgccgccgag ggcaccctgg cccgctccgg caagggcgac
      901 ctgtacgtcg acatgctcaa cgtgcgcctg ctgaccaagt cgttgcgtcc gttgcccgac
      961 aagcaccacg gcctgaccga caccgagcag cgctaccgcc agcgctacgt cgacctgatc
     1021 gtcaacgagg aggtgcgcga caccttccgc gtgcgctccc aggtcatcgc gcacatccgt
     1081 cgtttcctct acgagcgcgg cttcctcgaa gtggaaaccc cgatgctgca gaccatcccc
     1141 ggtggcgccg cggccaagcc cttcgagacc caccacaacg ccctggacat ggccatgttc
     1201 ctgcgtatcg cgccggagct gtacctcaag cgcctggtgg tcggtggctt cgagaaggtc
     1261 ttcgagatca accgcaactt ccgtaacgaa ggcgtttcga cccggcacaa ccccgagttc
     1321 accatgctcg agttctacca ggcctacgcc gactacgaag acaacatgga cctgaccgag
     1381 gagctgttcc gcgagctggc gcagaccatc ctcggcacca ccgacgtgcc ctacggcgac
     1441 aaggtgttcc acttcggcga gccgttcgtg cgcctgtcgg tgttcgactc gatcctcaag
     1501 tacaacccgg acatcaccgc ggccgacctc aacgacgtgg agaaggcccg caccatcgcc
     1561 aagaaggccg gcgccaaggt cctcggccac gagggcctgg gcaagctgca ggtgatgatt
     1621 ttcgaggaac tggtcgagca caagctggag cagccgcact tcatcacccg ttacccgttc
     1681 gaggtctcgc cgctggcccg tcgcagcgac gacgatccga gcgtcaccga tcgcttcgag
     1741 ctgttcatcg gcggccgcga gatcgccaac gcctactc
//
LOCUS       DATIHC010000437         1961 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8224, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000437 DATIHC010000000
VERSION     DATIHC010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1961)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1961)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1961
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8224"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            103..531
                     /gene="rplM"
                     /locus_tag="VLF16_07055"
     CDS             103..531
                     /gene="rplM"
                     /locus_tag="VLF16_07055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HSX70676.1"
                     /translation="MKTFTAKPETVKRDWYVVDAAGQTLGRLATEIASRLRGKHKPEY
                     TPHVDTGDYIVVINAEQVRVTGAKTSDKMYYSHSGFPGGIKEISFEKLIAKAPERVIE
                     TAVKGMLPKNPLGRDMYRKLKVYKGANHPHAAQQPQELKI"
     gene            546..938
                     /gene="rpsI"
                     /locus_tag="VLF16_07060"
     CDS             546..938
                     /gene="rpsI"
                     /locus_tag="VLF16_07060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000829824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HSX70677.1"
                     /translation="MSATQNYGTGRRKTATARVFLRPGTGKISINNRSLDNFFGRETA
                     RMVVRQPLELTETTEKFDIYVTVLGGGVSGQAGAIRHGITRALIEYDESLRSPLRKAG
                     YVTRDAREVERKKVGLRKARKRPQYSKR"
     gene            1190..1783
                     /gene="petA"
                     /locus_tag="VLF16_07065"
     CDS             1190..1783
                     /gene="petA"
                     /locus_tag="VLF16_07065"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045275 - respiratory chain complex III
                     [Evidence IEA];
                     GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HSX70678.1"
                     /translation="MSNDGVNAGRRRFLVAATSVVGAAGAVGAATPFVGSWFPSAKAK
                     AAGAPVKVNIAKVEPGQQMIAEWRGQPVFIVRRTEEILANLTKIEGSVADPESAASVQ
                     PEYVDKKTRAIKPEILVLVGLCTHLGCSPSFRPEVAPADLGPEWVGGYFCPCHGSRYD
                     MAGRVYKAQPAPLNLPVPPHSYESDDVIIVGVDQEKA"
     gene            1783..>1961
                     /locus_tag="VLF16_07070"
     CDS             1783..>1961
                     /locus_tag="VLF16_07070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HSX70679.1"
                     /translation="MEKFMAWIDARFPATQMWEDHLSKYYAPKNFNFFYFFGSLALLV
                     LVNQILTGIWLTMSFT"
BASE COUNT          399 a          604 c          573 g          385 t
ORIGIN      
        1 cccgacagcg tctgtttccg gctgccttga ccttgtcaaa gcgagcacca ttcagtaaga
       61 tccgccgtct tattttcagg gcggcccctg aggctatagc gaatgaagac ttttactgca
      121 aaaccggaaa ccgttaagcg cgactggtac gtcgtcgacg ctgccggcca gaccctgggt
      181 cgtctggcta ccgaaatcgc cagccgtctg cgcggcaagc acaagccgga atacaccccg
      241 cacgttgaca ccggcgacta catcgtcgtg atcaacgccg agcaggtgcg tgtcaccggc
      301 gccaagacca gcgacaagat gtactactcg cactccggct tcccgggtgg catcaaggaa
      361 atcagcttcg agaagctgat cgccaaggcc cccgagcgcg tgatcgagac cgcggtcaag
      421 ggcatgctgc cgaagaaccc gctgggtcgc gacatgtatc gcaagctgaa ggtgtacaag
      481 ggtgccaacc acccgcacgc cgctcagcag ccccaagaac tgaagattta acggaatagt
      541 tcactatgtc ggcgactcaa aactacggca ctggccgtcg caagaccgca accgcgcgcg
      601 tattcctgcg cccgggcact ggcaagatct ccatcaacaa ccgcagcctg gataacttct
      661 tcggccgcga gaccgctcgc atggtcgtgc gtcagccgct ggagctgacc gagaccaccg
      721 agaagttcga catctacgtc accgttctcg gtggtggtgt cagcggtcag gctggtgcca
      781 tccgtcacgg catcacccgc gctctgatcg agtacgacga gagcctgcgc agcccgctgc
      841 gtaaagccgg ctacgtcact cgtgacgccc gcgaagtcga gcgtaagaaa gtgggtctgc
      901 gcaaagcgcg taagcgtccg cagtactcca agcgttaatt cgctgctacg ttcaaagacg
      961 cccagttcct gccggagctg ggcgtttttt attgccttcg attttctctg cgacaacctg
     1021 tcgcattggt ggaaggcccg atctgcaagg gctgcgacca ttttgtatcg ggtaattacc
     1081 ttgtcagaaa agggggtttt ctttaccatt cggcaaattt ttgtgcggcc cgatttatta
     1141 cttagtagag gcctgacaac aggccacaaa gctgatggga gacgactgaa tgagcaatga
     1201 cggcgtgaat gcaggccggc gtcgcttcct ggtagcggcc acttcggtgg ttggtgctgc
     1261 cggagcggtg ggggctgcga ctccgttcgt ggggtcatgg ttccccagtg ccaaggccaa
     1321 ggcggccggc gcaccggtga aagtgaatat cgccaaggtc gagcccggcc agcagatgat
     1381 tgccgaatgg cgtggtcagc cggtcttcat cgtgcgccgc accgaagaga tcctggccaa
     1441 cctgaccaag atcgaaggca gcgtcgccga tcctgaatcc gccgcttccg tgcagccgga
     1501 gtacgtcgac aagaagacgc gcgcgatcaa gccggaaatt ctggtgctgg tcggtctgtg
     1561 cacccacctg ggctgctcgc cgtccttccg tcccgaagtc gccccggccg acctcggtcc
     1621 ggagtgggtc ggtggctatt tctgcccgtg ccacggctcc cgttacgaca tggcgggtcg
     1681 tgtctacaag gcccagcccg cgccgctgaa cctgccggtt ccgccgcatt cctacgagtc
     1741 cgatgacgtc atcatcgtcg gcgtggacca ggagaaagca tgatggaaaa attcatggcc
     1801 tggatcgatg cgcgcttccc cgcgacccag atgtgggaag accatctgag caagtactac
     1861 gctccgaaga acttcaactt cttctatttc ttcggctcgc tggccctgct ggtgctggtc
     1921 aaccagatcc tcaccggcat ctggctgacc atgagcttca c
//
LOCUS       DATIHC010000438         2428 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_23937, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000438 DATIHC010000000
VERSION     DATIHC010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2428)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2428
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23937"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..795)
                     /locus_tag="VLF16_07075"
     CDS             complement(<1..795)
                     /locus_tag="VLF16_07075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004422151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase"
                     /protein_id="HSX70680.1"
                     /translation="MLFAALLAGLCNHAVAWSNHSLGSLLALREEPALHEAVVVEPLE
                     AFLADQAPALERLLDEQEAYARAHFSYYPARPDELRWRADAAGDRRTAFFQALRINPE
                     IKLASFVQQLPGQDAGGRPLLRGEDVLVFHKVGPWTHWRYLALKNGEQVSALQVLASA
                     ADEPDYGHDINLFSDNPGAAGQRYNFGPQPFGDARFEYSSQAPFHIGYYHESALIFAA
                     APYLGQTLPHWRVYQYSGLARLAFASGHPYWGYRFLGWAMHYLQDLT"
     gene            complement(910..1761)
                     /locus_tag="VLF16_07080"
     CDS             complement(910..1761)
                     /locus_tag="VLF16_07080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015276210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HSX70681.1"
                     /translation="MFKLHFKDGRQAPLWLVDERFTLGQDRRNDLVLEDAGISAFHAE
                     IRRENGLYYLSDCDSELGTFVNDERIVTRYQLRSEDRLRLGEVELLLTDPNKTRAHVE
                     AAQRWFLQVIQGEHEGKKFHVGGSMTFGRSVKCELCFSDAQLSRRHCEFFLRDDGLEV
                     KDLASANGVLVNGEKTAAAVLKPGDQVRMGSVVLLVIGPKVDTPVTAEEGEDATLFVR
                     AVDLPKPAPKTRPATAGTATINPLRAAAQAQAAPAPARSGGSALGIGLALVAILVAVG
                     VSFAFLF"
     gene            complement(1771..>2428)
                     /locus_tag="VLF16_07085"
     CDS             complement(1771..>2428)
                     /locus_tag="VLF16_07085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HSX70682.1"
                     /translation="PAQDSAEHFFKQALAVDADNDEALAGLQRIREAQIKVFTDLAEQ
                     RLADGLLTEPAEDNADHYYRQALAIEPQHAGALAGLQKVLEARIARYLQLAEQSIADK
                     RLLLPEEDSAVYYYRQILGWAPDNPDALTGLSHVALQYRDLAGSAYRRGDFPAALAMI
                     DRGLQAEPENPELLQMRGDHQQLLDEARSARTRAAASQAERERNANPIKRAWNNLFGQ
                     "
BASE COUNT          380 a          799 c          868 g          381 t
ORIGIN      
        1 ggtgaggtcc tgcaggtagt gcatggccca accgaggaag cggtagcccc agtacggatg
       61 gccgctggcg aaggccagcc gggccaggcc gctgtactgg taaacgcgcc agtgcggcag
      121 ggtctgcccc aggtagggcg cggcggcgaa gatcagcgcc gactcgtggt agtagccgat
      181 atggaacggc gcctgggagg aatactcgaa gcgcgcgtcg ccgaacggct gcgggccgaa
      241 gttgtagcgc tggccggcgg cgcctgggtt gtcgctgaac aggttgatgt cgtggccgta
      301 gtccggctcg tccgccgcgc tggccagcac ctgcagtgcg ctcacctgct cgccgttctt
      361 cagcgccagg tagcgccagt gcgtccaggg cccgaccttg tggaacacca ggacgtcctc
      421 gccacgcagc agcggccggc caccggcgtc ctggcccggc agctgctgga cgaagctcgc
      481 cagcttgatt tccggattga tgcgcagggc ctggaagaat gccgtacggc ggtcgccagc
      541 ggcatcggcc cgccagcgta gttcgtcggg ccgcgccggg taataggaga agtgcgcgcg
      601 ggcgtaggcc tcctgctcgt ccagcagccg ctcgagggcc ggtgcctgat cggcgaggaa
      661 ggcctccagc ggctcgacca cgaccgcctc gtgcagcgcc ggctcttcgc gcaaggccag
      721 caggctgccc agcgaatggt tggaccaggc cacggcatgg ttgcacaagc cggccagcaa
      781 agcggcgaac aacagcggga cgagtgactt cacggcgact ccgatgcgcg agattaggcc
      841 gcagaggcta accccgccgg cgcgcgccga cactgtcgag gcgcgacatc gtcactcacc
      901 gatcgggctt cagaacagga acgcgaacga aaccccgacc gccaccagaa ttgccaccaa
      961 cgccaggccg atccccagtg ccgagccgcc ggacctggcc ggcgccggcg cggcctgggc
     1021 ctgggcggcg gcacgcagcg ggttgatggt cgccgtgccg gcagtggccg gccgggtctt
     1081 gggcgccggt ttgggcaggt caacggcgcg cacgaacagg gtcgcgtcct cgccctcctc
     1141 cgccgtcacc ggggtgtcga ccttgggacc gatcaccagc agcaccaccg agcccatgcg
     1201 cacctggtcg ccaggcttga gcacggcggc ggcggtcttc tcgccattga ccagcacgcc
     1261 gttggctgag gccagatcct tgacctccag cccgtcgtcg cgcaggaaga attcgcagtg
     1321 gcggcgcgac agctgggcgt cgctgaaaca cagctcgcac ttgaccgagc ggccgaaggt
     1381 catcgagcca ccgacgtgga acttcttgcc ctcgtgctca ccctggatga cctggaggaa
     1441 ccagcgctgc gccgcctcga cgtgcgcccg ggtcttgttc gggtcggtga gcaatagctc
     1501 cacctcgccg aggcgcagac ggtcctcgga acgcagctgg tagcgcgtga cgatgcgctc
     1561 gtcgttgacg aaggtaccca gctcgctgtc gcaatcgctg aggtagtaga ggccgttctc
     1621 ccggcggatc tcggcgtgga aggcgctgat gccggcatcc tccagcacca ggtcgttgcg
     1681 cctgtcctgg cctagggtga agcgctcgtc caccagccag aggggggcct gacggccgtc
     1741 cttgaaatgc agcttgaaca tggatggatc ctactgaccg aagaggttgt tccaggcacg
     1801 tttgatcggg ttggcgttgc gttcgcgctc ggcctgggag gccgcggccc gagtgcgcgc
     1861 ggagcgcgcc tcgtcgagca gttgctgatg gtcgccacgc atctgcagca gctcggggtt
     1921 ctccggctcg gcctgcaggc cgcggtcgat catggccagg gcggcgggga agtcgccgcg
     1981 acgataggcg gaaccggcga gatcgcggta ttgcagggcc acatggctga ggccggtgag
     2041 cgcgtcgggg ttgtccggcg cccagccgag gatctgccgg tagtagtaca ccgcgctgtc
     2101 ttcctcgggc agcagcaggc gcttgtcggc gatgctctgc tcggcgagct gcagatagcg
     2161 cgcgatgcga gcctccagta ccttctgcag gccagcgagc gcaccggcgt gctgcggctc
     2221 gatggccagg gcctggcgat agtaatgatc ggcgttgtcc tcggccggct cggtgagcag
     2281 gccgtcggcc aggcgctgct cggccaggtc ggtgaacacc ttgatttgcg cctcacggat
     2341 gcgctgcagc ccggccagcg cctcgtcgtt gtcggcgtcg acggcgagag cctgcttgaa
     2401 gaaatgctcg gcgctgtcct gcgccggc
//
LOCUS       DATIHC010000439         1621 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29204, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000439 DATIHC010000000
VERSION     DATIHC010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1621
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29204"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            44..508
                     /gene="bfr"
                     /locus_tag="VLF16_07090"
     CDS             44..508
                     /gene="bfr"
                     /locus_tag="VLF16_07090"
                     /EC_number="1.16.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004421420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004322 - ferroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA];
                     GO_process: GO:0006880 - intracellular sequestering of
                     iron ion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HSX70683.1"
                     /translation="MKGATEVVDYLKDLLRGELAARDQYFLHSRMYQDWGFAKLYERI
                     NHEMEEETQHADALLQRILFLEATPDMTPKAIYPGATVPDMLKSDLKLEYEVRAALAK
                     GIELCEQHGDYMSRDILVLQLNDTEEDHAYWLEQQLGLIDRIGVQNYLQSQA"
     gene            844..>1621
                     /locus_tag="VLF16_07095"
     CDS             844..>1621
                     /locus_tag="VLF16_07095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019340216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HSX70684.1"
                     /translation="MLAVGAAVTALPVYAAEPTEEAVTLDAVSITGEADSGLTDVTED
                     TQSYTSGSANTATPLKMSLRETPQSVTVVTQQRMEDQDLQTIADVVNNTTGVSLNRYE
                     TSRGQINARGFELNSLMIDGVPTIWEQPWSSGEIFGSLAMYDRVEVVRGANGLMTGAG
                     DPSASLNMVRKRANSRELKGSVELSAGTWDTYGTLGDVSMALNEAGTVRARLVGETNQ
                     GDSWIDMNSNERQSYYGTMDIDLSDDTTLWFGMSRQENKTD"
BASE COUNT          342 a          499 c          476 g          304 t
ORIGIN      
        1 gaagctgccg ccttgaacgc tgtttttacc agggaaatga gtcatgaaag gcgcgaccga
       61 agtcgtcgat tatctgaagg atctgctgcg cggtgagctg gccgcccgcg atcaatactt
      121 cctgcattcg cggatgtacc aggactgggg cttcgccaag ctctacgagc ggatcaacca
      181 cgagatggag gaggaaaccc agcacgccga cgctctgctg cagcgcatcc tgttcctcga
      241 ggccaccccg gacatgacgc ccaaggcgat ctacccgggc gccaccgtgc cggacatgct
      301 gaagagcgat ctgaagctgg agtacgaagt gcgcgccgcg ctggccaagg gcatcgagct
      361 gtgcgagcag cacggcgact acatgagccg cgacatcctg gtgctgcaac tcaacgacac
      421 cgaggaagac cacgcctact ggctggagca gcagctcggc ctgatcgacc gcatcggcgt
      481 gcagaactac ctgcagtcgc aggcctgagg gcgggctgat ctggagtgcg catggcgcac
      541 cctggggagt cgagttggaa tgaaaaggga gccagtggct cccttttttt acgcccccag
      601 tttctgacgt cgcgccgacg tgagcgatgc ctcgcagtga tgtcacaacg ccgctagcaa
      661 acctgaattc caattgcaat tctttcgcaa caaggcatat cggtttatca tgagaattat
      721 tatcaccaac actattataa accgctcgga agtatcctca tgtccctcag ttccctgcgt
      781 cgtcaagacg ctgctgtagt gcgttcgtct ttggctctgc gtccgctggc cctggccgtt
      841 cacatgctgg ccgtaggcgc cgccgtcact gccctgccgg tatatgccgc agagccgacc
      901 gaggaagccg tcacgctgga cgccgtctcc attactggcg aagccgacag cggtctcact
      961 gatgtgaccg aggataccca gtcctatacc tccggttccg caaacaccgc tacgccgctg
     1021 aaaatgtcgc tgcgcgagac ccctcagtcg gtcaccgtgg tcacccagca gcgtatggaa
     1081 gaccaggatc tgcagaccat tgctgacgtg gtcaacaaca ccactggtgt ttccctcaat
     1141 cgctacgaaa ccagccgggg ccagatcaat gctcgtggtt tcgagctcaa ctcgctgatg
     1201 atcgacggcg tgccgaccat ttgggagcag ccgtggagct cgggcgagat cttcggcagc
     1261 ctggccatgt atgaccgcgt agaagtcgtg cgcggcgcca acggtctgat gaccggtgct
     1321 ggcgatcctt ctgcatccct caacatggta cgcaagcgcg ccaatagccg tgagctgaag
     1381 ggttcggtag agctcagcgc cggtacctgg gacacctacg gaaccttggg cgacgtctcc
     1441 atggcgttga atgaggccgg caccgtccgc gcccgtctgg tcggcgaaac caaccagggc
     1501 gacagctgga tcgacatgaa ctcgaacgag cgccagtcct actacggcac catggatatc
     1561 gacctgagcg acgacactac gctgtggttc ggtatgagcc gccaggagaa caagaccgac
     1621 t
//
LOCUS       DATIHC010000440         2156 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19874, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000440 DATIHC010000000
VERSION     DATIHC010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2156
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19874"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..254
                     /locus_tag="VLF16_07100"
     CDS             <1..254
                     /locus_tag="VLF16_07100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003292622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSX70685.1"
                     /translation="DWRTTTSLNLWAKARYKSETVSDEDLEKRPAYTLVDVGGLYRVS
                     KNMDVYAGLYNVFDRDVSSEDYGKTLDGRRLNMGVALSF"
     gene            complement(261..941)
                     /locus_tag="VLF16_07105"
     CDS             complement(261..941)
                     /locus_tag="VLF16_07105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003292621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSX70686.1"
                     /translation="MKLLVVEDHPALRDLLLRHLQRGGFVVDVAEHGRQAVAMLSLSR
                     YDAMLLDLGLPDMNGLAVLAARASTRNADLPCIILTACDGLEQRIAGLDAGADDYLLK
                     PFEMAELEARLRAVLRRPGPRAERRLQLGNLSFCLASRDVHVGPQPLLLSKREMALLE
                     ELLRCAPRVAIKDHLEERLYALSEAVTPNAVEALVSRLRRKLINAGADSGIETLRGLG
                     YRLAPSAG"
     gene            1118..1423
                     /locus_tag="VLF16_07110"
     CDS             1118..1423
                     /locus_tag="VLF16_07110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003292620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70687.1"
                     /translation="MRSRDLNLSPQARYRLAIAARALLAIVGGYAFAAASTASLALAL
                     PLPRPQAVLAATQLSFALYCALVIWAFSAASVARAWLVAAALCAVPLLHLSLQGAWS"
     gene            1420..>2156
                     /locus_tag="VLF16_07115"
     CDS             1420..>2156
                     /locus_tag="VLF16_07115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014854081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-associated TM helix domain-containing
                     protein"
                     /protein_id="HSX70688.1"
                     /translation="MKALGFRQANAWLHTWSGLLLGWLLYAVFLTGTLSFFQDEISLW
                     MKPEQHVSRPDGASVDHALQRLALLAPQAAQWNITLPDERNAALQVQWFEQGERIGKG
                     GGKRLTLNAANGEPIEVRETRGGSFLYRFHFELYGMPRGVARWIVGIATMFMLVAIVG
                     GVITHKKIFKDFFTFRPRKGQRSWLDAHNATAVLALPFHFMITYSGLLLLMFMLMPWG
                     VDSAYQGDRQAFFNEARGRGAPAEHRQ"
BASE COUNT          345 a          770 c          700 g          341 t
ORIGIN      
        1 tggactggcg caccaccacc agcctgaacc tctgggcgaa ggcgcgctac aagagcgaaa
       61 ccgtgtcgga cgaggacctg gagaagcgcc cggcctacac cctggtggac gtcggcgggc
      121 tgtaccgggt gagcaagaac atggacgtct atgccggcct gtacaacgtg ttcgaccgcg
      181 acgtctccag cgaggactac ggcaagacgc tcgacggccg ccggctgaac atgggtgtcg
      241 cgctgagctt ctgaccgggc tcagccggcg ctcggcgcca ggcggtagcc gagcccgcgc
      301 agggtctcga tgccgctgtc ggcgccggcg ttgatcagct tgcggcgcag ccgcgagacc
      361 agcgcctcga cggcattggg cgtgaccgcc tcgctgaggg catagaggcg ctcctcgagg
      421 tgatccttga tcgccacgcg cggggcacag cgcagcagtt cctcgagcag ggccatctcg
      481 cgcttggaca gcagcagcgg ctgcggcccg acatgcacgt cgcgactggc caggcagaag
      541 ctcaggttgc ccagctgcag acggcgctcg gcccgcggcc ccggccgccg cagcacggcc
      601 cgcagacgag cctccagctc ggccatctcg aagggcttga gcaggtagtc gtcggcaccg
      661 gcgtcgagcc cggcgatgcg ctgctcgagg ccgtcgcagg cggtgaggat gatgcagggc
      721 aggtcggcgt tgcgcgtgga agcacgggcg gcgagcaccg ccagcccgtt catgtccggc
      781 aggcccaggt cgagcagcat ggcgtcgtag cggctcagcg acagcatcgc cacggcctga
      841 cgcccgtgct ccgcgacatc gacgacgaag ccgccgcgct gcaggtgcct cagcaacaga
      901 tcacgcagcg ccggatggtc ttcaactacg agcaacttca tgacattcac cgcgtatacg
      961 tcagccttgg gtcagccaag gctggaatag tggaaacctg aatactctat caaattattc
     1021 tgataatcat tcctaacaaa taccatgaca gtctctttcg cttcatccgg tcgccttccc
     1081 gcccggccgc tcgcctcggt tcgaggaggc ccccgccatg cgctcgcgtg acttgaatct
     1141 ctcgccgcag gcgcgctacc ggctcgcgat tgccgcgcgc gcattgctgg ccatcgtcgg
     1201 tggctacgcc ttcgcggcgg cgagcaccgc gagcctcgca ctcgccctgc cgctgccccg
     1261 tccgcaggcg gtgctcgccg ccacgcagct gtccttcgcg ctctactgcg cgctggtgat
     1321 ctgggcattc agcgccgcca gcgtcgcgcg cgcctggctg gtggccgccg ccctgtgcgc
     1381 ggtgccgctg ctgcacctgt cgctgcaggg agcctggtca tgaaggcgct cggcttccgc
     1441 caggccaacg cctggctgca cacctggagc gggctgctgc tcggctggct gctctacgcg
     1501 gtgttcctca ccggcaccct gagcttcttc caggatgaaa tcagcctctg gatgaaaccg
     1561 gagcagcacg tctcccgccc cgacggcgcc agcgtcgacc acgcgctgca gcggctcgcg
     1621 ctgctggccc cgcaggcggc gcagtggaac atcaccctgc ccgacgaacg caacgccgcc
     1681 ctgcaggtgc aatggttcga gcagggcgag cgcatcggca agggcggcgg caagcgcctg
     1741 accctgaacg cggcgaacgg cgagccgatc gaggtgcgcg aaacccgcgg cggcagcttc
     1801 ctctaccgct tccacttcga gctctacggc atgccccgcg gcgtcgcgcg ctggatcgtc
     1861 ggcatcgcca ccatgttcat gctcgtcgcc atcgtcggcg gggtgatcac ccacaagaag
     1921 atcttcaagg acttcttcac cttccgtccg cgcaaggggc agcggtcctg gctggatgcg
     1981 cacaacgcca ccgccgtgct cgccctgccc ttccacttca tgatcaccta cagcggcctg
     2041 ttgctgctca tgttcatgct catgccctgg ggcgtggaca gcgcctacca gggcgaccgg
     2101 caggccttct tcaacgaggc ccgcggacgc ggcgcgcccg ccgaacaccg ccagga
//
LOCUS       DATIHC010000441         3296 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36376, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000441 DATIHC010000000
VERSION     DATIHC010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3296
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36376"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..384)
                     /locus_tag="VLF16_07120"
     CDS             complement(<1..384)
                     /locus_tag="VLF16_07120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017676578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HSX70689.1"
                     /translation="MNHFLLLLPAALLVAGSYALADDEALTINGCRIEPGSHCPGADL
                     RGADLRNQDMRRMDLSGADLSGADLRHATLDLANLEKATLQRANLTRASLQQSNLRLA
                     DFSHAKLVAVQGWGLFGQAAQFQGAD"
     gene            complement(497..2368)
                     /gene="exaA"
                     /locus_tag="VLF16_07125"
     CDS             complement(497..2368)
                     /gene="exaA"
                     /locus_tag="VLF16_07125"
                     /EC_number="1.1.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinoprotein ethanol dehydrogenase"
                     /protein_id="HSX70690.1"
                     /translation="MTRTTLPSTATPLARSVHSLILGLALVSSGSVFAKSVTWDDIAN
                     DHTTTADVLQYGLGTNAQRWSPLALVNDQNVFKLTPAWSFSFGDEKQRGQESQAIVRD
                     GVIYVTGSYSRVFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKIFFGTLD
                     ASVVALNKDTGKVVWKKKFADHSAGYTMTGAPTLVKDGKTGKVMLIHGSSGDEFGVVG
                     KLFARDPDSGEEIWMRPFVEGHMGRLNGKESTPTGDVKAPSWPDDPNSPTGKKEAWSQ
                     GGGAPWQSASFDAETNTIIVGAGNPAPWNGWARTADGGDPKDYDSLYTSGQVGVDPST
                     GEVKWFYQHTPNDAWDFSGNNELVLFDYKDKDGKVVKATAHADRNGFFYVVDRNNGKL
                     QNAFPFVDGITWASHIDLKTGRPVENEGQRPPKPEPGQTRGKAVEVSPPFLGGKNWNP
                     MAYSQDTGLFYVPANHWKEDYWAEEAHYKKGSAYLGMGFRIKRLYDDHVGILRAMNPT
                     TGKVVWEHKERLPLWAGVLATKGNLVFTGTGDGFFKAFDARNGKELWKFQVGTGIVSP
                     PVTWEQDGEQYIGVTTGYGGAVPLWGGDMADLTKPVAQGGSFWVFKLPSWDKQTASR"
     gene            2692..3117
                     /gene="pedF"
                     /locus_tag="VLF16_07130"
     CDS             2692..3117
                     /gene="pedF"
                     /locus_tag="VLF16_07130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009622924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-550 PedF"
                     /protein_id="HSX70691.1"
                     /translation="MNNKNLLRGLLFGLGLGACAFALAHGDVVPQNVNTEGLKPLGET
                     WLDENPYRENPKAIEIGASAYNQNCAACHGLEAKSGGIAPDLRYLELGLTGDEWFKER
                     VINGAVRDGRVYMPKMANFLSQEALWAIRSYLESVHVEQ"
BASE COUNT          468 a         1068 c         1189 g          571 t
ORIGIN      
        1 gtcggcgccc tggaactgcg cggcctggcc gaacagcccc cagccctgca cggccaccag
       61 cttggcatgg ctgaagtcgg ccagacgcag attgctctgc tgcaggctgg cgcgggtcag
      121 gttggcccgc tgcagcgtgg ccttctcgag gttggccagg tccagcgtgg cgtggcgcag
      181 gtcggcaccg gacagatcgg cgccggacag gtccatgcgg cgcatgtcct ggttgcgcag
      241 gtcggcgccc ctgaggtcgg cgccggggca gtggctgccc ggctcgatgc ggcagccgtt
      301 gatcgtcagg gcttcgtcgt cggcgagggc atagctgccg gcgaccagca gggcggccgg
      361 cagtaacagc agaaagtgat tcatggccag gctccatggg tgcgccgggc gcaccggtgt
      421 cggcgcggaa aggggaggcc ggtgcgcgag gcaccggccg gggtgtggag tgccggtgcg
      481 cgcaccggct gccggctcag cggctggcgg tctgcttgtc ccagctcggc agcttgaaca
      541 cccagaacga gccgccctgg gccaccggct tggtcaggtc ggccatgtcg ccgccccaca
      601 gcggtacggc gccgccgtag ccggtggtca cgccgatgta ctgctcgccg tcctgctccc
      661 aggtaaccgg cggggagacg atgccggtgc cgacctggaa cttccacagc tccttgccgt
      721 tcctggcgtc gaaggccttg aagaagccgt cgccggtgcc ggtgaacacc aggttgccct
      781 tggtcgccag cacgccggcc cacagtggca ggcgctcctt gtgctcccag acgaccttgc
      841 cggtggtcgg gttcatcgca cgcaggatgc cgacgtggtc gtcgtacagg cgcttgatgc
      901 ggaagcccat gcccaggtag gcggagccct tcttgtagtg cgcctcctcg gcccagtagt
      961 cctccttcca gtggttggcg gggacgtaga acaggccggt gtcctggctg taggccatgg
     1021 ggttccagtt cttgccaccg aggaagggcg gcgagacttc caccgccttg ccgcgggtct
     1081 ggcccggctc cggcttgggc gggcgctggc cctcgttctc gaccgggcgg ccggtcttca
     1141 ggtcgatgtg gctggcccag gtgatgccgt cgacgaaggg gaaggcgttc tgcagcttgc
     1201 cgttgttgcg atcgaccacg tagaagaagc cgttgcggtc ggcatgggcg gtggccttga
     1261 cgaccttgcc gtccttgtcc ttgtagtcga acagcaccag ctcgttgttg ccggagaagt
     1321 cccaggcatc gttcggggtg tgctggtaga accacttcac ctcgccggtg ctcgggtcga
     1381 cgccgacctg gccggaggtg tacaggctgt cgtagtcctt ggggtcgccg ccgtcggcgg
     1441 tgcgcgccca gccgttccac ggcgccgggt tgcccgcgcc gacgatgatg gtgttggtct
     1501 cggcatcgaa gctcgcgctc tgccacggtg cgccgccgcc ctggctccag gcctccttct
     1561 tgccggttgg cgagttgggg tcgtccggcc aggagggtgc cttgacgtcg ccggtcgggg
     1621 tgctctcctt gccgttcagg cggcccatgt ggccctccac gaaaggccgc atccagatct
     1681 cctcgccgct gtccgggtcg cgggcgaaca gcttgccgac cacgccgaac tcgtcgccgg
     1741 agctgccgtg gatcagcatc accttgccgg tcttgccgtc cttcaccagg gtcggcgcgc
     1801 cggtcatggt gtagccggcg gagtggtcgg cgaacttctt cttccagacg accttgccgg
     1861 tgtccttgtt cagcgccacc acggaggcgt cgagggtgcc gaagaagatc ttgtcgccgt
     1921 agatggcggc gccgcggttg accacgtcgc agcacgggcg gatgtcgtcc ggcaggcggt
     1981 ggttgtaggt ccacaggcgc ttgccggtct tggcatcgag ggcgaacacg cgcgagtagg
     2041 aaccggtgac gtagatcacc ccgtcgcgga cgatggcctg ggactcctgg ccgcgctgct
     2101 tctcgtcgcc gaaggagaag gaccaggccg gggtcagctt gaacacgttc tggtcgttga
     2161 ccagggccag cgggctccag cgctgggcat tggtgcccag gccgtactgc aacacgtccg
     2221 cggtggtggt gtggtcgttg gcgatgtcgt cccaggtcac cgacttggcg aagacgctgc
     2281 cggacgacac cagggcgagg ccgaggatca ggctgtgcac gctgcgcgcc agcggggtgg
     2341 cagtgctggg gagtgttgtt cttgtcatgt ttgcggttcc cataggtttg atggacacga
     2401 ggtcttccgg gggtggcacc gaccggcgac ccggtgcgat cgatagtggg agcgggacgg
     2461 ccgcgcgcga cacggaaaaa ctcccggcgg ggccgggaaa aattcccagt ccgggcatga
     2521 cttggcactg ctgccaacgg ctgccgcctg gcgtaccgca gggctagtac caagggcgta
     2581 ggcggcggcc accaaagcag cattctggcg ccgccggggc ctgcctagga tgcggtcgac
     2641 gcgctgacca caagcgcctg ccttgccccg catcacgatg aggacgacgt catgaacaac
     2701 aagaatctgc ttcgcggcct gctcttcggc ctcggcctcg gtgcctgcgc cttcgccctg
     2761 gcccacggcg acgtggtgcc acagaacgtc aacaccgagg ggctgaagcc gctcggcgaa
     2821 acctggctgg acgagaaccc ctaccgggag aaccccaagg ccatcgagat cggcgcctcc
     2881 gcctacaacc agaactgcgc ggcctgtcac ggcctggagg ccaagtccgg cggcatcgcc
     2941 ccggacctgc gctacctgga gctgggtctg accggcgacg agtggttcaa ggagcgggtg
     3001 atcaacggcg ccgtgcgcga cggtcgcgtg tacatgccga agatggccaa cttcctcagc
     3061 caggaagcgc tgtgggccat ccgctcgtac ctggagagcg tgcacgtcga gcagtgagcc
     3121 ggcgcaccgt gcggggagcc gacgtcgtgt tccgcctggt atgcctgctg tgcctgctgc
     3181 tcggcgcgcc cgcctgggcg gccgagatcg atccgcaggg atcgccgatg tggcagttcc
     3241 accgccagcg gctgctcggc accgacccgg tgcggttcga cgcccgggtg gtggtg
//
LOCUS       DATIHC010000442         2678 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_3575, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000442 DATIHC010000000
VERSION     DATIHC010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2678
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3575"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1017
                     /gene="dapC"
                     /locus_tag="VLF16_07135"
     CDS             <1..1017
                     /gene="dapC"
                     /locus_tag="VLF16_07135"
                     /EC_number="2.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016494398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009016 - succinyldiaminopimelate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0019877 - diaminopimelate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyldiaminopimelate transaminase"
                     /protein_id="HSX70692.1"
                     /translation="TLGIPALREAIAAWCERRFGVPAGWLDAARHVLPVNGTREALFA
                     FTQTVVQRVDSSQERGLVVSPNPFYQIYEGAALLAGAEPYYLPCLEDNGFNPDFDAVP
                     ADVWQRCQILFLCSPGNPTGALVPLEQLKKLIALADEHDFVIAADECYSELYFDEENP
                     PPGLLTACAELGRSDFKRCVVFHSLSKRSNLPGLRSGFVAGDADILKAFLLYRTYHGC
                     AMPVQTQLASVAAWQDEGHVRANRDQYRAKYDAVLAILQPVLDVQRPDGSFYLWAKTP
                     GDDTTFTRELFAREHVTVVPGSYLSREVNGENPGAGRVRLALVAPLAECVEAAQRIRR
                     FVQG"
     gene            complement(1031..1708)
                     /locus_tag="VLF16_07140"
     CDS             complement(1031..1708)
                     /locus_tag="VLF16_07140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003244184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide lyase family 7 protein"
                     /protein_id="HSX70693.1"
                     /translation="MKSLSMLDLNTWNLTRPEATPVRTIEAAQIQSGYRDQYFYNDGA
                     RITFWAPVTGTSTGNSRFPRSELRETHPDGTARNWRYAEGDHSLRATLAVGQVPSNGT
                     VVIGQMHSKDNISPYIKLVYREVKGVGYINVSLRHKPTDTASPNVMTYKGMPLNYPFS
                     YAIEVSRTGWVKVNVAGMVYQGQIDPSWKDHRFYYKAGMYNLDNVGTASEGGRVSFEA
                     LGITHTP"
     gene            1911..2258
                     /locus_tag="VLF16_07145"
     CDS             1911..2258
                     /locus_tag="VLF16_07145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019333506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family reductase"
                     /protein_id="HSX70694.1"
                     /translation="MTYTLYGIKACDTMKKARTWLDEQGVSYAFHDYKTAAIDRANLQ
                     KWCAEHGWETVLNRAGTTFRKLDDAQKADLDQAKAIELMLAQPSMIKRPVLDLGDRTL
                     VGFKPELYAAALK"
     gene            2346..>2678
                     /locus_tag="VLF16_07150"
     CDS             2346..>2678
                     /locus_tag="VLF16_07150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70695.1"
                     /translation="MSAIHYDPTRHGDMPDVWREIGMPAVAVLRIGYEDSAGGLVERV
                     VETRLFADLAFGPTLLAHCRLRDALREFRIDRIHSCIDEASGEPVEDVYGHLHGLYAA
                     TPAFALDRL"
BASE COUNT          433 a          929 c          866 g          450 t
ORIGIN      
        1 accctgggca tcccggccct gcgcgaggcc atcgccgcct ggtgcgagcg ccgcttcggc
       61 gtgccggccg gctggctgga cgccgcccgc cacgtgctgc cggtcaacgg cacccgcgag
      121 gcgctgttcg ccttcaccca gaccgtggtg caacgcgtcg actcttcgca agagcgcggc
      181 ctggtggtca gccccaatcc gttttatcag atctacgaag gcgcggccct gctggccggc
      241 gccgagccgt actacctgcc atgcctggaa gacaacggtt tcaacccgga cttcgatgcc
      301 gtgccggccg acgtctggca gcgctgccag atcctcttcc tctgctcgcc gggcaacccc
      361 accggcgcgc tggtaccgct ggagcagctg aagaagctga tcgccctggc cgacgagcac
      421 gacttcgtga tcgccgccga cgagtgctac agcgagctgt acttcgatga agagaatccg
      481 ccgcccggcc tgctgaccgc ctgcgccgag ctgggccgca gcgacttcaa gcgctgcgtg
      541 gtgttccaca gcctgtccaa gcgctccaac ctgccgggcc tgcgctccgg tttcgttgcc
      601 ggcgacgccg acatcctcaa ggccttcctg ctgtatcgca cctaccacgg ctgcgccatg
      661 ccggtgcaga cccagctggc cagcgtcgcc gcctggcagg acgagggcca cgtgcgcgcc
      721 aaccgcgacc agtaccgcgc caagtacgac gccgtgctag caatcctcca gccggtgctg
      781 gacgtgcagc gcccggacgg cagcttctac ctgtgggcca agacgccggg cgacgacacc
      841 accttcaccc gcgagctgtt cgcccgcgag cacgtgaccg tggtgccggg ttcctacctg
      901 tcgcgcgagg tgaacggcga gaacccgggc gccggccgcg tgcgcctggc cctggtcgcg
      961 ccgctggccg agtgcgtcga ggcggcgcag cgcatccgcc gcttcgtcca gggctgagcg
     1021 tccacgcccc tcacggggtg tgggtgatgc ccagcgcctc gaaggacacg cggccgccct
     1081 cgctggcggt gccgacgtta tccaggttgt acatgccggc cttgtaatag aagcggtggt
     1141 ccttccagct cggatcgatc tgcccctggt agaccatgcc ggcaacgttg accttgaccc
     1201 agccggtgcg cgacacctcg atggcgtagc tgaacgggta gttcagcggc atgcccttgt
     1261 aggtcatcac gttcgggctg gcggtgtcgg tcggcttgtg gcgcagcgac acgttgatgt
     1321 agccgacgcc cttcacctcg cggtagacca gcttgatgta gggcgaaatg ttgtccttgg
     1381 agtgcatctg accgatgacc acggtgccat tggacggcac ctggccgacc gccagggtcg
     1441 cgcgcaggga atggtcgccc tcggcgtagc gccagttgcg cgcggtgccg tcggggtggg
     1501 tctcgcgcag ttcgctgcgg gggaagcggc tgttgccggt ggacgttccg gtcaccggcg
     1561 cccagaaggt gatgcgcgcg ccgtcgttgt agaagtactg atcgcggtag ccggactgga
     1621 tctgcgcggc ttcgatggta cgaacggggg tggcttccgg ccgggtcagg ttccaggtgt
     1681 tgagatcgag catggagagt gacttcacaa caaacccgcc tgcggaagaa tccggcccga
     1741 ggcgtggcaa agggggcgca acctcccagg tagcgaacag cgatttcaca tcgcgctacc
     1801 tgtatcgttt ttgacgccac aaacttgaca ccctggcgac caacggcagc cctcgcttgc
     1861 cgtggcataa tcgccgcctc cgagtcctaa attatttgcg agcaaattca atgacctaca
     1921 ccctgtacgg catcaaggcc tgcgacacca tgaagaaagc ccgcacctgg ctcgacgagc
     1981 agggcgtgag ctacgccttc catgactaca agaccgccgc catcgaccgg gcgaacctgc
     2041 agaagtggtg cgccgaacac ggctgggaaa ccgtgctgaa ccgtgccggc accaccttcc
     2101 gcaagctgga cgacgcgcag aaggccgatc tcgaccaggc caaggccatc gagctgatgc
     2161 tggcccagcc gtcgatgatc aagcgccccg tgctggacct cggcgaccgc acgctggtgg
     2221 gtttcaagcc cgagctgtac gccgccgcgc tgaagtgatc gcgcttcgtt gatctcggtc
     2281 tatgggcccg gcgcggcaaa ccggtagcgt ttgcctcccg ttcaatccgc gagaaggagc
     2341 gccccatgtc cgccattcat tacgacccga cccgccatgg cgacatgccc gacgtctggc
     2401 gcgagatcgg catgccggcc gtcgccgtgc tgcgcatcgg ctacgaggac agcgccggcg
     2461 gtctggtgga gcgggtggtg gaaacccgcc tgttcgccga cctggccttc ggtcctacgc
     2521 tgctcgccca ctgccgcctg cgcgatgcgc tgcgcgaatt ccgcatcgac cgcatccaca
     2581 gctgcatcga cgaggcctcg ggcgagccgg tcgaagacgt ctacgggcac ctgcacgggc
     2641 tctacgcggc cacaccggcc ttcgccctcg accgcctc
//
LOCUS       DATIHC010000443         3492 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8248, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000443 DATIHC010000000
VERSION     DATIHC010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3492)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3492)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3492
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8248"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..611
                     /locus_tag="VLF16_07155"
     CDS             <1..611
                     /locus_tag="VLF16_07155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003453446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HSX70696.1"
                     /translation="LMEGRSPLVRHRTLQGGEGMEVRLLPVKFNQAYNDYLKCTASLL
                     PVNFEQVRQTQLGFPDGGTTLEPLAQAKIDIILDFMKADPTVNRIQLDGHSDNSGNRL
                     TNRDVSRRRAMAVEEYLRSRGVPAEQIVVRFHGERYPLVKNTSEANRAKNRRVTMTLS
                     REPVLPPAPEAIPPASTPPATAPTPSEPAPAAEAPAAPAAKS"
     gene            728..1945
                     /locus_tag="VLF16_07160"
     CDS             728..1945
                     /locus_tag="VLF16_07160"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015277853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HSX70697.1"
                     /translation="MADVKKVVLAYSGGLDTSVILKWLQDTYNCEVVTFTADLGQGEE
                     VEPARAKAQAMGVKEIYIDDLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKR
                     LIEIANETGADAISHGATGKGNDQVRFELGAYALKPGVKVIAPWREWDLLSREKLMDY
                     AEKHAIPIERHGKKKSPYSMDANLLHISYEGGVLEDTWTEHEEDMWKWSVSPEAAPDT
                     PTYIELTYRQGDIVAIDGKDMTPAAVLAELNRIGGANGIGRLDIVENRYVGMKSRGCY
                     ETPGGTIMLKAHRAIESITLDREVAHLKDELMPKYASLIYTGYWWSPERLMLQQMIDA
                     SQSNVNGVVRLKLYKGNVIVVGRKSDDSLFDANIATFEEDGGAYNQADAAGFIKLNAL
                     RMRIAAGKGRKLF"
     gene            2038..2430
                     /gene="gloA"
                     /locus_tag="VLF16_07165"
     CDS             2038..2430
                     /gene="gloA"
                     /locus_tag="VLF16_07165"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011912386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004462 - lactoylglutathione lyase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0051596 - methylglyoxal catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HSX70698.1"
                     /translation="MRLLHTMLRVGDMDRSIAFYTEVLGMTLLRRKDYPEGQFTLAFV
                     GYGNEAENSVIELTHNWGVDQYELGTGYGHIALEVADVYKACDDIRARGGKVTREAGP
                     MKHGTSILAFVEDPDGYKIELLSPKRAD"
     gene            complement(2485..2667)
                     /locus_tag="VLF16_07170"
     CDS             complement(2485..2667)
                     /locus_tag="VLF16_07170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019693351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70699.1"
                     /translation="MSTGKEELELEDDFVAEESEDAGERTVEVAKTNLTKRRIIDNLL
                     EERRLQKQLNDYDFDL"
     gene            complement(2776..3414)
                     /gene="nth"
                     /locus_tag="VLF16_07175"
     CDS             complement(2776..3414)
                     /gene="nth"
                     /locus_tag="VLF16_07175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HSX70700.1"
                     /translation="MNAAKRHEIFRRLHEDNPEPKTELAYTTPFELLIAVILSAQATD
                     VGVNKATAKLYPVANTPEAIHALGVEGLSEYIKTIGLFNSKAKNVIETCRILVEKHGS
                     QVPDNREDLEALPGVGRKTANVVLNTAFRQPAMAVDTHIFRVSNRTGIAPGKNVLEVE
                     RKLVKFVPKEFLLDAHHWLILHGRYVCQARKPRCGACRIEDLCEYKAKTSDD"
BASE COUNT          658 a         1138 c         1097 g          599 t
ORIGIN      
        1 ggttgatgga agggcgcagc ccgctggtgc gtcaccgcac cctgcagggc ggcgagggca
       61 tggaggtgcg cctgctcccg gtcaagttca accaggccta caacgactac ctcaagtgca
      121 cggccagcct gctgccggtc aatttcgagc aggtgcgcca gacccagctg ggcttccccg
      181 acggcggcac caccctggag ccgctggccc aggcgaagat cgacatcatc ctcgacttca
      241 tgaaggccga tcccaccgtc aatcgcatcc agctcgacgg ccactcggac aattccggca
      301 atcgcctgac caaccgcgac gtctcgcgcc gccgcgccat ggcggtggag gaatacctcc
      361 gctcgcgcgg cgtgccggcc gagcagatcg tggtgcgttt ccatggcgag cgctacccgc
      421 tggtgaagaa caccagcgag gccaaccggg cgaagaaccg ccgagtgacc atgaccctgt
      481 cccgcgagcc ggtcctgccg ccggcaccgg aggcaattcc cccggccagc acgccgcccg
      541 ccaccgcgcc gactccgagc gagcccgcgc cggccgctga agccccggcg gcgcccgcgg
      601 cgaaatccta ggcacggcgg caaataaatc tgtcgctttg tcgttagagt ctgtcgcgcc
      661 cctgtaaatc attccgcacg gtcggtagaa tccccggttt tccgtacaac ccgtggagtt
      721 gattggcatg gcggacgtta agaaggtagt tctggcctat tccggtggcc tggacacctc
      781 ggtgatcctc aagtggctgc aagacaccta taactgcgaa gtggtgacct tcaccgccga
      841 cctcggtcag ggcgaagagg tcgagccggc ccgtgccaag gcccaggcca tgggcgtcaa
      901 ggaaatctac atcgacgacc tgcgcgaaga attcgtccgc gacttcgtgt tcccgatgtt
      961 ccgcgccaac accatctacg aaggcgagta cctgctgggt acttccatcg cccgtccgct
     1021 gatcgccaag cgcctgatcg agatcgccaa cgagaccggc gccgacgcca tctcccatgg
     1081 cgccaccggc aagggcaacg accaggtgcg tttcgaactg ggcgcctacg cgctgaagcc
     1141 gggcgtgaag gtgatcgccc cctggcgcga gtgggacctg ctgtcccgcg agaagctgat
     1201 ggactacgcc gagaagcacg ccatcccgat cgagcgccac ggcaagaaga agtcgccgta
     1261 ctccatggac gccaacctgc tgcacatctc ctacgagggc ggcgtgctgg aggacacctg
     1321 gaccgagcac gaagaagaca tgtggaagtg gagcgtctcg ccggaagccg ccccggacac
     1381 cccgacctac atcgagctga cctaccgcca gggtgacatc gtcgccatcg acggcaagga
     1441 catgaccccg gccgccgtgc tggccgagct gaaccgcatc ggcggcgcca acggcatcgg
     1501 ccgtctcgac atcgtcgaga accgctacgt cggcatgaag tcccgcggct gctacgagac
     1561 ccccggcggc accatcatgc tcaaggccca ccgcgccatc gagtcgatca ccctcgaccg
     1621 cgaagtggcc cacctgaaag acgagctgat gcccaagtac gccagcctga tctacaccgg
     1681 ctactggtgg agcccggagc gtctgatgct gcagcagatg atcgatgcct cgcagagcaa
     1741 cgtgaacggt gtggtgcgcc tgaagctgta caagggcaac gtcatcgtgg tcggccgcaa
     1801 gtccgacgac tcgctgttcg acgccaacat cgcgaccttc gaggaagacg gcggcgccta
     1861 caaccaggcc gacgccgcgg gcttcatcaa gctcaacgcg ctgcgcatgc gcatcgccgc
     1921 cggcaagggc cgcaagctgt tctgataagc tctgcgccca gagccagacg aaccccggcc
     1981 acgagccggg gttctgtttt atagagcccg aacgggccaa cgatgaggaa aaaaccgatg
     2041 agactgctgc ataccatgct gcgcgtcggc gatatggatc gctccatcgc cttctacacc
     2101 gaggtgctgg gcatgaccct gctgcgccgc aaggactacc cggaaggcca gttcaccctg
     2161 gccttcgtcg gctacggcaa cgaggccgag aacagcgtca tcgagctgac ccacaactgg
     2221 ggcgtggacc agtacgaact gggtaccggt tatggccaca tcgccctgga agtcgccgat
     2281 gtctacaagg cctgcgacga cattcgcgcc cgtggcggca aggtcacccg cgaggcgggc
     2341 ccgatgaagc acggcaccag catcctggcc ttcgtcgaag atccggacgg ctacaagatc
     2401 gagctgcttt cgcccaagcg cgccgactga gcggccgccg caacgaaaaa gccccgcatc
     2461 gcggggcttt tttcatgacg gcaatcagag gtcgaagtcg tagtcgttca gctgcttctg
     2521 caggcgacgc tcctcgagca ggttgtcgat gatgcggcgc ttggtcaggt tggtcttggc
     2581 gacttccacg gtgcgctcgc cagcgtcttc gctttcctcg gcgacgaaat cgtcttcgag
     2641 ttcgagttct tctttgccgg tgctcattag gcctactcca gggttcggag gctgatggcg
     2701 caccttatag cggcaaagac tggggccggt aaaaaagatt ttttcaattg agcccatgcc
     2761 cgattcacgg gcttctcaat cgtcagacgt cttcgccttg tactcgcaca gatcctcgat
     2821 gcggcaggcg ccacaacgcg gcttgcgcgc ctggcagacg tagcggccat gcaggatcag
     2881 ccagtggtgg gcgtccagga ggaactcctt gggcacgaac ttgaccagct tcctctccac
     2941 ttccagcacg ttcttgcccg gagcgatgcc ggtgcggttg ctcacccgga agatgtgcgt
     3001 gtccaccgcc atggccggct ggcggaaggc ggtgttgagc accacgttgg cggtcttgcg
     3061 gccgacgccc ggcagcgcct ccagatcctc gcggttgtcc ggcacctggc tgccatgttt
     3121 ctcgacgaga atacggcagg tctcgatgac gttcttggcc ttgctgttga acaggccgat
     3181 ggtcttgatg tactcggaga ggccctcgac gcccagcgca tggatggctt ccggggtgtt
     3241 ggccaccggg tacagcttgg ccgtggcctt gttcacaccg acgtcggtgg cctgagcgga
     3301 gaggattacc gcgatgagca gctcgaacgg cgtggtgtag gccagttcgg tcttgggttc
     3361 gggattgtct tcatgcaggc ggcggaagat ctcgtggcgc ttggcggcgt tcatcgggcg
     3421 tcgtcttggt tgaagtggcg gagcagggcg agcaacaggc cgagcaggat aaagtcgccg
     3481 gcggcgtgcg tc
//
LOCUS       DATIHC010000444         4205 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33956, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000444 DATIHC010000000
VERSION     DATIHC010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4205)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4205)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4205
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33956"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..826)
                     /locus_tag="VLF16_07180"
     CDS             complement(<1..826)
                     /locus_tag="VLF16_07180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCP four helix bundle domain-containing protein"
                     /protein_id="HSX70701.1"
                     /translation="MLRLFADLGFRWKIALPILLLAMLLLVMGGLGMQGIGQVADSST
                     RLAHRYLPAISLLLNADRDLYQAFVAERSLLDEAAGQYADALKASHAENLQQAYERVH
                     KYADMQPGPEAARLVADFDRGFAQWQATSSRVVELSTSDPAAASALSYGDSEAHFEAM
                     REPIDKLGELEDNAASAEGAAAIELGDQRSWQQGMVIVIGLLLCVVLVLGFPALVTRP
                     LHNLLYRIEQIAEGDGDLRVRLDVLSRDELGKLSDAFNRFLDKLQPLIREVGRVTGE"
     gene            938..1228
                     /locus_tag="VLF16_07185"
     CDS             938..1228
                     /locus_tag="VLF16_07185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013715180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HSX70702.1"
                     /translation="MERLMAITKEQLISDLAEATDLQKSDVRALLAQLGEIVADALEN
                     DGEISLPGIGKLKVSERPARTGRNPATGKAIQIAAKKAIKLVPAKALVDGLN"
     gene            1354..1662
                     /locus_tag="VLF16_07190"
     CDS             1354..1662
                     /locus_tag="VLF16_07190"
                     /inference="COORDINATES: protein motif:HMM:NF024546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRL-like family protein"
                     /protein_id="HSX70703.1"
                     /translation="MLKRILTATAFATLLSGCANGLSPVGVGLITDVKGPITATTAQG
                     SKQGTACATTIIGLVNKGDASIEAAKANGNISTVASADYHTKGFYPFYGKTCVNVTGQ
                     "
     gene            complement(1698..4067)
                     /gene="ligA"
                     /locus_tag="VLF16_07195"
     CDS             complement(1698..4067)
                     /gene="ligA"
                     /locus_tag="VLF16_07195"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HSX70704.1"
                     /translation="MTDAAQRVAELRAELDEHNYRYYVLDEPSVPDAEYDRLFRELQA
                     LEAEHPELVTPESPTQRVGGEALSAFGQVRHEVPMLSLGNGFEEDDLRAFDRSVQSGL
                     GVSGGGHAGDLFGGGAEVAYSCEPKLDGLAVSLLYRDGQLVRGATRGDGSTGEDISAN
                     VRTIRNVPLRLKGEGWPALLEVRGEVYMPRAGFEELNARQAEVGGKTFANPRNAAAGS
                     LRQLDSKITASRPLEFCCYGVGQVSGELPDTQFDMLQRLKTWGLPISRELKLAQGVEA
                     CLEYYRDIGERRMALPYDIDGVVFKVNNIEDQQQLGFRARTPHWALAQKFPAQEELTE
                     LLDVEFQVGRTGAVTPVARLKPVKVAGVTVANATLHNMDEVARLGLMIGDTVIIRRAG
                     DVIPQVMQVVTERRPADARAVHVPEQCPVCGSAVERTQLIKRSKGRETTSEGSVYRCV
                     GRLACGAQLKQAIIHFASRRALDIEGLGDKIVEQLVDTGLVASPADLFTLTYEQVVAL
                     EGFADLSTRNLLAAIKDSARPTLARFIYALGIPDVGEETAKLLARALGSLARIRVALP
                     EVLTYLPDVGLEVASEIHNFFEDAHNLKVIDDLLARGVELQEEGDLSPEFSACATLPG
                     FIDKLNIPFIAATGAEKLAARFGSLEGVINADWLDLRQVERLNEKAAKSLRDFFDIPA
                     NAEHAARIEVQLRAFGMHWASEKKVVEGLPLAGQTWVLTGTLEAMSRDVGKDKLESLG
                     AKVAGSVSAKTACVVAGPGAGSKLTKANELGVKVMDEAEFLQLLADYGL"
BASE COUNT          681 a         1448 c         1395 g          681 t
ORIGIN      
        1 cctcgccggt gacccggccg acttcgcgga tcagcggctg cagcttgtcg aggaaacggt
       61 tgaaagcgtc gctgagcttg cccagttcgt cgcgcgagag cacgtccagg cgcacgcgta
      121 ggtcgccgtc gccctcggcg atctgctcga tgcggtacag caggttgtgt aacgggcggg
      181 tcaccagcgc cgggaagccc agcaccagca ccacgcagag cagcaggccg atgacgatca
      241 ccatgccctg ttgccagctg cgctggtcgc ccagctcgat ggcggcggcg ccttcggcgc
      301 tggcggcgtt gtcttccagc tcgccgagct tgtcgatggg ctcgcgcatc gcctcgaagt
      361 gcgcctcgct gtcgccatag ctgagcgcgg acgccgccgc cggatcgctg gtggacagct
      421 ccacgacccg actggaggtg gcctgccact gggcgaagcc gcggtcgaaa tcggccacca
      481 gcctggcggc ctcaggcccg ggctgcatgt cggcatactt gtgcacgcgc tcgtaggcct
      541 gctgcaggtt ctccgcatgg gaggccttga gggcatcggc atactggccg gccgcctcgt
      601 cgagcaggct gcgttcggcg acgaaggcct ggtagaggtc gcggtcggca ttgagcagca
      661 ggctgatggc gggcaggtag cgatgggcga ggcgcgtgct ggaatcggcc acctgaccga
      721 tgccctgcat gcccaggcca cccatgacca gcagcagcat ggcgagcagc aggatcggta
      781 gagcgatttt ccagcggaac cccagatcgg cgaacagacg cagcatggtc gactccgaag
      841 cgcagtgatc atggttccag catagccgcc ctcatccgtc atcgctttgt ggtagcgtgc
      901 cggccgtaac gcccacccgc tgggcccctt cccccgtatg gagcgcctca tggccatcac
      961 caaagagcag ctgatttccg atctcgccga agccaccgac ctgcagaaga gcgacgtgcg
     1021 cgccctgctc gcccaactcg gcgagatcgt cgcggatgcc ctggagaatg acggcgagat
     1081 cagcctgccg ggcatcggca agctcaaggt cagcgagcgc ccggcccgca ccggccgcaa
     1141 cccggccacc ggcaaggcga ttcaaatcgc cgccaagaag gcgatcaagc tggtgccggc
     1201 caaggcgctg gtcgacggcc tgaactgatt cggcagaatt tgaaccagtc aacgctgcgg
     1261 acacgcgcgt ttgtgccgca gcgcatcctt gagtaaggtc gccgccagcc cggtattggg
     1321 ccgggtcgta ctaaaagcca aggatgctag aaaatgctga aacgtattct gactgccact
     1381 gccttcgcca ccctgctgag cggctgcgcc aacggcctgt ccccggtagg cgtcggcctg
     1441 atcaccgacg tgaaaggccc gatcaccgcc accaccgccc agggcagcaa gcagggcact
     1501 gcctgcgcca ccaccatcat cggtctggtc aacaagggcg acgcttccat cgaagcggcc
     1561 aaggccaacg gcaacatctc caccgtggcc agcgcggact accacaccaa gggcttctac
     1621 cccttctacg gcaagacctg cgtcaacgtc accggccagt gatggcccgg gccccggcgt
     1681 ccgccggggc ctcccgttca gaggccgtag tcggccagca gctgtagaaa ctcggcctcg
     1741 tccatcacct tcacgcccaa ctcgttggcc ttggtcaact tggaaccggc gcccggcccc
     1801 gccaccacgc aggcggtctt cgccgacacc gaccccgcca ccttggcgcc cagactctcc
     1861 agcttgtcct tgccgacatc gcggctcatg gcctccagcg tgccggtcag cacccaggtc
     1921 tgccctgcca gcggcaagcc ctcgaccacc ttcttctcgc tcgcccagtg catgccgaac
     1981 gcacgcagct gcacctcgat gcgtgcggcg tgctcggcgt tggccgggat gtcgaagaag
     2041 tcgcgcaggg atttcgcagc tttttcgttg agacgttcga cctgacgcag gtccagccag
     2101 tcggcgttga tcacgccctc cagactgccg aacctggccg ccagcttctc ggcaccggtg
     2161 gcggcgatga aggggatgtt gagcttgtcg atgaagcccg gcagggtcgc gcaggcggag
     2221 aactcggggc tgaggtcgcc ctcctcctgc agctcgacgc cgcgggccag caggtcgtcg
     2281 atgaccttga ggttgtgcgc gtcctcgaag aagttgtgaa tctccgaagc cacctccagg
     2341 ccgacgtccg gcaggtaggt aagcacctcc ggcagcgcca cgcggatacg cgccagggag
     2401 ccgagggcac gggccagcaa cttggcggtc tcctcgccca catccggaat gcccagggcg
     2461 tagatgaagc gcgccaaggt cgggcgggcg ctgtccttga tcgccgccag caggttgcgg
     2521 gtggacaggt cggcgaagcc ctccagcgcc accacctgct cgtaggtcag ggtgaacagg
     2581 tcggccggcg aggccaccag accggtgtcc accagctgct cgacgatctt gtcgccgagg
     2641 ccctcgatgt ccagggcgcg gcgcgaggcg aagtggatga tcgcctgctt gagctgcgcg
     2701 ccgcaggcca ggcggccgac acagcgatag accgagccct cgctggtggt ctcgcggccc
     2761 ttgctgcgct tgatcagctg ggtgcgctcg acggcggagc cgcacaccgg gcactgctcg
     2821 ggcacgtgca ccgcgcgggc gtccgccggg cggcgttcgg taaccacctg catcacctgc
     2881 ggaatcacgt cgccggcgcg gcggatgatc acggtgtcgc cgatcatcaa ccccagtcgc
     2941 gcaacttcgt ccatgttgtg cagagtggca ttggccacgg tgacaccggc caccttgacc
     3001 ggcttgaggc gtgccaccgg agtgacggcg ccggtgcggc cgacctggaa ctccacgtcg
     3061 agcagctcgg tgagctcctc ctgagccgga aacttctggg ccagcgccca gtgcggggtg
     3121 cgcgcgcgga agcccagctg ctgctggtcc tcgatgttgt tgaccttgaa caccacgccg
     3181 tcgatgtcgt agggcagcgc catgcgccgc tcgccgatgt cgcggtagta ctccaggcag
     3241 gcctcgacgc cctgggccag cttcagctcg cggctgatcg gcagacccca ggttttcagg
     3301 cgctgcagca tgtcgaactg ggtgtcgggc agctcgccgc tgacctggcc gacgccatag
     3361 cagcagaact ccagcgggcg gctggcggtg atcttcgagt ccagctggcg caggctgccg
     3421 gcggcggcgt tgcgcgggtt ggcgaaggtc ttgccaccca cctcggcctg acgcgcgttg
     3481 agctcctcga agccggccct gggcatgtac acctcgccac gcacttccag cagcgccggc
     3541 cagccctcgc ccttgaggcg cagcggcaca ttgcggatgg tacgcacgtt ggcgctgatg
     3601 tcctcgcctg tgctgccgtc gccgcgggtg gcgccgcgca ccagttggcc gtcgcggtac
     3661 agcaggctga ccgccaggcc gtcgagcttg ggctcgcagc tgtacgccac ctcggcgcca
     3721 ccgccaaaca ggtctccggc atggccaccg ccggagacgc cgagaccgct ctgcacgctg
     3781 cggtcgaacg cgcgcaggtc gtcctcctcg aagccattgc ccaggctgag catgggcacc
     3841 tcgtggcgca cctggccgaa ggcgctcagg gcctcgccgc cgacgcgctg ggtcggcgac
     3901 tccggcgtca ccagttccgg atgctcggcc tccagcgcct gcagctcgcg gaacaggcgg
     3961 tcgtactcgg cgtcgggcac gctcggttcg tcgagcacgt agtagcggta gttgtgctcg
     4021 tccagctcgg cgcggagctc ggcaacacgt tgggcggcgt cggtcatggt gcgtgtgtcc
     4081 tggaaaacga caagagcagc ctaggctgct cttggggatg catgcggcga agcgatcagc
     4141 gtttgccggc gagctgcttc ttgcgttcga attcgacgat gcgctggcgg tagtgttcga
     4201 tggtc
//
LOCUS       DATIHC010000445         5736 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10564, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000445 DATIHC010000000
VERSION     DATIHC010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5736
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10564"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1055)
                     /locus_tag="VLF16_07200"
     CDS             complement(<1..1055)
                     /locus_tag="VLF16_07200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HSX70705.1"
                     /translation="MAPSPHGDLPRLPPGHLPRPRLRDALLEADCRLRLLCAPAGSGK
                     SVLLSECLRQAPAGTRVVHLDLRGHPIGVEVFLDRLGAALGLTDADEEAIDRHLHDLT
                     QPLWLVFDDYPRMPADELDELLNTLVLDSPAQVSWWITSRRRPQMQLARLLLDGDLFE
                     LGSPELAFSEGELTELLQRAGHAWPRGQILDLLRQTRGWCAGLRLRLLGLKPGQALSA
                     DGNAGLLLDYLKHEVLDDLPSDWQLGLFTLAQFPSFDGELCEQLLGVGEGATLLQRLR
                     EGGLFIEALSQDGRLLCVRPEVAAILAEQLPSSMTKALFRKACQWYISREQVRPALEY
                     ALRAGQPDVAASLMQRYT"
     gene            complement(1182..2549)
                     /locus_tag="VLF16_07205"
     CDS             complement(1182..2549)
                     /locus_tag="VLF16_07205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011332510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1329 domain-containing protein"
                     /protein_id="HSX70706.1"
                     /translation="MKRILLQSSALALSLLATSVMAKVSPEEAAKLGTSLTPIGAEKA
                     GNADGSIPEWTGGLPTDAGAVDAKGFLADPFASEQPLFTITAANAEQYKDKLSAGQLA
                     MFKRYPDTYKIPVYPSHRSAALPDDIYAAAKTSALNTEGIDGGNGLKGFSDSRYYAFP
                     IPQSGVEVVWNHTTRYRGGNIKRYMTRVQPQANGAFNMVEFTDEVSYPGNLPDLDQSK
                     ADNILFYFIQNVTAPARLAGNVLLVHETIDQVKEPRMAWLYNAGQRRVRRAPQVAYDG
                     PATAADGLATSDNYDMFNGSPDRYDWQLVGKREMYIPYNSYKLDSPKLKYADILKAGH
                     INQDLTRYELHRVWEVVAKVKQGERHIYATRHMYFDEDTWQLALADHYDGRGQLWRVG
                     EGHAQQYYHKQVPGYTAEALYDLISGRYSVLGLKNEEKQSYEFGAKASASNYTPAALR
                     QAGVR"
     gene            complement(2583..4502)
                     /locus_tag="VLF16_07210"
     CDS             complement(2583..4502)
                     /locus_tag="VLF16_07210"
                     /inference="COORDINATES: protein motif:HMM:NF018662.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1302 domain-containing protein"
                     /protein_id="HSX70707.1"
                     /translation="MITRKKGRNGFGLSLLAAAVALGGVANVQAVGFNIGEIEGQFDS
                     SLSLGASWSMRGADRDLIGANNGGDGLSQTSDDAHLNFKKGETFSKIFKGIHDLELKY
                     GDTGVFLRGKYWYDFELKDESRLFKDIDDSNRKEGAQASGAQLLDAFVYHSYSIAGQP
                     GSVRLGKQVVSWGESTFIQNGINSINPIDVSAFRRPGAELKEGLIPVNMFYVSQSITD
                     NLSAEAFYQLEWDQTVVDNCGTFFAQADIVADGCTDNLRVLAPRSALPGIALGALAPF
                     GPNINEEGVLVPRGGDRDARDGGQWGTAVRYFFEPLDTEFGAYFMNYHSRTPFFSLTL
                     PEQATYDAITAGLPGPLAAVRPIAGAGAANYVLEYPEDIQLYGVSFSTTLPTGTAWQG
                     ELSYRPNAPVQLNSTDILYSGLTPMAGFGNVSVLQGTPGQDTTGYRRKEITQFQTTFT
                     HFFDQVMGAERLTLVGEVGVVHVGGLEHSSEARYGRDPIYGPGPLAGDRPSTAGPLFG
                     AGISSACVALNKGTLNNGAAAGASAENVDKYCEDDGFGTSTAWGYRMRAIWDYNNVFA
                     GVNLKPSVAWSHDVDGYGPNGLFTEGAKAVSLGLDAEYQNTYTASVSYTDFFGGDYNT
                     SIDRDFLAFSVGMSF"
     gene            complement(4760..5158)
                     /locus_tag="VLF16_07215"
     CDS             complement(4760..5158)
                     /locus_tag="VLF16_07215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003215625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSX70708.1"
                     /translation="MISHVFLGISDFERAYAFYAPLAAELGLSLKFRDPNKPWAAWML
                     PTAPRPLLVIGAPFDGQPSQAGNGQMLALLANDREGVRNAYAVALAHGGTDEGLPGLR
                     PQYHADFYGAYFRDPDGNKLCVCCHEAEAG"
     gene            complement(5436..>5736)
                     /locus_tag="VLF16_07220"
     CDS             complement(5436..>5736)
                     /locus_tag="VLF16_07220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSX70709.1"
                     /translation="LKGVRIDFEWSCAMGIVMNRIPQLGKLSQNIWYCQGYSGHGIAT
                     THIMGEIMANALTGTLGHYDTFAACKHIKVPLGDVFGNPMLAAGMWYYQMLEKLR"
BASE COUNT         1040 a         1777 c         1872 g         1047 t
ORIGIN      
        1 gtgtaacgct gcatcaggct ggccgcaaca tccggctggc cggccctgag cgcgtactcc
       61 agcgccgggc gcacctgctc gcggctgatg taccactggc aggccttgcg gaacagcgcc
      121 ttggtcatgc tgctcggcaa ctgctcggcc agtatcgccg ctacctccgg gcgcacgcat
      181 agcaggcggc cgtcctggct cagcgcctcg atgaacaggc caccctcacg caggcgctgc
      241 agcaacgtag ccccctcgcc tactccaagc agttgctcgc acagttcgcc atcgaaggaa
      301 ggaaactggg ccagggtgaa caggcccaac tgccagtcgc tgggcaagtc atcgagcacc
      361 tcgtgcttga ggtagtccag caacagcccg gcgttaccgt cggcggacaa cgcctgcccc
      421 ggcttcaggc cgagcaggcg caggcgcagg cctgcgcacc agccacgggt ctggcgcaac
      481 agatcgagta tctgccctcg cggccaggcg tggccggcac gctgcagcag ctccgtcagc
      541 tcgccctctg agaaggccag ttcaggggag cccagttcga acaggtcgcc gtccaacaac
      601 agacgcgcca gctgcatctg cggacggcgc cgactggtga tccaccagct cacctgtgcc
      661 gggctgtcca gcaccagggt gttgagcagc tcatcgagct cgtcggccgg catccgcggg
      721 tagtcgtcga acaccagcca cagcggctgc gtcaggtcat gcaggtggcg gtcgatggcc
      781 tcttcgtcgg catcggtcag accgagggcg gcgccgagtc gatcgagaaa gacctcgaca
      841 ccgatcggat gaccgcgcag gtcgagatgc acgacacgag tgcccgcggg cgcctggcgc
      901 agacactcgc tcagcagcac gctcttgccg ctaccggcgg gtgcgcaaag cagacgcagg
      961 cggcagtcgg cctccagcag ggcgtcacgc agacgtgggc gaggcagatg gccgggaggc
     1021 aggcgaggca ggtcgccatg gggcgatggg gccatgaaat cactcgggta tgggaaagcg
     1081 tgtttcatcc ttgcagagcc agtcggaggt gcgcaaatgc acggccaaaa aaaagcggcc
     1141 cacaaggggc cgccaagttc acggagtagc ctggagatcg atcaacgcac gccggcctga
     1201 cgcaacgccg ccggggtgta gttggaggca ctggccttgg caccgaactc gtagctctgc
     1261 ttttcctcgt tcttcaggcc gagtaccgag taacgaccgg agatcaggtc atacagagcc
     1321 tcggcggtat agccggggac ctgcttgtgg tagtactgct gagcatggcc ctcgccgaca
     1381 cgccacagct ggccacggcc gtcatagtga tctgccagtg ccagttgcca ggtgtcctcg
     1441 tcgaagtaca tgtggcgagt ggcgtagatg tggcgctcgc cctgcttgac cttggccacc
     1501 acttcccaga cgcggtgcag ctcgtagcgg gtcagatcct ggttgatgtg accggccttg
     1561 aggatgtcgg cgtacttcag cttcggcgag tccagcttgt agctgttgta ggggatgtac
     1621 atttcgcgct tgccgaccag ctgccagtcg tagcgatccg gcgagccgtt gaacatgtcg
     1681 tagttgtccg aggtagccag gccgtcggcg gcggtggccg gaccgtcata ggcgacctgc
     1741 ggagcacggc gcacacggcg ctggccagcg ttgtacagcc aggccatgcg cggctccttg
     1801 acctggtcga tggtctcgtg aaccagcagc acgttgccgg ccaggcgcgc cggcgcggtc
     1861 acgttctgga tgaagtagaa caggatgttg tcggccttgc tctggtcgag gtctggcagg
     1921 ttacccggat aggacacctc gtcggtgaac tcgaccatgt tgaacgcccc gttggcctgc
     1981 ggctgcacgc gggtcatgta gcgcttgatg ttaccgccgc ggtaacgggt ggtgtggttc
     2041 cacacgacct ccacgccact ctgcggaatc gggaaggcgt agtagcggct gtcgctgaag
     2101 cccttcagac cgttgccgcc atcgatgcct tcggtattca gcgcgctggt cttggccgcc
     2161 gcgtagatat cgtccggcag ggccgcactg cggtggctcg ggtataccgg gatcttgtag
     2221 gtgtccgggt agcgtttgaa catcgccagc tggccagcgg acagcttgtc cttgtactgc
     2281 tcggcgttgg ccgcggtgat ggtgaacagc ggttgctcgc tggcgaacgg gtcggcgagg
     2341 aagcccttgg cgtccactgc tccggcgtcg gtcggcaggc ctccggtcca ctcggggatg
     2401 ctgccgtcgg cgttgccggc cttctcggca ccgatcgggg tcaggctagt gccaagcttg
     2461 gccgcctctt ctggagagac cttggccatc acgctggtgg ccagcaggga cagcgccaga
     2521 gcgctggatt gcaggagaat acgtttcatc gtgtggttac ctttcttgtt ctgctgccga
     2581 actcagaagc tcatgccgac gctgaaggcc aggaagtccc ggtcgatcga ggtgttgtaa
     2641 tcgccaccga agaaatcggt gtaggagacg ctcgcggtgt aggtgttctg gtactcggca
     2701 tccaggccca ggctgacggc cttggcgcct tcggtgaaca ggccgttggg gccgtagcca
     2761 tcgacgtcat gcgaccaggc gacgctcggc ttgaggttca ctccggcgaa cacgttgttg
     2821 tagtcccaga tggcgcgcat gcggtaaccc caggcggtgc tggtaccgaa gccgtcgtcc
     2881 tcgcagtact tgtcgacgtt ctccgccgac gcaccggcgg ccgcgccatt gttcagcgtg
     2941 cctttgttca gagcgacgca ggcggaggag ataccggcgc cgaacagcgg acccgcggtg
     3001 ctcggacgat cgcccgccag cgggcctggt ccgtagatgg ggtcacgacc gtagcgagcc
     3061 tcggacgagt gctccagacc gccgacatgc acgacgccga cctcgccgac cagcgtcagg
     3121 cgttcggcgc ccatgacctg atcgaagaag tgggtgaaag tggtctggaa ctgggtgatc
     3181 tccttgcggc gatacccggt ggtgtcctgc cccggtgtgc cctgcagcac ggaaacgttg
     3241 ccgaagccgg ccatcggggt caggcccgaa tagaggatgt cggtggagtt cagctgcacc
     3301 ggagcattgg gccggtagct cagctcaccc tgccaggcgg tgccggtggg caaggtggtg
     3361 gagaagctca cgccgtagag ctggatgtct tccggatact ccagaacata attggccgca
     3421 ccggcaccgg ctatcggccg taccgccgcc agcggacccg gcaggccggc cgtgatggcg
     3481 tcgtatgtcg cctgctcggg caacgtcagg ctgaagaacg gcgtacggct gtggtaattc
     3541 atgaaatagg cgccgaactc ggtgtccagc ggttcgaaga agtaacgcac cgccgtgccc
     3601 cattgcccac cgtcgcgtgc gtcacggtcg ccaccacgcg gcaccagcac accttcctcg
     3661 ttgatgttcg ggccgaacgg cgcaagcgcg cccagcgcga tgcccggcag cgccgacctc
     3721 ggcgccagca ctcgcagatt gtcggtgcaa ccatcggcga cgatgtcggc ctgggcgaag
     3781 aaggtgccgc agttatccac cacggtctga tcccactcca gctggtagaa ggcctcggcg
     3841 gagaggttgt cggtgatgct ctgcgagacg tagaacatgt tgaccggaat cagaccttcc
     3901 ttgagttccg caccggggcg gcggaaggca gagacatcga tcgggttgat cgagttgata
     3961 ccgttctgga tgaaggtgct ctcaccccag ctcaccacct gcttgcccag gcgcacgctg
     4021 cccggctgcc cggcgatgct gtagctgtgg tagacgaagg catcgagcag ttgtgcaccg
     4081 gaggcctgcg caccttcctt gcgattggag tcatcgatgt ctttgaacag acgactctcg
     4141 tccttcagct cgaagtcata ccagtacttg ccgcgcagaa acacgccggt atcgccgtac
     4201 ttcagctcca ggtcatggat acccttgaag atcttcgaga aggtctcgcc cttcttgaag
     4261 ttcaaatgcg cgtcgtcgga ggtctgcgag agaccgtcgc cgccattgtt ggcgccgatc
     4321 aggtcgcggt cggcgccgcg catcgaccag ctggcgccga gggacagcga ggaatcgaac
     4381 tggccctcga tctcgccgat gttgaagccc actgcctgca cgttggccac gccgcccagt
     4441 gcgacagccg ccgcgagcag gctcaggccg aaaccattgc gccctttttt tcttgtaatc
     4501 attgggtaac ccctgtctgc gttgtcggac gggggcagaa gctaatcaat cgctactttt
     4561 gaggtaacgg atgaaagagt gatcctcgcg atcactacaa agagtgagtt cgctacagcg
     4621 gtctcggtta cgcaaaacgt cccaatgtca gcttccggcc ggatgcaggc gacgatgaca
     4681 ggcagccata acgaagcggg gaaccggcct ttccgcgctt tttttcttgc gaccaagcca
     4741 catctggatg gcctggactt cagcccgcct ccgcctcatg acaacagacg cataacttat
     4801 tgccatcggg atcgcggaaa taggcgccgt agaaatccgc gtggtactgc ggccgcaagc
     4861 ccggtaggcc ctcgtcagtg ccgccatgtg ccagggccac ggcataggcg ttgcgtaccc
     4921 cctcacggtc attggccaac aacgccaaca tctgtccatt ccccgcttga ctgggttggc
     4981 catcgaacgg ggcgccgatg acgagtagag ggcgtggcgc ggtcggcaac atccaggcag
     5041 cccagggctt attgggatcg cggaatttca gagaaaggcc cagctcggcg gcaaggggcg
     5101 cgtagaaggc gtaggcgcgc tcgaagtcgc taatgcccag aaacacgtgg gagatcatgg
     5161 cgattaccga attggctgca cgggattttg attctgctgg gaaagcctcc cagctggcta
     5221 ctcaccggtt cggctggcca aatcgcgcgc cgcgagccgg cgctcggaag cagcgtgtgg
     5281 ctcgaggaaa aaatgtcgct tccggccaaa agcgaaactt tcactgccgc tgccgcgcaa
     5341 cgccaaacgc acgcttcatc tggccaacgg cgatgtctga gaacgctcgg caagcgctct
     5401 cgaacgcaac aacatcgtgc cgctcgggct tcacctcagc gcagcttctc cagcatttgg
     5461 tagtaccaca tgccggcggc cagcatcggg ttgccgaaca cgtcgcccag cgggaccttg
     5521 atgtgtttgc aggcggcgaa agtgtcgtag tggccgaggg tgccggtcag ggcgttggcc
     5581 atgatctcgc ccatgatgtg ggtggtggcg atgccgtggc cggagtagcc ctggcagtac
     5641 cagatgttct gcgacagctt gcccagctgc gggatgcggt tcatcacgat gcccatggcg
     5701 cagctccact cgaagtcgat gcgcacgccc ttgagc
//
LOCUS       DATIHC010000446         1662 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_41052, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000446 DATIHC010000000
VERSION     DATIHC010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1662
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41052"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..825)
                     /locus_tag="VLF16_07225"
     CDS             complement(<1..825)
                     /locus_tag="VLF16_07225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013789661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015499 - formate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015724 - formate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HSX70710.1"
                     /translation="MSYLVPAEFASKMVDAGESKIYMSTRDTLIRALMAGAILSLAAV
                     FAVSITVQTGSPLVGAMLFPVGFVMLYLMGFDLLTGVFVLTPLALLDKRPGVTVGGVL
                     KNWGLVFCGNFAGALTVAFMMAFVFTMGFSTEPGAIGEKISHIGEARTLGYAEYGAAG
                     WLTIFLRGMLCNWMVSLGVVGAMISTTVSGKTIAMWMPIMLFFYMGFEHSVVNMFLFP
                     SAMIMGGDFSVMDYMLWNEIPTALGNLVGGLTFVGLTLYATHARTGAPRTGPALQQE"
     gene            complement(878..1228)
                     /gene="nirD"
                     /locus_tag="VLF16_07230"
     CDS             complement(878..1228)
                     /gene="nirD"
                     /locus_tag="VLF16_07230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019406290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008942 - nitrite reductase [NAD(P)H]
                     activity [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite reductase small subunit NirD"
                     /protein_id="HSX70711.1"
                     /translation="MNTALNLEAAWQPLCSAADLVANSGVVALAAGEQVALFYLPETE
                     QKVFAIGNRDPKSGANVIGRGIVGHLQGELVIASPLYKQHYRLNDGGCLEYPDQQLPV
                     WPVRLHGERVEILR"
     gene            complement(1228..>1662)
                     /locus_tag="VLF16_07235"
     CDS             complement(1228..>1662)
                     /locus_tag="VLF16_07235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003181651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite reductase (NAD(P)H)"
                     /protein_id="HSX70712.1"
                     /translation="LYVCGNGGMRPRHAELFATDLDDATLVRYIDRVLMFYIRTADKL
                     QRTSVWRESLEGGLDYLKDVVIHDSLGLNAELEAQMQLVVDRYECEWANALKDEEKLK
                     RFRTFVNEHGGDPDIHFVRERGQRRPARADELHLIPVTEETV"
BASE COUNT          286 a          520 c          591 g          265 t
ORIGIN      
        1 ctcctgctgc agggccggcc cggtgcgggg agccccggtg cgggcgtggg tggcgtacag
       61 ggtgagcccc acgaaggtca gcccgcccac caggttgccc agggcggtgg ggatctcgtt
      121 ccacagcatg tagtccatca ctgagaagtc gccgcccatg atcatcgccg aggggaacag
      181 gaacatgttc accaccgagt gctcgaagcc catgtagaag aacagcatga tcggcatcca
      241 catggcgatg gtcttgccgc tgacggtggt ggagatcatc gcgccgacca cgcccaggga
      301 caccatccag ttgcacagca tgccgcgcag gaagatggtc agccagccgg ccgcgccgta
      361 ctcggcatag cccagggtac gcgcctcgcc gatgtgcgag atcttctcgc cgatcgcgcc
      421 gggttcggtg gagaagccca tggtgaagac gaaggccatc atgaaggcca ccgtcagcgc
      481 gccggcgaag ttgccgcaga acaccaggcc ccagttcttc agcacgccgc cgacggtgac
      541 gccggggcgc ttgtccagca gggccagcgg ggtgagcacg aagaccccgg tgagcaggtc
      601 gaagcccatc aggtagagca tgacgaaacc gaccgggaag agcatcgcgc ccaccagcgg
      661 cgagccggtc tgcacggtga tgctgacggc gaacacggcg gcgagcgaga ggatggcgcc
      721 ggccatcaag gcgcggatca gggtgtcgcg ggtggacatg tagatcttcg attcgccggc
      781 atcgaccatc ttgctggcga actcggcggg gaccagatag gacatggcta ggttctcggt
      841 cgtagggata ggcgccgccc ggggcggcgc gatggactca gcggaggatt tccacccgct
      901 cgccgtgcag ccgcaccggc cataccggca gctgctggtc ggggtattcc agacagccgc
      961 cgtcgttcag ccggtagtgc tgcttgtaca gcggcgaggc gatcaccagc tcgccctgca
     1021 gatgaccgac gatgccgcgg ccgatgacat tggcgccgga cttggggtcg cggttgccga
     1081 tggcgaagac cttctgctcg gtctccggca ggtagaacag ggcgacctgc tcgccggcgg
     1141 ccagggcgac cacgccggag ttggccacca ggtcggcggc gctgcacagc ggttgccagg
     1201 cggcttcgag gttgagtgcg gtgttcatca gacggtctcc tcggtgacgg gaatcaggtg
     1261 cagttcatcg gcgcgggccg ggcggcgctg gccgcgttcg cggacgaagt ggatgtccgg
     1321 gtcgccgccg tgctcgttga cgaaggtgcg gaagcgcttg agcttctcct cgtccttcag
     1381 cgcgttggcc cattcgcatt cgtagcggtc gaccaccagc tgcatctgcg cttccagctc
     1441 ggcgttcagc cccaggctgt cgtggatgac cacgtccttg aggtagtcca ggccgccttc
     1501 cagcgactcg cgccacaccg aggtgcgctg cagtttgtcg gcggtgcgga tgtagaacat
     1561 cagcacgcgg tcgatgtagc gcaccagggt ggcgtcatcc aggtcggtgg cgaacagctc
     1621 ggcgtggcgc gggcgcatgc cgccgttgcc gcagacgtag ag
//
LOCUS       DATIHC010000447         1698 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31582, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000447 DATIHC010000000
VERSION     DATIHC010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1698)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1698)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1698
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31582"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..638
                     /locus_tag="VLF16_07240"
     CDS             <1..638
                     /locus_tag="VLF16_07240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003084371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSX70713.1"
                     /translation="LSGGQQQRIALARALASRPKVLLLDESLSALDMKLRKEMQIELK
                     RLQAETGITFIFVTHDQEEALTMSDRIAVMSKGRILQVGTPSEIYENPANRTVADFIG
                     ETNFLEAQAIGEQLQLADGQTLPSHCSAQGAVTLAIRPERVALSDSGNLAGEVEEVVY
                     IGTDTLYLLRVAGQSGFRVREQNGCGVRPLLQRGAPVRLDVPAAAIRVLSE"
     gene            635..1543
                     /locus_tag="VLF16_07245"
     CDS             635..1543
                     /locus_tag="VLF16_07245"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015479436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSX70714.1"
                     /translation="MSTPRQLAERRQLLRRLGLIAPGMAVLAVFLVAPLAIMLLVSFL
                     QPGEYGGVKWGEYSAEAYISFFYERDFDDNLVFNTDYLGIFQRSFWLAVATTAGCLLI
                     GFPTALYLALQSEKKRNLLLFLVTVPFWTNLLVRVYAWMLLLRNGGLVDGALGVFGVP
                     EGSVGLLYSSGAVMIGLLYSFLPFMVLPIYTSLEKLDWRLVEAAFDLGANRWQALKRV
                     ILPLALPGMLAGATLVFIPALGNYIIPELLGGGKALMIGNLVQLQFGSGHNWPLGAAL
                     AFSLFSLVLLALLFNGLRQRGQEVRA"
     gene            1540..>1698
                     /locus_tag="VLF16_07250"
     CDS             1540..>1698
                     /locus_tag="VLF16_07250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotC"
                     /protein_id="HSX70715.1"
                     /translation="MNLQGPLWRFTGVRPVAWAFFAFLYIPILVLVALSFNAGQSATL
                     WQGFSFKWY"
BASE COUNT          244 a          563 c          582 g          309 t
ORIGIN      
        1 agctctccgg cggccagcaa cagcgcatcg ccctggcccg ggctttggcc agccggccca
       61 aggtgctgct gctcgacgag tcgctgtccg cgctggacat gaagctgcgc aaggagatgc
      121 agatcgagct caagcgcctg caggccgaga ccggcatcac cttcatcttc gtcacccacg
      181 accaggaaga agcgctgacc atgtccgacc gcatcgcggt gatgagcaag ggacgcatcc
      241 tccaggtcgg cacgccgagc gagatctacg aaaacccggc gaaccgcacg gtggccgact
      301 tcatcggcga gaccaatttc ctcgaagccc aggccatcgg cgagcagctg cagctggccg
      361 acggccagac actgcccagc cattgctcgg cccagggcgc ggtgaccctg gccattcgcc
      421 ccgaacgggt ggcgctgagt gattcgggca acctggccgg cgaggtggag gaggtggtgt
      481 atatcggcac cgacaccctc tacctgctgc gagtcgccgg gcagtcgggc tttcgcgtac
      541 gcgaacagaa cggttgcggc gtgcgcccgc tgctgcagcg tggcgcgccg gtgcggctgg
      601 acgtaccggc cgcggccatc cgggtgctga gcgaatgagt acgccgcggc aactggccga
      661 gcgccgccag ctgctgcgcc gcctgggcct gatcgcgccg ggcatggcag tgctggcggt
      721 gttcctggtc gcgccgctgg cgatcatgct gctggtgtcc ttcctgcagc ccggcgagta
      781 cggcggggtg aagtggggcg aatactcggc cgaggcctac atcagcttct tctacgagcg
      841 cgacttcgac gacaacctgg tgttcaacac cgattacctc ggcatcttcc agcgctcctt
      901 ctggctggcc gtggcgacca ccgccggctg cctgctgatc ggttttccca ccgcgctgta
      961 cctggccctg cagagcgaga agaagcgcaa cctgctgctg ttcctggtca ccgtgccgtt
     1021 ctggaccaac ctgctggtgc gggtctacgc ctggatgctg ctgctgcgca acggcggcct
     1081 ggtggacggc gcgctgggcg tgttcggcgt gcccgagggc agcgtcggcc tgctgtacag
     1141 cagcggcgcg gtgatgatcg gtctgctcta cagtttcctg ccgttcatgg tgctgccgat
     1201 ctataccagc ctggagaagc tcgactggcg cctggtggag gcggccttcg atctcggcgc
     1261 caaccgctgg caggcgctga agcgggtgat cctgccgctg gcgctgccgg gcatgctggc
     1321 cggcgcgact ttggtgttca tcccggcgct gggcaactac atcattcccg agctgctcgg
     1381 cggcggtaag gcgctgatga tcggcaactt ggtgcagctg cagttcggct ccgggcacaa
     1441 ctggccgctg ggtgcggcgc tggccttctc gctgttcagc ctggtgctgc tggccctgct
     1501 gttcaacggc ctgcgccagc gcggccagga ggtgcgcgca tgaacctgca gggcccgctg
     1561 tggcgcttca ccggcgtgcg gccggtggcc tgggcgttct tcgccttcct ctacatcccg
     1621 atcctggtac tggtggcgct gagcttcaac gccggccagt cggccaccct gtggcagggg
     1681 ttcagcttca agtggtac
//
LOCUS       DATIHC010000448         3707 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43277, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000448 DATIHC010000000
VERSION     DATIHC010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3707
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43277"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            129..1301
                     /locus_tag="VLF16_07255"
     CDS             129..1301
                     /locus_tag="VLF16_07255"
                     /inference="COORDINATES: protein motif:HMM:NF012588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA reductase"
                     /protein_id="HSX70716.1"
                     /translation="MSRGAPIPRNSADDYSAEQAGARRDFVKEQTGAALDTVGRYAID
                     PQVTRGNIENFIGVVQMPLGLAGPLRIEGEHAQGDFYVPMATTAGTLVASYSRGMRAI
                     STSGGVRTTVVKHSMQRAPVFLFENALQAREFGAWLVSEFEAIKAASETTTRSGKLFE
                     IEQYPVANMLYTRFCYTTGDAAGQNMTSKATYAACEWIKANHPLQPRYILSGALDTDK
                     KHSAMNMIQTRGKRVIAEFTLKREVAHELLRVDPANLYRYRQIAAVGAFQSGSAYSGA
                     HSANGLAAVYIATGQDAANVAESHGGITYGQLLDNGDYYWSVTLPAVICATHGGGTGL
                     PTQRECLEMLGCYGAGKADKLAEIIAAVVLAGDVSLTSAILAGDWVSSHEALGRNR"
     gene            complement(1379..1831)
                     /locus_tag="VLF16_07260"
     CDS             complement(1379..1831)
                     /locus_tag="VLF16_07260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010489402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rid family hydrolase"
                     /protein_id="HSX70717.1"
                     /translation="MANPSKIPAKKTASFGVAWEGLYGYVQAVQVKDTIYLSGQLSHD
                     RAGNLIAPAELNQDGQPADFSTMEAQMRQTYRNIVELLAEFGASLDHVVEETLFVIDV
                     PAAFAAAGTVRKEFYGAEVPQVASNLIGVSGLAFPQQLIEITIRAVVE"
     gene            complement(2054..2683)
                     /gene="ycaC"
                     /locus_tag="VLF16_07265"
     CDS             complement(2054..2683)
                     /gene="ycaC"
                     /locus_tag="VLF16_07265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003253564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate family cysteine hydrolase YcaC"
                     /protein_id="HSX70718.1"
                     /translation="MTNATYNRLDKDNAVVLLVDHQAGLLSLVRDIEPDKFKNNVLAL
                     ADLAKFFNLPTILTTSFETGPNGPLVPELKEMFPDAPYIARPGQINAWDNEDFVKAIK
                     ATGKKQLIIAGVVTEVCVAFPALSAIEEGFDVFVVTDASGTFNQITRDSAWSRMTQAG
                     AQLMNWFAVACELHRDWRNDVEGLAKICSDHIPDYRNLITSYSALTAGK"
     gene            2841..>3707
                     /locus_tag="VLF16_07270"
     CDS             2841..>3707
                     /locus_tag="VLF16_07270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013974761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HSX70719.1"
                     /translation="MEDLNSLYYFTQVVEHGGFAPAGRALDMPKSKLSRRIAQLEERL
                     GVRLLHRTSRHLSLTEIGQAYYQRCLAMRVEAEGAAEVIERNRAEPRGLVRLACPTTL
                     LNSWVGPMLTRYMLKYPLVELYIESTNRRVDLLHEGFDVALRVRFPPLENTDMVMKVL
                     AASTQCLVGHPDLLASLPKDFQPEELGRLPSLHWGGAQRDYQWELLGPDDGKLVIAHQ
                     PRMITDDLRALRNGALAGVGIVHLPCVAVREDVAAGKLVEMLPGWAPKCGIVHAIFPS
                     RRGLLPSVRTLID"
BASE COUNT          621 a         1228 c         1232 g          626 t
ORIGIN      
        1 accggtccgc agccgccatc gccgcgaaaa gacgcgctgg gtcacgtgga tggcgtggtc
       61 gggcatgccg gtagcatcgc cgttgtgcac actcagaggc tctccccttc cgaccacagg
      121 aaatcaccat gtccagaggc gccccgattc cccgcaactc cgccgacgac tactccgccg
      181 agcaggccgg cgcacgccgc gacttcgtca aggaacagac cggcgccgcg ctggacacgg
      241 tgggccggta cgccatcgac ccgcaggtga cccgcggcaa catcgagaac ttcatcggcg
      301 tggtgcagat gccgctgggc ctggccggcc cgctgcgcat cgagggcgag catgcgcaag
      361 gtgacttcta cgtgccgatg gccaccaccg cgggcaccct ggtggccagc tacagccgcg
      421 gcatgcgcgc catcagcacc tccggcggcg tgcgcaccac cgtggtcaag cactccatgc
      481 agcgcgcccc ggtgttcctg ttcgagaacg cgctgcaggc ccgcgagttc ggcgcctggc
      541 tggtcagcga attcgaagcg atcaaggcgg ccagcgagac caccacccgc agcggcaagc
      601 tgttcgagat cgagcagtac ccggtggcca acatgctcta cacgcgcttc tgctacacca
      661 ccggcgatgc cgccgggcag aacatgacca gcaaggccac ctacgcggcc tgcgaatgga
      721 tcaaggccaa ccacccgctg cagccgcgct acatcctgtc cggcgccctc gacaccgaca
      781 agaagcattc ggcgatgaac atgatccaga cccgcggcaa gcgggtgatc gccgagttca
      841 ccctcaagcg cgaggtggca cacgagctgc tgcgcgtcga ccccgccaac ctctaccgct
      901 accggcagat cgccgcggtc ggcgccttcc agtccggctc cgcctacagc ggcgcgcact
      961 cggcgaacgg gctggcggcc gtgtacatcg ccaccggcca ggacgcggcc aacgtggccg
     1021 agtcccacgg cggcatcacc tacgggcagt tgctggacaa cggcgactac tactggtcgg
     1081 tgaccctgcc ggcggtgatc tgcgccaccc acggcggcgg caccggcctg ccgacccagc
     1141 gcgaatgcct ggagatgctc ggctgctacg gcgccggcaa ggccgacaag ctggccgaga
     1201 tcatcgccgc ggtggtgctg gcgggcgatg tttccctgac ctcggcgatc ctcgccggcg
     1261 actgggtcag cagccacgag gcgctggggc gcaatcgctg aaagcagccc gccgaaaacg
     1321 ccataagccg gtcatcccgg cttatggcgt tctctgcgtc gaggggcccg agcgggcgtc
     1381 actccaccac ggcgcgaatg gtgatctcga tgagctgctg cggaaacgcc aggcccgaca
     1441 cgccgatgag gttgctggcg acctgcggca cttcggcgcc gtagaactcc ttgcgtaccg
     1501 tgccggccgc ggcgaaggcc gccggcacgt cgatgacgaa cagcgtttcc tcgaccacgt
     1561 gatccaggct cgcaccgaac tccgccagca gctcgacgat gttccggtag gtctggcgca
     1621 tctgcgcctc catcgtggag aagtcggcgg gctggccgtc ctggttcagc tcggcgggcg
     1681 caatgaggtt gccggcgcgg tcatggctca gctgcccgga gaggtagata gtgtccttga
     1741 cctgaacggc ctgcacgtaa ccgtacagtc cctcccaggc gacgccgaaa ctggcggttt
     1801 tctttgctgg aatcttgctt gggttggcca tcacacaggc tccgaatgag gaagtggctt
     1861 cgcgctcgag gcgagttctc ggggtcatcg ggatgatgac ccggagcgcg aaagcagact
     1921 tgtaccgctg tgctcgatgt cgtctcgagc ccagcttttc caatgagtac gccgagcgcg
     1981 tgtgcgccgg ctttcagcaa tctgggggct caccggagcc cgattcaggc tccggtgagg
     2041 caccgcgggt ggatcacttg ccggcggtca gcgcgctgta gctggtgatc aggttgcggt
     2101 agtccgggat gtggtcggag caaatcttgg ccaggccttc cacgtcgttg cgccagtcgc
     2161 ggtgcagctc gcaggccacg gcgaaccagt tcatcagctg cgcgccggcc tgggtcatgc
     2221 ggctccaggc cgaatcacgg gtgatctggt tgaaggtgcc cgaggcgtcg gtgacgacga
     2281 acacgtcgaa gccctcttcg atggccgaca gcgccgggaa cgccacgcac acctcggtca
     2341 ctacgccggc gatgatcagc tgcttcttgc cggtggcctt gatcgccttg acgaagtcct
     2401 cgttgtccca ggcgttgatc tggccggggc gggcgatgta gggcgcatca gggaacatct
     2461 ccttgagctc cggcaccagc gggccgttgg ggccggtctc gaagctggtg gtgaggatgg
     2521 tcggcagatt gaagaacttg gcgaggtcgg ccagggccag gacgttgttc ttgaacttgt
     2581 ccggctcgat gtcgcgaacc agggacagca ggccggcctg gtggtcgacc agcagaacga
     2641 cggcgttgtc tttgtccagg cggttgtagg tggcgttggt catggtgaag tcctcgattt
     2701 gttttcaatg gtggccggcg gtgccggtga gtcggtcttg ttttgcagtg cgtcactgca
     2761 tggaagaaag attaaattcg agtcctttga cgcgctagac tgctaaaatt gcctttagcg
     2821 ttctatttgg agaacgatcc atggaagacc tcaacagcct ctactacttc acccaggtgg
     2881 tggagcacgg cggcttcgcc cccgcggggc gcgcgctgga catgcccaag tccaagctca
     2941 gccggcgcat tgcccagctc gaggagcgcc tcggcgtgcg cctgctgcac cgcaccagcc
     3001 ggcacctgtc gctcaccgag atcggccagg cctattacca gcgctgcctg gccatgcgcg
     3061 tggaggccga gggcgcggca gaggtgatcg aacgcaaccg cgccgagccg cgcggcctgg
     3121 tgcgcctggc ctgccccacc acgctgctga attcctgggt cgggccgatg ctgacccgct
     3181 acatgctcaa gtacccgctg gtggagctgt acatcgagag caccaaccgc cgggtggatc
     3241 tgctgcatga aggcttcgac gtagccttgc gggtgcgttt tcccccgctg gaaaacaccg
     3301 acatggtgat gaaggtgctc gccgccagca cccaatgcct ggtcggtcac ccggatctgc
     3361 tggcctcgct gccgaaggat ttccagcccg aggagctggg ccgcctgccg agcctgcact
     3421 ggggcggcgc gcagcgcgac taccagtggg agctgctcgg cccggacgat ggcaagctgg
     3481 tgatcgcgca ccagccgcgg atgatcaccg atgacctgcg cgccctgcgc aatggcgcgc
     3541 tggccggcgt gggtatcgtc cacctgccct gtgtagcagt gcgcgaagac gtggcggccg
     3601 gcaagctggt ggagatgctg ccgggctggg cgccgaagtg cggcatcgtc cacgccatct
     3661 tcccctcgcg ccgcggcctg ctgccctcgg tgcgcaccct gatcgac
//
LOCUS       DATIHC010000449         2535 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12870, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000449 DATIHC010000000
VERSION     DATIHC010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2535
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12870"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..411
                     /locus_tag="VLF16_07275"
     CDS             <1..411
                     /locus_tag="VLF16_07275"
                     /inference="COORDINATES: protein motif:HMM:NF017868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylcyclotransferase family protein"
                     /protein_id="HSX70720.1"
                     /translation="RMQARGLVVEEMMAARLPGYALSFNKRALDQPGRAYANIRHQAG
                     GVVEGVLYRLADEREILKLDVFEGTPINYSRERMRVETERGAICAWLYIANPAWRSDG
                     LAPSSGYLGHLLAGRELLSADYWAALAATVALAD"
     gene            complement(369..1775)
                     /locus_tag="VLF16_07280"
     CDS             complement(369..1775)
                     /locus_tag="VLF16_07280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008057924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HSX70721.1"
                     /translation="MPALSRSARAMAELRALLALATPIIIAQLAHTAMGFVDAVMAGR
                     VGARDLAAVALGNSLWVPVYLLMTGLLLATTPKVAQRFGAGQHAEIGPLVRQALWLGL
                     AIGCLAGLALWHATPVLRLMQVEPALTDMSMRYLQGIAVGFPAVAIYQVLRCFSDGLG
                     HTRPTMVIGIAGLLLNIPLNYVLIYGHLGLPALGGVGCGWASGIVMWAMLLALLWWVR
                     RAPYYRASQLFVRFDRPQWPVIRRLLSIGVPIGVSIFAEASIFSVIALLIGGLGATVV
                     AGHQIALNFSSLVFMIPYSLGMAATVRVGQALGRSQPREARFAAGVAMGTALGYACLS
                     ASLMFALRHEIAQIYTSAPEVIVIAGGLIVYSALFQFSDAIQVTAAGALRGYQDTRAT
                     MVFTLFAYWGIGLPVGYALGLSDLFGEPSGPKGLWQGLVVGLTCAAVLLGIRLQRSAR
                     RQIRIQSASATVAASAAQ"
     gene            1920..>2535
                     /locus_tag="VLF16_07285"
     CDS             1920..>2535
                     /locus_tag="VLF16_07285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HSX70722.1"
                     /translation="MQIVADENIPLLDEFFSAFGPIRRHPGRAIDRATLGDAEVLLVR
                     SVTRVDRALLEGSQVRFVGTCTIGTDHFDLDYFAEAGIAWSSAPGCNARGVVDYVLGC
                     LLALAERSAARLAERCYGVVGAGQVGGRLVEVMRGLGWNVRVCDPPRQAAEGGDFVDL
                     QTILRECDVISLHTPLDTGTRHLLGADQLRALQPGAWLINASRGA"
BASE COUNT          403 a          886 c          922 g          324 t
ORIGIN      
        1 cgcatgcagg cccgcgggct ggtggtggag gagatgatgg ccgcgcgtct gccgggctac
       61 gccctgagct tcaacaagcg cgccctcgac cagcccggtc gcgcctacgc caacatccgc
      121 catcaggccg gcggcgtggt ggagggcgtg ctgtaccggc tggcggacga acgcgagatc
      181 ctcaagctgg acgtgttcga aggcacgccc atcaactaca gccgcgagcg catgcgcgtc
      241 gagaccgagc gcggcgccat ctgcgcctgg ctctatatcg ccaatccggc ctggcgcagc
      301 gacgggctgg cgcccagcag cggctacctg ggccatctgc tggccgggcg cgagttgttg
      361 tccgcggact actgggcggc gctggccgcc accgtcgcac tggccgactg aatgcggatc
      421 tgccggcgcg cgctgcgctg caggcggatg ccgagcagca cggcggcgca ggtcaggccg
      481 accaccaggc cctgccacag gcccttcggc ccggagggct cgccgaacag gtcgctcagg
      541 cccagggcat accccaccgg caggccgatg ccccagtagg cgaacagggt gaagaccatg
      601 gtcgcgcggg tgtcctgata gccgcgcagg gcgccggcgg cggtgacctg gatggcgtcg
      661 gagaactgga acagcgcgga gtagacgatc agcccgccgg cgatgacgat cacctccggg
      721 gccgaggtgt agatctgcgc aatctcgtgg cgcagcgcga acatcaggct cgccgacaga
      781 caggcgtagc ccagcgccgt gcccatcgcc acgcccgcgg cgaagcgcgc ctcgcgcggc
      841 tgactgcggc ccagcgcctg gccgacgcgc acggtggcgg ccatgcccag cgagtaaggg
      901 atcatgaaca ccagcgagct gaagttcagg gcgatctggt ggccggccac caccgtggcg
      961 cccaggccgc cgatcagcag ggcgatgacc gagaagatgc tcgcctcggc gaagatcgac
     1021 acgccgatcg gcacgccgat cgacagcagg cgccggatca ccggccactg cggccggtcg
     1081 aaacggacga acagctggct ggcccgatag tagggcgcgc gccgcaccca ccacagcagg
     1141 gccagcagca tggcccacat gacgatgccg ctggcccagc cgcagccgac gccgcccagc
     1201 gccggcaggc cgaggtggcc gtagatcagc acgtagttga gcgggatgtt cagcagcagg
     1261 ccggcgatgc cgatgaccat ggtcggccgg gtgtggccca ggccgtcgct gaagcagcgc
     1321 agcacctggt agatggccac cgcgggaaaa ccgacggcga tgccctgcag gtagcgcatg
     1381 gacatgtcgg tcagcgccgg ctccacctgc atcaggcgca gcaccggcgt ggcatgccac
     1441 agggccaggc cggccaggca gccgatggcc aggcccagcc acagggcctg gcgcaccagc
     1501 gggccgatct ccgcgtgctg gccggcgccg aaacgctgcg ccaccttggg cgtggtggcc
     1561 agcagcagcc cggtcatcag caggtacacc ggcacccaca gcgagttgcc cagggccacg
     1621 gcggccaggt cgcgggcgcc gacacggccg gccatcacgg cgtcgacgaa gcccatggcg
     1681 gtgtgcgcca gctgggcaat gatgatgggt gtcgccaggg ccagcagggc gcgcaattcg
     1741 gccatggctc gggcggaacg ggagagggcg ggcatggagg gtccggcggg aggagcgatg
     1801 aggcgcgcta gtctagccct gtcctcccgg tcagaaaagt gcttgcgcgt ggtcgcatgc
     1861 cggccgcgac gaaacccggg cggcgccctt agaatggccg ctcgtgattg gagtgcccca
     1921 tgcagatagt cgccgacgaa aacatcccgc tgctcgacga gttcttctcc gccttcggcc
     1981 cgatccgccg tcatcccggc cgcgccatcg accgcgccac gctgggcgac gccgaggtgc
     2041 tgctggtgcg ctcggtgacc cgcgtcgacc gcgcgctgct cgagggcagc caggtgcgct
     2101 tcgtcggcac ttgcaccatc ggcaccgacc atttcgacct ggactacttc gccgaggccg
     2161 gcatcgcttg gtccagcgcc cccggctgca acgcccgcgg cgtggtggat tacgtgctgg
     2221 gctgcctgct ggcgctggcc gagcgcagcg ctgcgcggct ggccgagcgc tgctatggcg
     2281 tggtcggcgc cggccaggtc ggcgggcgcc tggtcgaggt gatgcgtggc ctgggctgga
     2341 acgtacgggt ctgcgatccg ccgcgccagg ccgccgaggg cggcgacttc gtcgacctgc
     2401 agaccatcct gcgcgagtgc gacgtgatca gcctgcacac gccgctggat accggcaccc
     2461 gccacctgct gggcgccgat cagttgcgcg cgctgcagcc cggcgcctgg ctgatcaacg
     2521 ccagtcgcgg cgcgg
//
LOCUS       DATIHC010000450         1918 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17029, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000450 DATIHC010000000
VERSION     DATIHC010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1918)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1918)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1918
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17029"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..380
                     /gene="azu"
                     /locus_tag="VLF16_07290"
     CDS             <1..380
                     /gene="azu"
                     /locus_tag="VLF16_07290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004423272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="azurin"
                     /protein_id="HSX70723.1"
                     /translation="VEVKSTDQMTFETKSIDVSKSCKTFTVTLKHTGTMPKTAMGHNW
                     VLSKTADAQPVATDGIAAGLDNDYIKPGDTRVIAHTKIIGGGETATTSFDVAKLEAGT
                     PYEFFCSFPGHIGLMKGELKLID"
     gene            complement(414..1289)
                     /locus_tag="VLF16_07295"
     CDS             complement(414..1289)
                     /locus_tag="VLF16_07295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013789936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HSX70724.1"
                     /translation="MTVAPHHARLLRRATAAALVTALLLATAKAVAWWLSGSVSLLAG
                     LTDSLLDGAASLLNLIAVHYALRPADEDHRYGHGKAEALAGLGQALFVGASAVLVGLQ
                     ALERLRHPEPLGAQALGIAVMLLSLAATLALLLFQRHVVRLTGSTAVRADSLHYRSDL
                     LLNASILLALVLATFGWQRQDAVFGLGIALYILWSAVSIVREAVAVLMDEELAPDVSE
                     RMHALACAVPGVLGAHDLRTRISGTRWFVQLHLELPGELSLREAHERCVAVERAIRGE
                     YPRAEVLVHADPRPA"
     gene            complement(1286..1792)
                     /locus_tag="VLF16_07300"
     CDS             complement(1286..1792)
                     /locus_tag="VLF16_07300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017521767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HSX70725.1"
                     /translation="MIPTLATHLQRLIAYHGWAYDRLLGELASLTEEQYRAPCGLFFG
                     SIHGSLNHLAVVDRIWLARVCGEPSTYTRLDDEAVSERAGFDAFFAIGVAAWHERLDG
                     LDEAELLAPIDYRNMAGEPHTRTLLDIVTHLVNHGTHHRGQITAALTALGRPASVLDY
                     LYALPELP"
     gene            complement(1792..>1918)
                     /locus_tag="VLF16_07305"
     CDS             complement(1792..>1918)
                     /locus_tag="VLF16_07305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014854072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HSX70726.1"
                     /translation="LKLKAILYRELGRDLPLDDPRLIQHSGNIEQLAAYGLRAEA"
BASE COUNT          328 a          658 c          668 g          264 t
ORIGIN      
        1 cggtggaggt caagtccacc gaccagatga cgttcgagac caagtcgatc gatgtcagca
       61 agagctgcaa gaccttcacc gtgaccctca agcacaccgg caccatgccc aagacggcca
      121 tgggccacaa ctgggtactg agcaagaccg ccgacgctca gcccgtggcc accgacggca
      181 tcgccgccgg cctggacaac gactacatca aacccggcga tacccgcgtc atcgcccaca
      241 ccaagatcat cggcggcggc gaaaccgcca ccaccagctt tgatgtcgcc aagctggaag
      301 ccggtacgcc ctacgagttc ttctgctcct tccccggcca catcggcctg atgaagggcg
      361 agctcaagct gatcgattga tccccaccgg cccggcgctc gccgggccat tcttcacgcc
      421 ggtctgggat cggcgtgtac cagcacctcg gcccgcggat actcgccgcg gatcgcccgc
      481 tccaccgcca cgcaccgttc atgcgcctcg cgcagcgaca gctcgccggg taactccaga
      541 tgcagctgca cgaaccagcg ggtgccggat atgcgcgtgc gcaggtcgtg ggcgccgagc
      601 acgcccggca cggcgcaggc cagcgcgtgc atgcgctcgc tgacatccgg cgccagctct
      661 tcgtccatca gcaccgccac cgcctcgcgc acgatgctca ccgcgctcca caggatgtag
      721 agggcgatgc ccaggccgaa cacggcgtcc tggcgttgcc agccgaaggt cgccagcacc
      781 agggcgagca ggatgctggc attgagtagc aggtcggagc ggtagtgcag cgagtcggcg
      841 cgtaccgcag tggagccggt gagccgcacc acgtggcgct ggaacaacag caaagcgagg
      901 gtcgcggcca gcgacagcag catgactgcg atgcccagtg cctgggcgcc gagcggttcg
      961 ggatggcgca gccgctccag cgcctgcaag cccaccagca ccgcgctggc gccgacgaac
     1021 agcgcctggc ccagcccggc cagcgcctcg gccttgccgt gaccgtagcg gtggtcctcg
     1081 tcggccgggc gcagcgcgta atgcacggcg atcagattga gcagcgaggc ggcgccatcg
     1141 agcagcgagt cggtgaggcc ggcgagcagg ctgaccgagc cgctcagcca ccaggccacg
     1201 gccttggcgg tcgccagcag cagcgcggtg accagcgccg cggccgtggc ccggcgcagc
     1261 agacgggcat ggtgcggcgc cacggtcatg gcagttcggg cagggcgtag aggtagtcga
     1321 gtactgacgc cgggcggccg agggcggtca gcgccgcggt gatctggcca cggtggtggg
     1381 tgccgtggtt gaccaggtgg gtgacgatgt cgagcagggt tcgcgtgtgc ggctcgccgg
     1441 ccatgttgcg gtagtcgatg ggggccagca gctcggcctc gtcgaggccg tcgagacgct
     1501 catgccaggc cgccacgccg atggcgaaga aggcgtcgaa accggcccgc tcgctcaccg
     1561 cctcgtcatc caggcgggtg taggtgctgg gctcgccaca gacccgcgcc agccagatgc
     1621 gatcgaccac cgccaggtgg ttgaggctgc cgtggatgct gccgaagaac aacccgcacg
     1681 gcgcgcgata ctgctcttcg gtcaggctcg ccagctcgcc gagcagccgg tcgtaggccc
     1741 aaccgtggta ggcgatcagg cgctgcaggt gagtggcgag ggtcgggatc atcaggcttc
     1801 cgcgcgcagg ccgtaggccg ccagttgctc gatgttgcca ctgtgctgga tcaggcgcgg
     1861 gtcgtccagc ggcaggtcgc ggcccagctc gcggtagagg atggccttga gcttgagc
//
LOCUS       DATIHC010000451         1940 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12882, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000451 DATIHC010000000
VERSION     DATIHC010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1940
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12882"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..290
                     /locus_tag="VLF16_07310"
     CDS             <1..290
                     /locus_tag="VLF16_07310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008366305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pilin assembly protein"
                     /protein_id="HSX70727.1"
                     /translation="PSQYHIHLDLESAARLAALCEMYPRRGTEEMLGELIGAALEELE
                     ASLPYIKGNKVVATDEQGDPLYEDIGPTPRFLALSRKYLQQMSEPLDKTQH"
     gene            470..844
                     /locus_tag="VLF16_07315"
     CDS             470..844
                     /locus_tag="VLF16_07315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017675097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4398 domain-containing protein"
                     /protein_id="HSX70728.1"
                     /translation="MKTRTLLLTLTLGGSLALAGCAGNPPSEQLASASAVIKSAEAAG
                     GPEFAPADMKAAKDKMSQAQVLMQDQQYEQARRLIEQAEADARVAERRALAGKAQRSL
                     DDAHQGVQQIREEGSRTPIIVQ"
     gene            861..1649
                     /locus_tag="VLF16_07320"
     CDS             861..1649
                     /locus_tag="VLF16_07320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003292875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HSX70729.1"
                     /translation="MNRMTHLFSLSALALVLAGCAHDPNPNLEQARSGYAELQANPEA
                     QTLAGVETKEAGDMLNRANHAYDAGHGSVEVDHLAYLTNRRIDVAKETILQKNAEEAL
                     EAAPAQRTQAQLAARNQQLDALLQHLQAQETERGSVVTLGDVLFEVDRSELTASGMQN
                     VQQLADYLLQNKDRQVVVEGFTDSTGSRDYNLRLSQARADSVRSALVARGVDPRRITA
                     HGFGQDYPVASNDTASSRTLNRRVEVTISHSSAPVAPRVLAPAM"
     gene            complement(1689..>1940)
                     /locus_tag="VLF16_07325"
     CDS             complement(1689..>1940)
                     /locus_tag="VLF16_07325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003163253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macro domain-containing protein"
                     /protein_id="HSX70730.1"
                     /translation="DQGEPELLAACYRNSLALAESADCASIAFPAISCGVYGYPLDAA
                     AQIAVTELSRPRAGGSLRRALLVAFSADMAERYRHLLQA"
BASE COUNT          371 a          682 c          622 g          265 t
ORIGIN      
        1 ccccgagcca gtaccacatc cacctggacc tggagtccgc ggcgcgcctg gcggcgctgt
       61 gcgagatgta ccccaggcgc ggtaccgagg aaatgctcgg agagctgatc ggcgccgcgc
      121 tggaagagct ggaggccagc ctgccctaca tcaagggcaa caaggtcgtg gccaccgacg
      181 aacagggtga cccgctgtac gaggacattg gccccacgcc gcgcttcctc gccctgtcac
      241 gcaagtatct gcagcagatg agcgagccgc tggacaagac ccagcactga tgcagcccgc
      301 cgcagccaag gccccatagg ggcctttttc atgcccggga aaaatcctga acattctttt
      361 cgaagcggca gtcccacctc taggccggca tgacctgtgg cgattttcgc ccatcgacgg
      421 acattcggcg gacaacttgt tccgatggat ttgcatggag cccaatccca tgaagacgag
      481 aacactgcta ctgaccctca ccctcggcgg cagcctggcg ctggccggct gcgccggcaa
      541 cccgccctcc gagcaactgg cctccgccag cgcggtgatc aagagcgccg aagccgccgg
      601 cggccccgag ttcgccccgg ccgacatgaa ggccgcgaag gacaagatga gccaggccca
      661 ggtgctgatg caggaccagc aatacgagca ggcccgccgc ctgatcgagc aggccgaggc
      721 cgatgcccgg gtggccgagc gccgcgccct ggcgggcaag gcccagcgca gcctggacga
      781 cgcccaccag ggcgtgcagc agatccgcga ggaaggctcg cgcaccccga tcatcgtgca
      841 gtgacatgga ggagcgacgc atgaatcgca tgacccacct gttttccctc tccgccctgg
      901 cgctggtact ggccggttgc gcccatgacc cgaacccgaa cctggaacag gctcgctccg
      961 gctatgccga actgcaggcc aaccccgagg cgcaaaccct ggccggcgtc gaaaccaaag
     1021 aagccggcga catgctcaac cgcgccaacc acgcctacga tgcggggcac ggcagtgtcg
     1081 aggtcgatca cctggcctat ctgaccaacc gccgcatcga cgtggccaag gaaaccatcc
     1141 tgcagaagaa tgccgaagag gcgctcgaag cggctccggc acagcgcacc caggcccagc
     1201 tggcggcgcg caaccagcag ctggatgccc tgctgcaaca tctgcaggcc caggagaccg
     1261 agcgtggctc ggtggtgacc ctgggtgacg tgctgttcga ggtggaccgc tccgagctga
     1321 ccgcctcggg catgcagaac gtccagcaac tggccgacta cctgctgcag aacaaggatc
     1381 gtcaggtcgt ggtggaagga ttcaccgaca gcaccggcag ccgcgactac aacctgcgcc
     1441 tgtcccaggc ccgtgccgac tcggtgcgca gcgccctggt ggcccgtggc gtcgacccgc
     1501 gtcgcatcac cgcccatggc ttcggccagg actacccggt ggcgagcaac gacacggcca
     1561 gttcgcgcac gctcaaccgt cgcgtcgaag tgaccatctc ccatagctcg gccccggtgg
     1621 ccccgcgggt gctggcaccg gcgatgtaaa tcggcggcac cgaaaaagcc ccgcttcgcg
     1681 gggctttttc atgcctgcaa caaatgtcgg tagcgctcgg ccatgtccgc ggagaacgcc
     1741 accagcagcg cgcggcgcag gctgccaccc gcccgtgggc gcgacagctc ggtgaccgcg
     1801 atctgcgcgg cggcatcgag ggggtatccg tagacgccgc agctgatggc gggaaaggcg
     1861 atgctggcgc aatcggccga ctcggccagc gccaggctgt tgcggtagca cgcggcgagc
     1921 agttccggct cgccctgatc
//
LOCUS       DATIHC010000452         1808 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8310, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000452 DATIHC010000000
VERSION     DATIHC010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1808
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8310"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..490)
                     /locus_tag="VLF16_07330"
     CDS             complement(<1..490)
                     /locus_tag="VLF16_07330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OprD family outer membrane porin"
                     /protein_id="HSX70731.1"
                     /translation="MSKSPLARSVALAALGTSLTLPTVSQAAFIEDSKASVEARNFYM
                     NRDFRQEGAAQSKAEEWAQGFLLRFESGYTEGTVGFGVDAIGTLGLKLDSSPSESGTQ
                     LLQRDRETGRAQDDYGDLGVTAKVKVSKSVLKAGTLMPKLPVVQANDSRLLPQSFQGG
                     WIN"
     gene            complement(597..1172)
                     /locus_tag="VLF16_07335"
     CDS             complement(597..1172)
                     /locus_tag="VLF16_07335"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSX70732.1"
                     /translation="MRATRPAAIERSAGSPRAQQSLGHNHWDHAQAWADFAEVPVWAP
                     YKEIEFSRIATPPAVLPSQFAHAIRWVPLQFDEQPLLGFERSHDLFGDGSLAREPMAG
                     RPPGSVGLFLALDDGRRFFFTGDTGAWRGSPGRRRSSGSANAWSTTTRRALQQLEKAH
                     CLLREPPQLVVVPAHGEAVQRGLGYYPQWIE"
     gene            1226..>1808
                     /locus_tag="VLF16_07340"
     CDS             1226..>1808
                     /locus_tag="VLF16_07340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003244527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5610 domain-containing protein"
                     /protein_id="HSX70733.1"
                     /translation="MTNLASLSPSLARPTGINTLANPRGHVEPQNTLANRLSSHLGLE
                     PGSLNGKRDDYTPEKVAGRILDFIDQRMKSEAAAGADPAKLQEMMGQAREGVEKGFAE
                     ARKILDGMGVLKGKVAEDIDATYAKIQEGFKNMESTYGIKAPSTGDTVSVTPRGEGFR
                     AQAETFDMQVTTRDGDRLNISVARASAEWSQKAS"
BASE COUNT          308 a          579 c          617 g          304 t
ORIGIN      
        1 agttgatcca gccgccctgg aagctctgcg gcagcaggcg cgagtcgttg gcctggacca
       61 ccggcagctt cggcatcagg gtgccggcct tgagcacgct cttggagacc ttgaccttgg
      121 cggtgacgcc caggtcgccg tagtcatcct gggcgcggcc ggtttcgcgg tcgcgctgga
      181 gcagctgggt gccgctctcg ctcgggctgg agtcgagctt caggcccagg gtgcctatgg
      241 catccacgcc gaagccgacg gtgccctcgg tgtagcccga ctcgaagcgc agcaggaagc
      301 cctgagccca ttcctcggcc ttggactggg cggcgccctc ctgacggaag tcgcggttca
      361 tatagaagtt gcgtgcctcg acgctggcct tgctgtcttc gatgaaggcg gcctggctga
      421 cggttggcag ggtgaggctg gtgcccagcg cggcgagggc cacgctgcgg gcgaggggag
      481 acttgctcat tgttattgtc ctcggctggt gatgacggcc cgacatccgg tccggtgcag
      541 cgaagggaat aaaccacttc gccgcgacgc cggcctctag accttggtcg agtcactcac
      601 tcgatccact gcggatagta gccaagcccc cgctgcacgg cttcgccatg ggccggcacc
      661 acgaccagct gcggcggttc ccgcagcagg cagtgcgcct tctccagctg ctggagggcc
      721 ctgcgggtcg ttgtcgacca tgcgtttgct gagccagaac ttcgccttcg gcccggtgaa
      781 cccctccagg caccagtgtc gccggtgaag aagaagcgac ggccgtcgtc gagggcgagg
      841 aacaggccga ccgagccggg agggcggccg gccatcggct cccgcgccag gctgccatcg
      901 ccgaaaaggt cgtggctgcg ttcgaaaccc aggagcggct gctcgtcgaa ctgcaagggc
      961 acccaacgga tggcatgggc gaactggctg ggtagcaccg ctggcggagt ggcaatgcgg
     1021 ctgaactcga tctccttgta gggcgcccac accggcacct cggcaaagtc ggcccaagcc
     1081 tgggcatgat cccagtggtt gtggccaagg ctttgctgcg cgcgggggga tccagcgctt
     1141 cgctcgatag ccgctggtcg ggttgccctc aaatttccgg cgtgtcggcc gtcaaaggtg
     1201 cagtgactct ttttggtacg ccatcatgac caatctggct tctctgtcgc cttcactggc
     1261 acgccccacc ggcatcaaca ccctggccaa tccgcgtggt cacgtcgagc cgcagaacac
     1321 gctcgccaac cggctttcca gtcatctggg cctcgagccc gggtccctca acggcaagcg
     1381 cgacgattac acgccggaga aagtggccgg ccgcatcctc gatttcatcg accagcgcat
     1441 gaagagcgag gccgcggcgg gcgccgatcc ggccaagctg caggagatga tgggccaggc
     1501 gcgcgagggc gtggagaagg gcttcgccga ggcgcgcaag atcctcgacg gcatgggcgt
     1561 actgaagggc aaggtcgcgg aggacatcga cgccacctat gccaagattc aggagggctt
     1621 caaaaacatg gagtccacct atggcatcaa ggcgccgagc accggtgaca ccgtttcggt
     1681 gacgccgcgt ggcgagggct tccgggctca ggcggaaacc ttcgacatgc aggtgacgac
     1741 ccgcgacggt gatcgcctga atatctcggt ggcgcgcgcc tcggccgaat ggtcgcagaa
     1801 ggccagcg
//
LOCUS       DATIHC010000453         4198 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_3623, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000453 DATIHC010000000
VERSION     DATIHC010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4198)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4198)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4198
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3623"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1089
                     /gene="tuf"
                     /locus_tag="VLF16_07345"
     CDS             <1..1089
                     /gene="tuf"
                     /locus_tag="VLF16_07345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011911974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HSX70734.1"
                     /translation="CSEVFGSAKVDFDKIDSAPEEKARGITINTAHVEYDSSVRHYAH
                     VDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLSRQVGVPYIVVFLNK
                     ADMVDDAELLELVEMEVRDLLSTYDFPGDDTPIIIGSALMALNGQDDNEMGTTAVKKL
                     VETLDVYIPEPVRAIDMPFLMPIEDVFSISGRGTVVTGRVERGIVRIQEEIEIVGLRP
                     TTKTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDEVERGQVLAKPGTIKPHTKFEAE
                     VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSCELPEGVEMVMPGDNIKMVVTLIKP
                     IAMDDGLRFAIREGGRTVGAGVVAKVIE"
     gene            1242..1553
                     /gene="rpsJ"
                     /locus_tag="VLF16_07350"
     CDS             1242..1553
                     /gene="rpsJ"
                     /locus_tag="VLF16_07350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014268624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HSX70735.1"
                     /translation="MQNQQIRIRLKAFDHRLIDQSTQEIVETAKRTGAQVRGPIPLPT
                     RKERYTVLISPHVNKDARDQYEIRTHKRVLDIVQPTDKTVDALMKLDLAAGVEVQISL
                     G"
     gene            1637..2272
                     /gene="rplC"
                     /locus_tag="VLF16_07355"
     CDS             1637..2272
                     /gene="rplC"
                     /locus_tag="VLF16_07355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003103877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HSX70736.1"
                     /translation="MTIGVVGRKAGMTRIFTEEGVSIPVTVIEIEPNRVTQFKSEESD
                     GYRAVQVTVGERRASRVTKAQAGHFAKANVAAGRGVWEFRLQDGEYQAGDQITAELFQ
                     AGQLVDVTGESKGKGYAGTIKRWNFRGQDNTHGNSVSHRAPGSIGQCQTPGRVFKGKK
                     MSGHMGAERVTVQSLEVVRVDAERNLLLIKGAVPGATGGDVLVRPAVKARG"
     gene            2287..2889
                     /gene="rplD"
                     /locus_tag="VLF16_07360"
     CDS             2287..2889
                     /gene="rplD"
                     /locus_tag="VLF16_07360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017640279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HSX70737.1"
                     /translation="MQLNVNGAQAIEVSERTFGSEFNETLVHQAVVAYMAGGRQGSRA
                     QKTRAEVTGGGKKPWRQKGTGRARSGSSVGPIWRGGGVTFAARPQDHSQKLNKKMYRA
                     ALRSILSELVRLDRLVVVEDFAVDAPKTKGLLGKLNGMGLSDVLIVTEAVDQNLYLAA
                     RNLPHVDVRDVQGTDPVSLIAFDKVLVTVSAVKKFEELLA"
     gene            2886..3185
                     /gene="rplW"
                     /locus_tag="VLF16_07365"
     CDS             2886..3185
                     /gene="rplW"
                     /locus_tag="VLF16_07365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011169628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HSX70738.1"
                     /translation="MNQERVFKVLVGPHISEKASVLADGKSQFVFKVATDATKLEIKK
                     AVESLFSVKVDAVRTVNVQGKTKRTARGLGKRNDWKKAYVSLQPGQDLDFTSSAE"
     gene            3200..4021
                     /gene="rplB"
                     /locus_tag="VLF16_07370"
     CDS             3200..4021
                     /gene="rplB"
                     /locus_tag="VLF16_07370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HSX70739.1"
                     /translation="MAIVKCKPTSAGRRFVVKVVNQELHKGAPYAPLLEKKSKSGGRN
                     NNGRITTRHIGGGHKQHYRLVDFRRNKDGIPAVVERVEYDPNRTAHIALLKYADGERR
                     YIIAPKGVSAGDQLVSGAAAPIKAGNSLPLRNIPVGSTVHAIELKPGKGAQLVRSAGA
                     SAQLVAREGAYVTVRLRSGEMRKVLSECRATLGEVSNSEHSLRSLGKAGAKRWRGVRP
                     TVRGVAMNPVDHPHGGGEGRTSGGRHPVSPWGFPTKGAKTRANKRTDNMIVRRRK"
     gene            4038..>4198
                     /locus_tag="VLF16_07375"
     CDS             4038..>4198
                     /locus_tag="VLF16_07375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S19 family protein"
                     /protein_id="HSX70740.1"
                     /translation="MPRSLKKGPFIDLHLLKKIEVAVEKNDRKPVKTWSRRSIILPQM
                     VGLTIAVHNG"
BASE COUNT          871 a         1214 c         1262 g          851 t
ORIGIN      
        1 tgctccgaag ttttcggttc ggccaaggtc gacttcgaca agatcgacag cgctccggaa
       61 gagaaggctc gcggcatcac catcaacacc gctcacgttg agtacgattc gtccgtacgt
      121 cactacgcgc acgttgactg cccgggtcac gccgactacg tgaagaacat gatcaccggt
      181 gctgcccaga tggacggcgc tatcctggtt tgctccgctg ccgacggccc gatgccgcag
      241 actcgtgagc acatcctgct gtcccgccag gtaggtgttc cttacatcgt cgtgttcctg
      301 aacaaggccg acatggtcga cgacgccgag ctgctggaac tggtcgagat ggaagttcgc
      361 gacctgctgt cgacctacga cttcccgggc gacgacactc cgatcatcat cggttccgct
      421 ctgatggctc tgaacggcca agatgacaac gaaatgggta ccaccgctgt caagaagctg
      481 gttgagaccc tggacgtcta catcccagag ccggttcgcg ccatcgacat gccgttcctg
      541 atgccgatcg aagacgtgtt ctcgatctcc ggtcgcggca ccgtggtaac tggtcgtgtt
      601 gagcgcggca tcgtccgcat ccaggaagag atcgaaatcg tcggtctgcg tccgaccacc
      661 aagaccacct gcaccggcgt ggaaatgttc cgcaagctgc tcgacgaagg tcgtgccggc
      721 gagaactgcg gcgtgctgct gcgcggcacc aagcgtgatg aggtcgagcg tggtcaggtt
      781 ctggccaagc cgggcaccat caagccgcac accaagttcg aagctgaggt gtacgtgctg
      841 tccaaggaag aaggtggtcg tcacaccccg ttcttcaagg gttaccgtcc gcagttctac
      901 ttccgtacca ccgacgtgac cggttcgtgc gaactgccgg aaggcgttga gatggtaatg
      961 ccgggcgaca acatcaagat ggttgtcacc ctgatcaagc cgatcgccat ggacgacggc
     1021 ctgcgtttcg caattcgcga aggcggccgt accgttggcg ccggcgtggt tgccaaggtc
     1081 atcgagtaat cgttgatcca agagaaaggg gcccttcggg gccccttttc ttttgattgg
     1141 tcaaaagttg acacccctta ggtgcatccg tacaattgcg cctcctttta acgggcgtat
     1201 tccgtccgtt ggggatagca gagatagagt ctgaggtcaa aatgcaaaac caacaaatcc
     1261 gtattcggtt gaaggctttt gaccatcgcc tgatcgatca atccacccag gaaatcgtgg
     1321 aaaccgcgaa acgtactggt gctcaggtgc gtggtcctat tcctctgcct actcgcaaag
     1381 agcggtacac cgttctgatc tccccgcacg tcaacaaaga cgcgcgtgat cagtacgaaa
     1441 ttcgtaccca caagcgtgtt ctggacatcg tccagccgac ggataaaacc gtcgatgcgc
     1501 tgatgaagct cgaccttgcg gcaggcgtgg aagtgcagat cagcctcggc taaaacctgg
     1561 cggttttagt cgtgtaacgc tctgaaatgg gcggccatag cgggtgaaag ccccgtacac
     1621 tcatgaggtt tacaacatga ctattggtgt agtcggtaga aaagcgggca tgacccgtat
     1681 tttcaccgaa gaaggtgtct ccattccggt cacggtcatc gagatcgagc cgaatcgcgt
     1741 cacccagttc aagtccgaag aaagcgatgg ctatcgcgct gtgcaggtga ccgtgggcga
     1801 gcgtcgcgct tcccgcgtga ccaaggctca ggctggtcat ttcgccaagg ctaatgtcgc
     1861 tgctggtcgt ggcgtctggg aattccgtct gcaggacggc gaataccagg ctggcgatca
     1921 gatcactgcc gaactgttcc aagctggcca gctggtagac gttaccggtg agtccaaggg
     1981 taaaggctat gccggtacca tcaagcgctg gaacttccgc ggtcaggaca atacccacgg
     2041 taactccgtt tcccaccgcg ctccgggctc catcggccag tgccagactc ctggtcgtgt
     2101 cttcaagggc aagaaaatgt ccggtcatat gggcgctgag cgcgtgaccg tgcagtccct
     2161 ggaagtggtc cgtgtcgacg ccgaacgcaa tctgctgctg atcaagggcg ccgttccggg
     2221 cgctaccggt ggcgatgtgc tggtgcgtcc ggctgtcaaa gctcgcggtt aataggggaa
     2281 gctgagatgc aattgaatgt aaatggcgct caggctatcg aagtcagcga gcgcactttc
     2341 ggcagcgagt tcaacgagac tctggtgcac caggcagtcg tagcctacat ggctggcggt
     2401 cgtcagggtt cccgtgctca gaagacccgt gccgaagtca ccggtggtgg caagaagccg
     2461 tggcgccaga agggcactgg tcgtgctcgt tccggttcca gcgttggtcc gatctggcgt
     2521 ggcggtggcg tgaccttcgc ggccaggccg caggatcaca gccagaagct gaacaagaag
     2581 atgtaccgcg cagctctgcg ctccatcctc tccgagctgg ttcgtctgga tcgtctggtc
     2641 gtggtcgaag acttcgccgt cgacgctccg aagaccaagg gtctgctggg caagctgaac
     2701 ggcatgggcc tgagcgacgt gctgatcgtc accgaagccg ttgaccagaa cctgtacctg
     2761 gctgcgcgca acctgccgca tgtcgacgtg cgcgacgttc aaggcaccga tccggtcagc
     2821 ctgatcgcct tcgacaaagt gctggtaacc gtgtcggccg tgaagaaatt cgaggagctg
     2881 ctggcatgaa ccaggaacgc gtattcaaag tgctggttgg cccgcacatc tccgagaagg
     2941 cctccgtgct ggcagatggc aagagccaat tcgttttcaa ggttgccacc gatgcaacca
     3001 agctggaaat caagaaggcc gtagaaagcc tgttcagcgt gaaggtagac gccgtccgca
     3061 ctgtcaacgt acagggcaag accaagcgca ccgctcgcgg cctgggcaag cgtaacgact
     3121 ggaagaaggc gtatgtctcc ctccagccgg gccaggatct cgatttcacc agcagtgctg
     3181 agtaaggtag gggcgcatca tggcaatcgt taaatgcaaa ccgacttccg ctggccgccg
     3241 tttcgtggtc aaggtggtca atcaggagct gcacaaaggc gctccgtacg ctccgctgct
     3301 cgagaagaag tcgaagtccg gcggccgtaa caacaacggt cgtatcacca ctcgccacat
     3361 cggcggtggc cacaagcagc actaccgtct ggtcgacttc cgtcgcaaca aggatggcat
     3421 tcctgccgtc gttgagcgcg tggaatacga tccgaaccgt accgcccaca tcgctctgct
     3481 gaaatatgcc gacggtgagc gtcgctacat catcgcgccg aaaggtgtga gcgctggcga
     3541 tcaactggta tccggtgccg ctgctccgat caaggctggc aatagcctgc cgctgcgcaa
     3601 catccccgtt ggttcgaccg ttcacgcgat cgagctgaag ccgggtaaag gtgctcagct
     3661 ggttcgctcc gcgggtgctt ccgctcagct ggtagctcgt gaaggtgcct acgtcaccgt
     3721 gcgtctgcgc tccggcgaga tgcgcaaggt tctctccgag tgccgtgcga ctctgggtga
     3781 agtttccaac tccgagcaca gcctgcgttc cctgggtaaa gccggtgcca agcgttggcg
     3841 cggcgttcgc ccgaccgttc gtggtgttgc catgaacccg gtcgaccacc cgcatggtgg
     3901 tggtgagggt cgtacctctg gtggtcgtca ccctgtttcg ccgtggggct tcccgaccaa
     3961 gggtgccaag actcgtgcga acaagcgtac cgacaacatg atcgttcgcc gccgtaagta
     4021 attagaggga tacgacagtg ccgcgttctc tgaaaaaagg tccttttatc gatcttcacc
     4081 tgctgaagaa gatcgaagtg gcggtagaaa agaatgatcg caagccggtt aaaacctggt
     4141 cgcgtcgctc catcattctg ccgcagatgg tcggtctgac cattgctgtg cataacgg
//
LOCUS       DATIHC010000454         3134 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8322, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000454 DATIHC010000000
VERSION     DATIHC010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3134)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3134)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3134
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8322"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(209..1414)
                     /locus_tag="VLF16_07380"
     CDS             complement(209..1414)
                     /locus_tag="VLF16_07380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012018462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HSX70741.1"
                     /translation="MDLTQMLKILSSQDGSDLYLSTGAPPCAKFNGVLKPLSQEPLKP
                     GDVAAIAASVMDAEQRAEFEKELEMNLAISVPAVGRFRINIFKQRNEVSIVARNIKME
                     IPKFEDLKLPEVLLKTVMEKRGLVLFVGGTGSGKSTSLAALIDYRNRNSGGHIITIED
                     PLEYVHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFA
                     DTGHLAISTLHANNANQALDRIINFFPEERRPQLLNDLGNNLRAFISQRLVKTTDGKR
                     RAAVEVMLGTPTVRDLIKRNEFSELKEIMEKSKNLGMQTFDQALIDLVNEGAIEEEEA
                     LKNADSANNVRLKLKLYKDNPAAPQAAAPAPAPEVAPAAAPANWAMELKLEDIEEEMP
                     PEDPGRPGI"
     gene            1584..1862
                     /locus_tag="VLF16_07385"
     CDS             1584..1862
                     /locus_tag="VLF16_07385"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003300382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HSX70742.1"
                     /translation="MPKAMARHILVKTEAEAAALKKRIAAGEAFDVLAKKHSTCPSGK
                     KGGDLGEVRPGQMVRAVDQVIFKKALREVHGPVKTQFGYHLIQVFYRE"
     gene            complement(1869..2306)
                     /locus_tag="VLF16_07390"
     CDS             complement(1869..2306)
                     /locus_tag="VLF16_07390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004885018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YqaA family protein"
                     /protein_id="HSX70743.1"
                     /translation="MLDLSLYLGLFISAFGAASLLPLQSEAVLVGLLLGGAQPVVALL
                     VVASVGNVLGSVLNAAIGRGVERFRERRWFPVSAQRLEQAKATYRRYGRWSLLLSWVP
                     VIGDPLTLVAGVMREPWWSFLLLVGLAKAGRYLALAAITLGWA"
     gene            2447..>3134
                     /locus_tag="VLF16_07395"
     CDS             2447..>3134
                     /locus_tag="VLF16_07395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016486587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSX70744.1"
                     /translation="MISTANITMQFGAKPLFENVSVKFNNGNRYGLIGANGCGKSTFM
                     KILGGDLEPSGGQVMLEPNVRLGKLRQDQFAYEEFTVIDTVIMGHEELYKVKAERDRI
                     YSLPEMSEEDGMKVGELEGEFAEMDGYTAESRAGELLLGLGIPLEQHFGPMSEVAPGW
                     KLRVLLAQALFSDPEVLLLDEPTNHLDINTIRWLENILTARNSTMIIISHDRHFLNSV
                     CTHMADLDYGE"
BASE COUNT          566 a         1012 c          999 g          557 t
ORIGIN      
        1 aactccggct atcccaacga ggatctgctg ggcctgtacg gcatcgcctg gatgaagcgc
       61 ttcatcgact tcgacaaccg ctacagccag ttcctctgcg gtccgaatca cgagggcgac
      121 ttcgccatct ccgactatcg gcagaactgc ccgtactgac cggcgaaacg aagggcggtc
      181 acccgccctt atttatgtcg cgtccgggtc agatgcccgg gcgccccggg tcttccggcg
      241 gcatttcttc ctcgatgtct tccagcttga gttccatcgc ccagttggcc ggggccgcgg
      301 cgggcgccac ctcgggggca ggcgccggcg cggcggcctg gggcgcggcc gggttgtcct
      361 tgtacagctt gagcttgaga cgcacgttgt tggccgagtc ggcgttcttc agcgcctctt
      421 cctcctcgat ggcgccttcg ttgaccaggt cgatcagcgc ctggtcgaag gtctgcatgc
      481 ccaggttctt cgacttctcc atgatttcct tcagctcgga gaattcattg cgcttgatca
      541 ggtcgcgcac ggtcggcgtg ccgagcatca cctccaccgc ggcgcggcgc ttgccgtcgg
      601 tggtcttgac caggcgctgg gagatgaagg cgcgcaggtt gttgcccaga tcgttgagca
      661 attgcgggcg acgctcttcg gggaagaagt tgatgatgcg gtccagcgcc tggttggcgt
      721 tgttggcgtg cagcgtggag atggccaggt ggccggtgtc ggcgaacgcc agggcgtgct
      781 ccatggtctc gcggtcgcgg atctcgccga tcaggatcac gtccggtgcc tggcgcaggg
      841 tgttcttcag cgcggcgtgg aagctgcggg tgtccacgcc gacctcgcgc tggttgatga
      901 tcgacttctt gtgccggtgc acgtactcca acgggtcttc gatggtgatg atgtggccgc
      961 cgctgttgcg gttgcggtag tcgatcagcg ccgccagcga ggtcgacttg cccgaaccgg
     1021 tgccaccgac gaacaggacc aggccgcgct tctccatcac cgtcttgagc agcacctcgg
     1081 gcagcttgag gtcctcgaac ttggggattt ccatcttgat gttgcgcgca acgatggaca
     1141 cctcgttgcg ctgcttgaag atgttgatgc ggaagcgacc gacggcgggc acggagatgg
     1201 ccaggttcat ctccagctcc ttttcgaact cggcgcgctg ctcggcgtcc atcacgctgg
     1261 cggcgatggc ggccacgtcg cccggcttga gcggttcctg gctgagcggc ttgagcacgc
     1321 cgttgaactt ggcgcagggc ggcgcgccgg tggacagata gaggtcggac ccgtcctggc
     1381 tggacaggat tttcagcatc tgggtgaggt ccatcgcgca cgcttccgtc tggatgagtg
     1441 gaatccgcct atctctcccg aacacctagg cagattgaaa aggtaggcca gcttcgccgg
     1501 ccaggcagcc tgaaaaatgg cgtcattctg atggcgcagc gaatgctggc acaatagcgc
     1561 cctcgcgaaa tgaggaccgc atcatgccca aggccatggc ccgccacatt ctggtgaaga
     1621 ccgaggcgga agcagccgcc ctgaagaagc gcatcgccgc cggcgaagcc ttcgacgtgc
     1681 tggcgaagaa acactccacc tgcccctccg gcaagaaagg cggcgatctg ggcgaggtac
     1741 gccctgggca gatggtccgc gcggtggacc aggtgatctt caagaaggcg ctgcgcgagg
     1801 tgcacggtcc ggtgaagacc cagttcggct atcacctgat ccaggtgttc taccgcgagt
     1861 gaccgggctc aggcccaacc gagggtaatg gccgccagcg ccaggtagcg gccggccttg
     1921 gccaggccga ccagcagcag gaagctccac cagggctcgc gcatcacgcc ggccaccagc
     1981 gtcagcggat cgccgatgac cggcacccag ctcagcagca gcgaccagcg tccgtagcgc
     2041 cggtaggtcg ccttggcctg ctccaggcgc tgcgcgctga ccgggaacca gcgccgctcg
     2101 cggaaacgtt cgacgccgcg gccgatcgcc gcattgagta ccgaacccag cacattgccg
     2161 acgctggcca ccaccagcag cgcgaccaca ggctgcgcac cgcccagcaa cagcccgacc
     2221 agcaccgcct ccgactgcag cggcagcaga ctggcggcgc cgaacgccga aatgaaaaga
     2281 cccaggtaga gagagaggtc gagcacgcgc gagcaccgaa gaaaccgctc cgcgttatag
     2341 cctgttcctc gaccggccga cagccaaacc tgtcgaatcc gcgccaatca ctctacaatg
     2401 cgcccctttt tctcgggcca tgcgccctcg cccacaggat tttgccgtga tctccaccgc
     2461 caatatcacc atgcagttcg gtgccaagcc gctgttcgag aacgtttccg tcaagttcaa
     2521 caacggcaac cgctacggcc tgatcggcgc caacggttgc ggcaagtcga ccttcatgaa
     2581 aatcctcggc ggcgatctgg agccctctgg cggccaggtg atgctggagc cgaacgtgcg
     2641 cctgggcaag ctgcgccagg accagttcgc ctacgaagaa ttcaccgtga tcgataccgt
     2701 gatcatgggc cacgaggagc tgtacaaggt caaggccgag cgcgaccgca tctattcgct
     2761 gccggagatg agcgaagaag acggcatgaa ggtcggcgag ctggagggcg agttcgccga
     2821 gatggacggc tacaccgccg aatcccgcgc cggcgaactg ctgctcggcc tgggcatccc
     2881 gctggaacag cacttcggcc cgatgagcga agtggctccg ggctggaagc tgcgcgtgct
     2941 gctggcccag gcgctgttct ccgacccgga agtgctgctg ctcgacgagc cgaccaacca
     3001 cctggacatc aacaccatcc gctggctgga aaacatcctc acggcgcgta acagcaccat
     3061 gatcatcatt tcccacgacc gtcacttcct caatagcgtg tgcacgcaca tggcggatct
     3121 ggattatggc gagc
//
LOCUS       DATIHC010000455         2587 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12884, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000455 DATIHC010000000
VERSION     DATIHC010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2587
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12884"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..452
                     /locus_tag="VLF16_07400"
     CDS             <1..452
                     /locus_tag="VLF16_07400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012269961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HSX70745.1"
                     /translation="GTEAHFLMPEEPQPVCSPELLAGRDQFEAAELASLPLLQQSTRP
                     YAWRQWFAAQGLSVPHDLGGPRYELFSMLAQAASHGMGVALIPPFLIQRELAEGRLVP
                     AHRAALHSSDKAYYLMIPERKAESAALRAFRDWLLQAAGAYQGENRT"
     gene            complement(498..1175)
                     /locus_tag="VLF16_07405"
     CDS             complement(498..1175)
                     /locus_tag="VLF16_07405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70746.1"
                     /translation="MTAAEQVQVYASRATSSLLLVRGEGFQEEHRQRLEKDIADLETA
                     GQAAMSSSSEIPGLTNQLVTQLRRGVSFGPNEEDMPWEYPQDLAKSLRELLIVARNVP
                     DADPAGELPAKVEYLAVQYLSRSYIGSFEIAREQTDNYVGQDERALVPQIDKELGALD
                     SKGNPAVAKLKTRWKFLRAALMDMNSGSNALASASGRAFAPTTVDRHTRSMTGQWMSL
                     GQVAGSP"
     gene            1546..2514
                     /locus_tag="VLF16_07410"
     CDS             1546..2514
                     /locus_tag="VLF16_07410"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="HSX70747.1"
                     /translation="MDDNDQAPSELETLTLALLHSRGEVERLRERELLVGSLLAGLNA
                     VLWAFDWEQQRMVYVSPAYERIFGRSTALLLADYGEWTNSIYPDDMEYAAQSLESVLE
                     VGSVEQREYRIIRGDGEVRWLSDKCFISPPNLFGGQSLIVGIAEDITEKKVLQSELHR
                     LATSDVLTGASNRRHFFERAEELFVEARDGGKPLSFLLLDIDDFKKINDRYGHQMGDR
                     VLQRVSHCGAYVLRRDDLFGRIGGEEFAAVFPYCDAEQARQVAERLQREVQRLQFPCD
                     GESFGVTISQGITVLREGDELDDLYGRADAAMYQAKRQGKDCIVIG"
BASE COUNT          442 a          839 c          857 g          449 t
ORIGIN      
        1 ccggtaccga ggcccacttc ctgatgcccg aggagccgca gccggtatgc agccccgaat
       61 tgctggctgg gcgcgatcag ttcgaggccg ccgaactggc cagcctgccg ctgctgcagc
      121 agagcacccg gccctacgcc tggcgccagt ggttcgcggc ccagggcctg agcgtgccgc
      181 acgacctcgg cgggccgcgc tacgagctgt tctccatgct ggcccaggcc gccagccatg
      241 gcatgggcgt ggcgctgatc ccgcccttcc tgatccagcg cgagctggcc gaggggcggc
      301 tggtgccggc gcatcgggcg gcgctgcaca gtagcgacaa ggcctattac ctgatgattc
      361 ccgagcgcaa ggccgagtcc gcggccctgc gcgcatttcg cgactggctg ctgcaggcgg
      421 cgggtgccta tcagggcgaa aaccgcacat gaaaaagccg ggcgctgggc ccggctgtgt
      481 gaggcgatcc gcggggttta cggcgaaccg gcaacctggc ccagcgacat ccactggccg
      541 gtcatggagc gggtgtggcg gtccacggtg gtcggcgcga aggcgcgacc cgaggcgctg
      601 gccagagcgt tgctgccgct gttcatgtcc atcagcgcgg cacgcaggaa cttccagcgc
      661 gtcttcagct tggcgaccgc cgggttgccc ttgctgtcga gcgcccccag ttccttgtcg
      721 atctgcggca ccagcgcgcg ctcgtcctgg ccgacgtagt tgtcggtctg ctcgcgggcg
      781 atctcgaagc tgccgatgta ggaacggctg aggtattgca cggccaggta ctcgaccttg
      841 gccggcagtt ctccggccgg gtcggcgtcc ggcacgttgc gggcgacgat caacagttcg
      901 cgcagggact tggccaggtc ctggggatat tcccagggca tgtcttcttc gttggggcca
      961 aaggaaacac cgcggcgtaa ctgggtaaca agctggttgg tcaggccggg tatttccgaa
     1021 ctgctgctca tggcggcctg tccggcggtt tccagatcgg cgatgtcctt ttccagacgc
     1081 tgccggtgct cttcctggaa gccttcacca cggaccagca gcaggctgct ggtggcccgg
     1141 ctggcataca cctgaacctg ctcggcggcg gtcatggcgg ccgcctgggc gacggccgaa
     1201 accgccgtca tgaaccccaa tatcactgga aaaatcaatc gaatcagagg attacgattc
     1261 atcctggtcg ctccttctta ttcttgtcgg cgcgtttctt attggttggc tagagagccg
     1321 ttgacgcagc ggcaacagac tactgcgctt gcaatagcaa ggtatgagcc aaaagagtga
     1381 tttacatcgc aattctggcg ataccgcaaa aaatcgcgcc ggttccgcga tcctgaccgc
     1441 atgtttgaaa tctctgccgc tcgtcacacc gcggcggtgc cagcatcgct agtggcacga
     1501 tgaggcgctt aggcttcggc catgaatctc acgaggcgcc gtccgatgga cgacaacgac
     1561 caggctccca gcgagcttga aaccctcacc ctggcgctgc tgcacagccg gggggaagtc
     1621 gagcgtctgc gtgagcgtga actgctggtg ggcagcctgc tcgccggtct caatgccgtg
     1681 ctctgggcct tcgactggga acagcagcgc atggtctacg tgagccccgc ctacgagcgc
     1741 atcttcggac gcagcaccgc gctgctgctg gccgactacg gcgaatggac caacagcatc
     1801 tatcccgacg acatggaata cgccgcccag agcctggagt cggtattgga ggtgggctcc
     1861 gtggagcaac gtgaataccg catcatccgc ggcgacggcg aagtgcgctg gctcagcgac
     1921 aagtgcttca tcagcccgcc caacctgttc ggcggccagt cgctgatcgt cggcatcgcc
     1981 gaggacatca ccgaaaagaa ggtgctgcag agcgaactgc accgcctggc caccagcgat
     2041 gtgctgaccg gtgcgagcaa ccgccggcac ttcttcgagc gcgccgagga gttgttcgtc
     2101 gaggcccgcg atggcggcaa gccgctgtcg ttcctgctgc tcgacatcga cgacttcaag
     2161 aagatcaacg accgctacgg ccaccagatg ggcgaccgcg tgctgcagcg ggtatcgcac
     2221 tgcggggcct acgtgctgcg ccgcgatgac ctgttcgggc gcatcggtgg cgaggagttc
     2281 gctgcggtgt tcccctactg cgatgccgag caggcgcgcc aggtcgccga gcgcctgcag
     2341 cgcgaggtgc agcgcctgca gttcccctgc gacggcgaga gcttcggcgt gaccatcagc
     2401 cagggcatca cggtgctgcg cgaaggcgac gagctggacg acctctacgg ccgcgccgac
     2461 gccgcgatgt accaggccaa gcgccagggc aaggactgca tcgtcatcgg ctgatggcga
     2521 gcgtcgtccg ttccgatcag ctgcgctgca gcgacgaggc cgccaggccc agacccagtg
     2581 ccaccag
//
LOCUS       DATIHC010000456         5506 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_3631, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000456 DATIHC010000000
VERSION     DATIHC010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5506
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3631"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(96..2018)
                     /locus_tag="VLF16_07415"
     CDS             complement(96..2018)
                     /locus_tag="VLF16_07415"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HSX70748.1"
                     /translation="MKRHYRPDIDGIRAIAVMSVLLFHAGFASFSGGYVGVDVFFVIS
                     GFLITRLIKDEIEVGRFGFGEFYARRARRLFPALFVTVAATFLLAVLMFSPEHMRRFA
                     GELIYAVTSLSNFYFWGESGYFDADAHFKPLLHTWSLSVEEQFYLFWPLLLVFLLTRL
                     RGLSAALAILALGGISFALNLLFQGGGDVFKGVSTTLARAFEDGGATIYFLTPFRIFE
                     FAIGAVLVWLMGFRPRSNWPLELLLLVGLVLAVAPVFLYDDTLLFPSYYALAPCLGAA
                     LMIYAGETRYLGRILSNPLSVRIGLISYSLYLVHWPVYVFYRYYVYGELTTVEKYGVL
                     LASFALAFVLYHFVEQRYRRPASAAGVTSQAAFGLGCALLAMLLILPAATAWANGGWT
                     SRAKKFVVNLNEMKCESDSLCELQKGSRGKVLFVGDSHMGHHMRTLLDKFSGYTVHVF
                     NVSSCFFGKNLGSRDHNEGRGKVCERANHNLRSYIYSHGQEIEYVVHGQRWHGYLDRL
                     YTLSGHQALTGSDKQKYRFMLQDVKELYASVNAKKLILGAAPNSAAGCIERSDFFPMK
                     CRGRGQNLLRNVNIFKKVSEGAAIEGASFIHPVDFLCGGKKCREAIGNRKLYRNTDHL
                     TRDGSNLVLREFNVEP"
     gene            complement(2060..3184)
                     /locus_tag="VLF16_07420"
     CDS             complement(2060..3184)
                     /locus_tag="VLF16_07420"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSX70749.1"
                     /translation="MSHEPPIVLMLAPVHRAWGNRVVRECVSLAEAGYRVRALMRCEQ
                     EHVAEGVTFLPAPAYRNRLQRFLNLPRVLRMALAQRADIYHLHNPDMIPLALLLKLLG
                     KTVIYDTHEDYSQRLLLRSWLPKPLRRPLGYLVSLAERGLSHWVDATLVTQERQLPRF
                     SKRCRLLRNAPVLSATLMACVRAQAEALAREARPFRLIYAGGLSRARGLFNALDALQA
                     LNARGLATRLWLLGPELEPCLDQAMRHPAWAHVDYLGLQAHETVLARMMRADVGLAVL
                     ADEGDHAAARPTKLFEYMACGLPFVASDFPLWREFVGDRGGIWVRADDPAGLLEGLCA
                     LLADDTWRRELAAQGGEFVAGFNWDEEKQSLLSLYEHLSR"
     gene            complement(3181..5097)
                     /locus_tag="VLF16_07425"
     CDS             complement(3181..5097)
                     /locus_tag="VLF16_07425"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSX70750.1"
                     /translation="MQQSNREDALGVYVARFVLSLHSEFDNKSAIGVFDSEQGLQYLQ
                     IEDLSNSLSQPQLRGLCCVGNRLYVTTPSSLRIYVIEPSPGPGQAWFRLQREVVLPEW
                     VLDRRPDAGLLAVHYAAGKGRLLVACNALASIEEFDLEGEFFGRRHLWQIAPAHFQVP
                     AQASGKSGFGHIRGICENPSGELFLTVAFRNWSDAGSLIGYDSGELLLDQLETPHSGL
                     FLDGRYFVLDVQRGSLLGLPLAADGETLQAKATSQGFAARGLKINLRGLAGDSEGLYA
                     GFFNFEKDEKKKVASQIVRFDPRSGAQDKFYLLPEVAGFRFPAPFYLSPFAADICRGV
                     GDSLQLVDATRPQPCPASPVVEASCAEPAAPMVKPPAAVVQQAAPVRKEQSLGKPVIE
                     VADVSLSYRRGVRLHTWLRQRQDRDFRALKGVSLTLREGEVLGLVGRNGSGKSTMGML
                     LAGILQPDQGSIERHGRIQLLSLGIGFNNELSGRDNVFVNAALLGLSRSAVLQHLDEI
                     VEFSEIGEFIDEPIRTYSAGMRSRLAFAIATVIQPDVLILDEVLSTGDDSFRHKAEAR
                     MREMKGKAKCVVMVSHSANQIKKLCSRVVWLERGHLILDGRPKQVMPEYEAFCQSPEK
                     WLRRHPNVAARLQE"
     gene            complement(5067..>5506)
                     /locus_tag="VLF16_07430"
     CDS             complement(5067..>5506)
                     /locus_tag="VLF16_07430"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSX70751.1"
                     /translation="ASVGMLIVMCWSYATLGVQSLAVLPLLLLVFFIAYAVSLFVAVT
                     QVFFADAAKLVAYGIRAGFFLSPVLYPTSRVLDADNIPAFAKLLFELNPIGWIIEAFR
                     RVILDGGMFDWLQYGVQLALALLLVQVGLLYLRLCSNRIVKML"
BASE COUNT         1300 a         1819 c         1477 g          910 t
ORIGIN      
        1 actacgatca attcgctaga gctagtcgca agcgtagtaa ccactgcgct catagatgtt
       61 cttcgtcgac gaccagcact gcaattatga ccccatcagg gctcaacatt aaactcccgc
      121 agcacgagat tactaccatc tcgcgttaaa tgatcggtgt tcctgtacaa ctttctattc
      181 ccgatagcct cacgacactt ctttccccca caaagaaagt ctaccggatg aataaaactc
      241 gccccctcaa tagccgcccc ctcagaaacc ttcttaaaaa tattcacatt acgtaataag
      301 ttttgcccac gcccgcgaca tttcatagga aaaaagtctg agcgctcaat gcagccggca
      361 gcagagttag gggccgcacc caatatcaat tttttagcat taacagacgc atatagttct
      421 tttacatcct ggagcatgaa acgatacttc tgcttatcgc tcccagttaa agcctgatgt
      481 cccgaaaggg tatacaaccg atccagataa ccatgccacc gctgcccgtg aaccacgtac
      541 tcaatctctt gaccatggga gtatatgtaa gacctcaaat tatgatttgc acgctcacaa
      601 accttacctc gcccctcatt atgatcccgg ctacctaaat ttttaccaaa aaaacaggac
      661 gaaacgttaa aaacgtgaac cgtatagcct gaaaacttat ccaacagtgt tctcatatga
      721 tgccccatat gagaatcgcc aacaaaaagc acttttcccc ttgaaccttt ctgcagttcg
      781 caaaggctat cactctcaca cttcatttca ttgagattaa cgacaaactt cttcgcccta
      841 cttgtccagc ctccattagc ccaggctgtt gcggctggca gaatcaataa catcgccaac
      901 agtgcacacc ccagaccaaa tgccgcctgt gaagtcacgc cagcggctga tgccgggcgt
      961 cggtagcgct gttccacgaa gtgatacagc acgaatgcca gggcaaagga cgcgagcaat
     1021 accccatatt tctcgaccgt ggtgagctcg ccgtaaacgt agtagcgata gaacacatat
     1081 acaggccagt gcaccaggta caaggaatag ctgataaggc caatccgcac ggacagggga
     1141 ttgctcagaa tccggcccag ataacgagtc tcgccagcgt agatcatcaa ggcggcgcca
     1201 aggcagggtg ccagcgcgta gtagctggga aacagcaggg tatcgtcgta gaggaacact
     1261 ggcgcgaccg ccagcaccag cccgacaagc agcagcagtt ccagcggcca gttgcttctg
     1321 ggtctgaagc ccatcagcca gaccagtacc gcgccgatgg cgaactcgaa aatccggaat
     1381 ggcgtcagaa agtagatggt cgcgccaccg tcctcaaacg cccgcgccag cgtcgtagaa
     1441 acgcccttga aaacgtctcc tccgccctga aataacagat ttagtgcaaa gctgatgccg
     1501 cccaacgcca gtatcgccag cgccgccgac aagccacgca aacgcgtcag caagaacacc
     1561 agcagcagcg gccagaacag atagaactgc tcctcgacgc tcagcgacca ggtatgcagc
     1621 aggggtttga agtgcgcatc ggcatcgaaa taaccactct cgccccagaa atagaaattc
     1681 gacaaactgg tgaccgcata aatcagctcg ccggcaaaac gccgcatatg ctctggcgag
     1741 aacatcagca cggcgaggag aaaagtcgcg gcaacggtca cgaacagcgc cgggaacagc
     1801 ctgcgggcac gccgcgcgta gaactcgccg aagccgaaac gccccacctc gatctcatcc
     1861 ttgatcaggc gcgtaatcag aaaaccactg atcacgaaga atacgtccac cccgacatag
     1921 ccgccggaaa acgacgcgaa ccccgcatga aagagcagca cgctcatcac ggcgatagcg
     1981 cgaatgccgt caatatccgg cctgtagtgc cttttcattc attccaccac aactgaaatc
     2041 acgtcgaccg ccagacagct catcgactca aatgctcgta taacgacagc agactctgct
     2101 tttcttcgtc ccagttgaag cctgcgacga actcgcctcc ctgcgcggcc agctctcgtc
     2161 gccaagtatc atccgcaagg agcgcgcata acccctcgag caaccccgcg gggtcatccg
     2221 ctcgaaccca gatgccgcca cggtcaccga caaactcgcg ccacaaggga aagtcgctgg
     2281 ccacgaacgg caagccgcag gccatgtact cgaacaactt ggtgggcctg gccgcagcat
     2341 gatcgccctc atcggcgagc accgccagac cgacgtcggc acgcatcata cgcgccagca
     2401 cggtttcgtg cgcctgcagg cccaggtagt ccacatgcgc ccaggccgga tgacgcatcg
     2461 cctggtcaag acagggctcc agctccgggc ccagcaacca cagacgagtg gccaggcccc
     2521 gcgcattgag cgcctgcagc gcatccagcg cgttgaacag cccacgagcc cgcgacaggc
     2581 cgccggcata gatcaggcga aagggccggg cctcgcgcgc cagggcctct gcctgagcac
     2641 gcacgcacgc catcagcgtc gcggacagca ccggggcatt gcgcaacagc cggcagcgtt
     2701 tggagaaacg cggcaactgg cgttcctgcg tgaccagcgt ggcatccacc caatggctga
     2761 gcccgcgctc ggccagcgac accagatacc ccagcggccg acgcagcggt ttcggcagcc
     2821 aactgcgcag cagcagccgc tgcgagtaat cctcatgggt gtcgtagatc accgtcttgc
     2881 ccagcagctt gagcagcagg gccagcggga tcatatcggg gttgtgcagg tgatagatgt
     2941 cggcacgctg tgccagcgcc atgcgcaaca ctcgaggcag gttgagaaag cgctgcaggc
     3001 ggttgcgata tgccggggcc ggcaggaagg tcacaccctc ggcgacatgc tcctgctcgc
     3061 agcgcatcag tgccctgacc cggtagcccg cctcggccag ggatacgcat tcgcgcacca
     3121 cccgattgcc ccaggcccga tggaccgggg caagcatcag cacgatcggc ggttcgtgac
     3181 tcactcctgc agcctcgccg cgacattggg gtgacgccgc agccacttct cagggctctg
     3241 gcaaaacgcc tcgtactcgg gcatcacctg cttcggcctg ccatcgagta tcagatggcc
     3301 tcgctccagc caaaccactc ggctgcagag cttcttgatc tgattggcgc tgtgggaaac
     3361 catcaccacg catttcgcct tgcccttcat ctcgcgcatg cgcgcctcgg ccttgtgccg
     3421 gaaggagtcg tccccggtgg agagtacttc gtcgagaatc aacacatcgg gctggatcac
     3481 cgtggcaata gcgaacgcca agcggctgcg catgccggcc gaataggtgc gaattggctc
     3541 gtcgatgaac tcgccaatct cggaaaactc gacgatctcg tccaagtgct gcagcaccgc
     3601 acttcgcgac aggccaagca gcgctgcgtt gacgaacaca ttgtcgcgcc cggaaagctc
     3661 gttgttgaag ccgatcccaa gcgacaacaa ttgaatccgc ccatgtcgct cgatactgcc
     3721 ctgatcgggc tgcaggatgc cggccagcag catgcccatg gtgctcttgc ccgaaccgtt
     3781 gcgcccaacc aaacccagca cctcgccctc gcgcagggtc agcgatacgc ctttgagcgc
     3841 ccggaaatcg cgatcctggc gctggcgcag ccaggtatgc agacgaaccc cgcgtcgata
     3901 ggacaggctg acgtcggcaa cctcgatcac aggcttgccg agcgactgct ccttgcgcac
     3961 cggcgccgcc tgctgcacta cagcagccgg aggcttgacc atgggcgccg caggctctgc
     4021 gcatgatgcc tcgacgaccg gcgaggccgg gcagggttgc ggccgggtgg catcgaccaa
     4081 ctgcaacgag tcgccgacac cacggcagat atccgccgcg aaggggctca gatagaacgg
     4141 cgccgggaaa cggaagcccg ccacctccgg caacagatag aacttgtcct gtgcgccgct
     4201 gcgcggatcg aagcggacga tctgcgaggc gaccttcttc ttctcgtcct tctcgaagtt
     4261 gaagaacccc gcgtacaggc cttcgctgtc gccggccagc ccgcgcagat tgatcttcaa
     4321 tccacgcgcg gcgaagccct ggctcgtcgc cttggcctgc aatgtctcgc catcggcggc
     4381 cagcggcagg cccagcaggc tgccgcgctg cacgtccagc acgaagtagc ggccatcgag
     4441 gaacaggccc gagtgcggcg tctccagttg gtccagcagc aactcgccgg agtcgtagcc
     4501 gatcaggctg ccggcgtccg accagttgcg gaaggccaca gtcaggaaca gctccccgct
     4561 gggattctcg caaataccgc ggatatgccc gaaaccgctc ttgcccgaag cctgggccgg
     4621 cacctgaaag tgtgccggag cgatctgcca gagatggcga cggccgaaga actcgccctc
     4681 taggtcaaac tcctcgatgc tcgccagggc attgcaagcc accagcaaac gccccttgcc
     4741 agcggcgtag tgcacggcca gcagcccggc atcggggcgt ctgtccagca cccactccgg
     4801 cagcaccacc tcacgctgca agcggaacca ggcctggccc ggccccgggc tcggctcgat
     4861 gacatagata cgcaggctcg acggcgtcgt cacatacagc cggttcccca cgcagcacag
     4921 gccgcgtagc tggggttggc tcagtgagtt ggagagatcc tcgatctgca ggtactgcag
     4981 cccctgctcg ctatcgaaca caccgatagc cgacttgttg tcgaattccg aatgcagcga
     5041 aagaacgaaa cgtgccacat aaacccctag agcatcttca cgattcgatt gctgcacagc
     5101 cgcagataca gcagccccac ctgcaccagc agcaacgcca gcgccaactg cacgccgtac
     5161 tgcagccagt cgaacatccc cccgtcgaga atcacccggc gaaacgcttc gatgatccag
     5221 ccaatggggt tgagctcgaa cagcagcttg gcaaaggcgg gaatgttatc cgcatccagc
     5281 acccgtgaag tggggtacag caccgggctg aggaagaacc ccgcacggat gccatacgcc
     5341 accagtttcg cggcatccgc gaagaacacc tgggtcaccg ccacgaacag gctgaccgca
     5401 taggcgataa agaacaccag caacagcagc ggcagcaccg ccagcgattg cacgccgaga
     5461 gtcgcatagg accagcacat gacgatcagc atgcccaccg aggcga
//
LOCUS       DATIHC010000457         6233 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8324, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000457 DATIHC010000000
VERSION     DATIHC010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6233)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6233
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8324"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..159
                     /locus_tag="VLF16_07435"
     CDS             <1..159
                     /locus_tag="VLF16_07435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1285 domain-containing protein"
                     /protein_id="HSX70752.1"
                     /translation="PYLHVRRNLEALVHRNVFYQLVDLAVERQIDGRTWLGVWSGGEF
                     FPIGPQPE"
     gene            228..506
                     /locus_tag="VLF16_07440"
     CDS             228..506
                     /locus_tag="VLF16_07440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70753.1"
                     /translation="MTQKEDLSREVQVHLPLGHLLVMWDILSSKLSCVPINESFTEEE
                     KRAVWSLEDLFERVLKEHGVSSRPQPEWDELVGRAREFAKTLPADFLD"
     gene            complement(544..909)
                     /locus_tag="VLF16_07445"
     CDS             complement(544..909)
                     /locus_tag="VLF16_07445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSX70754.1"
                     /translation="MSNLNTVELKTLVPARDFARSKDFYQALGFQMPWSDDQLAYLRH
                     GSCSFLLQNFYVREQAENFVMHLLVEDVDAWHRHLSDSGLAERFEVRMGELVDQPWGM
                     REFVLFDPSGLLWHIAQNI"
     gene            complement(923..1540)
                     /locus_tag="VLF16_07450"
     CDS             complement(923..1540)
                     /locus_tag="VLF16_07450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70755.1"
                     /translation="MTLREELAAFYRRCGFSDTADRQACTVPVYTGCLLVPLPNIETR
                     HVYLKYHDLHHVATGYSTGRIGEGEVSAWELGTGSMRNSPLLGTMNLIALSTGLVLEP
                     RRMWRAFRRGCRSRNLYPLAMREKIDGDHWVDLPALRHDLLESRRDPLPLPLRALEFG
                     SYAAVAMLIHALIAIPAMCTRVVTDIGLGYSLIQAVKPVKRTDLY"
     gene            complement(1556..3169)
                     /locus_tag="VLF16_07455"
     CDS             complement(1556..3169)
                     /locus_tag="VLF16_07455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019726526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BatD family protein"
                     /protein_id="HSX70756.1"
                     /translation="MKRLLCALLLCLLGTQLWAATFSATVDRARLKEGETFDLILESD
                     DATQFGMPDLAPLDPLFERISTRQENNMSNQGSSTRWIVTLLPKETGFVVVPPLTLGD
                     ARSQPITLQVDESESAGNGKLAPIFIDASLDQESVYVQAQAMLTLRIYHSVSLYDDSS
                     LTPLSIPGARVEQLGEPRTFETDVNGVRHGVIELRYAIFPQQSGTLTIPAQEFSATPV
                     LRDHNYNLFGPRPGRLTRVKSPEIPLTVKPRPAAWPADAPWLPARALSLSEAWNPEPI
                     NPSVGDSLTRSIMLRAEGLSSAQLPPLPTQDSPGLRRYPDQPQQRNEINDKGLIGSRE
                     ESTALVPSQSGRVDLPEVRVRWWNTDEDRLETASLPARTLDVARNPALEVEAPVSVPA
                     PLAQQNPQLWAWQLACALLALTTALGFGLWWHARRQPAILPTAQTGPSPRTLLDDLKR
                     ACQANDPHATRQALDAWARQQPETLADMAARFAPLSDALDGLNGALYSETGHQWQGES
                     LWKAIRSLPPLEAVANPQEGSALPPLYPR"
     gene            complement(3166..4926)
                     /locus_tag="VLF16_07460"
     CDS             complement(3166..4926)
                     /locus_tag="VLF16_07460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008570139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HSX70757.1"
                     /translation="MEMLWPHWLRPFWLLLLPLLGWLLWLLWHRERRSGRWQQLLPAA
                     FQAVLLTGGRARSNKLPWVALGLAWLLAVLALLGPSWQRLEQASQKRADPLVVLLELT
                     PAMLATDAMPNRLEQARRKLLDLLQARNDAQTAIVVYAGSAHTLVPLSDDLATARNLL
                     EAIRPSIMPEPGRRADLAVAKALALLEQGAQGRGRLLLIGSELSDEERQGIRAALGDR
                     GERLAILGVGTAQGAPIRGEDGSLVKGADGAILVPRLDGAGLRRFAGELGGHYRKARL
                     DDSDLQGLDLLDGPQQLREGAEPTRLAAWADQGHWLLLPLLLIAACAGRRGWLFCLPL
                     LLCLAPQPSYALDWDDLWLRPDQQGQRLLQADEPKRAAERFEDPQWQGEALYRAGDYA
                     AAAERFARSDSAAAHYNRGNALARSNELEAAVDAYEQALERQPELQQAQQNKALVEQL
                     LRQQQQQQSQQQGQDSPKEDAQPNPQNGQPQPGAGQSRPEQDSSEAPAQPQPSQDAQQ
                     GEAQQAPRPGPQNGQGQSAPQEPGQGQSENPSNGGVAPLDGEQRDALEQWLRQIPDNP
                     GELLRRKFLYEQQQRQEQSR"
     gene            complement(4926..5945)
                     /locus_tag="VLF16_07465"
     CDS             complement(4926..5945)
                     /locus_tag="VLF16_07465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012700501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HSX70758.1"
                     /translation="MFEFAWPWVFLLAPLPWLLRALLPAADSGEAALRVSFLAELEGL
                     SGRRARAHLPAWRQQAPFVLLWMLLVIAAARPEWVGEPLPLPTSGRDLLLAVDVSGSM
                     DHDDMEWEGESIQRLELVKRLFGDFVEDRRGDRIGLILFGSRAYLQSPLTFDRRTVRT
                     WLDEALINIAGPQTAIGDAIGLAVKRLRQRPADSRVLVLITDGANNGGEIEPKVAARL
                     AAEQRVKIYTIGIGSDPQQSGILGMLGLNPGVDLDEATLIDIAEQTGGSYFRARTTEE
                     LRQIEETLDRLEPAAQLPTRARPAEALYPWPLGAALLVSLLLVARELWPQRWQALTSR
                     LGRSA"
     gene            complement(5938..>6233)
                     /locus_tag="VLF16_07470"
     CDS             complement(5938..>6233)
                     /locus_tag="VLF16_07470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002554478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4381 domain-containing protein"
                     /protein_id="HSX70759.1"
                     /translation="AELASLVRPYDGQHAGPWLQQLNALLKRLARAHYPHDNSHVLSG
                     RAWLAFLDNRCPAAGLTRWMVLVEGGYRGHCSLDDKAINGLNQAVDTWIRKHV"
BASE COUNT          874 a         2034 c         2302 g         1023 t
ORIGIN      
        1 ccctacttgc atgtgcggcg caacctggag gcgctggtgc accgcaacgt gttctaccag
       61 ttggtggacc tggcggtgga gcggcagatt gatggccgga cctggctcgg cgtctggagc
      121 gggggggagt tcttcccgat cgggccgcag ccggagtagg ccgctcgacc tgggattgcc
      181 gcctgagccg ccgctagtcc tcacgatgcg ggataaggag atatcgggtg acacagaaag
      241 aagatttgtc cagggaagta caagtccacc ttcctctcgg ccatctccta gtgatgtggg
      301 acatcctctc tagcaagctt tcctgcgtgc cgatcaatga gtccttcact gaagaagaga
      361 aacgcgccgt ttggtctctg gaggatttgt tcgaacgagt cctaaaggaa cacggcgttt
      421 cctcaaggcc tcaacccgaa tgggatgaac tcgttgggag ggcaagagaa tttgctaaga
      481 cccttccggc agattttctg gattaatcgg cgcgcatgcg tgcaccgctg ctagcggcga
      541 cccttaaata ttctgcgcga tatgccagag caagccgctg gggtcgaaca gcacgaattc
      601 gcgcatgccc cacggctggt ccaccaactc gcccattcgc acttcaaagc gctcggccag
      661 gcccgagtcg ctcaggtgcc ggtgccaggc gtccacgtct tccaccagca ggtgcatgac
      721 gaagttctcc gcctgctcgc gcacgtagaa gttctgcagc aggaaactgc agctgccgtg
      781 gcgcaggtag gccagctgat cgtcgctcca gggcatctgg aaacccagcg cctggtagaa
      841 gtccttcgag cgggcgaagt cccgggccgg caccagcgtc ttgagttcaa cggtgttgag
      901 gttgctcatc gagcgttccc tctcaataga ggtcggtgcg cttcaccggc ttgaccgcct
      961 ggatgaggct gtagcccagg ccgatgtcgg tgaccacgcg ggtgcacatg gcgggaatgg
     1021 cgatcagcgc gtggatcagc atggccaccg ccgcgtagct gccaaactcg agcgcgcgca
     1081 ggggcaacgg cagcgggtcg cggcggctct ccagcaggtc gtggcgcagg gccggcaggt
     1141 cgacccagtg gtcgccgtcg atcttctcgc gcatcgccag tggatacagg ttgcggctgc
     1201 gacagccgcg gcggaaggcg cgccacatgc gcctgggctc cagcaccagg ccggtggaga
     1261 gggcgatcag gttcatggtg ccgagcagcg gcgagttgcg catcgagccg gtgcccagct
     1321 cccaggcgct gacctcgccc tcgccgatgc gcccggtgct gtagccggtc gcgacgtggt
     1381 gcaggtcgtg gtacttcagg tagacgtggc gggtctcgat gttcggcagc ggtaccagca
     1441 ggcaaccggt atacaccggc acggtacagg cctggcggtc ggcggtgtcg ctgaagccgc
     1501 agcggcggta gaaggcggcg agttcttccc tgagcgtcat gcgtgtctct cctgatcagc
     1561 gcgggtacag cggcggcagc gcgctgcctt cctgcgggtt agccaccgcc tccagcggcg
     1621 gcaggctgcg gatcgccttc cacaggctct cgccctgcca ctggtggccg gtctcgctgt
     1681 acagggcgcc attgaggccg tcgagggcgt cggaaagcgg cgcgaagcgg gcggccatgt
     1741 cggccagggt ctccggctgc tggcgcgccc aggcatccag ggcctggcgg gtggcgtgcg
     1801 ggtcgttggc ctggcaggcg cgcttgaggt cgtcgagcag ggtgcgcggg ctggggccgg
     1861 tctgggcggt cggcaggatg gccggctggc gccgggcgtg ccaccacagg ccgaagccca
     1921 gggcggtggt cagggcgagc agggcacagg ccagttgcca ggcccagagc tgcggattct
     1981 gttgcgccag cggcgccggc acgctcaccg gcgcctcgac ttccagcgcg gggttgcgcg
     2041 ccacgtccag ggtgcgcgcc ggcaggctgg cggtttccag gcgatcctcg tcggtgttcc
     2101 accaccgcac gcggacttcc ggcaggtcga cgcggccgct ctggctcggc accagcgccg
     2161 tgctttcttc gcggctgccg atcaggccct tgtcgttgat ctcgttgcgc tgctgcggct
     2221 ggtccgggta gcggcgcagg cccgggctgt cctgggtcgg caatggcggc agctgggcgc
     2281 tggacaggcc ctcggcgcgc agcatgatgc tgcgggtcag cgaatcgccg acgctggggt
     2341 tgatcggctc gggattccac gcctcgctca ggctcagcgc gcgggccggc agccagggcg
     2401 cgtcggccgg ccaggcggcg gggcgcggtt tgaccgtgag cgggatttcc ggcgacttga
     2461 cgcgggtcag gcgtccgggg cgcgggccaa agaggttgta gttgtggtcg cgcagcaccg
     2521 gcgtggcgct gaattcctgc gcgggaatcg tcagcgtgcc gctctgctgc gggaagatgg
     2581 cgtagcgcag ctcgatcacg ccgtggcgta cgccgttgac gtctgtctcg aaggtgcgcg
     2641 gttcgcccag ctgttcgacg cgtgcgccgg ggatgctcag cggggtcagg ctgctgtcgt
     2701 cgtacagcga taccgagtgg tagatgcgca gggtcagcat cgcctgggcc tgcacgtaga
     2761 cgctttcctg gtccaggctg gcgtcgatga agatgggcgc cagcttgccg ttgccggcgc
     2821 tttcgctctc gtccacctgc agggtgatcg gctggctgcg ggcatcgccc agcgtcagcg
     2881 gcggcaccac cacgaaaccc gtctccttgg gcagcagggt gacgatccag cgcgtgctgg
     2941 agccctggtt cgacatgttg ttttcctggc gcgtgctgat gcgctcgaac agcggatcga
     3001 gcggggccag gtcgggcatg ccgaactgcg tggcgtcgtc cgattcgagg atcaggtcga
     3061 aggtctcgcc ttccttcagg cgggcgcggt cgacggtggc ggaaaaggtg gcggcccaca
     3121 gctgcgtgcc gagcaggcag aggaggaggg cacagagcag gcgtttcatc gggactgttc
     3181 ctggcgctgc tgttgttcgt agaggaattt gcgccgcagc agctcgcccg gattgtcggg
     3241 gatctgccgc agccattgtt cgagcgcgtc gcgctgctcg ccgtccagcg gcgcgacgcc
     3301 gccgttcgag ggattctcgg actggccctg gccgggctcc tgcggggccg actggccctg
     3361 gccgttctgt gggcccggcc gcggggcttg ctgcgcttcg ccttgttggg cgtcctggga
     3421 aggctgcggt tgcgccgggg cctcgctgga atcctgttcg gggcgcgact ggcccgcgcc
     3481 gggttgcggc tggccgttct gtggattcgg ctgcgcatcc tcctttggcg agtcctggcc
     3541 ctgttgctgc gactgttgct gttgctgctg gcgcagcaac tgctcgacca gggccttgtt
     3601 ctgctgcgcc tgttgcagct ccggctggcg ctccagcgcc tgctcgtagg cgtcgacggc
     3661 ggcctccagc tcgttgctcc tggccagggc gttgccgcgg ttgtaatggg ccgcggcgct
     3721 gtcggagcgg gcgaagcgct cggcggcggc ggcatagtcg ccggcgcggt acagcgcctc
     3781 gccctgccac tgcgggtcct cgaagcgctc ggcggcgcgc ttgggctcgt ccgcctggag
     3841 caggcgctgg ccctgctggt cggggcgcag ccagaggtcg tcccagtcca gcgcatagct
     3901 cggttgcggc gccaggcaca gcagtagcgg caggcagaac agccagccgc ggcggccggc
     3961 acaggcggca atcagcaaca acggcagcaa cagccagtgg ccctggtcgg cccaggcggc
     4021 caggcgggtc ggttccgcgc cttcgcgcag ctgttgcgga ccgtcgagca ggtcgaggcc
     4081 ctgcaggtcg ctgtcgtcca gacgcgcctt gcgatagtgc ccgcccagtt cgccggcgaa
     4141 gcggcgcaga ccggcgccgt ccaggcgcgg gaccaggatc gcgccgtcgg cgcccttgac
     4201 caggctgccg tcctcgccgc ggatcggcgc gccctgggcg gtgccgacgc cgaggatggc
     4261 caggcgttcg ccacggtcgc cgagggcggc gcggatgccc tggcgttcct catcgctcag
     4321 ttcgctgccg atcagcagca gccgtccgcg tccctgggcg ccctgttcca gcagcgccag
     4381 cgccttggcc acggccagat cggcgcggcg acccggctcg ggcatgatcg aggggcggat
     4441 cgcctccagc aggttgcgcg ccgtggccag gtcgtcggac agcggcacca gggtgtgggc
     4501 gctgccggca tagacgacga tggccgtctg cgcgtcgttg cgcgcctgca gcaggtccag
     4561 cagcttgcgc cgggcctgtt ccaggcggtt cggcatggcg tcggtggcga gcatggcggg
     4621 ggtgagttcg agcagcacca ccagcgggtc ggcgcgcttc tggctggcct gctccagacg
     4681 ctgccaactg ggcccgagca gggccagcac ggcgagcagc caggccaggc cgagggcgac
     4741 ccacggcagc ttgttgctgc gcgcgcgccc gccggtcaac aacaccgcct ggaaggcagc
     4801 cggcaacagt tgctgccagc gcccgctgcg tcgttcgcgg tgccacagca gccacagcag
     4861 ccagccgagc agcggcagca ggagcagcca gaatgggcgc agccagtgcg gccagagcat
     4921 ctccatcagg ccgacctccc gagccgcgag gtcagcgcct gccagcgctg cggccacagc
     4981 tcgcgcgcca ccagcagcag gctgaccagc agcgccgcgc ccagcggcca gggatacagc
     5041 gcctcggcgg gccgcgctcg ggtcggcagc tgggcggccg gttccaggcg gtcgagggtc
     5101 tcctcgatct gccgcagctc ttcggtggtg cgggcgcgga aatagctgcc gccggtctgc
     5161 tcggcgatgt cgatcagcgt ggcttcgtcc aggtccacgc ccgggttcag cccgagcatg
     5221 ccgaggatgc cgctctgctg cgggtcggag ccgatgccga tggtgtagat cttcacccgc
     5281 tgctcggcgg ccaggcgtgc ggcgaccttg ggttcgatct cgccgccgtt gttggcgccg
     5341 tcggtgatca gcaccagcac gcggctgtcg gccgggcgct ggcgcaggcg cttgaccgcc
     5401 aggccgatgg cgtcgccgat ggcggtctgc ggcccggcga tgttgatcag cgcctcgtcc
     5461 agccaggtgc gcacggtgcg tcggtcgaag gtcagcggcg actgcaggta ggcgcggctg
     5521 ccgaacagga tcaggccgat gcggtcgccg cggcggtcct cgacgaaatc gccgaacagg
     5581 cgcttgacca gctccaggcg ctggatgctt tcgccttccc attccatgtc gtcgtggtcc
     5641 atggagccgg acacgtccac cgccagcaac aggtcgcggc cgctggtagg cagcggcagc
     5701 ggttcgccga cccattcggg ccgggccgcg gcgatgacca gcaacatcca cagcaggacg
     5761 aagggcgcct gctggcgcca ggccggcaga tgggcacggg cgcggcggcc gctgaggcct
     5821 tccagttcgg cgaggaaact gacccgcagc gccgcctcgc cgctgtccgc cgccggcaac
     5881 agggcgcgca gcagccaggg cagcggggcg agcaggaaga cccagggcca ggcgaactca
     5941 aacatgcttg cggatccagg tgtcgacggc ctggttgagg ccgttgatgg ccttgtcgtc
     6001 gaggctgcaa tggccgcggt agccgccttc caccagcacc atccagcggg tcaggccggc
     6061 ggccgggcag cggttgtcga ggaaggccag ccaggcgcgc ccactgagca catggctgtt
     6121 gtcgtgcgga tagtgggcac gggccaggcg cttgagcagg gcgttgagct gctgcagcca
     6181 ggggccggca tgctgcccgt cgtagggacg caccaggctc gccagctcgg cca
//
LOCUS       DATIHC010000458         6677 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_41105, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000458 DATIHC010000000
VERSION     DATIHC010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6677
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41105"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..949
                     /locus_tag="VLF16_07475"
     CDS             <1..949
                     /locus_tag="VLF16_07475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015476875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CmpA/NrtA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HSX70760.1"
                     /translation="LGLGGPAIELAILMGLCQNGQAINLSQPLMQAGVTSAEALAARV
                     RQNGAKLTLAQTFPTGTHAMWLYYWLAAQGIHPLEDVHTVVVPPSQMVAHLRAARIDG
                     FCAGGPWGALAVEEGQGFTLATSQDIWADHPEKVLGVTREFVEQYPNTARALTMAVLE
                     ASRFIDESEENRSGTAQLISSRDYVDAPLSAIQPRFLGQYEDGLGHAWLDAHPLRFFA
                     DGEVNMPWLSDGIWFLTQFRRWGLLKDDPDYLAIARRIHQLEIYRSAAEALGIAVPEA
                     QMRRSTLLDGSVWDGSDPAGYARSFAIHARTDGPAAVNL"
     gene            970..1548
                     /locus_tag="VLF16_07480"
     CDS             970..1548
                     /locus_tag="VLF16_07480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANTAR domain-containing response regulator"
                     /protein_id="HSX70761.1"
                     /translation="MLRILLINDTPKKVGRLKSALVEAGFEVVDESGLTIDLPERVEA
                     VRPDVVLIDTESPGRDVMEQVVLVTRDQPRPIVMFTDEHDPQVMRQAIQSGVSAYIVE
                     GIQTERLQPILDVAMARFESDQALRAQLQARDAQLAERKRIELAKGLLMKMKSCNEED
                     AYTLMRRQAMSRQQKLIQVAEQIIAMHDMLGG"
     gene            1685..2035
                     /locus_tag="VLF16_07485"
     CDS             1685..2035
                     /locus_tag="VLF16_07485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70762.1"
                     /translation="MTKSIVAEDSDWLAELSAKESFFSNTMDWLIDAGYIWSHEKPKA
                     FPAQYLGCILTTKALEALKTTLPSLSGESLGQSLKEAAAAGVLDTIKGLTNEVLSKGV
                     HMAINAAQSWSSTA"
     gene            2207..3559
                     /locus_tag="VLF16_07490"
     CDS             2207..3559
                     /locus_tag="VLF16_07490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017677182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HSX70763.1"
                     /translation="MNERNLLAEADRRALAYFDGTPQRRVYPDAAAIAVLAEFDHPLP
                     DNGRAAEQVLQQLDEIGSPATVASNGPRYFGFVIGATLPAAAAAERLVLAWDQCASSF
                     DNSPAADRLEKVAGRWVCEALGLPPQSAVGFGTSATACTLACLSAARRTLLARLGWDF
                     DAHGLMGAPEIRVVLAETAHITVKKALRVLGFGMNRLHYAPVDEHGRIDPARLPALDE
                     RTLLILQAGEVNTGEFDRFAELIPRARQAGAWVHVDGAFGLWARASSSARLAAGVELA
                     DSWTTDGHKWLNTPYDSAMAICRDADALAAAMNSDAAYATASRDAQKNLTLEFSRRAR
                     GVAVWAALASLGRGGLRELIDRHIRQAGELGETLRADGYQVLNRVVLNQVLVRGDSDE
                     QTIAIREAAQASGEVWFGPTVWQGRPAFRLSVSSWRTTDADIRLLADLLMRLRRRFGG
                     "
     gene            3708..4805
                     /locus_tag="VLF16_07495"
     CDS             3708..4805
                     /locus_tag="VLF16_07495"
                     /inference="COORDINATES: protein motif:HMM:NF020367.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide lyase family 7 protein"
                     /protein_id="HSX70764.1"
                     /translation="MSGLSQRSIPSSNRRRALFGSALLGSLLLGEAHADLYRSVPPGG
                     NFALEDWNITIPADADGGSSGDALILRPDLIAGPQGYQGRWFNTDKNDGAMTFWAPLN
                     GATIGGSSSPRSELREFPLIWNGAGSSVLDAMVKVVQVPSDGMVIVGQVHGHGSPPLI
                     MIYYLYDHAAGTGQVIAKLQETPIQGPPYSKHVLATGVDLGETFSYQLKVENNRAMAS
                     VDGGEPARMAMSPAWDGENFYFKAGAYLHMHGDSASEGGRVKFYRLAASHPNDGLLIN
                     SRAILPPARAGSPYLEQLYSTGGRGGATWKLVSGHPPAGLHLAPDGVLSGTPEARAVS
                     ERAHWFMVQVSDVNGSTHAKTFSIVIRPAAE"
     gene            4927..6183
                     /gene="alaC"
                     /locus_tag="VLF16_07500"
     CDS             4927..6183
                     /gene="alaC"
                     /locus_tag="VLF16_07500"
                     /EC_number="2.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine transaminase"
                     /protein_id="HSX70765.1"
                     /translation="MADNAKRRFARIDRLPPYVFNITAELKMAARRRGEDIIDFSMGN
                     PDGATPPHIVEKLVQVAQREDTHGYSTSRGIPRLRRAISRWYKDRYAVEIDPESEAIV
                     TIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVPGVDFFAEL
                     ERAIREAIPKPKMMILGFPSNPTAQCVELDFFERVVALAKQYDVLVVHDLAYADIVYD
                     GWKAPSIMQVEGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELVGALARIKSYHDYGT
                     FTPLQVAAIAALEGDQQCVRDIAEQYRERRNMLVKGLHEAGWMVEKPKASMYIWAKIP
                     EPYAHLGSLEFAKKLLLEAKVCVSPGLGFGDYGDDHVRFALIENQDRTRQAIRGIKAM
                     FRADGLIEAPAAKPKRATGKVKPESA"
     gene            complement(6223..6609)
                     /locus_tag="VLF16_07505"
     CDS             complement(6223..6609)
                     /locus_tag="VLF16_07505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015477419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70766.1"
                     /translation="MHHKLMTILLLALLAGCAQPQVEQPKANGAYLVIEGGEAWAVLV
                     RDGKRIEEAGRVLDVVRLQGQESSISASYLIDTPNCGRLRWLTERGGEGEVTRVALGG
                     NEARERPGCTIASDLSRAWTALDYSS"
BASE COUNT         1178 a         2334 c         2109 g         1056 t
ORIGIN      
        1 cctcggcctc ggcgggccgg ccatcgagct ggccatcctc atgggcctgt gccagaacgg
       61 ccaggccatc aacctgtcgc agccgctcat gcaggccggc gtgaccagtg ccgaggcact
      121 cgccgcacgc gtgcgccaga acggtgcaaa actcaccctc gcccagacct tccccaccgg
      181 cacccacgcc atgtggctgt actactggct ggctgcccag ggcattcacc cattggaaga
      241 cgtccatacc gtggtggtgc cgccgtcgca gatggtcgct cacctgcgcg ccgcacgcat
      301 cgacggcttc tgcgctggcg gcccctgggg cgctctggcg gtcgaggaag gccagggctt
      361 caccctggcc accagccagg acatctgggc cgaccacccg gagaaggtgc tgggcgtgac
      421 ccgcgagttc gtcgagcagt accccaacac tgcccgcgcg ctgaccatgg ccgtgctcga
      481 ggccagccgc ttcatcgacg aaagcgagga gaaccgcagc ggcaccgcgc agctgatcag
      541 cagccgcgat tatgtcgatg cgccgctctc ggcgatccag ccgcgcttcc tcggccagta
      601 cgaggacggc ctcggccacg cctggctgga cgcccacccg ctgcgtttct tcgccgacgg
      661 cgaggtgaac atgccctggc tgtccgacgg catctggttc ctcacccagt tccgccgctg
      721 gggtctgctc aaagacgacc cggactacct ggccatcgcc cgccgcatcc accagctgga
      781 gatctaccgc agcgccgccg aggccttggg catcgccgtg cccgaggcgc agatgcgccg
      841 ctccacgctg ctcgacggca gcgtctggga tggcagcgac ccggccggct acgcccgctc
      901 cttcgccatc catgcccgca ccgacggccc cgccgccgtc aacctgtaac ggaccgagat
      961 acaagcacga tgctgcgcat actcctgatc aacgatacgc cgaagaaggt cggccgcctg
     1021 aagagcgccc tggtggaggc cggcttcgag gtggtcgacg agtccgggct gaccatcgac
     1081 ctgcccgagc gggtcgaggc ggtgcgcccg gacgtggtgc tgatcgacac cgagtcgccg
     1141 ggccgcgacg tgatggagca ggtggtgctg gtgacgcgcg accagccgcg ccccatcgtc
     1201 atgttcaccg acgagcacga cccccaggtg atgcgccagg ccatccagtc cggggtcagc
     1261 gcctacatcg tcgagggtat tcagaccgag cgcctgcagc cgatcctcga cgtggccatg
     1321 gcccgcttcg agagcgacca ggccctgcgc gcccagctgc aggcccgcga cgcacagctg
     1381 gccgagcgca aacgcatcga gctggccaag ggtctgctga tgaagatgaa gagctgcaac
     1441 gaggaagacg cctacaccct gatgcgccgc caggccatga gccgccagca gaagctgatc
     1501 caggtggccg aacagatcat cgccatgcac gatatgcttg gaggctagtt gaatctgctt
     1561 ccgaggaaat ctcatgcaac caagtaacat tgagcggttc gatcaagcca caggcttgat
     1621 cttcgcacag ctgtactctg agtttcctcg gcgagtagct cttacgtctg gagtcctaga
     1681 tccgatgact aagagcattg tcgctgagga ctccgattgg cttgcagagt tgagtgccaa
     1741 agaaagcttc ttcagcaata caatggattg gctgattgac gccggatata tctggagcca
     1801 tgaaaagcca aaggcatttc ccgcccaata tctcggctgc atcctgacca cgaaggcctt
     1861 ggaagctctc aagacaacac tcccctccct atccggagaa agtcttggac aatctctcaa
     1921 agaggcagct gccgctggcg tactcgatac cataaaagga ctgaccaacg aagtgttgag
     1981 caagggggtt catatggcga ttaacgcggc acaatcttgg agctcaacag cctaattcga
     2041 aaacgagacg cggacggtgg aactgtaccg cctgcgggca aagctgtact ggtccactca
     2101 agccttaccg aaccactgta atgcccagct tggccggcgc ctgtatctgc cgccacgcgc
     2161 cgcgcctggc tagggtagaa ggcccttccc tggccgaggc cggatcatga acgaacgcaa
     2221 tctgctggcc gaggccgacc gccgcgccct cgcctatttc gacggcacac cccaacgccg
     2281 ggtctacccg gatgccgcgg ccatcgccgt cctcgcggag ttcgaccatc ccttgccgga
     2341 caacggtcgg gccgccgagc aggtcctgca gcagctcgac gagattggct cgccggccac
     2401 ggtggcgagc aacgggccgc gttacttcgg cttcgtcatc ggcgctacgc tgccggccgc
     2461 cgcggccgcc gagcgcctgg tgctggcctg ggaccagtgc gcctcgtctt tcgacaactc
     2521 acccgcggcc gaccgcctgg agaaggtcgc cgggcgctgg gtctgcgaag ccctgggact
     2581 gccgccgcag agcgcggtgg gcttcggtac cagcgccacc gcctgcaccc tggcctgcct
     2641 gtccgccgct cgccgcacac tgctggcgcg cctgggctgg gacttcgacg cccacggcct
     2701 gatgggcgcc ccggaaatcc gcgtggtgct cgccgagacg gctcacatca cggtgaagaa
     2761 ggccctgcgc gtgctcggct tcggcatgaa tcgcctgcac tacgcgccgg tggacgagca
     2821 cgggcgcatc gatccggcgc gcctgccggc cctggacgaa cgcaccctgt tgatcctgca
     2881 ggccggagag gtcaacaccg gcgaattcga ccgcttcgcc gagctgattc ccagggcccg
     2941 ccaagccggc gcctgggtgc atgtcgacgg cgccttcggc ctgtgggcca gggcctcgtc
     3001 ttccgcgcgc ctggccgccg gagtggaact ggccgacagc tggaccaccg atggccacaa
     3061 gtggctgaac acaccgtacg acagcgccat ggccatctgc cgcgacgccg acgccctggc
     3121 cgcggcgatg aacagcgatg cggcctatgc caccgcgagc agggacgcgc agaagaatct
     3181 gaccctggag ttctcccgtc gcgcccgtgg cgtggccgtc tgggcggccc tggccagcct
     3241 gggtcgcggc ggcctgcgtg aactcatcga ccgtcatatc cgccaggccg gcgaactggg
     3301 cgagacgctg cgcgccgacg gctaccaagt gctcaatcgg gtcgtgctca accaggtgct
     3361 ggtacgcggc gactcggacg agcagaccat tgccatacgc gaggcggccc aggcctccgg
     3421 cgaggtctgg ttcggcccga ccgtctggca gggccgtccg gcgtttcgcc tcagcgtttc
     3481 ctcctggcgc accacggacg ccgacatccg gctgctggcc gacctgctga tgcgtctacg
     3541 tcgccgtttc ggcggctgaa atggcatcga actaccggcg cggaacgagg gtctttccca
     3601 ggtccgcgac tggcggacgc ccacccacac ggggttcgtc atgccgacgt ttcgaagggg
     3661 tgaagtcttg aacgatgcgt gtcgtccctc ggccaagagg acccagcatg tcaggacttt
     3721 ctcaacgttc catcccttcg tcgaaccggc gccgcgcgct gttcggctcc gccctgctcg
     3781 gcagtctgct gctgggcgag gcgcacgccg acctgtatcg cagcgtcccg ccgggcggca
     3841 acttcgccct tgaagactgg aacatcacca tccccgccga cgcagacggc ggtagctcgg
     3901 gcgatgcgct catcctgcgt cccgacctga tcgcgggccc gcagggctat cagggccgat
     3961 ggttcaacac cgacaagaac gacggtgcga tgaccttctg ggctccgctc aacggcgcca
     4021 ccatcggcgg ctccagcagc ccccgctcgg agctgcgcga attcccgttg atctggaacg
     4081 gcgccggcag ctcggtgctg gatgccatgg tcaaggtcgt ccaggtgccc agcgacggca
     4141 tggtcatcgt cggccaggtc cacggccacg gcagcccgcc cctgatcatg atttattacc
     4201 tctacgacca cgccgccggc accggccagg tgatcgccaa gctgcaggaa acgccgatcc
     4261 agggcccgcc ctacagcaag catgtgctgg ccaccggagt cgatctggga gaaaccttca
     4321 gctatcagct caaggtcgag aacaaccggg ccatggcctc ggtcgacggc ggcgaacccg
     4381 cgcgcatggc catgagtccg gcctgggacg gcgagaactt ctacttcaag gccggcgcct
     4441 acctgcacat gcacggcgac agcgcgagcg aaggcggccg ggtgaagttc taccgcctgg
     4501 ccgccagcca tcccaacgat ggcctgctga tcaacagccg agcgatattg ccgcccgcgc
     4561 gcgcgggaag cccctacctg gagcagttgt acagcacagg tggacgcggc ggcgcgacct
     4621 ggaaactggt cagcggccat ccgccggcgg ggctgcacct ggcgcctgac ggcgtgctga
     4681 gcggcacccc cgaagccagg gcggtttcgg agcgggctca ctggttcatg gtgcaggtga
     4741 gcgacgtcaa cggcagcacc catgccaaga ccttctcgat tgtgattcgc ccagccgccg
     4801 agtgaacgca gcgcagcacg gggctcgaca aggccccgtc gctgcgttta tcgtcgccgc
     4861 cgggccacac gcatgtggcc gacgtcgctc ggacggttcc gggcgcttac gtacctcgag
     4921 gaagccatgg ccgacaacgc caagcgccgc tttgcgcgca tcgatcgtct ccccccctac
     4981 gttttcaaca tcaccgccga actgaagatg gccgcccgtc gccgtggcga ggacatcatc
     5041 gacttcagca tgggcaatcc ggacggcgcc acgccgccgc acatcgtcga gaagctggtg
     5101 caggtcgccc agcgcgaaga cacccacggc tactccacct cccgcggtat tccgcgcctg
     5161 cgccgcgcca tctcacgctg gtacaaggat cgctatgccg tggagatcga cccggaaagc
     5221 gaggccatcg tcaccatcgg ctccaaggaa ggcctggcgc acctgatgct ggccactctg
     5281 gaccacggcg acaccgtgct ggtgcccaac cccagctacc ccatccacat ctacggcgcg
     5341 gtgatcgccg gcgcccaggt gcgctcggtg ccgctggtgc cgggcgtgga cttcttcgcc
     5401 gaactggagc gagcgattcg cgaggccatt cccaagccga agatgatgat cctcgggttc
     5461 ccctccaacc ccaccgccca gtgcgtggag ctggacttct tcgagcgcgt ggtggcgctg
     5521 gccaagcagt acgacgtgct ggtggtgcac gacctggcgt acgccgacat cgtctacgac
     5581 ggctggaagg cgccgtcgat catgcaggtg gaaggcgcca aggacatcgc cgtggagttc
     5641 ttcaccctgt ccaagagcta caacatggcg ggctggcgca tcggcttcat ggtcggcaac
     5701 ccggagctgg tcggcgccct ggcgcggatc aagagctatc acgactacgg caccttcacg
     5761 cccctgcagg tggcggccat cgccgcgctg gaaggcgacc agcagtgcgt gcgcgatatc
     5821 gccgagcagt accgcgagcg ccgcaacatg ctggtcaagg gcctgcacga ggccggctgg
     5881 atggtggaga agcccaaggc ctccatgtac atctgggcca agattcccga gccctatgcg
     5941 cacctgggct cgctggagtt cgccaagaag ctgctgctgg aagccaaggt ctgcgtctcg
     6001 ccgggcctgg gcttcggcga ctacggcgac gatcacgtgc gcttcgccct gatcgagaac
     6061 caggaccgta cccgccaggc catccgcggc atcaaggcga tgttccgcgc cgatggcctg
     6121 atcgaggcgc ccgccgccaa gccgaagcga gcgaccggca aggtcaagcc cgaatcggcg
     6181 tgaaacgaaa aaggccccga catgcgtcgg ggccttttca catcagctcg aataatccag
     6241 cgccgtccag gcccgcgaca ggtcgctggc gatggtgcag ccggggcgct cgcgggcctc
     6301 gttgccgccc agcgcgacgc gggtgacctc gccttcgccg ccgcgctcgg tcagccagcg
     6361 caggcgaccg cagttgggcg tatcgatcaa gtagctggcg gaaatgctcg actcctgccc
     6421 ctgcagcctg accacatcca gcacccggcc ggcctcctcg atgcgcttgc cgtcacgcac
     6481 cagcacggcc caggcctcgc cgccctcgat caccagatag gcgccattgg ccttgggctg
     6541 ctcgacctgg ggctgggcac agcccgccag caaggccaac agcagaattg tcatcagctt
     6601 gtggtgcata taagcagctc ctgttacggc tccggttcgg tgatccaggc gacactcggg
     6661 ctgtactatt atccagt
//
LOCUS       DATIHC010000459         3085 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_33991, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000459 DATIHC010000000
VERSION     DATIHC010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3085
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33991"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1618
                     /locus_tag="VLF16_07510"
     CDS             <1..1618
                     /locus_tag="VLF16_07510"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="thioesterase domain-containing protein"
                     /protein_id="HSX70767.1"
                     /translation="GWSEALQNWASSAAAQAELDAWCSRLSGPALALPRELDGTSASH
                     GDKREVRLALDVAETKRLLQAPAQLGVRIDALLLTALTRALCRWSGQPGLRVNLEGHG
                     REALAGELDLSRTVGWFTSLYPLQLPQLDAAAEQLQQVQQRLQQVEHGGQGYGVLRWL
                     GSAAAQAALAAVPSAEVIFNYLGQYQAGAAADWFRPASGGGAAVAANNPLAARLAVNG
                     QVFDGQLQLSWEYAANQYRSETIEALAADYRRELLGLLELARGQLAQGPSPLLRLTRQ
                     EAGAAPVFCPHPVTGRVTGYQPLAARLDGVREVFGLQCRSFLDPSWRDASLGEMADAY
                     LAALLKQQPQGPYRLVGWSLGGSLALELAARLEARGEEVAFLGLLDCYVPGTEIAGDD
                     ARHPQARAKLVEHLQLLAPELPAKAWDGLFEQLLQLEPLDWPRACGSWFAGQPLDGMT
                     RQSLEELLFAWALEQHMRRLCAGYSLPKVKVQPHCWWAAQPVGRAALLESGLERVQGR
                     AASHRLVDTDHQGIVRHPQVLQELTALLAT"
     gene            1728..>3085
                     /locus_tag="VLF16_07515"
     CDS             1728..>3085
                     /locus_tag="VLF16_07515"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSX70768.1"
                     /translation="MEQQAKNLARVPFAKARLPLAMACALSAFSFGLHAEEAVQLDAA
                     NISGELDSPVGEDEGYVAKNSRSATKINTPLSETPRSVSVVTDAQMKDRNVQTISEAL
                     RYSAGVQAGFYGEDNKQDWFIIRGFKQANNGLFMDGSRIYSSAFYSWQIDPYMLERIE
                     VLKGASSVLYGQTPPGGLINLQSKRPNAEGRNEIGIQYGSFDRKQINADVGGQLDEEG
                     NLLYRVVALSRDTGTQVDDVDAARILLAPSMTINFNEDTSLTLLASIQKDRSDPQLQF
                     LPSSGTIVNNPNGDIDTDTAVGDPSYETFERDQYTLGYELNHRLSDNWDFQQNLRYGH
                     MDLELRQLFYYGDVTDRLIARGLTYNDGKADNLSVDNRLLGNWSGDRWENTLLIGADY
                     QQLKINDRSPNGYPTFPAIPLLDIYDPEYGLPIGDFALEDKDTRADQMGYYVQEQFKF
                     DN"
BASE COUNT          547 a         1044 c         1000 g          494 t
ORIGIN      
        1 gggctggagc gaggccctgc agaattgggc gagcagcgca gcggcgcagg ccgagttgga
       61 cgcctggtgc agtcgcctga gcggccctgc gctggccttg ccgcgcgaac tcgacggcac
      121 cagcgccagc catggcgaca agcgcgaagt gcgcctggcc ctggacgtcg ccgagaccaa
      181 acgtctgtta caggcgccgg cgcagctggg cgtgcgtatc gatgccttgc tgctcaccgc
      241 gctgacccgc gccctgtgcc gctggagcgg ccagccaggc ctgcgggtca acctcgaagg
      301 ccatggccgc gaggcgctgg ccggcgagct ggatctgtcg cgcacggtcg gctggttcac
      361 cagcctgtat ccgctgcaat tgccgcagct cgatgcggcg gccgagcagc tgcagcaggt
      421 tcagcagcgc ctgcagcagg tcgaacatgg tggccagggc tatggcgtgc tgcgctggct
      481 gggttcggcc gcagcgcagg cggcacttgc cgccgtgccg agcgccgaag tgatcttcaa
      541 ctacctcggc cagtaccagg ctggcgcggc ggcggactgg ttccgtccgg cgtccggcgg
      601 tggtgcggcg gtggcggcga acaacccgct ggccgcgcgc ctggcggtca acggccaggt
      661 gttcgacggc cagttgcagt tgtcctggga atacgcggcc aaccagtacc gcagcgagac
      721 catcgaggcg ctggccgcgg actatcgtcg ggagctgctc ggtctgctgg aacttgcccg
      781 cggccagttg gcgcaaggac catcgccgct gctacggctg actcgccagg aggccggcgc
      841 agccccggtg ttctgcccgc atccggtcac cggccgggtc accggctacc agccgctggc
      901 ggcacgcctg gacggcgtgc gcgaagtctt cggcctgcaa tgtcgcagct tcctcgaccc
      961 gagctggcgc gatgcctcgc tgggcgagat ggccgacgcc tacctggcgg cgctgctcaa
     1021 gcagcagccg caggggccgt accgcctggt cggctggtcg ctaggcggca gtctggccct
     1081 ggagctcgca gcgcgcctgg aagcccgtgg cgaggaggta gccttcctcg gtctgctcga
     1141 ctgctatgta ccaggcaccg agattgccgg cgacgacgcc cgccatccac aggcgcgagc
     1201 caagctggtc gagcatctgc aactgctggc cccggagctg ccggccaagg cctgggacgg
     1261 cctgttcgaa cagctgctgc aactcgaacc gctggactgg ccgcgggcct gtggcagctg
     1321 gttcgccggc cagccgctgg atggcatgac ccgccagagc ctggaggagc tgctgtttgc
     1381 ctgggcgctg gagcagcata tgcgccggct ctgtgccggt tattcgctgc cgaaggtcaa
     1441 ggtgcagccg cactgctggt gggcggcgca gcccgtcggt cgcgctgccc tgctggaaag
     1501 cgggctggag cgggtgcagg ggagggcggc cagtcatcgc ctggtcgaca ccgaccacca
     1561 gggcatcgtc cgtcacccgc aggtattgca ggagctgacg gcgctgttgg cgacctgagc
     1621 cggaagaatt cgctatgact gctaaatttt cccgaccctc gttcgtcttg aacaggcgag
     1681 acatataaat gcgaattctt ctaatttgat ttctttgggg agtgttgatg gaacagcaag
     1741 ctaagaacct ggcccgagtc ccgttcgcca aggcccgtct gccgctggcc atggcctgcg
     1801 cgctgagcgc gttcagcttc ggcctgcacg ccgaggaagc cgttcagctg gatgccgcca
     1861 atatcagcgg cgagctggac agcccggtcg gcgaggacga aggctacgtg gccaagaaca
     1921 gccgcagcgc caccaagatc aacacccccc tgagcgaaac cccgcgctcc gtctcggtcg
     1981 tgaccgatgc ccagatgaag gatcgcaacg tccagaccat cagcgaggcc cttcgttatt
     2041 cggccggcgt acaggccggc ttctacggcg aggacaacaa gcaggattgg ttcatcattc
     2101 gcggcttcaa gcaggccaac aacggcctgt tcatggacgg ctcgcgcatc tactccagcg
     2161 ccttctacag ctggcagatc gacccctaca tgctcgagcg catcgaggtg ctcaagggcg
     2221 cgtcctccgt gctctacggc cagaccccgc cgggcggcct gatcaacctg cagagcaagc
     2281 gcccgaacgc cgaaggccgc aacgagatcg gcattcagta cggcagcttc gaccgcaagc
     2341 agatcaatgc cgacgtcggt ggccagctcg acgaagaggg caacctgctg taccgcgtgg
     2401 tcgcgctgag ccgcgacacc ggcacccagg tggacgacgt ggacgccgcg cgcatcctgc
     2461 tggcgccgtc catgaccatc aacttcaacg aagacacttc gctgaccctg ctggccagca
     2521 tccagaagga tcgttccgat ccccagctgc agttcctgcc gtccagcggc accatcgtga
     2581 acaaccccaa cggcgacatc gataccgaca ccgccgtggg cgaccccagc tacgagacct
     2641 tcgagcgtga ccagtacact ctgggctacg agctgaacca ccgcctcagc gacaactggg
     2701 acttccagca aaacctgcgc tacggccaca tggatctgga actgcgccaa ctgttctact
     2761 acggcgacgt caccgaccgc ctcatcgccc gtggtctgac ctacaacgac ggcaaggccg
     2821 acaacctgtc ggtcgacaac cgcctgctcg gcaactggtc cggcgaccgc tgggagaaca
     2881 ccctgctgat cggtgccgac tatcagcagc tgaaaatcaa cgaccgtagc cccaacggct
     2941 atccgacctt cccggccatt ccgctgctgg atatctacga tcccgaatac ggcctgccga
     3001 tcggcgattt cgccctggaa gacaaggata cccgcgccga ccagatgggc tactacgtcc
     3061 aggagcagtt caagttcgac aactg
//
LOCUS       DATIHC010000460         4243 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10628, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000460 DATIHC010000000
VERSION     DATIHC010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4243
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10628"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..652)
                     /gene="mutM"
                     /locus_tag="VLF16_07520"
     CDS             complement(<1..652)
                     /gene="mutM"
                     /locus_tag="VLF16_07520"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0008534 - oxidized purine nucleobase
                     lesion DNA N-glycosylase activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HSX70769.1"
                     /translation="MPELPEVETTRRGIAPHLEGRRVSRVLVRERRLRWPIPEDLDVR
                     LSGQRIEAVERRAKYLLINAEAGTLIGHLGMSGSLRLVPVGTPAAKHEHVDIELESGM
                     ALRYTDPRRFGALLWSNDPFGHELLVRLGPEPLTEAFDGERLYQLSRGRAMAVKPFIM
                     DNAVVVGVGNIYATEALFAAGIDPRRAAGSISRARYVALALEIKRILAHAIERGGTT"
     gene            complement(719..1534)
                     /locus_tag="VLF16_07525"
     CDS             complement(719..1534)
                     /locus_tag="VLF16_07525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDOD domain-containing protein"
                     /protein_id="HSX70770.1"
                     /translation="MPPQPQIMVDLQMEQFMPNPDLKSIAKLISQDPGLSGALLKIVN
                     SPYFGLANKVSSIQRAVNLLGSRSVINMINALSIKGEMSDETIVTLNRFWDTAQDVAM
                     TCLTLAKRIGCEAPDEAYTLGLFHNCGIPLMLKRFPNYMTVLEEAYYSAGSERRIVDT
                     ENRLLNTNHAVVGYYTAKSWNLPLHLCEAIANHHNALAIFSSDDSSRDVQLKNLLAIL
                     KMAEHICACYRVLGNQEQDHEWDSIRGPVLDYVGLSEYDFDMLKDTIHDLGAG"
     gene            1726..2265
                     /locus_tag="VLF16_07530"
     CDS             1726..2265
                     /locus_tag="VLF16_07530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016980687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase
                     domain-containing protein"
                     /protein_id="HSX70771.1"
                     /translation="MSLSLKGKRVALLVTDGFEQVEMTEPKKALEAAGARADVLSTKE
                     GQVQGWHHDKPGDSFPVDGTIDKAQVEEYDAIVLPGGVMNSDTIRTDTAALTLVQAAE
                     KSGKPIAVICHGAWLLVSAGLVEGKTMTSWPSLKDDIRNAGGDWQDKEVIRDGNLISS
                     RKPDDLPAFNQALLELLAA"
     gene            2447..3643
                     /locus_tag="VLF16_07535"
     CDS             2447..3643
                     /locus_tag="VLF16_07535"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019097921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent rRNA methyltransferase"
                     /protein_id="HSX70772.1"
                     /translation="MTLPALRLKANADRRLRAGHLWVYSNEIDVAATPLHGFQAGDQA
                     ILEAAGGKPLGVVAMSPNNLICARLLSRDVKHLLDKSLLVHRLNVALSLRERLFDTPH
                     YRLVYGDSDLLPGLVVDRFGDHLVVQLASATMEQQKEAVIEALVQVLKPRGILFKNDS
                     AARDAEGLQRYVDTAFGVVPEWVALEENGVKFEAPVLGGQKTGWFYDHRMNRARLAPY
                     VQGKRVLDLFSYVGGWGVQAAAFGASEVFCVDGSSLALDGVERNATLNGVAEKVTCVE
                     GDVFEALKELKAAEERFDVVVADPPAFIKRKKDLKNGEAAYRRLNEQAMRLLNKDGIL
                     VSASCSMHLPEDDLQNILLSSARHLDRNLQLLERGGQGPDHPVHPAIPETRYIKSLTV
                     RLLPNS"
     gene            complement(3678..>4243)
                     /locus_tag="VLF16_07540"
     CDS             complement(3678..>4243)
                     /locus_tag="VLF16_07540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013984362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSX70773.1"
                     /translation="ASHGFVVAAAETSNAGTGQEMLACLDYLVQENAATYGTYAGKLN
                     AGRVGTSGHSQGGGGSIMAGQDDRVRVTAPIQPYTIGLGHDSASQRNQKGPMFLMTGG
                     GDTIAFPYLNAQPVYTRANVPVFWGERRTVSHFEPVGNGGAYRGPSTAWFRYHLMNDQ
                     NASSTFYGTFCGLCTSLLWTEQRKGIN"
BASE COUNT          701 a         1399 c         1444 g          699 t
ORIGIN      
        1 gggtggtgcc gccacgctcg atggcatggg cgaggatgcg cttgatctcc agcgccagcg
       61 ccacgtagcg ggcgcgggaa atcgacccgg cggcgcgacg tgggtcgatg ccggcggcga
      121 acagcgcctc cgtcgcatag atgttgccca cgcccaccac cacggcgttg tccatgatga
      181 acggcttgac cgccatggcc cggccgcgcg agagctggta cagacgctcg ccatcgaagg
      241 cctcggtcag cggctccggg cccaggcgca cgagcagctc gtggccgaac gggtcgttgc
      301 tccagagcag cgcaccgaag cgccgtggat cggtgtagcg cagagccatg ccggactcca
      361 gctcgatgtc cacatgctcg tgcttggccg ccggggtacc caccggcacc aggcgcaggc
      421 tgccggacat gcccaggtga ccgatcagcg tgccggcctc ggcattgatc agcaggtact
      481 tggcgcgccg ctccaccgcc tcgatgcgct ggcccgacag gcgcacgtcg aggtcttcgg
      541 gaatcggcca gcgcaggcgg cgctcgcgca ccagcacgcg gctgactcgg cgcccctcga
      601 gatgaggcgc gatgccgcgg cgggtggttt cgacttcggg gagttcgggc atggacgtca
      661 gactgcgacg gaaggggcgg ccaccttagc aggcgccggc aggccggtta agtgccgctc
      721 agccggcgcc caggtcgtgg atggtgtcct tgagcatgtc gaagtcgtac tccgacagcc
      781 cgacgtagtc cagcaccggg ccgcggatgc tgtcccactc gtggtcctgc tcctggttgc
      841 cgagcacgcg gtagcacgcg cagatgtgct cagccatctt caggatggcc agcaggttct
      901 tcagctgcac gtcgcggctg gagtcgtcgc tgctgaagat ggccagggcg ttgtggtggt
      961 tggcgatggc ctcgcacagg tgcagcggca ggttccacga cttggcggtg tagtagccga
     1021 ccactgcgtg gttggtgttg agcaggcggt tctcggtatc gacgatgcgg cgctcgctgc
     1081 cggcgctgta gtaggcctcc tccagcaccg tcatgtagtt ggggaagcgc ttgagcatca
     1141 gcgggatgcc gcagttgtgg aacaggccca gggtataggc ctcgtccggc gcctcgcagc
     1201 cgatccgctt ggccagggtc aggcaggtca tggccacgtc ctgggcggtg tcccagaagc
     1261 ggttgagggt gacgatggtc tcgtcgctca tctcgccctt gatcgacagg gcattgatca
     1321 tgttgatcac cgagcggctg ccgagcaggt tcaccgcgcg ctggatcgag ctgaccttgt
     1381 tggccaggcc gaaatacggc gagttgacga tcttcaacag cgcgccggac agccccgggt
     1441 cctggctgat gagcttggcg atgctcttca ggtccgggtt gggcatgaac tgctccatct
     1501 gcagatcgac catgatctgc ggctgcgggg gcacgctgat gccctgcagc acctgctgaa
     1561 tctgttcggg ggagagttcc tggaccatgg cacgacagct ggaagtgtga acgagcctac
     1621 agtctaaccg agcgcgtgcg acaaggcggc taaacctttt ggctgatctt ttccggccgg
     1681 gcccggtcgg aacaggaaca cccccgacac agaggagatt ccgccatgtc gctatccctg
     1741 aaaggcaaac gcgtcgccct gctggtcacc gatggcttcg agcaggtcga gatgaccgag
     1801 ccgaagaagg ccctggaagc cgccggcgcc cgcgccgatg tgctctccac caaggaaggc
     1861 caggtgcagg gctggcacca cgacaagccc ggcgacagct tcccggtcga cggcaccatc
     1921 gacaaggccc aggtcgagga atacgacgcc atcgtcctgc ccggcggcgt gatgaattcc
     1981 gacaccatcc gcaccgacac cgccgcgctg accctggtgc aggccgccga gaagtccggc
     2041 aagccgatcg cggtgatctg ccatggcgcc tggctgctgg tctcggccgg cctggtcgag
     2101 ggcaagacaa tgaccagttg gccgtcgctc aaggacgaca tccgcaacgc cggcggcgat
     2161 tggcaggaca aggaagtgat ccgcgacggc aacctgatca gcagccgcaa gccggacgac
     2221 ctgccggcgt tcaatcaggc cctgctggag ctgctggcgg cctgagaacc tgtctacgac
     2281 ttgatcatcg gccatgcttc gtcgagcgcg gtctcgggct gctcatttac gaccggtaaa
     2341 ctccgcgccc ccgctcgcct ggcctggccc tagctcaaca gcgcgtaaac aggctccggt
     2401 cagagtgggc agggtataat cgcgctcttt tttccggagc gcccccatga ccctgcccgc
     2461 cctgcgcctc aaagccaatg ccgatcgccg cctgcgcgcc ggtcacctgt gggtctacag
     2521 caacgagatc gacgtggcgg ccaccccgct gcacggtttc caggccggcg accaggcaat
     2581 cctcgaggcg gccggcggca agccgctggg cgtcgtggcg atgagcccga acaacctgat
     2641 ctgcgcccgc ctgctgtcgc gcgacgtcaa gcacctgctg gacaagtcac tgctggtgca
     2701 ccgcctgaat gtcgccctga gcctgcgcga gcgcctgttc gataccccgc actaccgcct
     2761 ggtgtacggc gattccgacc tgctgccggg cctggtggtc gaccgcttcg gcgaccatct
     2821 ggtggtgcag ttggcctccg ccaccatgga gcagcagaaa gaggcggtga tcgaggcgct
     2881 ggtgcaggtg ctcaagccgc gcggcatcct gttcaagaac gactccgccg cccgcgacgc
     2941 cgagggcctg cagcgctacg tcgacaccgc cttcggcgtg gttcccgaat gggtcgcgct
     3001 ggaggagaac ggcgtgaagt tcgaggcccc cgtgctcggc ggccagaaga ccggctggtt
     3061 ctatgaccat cgcatgaacc gcgcgcgcct ggcgccctat gtgcagggca agcgcgtact
     3121 cgacctgttc agctacgtcg gcggctgggg cgtgcaggcc gccgctttcg gcgccagcga
     3181 ggtgttctgc gtggacggct cgagcctggc gctggacggt gtggagcgca acgccacgct
     3241 caacggcgtg gccgagaagg tcacctgcgt ggaaggcgat gtgttcgagg cgttgaagga
     3301 actgaaggcc gccgaagagc gcttcgacgt ggtggtcgcc gacccgcccg ccttcatcaa
     3361 gcgcaagaag gacctgaaga acggcgaggc cgcctaccgc cgtctcaacg aacaggccat
     3421 gcgcctgctg aacaaggacg gcatcctggt cagcgccagt tgctccatgc acctgccgga
     3481 agacgacctg cagaacatcc tgctctccag cgcccgccac ctggatcgca acctgcagct
     3541 gctcgagcgc ggcggccagg gcccggacca tccggtgcac ccggccattc ccgagacccg
     3601 ctacatcaag agcctgacgg tacgcctgtt gcccaacagc tgacggaggc cccgcccttt
     3661 cgggcggggc gggggcatta gttgatgccc ttgcgctgct cggtccacag caggctggtg
     3721 cacaggccgc agaaggtgcc gtagaaggtg ctactggcgt tctggtcgtt catcaggtga
     3781 tagcggaacc acgcggtgga cggcccgcgg taggcgccgc cattgccgac cggttcgaag
     3841 tggctgaccg tgcgccgttc gccccagaac accggcacgt tggcgcgggt gtagaccggc
     3901 tgggcgttca ggtaggggaa ggcgatggtg tcgccgccgc cggtcatcag gaacatcggc
     3961 cccttctggt tgcgctgcga cgcgctgtcg tggcccaggc cgatggtgta cggctggatg
     4021 ggcgccgtca cccgcacccg gtcgtcctgc ccggccatga tcgaaccgcc gccgccctgg
     4081 gaatgcccgg acgtgccgac acgcccggca ttgagcttgc cggcataggt gccgtaggtg
     4141 gcggcgtttt cctgcaccag gtaatccagg caggcgagca tctcctggcc ggtgccggcg
     4201 ttggacgtct ccgccgcggc caccacgaag ccatggctgg ccc
//
LOCUS       DATIHC010000461         1512 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_3642, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000461 DATIHC010000000
VERSION     DATIHC010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3642"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            129..1193
                     /gene="fba"
                     /locus_tag="VLF16_07545"
     CDS             129..1193
                     /gene="fba"
                     /locus_tag="VLF16_07545"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249246.1"
                     /note="catalyzes the reversible aldol condensation of
                     dihydroxyacetonephosphate and glyceraldehyde 3-phosphate
                     in the Calvin cycle, glycolysis, and/or gluconeogenesis;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HSX70774.1"
                     /translation="MALISMRQMLDHAAEFGYGVPAFNVNNLEQMRAIMEAADKTDSP
                     VIVQASAGARKYAGAPFLRHLILAAIEEFPHIPVCMHQDHGTSPDVCQRSIQLGFSSV
                     MMDGSLKEDGKTPADYDYNVRVTQQTVAFAHACGVSVEGELGCLGSLETGMAGEEDGV
                     GAEGVLDHSQLLTDPEEAADFVKRTQVDALAIAIGTSHGAYKFTKPPTGDVLSIERIK
                     EIHKRIPNTHLVMHGSSSVPQEWLKVINEFGGDIKKTYGVPVEEIVEGIKHGVRKVNI
                     DTDLRLASTGAIRRMMAEQPSEFDPRKFFAKTIVAMRDICIARYEAFGTAGNASKIKP
                     ISLEGMYQRYASGELTAKVN"
     gene            1306..>1512
                     /locus_tag="VLF16_07550"
     CDS             1306..>1512
                     /locus_tag="VLF16_07550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70775.1"
                     /translation="MRLFIIALACTVLLGCAQRPATDSPGPAPAPPVPDPQRCVARAE
                     CTTKVSRTLLFVFDYAAAGGHLVQR"
BASE COUNT          283 a          540 c          462 g          227 t
ORIGIN      
        1 ttcgaatccc gcgtggcgaa cggcgcgcgg ggcagggagg gcggacgccc gattcccgaa
       61 aacttgaaca aggcccgccc ctgcggcagg cttgcacacc taacgaccct gatttgggag
      121 cttcacagat ggcacttatc agcatgcgcc agatgctcga ccacgccgcc gaattcggct
      181 acggcgtgcc ggccttcaac gtcaacaacc tcgagcagat gcgcgcgatc atggaagcgg
      241 ccgacaagac cgactccccg gtgatcgttc aggcctccgc cggtgcccgc aaatatgccg
      301 gcgcgccctt cctgcgccac ctgatcctgg ccgccatcga agaattcccg cacattccgg
      361 tgtgcatgca ccaggaccac ggcactagtc cggacgtgtg ccagcgttcg atccagctgg
      421 gtttttcctc ggtgatgatg gacggctcgc tgaaggaaga cggcaagacc ccggccgact
      481 acgactacaa cgtccgcgtc acccagcaga ccgtcgcctt cgcccacgcc tgcggcgtgt
      541 ccgtagaggg cgagctgggc tgcctgggca gcctggaaac cggcatggcc ggtgaagaag
      601 acggcgtcgg cgccgaaggc gtgctggacc acagccaact gctgaccgac ccggaagagg
      661 ctgccgactt cgtcaagcgc acccaggtcg acgccctggc catcgccatc ggcaccagcc
      721 acggcgccta caagttcacc aagccgccaa ccggcgacgt gctctccatc gagcgcatca
      781 aggaaatcca caagcgcatc cccaacaccc acctggtgat gcacggctcc tcctcggtgc
      841 cgcaggagtg gctgaaggtg atcaacgaat tcggcggcga catcaagaaa acctacggcg
      901 tgccggtcga agagatcgtc gaaggcatca agcacggcgt gcgcaaggtc aacatcgaca
      961 ccgacctgcg tctggcctcc accggcgcca tccgccgcat gatggccgag cagccgagcg
     1021 agttcgaccc gcgcaagttc ttcgccaaga ccatcgtcgc catgcgtgac atctgcatcg
     1081 cccgctacga ggccttcggc accgccggca acgcctccaa gatcaagccg atctccctgg
     1141 aaggcatgta ccagcgctac gccagcggcg agctgaccgc caaggtcaac taagcggccc
     1201 gttgtaccga aagccccgct ctgcggggct ttctcgttta ggggggcgcc tcacaccgcg
     1261 gaggcgccag acggcgcgcg cggcgcgccc tacggagagc tgcgtatgag actgttcatc
     1321 atagccttgg cctgcacggt gctgctcggc tgcgcgcagc ggccggcgac ggactcgccc
     1381 ggtcccgcgc cggcgccgcc cgttcccgat ccgcagcgct gcgtggcgcg tgccgagtgc
     1441 accaccaagg tctcgcgcac cctgctgttc gtcttcgact acgccgcggc cggcggccat
     1501 ctggtgcagc gt
//
LOCUS       DATIHC010000462         2290 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17031, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000462 DATIHC010000000
VERSION     DATIHC010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2290
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17031"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..153
                     /locus_tag="VLF16_07555"
     CDS             <1..153
                     /locus_tag="VLF16_07555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020292988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HSX70776.1"
                     /translation="VLDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMGEHEI
                     LAVIEA"
     gene            200..1840
                     /gene="groL"
                     /locus_tag="VLF16_07560"
     CDS             200..1840
                     /gene="groL"
                     /locus_tag="VLF16_07560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253075.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HSX70777.1"
                     /translation="MAAKEVKFGDSARKKMLVGVNVLADAVKATLGPKGRNVVLDRSF
                     GAPLITKDGVSVAKEIELKCKFENMGAQLVKDVASKANDAAGDGTTTATVLAQAIVNE
                     GLKSVAAGMNPMDLKRGIDKATAAIVAQLKELSKPCADTKAIAQVGTISANSDNSIGD
                     IIAEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFINKPDTMVAELEGP
                     LLLLVDKKISNIRELLPVLESVAKAGRPLLIVAEDIEGEALATLVVNRLRAGLKVAAV
                     KAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEGATLEHLGNAKRVVLNKENTTIID
                     GAGAQADIEARVAQIRKQVEETSSDYDKEKLQERLAKLAGGVAVIKVGAATEVEMKEK
                     KARVEDALHATRAAVEEGVVPGGGVALVRALQAIEGLKGDNEDQNVGIALLRRAVEAP
                     LRQIVANAGGEPSVVVDKVKNGTGNFGFNAATDVYGDMIEMGILDPAKVTRSALQAAA
                     SIGGLMITTEAMVADIVEDKPAPAMPDMGGMGGMGGMM"
     gene            1980..>2290
                     /locus_tag="VLF16_07565"
     CDS             1980..>2290
                     /locus_tag="VLF16_07565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX70778.1"
                     /translation="MRILLVEDNRDILANMADYLQIKGYTVDCAQDGLSGLRLASSEH
                     YDLLVLDIMLPGIDGYTLCKRLREEARRDTPVIMLTARDQLDDRLQGFQAGADDYLVK
                     P"
BASE COUNT          469 a          742 c          724 g          355 t
ORIGIN      
        1 gttctggaca acggcgaagt ccgcgcgctg gccgtgaagg tcggtgacaa ggtggtgttc
       61 ggcccgtaca gcggcagcaa caccgtcaag gtcgacggcg aagacctgct ggtgatgggc
      121 gagcacgaaa tcctcgccgt catcgaagcc tgatccgacg catctccgtc caaacgtaca
      181 gaattgagga acaagcaaaa tggctgctaa agaagtcaaa ttcggcgatt ccgctcgcaa
      241 gaagatgctg gttggcgtca acgtcctggc cgacgccgtc aaggcaaccc tcggcccgaa
      301 aggccgcaac gtggtcctgg accgcagctt cggcgctccg ctgatcacca aggacggcgt
      361 gtccgttgcc aaggaaatcg agctgaagtg caagttcgag aacatgggcg cccagctggt
      421 gaaagacgtt gcctccaagg ccaacgacgc tgccggtgac ggcaccacca ccgccaccgt
      481 tctggcccag gccatcgtca acgaaggcct gaagtcggtc gctgccggca tgaacccgat
      541 ggacctcaag cgcggcatcg acaaggccac cgcggccatc gtcgcccaac tgaaggaact
      601 gtccaagccg tgcgccgaca ccaaggccat cgcccaggtc ggcaccatct ccgccaactc
      661 cgacaactcc atcggcgaca tcattgccga agccatggag aaggtcggta aagaaggcgt
      721 gatcaccgtc gaggaaggtt cgggcctgga gaacgagctg tccgtcgtgg aaggcatgca
      781 gttcgaccgc ggctacctgt ccccgtactt catcaacaag ccggacacca tggtcgccga
      841 gctggaaggc ccgctgctgc tgctggtgga caagaagatc tccaacatcc gcgaactgct
      901 gccggtgctg gaatccgtcg ccaaggccgg tcgcccgctg ctgatcgttg ccgaagacat
      961 cgaaggcgaa gcgctcgcga ccctcgtcgt caaccgcctg cgcgccggcc tcaaggtcgc
     1021 tgccgtcaag gctccgggct tcggcgaccg ccgcaaggcc atgctgcagg acatcgctat
     1081 cctcaccggc ggtaccgtga tttccgagga agtcggcctg tcgctggagg gcgccaccct
     1141 ggagcacctg ggtaacgcca agcgcgtcgt gctgaacaag gaaaacacca ccatcatcga
     1201 cggtgccggc gctcaggccg acatcgaagc ccgcgtggcg cagatccgca agcaggtcga
     1261 agagacctct tccgactacg acaaagagaa gctgcaagag cgtctggcca agctggccgg
     1321 cggtgttgcc gtgatcaagg tcggcgctgc caccgaagtc gagatgaaag agaagaaggc
     1381 ccgtgtcgaa gacgccctgc acgccacccg cgcagccgtc gaagaaggcg tggtgcctgg
     1441 cggcggcgta gccctggtgc gcgcgctgca ggccatcgaa ggcctgaagg gcgacaacga
     1501 agaccagaac gtcggtatcg ccctgctgcg tcgcgccgtc gaggctccgc tgcgccagat
     1561 cgtcgccaac gccggcggcg agccgagcgt ggtggtcgac aaggtgaaga acggtaccgg
     1621 caacttcggt ttcaacgccg ctaccgacgt ctacggcgac atgatcgaaa tgggcatcct
     1681 ggacccggcc aaggtcaccc gttccgccct gcaggctgcg gcctccatcg gcggtctgat
     1741 gatcaccacc gaagccatgg tcgccgacat cgtcgaagac aagccggctc cggccatgcc
     1801 ggacatgggc ggcatgggtg gcatgggcgg catgatgtaa gccgaccggc tccccgagct
     1861 gtacagaaag ccccgcctcg gcggggcttt ttcttgcgca tgaaaaatcc gtcaaagccg
     1921 gcggccgcgg gcctgttccg cggtatcttt gccggcagtg cggaacgagg tgattttcca
     1981 tgcgcatcct cctggtcgag gacaatcgcg acatcctggc caacatggcc gactatctgc
     2041 agatcaaggg ctacacggtc gactgcgccc aggacgggct ctccggcctg cgcctggcca
     2101 gcagcgagca ttacgacctg ctggtgctgg acatcatgct gccgggcatc gacggctata
     2161 ccctgtgcaa gcgcctgcgc gaagaggcgc ggcgcgacac cccggtgatc atgctcaccg
     2221 cgcgcgacca gctggacgat cgtctgcagg gctttcaggc cggcgccgac gattatctgg
     2281 tcaagccgtt
//
LOCUS       DATIHC010000463         3269 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19954, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000463 DATIHC010000000
VERSION     DATIHC010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3269)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3269
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19954"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1255
                     /gene="aceK"
                     /locus_tag="VLF16_07570"
     CDS             <1..1255
                     /gene="aceK"
                     /locus_tag="VLF16_07570"
                     /EC_number="2.7.11.5"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017938860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008772 - [isocitrate dehydrogenase
                     (NADP+)] kinase activity [Evidence IEA];
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional isocitrate dehydrogenase
                     kinase/phosphatase"
                     /protein_id="HSX70779.1"
                     /translation="TDYSYNAPFEDLERDLAKLEQQLRTNLPDWVCKDQQLTIELFSS
                     TLYRNKGAYLVGRIFTPDEQWPLVFPLLHREGQGVQIDTLITDEAEVSIIFSFTRSYF
                     MVRVEIPAEFIGFLKRILPGKHIAELYTSIGFYKHGKSEFYRSLINHLANTDDKFVMA
                     PGVRGMVMSVFTLPGFNTVFKIIKDRFSPSKNVDHNTVIEKYRLVKSVDRVGRMADTQ
                     EFSDFRFPLAKFDPECLAELLEVAPSTVEIENGDTVLIRHCWTERRMTPLNIYLEHAN
                     EAQVREALEDYGLAIKQLAAANIFPGDMLLKNFGVTRHGRVVFYDYDEISYLTEVNFR
                     RIPPPRYEEDEMSSEPWYSVGPNDVFPEEFPRFLFVDIGQRRLFSQLHGDLYEADYWK
                     SLQDAIRAGKVIDVFPYRRKADLIA"
     gene            1375..2940
                     /locus_tag="VLF16_07575"
     CDS             1375..2940
                     /locus_tag="VLF16_07575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016498454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing methyl-accepting
                     chemotaxis protein"
                     /protein_id="HSX70780.1"
                     /translation="MRQNLPVTQRERTFAADERLISTTDLNSKITYCNDAFVEISGFT
                     REELIGQPHNLVRHPDMPPMVFGHMWDTIKQGKPWMGVVKNRSKNGDYYWVSAYVTPI
                     YENGKMAGYESVRSLPTEAQKRRAEALYARLRAGKPPVPRMQYWTYDIIRSWPLILAG
                     LVIVAGHWVFSGVWLLAFIVAVMFALGSYQLYSKRQMIRRTLAEHPRAFTSALVALTY
                     SDNRGAQALLDMAMISEEARLQTALTRLEDAGENVRQRASQSADLSRSSAELLEQQRS
                     ETDQSATAINQMAATIQEVAHNVQNTSHAAEEADRLALQGRDLAGGSLQAMQQMAGAV
                     QEIGQAVNELAESTQSIGSVADVITSIAEQTNLLALNAAIEAARAGEQGRGFAVVADE
                     VRALAGRTRESTEQIHQIISSLRSGADKAVNTASRGEEISRDSVRSVEAVREALDGIS
                     QAVTRITSMSQQMAAASEQQAHVAEDISRQITRIAQLSDNSAGQAQQGVGISQELESM
                     AAYLHSLAERFNR"
     gene            3020..>3269
                     /locus_tag="VLF16_07580"
     CDS             3020..>3269
                     /locus_tag="VLF16_07580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003404257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DTW domain-containing protein"
                     /protein_id="HSX70781.1"
                     /translation="MSRARCERCARPQTHCLCHLIPNLPSRTRVLILQHPDEVGHALN
                     TARLAALGLANAELRVGEYFADLALDPAYRACLLFPGET"
BASE COUNT          599 a         1108 c         1060 g          502 t
ORIGIN      
        1 caccgactac agctacaacg cgcctttcga ggacctggag cgcgacctgg ccaagctcga
       61 gcagcagctg cgcaccaacc tgccggactg ggtgtgcaag gaccagcagc tgaccatcga
      121 gctgttctcg tccacgctgt accgcaacaa gggcgcctac ctggtcggcc gcatcttcac
      181 cccggacgag cagtggccgc tggtgttccc gctgctgcac cgcgaggggc agggcgtgca
      241 gatcgacacg ctgatcaccg atgaggcgga ggtgtcgatc atcttctcct tcacccgttc
      301 ctatttcatg gtgcgggtgg agattccggc ggagttcatc ggcttcctca agcgcatcct
      361 gccgggcaag cacatcgccg aactgtatac ctccatcggt ttctacaagc acggcaagtc
      421 ggagttctac cggtcgctga tcaaccacct ggccaacacc gacgacaagt tcgtcatggc
      481 ccccggcgtg cgcggcatgg tgatgagcgt gttcaccctg ccgggcttca ataccgtatt
      541 caagatcatc aaggaccgct tctcgccgtc gaagaacgtc gaccacaaca cggtgatcga
      601 gaagtatcgt ctggtgaaga gcgtcgaccg ggtaggacgc atggccgaca cccaggagtt
      661 ctccgacttc cgcttcccgc tggccaagtt cgaccccgaa tgcctggcgg agctgctgga
      721 ggtggcgccg tccaccgtgg agatcgagaa cggcgacacc gtgctgatcc gccactgctg
      781 gaccgagcgc cgcatgacac cgctgaacat ctacctggag cacgccaacg aggcccaggt
      841 gcgcgaggcg ctggaggact acggcctggc catcaagcag ctggccgcgg cgaacatctt
      901 ccccggcgac atgctgctga agaacttcgg cgtcacccgt cacggccgcg tggtgttcta
      961 cgactacgac gagatcagct acctcaccga ggtgaacttt cgtcgcatcc cgccgccacg
     1021 ctacgaggaa gacgagatgt ccagcgagcc gtggtactcg gtggggccga acgacgtgtt
     1081 ccccgaggag tttccgcgct tcctgttcgt cgatatcggc cagcgccggc tgttcagcca
     1141 gttgcacggc gacctgtacg aggccgacta ctggaagagc ctgcaggacg cgattcgcgc
     1201 gggcaaggtg atcgacgtgt tcccctaccg gcgcaaggcc gatctgatcg cctgaggcct
     1261 ccgtcaggca aggaaaggtg gctgccggtt tgtgcggatc tggcacgtat gtgctagacc
     1321 caatagggca aggccaggaa gtcacctatc ccattgtcca aggacggtat gcctatgcgt
     1381 caaaatctgc ccgtgactca gcgcgaacgt acctttgccg ccgacgagcg cctgatctcc
     1441 acgaccgacc tgaacagcaa gatcacctac tgcaacgacg ccttcgtcga gatcagcggc
     1501 ttcacccgtg aagagctgat cggccagcca cataacctcg tccgccaccc ggacatgccg
     1561 ccgatggtgt tcggccacat gtgggacacc atcaagcagg gcaagccgtg gatgggggtg
     1621 gtcaagaacc gctcgaagaa cggcgactac tactgggtca gcgcctacgt cacgccgatc
     1681 tacgagaacg gcaagatggc cggctacgag tccgtgcgct cgctgcccac cgaggcgcag
     1741 aagcgccggg ccgaggccct gtacgcccgc ctgcgcgccg gcaagccgcc ggtgccgcgc
     1801 atgcagtact ggacctacga catcatccgc tcctggccgc tgatcctcgc cgggctggtg
     1861 atcgtggcgg gccactgggt gttcagcggc gtctggctgc tggcgttcat cgtcgcggtg
     1921 atgttcgccc tcggctccta ccagctctac agcaagcggc agatgatccg ccgcaccctg
     1981 gccgagcatc cccgggcctt caccagcgcg ctggtggccc tgacctacag cgacaaccgc
     2041 ggcgctcagg cgctgctgga catggccatg atcagcgagg aagcgcgcct gcagaccgcg
     2101 ctgacgcgcc tggaggacgc cggcgagaac gtgcgccagc gcgcctcgca atccgccgat
     2161 ctgtcgcgct ccagcgccga actgctggag cagcagcgca gcgagacgga ccagtcagcc
     2221 acggccatca accagatggc ggcgaccatt caggaggtcg cgcacaacgt gcagaacacc
     2281 tcgcacgccg ccgaggaggc cgatcgcctc gccctgcagg gtcgcgatct ggccggcggc
     2341 agcctgcagg ccatgcagca gatggccggt gcggtgcagg agatcggcca ggcggtgaac
     2401 gagctggccg agtccaccca gtccatcggc agcgtggccg acgtgatcac ctccatcgcc
     2461 gagcagacca acctgctggc gctcaacgcg gccatcgagg cggcgcgggc gggcgagcag
     2521 ggccgtggct tcgccgtggt ggccgacgag gtgcgcgcgt tggccgggcg gacccgcgaa
     2581 tccaccgagc agattcacca gatcatctcg tcgctgcgca gcggtgccga caaggcggtg
     2641 aacaccgcca gccgtggcga ggagatctcc cgcgacagcg tgcgcagcgt cgaggcggtg
     2701 cgtgaggcgc tggacggcat cagccaggcg gtgacccgca tcaccagcat gagccagcag
     2761 atggccgcag cgtccgagca gcaggcgcat gtggccgagg acatcagccg gcagatcacc
     2821 cgcatcgccc agctgtccga caacagcgcc gggcaggcgc agcagggcgt gggcatcagc
     2881 caggagctgg agagcatggc ggcctacctg cacagcctgg cggagcgctt caaccgctga
     2941 ccgatcggcc gggcttcggc ccggccggcg gcggatgccg caggcctgtg gcacactgcg
     3001 cggcccggag gaaaccgcca tgtcccgagc gcgctgcgag cgttgcgcca gaccgcagac
     3061 ccactgtctc tgccacctga ttccgaacct gccgagccgc acccgggtgt tgatcctgca
     3121 gcacccggac gaggtcgggc atgcgctgaa caccgcgcgc ctggccgcgc tgggattggc
     3181 caacgccgag ctgcgggtgg gcgaatattt cgccgatctg gcgttggacc cggcgtaccg
     3241 cgcctgcctg ctgttccccg gcgagacgg
//
LOCUS       DATIHC010000464         2004 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31608, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000464 DATIHC010000000
VERSION     DATIHC010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31608"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(98..1849)
                     /locus_tag="VLF16_07585"
     CDS             complement(98..1849)
                     /locus_tag="VLF16_07585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009684081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSX70782.1"
                     /translation="MNYDVIIKNGLVFDGVSESGISADVGIKDGRVAAIARNLADDTA
                     CQNILDAQGCWVMPGFLEMHSHYDAEVLTAAGLKESIRHGVTTVATGLCSLSMVAASA
                     EDCADLFSRVESIPHEHVLSLLSAKKTWSTPGEYRRYLESLPLGPNISCFIGHSDIRA
                     AAMGLVNATTERTPSAAEMAQMERLLDDALDNGFLGLSVMKTRIDRVAGERAWSRPLP
                     STFATWKEMRRLFARLRKRGAILQGAPDVAEQSSAVKLMFASSGWFRPRLKTTLLTAL
                     DLKVSPYLHLLARISGWVSSNLLRGNLKWQFLPAPLRVYSAGLNFNNFDEFAGGLVLR
                     NLKNEEDQYAEAAKPEFRQMFKEGIASVLKVGLWQRDFSDARVIACPDASVVGKNFAE
                     IGAARRQDPVDCFLDLAVEHKSELVWTTLMGNNREPVMQRLIRSPNVHVGFADSGAHI
                     RGLAFYNFPLRLLKYVRDAQQAGQPFIGTGAAVARLTSELANWYGLEAGHLYVGARAD
                     VAVVDPSGLDESLDAVAEARIENTELMRLVNRNDRAVLATLVNGRVAYTRDKGYAADL
                     GTAPGYGRFLPAHHGRS"
BASE COUNT          330 a          647 c          686 g          341 t
ORIGIN      
        1 gattggtggt ggtgaagagc tggccgccgt ccaccaggcg atgttccgcg ccgatgaact
       61 ggccgatcat tttcgtctgc atgaaatcct ccgcagttca ggagcgcccg tggtgggcgg
      121 gcaggaagcg gccgtaaccc ggagccgtgc caaggtcggc ggcgtagccc ttgtcacgcg
      181 tgtaggccac gcggccgttg accagggtcg ccagcacggc gcggtcgttg cggttcacca
      241 ggcgcatcag ctcggtgttc tcgatgcgcg cctcggcgac cgcatccagg ctctcgtcca
      301 ggccgctggg gtcgaccacg gcgacgtcgg cacgcgcgcc gacgtacagg tgcccggcct
      361 cgagcccgta ccagttggca agttccgagg tcaggcgcgc cacggcggcg ccggtgccga
      421 tgaacggctg gccggcctgc tgggcgtcac gcacgtactt gagcaggcgc agcgggaagt
      481 tgtagaaggc cagcccgcgg atgtgggcac cggagtcggc gaagccgacg tgcacgttcg
      541 ggctcctgat cagcctctgc atcaccggct cgcggttgtt gcccatcagc gtggtccaca
      601 ccagctcgga cttgtgctcg accgccaggt cgaggaagca gtcgaccggg tcctgacgac
      661 gggccgcgcc gatctcggcg aagttcttgc cgaccaccga ggcgtccggg caggcgatca
      721 cccgggcgtc cgagaagtcg cgctgccaca gcccgacctt gagcacgctg gcgatgcctt
      781 ccttgaacat ctgccggaac tccggcttgg cggcctcggc gtactggtcc tcttcgttct
      841 tcaggttgcg cagcaccagt ccgccggcga actcgtcgaa gttgttgaag ttcaggccgg
      901 cgctgtagac ccgcagcggc gccggcagga actgccactt gaggttgccg cgcagcaggt
      961 tgctcgacac ccagccactg atgcgggcga gcaggtgcag gtacggcgag accttgaggt
     1021 cgagggcggt cagcagggtg gtcttcaggc gcggacggaa ccagccggag ctggcgaaca
     1081 tcagcttcac cgcgctcgac tgctcggcca cgtccggcgc gccctgaagg atggcgccgc
     1141 gcttgcgcag acgcgcgaac aggcgacgca tctccttcca ggtggcgaag gtggatggca
     1201 acggccgcga ccaggcgcgc tcgccggcca cgcggtcgat gcgcgtcttc atcaccgaca
     1261 ggccgaggaa accgttgtcc agggcgtcgt ccagcaggcg ctccatctgt gccatctcgg
     1321 cggcactggg tgtgcgctcg gtggtcgcgt tcaccagccc catcgccgcc gcgcggatgt
     1381 cggaatggcc gatgaagcag gagatgttcg ggcccagcgg cagggactcg aggtagcggc
     1441 ggtactcgcc gggcgtgctc caggtcttct tcgcgctgag cagcgagagc acatgctcat
     1501 gggggatgga ttccacgcgg ctgaacaggt cggcgcagtc ttcggcgctg gcggccacca
     1561 tgctcagcga gcagaggccg gtggccacgg tggtcacgcc atggcggatc gactccttga
     1621 gcccggcggc ggtgagcacc tcggcatcgt agtgcgagtg catctcgagg aagccgggca
     1681 tcacccagca gccctgggca tccagaatat tctggcatgc agtgtcgtca gcaaggttcc
     1741 tggcgatggc cgcaacacgc ccatccttga tgcctacgtc cgcagagata ccgctttcgc
     1801 tgacaccatc gaacaccagg ccgttcttga tgatcacatc gtaattcatt gttcttgtct
     1861 cgtatttgac gacgcatatc atcagaatac gaacgatcga cagctgtcaa gacggattcc
     1921 gcctagcgga aggcctgcat ctggctggtc aggacctgca gcatgcgggt cgcggccatg
     1981 gacaggcgtc gccccgcgcg ggtc
//
LOCUS       DATIHC010000465         2263 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8333, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000465 DATIHC010000000
VERSION     DATIHC010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8333"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..478
                     /locus_tag="VLF16_07590"
     CDS             <1..478
                     /locus_tag="VLF16_07590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="metal ABC transporter ATPase"
                     /protein_id="HSX70783.1"
                     /translation="PYPLRYREGSHFRLSPLSGSARPVQCGNLMLMERPRAYVHLPTA
                     SLQLVYDLRLELPADCRKPSLFHVDERLEGEELVACLERRRPDIYLLPLNQGRPSGEL
                     LTLRRGELTPISTRGLWLSESFAAQDGWLVRDERIRWRDWLARLSQAEREPGRLVG"
     gene            complement(511..1932)
                     /gene="hldE"
                     /locus_tag="VLF16_07595"
     CDS             complement(511..1932)
                     /gene="hldE"
                     /locus_tag="VLF16_07595"
                     /EC_number="2.7.1.167"
                     /EC_number="2.7.7.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016495080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase/D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase HldE"
                     /protein_id="HSX70784.1"
                     /translation="MKLSMPRYDQAPVLVVGDVMLDRYWHGGTSRISPEAPVPVVKVE
                     QIEDRPGGAANVALNIAALGAPALLVGVTGEDEAADSLTDSLNAAGVSAHFQRIDTQP
                     TIVKLRVMSRHQQLLRMDFEEPFATDAEALAREVDGLLGGVKVMVLSDYGKGALKNHQ
                     ALIQLARAKGIPVLADPKGKDFSIYRGASLITPNLNEFETIVGHCADEAELVAKGAEL
                     MRELELGALLVTRGEHGMTLLRPDHAPLHLPARAREVFDVTGAGDTVISTLAASIAAG
                     EELPQAVALANLAAGIVVGKLGTAAISAPELRRAVQREQGSERGVLGLEQLLVAIEDA
                     RAHGEKIVFTNGCFDILHAGHVTYLEQARAQGDRLVLAVNDDASVSRLKGPGRPINSV
                     DRRMAVLAGLGAVDWVVSFSEDTPENLLRAVRPDVLVKGGDYGIDQVVGADIVRAYGG
                     EVRVLGLVENSSTTAIVEKIRSK"
BASE COUNT          340 a          791 c          770 g          362 t
ORIGIN      
        1 gccctacccg ctgcgctacc gcgagggcag ccatttccgc ctgagcccgc tgtccggctc
       61 cgcacgtcca gtgcagtgcg gcaacctgat gctgatggag cgcccgcgtg cctacgtgca
      121 cctgcccacc gcctcgctgc aactggtcta cgacctgcgc ctggaactgc cagccgattg
      181 ccgcaagccc agcctgttcc atgtcgacga acgcctggag ggcgaggagc tggtggcctg
      241 cctggagcgg cgccgtccgg acatctacct gttgccgctg aatcagggca ggccgagcgg
      301 cgaactgctc accctgcgcc gcggagaact gacgcctatc agcacccgcg gcctgtggct
      361 atcggagagt ttcgccgcgc aggacggctg gctggtacgc gacgagcgca tccgctggcg
      421 ggactggctg gcgcgcctga gccaggcgga gagagagccc ggccgcctgg tcggctgagg
      481 ggagcggccg ccgcagggcg gccgcgggca tcacttgctg cggattttct cgacgatggc
      541 ggtggtcgag ctgttttcca ccaggccgag cacccgcact tcgccgccgt aggcgcggac
      601 gatgtcggcg ccgaccacct ggtcgatgcc gtagtcgccg cccttgacca gcacgtccgg
      661 gcgcaccgcg cgcagcaggt tttccggggt gtcctcgctg aagctcacca cccagtccac
      721 cgcaccgagg ccggcgagca cggccatgcg ccggtccacc gaattgatcg gtcggcccgg
      781 gcccttgagg cgcgagaccg aggcatcgtc gttgaccgcg agcaccaggc gatcgccctg
      841 ggcgcgggcc tgctccagat aggtcacgtg gccggcatgc aggatgtcga agcagccgtt
      901 ggtgaagaca atcttctcgc cgtgggcgcg ggcgtcctcg atggccacca gcaactgctc
      961 caggcccagt accccgcgct cggagccctg ctcgcgctgc accgcgcggc gcagctcggg
     1021 ggcgctgatg gcggcggtgc ccagcttgcc gaccacgata cccgcagcca ggttggccag
     1081 ggccacggcc tgcggcagct cctcgccggc ggcgatggag gcggccaggg tggagatcac
     1141 cgtgtcgccg gcgccggtca catcgaacac ctcgcgggcg cgggccggca ggtgcagcgg
     1201 tgcatgatcc gggcgcagca gggtcatgcc gtgctcgccg cgggtcacca gcagcgcgcc
     1261 cagttccagc tcgcgcatca gctcggcgcc cttggccacc agctcggcct cgtcggcgca
     1321 gtggccgacg atggtctcga attcgttgag gttgggggtg atcaggctgg cgccgcggta
     1381 gatggagaag tccttgccct tgggatcggc cagcaccggg atgcccttgg cgcgggccag
     1441 ctggatcagc gcctggtggt tcttcagcgc gcccttgccg tagtcggaca gcaccatcac
     1501 cttgaccccg ccgagcagac cgtcgacctc gcgggccagg gcctcggcgt cggtggcgaa
     1561 gggctcctcg aagtccatgc gcagcagttg ctggtggcgg ctcatgacgc gcagcttgac
     1621 gatggtcggc tgagtgtcga tgcgctggaa gtgggcactc acaccggcgg cgttgagact
     1681 gtcggtgagg ctgtcggcgg cttcgtcctc gccggtcacc ccgaccagca gcgccggcgc
     1741 gccgagcgcg gcgatgttca gcgcgacgtt ggcggcgcca cccgggcgat cctcgatctg
     1801 ctcgaccttg accaccggca ccggcgcctc gggggagatg cgcgaggtgc cgccatgcca
     1861 gtagcgatca agcatgacat cacccaccac cagaacgggg gcttggtcgt aacggggcat
     1921 ggacagcttc atggacacag aactctcggc aggggagcgg caaaatcgct gcggatcata
     1981 gcatgtcggg ccggcagccg agtcagctcg gccgcgcctg gcgccagata tcaagccgcg
     2041 caacagcggt tactgccgct cggcggcgat tgcctttaga atcccccctc cgatatctgg
     2101 cccagtctca gcaatgcacc ctccatcgag tcatcgcctg ccctctctct atgcgccgct
     2161 aagcgacttc atcagcatgc gctggctcac gctcggctac ttcctgcttt tgaccgggct
     2221 gttctggctt ccgaacccca gcgcccacac caaggtgtac tac
//
LOCUS       DATIHC010000466         3527 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36447, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000466 DATIHC010000000
VERSION     DATIHC010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3527
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36447"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..168
                     /locus_tag="VLF16_07600"
     CDS             <1..168
                     /locus_tag="VLF16_07600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease"
                     /protein_id="HSX70785.1"
                     /translation="HHNLKQRFAESRQLKRPVGLNGALQLTGLQFQGQQHRALEDARN
                     TARLLPLIFAP"
     gene            250..531
                     /locus_tag="VLF16_07605"
     CDS             250..531
                     /locus_tag="VLF16_07605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine/purine nucleoside phosphorylase"
                     /protein_id="HSX70786.1"
                     /translation="MFKVNEYFDGTVKSIGFTMAEGPATIGVMAPGEYEFGTAQLEVM
                     HVVAGELIVKLPGSDSWETFAAGSQFTVPGNSKFQLKVAVDTAYLCEYR"
     gene            685..1545
                     /gene="rhtA"
                     /locus_tag="VLF16_07610"
     CDS             685..1545
                     /gene="rhtA"
                     /locus_tag="VLF16_07610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014851022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/homoserine exporter RhtA"
                     /protein_id="HSX70787.1"
                     /translation="MPRATSIALPIALLVVAMTSIQSGASLAKSLFPLVGPEGTTALR
                     LSLAALILCVVMRPWRTRPNFAAWRSLLGYGLSLGAMNLLFYMSLKTIPLGIAVALEF
                     TGPLALALFSSRRLLDFAWIVLAALGLWLLLPDTSASDHLDPLGMALALGAGVCWALY
                     ILFGQKAGAAHGAQTVAFGTVVAALLVFPVGLWQVGGGLFSLDLLPVALAVAVMSSAL
                     PYSLEMIALTRLPARTFSVLMSLEPAIAALSGLIFLSEMLSPTQWLAIGAIILASTGA
                     AATIKPRQHD"
     gene            complement(1665..3443)
                     /locus_tag="VLF16_07615"
     CDS             complement(1665..3443)
                     /locus_tag="VLF16_07615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013715371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HSX70788.1"
                     /translation="MSLLSPDRRQALRLAWRFVAPYRWRLAGALAALLFTAAITLSMG
                     QGIRLLVDQGLATQSQAALNHSIGLFFVLVLALAVGTFSRFYLVSWIGERFVADIRQR
                     VFDHLIGLHPGFYESNRASEIQSRLTADTTLLQTVIGSSLSMALRNGIMLIGGIVLLF
                     VTNAKLSAIVVCSLPLVVAPILLFGRRVRALSRQTQDRVADVGSYIGEILGQIKTVQA
                     YNHQAQDQARFAGTVEAAFATAGKRIRQRAWLITTVIVLVLGAVGAMLWVGGMDVIAG
                     RISGGDLAAFVFYSLIVGMAFGAISEVIGELQSAAGAAERIAELLRTRNLITAPPEGE
                     RLHLPERVSGALELRGVRFSYPSRPEHPAIDGIDLSVRAGETLALVGPSGAGKSTLFD
                     LLLRFFDPQEGEVLVEGLPIRRLDPADLRRCFALVSQNPALFYGSVADNLRYGRPDAS
                     DAEVEAAARAAHAHEFIERLPQGYQTHLGEAGLGLSGGQRQRLAIARALLTDAPILLL
                     DEATSALDAESEHLIQQALPGLMRGRTTLVIAHRLATVKNADRIAVIDRGRLQAIGSH
                     GELVQSNPLYARLAQLQFNTERRERD"
     gene            complement(3440..>3527)
                     /locus_tag="VLF16_07620"
     CDS             complement(3440..>3527)
                     /locus_tag="VLF16_07620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005739052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thiol-disulfide oxidoreductase DCC family
                     protein"
                     /protein_id="HSX70789.1"
                     /translation="NRYRLFGRYDSCLLPDPDHDRRFLESRP"
BASE COUNT          542 a         1242 c         1200 g          543 t
ORIGIN      
        1 caccacaacc tcaagcagcg cttcgccgag agccgccaac tcaagcgccc ggtggggctg
       61 aacggtgctc tgcagctgac cgggctgcag ttccagggcc agcagcatcg cgcgctggaa
      121 gacgcgcgca acaccgcacg cctattgcca ctgatatttg ccccctgaat cagcgggttg
      181 cagagctgac ggcgcccttc gccttgggca tactggcggg cctttttagc ccctcccgag
      241 gaacccgcca tgttcaaggt caacgaatac ttcgacggca ccgtcaaatc catcggcttc
      301 accatggccg aaggcccggc caccatcggc gtgatggccc ccggcgagta cgaattcggc
      361 accgcccagc tggaagtgat gcatgtggtg gccggcgagc tgatcgtcaa gctgccgggc
      421 agcgacagct gggaaacctt cgccgccggc agccagttca ccgtgccggg caacagcaag
      481 ttccagctga aggtcgccgt agacaccgcc tacctctgcg aatatcgctg agtcgggccg
      541 cttgaacgaa ccggccctcg tggccggttt ttttattggc catccgttgg ccacgcgccg
      601 tcgtaggctg cgccgcaccg acaggccgac accgtgccaa ggtgcgcaca gcgcacccta
      661 ctagcgcttc cctggattct ccccatgcct cgcgccacct cgatagcgtt gcccatcgcc
      721 ctgctggtgg tcgccatgac atccatccag agcggcgcct ccctggccaa gagcctgttc
      781 ccgctggtcg gccccgaggg caccaccgcg ctgcgcctga gcctggcggc gctgatcctc
      841 tgcgtggtca tgcgcccctg gcgcacgcgt ccgaacttcg ccgcgtggcg ctccctgctc
      901 ggttacggac tgtcgctggg ggcgatgaac ctgctgttct acatgtcgct gaagaccatc
      961 ccgctgggca tcgccgtcgc cctggagttc accggcccgc tggccctggc gctgttctcc
     1021 tcgcgccgcc tgctggactt cgcctggatc gtcctggccg cgctcggcct ctggctgctg
     1081 ctgccggaca ccagcgccag tgaccacctc gacccgctcg gcatggccct ggccctgggc
     1141 gccggggtct gctgggcgct gtacatcctc ttcgggcaga aggccggtgc cgcccacggc
     1201 gcgcagaccg tggcattcgg caccgtggtc gccgccctgc tggtgttccc ggtggggctc
     1261 tggcaggtcg gcggcgggct gttttcgctg gacctgctgc cggtggcact ggccgtggcg
     1321 gtgatgtcct cggccctgcc ctacagcctg gaaatgatcg ccctcacccg cctgccggca
     1381 cgcaccttca gcgtgttgat gagcctggag ccggccatcg ccgcgctctc cggcctgatc
     1441 ttcctcagcg agatgctcag cccgacccag tggctggcga tcggcgccat catcctcgcc
     1501 tcgacgggcg cggcggcgac catcaagcca cggcagcacg actgagcaga ggcggcgccg
     1561 gccaccccca tcgccggcgg gcatggcgcc acgatgcaga tcggctggcg gagcatcacc
     1621 cggcgaagtt gcccaccacg cagagattcc tttgcgcctt ggcctcagtc gcgctcgcga
     1681 cgctcggtgt tgaattgcag ctgcgccagg cgggcgtaca gcggattgct ctgcaccagc
     1741 tcgccatggc tgccgatggc ctgcaggcgg ccgcggtcga tcaccgcgat gcggtcggcg
     1801 ttctttaccg tggccaggcg atgagcgatg accagggtgg tgcgcccacg catcagtccc
     1861 ggcaaggcct gctggatcag gtgttcgctc tcggcgtcca gcgcgctggt ggcctcgtcg
     1921 agcagcagga tcggcgcgtc ggtgagcagc gcgcgggcaa tcgccaggcg ctggcgctgg
     1981 ccgccggaga ggccgagccc cgcctcgccc aggtgggtct ggtagccctg cggcaggcgc
     2041 tcgatgaatt cgtgggcatg cgccgcacgc gccgccgcct cgacctccgc gtcgctggcg
     2101 tcgggccggc cgtagcgcag gttgtccgcc acgctgccgt agaacagcgc cgggttctgc
     2161 gacaccagcg caaaacagcg gcgcagatcg gccggatcga ggcgccggat cggcagcccc
     2221 tcgaccaaca cctcgccctc ctgcgggtcg aagaagcgca gcagcaggtc gaacagggtc
     2281 gacttgccgg cgccggaggg accgaccagc gccagggtct cgccggcgcg cacgctcaga
     2341 tcgatgccat cgatggccgg gtgttccggg cgactcggat aactgaagcg cacgccgcgc
     2401 agctcgagcg cgccgctgac ccgctcgggc aggtgcagcc gctcgccttc cggcggagcg
     2461 gtgatcaggt tgcgcgtgcg cagcagctcg gcgatgcgtt cggcggcgcc ggccgcgctc
     2521 tgcagttcgc cgatcacctc gctgatagcg ccgaaggcca tgccgacgat caggctgtag
     2581 aacacgaacg cggccaggtc gccgccgctg atgcgcccgg cgatcacgtc catgccgccg
     2641 acccagagca tggcgcccac cgcacccagc acgaggacga tgaccgtggt gatcagccag
     2701 gcgcgctggc ggatgcgctt gccggcggtg gcgaaggccg cctccaccgt gccggcgaag
     2761 cgcgcctggt cctgggcctg gtggttgtag gcctgcaccg tcttgatctg gcccaggatc
     2821 tcgccgatgt agctgcccac gtcggcgacc cggtcctggg tctgccggga caacgcgcgc
     2881 acccttcggc cgaagagcag gatcggcgcc accaccagcg gcaacgaaca gaccacgatg
     2941 gcgctgagct tggcgttggt gacgaacagc aggacgatgc cgccgatcag catgatgccg
     3001 ttgcgcaggg ccatggacag cgacgagccg atcaccgtct gcagcagcgt ggtgtcggcg
     3061 gtcagccgcg actggatctc cgaggcgcgg ttgctctcgt agaagcccgg gtgcaggccg
     3121 atcaggtggt cgaacacgcg ctggcggata tcggcgacga aacgctcgcc gatccagctg
     3181 accaggtaga aacggctgaa ggtgccgacg gccagggcca gcaccagcac gaagaacagg
     3241 ccgatggaat ggttgagcgc cgcctgcgac tgagtcgcca ggccctggtc caccagcagg
     3301 cgaatgccct ggcccatgga cagggtgatg gcggcggtga acagcagcgc cgccagggcg
     3361 ccggccaggc gccagcggta cggcgcgacg aagcgccagg ccaggcgcag tgcctggcgc
     3421 cggtccggag acagcaggct catgggcggg actcgaggaa acggcggtcg tggtccgggt
     3481 ccggcagcag gcaactgtcg tagcggccga acagacggta gcggttc
//
LOCUS       DATIHC010000467         1672 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_3652, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000467 DATIHC010000000
VERSION     DATIHC010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1672
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3652"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(17..478)
                     /locus_tag="VLF16_07625"
     CDS             complement(17..478)
                     /locus_tag="VLF16_07625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/EbsC family protein"
                     /protein_id="HSX70790.1"
                     /translation="MSLESVRRFFAEKAPHIDIIELETSTATVTLAAEAHGVEPGRIA
                     KTLAFRVGERNLLVVARGDARLDNRKLKETFGAKARMLDAETVQALTSHPVGGVCPFG
                     LATELPVYVDRSLQAFDEVLPAAGALHSAVRICPRQMAKLVDGEWVDVCQD"
     gene            complement(545..1156)
                     /locus_tag="VLF16_07630"
     CDS             complement(545..1156)
                     /locus_tag="VLF16_07630"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009615990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSX70791.1"
                     /translation="MNFYDDKILPRLIDFACGMGQVMKTRAQIIPMAEGRVLEIGIGT
                     GLNLSFYDREKVSAIVGVDPAAQMQSLARQRAANIGIPVEMIALELGQIQTADASFDS
                     IVCTFTLCTIPDPLAALQEMRRVLKPGGKLLFSEHGRAPDAGVRAWQDRITPLWKPLA
                     GGCHLNRDIPALLGAGGFHIREVQSSYLQGPRPMTWVWRGWAD"
     gene            complement(1156..>1672)
                     /locus_tag="VLF16_07635"
     CDS             complement(1156..>1672)
                     /locus_tag="VLF16_07635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020295266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HSX70792.1"
                     /translation="AEHAHLDNPVGQLADLLPQLDGRIDAAFCCLGTTIKQAGSQEAF
                     RAVDHDLVLAFARRARELGARHFLVVSAMGANAQSSVFYNRVKGEVEEALKAMDWPQL
                     TIARPSLLLGPRREFRLGERLAAPLLRWIPGRYRGIEAAVLARAMWRLALEESDGVRV
                     VESDQLRRLGR"
BASE COUNT          240 a          573 c          607 g          252 t
ORIGIN      
        1 ggcgcacgca acgcgttcag tcctggcaca cgtccaccca ctcgccgtcc accagtttgg
       61 ccatctgccg cgggcagatg cgcacggcgc tgtgcagggc gccggcggcc ggcagcacct
      121 cgtcgaaggc ctgcagcgac cggtcgacat acaccggcag ctcggtggcc aggccgaacg
      181 ggcagacgcc gccgaccgga tggctggtca gcgcctgcac cgtctcggcg tcgagcatcc
      241 tggccttggc gccgaaggtc tccttgagct tgcggttgtc cagccgcgcg tcgccgcggg
      301 ccaccaccag caggttgcgt tcgccgacgc ggaaggccag ggtcttggcg atacgccccg
      361 gctccacgcc atgggcctcg gcggccaggg tgacggtggc ggtgctggtc tccagctcga
      421 tgatgtcgat gtgcggcgcc ttctcggcga agaagcggcg gaccgattcc aggctcatgc
      481 ggggcttcct tctggcaaaa gcgccatgct tgccggcgcg ctggggtgcg tcaacccgcg
      541 ggcgtcagtc ggcccagccg cgccagaccc aggtcatcgg ccgcgggccc tgcaggtagc
      601 tgctctgtac ttcgcggata tggaaaccac cggcgccgag cagggcgggg atgtcgcggt
      661 tgagatggca gccgccggcc agcggcttcc acagcggggt gatgcggtcc tgccaggcgc
      721 gcacgccggc gtccggcgcg cggccgtgct cgctgaacag cagtttgccg ccgggcttga
      781 gcacccggcg catctcctgg agcgcggcca gcggatcggg gatggtgcac agggtgaagg
      841 tgcagacgat gctgtcgaag ctggcgtcgg cggtctggat ctgccccagc tcgagggcga
      901 tcatttccac cgggatgccg atgttcgccg cgcgctggcg cgccaggctc tgcatctgcg
      961 cggccgggtc cacgccgacg atggcgctga ccttttcgcg gtcgtagaag ctgaggttga
     1021 ggccggtgcc gataccgatc tccagcaccc ggccctccgc catggggatg atctgggcgc
     1081 gggtcttcat cacctggccc atgccgcagg cgaagtcgat cagccgcggc aggatcttgt
     1141 cgtcgtagaa attcatcagc gccccaggcg gcgcagctgg tcggactcca ccacccgaac
     1201 cccgtcgctc tcctccaggg ccaggcgcca catggcgcgg gccagcacgg cagcctcgat
     1261 gccgcgatag cggccgggaa tccagcgcag cagcggcgcg gccaggcgct cgccgaggcg
     1321 gaactcgcgg cgcgggccaa gcagcaggga cgggcgggcg atggtcagct gcggccagtc
     1381 catcgccttc agcgcctctt ccacctcgcc cttgacccgg ttgtagaaca ccgatgattg
     1441 ggcgttggcg cccatggcgc tgaccaccag gaaatgccgc gcgccgagct cgcgggcgcg
     1501 gcgggcgaag gccagcacca ggtcgtggtc gacggcgcgg aaggcctcct gggagccggc
     1561 ctgcttgatg gtggtgccca ggcagcagaa cgctgcgtcg atgcggccat cgagttgggg
     1621 tagcagatcg gcgagctgcc cgaccgggtt gtccaggtgc gcgtgctcgg cc
//
LOCUS       DATIHC010000468         2426 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_41141, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000468 DATIHC010000000
VERSION     DATIHC010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2426)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2426)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2426
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41141"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..404)
                     /locus_tag="VLF16_07640"
     CDS             complement(<1..404)
                     /locus_tag="VLF16_07640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2058 family protein"
                     /protein_id="HSX70793.1"
                     /translation="MSLSLRDQLLKAGLVNEKQAKQATKQKQKQQRLEKKNQVEVDDS
                     QQQAVQQAKAEKLAKDQELNREQQEKAQQKAIAAQIKQLIESARLPKLTTEDYYNFVD
                     DKKVKRLSVNNLMRDKLSRGSLAIVRHGGGYEV"
     gene            complement(425..1264)
                     /gene="mazG"
                     /locus_tag="VLF16_07645"
     CDS             complement(425..1264)
                     /gene="mazG"
                     /locus_tag="VLF16_07645"
                     /EC_number="3.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
                     /protein_id="HSX70794.1"
                     /translation="MPDRYSLDDLLHLMARLRDPQHGCPWDLKQSYATIVPHTLEEAY
                     EVADAIERGDFAHLPGELGDLLFQVVYYSQLAKEEERFDFATVVDAITRKLVRRHPHV
                     FPDGDLYGAPDMARLEEAAIKQRWEEIKAEERAEQAAAPEQLSLLDDVPHALPALSRA
                     AKLQKRAAQVGFDWSEALPVVDKLREELDEVLEAMSENDAEAVAEEIGDLLFVGVNLA
                     RHLKVDPESALRAANAKFERRFRFIEQALRDAGRPIEDCTLEELDALWGEAKKQEKLS
                     LGC"
     gene            complement(1288..>2426)
                     /locus_tag="VLF16_07650"
     CDS             complement(1288..>2426)
                     /locus_tag="VLF16_07650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017527554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TGS domain-containing protein"
                     /protein_id="HSX70795.1"
                     /translation="TDVKGGSDHYEEKMAWLRQVLEWHEELGDIGGLAEQLRVDIEPD
                     RVYVFTPDGHAIDLPKGATPLDFAYRVHTQIGHNCRGAKVNGRIVPLTYSLQTGEQVE
                     IITSKQGAPSRDWLNSNLGYVTTSRARAKIVHWFKLQDREQNVAAGKAMLERDLARLA
                     LAAVDYAKLAEKCNLRTAEDMYAALGAGDLRLAHAVNLAQQLVEPERGSEQLELIPRR
                     MPSQRLGKRGDIQIEGVGNLLTQMAGCCQPLPGDPIVGYITQGRGVSIHRQDCASVLQ
                     LAGREPERIIQVSWGPVPVLTYPVDIVIKAYDRSGLLRDVSQVLLNDRINVLAVNTRS
                     NKEDNTASMQLTIEIPGLDALSRLLARISQLPNIIEVRRNRSGT"
BASE COUNT          334 a          797 c          813 g          482 t
ORIGIN      
        1 acctcgtagc cgccgccgtg acggacgatg gccagcgagc cgcggctcag cttgtcgcgc
       61 atcaggttgt tcaccgacag gcgcttgacc ttcttgtcgt cgacgaagtt gtagtagtcc
      121 tcggtggtca gcttgggcag acgggcgctc tcgatgagct gcttgatctg cgcggcgatg
      181 gccttctgct gcgccttttc ctgctgttcg cggttcagct cctggtcctt ggccagcttc
      241 tcggccttgg cctgctgcac cgcctgctgc tgggaatcgt ccacctcgac ctggttcttc
      301 ttctccaggc gttgctgttt ctgtttctgc ttggtggcct gcttggcctg cttttcattg
      361 accaggccgg ctttcagcag ctggtcacgg agggaaaggc tcatgaacgg ttcagtctct
      421 cgagttaaca gccaaggctg agtttttcct gtttcttggc ttcgccccac agggcatcca
      481 gttcttccag ggtgcaatct tcaatgggac gccccgcatc gcgcaacgcc tgttcgatga
      541 aacggaaacg ccgctcgaac ttggcgttgg ccgcgcgcag ggcactctcc gggtcgacct
      601 tgaggtggcg cgccaggttt acgccgacga acaggagatc gccgatctct tcggcgacgg
      661 cctcggcgtc gttctcgctc atcgcttcca gcacttcgtc cagctcctcg cgcagcttgt
      721 cgaccaccgg cagcgcctcc gaccagtcga agccgacctg cgccgcgcgc ttctgcagct
      781 tggcggcgcg actcagcgcc ggcagggcgt ggggcacatc gtcgagcagc gacagctgct
      841 ccggcgcggc ggcctgttcg gcgcgctcct cggccttgat ttcttcccag cgctgcttga
      901 tcgccgcctc ctccagccgc gccatgtccg gtgcgccgta caggtcgcca tcggggaaca
      961 cgtggggatg gcggcgcacc agtttgcggg tgatggcgtc gaccacggtg gcgaagtcga
     1021 aacgctcctc ctctttcgcc aactggctgt agtagacgac ctggaacaac aggtcgccca
     1081 gctcgccggg caggtgggcg aagtcgccgc gctcgatggc atcggccacc tcgtaggcct
     1141 cctcgagggt gtgcggcacg atggtcgcgt agctctgctt caggtcccag gggcagccgt
     1201 gctgcgggtc acgcagacgg gccatcaggt gcagcaggtc gtcgagggaa taacggtcgg
     1261 gcatgaatcg gtctctggga gagggcatca ggtgccggaa cggttgcggc ggacctcgat
     1321 gatattgggc agctggctga tgcgcgccag cagacgcgac aaggcgtcca gtcccgggat
     1381 ctcgatggtc agctgcatgg aggcggtgtt gtcctccttg ttcgagcggg tgttcaccgc
     1441 cagcacgttg atgcggtcgt tgagcagcac ctgggacacg tcgcgcagca ggccggaacg
     1501 gtcgtaggcc ttgatcacga tgtccaccgg gtaggtcagt accggcaccg ggccccagct
     1561 cacctggatg atccgctccg gctcgcggcc ggccagctgc agcaccgagg cgcagtcctg
     1621 gcggtggatg gacacgccgc ggccctgggt gatgtagccg acgatcgggt cgcccggcag
     1681 tggctggcag cagccggcca tctgcgttag caggttgccg acgccctcga tctggatgtc
     1741 gccgcgcttg cccaggcgct ggctcggcat ccggcgcggg atcagctcga gctgctcgct
     1801 gccacgctcc ggctccacca gttgctgcgc caggttcacc gcgtgggcca ggcgcagatc
     1861 gccggcgccg agcgccgcgt acatgtcctc ggcggtgcgc aggttgcact tctcggccag
     1921 cttggcgtaa tccaccgccg ccagcgccag gcgcgccaga tcgcgctcga gcatggcctt
     1981 gccggcggcc acgttctgct cgcggtcctg cagcttgaac cagtggacga tcttggcccg
     2041 cgcccggctg gtggtgacgt agccgaggtt ggagttgagc cagtcgcggc tcggcgcgcc
     2101 ctgcttggag gtgatgatct ccacttgctc gccggtctgc aggctgtagg tcagtggcac
     2161 gatgcggcca ttgaccttgg ccccgcggca gttgtggccg atctgcgtgt gcacgcggta
     2221 ggcgaagtcc agcggcgtgg cgcccttggg caggtcgatg gcgtggccgt ccggggtgaa
     2281 cacatagacc cggtcgggct cgatatccac gcgcagctgc tcggccaggc cgccgatgtc
     2341 gcccagctcc tcgtgccact ccagcacctg gcgcagccaa gccatcttct cttcgtagtg
     2401 gtcggagccg cccttgacgt cggtac
//
LOCUS       DATIHC010000469         2757 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10647, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000469 DATIHC010000000
VERSION     DATIHC010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2757)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2757)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2757
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10647"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..757
                     /gene="asd"
                     /locus_tag="VLF16_07655"
     CDS             <1..757
                     /gene="asd"
                     /locus_tag="VLF16_07655"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003246535.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004609 - phosphatidylserine decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="archaetidylserine decarboxylase"
                     /protein_id="HSX70796.1"
                     /translation="RLIGWFARQYQVNMAEAQVEELTAYEHFNAFFTRALKDGARPLD
                     ETPGAILCPADGAVSQLGPIEQGRCFQAKGHSFSVLELLGGDAERAAPFMGGDFATVY
                     LSPKDYHRVHMPLAGTLREMVYVPGRLFSVNQTTAENVPELFARNERVVCLFDTERGP
                     MAVVLVGAMIVASIETVWAGLVTPPKRELKTTRYDESARGAIELAKGAELGRFKLGST
                     AIVLFGPQQVQWAEELVAGSPVRMGQNMGSARV"
     gene            928..2745
                     /locus_tag="VLF16_07660"
     CDS             928..2745
                     /locus_tag="VLF16_07660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003095679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HSX70797.1"
                     /translation="MDKQSPHLLLRAPTPDRQGLSFCEATPRDVKRWIAGLPKANIGE
                     TARQLYQGLIELNQLITPSDNRLQLMELLRPEVHFVCTHLERHFLNQSIVLDERPRKV
                     ANLCQALQNHMAIGYKLIILQELPRLTKDRTQLLAVSLQRASHALLGPLVRASQLYCP
                     VPEGLWLELHQMSRLARQHGLHQVQVRDGLARNGKSLSQEQIYLSALLLGCARCNQMR
                     QSGIARLAEALEDWSALARLERVDSPNSLFAIAPQLDGPPRYKSLFGDNELHSLIGLD
                     PHALVDALKEYLLLPPDSTEPRRLPIPEGMTVDLLQHLASAWGDIAERTFQRNPGRGV
                     LTLCIGMSALHFNLAGKRKFADVLKQEEAPRSAEFKAAKLGAGSGPDVWANAFDAQRN
                     SQWEYGLPLEEIQYKAAAKPGDPPPEEAAESYPSHELAIVNHSPGGYCLTWPREVPPQ
                     LQAGELLGVQDSPDSAWSVAVVRWIRQVRGGGTQMGIELIAPHAQPCGVQLVRKSEQN
                     SQYLRALLLPEIRVISRAATLITPRLPFQESNKVVINHNGEETRAVLSRKQTSTGSFS
                     QFEYRVIGEAPATTGTSVTATKAPGKGGEEDFDSLWKSL"
BASE COUNT          487 a          997 c          869 g          404 t
ORIGIN      
        1 ccgcctgatc ggctggttcg ccagacagta ccaggtcaac atggccgagg cgcaggtgga
       61 agagctcacc gcctacgagc acttcaacgc cttcttcacc cgcgccctga aagacggcgc
      121 ccgcccgctg gacgaaacgc ccggcgccat cctctgcccg gccgacggcg cggtcagcca
      181 gctcgggccg atcgagcagg gtcgctgctt ccaggccaag ggtcacagct tcagcgtgct
      241 ggagctgctc ggcggcgatg ccgagcgcgc cgcaccgttc atgggtggcg acttcgccac
      301 cgtctacctg tcgccgaagg actaccaccg cgtgcacatg ccgctggcgg gcaccctgcg
      361 tgagatggtc tacgtgccgg gccgcctgtt ctcggtcaat cagaccaccg cggagaacgt
      421 gcccgaactg ttcgcccgca acgagcgggt ggtctgcctg ttcgacaccg aacgcgggcc
      481 gatggccgtg gtgctggtcg gcgccatgat cgtcgccagc atcgagacgg tctgggccgg
      541 tcttgtgacc ccaccgaagc gcgagctgaa gaccacgcgc tacgacgagt ccgcccgtgg
      601 cgccatcgag ctggccaagg gtgccgagtt gggccgcttc aagctcggct ccaccgccat
      661 cgttctgttc gggccacagc aggtgcagtg ggccgaggag ctggtcgccg gcagcccggt
      721 acgcatgggc cagaacatgg gttcggcgcg ggtctgaccc agccacctgc ggcccgcgga
      781 aggaacgtcc agcgggccgc ggagtcctaa tcggcatgac tccgcatttg ccggcggcaa
      841 ggctgcggct ccgctgcgat gctgctagag ttccgaaaac acccggcgaa ggttcgcctt
      901 ccgcctgcta cggactttcc tcccggtatg gataaacaga gccctcacct gctcctgcgc
      961 gcacctaccc ccgaccgaca gggcctgtcc ttctgtgagg ccactccccg tgacgtgaaa
     1021 cgctggatcg ccggcctgcc caaggccaac atcggcgaga cggcgcgcca gctgtaccag
     1081 ggcctgatcg aactgaatca gctgatcacc cccagcgaca accgcctgca gctcatggag
     1141 ctgctgcgcc ccgaggtgca cttcgtctgc acccaccttg agcgacactt cctcaaccag
     1201 tccatcgtcc tcgacgagcg cccgcgcaag gtcgccaacc tgtgccaggc gctgcagaac
     1261 cacatggcga tcggctacaa actgatcatc ctccaggaac tgccgcgcct gaccaaggac
     1321 cgcacccagc tgctggccgt ttccctgcag cgtgccagcc acgccctgct cggccccctg
     1381 gtgcgggcca gccagctgta ctgccccgtg cccgaggggc tgtggctgga gcttcatcag
     1441 atgtcgcgcc tcgcccgtca gcacggcctg catcaggtgc aggtgcgcga cggcctggcg
     1501 cgcaacggca agagcctcag ccaggaacag atttacctct ccgcgctgct gctcggctgc
     1561 gcccgctgca accagatgcg ccagagcggc atcgcccgcc tggccgaggc gctggaagac
     1621 tggagcgccc tggcccgact ggagcgcgtc gactcgccga acagcctgtt cgccatcgcc
     1681 ccgcaactgg acggcccgcc gcgctacaag tcgctgttcg gcgacaacga actgcacagc
     1741 ctgatcggcc tcgacccgca tgccctggtc gacgcgctga aggaatatct gttgctgcct
     1801 ccggacagca ccgaaccgcg ccgcctgccg ataccggaag gcatgaccgt cgacctgctg
     1861 cagcatctgg cctcggcctg gggcgatatc gccgagcgca ccttccagcg caaccccggc
     1921 cgcggcgtgc tgaccctgtg catcggcatg tcggccctgc atttcaacct ggccggcaag
     1981 cgcaagttcg ccgacgtcct caagcaggaa gaagcgccgc gcagcgccga gttcaaggcc
     2041 gccaagctcg gcgccggcag cggcccggac gtctgggcca acgccttcga cgcccagcgc
     2101 aacagccagt gggaatatgg cctgccgctg gaagagatcc agtacaaggc cgccgccaag
     2161 cccggcgatc cgccgcccga ggaagccgcc gagagctacc ccagccacga gctggccatt
     2221 gtcaaccaca gccccggcgg ctactgcctg acctggccca gggaggtccc tccccagcta
     2281 caggccggcg agctgctcgg cgtgcaggac agccccgact cggcctggag cgtggcggtg
     2341 gtgcgctgga tccgccaggt gcgcggcggc ggcacgcaga tgggcatcga gctgatcgcc
     2401 ccgcacgctc aaccctgcgg tgtgcagttg gtgcgcaaga gcgagcagaa cagtcaatat
     2461 ctgcgcgccc tgctgctgcc ggaaatccgc gtgatctcgc gggcggcgac gctgatcacg
     2521 ccgcgcctgc cgttccagga aagcaacaag gtggtgatca accataacgg cgaggaaacc
     2581 cgcgccgtac tcagccgcaa acagaccagc acgggcagtt tcagccagtt cgaataccgc
     2641 gtgatcggcg aagcgccggc gacgaccggg acctccgtca cagccacgaa agcccccggc
     2701 aagggcggcg aggaagactt tgactcactc tggaagtcgc tgtagattgc cggaaca
//
LOCUS       DATIHC010000470         2014 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31629, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000470 DATIHC010000000
VERSION     DATIHC010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2014
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31629"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..341)
                     /locus_tag="VLF16_07665"
     CDS             complement(<1..341)
                     /locus_tag="VLF16_07665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004373442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HSX70798.1"
                     /translation="MAKLTKRQKAIAEKVEAGKAYSFEEAAQLLAELSTVKFTESFDV
                     SVNLGVDPRKSDQVVRGATVLPNGTGKTVRVAVFTQGPGAEAALAAGADKVGMDDLAA
                     EMKAGDLNYDVV"
     gene            complement(341..772)
                     /gene="rplK"
                     /locus_tag="VLF16_07670"
     CDS             complement(341..772)
                     /gene="rplK"
                     /locus_tag="VLF16_07670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HSX70799.1"
                     /translation="MAKKIQAYIKLQVKAGQANPSPPVGPALGQHGVNIMEFCKAFNA
                     KTQGMEPGLPTPVIITVYSDRSFTFETKSTPASVLLKKAAGLTSGSARPNTVKVGTVT
                     RAQLEEIAKAKQADLTAADLDAAVRTIAGSARSMGLNVEGV"
     gene            complement(892..1425)
                     /gene="nusG"
                     /locus_tag="VLF16_07675"
     CDS             complement(892..1425)
                     /gene="nusG"
                     /locus_tag="VLF16_07675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010490903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HSX70800.1"
                     /translation="MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDEFGEILVPTEE
                     VVEMRNGQKRKSERKFFPGYVLVQMEMNEATWHLIKDTPRVMGFIGGTADKPAPITEK
                     EADAILRRVADSGDKPKPKTLFEPGETVRVTDGPFADFNGVVEEVNYEKSRIQVAVLI
                     FGRSTPVELEFSQVEKA"
     gene            complement(1435..1803)
                     /gene="secE"
                     /locus_tag="VLF16_07680"
     CDS             complement(1435..1803)
                     /gene="secE"
                     /locus_tag="VLF16_07680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HSX70801.1"
                     /translation="MDAKAEAQNSRFDALKWLVVVALVVAGVVGNQYFSAEPLLYRVL
                     ALLALAVVVGFVALQTAKGQVFFALAKEARIEIRKVVWPTRQETTQTTLIVVAVVLVM
                     SLVLWGLDSLLGWLVSLIVG"
     gene            complement(1853..1928)
                     /locus_tag="VLF16_07685"
     tRNA            complement(1853..1928)
                     /locus_tag="VLF16_07685"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1893..1895),aa:Trp,seq:cca)
BASE COUNT          426 a          631 c          560 g          397 t
ORIGIN      
        1 accacgtcgt agttcagatc gccagccttc atttcggcag ccaggtcgtc catgccgact
       61 ttgtcggcgc cggcggccag agcagcctca gcgcccggac cctgggtgaa cacggcaacg
      121 cggacggtct tgccagtgcc gttcggcaga acggtggcgc cacgcacgac ctggtcggat
      181 ttacgcggat caacgcccag attcacggag acgtcgaagg actcggtgaa cttgacggtg
      241 gacagctcgg ccagcagttg agcggcctct tcgaagctgt atgccttgcc ggcttcgact
      301 ttctcggcga tagccttctg gcgcttggtc agcttagcca ttacacaccc tccacgttca
      361 ggcccatgct acgcgcggag ccggcgatgg tacgcacggc cgcatccagg tcagctgcag
      421 tcagatcggc ctgcttggcc ttggcgatct cttccagctg agcacgggta acggtgccca
      481 ctttgacggt gttcggacga gcggaaccgc tggtcaggcc ggcggccttc ttcagcagaa
      541 ccgaagccgg ggtgcttttg gtttcaaagg tgaagctgcg gtcgctgtaa acggtgatga
      601 tcacaggagt cggcagacca ggttccatgc cctgagtctt ggcgttgaac gccttgcaga
      661 attccatgat gttcacgcca tgctgaccca gagcagggcc gacgggcggc gacgggttgg
      721 cctggccggc ctttacttgc agcttgatgt aagcctgaat cttcttagcc atgagctact
      781 ccaatttcgg gtcagacgcc tcggcgaggc tccccggttg atgacgcatt tatcccagtg
      841 acgacaaaac cccgcagcca gcggctgcgg ggttcgggat gcattgtcca gttatgcctt
      901 ctcgacctga ctgaactcca gctccaccgg cgtggagcga ccgaaaatga gcacagccac
      961 ctggatccgg ctcttttcgt agttaacttc ttcgacgaca ccattgaaat cggcgaacgg
     1021 accgtcggta acgcgaacgg tctcacccgg ctcgaacagg gtcttcggct tcggcttgtc
     1081 accactgtcg gcgactcgac gcaggatagc gtcagcctcc ttctcggtga tcggcgccgg
     1141 cttgtcggcg gtaccgccga tgaaacccat gacgcgcggc gtatccttga tcaggtgcca
     1201 ggtcgcctcg ttcatttcca tctgaaccag cacatagcca gggaagaact tgcgctcgct
     1261 tttgcgcttc tggccgttac gcatttccac cacttcttcg gtgggaacca gaatttcgcc
     1321 gaactcgtct tccatgccag ccagcttgac gcgctcgatc agcgagcgca tgacatgctt
     1381 ctcgtaaccc gagtaagcat gcacgacgta ccaacgctta gccacgggac acccttaacc
     1441 gacaatcaac gaaacaagcc aacccagcag gctatccagg ccccagagga ccagcgacat
     1501 caccagcacc acggcaacca caattaaggt ggtttgcgtg gtttcctggc gagtcggcca
     1561 gacaaccttg cggatctcga tacgcgcttc ttttgccaga gcaaagaaca cctgaccttt
     1621 cgccgtctgc agcgcgacaa aaccgaccac tacggccagc gccagcagtg ccagcacgcg
     1681 atacaggagc ggttcagccg agaaatactg attgccgacc acgcccgcga cgaccagagc
     1741 gactacaacg agccacttca gcgcgtcaaa gcgggagttt tgagcttcag ctttggcatc
     1801 catgagaaaa ccctgtcgaa agaaacgcca gatccacttc taaccaggaa tctggcaggc
     1861 caggagggaa tcgaaccccc aacctgcggt tttggagacc gccgctctgc caattgagct
     1921 actggcctaa aatcgaagta aggccgacca ttatgccggc ctgacgggga cagctcaaga
     1981 tttattcgaa aattttcgca accacgccag cgcc
//
LOCUS       DATIHC010000471         2447 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_19988, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000471 DATIHC010000000
VERSION     DATIHC010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2447)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2447)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2447
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19988"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..235)
                     /locus_tag="VLF16_07690"
     CDS             complement(<1..235)
                     /locus_tag="VLF16_07690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HSX70802.1"
                     /translation="MGIELSLIWAVIIAFSVMMYVVMDGFDLGIGMLYPFFRERGDRD
                     VMMNTVAPIWDGNETWLVLGGAGLFCSFPVAYAV"
     gene            complement(239..1642)
                     /locus_tag="VLF16_07695"
     CDS             complement(239..1642)
                     /locus_tag="VLF16_07695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011912958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0070069 - cytochrome complex [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019646 - aerobic electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HSX70803.1"
                     /translation="MEALDLARIQFAFTISFHILYPAITIGLASYLAVLEALWLKTEK
                     EVYRDLYHFWLKIFAVNFGMGVVSGLVMAYQFGTNWSRFSTFAGSVTGPLLTYEVLTA
                     FFLEAGFLGVMLFGWNRVGPRLHFFATVMVAIGTLISTFWILASNSWMHTPQGYEIID
                     GRVIPVDWLAVIFNPSFPYRLTHMAVAAFLATAFFVGASAAWHLLRGNDNPGVRKMLS
                     MAMWMALLVAPIQAVIGDAHGLNTLQYQPAKIAAIEGHWSNDEPGPTPLILFGWPDME
                     REETRFAVEIPVLGSLILNHSLTEPIPALKDFAPEDRPNSTVVFWTFRIMVGLGLLMI
                     LTGLWSLWLRWRGRLFQSRAFLRLVLAMGPSGLIAILAGWFTTEIGRQPWIVYGLMRT
                     RDAVSAHSVTQLSVTLVTFVVVYFFVFGIGLVYVLRLVRKGPVPHEGRETNDGGAGRP
                     RTPARPLSAPEERVDEG"
     gene            complement(1661..2164)
                     /locus_tag="VLF16_07700"
     CDS             complement(1661..2164)
                     /locus_tag="VLF16_07700"
                     /inference="COORDINATES: protein motif:HMM:NF025013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4142 domain-containing protein"
                     /protein_id="HSX70804.1"
                     /translation="MAHSALPRGAGLWLLLTLCTPLATAAEVDTQRFVEQVVTANLAA
                     NEAAEMALRTSDSADIKDFAQDVVADHPRNNADLETFARERQLQLPSDEQLQQNAKEE
                     VKQLDGDDFDARFAELQVRSYEQRVELFSQAAEKGDTELQSFARTKLPVLKAQLQTAR
                     LLTRAHR"
     gene            complement(2231..>2447)
                     /locus_tag="VLF16_07705"
     CDS             complement(2231..>2447)
                     /locus_tag="VLF16_07705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014591709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSX70805.1"
                     /translation="DDFVPHTTLMSYRAAFIKAHSLTHRIVDGADHSLSSDSAQRAYT
                     TVLTTWISEMVIGARIGDYPHHLAIYS"
BASE COUNT          443 a          760 c          841 g          403 t
ORIGIN      
        1 ccaccgcata ggccaccggg aatgagcaaa acaaacctgc accgcccagc accagccagg
       61 tctcgttgcc gtcccagatc ggcgccacgg tgttcatcat cacgtcgcgg tcgccgcgct
      121 cgcggaagaa cgggtagagc atgccgatgc ccaggtcgaa gccatccatc accacgtaca
      181 tcatcacgct gaaggcgatg atcacggccc agatcagcga cagttcgatg cccatgcgtc
      241 agccctcgtc cacgcgttct tcgggggccg acagcggccg tgccggcgtg cgcggccgcc
      301 cggcgccgcc atcgttggtc tcgcggccct cgtgcggcac cggccccttg cgcaccaggc
      361 gcagcacgta gaccaggccg atgccgaaaa caaagaagta caccaccacg aaggtcacca
      421 gggtcacgct cagttgcgtc acgctgtgcg ccgacaccgc gtcgcgggtg cgcatcaggc
      481 catagacgat ccagggctgg cggccgatct cggtggtgaa ccagccggcc aggatcgcga
      541 tcaggccgct ggggcccatg gccagcacca gacgcaggaa ggcacgcgat tggaacagcc
      601 gtccgcgcca gcgcagccac aggctccaca gcccggtgag gatcatcagc aggccgaggc
      661 cgaccatgat gcggaaggtc cagaacacca cggtggagtt gggtcggtcc tcgggcgcga
      721 aatccttcag cgcgggaatc ggctcggtca ggctgtggtt gaggatcagg ctgccgagta
      781 ccgggatctc cactgcgaag cgcgtttcct cacgctccat gtccggccag ccgaacagga
      841 tcagcggcgt cggcccgggc tcgtcgttgc tccagtggcc ttcgatggcg gcgatcttgg
      901 ccggctggta ctgcagggtg ttgaggccgt gggcatcccc aatcaccgcc tggatcggtg
      961 ccaccagcag ggccatccac atggccatcg agagcatctt gcgcacgccg gggttgtcgt
     1021 tgccgcgcag taggtgccag gccgccgagg cgccgacgaa gaacgccgtg gcgaggaacg
     1081 ccgccaccgc catgtgcgtc agccggtagg ggaaggaggg gttgaagatc accgccagcc
     1141 agtccaccgg gatcacccgg ccatcgatga tctcgtagcc ttggggcgtg tgcatccagc
     1201 tgttggaggc gagaatccag aaggtcgaga tcagcgtgcc gatggccacc atcaccgtgg
     1261 cgaagaagtg caggcgcgga cccacgcggt tccagccgaa cagcatgacg ccgaggaagc
     1321 cggcctcgag gaagaaggcg gtgagcacct cgtaggtcag cagcggcccg gtgacgctgc
     1381 cggcgaaggt ggagaaacgg ctccagttgg tgccgaactg gtaggccatg accaggccgg
     1441 agaccacgcc catgccgaag ttgacggcga agatcttcag ccagaagtgg tagaggtcgc
     1501 ggtagacctc cttctccgtc ttcagccaca gcgcctcgag cacggccagg taactggcca
     1561 gcccgatggt gatggcgggg tagaggatgt ggaacgagat ggtgaaggcg aactggatgc
     1621 gtgccaggtc cagggcttcc atgttggctc cggctcggga ctatcggtgg gcgcgggtca
     1681 acaggcgcgc cgtttgcagc tgcgccttga gtaccggcaa cttggtgcgg gcgaaggact
     1741 gcagctcggt gtcgcccttc tcggcggcct ggctgaatag ttcgacgcgc tgttcgtagc
     1801 tgcgcacctg caactcggcg aagcgcgcat cgaagtcgtc gccgtcgagc tgtttcacct
     1861 cttccttggc gttctgctgc agctgctcgt cgctgggcag ttgcagctgc cgttcgcggg
     1921 cgaaggtctc caggtcggcg ttgttgcgcg gatggtcggc gactacgtcc tgggcgaaat
     1981 ccttgatgtc cgccgagtcg ctggtgcgca gggccatttc cgccgcctca ttggcggcga
     2041 gattggctgt gaccacctgc tcgacgaaac gctgggtgtc gacctcggcg gccgtcgcca
     2101 gcggtgtgca aagggtgagc agcagccaga ggccggcgcc gcgcggaaga gctgaatggg
     2161 ccatggcaat gcctccgtta ttcattgcaa ggactgtgac gagaacaaac ggccccggtt
     2221 caacgtttcc tcaggagtag atcgccagat gatgcgggta gtcgccgatg cgggcgccga
     2281 tgaccatctc gctgatccag gtggtgagta ccgtggtgta ggcgcgctgg gcgctgtcgc
     2341 tgctcagtga atgatcggcg ccatcgacga tgcggtgagt cagcgagtgc gccttgatga
     2401 aggccgcgcg gtagctcatc agcgtggtgt gcggcacgaa gtcgtcg
//
LOCUS       DATIHC010000472         1980 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_6156, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000472 DATIHC010000000
VERSION     DATIHC010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1980)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1980)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1980
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6156"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1092)
                     /locus_tag="VLF16_07710"
     CDS             complement(<1..1092)
                     /locus_tag="VLF16_07710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase TldD-related protein"
                     /protein_id="HSX70806.1"
                     /translation="MSSAQAVGPQALPDLQAQVEQIIAEARRQGASACEVAVSMEQGL
                     STTVRQGEVETVEFNRDQGFGITLYVGQRKGSASTSASGDEAIRETVAAALAIAKHAS
                     EDDCAGLADAALMARDMPDMDLFHPWAISPEQAVERALACEAAAFATDTRISNADGTS
                     LSTHQGCRVYGNSHGFIGGYASTRHSLSCVMIAEGEGQMQRDYWYDVSRQGELLADPA
                     RIGRLAAERSVARLGARPVPTCEVPVLFAPELATGLFGHFLAAISGGNLYRHSSFLEG
                     ALGQRLFPEWLSLDERPHISRAMGSATFDGDGLATYAKPFVDGGELVSYILGTYSGRK
                     LGLPSTANSGGVHNLFVSHGDEDQQALLRR"
     gene            1182..1703
                     /gene="yjgA"
                     /locus_tag="VLF16_07715"
     CDS             1182..1703
                     /gene="yjgA"
                     /locus_tag="VLF16_07715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002555100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis factor YjgA"
                     /protein_id="HSX70807.1"
                     /translation="MADSYDEDFSGEKSKTQIKRELHALQDLGARLTTLKPELIAKLP
                     LSDNLRKALAEAPKHTANAAKKRHIQFIGKLMRDQDIEAITALIDQVDSSTREYNERF
                     HALERWRDRLIAGDDDTLESFVVDYPETDRQHLRSLIRHAQHEAARNKPPAAARKVFK
                     YIRDLDEVQRGLR"
     gene            complement(1751..>1980)
                     /locus_tag="VLF16_07720"
     CDS             complement(1751..>1980)
                     /locus_tag="VLF16_07720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="metallopeptidase TldD-related protein"
                     /protein_id="HSX70808.1"
                     /translation="SEAYLIEDGRITAPVKGATLIGNGPEAMSKVSMVGNDLALDSGV
                     GTCGKDGQSVPVGVGQPTLKIDAITVGGTGA"
BASE COUNT          317 a          713 c          650 g          300 t
ORIGIN      
        1 gcgccgcagc agcgcctgct gatcctcgtc accatggctg acgaacaggt tgtgcacgcc
       61 gcccgagttg gccgtgctgg gcaggcccag cttgcgcccc gaataggtgc cgaggatgta
      121 ggagaccagc tcgccgccat cgacgaaggg cttggcgtag gtggccaggc cgtcgccatc
      181 gaaggtggcg ctgcccatgg cgcgcgagat gtgcgggcgc tcgtcgaggc tcagccactc
      241 cgggaacagg cgctggccga gcgcaccctc taggaaggag gagtggcggt agagattgcc
      301 gccggaaatg gcggcgagga aatggccgaa cagcccggtg gccagttccg gcgcgaacag
      361 caccggcacc tcgcaggtcg gcaccgggcg ggcgccgagg cgggccacgc tgcgctcggc
      421 ggccaggcgg ccgatccgcg ccgggtcggc cagcagctcg ccctgacggc tgacatcgta
      481 ccagtagtcg cgctgcatct gcccctcgcc ctcggcgatc atcacgcagc tcaggctgtg
      541 gcgggtgctg gcgtagccgc cgatgaagcc gtggctgttg ccgtagaccc ggcagccctg
      601 gtgggtgctc aggctggtgc cgtcagcatt gctgatgcgc gtgtcggtgg cgaaggccgc
      661 cgcctcgcag gcaagggccc gctccacggc ctgctcgggg ctgatcgccc aggggtggaa
      721 caggtccatg tccggcatgt cacgcgccat cagcgcggcg tcggccaggc cggcgcagtc
      781 gtcctcggag gcgtgcttgg cgatggccag ggccgccgcc accgtctcgc ggatggcttc
      841 gtcgccgctg gcggaggtgc tggccgagcc cttgcgctgg cccacgtaca gcgtgatgcc
      901 gaagccctgg tcgcggttga attccaccgt ctcgacctcg ccctggcgca ccgtggtgga
      961 cagcccctgc tccatcgaca ccgccacctc gcaggcgctg gcgccctgac gacgcgcctc
     1021 ggcaatgatc tgctcgacct gcgcctgcag atccggcagg gcctgcgggc ccactgcttg
     1081 tgctgaactc atgctgcact ccaacaacgg gcggccggtc cgctgcggac aggccctccc
     1141 tgactggtta tcatggcggc gtttccatcc ggaccgcccc catggctgat tcttacgacg
     1201 aagacttctc cggcgagaag agcaagaccc agatcaagcg cgagctgcac gctctgcagg
     1261 atctcggtgc ccgcctgacc acgctcaagc ccgagctgat cgccaagctg ccgctcagcg
     1321 acaacctgcg caaggccctg gccgaagccc cgaagcacac cgccaatgcc gccaagaagc
     1381 ggcatatcca gttcatcggc aagctcatgc gcgaccagga catcgaggcg atcaccgccc
     1441 tgatcgacca ggtcgacagc tccacccgcg aatacaacga gcgcttccac gccctcgagc
     1501 gttggcgcga ccgcctgatc gccggtgacg acgacaccct ggaaagcttc gtcgtcgact
     1561 accccgaaac cgaccgccag cacctgcgca gcctgatccg tcatgcccag cacgaggcgg
     1621 cgcgaaacaa accgccagcc gctgcgcgca aggtcttcaa gtacatccgc gacctggacg
     1681 aggtccagcg cggcctgcgt taacatttcc cgctccacga gcgaatcggg gcgccctctc
     1741 gtccggcgcc tcaggcgccg gtgccgccca cggtgatggc gtcgatcttc agggtcggct
     1801 gaccgacgcc caccggcaca gactggccgt ccttgccgca ggtgcccacg ccgctgtcca
     1861 gcgccaagtc gttgccgacc atggatacct tgctcatcgc ctccgggccg ttgccgatca
     1921 gcgtggcgcc cttgaccggc gcggtgatcc tgccgtcttc gatcagatag gcctcgctgg
//
LOCUS       DATIHC010000473         1820 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_26361, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000473 DATIHC010000000
VERSION     DATIHC010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1820)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1820)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1820
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26361"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1044
                     /locus_tag="VLF16_07725"
     CDS             <1..1044
                     /locus_tag="VLF16_07725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003117282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSX70809.1"
                     /translation="VYGHAPGDVLPAGTPLVDLLIPEWSAAQLEFLAVLRTGDARLIA
                     AGQERLRLLGMPRALIEQVRRSGKPRAVQTLTTPISGELQALEVRAGMTVEAGQDLAR
                     VNGLSTVWLDAAIPEAMAGTVQIGADIRATLTAFPGQPLQGRIIALLPSADPQTRTVT
                     VRSELPNPAGKLRPGMFAAVSLNSGVEQPMLLVPSEAVIRTGKRALVMLADGDGRYRP
                     QEITLGREADGRLEVLSGLEEGQAVVTSGQFLIDSEASLQGVMASSAEQDNTKGLHES
                     HGVIRALDARQVTLEHGPFESLNMPGMTMAFPLASPEVAAGLKPGDPVRIGARQTDTG
                     LLIELLSKEGGQP"
     gene            1041..>1820
                     /locus_tag="VLF16_07730"
     CDS             1041..>1820
                     /locus_tag="VLF16_07730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003452300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSX70810.1"
                     /translation="MIERLIHWSIGNRFLVLLATLFITALGIWSLRSTPLDALPDLSD
                     TQVIIRTSFPGQAPQIIENQVTYPLATTMLSVPGAKTVRGYSFFGDSFVYVLFEDGTD
                     LYWARSRVLEYLNQAQERLPEGVTTTLGPDATGVGWIYQYALVDRSGKHDLAQLRALQ
                     DWFLKYELKSLPNVAEVATLGGMVKQYQIVLDPQKLVAYGVTQQEIEAALKSANQETG
                     GAILELAEREYMVRASGYLQSLEDFRNVPLRATASGVPVLLG"
BASE COUNT          331 a          584 c          588 g          317 t
ORIGIN      
        1 gtctatggac acgctccggg cgatgtgttg cccgccggca cgcccctcgt cgacctccta
       61 attcccgagt ggtctgcagc ccagctggag ttcctggcgg tactgcgaac cggtgatgcc
      121 cgcctgatcg ccgcgggcca ggaacggctg cggctgctgg gcatgccgcg cgcactgatc
      181 gaacaggttc gacgcagcgg caaaccgcga gcggtgcaaa ccctcaccac tcctatcagc
      241 ggcgagctcc aagccttgga ggtacgcgct gggatgaccg tcgaagctgg gcaggatctg
      301 gcgcgggtca atgggctgtc cacggtctgg ctcgatgcgg cgatacccga agcaatggct
      361 ggaacggttc agattggggc cgacatccgc gccaccctga cagccttccc tgggcaaccg
      421 ctacaaggtc ggatcatcgc tttgttgccg agtgcagacc cgcaaacgcg cacggtcacc
      481 gtgcgcagcg aattgcccaa ccctgctggc aagctgcgcc ctggaatgtt tgcggccgtg
      541 agcctgaaca gtggtgtcga gcagcccatg ctgcttgtgc caagtgaggc ggtaatccgt
      601 accggcaaac gggcactggt gatgctggcc gacggtgatg ggcgctaccg cccccaggaa
      661 atcaccttgg gccgcgaagc cgatggacgc ctggaggtgc tgtctggcct tgaggaagga
      721 caggcggtcg tcacctcggg ccagttcctg attgattcgg aggccagcct acaaggcgtc
      781 atggccagca gcgcggaaca agacaatacg aaggggctgc atgagtccca tggcgtgatt
      841 cgcgccctgg atgcgcgcca ggtcaccctg gagcacgggc ccttcgagag cctgaacatg
      901 cccggcatga ccatggcgtt ccctctcgcc agccccgagg tggccgcagg cctcaagccc
      961 ggtgaccctg tgcgcatcgg tgcccggcaa acggacaccg gtctgctgat cgagctgctc
     1021 agcaaggaag gaggccagcc atgatcgagc gcctgattca ctggtcgatc ggcaaccgct
     1081 tcctggtgct gttggcgact ctgtttatca ccgcgctggg catctggtcg ctgcgcagca
     1141 cgccgctgga tgcactgccg gatctgtccg acacccaggt catcatcaga accagctttc
     1201 ccggccaggc gccgcagatc atcgagaacc aggtgaccta cccgctggcc accaccatgc
     1261 tctcggtgcc gggggcgaag acggtgcgcg gctactcgtt cttcggtgac tccttcgtct
     1321 acgtgctgtt cgaggacggt accgatctct actgggctcg ctcccgggta ctggagtacc
     1381 tcaaccaggc ccaggagcgc ctgccggagg gcgtcaccac caccctcgga ccggacgcca
     1441 ccggcgtggg ctggatctac cagtacgccc tggtcgaccg cagcggcaag catgaccttg
     1501 cccaactacg tgcgctacag gactggtttc taaagtacga gctgaagagc cttcccaacg
     1561 tcgccgaggt ggccacccta ggcggcatgg tcaagcagta ccagatcgtg ctcgaccccc
     1621 agaaactggt ggcctatggc gtgactcagc aggagattga ggcagccctg aagagtgcca
     1681 accaggagac cggcggtgcc atcctggagc tggcggagcg ggagtacatg gtgcgagcct
     1741 caggctatct gcagagtctg gaagactttc gcaatgttcc gctgcgggcc acagcaagcg
     1801 gggttccggt gctgttgggc
//
LOCUS       DATIHC010000474         5353 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_41157, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000474 DATIHC010000000
VERSION     DATIHC010000474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5353)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5353)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5353
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41157"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..439
                     /gene="ppa"
                     /locus_tag="VLF16_07735"
     CDS             <1..439
                     /gene="ppa"
                     /locus_tag="VLF16_07735"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HSX70811.1"
                     /translation="YEVDKASGAIFVDRILSTPMRYPCNYGYVPHTVCGDGDPADVLV
                     ILPLPLIPGSVIRCRPVGVLNMTDEAGGDAKLIAVPHDKLSVIYKDVQEYTDLPALLL
                     EQIKHFFENYKDLEKGKWVKVEGWGNADEARQAILKAVAAYQK"
     gene            complement(561..1856)
                     /locus_tag="VLF16_07740"
     CDS             complement(561..1856)
                     /locus_tag="VLF16_07740"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HSX70812.1"
                     /translation="MGKNVVVLGTQWGDEGKGKIVDLLTEQAAAVVRYQGGHNAGHTL
                     VIDGEKTVLHLIPSGILREGVQCLIGNGVVVAPDALMREITKLEEKGVPVRERLRISP
                     SCPLILSYHVALDQAREKARGDAKIGTTGRGIGPAYEDKVARRGLRIGDLFHRERFAS
                     KLGELLDYHNFVLVNYYKEPAIDFQATLDECMAFAELLRPMMTDVTADLHELRRADKD
                     IMFEGAQGSLLDIDHGTYPYVTSSNTTAGGTATGSGFGPLYLDYILGITKAYTTRVGS
                     GPFPTELFDETGAYLAKKGHEFGSTTGRARRCGWFDAVILRRAIEINSISGLCLTKLD
                     VLDGLETIRICTGYKDAAGNLLTDAPTDADSYIGLQPVYEEMPGWTDSTVGAKSLEEL
                     PAAARAYIKRVEELVGAPIDIISTGPDRNETIVLRHPFA"
     gene            complement(1910..3097)
                     /locus_tag="VLF16_07745"
     CDS             complement(1910..3097)
                     /locus_tag="VLF16_07745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HSX70813.1"
                     /translation="MATVDRWLLPDGIEEVLPPEAALIEAARRQVLDLFQRWGYEFVV
                     TPHIEYLESLLTGAGQDLDLRTFKVTDPLSGRQMGFRADITPQVARMDAHTLRREGPS
                     RLCYAGSVLHAKPRALATSRSPIQLGAELYGDASPASDVEVISLMLDTLALARVPDVH
                     MDLGHVGIYRGLARAAGLSGEAEQQLFDSLQRKAVDEVDALTESLQPHLASMLRALVE
                     LCGGREVLDLAQAALVEAPAEVHGALDQLVAIADQLELRYPELPLYFDLGELRGYHYH
                     TGVVFAAFVPGVGQSIAQGGRYDDVGGNFGRARPATGFSTDLKTLVTLGNMQVDTQPA
                     GVWAPDHHDLYLWQAVQRLRSEGARVVQALPGQDASAAREAGCDRQLQLCDGRWQVAP
                     LAF"
     gene            complement(3133..3318)
                     /locus_tag="VLF16_07750"
     CDS             complement(3133..3318)
                     /locus_tag="VLF16_07750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003156457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2065 family protein"
                     /protein_id="HSX70814.1"
                     /translation="MWQELGIAFCLMLVLEGVLPFLYPRRWRGTIAQLAQLPDRQLRL
                     MGLASMLLGTALLYLLH"
     gene            complement(3425..4294)
                     /gene="hflC"
                     /locus_tag="VLF16_07755"
     CDS             complement(3425..4294)
                     /gene="hflC"
                     /locus_tag="VLF16_07755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019691508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0045861 - negative regulation of
                     proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HSX70815.1"
                     /translation="MSNKSLFALIAAVVVVVLAWNSLYIVTQTEKAVLLRFGKIENPD
                     VQPGLHVKIPVVNQVRKFDGRLLTLESPIQRVLTLEKKAVMVDAYAKWRVADAQRYYT
                     ATSGIRQIADDRLSQRLIAALANQFGTRTLHEVVSGERDALMAAITKSLDSMAQKELG
                     IEVVDVRVKAIDLPKEVYRSVFDRMSSEREREAREHRAKGRELAEGIRADADRQKRVI
                     LAEAYRESEEIRGDGDAKAASIYAAAYGQDAEFYAFYRSLGAYRDSFSSKNDVLVLDP
                     KSEFFRYLQQSQP"
     gene            complement(4294..>5353)
                     /gene="hflK"
                     /locus_tag="VLF16_07760"
     CDS             complement(4294..>5353)
                     /gene="hflK"
                     /locus_tag="VLF16_07760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0045861 - negative regulation of
                     proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HSX70816.1"
                     /translation="DEAFRKLQESLNGIFGGGKKRDGQGQGGGGWGLLGIGAVLLVAI
                     WLWNAVYIVDAQEQAVILSLGKYDRTVEQGLNIYFPPIEKKFQENVTRERSFSKEGQM
                     LTEDENIVEVPLTVQYKISNLKDFVLNVDAPEVSLQHATESALRHVAGSTSMDEVITL
                     GRAQMGLEVSQRLQNFLDDYGTGITVTQVNIQRATAPAEVKDAFDDVIRAREDEQREK
                     NQAETYANGVVPEARGQAQRIIEDANGYRDEVVARAEGEADRFSKLVAEYRKAPEVTR
                     QRLYLDTMEQVFSNTSKVLVTGEEGQNNLLYLPLDKMIDSRAGSGAAPSAPSASGEAG
                     SRVINNVERGDLRSRESR"
BASE COUNT          910 a         1735 c         1751 g          957 t
ORIGIN      
        1 gtacgaggtc gacaaggcct cgggcgcgat cttcgtcgac cgcatcctgt ccacgccgat
       61 gcgctacccg tgcaactacg gctacgtgcc gcacaccgtc tgcggcgacg gcgacccggc
      121 cgacgtgctg gtcatcctgc cgctgccgct gatccccggc tcggtgatcc gctgccgccc
      181 ggtcggcgtg ctgaacatga ccgacgaagc cggcggcgac gccaagctga tcgccgtccc
      241 gcacgacaag ctgtccgtga tctacaagga cgtccaggaa tacaccgacc tgccggccct
      301 gctgctggag cagatcaagc acttcttcga gaactataag gatctcgaga agggcaagtg
      361 ggtcaaggtc gaaggctggg gcaacgctga cgaagcccgc caagcaattc tgaaggcggt
      421 agcggcttac caaaaataag ccagtaccac cccctgaagg ccggccacaa gccggccttt
      481 ttattgcctg cgattcaccc tgttggagcc tcgccaacaa aaaaggccgc tcgaaagcgg
      541 cctttttcgt tctagcggga tcaggcgaac gggtgacgca ggacgatggt ctcgttgcgg
      601 tccgggccgg tggagatgat gtcgatcggc gcaccgacca gctcttccac gcgcttgatg
      661 taggcacgcg cggccgccgg cagctcttcc aggctcttgg cgccgacggt ggagtcggtc
      721 cagcccggca tctcttcgta caccggctgc aggccgatgt agctgtcggc gtcggtcggc
      781 gcgtcggtca gcaggttgcc ggcggcatcc ttgtaaccgg tgcagatgcg gatggtttcc
      841 aggccgtcga gcacgtccag cttggtcagg cacaggccgg agatgctgtt gatctcgatg
      901 gcacgacgca ggatcacggc gtcgaaccag ccgcaacgac gggcacgacc ggtggtggag
      961 ccgaactcgt ggcccttctt ggccaggtag gcgccggtct cgtcgaacag ctcggtgggg
     1021 aacgggccgg agccgacgcg ggtggtgtag gccttggtga taccgaggat gtagtccagg
     1081 tacagcgggc cgaaaccgga accggtggcg gtaccgccgg cggtggtgtt ggagctggtg
     1141 acgtacgggt aggtgccgtg gtcgatgtcc agcagcgagc cctgggcgcc ttcgaacatg
     1201 atgtccttgt cggcgcggcg cagctcgtgc aggtcggcgg tgacgtcggt catcatcggg
     1261 cgcagcagct cggcgaacgc catgcactcg tccagggtgg cctggaagtc gatggccggc
     1321 tctttgtagt aattgaccag cacgaagttg tggtagtcca gcagctcgcc cagcttggag
     1381 gcgaaacgct cgcggtggaa caggtcaccg atgcgcaggc cgcgacgggc caccttgtct
     1441 tcgtaggccg ggccgatgcc gcgaccggtg gtgccgatct tggcgtcgcc acgggccttc
     1501 tcgcgggcct ggtcgagggc cacgtggtag gacaggatca gcgggcagga cgggctgatg
     1561 cgcaggcgct cgcgcaccgg tacgcccttc tcttccagtt tggtgatctc gcgcatcagg
     1621 gcgtcggggg cgactaccac gccgttgccg atcaggcact gcacgccttc gcgcaggatg
     1681 ccggacggga tcaggtgcag cacagtcttc tcgccgtcga tgaccagggt gtggccggcg
     1741 ttgtggcctc cctgatagcg cactaccgcg gcggcctgct cggtcagcag gtcgacgatc
     1801 ttgcccttgc cctcatcacc ccactgggtg cccaggacca cgacattctt acccataaca
     1861 cttgtcctct ttggaagctc gatgccggcc gcggccggcg gaaaactcgt cagaacgcca
     1921 gcggcgccac ttgccaacgt ccatcgcaca gctgcagctg gcggtcgcaa cccgcctcgc
     1981 gcgccgcgct cgcatcctgt ccgggcagcg cctggaccac gcgagccccc tcgctgcgca
     2041 ggcgctgtac ggcctgccac aggtacagat catgatgatc cggcgcccag acgcccgcgg
     2101 gctgcgtgtc gacctgcatg ttaccgaggg tcaccagggt cttcaggtcg gtggagaaac
     2161 cggtggccgg acgcgcacgg ccgaagttgc cgccgacatc atcatagcgg ccaccctggg
     2221 cgatggactg gccgacgccc ggcacgaacg cggcgaacac cacgccggtg tgatagtgat
     2281 agccgcgcag ctcgccgagg tcgaaatata gcggcagctc gggatagcgc agctccagct
     2341 ggtcggcgat ggccaccagt tgatccagcg cgccatgtac ttcggccggc gcctcgacca
     2401 gggccgcctg ggccaggtcc agcacttcgc ggccgccaca cagctcgacc agtgcgcgca
     2461 gcatgctggc caggtgcggt tgcagggatt cggtgagcgc gtcgacctcg tcgacagcct
     2521 tgcgctgcag ggagtcgaac agctgctgct cggcctcgcc ggacaagccg gcggcgcggg
     2581 ctaggccgcg atagatgccg acatgaccga ggtccatgtg cacatccggc acgcgggcta
     2641 gagccagggt gtcgagcatc aggctgatga cttccacgtc gctggccggg ctggcgtcgc
     2701 cgtacagctc ggcgccgagc tggatcggac tgcgcgaggt agccagggca cgcggcttgg
     2761 catgcagcac gctaccggcg tagcacaggc ggctcgggcc ttcgcggcgc agggtgtgcg
     2821 catccatccg cgccacctgc ggcgtgatgt cggcgcggaa gcccatctgc cgaccggaaa
     2881 gcgggtcggt caccttgaag gtgcgcagat ccaggtcctg gccggcaccg gtgagcaggg
     2941 attccaaata ttcgatgtgc ggggtgacga cgaactcgta gccccaacgc tgaaatagat
     3001 ccagcacctg gcggcgcgcc gcctcgatca gtgccgcttc cggcggcagt acttcttcga
     3061 tgccatctgg caggagccag cggtctaccg ttgccatttc gccattcccc tctcggtacg
     3121 ggcggcaagc catcagtgaa gcagatacag gagggcggtc cccagcaaca tgctagcaag
     3181 ccccatgagg cgcaactgac ggtcaggcag ctgtgccagt tgcgcgatcg ttccgcgcca
     3241 gcgtcgtgga tagaggaaag gcaggacgcc ttccagcacc aacatcagac aaaacgcgat
     3301 gccgagttcc tgccacatga ttcccagacg caaaaaagcc gggtttttcc cggctgaccc
     3361 atgataacac gttttcccgt gcggtcaccc cgacacggcc gaacggccgg tcggggcgat
     3421 ggcatcacgg ctgggattgc tgcagatagc ggaagaactc gctcttcgga tccagcacca
     3481 gcacgtcgtt cttgctggag aagctgtcgc ggtaggcacc caggctgcga tagaacgcgt
     3541 agaactcggc gtcctggcca taggcggcag cgtagatcga agcggccttg gcatcgccgt
     3601 caccgcggat ctcttcggac tcgcgatagg cttcagcgag gatcacacgc ttctgccggt
     3661 ctgcgtccgc gcgaatgcct tcggccagct cgcggccctt ggcacggtgc tcgcgggcct
     3721 cgcgctcgcg ctccgagctc atacggtcga acacgctgcg atagacctct tttggcaggt
     3781 cgatggcctt gacgcgaaca tccaccacct cgatgccgag ctccttctgc gccatgctgt
     3841 cgagcgactt ggtgatcgcc gccatcagcg catcacgctc accggaaacc acctcatgca
     3901 gcgtgcgggt accgaactgg ttggccagag cggcgatcag gcgctgggaa agacgatcat
     3961 cggcgatctg gcgaatgccg gaggtcgcgg tgtaataacg ctgggcatcg gcgacgcgcc
     4021 acttggcgta ggcgtcgacc atgacggcct tcttctccaa ggtcagcacg cgctggatcg
     4081 gcgactccag ggtcagcagg cggccgtcga acttgcgcac ctggttcacc accgggatct
     4141 tcacgtgaag cccgggttgc acgtccgggt tctcgatctt accgaagcgc agaagcaccg
     4201 ccttctcggt ctgggtgacg atgtacaggc tgttccatgc cagcaccacg accaccacag
     4261 cggcgatcag ggcaaacagc gacttgttgc tcatcagcgg ctctccctag agcgcaggtc
     4321 gccccgctcg acattattga ttacccggct gccggcttcg ccactggcgc tcggcgcgct
     4381 gggcgcggcg ccactgccgg cgcgactgtc gatcatcttg tccagcggca gatagagcag
     4441 gttgttctgg ccttcctcgc cggtcaccag caccttgctg gtgttgctga agacctgctc
     4501 catggtgtcc aggtacagac gctggcgagt gacttccggc gccttgcggt actcggccac
     4561 cagcttgctg aagcgatccg cctcaccctc ggcacgtgca acgacttcgt cgcggtaacc
     4621 gttggcatcc tcgatgatgc gctgggcctg accgcgggcc tcgggcacca cgccgttggc
     4681 gtaggtctcg gcctggttct tctcacgctg ctcgtcctcg cgggcacgga tcacgtcgtc
     4741 gaaggcgtcc ttgacctcgg ctggagccgt ggcgcgctgg atgttgacct gggtgacggt
     4801 gatgccggtg ccatagtcgt cgaggaagtt ctgcagacgc tggctgactt cgaggcccat
     4861 ctgtgcgcga cccagggtga tcacctcgtc catcgaggta gaaccggcga cgtggcgcag
     4921 cgcactctcg gtggcgtgct gcaggctcac ttccggggca tcgacgttga gcacgaagtc
     4981 cttgaggttg ctgatcttgt attgaacggt cagcggcacc tcgacgatgt tctcgtcctc
     5041 ggtgagcatc tgcccttcct tggagaagga acgctcgcgg gtgacgttct cctggaattt
     5101 cttctcgatc ggcgggaagt agatgttcag gccctgctcg acggtgcggt cgtacttgcc
     5161 gaggctcagg atcaccgcct gctcctgggc gtcgacgatg tacacggcgt tccacagcca
     5221 gatcgcgacc agcagcactg cgccgatgcc gagcaggccc cagccaccac caccctggcc
     5281 ttggccatca cgtttcttgc cgccgccgaa gatgccgttc aggctctcct gcagcttgcg
     5341 gaaggcttcg tcg
//
LOCUS       DATIHC010000475         3218 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36455, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000475 DATIHC010000000
VERSION     DATIHC010000475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3218
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36455"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..148
                     /locus_tag="VLF16_07765"
     CDS             <1..148
                     /locus_tag="VLF16_07765"
                     /EC_number="4.1.3.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012020163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008813 - chorismate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HSX70817.1"
                     /translation="CRYPAAWLPPQVRAEQLWGRRSCFRRDGLGVLVAEVFLPAFWDH
                     AAEN"
     gene            208..1101
                     /gene="ubiA"
                     /locus_tag="VLF16_07770"
     CDS             208..1101
                     /gene="ubiA"
                     /locus_tag="VLF16_07770"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015886571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008412 - 4-hydroxybenzoate
                     octaprenyltransferase activity [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HSX70818.1"
                     /translation="MYQSFLLALNRLHPRTWDFVQLMRLEKPIGIYLLLWPTLWALWV
                     ASKGLPDLGLLLIFVFGTLFMRAAGCVINDYADRHIDGHVTRTRARPLADGRVTEREA
                     LVLFAVLVGMSFVLVLFTNLTTILLSFGGLALAACYPFMKRYTYYPQVVLGAAFSWGM
                     PMAFSAVTGELPPPEAWLLYIANLLWTVAYDTYYAMTDREDDLKIGVKSTAILFGEAD
                     RSIILALQGLALLCLAMAGARFSLGIWFLLGLLGAAACFAWEFWYTRDRDPQKCFAAF
                     LHNHWAGLAILLGIVVDFALR"
     gene            1188..1877
                     /gene="phoB"
                     /locus_tag="VLF16_07775"
     CDS             1188..1877
                     /gene="phoB"
                     /locus_tag="VLF16_07775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003096653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon transcriptional regulator
                     PhoB"
                     /protein_id="HSX70819.1"
                     /translation="MVGKNILIVDDEAPIREMIAVALEMAGYDCLEAENTQQAHALIV
                     DRKPDLILLDWMLPGTSGIELARRLKRDELTDDIPIIMLTAKGEEDNKIQGLEVGADD
                     YITKPFSPRELVARLKAVLRRTAPSDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTE
                     YRLLQFFMTHQERAYTRGQLLDQVWGGNVYVEERTVDVHIRRLRKALGEAYENLVQTV
                     RGTGYRFSTKS"
     gene            1905..3209
                     /gene="phoR"
                     /locus_tag="VLF16_07780"
     CDS             1905..3209
                     /gene="phoR"
                     /locus_tag="VLF16_07780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012077959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon sensor histidine kinase PhoR"
                     /protein_id="HSX70820.1"
                     /translation="MNQDWRGALARRLLLLLVGCGLAGLITGEYGWALAIGLGGYLLW
                     HLKQLLRLHAWLRERRPEDAPPEGYGLWGEVFDNIYHLQRRDQRVRGRLQAVIDRVQE
                     STAALRDAVIMLDAEGNLEWWNRAAEELLGLKTPQDSGQSITNLVRHPQFKEYFDAGQ
                     YQEALELPSPVNDRQRLQFQITQYGNREHLMLVRDVTRLHQLEQMRKDFVANVSHELR
                     TPLTVIAGYLETLLDNVEDVNPRWLRALQQMQQQGSRMQNLLNDLLLLAKLEATDYPS
                     DNHPVAVDLLLLSIRNDAQALSSGRNHRITLEADHQVRLKGSEAELRSAFSNLVFNAV
                     KYTPDDGEIRIRWWADEQGGHFSVADSGIGIEAKHLPRLTERFYRVDSSRASNTGGTG
                     LGLAIVKHVLLRHRARLDIVSVLGKGSTFTCHFPPQQLSRRD"
BASE COUNT          534 a         1146 c         1016 g          522 t
ORIGIN      
        1 ctgccgctac ccggccgcct ggctaccgcc gcaggtgcgc gccgagcagc tctgggggcg
       61 tcgctcgtgc ttccgccgcg acggtcttgg cgtactggtg gctgaggtgt tcctgccggc
      121 attctgggat cacgcggccg agaactagcg ccgcctgcat ttcacgcatg ctcttataat
      181 cggcgcaccc ggaccggaga cccgccgatg taccaatcct ttctgctcgc cctcaatcgc
      241 ctgcacccgc gcacctggga cttcgtccag ctgatgcgcc tggagaagcc catcggcatc
      301 tacctgctgc tgtggccgac gctgtgggcg ctgtgggtgg ccagcaaggg cctgccggat
      361 ctcggcctgc tgctgatctt cgtcttcggt accctgttca tgcgcgccgc cggctgcgtg
      421 atcaacgact acgccgatcg ccacatcgac ggccacgtga cacgcacccg cgcgcggccg
      481 ctggccgatg gccgggtgac cgagcgcgag gcgctggtgc tgttcgccgt gctggtgggg
      541 atgagcttcg tgctggtgct gttcaccaac ctgaccacca tcctgctgtc gttcggcggc
      601 ctggccctgg ccgcctgcta ccccttcatg aagcgctaca cctattaccc gcaggtggta
      661 ttgggcgcgg ccttctcctg gggcatgccg atggccttca gcgcggtgac cggcgagctg
      721 ccgccgcccg aggcctggct gctgtacatc gccaacctgc tgtggacggt ggcctacgac
      781 acctactacg cgatgaccga ccgcgaggac gacctgaaga tcggcgtgaa gtccaccgcc
      841 atcctgttcg gcgaggccga ccgcagcatc atcctcgcgc tgcagggcct cgccctgctg
      901 tgcctggcca tggccggcgc gcgcttcagc ctgggcatct ggttcctgct cggcctgctc
      961 ggcgccgccg cctgcttcgc ctgggaattc tggtacaccc gcgaccgcga cccgcagaaa
     1021 tgcttcgccg ccttcctgca caaccactgg gccgggctgg cgatcctgct cggcatcgtt
     1081 gtcgacttcg cgctgcgtta gaaaggtggc tgccgcaggg ctgtcacatc gctgcaataa
     1141 ttccgttatc taatgcggcg cagacagaac gacccgaggc tcgacccatg gttggcaaga
     1201 acatcctgat cgttgacgac gaagctccca tccgcgagat gatcgcagtg gccctggaga
     1261 tggccggcta cgattgcctg gaggcggaaa acacccagca ggcccacgcc ctgatcgtcg
     1321 accgcaagcc ggacctgatc ctgctcgact ggatgctgcc gggcactagc ggcatcgaac
     1381 tggcgcgccg cctcaagcgc gacgagctga ctgacgacat cccgatcatc atgctcaccg
     1441 ccaagggcga agaggacaac aagatccagg gcctggaagt cggcgccgac gactacatca
     1501 ccaagccctt ctcgccgcgc gagctggtgg cacgcctcaa ggccgtgctg cgccgcaccg
     1561 caccgagcga cggcgaggcg ccgatcgagg tcggcggcct gctgctcgac ccgatcagcc
     1621 accgcgtgac catcgacggc aagccggccg agatgggccc caccgaatac cgcctgctgc
     1681 agttcttcat gacccaccag gagcgtgcct atacccgcgg ccagctgctc gatcaggtct
     1741 ggggcggcaa cgtgtatgtc gaggagcgca ccgtggacgt gcacatccgc cgcctgcgca
     1801 aggccctcgg cgaagcctac gagaacctgg tgcagacggt gcgcggcacc gggtatcgtt
     1861 tctccaccaa gagctgatcc ctgttcagac taaggaagcg ctaggtgaac caagattggc
     1921 gcggcgccct ggcgcgccgc ctgctgttgc tgctggtggg ctgcggcctg gccggcctga
     1981 tcaccggcga atacggctgg gccctggcca tcggcctcgg cggctacctg ctgtggcacc
     2041 tcaagcagct gctgcgcctg cacgcctggc tgcgcgagcg caggcccgag gacgcaccgc
     2101 ccgaaggcta tggcctgtgg ggcgaagtgt tcgacaacat ctatcacctg cagcgccgcg
     2161 accagcgcgt gcgcggccgc ctgcaggcgg tgatcgaccg ggtccaggag tccaccgccg
     2221 ccctgcgcga cgcggtgatc atgctcgacg ccgagggcaa cctggagtgg tggaaccgcg
     2281 ccgccgagga gctgctgggc ctgaaaaccc cgcaggacag tggccagtcg atcaccaacc
     2341 ttgtccgtca tccgcagttc aaggaatact tcgacgccgg ccagtaccag gaggcgctgg
     2401 agctgccgtc gccggtcaat gatcgccagc gcctgcaatt ccagatcacc cagtacggca
     2461 atcgcgaaca cctgatgctg gtgcgcgacg tcacccgcct ccaccagctg gagcagatgc
     2521 gcaaggactt cgtcgccaac gtctcccacg aactgcgcac gccgctgacg gtgatcgccg
     2581 gttatctcga gaccctgctg gacaacgtcg aagacgtgaa cccgcgctgg ctgcgcgccc
     2641 tgcagcagat gcagcagcag ggctcgcgca tgcagaacct gctcaacgac ctgctgctgc
     2701 tggccaagct ggaagccacc gactatccct ccgacaacca cccggtggcc gtcgacctgc
     2761 tgttgctgtc gatccgcaac gacgcccagg ccctgtcctc ggggcgcaat caccgcatca
     2821 cactggaggc ggaccaccag gtgcgcctca agggcagcga ggcggagctg cgcagcgcct
     2881 tctccaacct ggtgttcaac gcggtgaagt acaccccgga cgacggcgag atccgcatcc
     2941 gctggtgggc cgacgaacag ggcgggcact tcagcgtggc cgacagcggc atcggcatcg
     3001 aggccaagca cctgccgcgc ctgaccgagc gcttctaccg ggtcgactcc agccgcgcct
     3061 ccaacaccgg cggcaccggc ctgggcctgg ccatcgtcaa gcacgtgctg ctgcgccacc
     3121 gggcacggct ggacatcgtc agcgtgctcg gcaagggcag caccttcacc tgccacttcc
     3181 cgccgcagca gctgagccgc cgcgactgat cggccggc
//
LOCUS       DATIHC010000476         4767 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_23977, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000476 DATIHC010000000
VERSION     DATIHC010000476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4767)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4767)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4767
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23977"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..122)
                     /locus_tag="VLF16_07785"
     CDS             complement(<1..122)
                     /locus_tag="VLF16_07785"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014338583.1"
                     /note="catalyzes the reduction of N-acetyl-5-glutamyl
                     phosphate to N-acetyl-L-glutamate 5-semialdehyde in
                     arginine biosynthesis; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HSX70821.1"
                     /translation="MASPLIFIDGDQGTTGLQIHQRLRDRTDLRLITLSPEHRK"
     gene            237..1121
                     /locus_tag="VLF16_07790"
     CDS             237..1121
                     /locus_tag="VLF16_07790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007936959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX70822.1"
                     /translation="MREISLDRLRTLVAIADLGSFAEAARVLHLAPPTVSLHIADLES
                     RVGGKLLSRTRGRIQPSAIGETLVERARRLLADAEQALEDVERQVQGLAGRVRLGAST
                     GAIAQLMPQALETLGQRHPAIDVQVAVLTSQETLKKLAEGSLEIGLVALPQTPVKELR
                     IEPWRRDPVMAFLPARWECPDVVTPGWLAAQPLILNDKTTRLSRLTSEWFASDGRQPT
                     PRIQLNYNDAIKSLVAAGYGATLLPHEASTPLPDTRIVMRPLQPLLWRQLGIAHRGGD
                     VERPTQHVLDVLWGLSAG"
     gene            complement(1305..1517)
                     /locus_tag="VLF16_07795"
     CDS             complement(1305..1517)
                     /locus_tag="VLF16_07795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003830781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70823.1"
                     /translation="MDYHLGTGKTPLTRVVEAWREHWPQAFPLPHPSPRNNRWLVRNP
                     WFQQDVLPALQARVQAVLTANPKETP"
     gene            complement(1420..1950)
                     /locus_tag="VLF16_07800"
     CDS             complement(1420..1950)
                     /locus_tag="VLF16_07800"
                     /inference="COORDINATES: protein motif:HMM:NF015146.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HSX70824.1"
                     /translation="MAPPSCASHPFRKRAMPTLDAFLTDVRACTRCAPHLPHGVQPVF
                     QFHPSAPILIAGQAPGARVHASGVPFDDASGARLRAWLGVDRDTFYDPTRIAILPMGF
                     CYPGTGKSGDLPLRPECAPRLARSLHAALRAPVADHRAGQLRHGLPPRYWQDAAHPGG
                     RSLARALAASVPPASP"
     gene            complement(1979..2527)
                     /locus_tag="VLF16_07805"
     CDS             complement(1979..2527)
                     /locus_tag="VLF16_07805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003465000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P460 family protein"
                     /protein_id="HSX70825.1"
                     /translation="MKIALTGALLASALVLPLAVTAGDFSPYVDSQGGISRPTDFRTN
                     FVHLGSYAVLDEKSASRGLHDVYTEKASAEHYRKTGKFLDGATLVKEIRKLETSAMTT
                     GNPVVWGSDAAVWFVMVKDAKGRFASNPLWGDGWGWALFKADAPAKNVAVSYEADCMG
                     CHVPAAKTDRVFIQGYPTLTQH"
     gene            complement(2555..3088)
                     /locus_tag="VLF16_07810"
     CDS             complement(2555..3088)
                     /locus_tag="VLF16_07810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013521184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HSX70826.1"
                     /translation="MTQIAPLTIDTADAATAATLKAVKAKLGMVPNLFATLAHAPAAL
                     NGYLGLSETLGTGRLNASQREIVALAAAQANRCQYCLSAHTLIGKGAGLSAEAIAAAR
                     TGQAANALDDAIAGFARALVEQRGVVSADAMANYRRAGLDDGLILEVIANVALNTLTN
                     YTNHIADPTVDFPVVAV"
     gene            3206..4048
                     /locus_tag="VLF16_07815"
     CDS             3206..4048
                     /locus_tag="VLF16_07815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003830784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSX70827.1"
                     /translation="MADRLAGLLRHYSLSARVFHSGAFCGQHHYAAPHGYIHLVRRGP
                     ITARSPVHEDLLVTEPSLLFYPRVASHRFVAAPGDTAELLCAEVDLGASTGNPLAMAL
                     PSMLLIPLADLPGLGPTLELLFAEAERDQCGRQAAIDRLCELLLIQLLRYLMDGRLGA
                     TGLLAGLADPKLARAITAMHDAPQTAWSLEALAAKAGMSRARFAAAFKDAVGVTPGDY
                     LADWRMNVSCTLLKQGRPVAVVADRVGYGSPNALARAFRVRMGCAPRDWLAQQRGDAA
                     LSGS"
     gene            complement(4297..>4767)
                     /locus_tag="VLF16_07820"
     CDS             complement(4297..>4767)
                     /locus_tag="VLF16_07820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011347534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA (cytosine-5-)-methyltransferase"
                     /protein_id="HSX70828.1"
                     /translation="VASGPEGEWHPSALVEAYGKLSKRAQSSWEWWRLPAPPARTSIF
                     ADLVEDKPHGVTWHTAAETKKLLGMMNPLNLAKVEAAKKAGGRQVGTIYKRTRADGPN
                     GEKVQRAEIRFDDVAGCLRTCRFQKTAALNVRSRLHYSSGGVGSIRQRRAAAGQ"
BASE COUNT          762 a         1383 c         1674 g          948 t
ORIGIN      
        1 tccttgcgat gttcggggct gagcgtgata agccgcagat cggtccggtc gcgtagacgt
       61 tgatggattt gcaacccggt ggtgccttgg tcgccgtcga tgaatataag aggacttgcc
      121 atggaatgct ctcggacata ggaaatcagg agttccaatc ttcagtgagg ggctaagata
      181 ggaaaagttg aatttctaaa cgatgaaatt cagcttttct gaacaaggag tgactcatgc
      241 gcgaaatcag cctggaccgt ctgcgcacgt tggtggccat tgccgacctg ggttcgtttg
      301 ccgaggcggc ccgtgtgctg cacctcgcgc cacccacggt cagtttgcat attgccgacc
      361 tggagtcgcg ggttggcgga aagctgttgt cgcgcacacg tgggcgcatt cagccttcgg
      421 cgattggaga aacgctggtg gagcgcgcgc ggcgcctgtt ggcggatgcg gagcaggcgc
      481 ttgaggacgt ggagcgtcag gtgcagggct tggccgggcg tgtgcggctg ggtgcctcca
      541 caggggccat cgcacagttg atgccgcaag ctttggagac gttgggccaa cgccatcccg
      601 ctatcgatgt gcaggtcgcg gtgctcacgt cgcaggaaac tttgaagaaa cttgccgagg
      661 gctctttgga gatcggtctg gtcgcgctgc cacagacccc ggtgaaggaa ttgcggatcg
      721 agccatggcg gcgggacccg gtcatggcct tcttgccggc tcgctgggaa tgcccggatg
      781 ttgtgacccc cggttggctg gccgcccagc cattaattct gaatgacaaa actactcggc
      841 tttcgcgctt gacctcggag tggttcgcca gtgatggacg gcagcccacg ccgcgtattc
      901 aactgaacta caacgatgcg atcaaaagcc tagtggcggc cggttatggt gcgacgttgt
      961 tgccgcatga agcctccacg ccattgcccg ataccaggat cgtcatgcgg ccattacagc
     1021 ccttattgtg gcgtcaactt ggtattgccc accgtggtgg ggacgtcgag cggcctacgc
     1081 aacatgtgct ggatgtgttg tgggggttga gtgcgggcta gggcgatgtt gtcagagaaa
     1141 ggaccgcttt cgacccggtc atacggtgat tgaggtccca ggcgtcagct accgcacctg
     1201 aagccgtcgt tcatcgctcc aaagccggag cctgtctccg ttcgcccagg ccagggcatc
     1261 gtagtacttg tgcagcagct cggtaatggc ggcggtgtcg tcggtcatgg ggtttccttg
     1321 gggttggcgg tgaggactgc ctggacgcgt gcttgcagcg cgggcagcac gtcttgttgg
     1381 aaccaggggt tgcgcaccag ccagcgattg ttgcgcgggc tagggtgagg cagggggaac
     1441 gcttgcggcc agtgctcgcg ccaggcttcg accacccggg tgagcggcgt cttgccagta
     1501 ccgaggtggt agtccatggc gtagctgccc agcacgatga tcagcgacag gcgctcgaag
     1561 cgctgcatga aggcttcgcg ccaggcgggg ggcgcactcc gggcgtagcg gcaggtcacc
     1621 gcttttgccg gtgcccggat aacagaagcc catgggcaga atggcgatgc gggtagggtc
     1681 gtagaaggtg tcgcggtcca cgcccagcca ggcgcgcaga cgcgcgccgc tggcgtcgtc
     1741 gaagggcacg cctgaggcat ggacccgggc ccccggtgct tggccggcga tgaggatggg
     1801 cgcactcggg tgaaactgga agaccggctg cacgccgtgt ggcagatgcg gtgcgcagcg
     1861 cgtgcaggcg cggacgtcgg tcagaaaggc gtcgagtgtc ggcatggcgc gcttccggaa
     1921 agggtggctc gcgcaggacg gaggtgccat cctgcgcgaa gcgtaacccg gcagcaagtc
     1981 agtgctgggt cagtgtcgga tagccctgga tgaatacgcg gtcggtcttg gccgccggca
     2041 catggcagcc catgcagtcg gcttcgtagc tgacggcgac attcttggcg ggggcgtcgg
     2101 ccttgaacag cgcccagccc cagccgtcgc cccacaaggg gttgctggcg aaacggcctt
     2161 tggcgtcctt gaccatcacg aaccacacgg ccgcatcgga accccagacc acagggttgc
     2221 cagtggtcat ggcgctggtt tcgagcttgc ggatctcttt caccagcgtg gcgccgtcca
     2281 agaacttgcc ggtcttgcgg tagtgctcgg ccgaggcctt ttcggtgtac acatcgtgca
     2341 ggccgcgaga ggcggatttt tcgtccaaca ccgcatatga gcccaggtgg acgaagtttg
     2401 tgcggaagtc tgtggggcgg ctgatgccgc cctggctgtc cacatagggc gaaaagtcgc
     2461 cggccgtgac ggccagtggc aggacgaggg cgctggcgag cagagcgccg gtgagtgcga
     2521 ttttcatcgt gttctcctta tatgcctatg gagatcagac ggcgaccacg gggaaatcca
     2581 ccgtggggtc ggcgatgtgg ttggtgtagt tggtgagcgt gttcagcgcg acgttggcga
     2641 tcacttccag tatcaggccg tcgtcgagcc ccgcgcggcg gtagttggcc atggcgtcgg
     2701 ccgacaccac gccgcgttgc tcgaccagcg cgcgggcaaa gccggcaatt gcatcgtcaa
     2761 gtgcgttggc cgcctggccg gtgcgggccg cggcgatggc ctctgccgac agtccggcac
     2821 ctttgccgat cagggtgtgt gcgctcaggc aatactggca gcgattggct tgagcggcag
     2881 cgagcgcaac gatctcgcgc tgggaggcat tcaggcggcc ggtgcccagc gtttcggaca
     2941 agccgaggta gccattgagc gccgccggcg cgtgggccag cgtggcgaac aggttcggca
     3001 ccatgccaag cttggctttg acggccttga gtgtggcagc ggtagcggcg tcagcggtgt
     3061 cgatggtcag gggggcgatt tgggtcatgt ctatctccgt agtgggtgag gtgcaagagc
     3121 acgtgggcat gatcgccctt tgtttggtac gatatggcac gtaaagtatc aaatacgtaa
     3181 cctatcgtct tatatggaga gtggaatggc ggatcgactg gccggcttgc tccggcacta
     3241 ctcgctttcg gcgcgcgttt ttcacagcgg cgccttctgt gggcagcatc attacgcggc
     3301 gccgcatggc tatatccatc tggtgcggcg cggcccgatt acggcgcgtt cgcccgtgca
     3361 tgaagatctg ctggttaccg agccgagcct gctgttttat ccgcgcgtgg cgtcgcatcg
     3421 ttttgtcgcc gcccccggcg ataccgctga gctgttgtgt gcggaggtcg acctgggcgc
     3481 ttcgacgggc aatccgttgg ccatggcctt gccgtcgatg ctgctgattc cgttggcgga
     3541 cttgcccggc ctcgggccga cgctagagtt gctgtttgcc gaagccgagc gcgaccagtg
     3601 cggtcggcag gccgccatcg accgcttgtg cgagttgcta ctgatccagt tgctgcgtta
     3661 tctgatggat gggcggcttg gcgccaccgg actgctggcg ggcctggccg acccgaaact
     3721 cgcgcgcgcc ataaccgcca tgcacgatgc gccgcagacc gcgtggtcgc tcgaggcgct
     3781 ggcggcgaag gcgggcatgt cacgcgcgcg cttcgccgcc gcgttcaagg acgcggtggg
     3841 cgtcacgccg ggcgactatc tggccgactg gcggatgaac gtcagttgca ccctgctcaa
     3901 gcaggggcgg ccggtggcgg tggtggccga ccgcgtcggc tacggcagcc cgaacgctct
     3961 ggcgcgcgcc ttccgcgtgc gcatgggctg cgccccgcgc gactggctgg cgcagcagcg
     4021 cggtgacgcg gcgctcagcg gttcgtgagt ttgagttcga ttcgccggtt cttggcgtag
     4081 gcggcgccgg tgttgcgctc gtcgagcggg tgaaattcgc atcacgccgg aacaactggc
     4141 ggaactccag gtggcgatcc gtcaacggct ggtcagtctg ttcgtgcggc gcggccggct
     4201 ggacaaggct gagtcagtgg cgcaggtagc tggatgacgc tgtcccgccc tgagccgacg
     4261 ctcacaggcg gggatttcca gtgtcgtcat tgtcggctat tggccggcag cagcccgtcg
     4321 ttgcctgatg gatccaaccc ctccgctgct atagtgcagt cggcttctga cgttcagtgc
     4381 agccgtcttc tgaaaacgac acgtgcgcag gcaaccggcc acgtcatcga aacggatttc
     4441 ggcgcgttgc accttctcgc cgttcgggcc atcggcgcgg gtgcgcttgt agatcgtgcc
     4501 gacctggcgg ccaccggctt tcttggcggc ttcaactttc gccaggttta gcgggttcat
     4561 catgccgagc agcttctttg tttcggcggc cgtgtgccag gtgacgccgt gcggcttatc
     4621 ttccaccagg tcggcaaaga tcgacgtgcg ggccggaggc gccggcaggc gccaccattc
     4681 ccaagagctt tgcgcacgct tcgagagctt gccgtaagcc tcgaccagcg cggacggatg
     4741 ccattcccct tccgggccgc tggcgac
//
LOCUS       DATIHC010000477         1674 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31660, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000477 DATIHC010000000
VERSION     DATIHC010000477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1674
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31660"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..141
                     /locus_tag="VLF16_07825"
     CDS             <1..141
                     /locus_tag="VLF16_07825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007906826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSX70829.1"
                     /translation="AFLGACLPAWVAAIALFSGLNAVALMLMALSSVVLLSLYRIPRQ
                     LG"
     gene            141..944
                     /locus_tag="VLF16_07830"
     CDS             141..944
                     /locus_tag="VLF16_07830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017521837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin-binding protein"
                     /protein_id="HSX70830.1"
                     /translation="MRTFLAACLLACAMPLAAAERVVSLAPSMSEIMLELGATERLVG
                     VLDGGPRPAGLAHLPSVGRYGQVELETLLALQPDLLLLWPASVPEAQRRQLESFGIPL
                     YVGEPHDFAQLAEQFAEIGRRVGFAARGQALRERFETRLAELRQRYRREPRLPVFYQV
                     WHAPLYTLGGRQIVSDALRVCGARNVFADLRLPAPQVNVEAVLARAPAAIIGGSDAEL
                     QPWRAWPQLPAVRLNQLWPVPDKGLERPSFQMLMATEKLCERLAGARLN"
     gene            complement(998..>1674)
                     /locus_tag="VLF16_07835"
     CDS             complement(998..>1674)
                     /locus_tag="VLF16_07835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008059512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSX70831.1"
                     /translation="LPLNAANDLILSYSEGFRAPTFNDLYYPGYSNPSLKPEHSKSYE
                     LQWRSQLAETTRLEASLYRTDIEDAIASDQAFIPQNIAEARIHGFEASVQQELFGWQG
                     QLGVAFVDPRDRDNGHTLNRRARRTLSLDLDRRFGDFAVGASWQAASSSYDDPDNQQE
                     MGGYGLLGLRGSWQATSELKLEAKVDNLLDKEYQRALYEHEGVSYGYRQEGRSAMLGF
                     VWTPKL"
BASE COUNT          211 a          571 c          599 g          293 t
ORIGIN      
        1 gccttcctcg gcgcctgctt gccggcctgg gtcgccgcca tcgccctgtt cagcgggctc
       61 aatgccgtcg ccctgatgct catggcgctg agcagcgtgg tgctgctctc cctgtaccga
      121 atcccgcgcc agctgggctg atgcgcacct tcctggccgc ctgcctgctc gcctgcgcga
      181 tgccgctggc ggccgccgag cgggtggtca gcctggcgcc ctcgatgtcg gaaatcatgc
      241 tcgagctggg cgccaccgag cgcctggtcg gcgtgctcga cggcggcccg cggccggccg
      301 ggctggcgca tctgccttcg gtggggcgct acggccaggt ggaactggaa accctgctgg
      361 cgctgcagcc cgatctgctg ctgctgtggc cggccagcgt gcccgaggcg cagcgcaggc
      421 aactcgaatc cttcggcatc ccgctctatg tcggcgaacc ccatgatttc gcgcagctcg
      481 ccgaacagtt cgccgagatc ggccggcggg tcggtttcgc cgcccgcggc caggcgctac
      541 gcgagcggtt cgagacgcgc ctggccgagc tgcgccagcg ctaccggcgc gagccgcggc
      601 tgccggtgtt ctaccaggtc tggcatgcgc cgttgtacac cctcggcggc cggcagatcg
      661 tcagcgatgc cctgcgcgtg tgcggcgcgc gcaacgtgtt cgccgacctg cgcctgccgg
      721 caccgcaggt caatgtagag gcggtgctgg cccgtgcgcc ggcggcgatc atcggcggca
      781 gcgacgccga gctgcagcct tggcgcgcct ggccgcagct gccggcggtg cgcctgaatc
      841 agctgtggcc ggtgccggac aagggcctgg agcggcccag cttccagatg ctgatggcca
      901 cggaaaagct ctgcgagcga ctggccggcg cacgcctcaa ctagtccgga aagacaaaag
      961 gccccgttcg gggccttttg catgtggtgc aggacgctta cagcttcggt gtccagacga
     1021 agccgagcat cgcgctgcgg ccttcctggc ggtagccgta gctcacgcct tcgtgctcgt
     1081 acagcgcgcg ctggtattcc ttgtccagca ggttgtcgac cttcgcctcc agcttcagct
     1141 cggaggtggc ctgccagctg ccgcgcaggc ccagcagccc gtagccgccc atctcctgct
     1201 ggttgtccgg gtcgtcgtag ctgctgctcg ccgcctgcca cgaggcgccg acggcgaagt
     1261 cgccgaagcg gcggtccaga tccaaactca gcgtacggcg ggcgcgacgg ttgagggtgt
     1321 ggccgttgtc gcggtcgcgc gggtcgacga aggcgacgcc cagttgcccc tgccagccga
     1381 acagctcctg ctgcacgctc gcctcgaagc cgtggatgcg cgcctcggcg atgttctgcg
     1441 ggatgaaggc ctggtcgctg gcgatggcgt cctcgatgtc ggtgcggtac agcgaggcct
     1501 cgaggcgggt ggtctcggcc agctggctgc gccactgcag ctcgtagctc ttggagtgct
     1561 ccggcttgag gctcgggttg ctgtagcccg ggtagtagag gtcgttgaag gtcggcgcgc
     1621 ggaagccttc gctgtaggac aggatcaggt cattggcggc gttcagcggc aggg
//
LOCUS       DATIHC010000478         1573 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_41180, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000478 DATIHC010000000
VERSION     DATIHC010000478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41180"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..199)
                     /locus_tag="VLF16_07840"
     CDS             complement(<1..199)
                     /locus_tag="VLF16_07840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008095657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70832.1"
                     /translation="MTYLLLKFVHITAAAFFIGGVFFEVMILSRATPVLEERPRAELS
                     HALGQRARKVMHWVVLALYGAG"
     gene            435..596
                     /gene="napE"
                     /locus_tag="VLF16_07845"
     CDS             435..596
                     /gene="napE"
                     /locus_tag="VLF16_07845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017516458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009325 - nitrate reductase complex
                     [Evidence IEA];
                     GO_function: GO:0008940 - nitrate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0042126 - nitrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase, NapE protein"
                     /protein_id="HSX70833.1"
                     /translation="MTVKTSDDSKGKETRLFLFLVICLFPILSVAIVGGYGFIVWMIQ
                     LIAGPPGPL"
     gene            610..921
                     /locus_tag="VLF16_07850"
     CDS             610..921
                     /locus_tag="VLF16_07850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017516460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HSX70834.1"
                     /translation="MPDSIQIASLIVHAQPQLMAAVTTNLRRLPGVELHQHSPEGKLV
                     VVIEAEHEAQIVATLGAVQSLPGVINAALVYHEVLEEQDSSLPTVMTSSPEMPDETQQ
                     T"
     gene            902..>1573
                     /locus_tag="VLF16_07855"
     CDS             902..>1573
                     /locus_tag="VLF16_07855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011666721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HSX70835.1"
                     /translation="MKLSRREFAKANAAAIAAAALGLPAFSSASNLITEADMTRLDWN
                     KAPCRFCGTGCGVMVATRDGRVVATHGDIKAEVNRGLNCVKGYFLSKIMYGTDRLTQP
                     LLRMKGGKYDKQGEFQPISWDEAFAIMAEKTKAALKAHGPQAVGMFGSGQWTVWEGYA
                     ANKLMKAGLRCNNIDPNARHCMASAVMGFMRSFGMDEPMGCYDDIEATDTFVLWGSNM
                     AEMHPI"
BASE COUNT          296 a          537 c          499 g          241 t
ORIGIN      
        1 ggccggcgcc gtacagcgcc aggacgaccc agtgcatgac cttgcgcgcg cgctggccga
       61 gggcgtgcga cagctcggcg cgcggccgct cttccagcac cggtgtggcg cggctgagga
      121 tcatcacctc gaagaacacc ccgccgatga agaaggccgc ggcggtgatg tggacgaact
      181 tcagcaacag ataggtcaag cgccctcctc gcccctcgca tcgccagtca ccggactcga
      241 cctggcggtg catcgtcgcg gcgaaaggcg tctcgggagc cctcgaaaaa accaccgcca
      301 tgatgcccgc cgcccggcgc gccaccatga tcccggtcaa ttcgggcgcg cttaggaggc
      361 gctatggtcg cttctcacaa gcttcacgat ccgggtctag actcagcgga cgcaacgaag
      421 gaggtgtcgt cgccatgacc gtgaaaacgt ctgacgacag caaaggcaag gaaacccggt
      481 tgttcctctt ccttgtgatt tgtctgttcc ccatcctctc cgtggccatc gtcggcggct
      541 acggtttcat cgtgtggatg atccagctga tcgccggccc gcccggcccg ctctagcctg
      601 ggggccgaca tgccagacag catccagatc gccagcctga tcgtgcacgc ccagccccag
      661 ctgatggcgg cggtgaccac caacctgcgt cgcctgccgg gcgtcgagct gcaccagcac
      721 agccccgaag gcaagctggt ggtggtgatc gaggcggagc acgaggcgca gatcgtcgcc
      781 accctcggcg ccgtccagag cctgcccggc gtgatcaacg ccgcgctggt ttaccacgaa
      841 gtcctcgaag aacaggactc gtccctcccg accgtgatga cctcctcgcc ggagatgcct
      901 gatgaaactc agcagacgtg aattcgccaa ggccaacgcc gccgccatcg ccgccgccgc
      961 gctgggcctg ccggcgttca gcagcgccag caacctgatc accgaggcgg acatgacccg
     1021 cctcgactgg aacaaggcgc cctgccgttt ctgcggcacc ggctgcgggg tgatggtggc
     1081 gacccgcgac ggccgcgtgg tggcgaccca tggcgacatc aaggccgagg tcaaccgcgg
     1141 cctgaactgc gtcaagggct acttcctgtc gaagatcatg tacggcaccg accggctgac
     1201 ccagccgctg ctgcgtatga agggcggaaa gtacgacaag cagggcgagt tccagccgat
     1261 cagctgggac gaggccttcg ccatcatggc cgagaagacc aaggccgcgc ttaaggccca
     1321 cggcccgcag gcggtcggca tgtttggttc cgggcagtgg acggtgtggg aaggctacgc
     1381 cgccaacaag ctgatgaagg ccggcctgcg ctgcaacaac atcgacccca acgcccgaca
     1441 ctgcatggcc tcggcggtga tgggcttcat gcgcagcttc ggcatggacg agccgatggg
     1501 ctgctacgac gacattgaag ccaccgacac cttcgtgctc tggggctcaa acatggccga
     1561 gatgcacccg atc
//
LOCUS       DATIHC010000479         2189 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31665, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000479 DATIHC010000000
VERSION     DATIHC010000479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2189
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31665"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..614)
                     /locus_tag="VLF16_07860"
     CDS             complement(<1..614)
                     /locus_tag="VLF16_07860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249155.1"
                     /note="part of a two-component regulatory system with CreB
                     or PhoB; involved in catabolic regulation; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     CreC"
                     /protein_id="HSX70836.1"
                     /translation="MPLGVRIFLVYFLFVGLAGWFVLSTVMDEIRPGVRQSTEETLVD
                     TANLLAEILRDEVKGGSLTQGRLPALLESYGRRQPQAQIWGVEKRAVNHRIYVTDARG
                     IVLLDSSGVAVGQDYSRWNDVYLTLRGEYGARSTRENPDDENSSVMYVAAPIRDGERI
                     IGVVSVAKPNSSLQPYIERSQRRLGWLGAGLIALGLLIGGALSW"
     gene            834..>2189
                     /locus_tag="VLF16_07865"
     CDS             834..>2189
                     /locus_tag="VLF16_07865"
                     /inference="COORDINATES: protein motif:HMM:NF015649.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BTAD domain-containing putative transcriptional
                     regulator"
                     /protein_id="HSX70837.1"
                     /translation="MDAVTSVAPLRLNLLGGFAVSWRGQPLDGFNYDKMRALLAYLSL
                     EHHREHSRETLAALLWESSPASTWRGNLRRTLSDLRRVLETPTGLELFVAGKNSLRFL
                     PEGRIDALRFRQGPQRCAESPACQQCPTCIEELEEAAALYRGDFLAGLDLPDCPDFED
                     WLLLQRESLRCHALALLEHLSNHFEQHGELQRALPHARRLVELDPWQESGQQRLMRLL
                     ALNGQSAAALSQYESFRNQLWKELGVHPSKECQALQQRIRQGELGATPVRVPPRPVTL
                     PPPPAELRQVTVLYCEISTPASVDPEEALALLAEPQAQCAQVIRAHGGYLVQAHGGGL
                     LAYFGYPQAREDAARIAVQAALALADACEPAQVRCGLHTGQIVTAPGQQMPDATGFTS
                     DLAIQVRQLAGYQEVTLSSATHRLVQGYFRCQPLQLCLLGTGASAGTIYRAEAASAAR
                     HR"
BASE COUNT          337 a          825 c          731 g          296 t
ORIGIN      
        1 caccacgaca gcgcgccgcc gatcaacagg ccgagggcga tcaacccggc gccgagccag
       61 cccaggcggc gctgggagcg ctcgatatag ggctgcagcg agctgttcgg cttggccacc
      121 gagaccacgc cgatgatccg ctcgccgtcg cggatcggcg ccgccacgta catcaccgag
      181 ctgttctcgt cgtccgggtt ctcgcgggtg gaacgggcgc cgtactcgcc gcgcagggtc
      241 aggtagacgt cgttccagcg cgagtagtcc tggccgacgg cgacgccgct ggagtcgagc
      301 aggacgatgc cgcgggcgtc ggtgacgtag atgcggtggt tcaccgcgcg cttctccacg
      361 ccccagatct gcgcctgcgg ctggcgccgg ccgtaggatt cgagcagcgc aggtaggcgg
      421 ccctgggtga ggctgccgcc cttcacctcg tcgcggagga tctcggccag caggttggcg
      481 gtgtccacca gcgtctcttc ggtggattgg cgcacgccgg ggcggatctc gtccatcacc
      541 gtgctgagca cgaaccagcc ggccaggccg acgaacagga agtacaccag gaagatgcga
      601 acccctagcg gcacgggcta actccccagc gaggcatgag catggatgac gtccttgtac
      661 gagagcgccg ggcggctgtc gccggccatc cggcttcgat ggcagaatag cggcgcggtc
      721 acggccgacg gcgcctgcac ggcgaaacga caaggccagc ataccgtaca aaccacaaga
      781 accggatctg cccaacccgc caggcccagg ccgcccagcc cgggaaaaat cccatggacg
      841 ctgtcacctc cgtcgccccg ctgcgcctga acctgctcgg cggcttcgcc gtctcctggc
      901 gtggccagcc gctggacggc ttcaactacg acaagatgcg cgccctgctc gcctacctga
      961 gcctggagca tcaccgcgag cacagccgcg agaccctcgc cgccctgctc tgggaatcca
     1021 gcccggccag cacctggcgc ggcaacctgc ggcgcaccct gtccgacctg cgccgggtgc
     1081 tggaaacgcc gaccggcctg gagctgttcg tcgccggcaa gaacagcctg cgcttcctgc
     1141 ccgagggccg catcgacgcc ctgcgttttc gccagggtcc gcagcgctgc gccgagagcc
     1201 ccgcctgcca gcagtgcccg acctgcatcg aggagctgga agaagcggcc gcgctgtacc
     1261 gcggcgactt cctcgccggc ctcgacctgc ccgactgccc cgacttcgag gactggctgc
     1321 tgctgcagcg cgaatccctg cgctgccacg cgctggccct gctcgagcac ctgagcaatc
     1381 actttgagca gcacggcgaa ctgcagcgcg ccctgcccca cgcgcgccgc ctggtggagc
     1441 tcgacccctg gcaggagagc ggccagcagc gcctgatgcg cctgctggcg ctgaacggcc
     1501 agagcgccgc cgccctgtcg cagtacgaga gtttccgcaa tcagctgtgg aaggaactgg
     1561 gcgtacaccc gagcaaggaa tgccaggccc tgcagcagcg catccgccag ggcgagctgg
     1621 gcgccacgcc ggtgcgcgtg ccgccgcgcc cggtgacgct gccgcctccg ccggccgaac
     1681 tgcgccaggt cacggtgctg tactgcgaga tttccacccc ggccagcgtc gaccccgagg
     1741 aggcgctggc cctgctggcc gagccccagg cccagtgcgc ccaggtgatc cgcgcccacg
     1801 gcggctatct ggtgcaggcc cacggtggcg gcctgctcgc ctatttcggc tatccccagg
     1861 cccgcgagga tgccgcccgc atcgccgtgc aggccgccct ggcgctggcc gacgcctgcg
     1921 agccggcgca ggtgcgctgc ggcctgcaca ccgggcagat cgtcaccgcg ccgggccagc
     1981 agatgccgga cgccaccggc ttcacctccg acctggcgat ccaggtgcgc cagctcgccg
     2041 gctatcagga agtgacgctg agcagcgcca cccatcgcct ggtgcagggc tatttccgct
     2101 gccagccgct gcagctgtgc ctgctcggca ccggtgccag cgccggcacc atctaccgcg
     2161 ccgaggcggc gagcgccgcg cgccaccgc
//
LOCUS       DATIHC010000480         3287 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29323, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000480 DATIHC010000000
VERSION     DATIHC010000480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3287
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29323"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..409)
                     /locus_tag="VLF16_07870"
     CDS             complement(<1..409)
                     /locus_tag="VLF16_07870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HSX70838.1"
                     /translation="MLTWLQRDSLDFPPLDRALQEPNGLLAAGGDLSVERLIAAYRHG
                     CFPWFSAGQPLLWWSPDPRTVLLPDEFHLSRSLAKLIRQQRFRVTFDQDFAAVIDGCA
                     GPRDYTDDTWITDAMRAAYLELHARGIAHSVEVW"
     gene            complement(454..1401)
                     /gene="trxB"
                     /locus_tag="VLF16_07875"
     CDS             complement(454..1401)
                     /gene="trxB"
                     /locus_tag="VLF16_07875"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017938294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HSX70839.1"
                     /translation="MSEVKHSRLIILGSGPAGYTAAVYAARANLKPVVITGIQPGGQL
                     TTTTEVDNWPGDVHGLTGPALMQRMQEHAERFDTEIVYDHIHTAELQSKPFTLKGDSG
                     TYTCDALIIATGASAQYLGLPSEEAFAGKGVSACATCDGFFYRNQVVCVVGGGNTAVE
                     EALYLSNIAKEVHLIHRRDKLRSEKILQDKLFDKAANGNVRLHWNQTLEEVLGDNTGV
                     TGVRLKSTADGSTQELQLAGVFIAIGHKPNTDLFSGQLEMRDGYLMVQGGGEGNATAT
                     SIEGVFAAGDVADHVYRQAITSAGAGCMAALDAEKYLDA"
     gene            1611..>3287
                     /locus_tag="VLF16_07880"
     CDS             1611..>3287
                     /locus_tag="VLF16_07880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013982937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HSX70840.1"
                     /translation="MKNSSTAAQAPAWRQQLHYRLKEGALIALGALCLILWMALLTYD
                     QNDPGWSHTSSAQQVQNAAGRAGAWFADILFMALGYFAYVFPLLLAVKTWQVFRNRHQ
                     PWQWNGWLFSWRLIGLVFLVLAGAGLAYIHFHSAAGLPASAGGALGESLGQLAINALN
                     VQGSTLLFLALFLFGLTVFTDLSWFKMMDLTGKITLDLIELVQSLITRWWEARLQRKQ
                     LVAQLREVDERVAEVAAPVVSDRREQAKVKERLIEREETLAKHMVARETRTAPIIAPP
                     PPPKAAEPSKRVLKEKQVSLFEDSAVAGTLPPISILDVAEKKQKSFSPESLEAMSRLL
                     EIKLKEFGVEVVVESVHPGPVITRFEIQPGIGVKVSRISNLAKDLARSLAVISVRVVE
                     VIPGKTTVGIEIPNEDRQIVRFSEVLSSNEYDDAKSPVTLALGHDIGGKPIITDLAKM
                     PHLLVAGTTGSGKSVGVNAMILSILFKSTPEEARMIMIDPKMLELSIYEGIPHLLCPV
                     VTDMKEAANALRWSVAEMERRYKLMAAMGVRNLAGFNRKVKDAEEAGTPLH"
BASE COUNT          568 a         1020 c         1110 g          589 t
ORIGIN      
        1 gccatacctc gaccgagtgg gcgataccac gggcatgcag ttcgaggtag gcggcgcgca
       61 tggcgtctgt gatccaggtg tcgtcggtgt agtcgcgcgg gccggcgcag ccgtcgatga
      121 cggcggcgaa atcttgatcg aaggtcaccc ggaagcgctg ctgacgaatc agcttggcca
      181 ggctgcgtga caggtggaat tcatcgggca gcagcacggt gcgcgggtcg ggcgaccacc
      241 acagcagcgg ctgccctgca ctgaaccagg ggaaacagcc gtgacggtag gcggcgatta
      301 ggcgctcgac ggacaggtcg ccgccggcgg ccagcaggcc gttgggctct tgcagggcgc
      361 ggtccagcgg tgggaagtcc agcgaatcgc gctgcagcca ggtcaacata agagggagga
      421 gggcagggcg ggtgcggctg cacccgctgc agctcaggcg tcgagatact tctcggcgtc
      481 cagcgcggcc atgcagccgg cgccggccga ggtgatggcc tggcggtaga cgtgatcggc
      541 cacatcgccg gcggcgaata cgccttcgat gctggtggcg gtggcattgc cttcgccgcc
      601 accctggacc atcaggtagc cgtcgcgcat ctccagctgg ccgctgaaca ggtcggtgtt
      661 cggcttgtgg ccgatggcga tgaacacgcc ggccagttgc agctcctggg tgctgccatc
      721 ggcggtgctc ttcaggcgta cgccggtcac gccggtattg tcgcccagca cctcttccag
      781 ggtctggttc cagtgtaggc gtacgttgcc gttggccgcc ttgtcgaaca gcttgtcctg
      841 gaggatcttc tccgagcgca gcttgtcgcg gcggtggatc aggtgcactt ccttggcgat
      901 gttggacaga tacagcgctt cctcgacggc ggtgttgccg ccgccgacca cgcagaccac
      961 ctggttgcga tagaagaagc cgtcgcaggt ggcgcaggcg gaaacgccct tgccggcgaa
     1021 ggcttcctcg gatggcaggc caaggtactg ggcgctggca ccggtggcga tgatcagtgc
     1081 gtcgcaggtg taggtgccgc tgtcaccctt gagggtgaac ggcttgctct gcaactcggc
     1141 ggtgtggata tggtcgtaga cgatctcggt gtcgaagcgc tccgcgtgct cctgcatgcg
     1201 ctgcatcagc gccgggccgg tcaggccatg gacatcgccg ggccagttat cgacttcggt
     1261 ggtggtggtc agctggccgc cgggctggat gccggtgatg acgacaggct tgaggttggc
     1321 gcgggcagcg tacacggcgg cggtgtaacc ggccgggccg gagcccagga tgatcaggcg
     1381 ggaatgcttg acttcgctca taaaaagacc ccataagcct ttgtcacaaa agagaatgcg
     1441 tggtccaatt gacgggcccg caagagatgg ccggtatgct acaccgaagc agttggaccg
     1501 gcaaaacggt gcctcggcct ggcacgatac ctgtaaattt gtacaatggt tgcctctttg
     1561 cgtgttccac cgatcgtcag tcgcgccccg cgcgcaggaa tgacagcgtt ttgaagaatt
     1621 ccagcacagc agcccaggct ccggcctggc gtcagcaatt gcactaccgc ctcaaggaag
     1681 gtgccctgat cgcgctcggc gcgctctgtc tgatcctctg gatggctctg ctgacctacg
     1741 atcaaaacga tccgggctgg agccatacca gcagcgcgca gcaggtgcag aacgcggccg
     1801 gccgcgccgg cgcctggttc gccgacattc tgttcatggc cctgggctac ttcgcctacg
     1861 tgtttccgct gctgctggca gtcaagacct ggcaggtctt ccgtaatcgc caccagccgt
     1921 ggcaatggaa tggctggctg ttctcctggc gcctgatcgg cctggtcttc ctggtgctgg
     1981 ccggcgcagg cctggcctac attcatttcc attccgcggc cggcctgccg gcctcggccg
     2041 gtggtgcgct gggcgagagc ctggggcagc tggcgatcaa cgccctcaat gtgcagggca
     2101 gtacgctgct gttcctggcg ctgttcctgt tcggcctgac cgtgttcacc gacctgtcct
     2161 ggttcaagat gatggacctg accggcaaga tcaccctcga cctgatcgag ctggtgcaga
     2221 gtctgattac tcgctggtgg gaagcacgtc tgcagcgcaa gcaactggtg gctcagttgc
     2281 gcgaggtgga cgagcgtgtc gccgaggtgg ccgctccggt ggtgtcggat cgccgcgaac
     2341 aggccaaggt caaggaacgc ctgatcgagc gcgaagaaac cctggccaag cacatggtcg
     2401 cgcgcgaaac ccgcaccgcg ccgatcatcg cgccgccgcc cccgcccaaa gccgccgagc
     2461 cgagcaagcg cgtgctcaaa gaaaagcagg tgtccctgtt cgaggactcc gccgtcgccg
     2521 gcacgctgcc gccgatttcc atcctcgacg tggcggagaa gaagcagaag agcttctcgc
     2581 ccgaatccct cgaggctatg tcgcgcctgc tggagatcaa gctcaaggag ttcggcgtcg
     2641 aggtggtggt ggagtccgtg cacccgggcc cggtgatcac ccgcttcgag attcagccgg
     2701 gcatcggcgt caaggtcagc cgcatctcca acctggccaa ggacctggcg cgctcgctgg
     2761 cggtgatcag tgtgcgcgtg gtcgaggtga tcccgggcaa gaccaccgtc ggcatcgaga
     2821 ttcccaacga agaccgccag atcgtgcgtt tctccgaggt gctgtcgtcc aacgaatacg
     2881 acgatgccaa gtcgccggtg accctggccc tcggccacga tatcggcggc aagccgatca
     2941 tcaccgacct ggccaagatg ccgcacctgc tggtggccgg taccaccggc tccggtaaat
     3001 cggtgggcgt caacgccatg atcctgtcga tcctgttcaa gtccacgccg gaagaggcgc
     3061 ggatgatcat gatcgacccg aagatgctcg aactctccat ctacgaaggc atcccgcacc
     3121 tgttgtgccc ggtggtgacc gacatgaagg aagccgccaa cgccctgcgc tggtcggtgg
     3181 ccgagatgga gcgtcgctac aagctgatgg ccgccatggg cgtgcgcaac ctggccggct
     3241 tcaaccgcaa ggtgaaggac gccgaggagg ccggcacgcc gctgcac
//
LOCUS       DATIHC010000481         3154 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29333, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000481 DATIHC010000000
VERSION     DATIHC010000481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3154
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29333"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..547
                     /gene="argB"
                     /locus_tag="VLF16_07885"
     CDS             <1..547
                     /gene="argB"
                     /locus_tag="VLF16_07885"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009614127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HSX70841.1"
                     /translation="SAIGLTGKDAELIRARKLKVSRQTPEMTQPEIIDIGHVGEVTGV
                     NTELLNMLVKGDFIPVIAPIGVGADGESYNINADLVAGKVAEALKAEKLMLLTNIAGL
                     MDKQGEVLTGLTTEQVDSLIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAV
                     LLEIFTDSGVGTLITNRKRHH"
     gene            complement(568..1119)
                     /locus_tag="VLF16_07890"
     CDS             complement(568..1119)
                     /locus_tag="VLF16_07890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003283355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4124 domain-containing protein"
                     /protein_id="HSX70842.1"
                     /translation="MASAAGAQGEGVKSYRYKDDQGRVVLSRQGVPPEFIANGYEVLD
                     SDGRVLRTVAPAPSLEERRRLAAEKARAKSDAQLLRIYSEPADVDRARDRKLAELDGI
                     ISVAQSNLHSLRTQQANLQGKAAEFERAGRQVPEHLLVQIDNLKAEQAGVEKDIQRYR
                     EGRAEAEASFAADRVRLIKLRGK"
     gene            complement(1191..1832)
                     /gene="pyrE"
                     /locus_tag="VLF16_07895"
     CDS             complement(1191..1832)
                     /gene="pyrE"
                     /locus_tag="VLF16_07895"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HSX70843.1"
                     /translation="MQAYQREFIRFAIERGVLRFGEFTLKSGRTSPYFFNAGLFDSGL
                     ALAKLGRFYASALVDAGIGFDVLFGPAYKGIPLAAATAVALAEHHDRDLPWCFNRKEA
                     KDHGEGGTLVGAPLAGRVMIVDDVITAGTAIREVMQIIQAQGAQAAGVLIALNRQERG
                     QGELSAIQEVERDYGMPVVSIVSLEQVLDYLAGDAELKKHLPAVEAYRAQYGI"
     gene            1925..2704
                     /locus_tag="VLF16_07900"
     CDS             1925..2704
                     /locus_tag="VLF16_07900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HSX70844.1"
                     /translation="MRIISVNVNGIQAAVERGLLSWLQAQNADVICLQDTRVSSFELD
                     DPAYQLDGYFLYAADAEVPAQGGVALYSRLQPKAVIHGLGFEMADRYGRYLQADFDKV
                     SIATLLLPSGLNGDESLNHKFKFIDDFTGYLDKQRRKRREYIYCGSLYVAHQKLDVKN
                     WRDSQQLPGFLAPERAWMDEVIGTMGYVDALREVSREGDQYSWWPDSEQAEMLNLGWR
                     FDYQLLTPGMRRIVRNAKMPRQPRFSQHAPLIVDYDWLLSV"
     gene            complement(2917..>3154)
                     /locus_tag="VLF16_07905"
     CDS             complement(2917..>3154)
                     /locus_tag="VLF16_07905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004886651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF808 family protein"
                     /protein_id="HSX70845.1"
                     /translation="VGTAAMFMVGGGILTHGIPGAHDLIHHWVEAIHAIPAAGGVLAV
                     LAPTLIDALFGVLVGALVLVVVSAVGKAWSALRA"
BASE COUNT          598 a         1034 c          974 g          548 t
ORIGIN      
        1 cagcgccatc ggtctgactg gcaaggacgc cgagttgatc cgcgcgagga agctcaaggt
       61 cagccggcag acgccagaga tgacccagcc ggagatcatc gatatcggtc acgtgggcga
      121 ggtgacgggc gtcaacaccg aactgctgaa catgctggtc aagggcgact tcattccggt
      181 gatcgccccg atcggcgtgg gcgcggacgg tgagtcctac aacatcaacg ccgacctggt
      241 cgccggcaag gtggccgagg cgctgaaggc cgagaagctg atgctgctga ccaacatcgc
      301 cggcctgatg gacaagcagg gcgaggtgct gaccggtcta accaccgagc aggtggacag
      361 tctgatcgcc gacggcacca tctacggcgg catgctgccg aagattcgtt gcgccctgga
      421 ggccgtgcag ggcggcgtga ccagcgcgca tatcatcgac ggtcgcgtgc cgaatgcggt
      481 gctgctggag atcttcaccg acagcggcgt cggcaccctc atcaccaacc gcaagcgcca
      541 tcactgatgg cgccgcgcgg ctgagggtta tttgccgcgc aacttgatca aacgcaccct
      601 atcagcggcg aaggatgcct ctgcctcagc tcgcccttcc cggtaacgct ggatgtcttt
      661 ctcgacgccg gcttgctcgg ccttgaggtt gtcgatctgc accagcaggt gctcgggcac
      721 ttgacgcccc gcccgctcga actcggcggc cttgccctgc agattagcct gctgggtgcg
      781 cagcgaatgc aggttgcttt gcgccacgct gatgattccg tccagctccg ccagctttcg
      841 atcgcgagca cggtctacgt cagctggctc ggagtagata cgcaggagtt gagcatcgga
      901 cttggcccga gccttttctg cagccagccg ccgacgctcc tcgagactag gagcaggcgc
      961 aacggtacgc agcactcggc catcgctgtc gagcacctcg tagccattgg caatgaactc
     1021 cggcggtacc ccttgccggc tcaacaccac tctgccctga tcgtccttgt aacgatacga
     1081 cttcacaccc tcaccttgcg cgccggcggc tgaggccata tgaggtagcg cagcaattat
     1141 cagaatcaag aactttgccg gtcggagcat ggggcgttcc ttgttcgagt tcagataccg
     1201 tactgcgcgc ggtaggcctc caccgccggc agatgcttct tcagctcggc atcgccggcc
     1261 agataatcca gcacctgctc cagcgagaca atgctgacca ctggcatgcc gtaatcgcgc
     1321 tccacttcct ggatcgccga caactcaccc tggccgcgct cctggcggtt cagcgcgatc
     1381 agcacacccg ccgcctgggc gccctgggcc tggatgatct gcatcacctc acgaatcgcg
     1441 gtgccggcgg tgatcacgtc gtcgacgatc atcacccgac cggccagcgg cgcgccgacc
     1501 agggtgccgc cctcgccgtg gtccttggct tccttgcgat tgaagcacca gggcagatcg
     1561 cggtcatggt gttcggccag cgccacggcg gtggccgcgg ccagcgggat gcccttgtag
     1621 gccgggccga acagcacgtc gaagccgatg ccggcgtcca ccagcgcgga ggcataaaaa
     1681 cgccccagct tggccagagc cagaccgctg tcgaacaggc cggcattgaa gaaataggga
     1741 ctggtgcgcc cggatttgag cgtgaactca ccgaagcgca gcacgccgcg ctcgatggca
     1801 aaacggatga attcgcgttg atacgcttgc atgcaaagct ccgtacggca cggatttagc
     1861 tatgaattta gctaatggga atgagctcgg gtatcataca cgcaggtgtt tttgggggcc
     1921 atttatgcgg atcatcagtg tgaacgtgaa tggtattcag gccgcggtcg agcgaggttt
     1981 gctcagctgg ctgcaggccc agaatgccga cgtgatctgc ctgcaggata caagagtctc
     2041 ctccttcgaa ctggacgatc cggcctatca gctggatggc tactttctct acgcggccga
     2101 tgccgaagtg cccgcccagg gtggcgtggc gctctattcg cgcctgcaac ccaaggcggt
     2161 gatccacggc ctcggcttcg agatggccga ccgttacgga cgttatctgc aggccgactt
     2221 cgacaaggtg agcatcgcca ccctgttgct gccgtccggc ctgaacggcg acgagagcct
     2281 gaaccacaag ttcaagttca tcgacgactt caccggctac ctggacaagc agcgccgcaa
     2341 gcgccgcgag tacatctact gcggctcgct ctacgtcgca caccagaagc tggacgtgaa
     2401 gaactggcgt gacagccagc agctgccggg cttcctcgcg ccggagcgcg cctggatgga
     2461 cgaggtgatc ggcaccatgg gctacgtcga cgcgttgcgt gaagtcagcc gcgagggcga
     2521 ccagtacagc tggtggccgg acagcgaaca ggcggagatg ctcaatctcg gctggcgctt
     2581 cgactatcag ctgctcacgc ccggcatgcg ccggatcgtg cgcaacgcca agatgccgcg
     2641 ccagccacgc ttctcccagc atgcgccgct gattgtcgac tacgactggc tgctcagcgt
     2701 ttaagcagcc agttcgcccc aagcctcaga gcctgtctac gatcttttga gctaaagcca
     2761 aggcggggcc gggcaagggc gcggagcaat gagcagcact cgcccttcgg cccgcgccag
     2821 acgcgttggt ggcaagccgc gttccgagcc catccgacca gcccgcagtc gctactgcgt
     2881 tgcaacgcag cctggccgac gatcttcggc aggctctcag gcgcgcagcg cgctccaggc
     2941 cttgcccacg gcactcacca cgaccagcac cagcgcaccc accagcacac cgaacagcgc
     3001 gtcgatcagg gtcggcgcca gtacggccag cacaccgcct gccgccggta tcgcatggat
     3061 cgcttcgacc cagtgatgga tcaggtcatg ggcgcccggg atgccatggg tgagaatgcc
     3121 gccgccgacc atgaacatgg ccgcggtacc gacc
//
LOCUS       DATIHC010000482         1883 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34058, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000482 DATIHC010000000
VERSION     DATIHC010000482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1883
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34058"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..297
                     /locus_tag="VLF16_07910"
     CDS             <1..297
                     /locus_tag="VLF16_07910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016782002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HSX70846.1"
                     /translation="ELSHRVQGNWRCNSGEAVLDAALRGFGLCQLPDYYVQPHLRSGA
                     LVDLLPQQRPPHTAVWALYPQQRHLSPKVRLLVELLKEGLAQRPEYREAITPTP"
     gene            complement(355..972)
                     /locus_tag="VLF16_07915"
     CDS             complement(355..972)
                     /locus_tag="VLF16_07915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003260669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA];
                     GO_process: GO:0018142 - protein-DNA covalent
                     cross-linking [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SOS response-associated peptidase"
                     /protein_id="HSX70847.1"
                     /translation="MSGRYALFRWPQVIAGLPGFPEGFAQRWNLSPGAQVLFIHQPEG
                     ELQASAGRWGLTPAWLDDFGKAPAHARAETLAEQPMFREAFRQRRCLLPANGFYEWRG
                     QANRKRPYWMSSEGLLYFAGLWEAYPTAGQTYLSVAMITAPASYLRRPVVLDQAATRV
                     WLDPQSSVEQLQAVLAAPQPPLRERVLSTLINDPAFEGPECLTPG"
     gene            complement(998..1258)
                     /locus_tag="VLF16_07920"
     CDS             complement(998..1258)
                     /locus_tag="VLF16_07920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011912294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2007 domain-containing protein"
                     /protein_id="HSX70848.1"
                     /translation="MQRIYEPQDLLEAELLLSMLASEGVEAHLVGRHLLGAMGELPAL
                     GLLALVVDDEDAEHARRLIAGYNAAAPLPGEEPDGCPGVLLC"
     gene            complement(1258..1440)
                     /locus_tag="VLF16_07925"
     CDS             complement(1258..1440)
                     /locus_tag="VLF16_07925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008719780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPXCG motif-containing cysteine-rich protein"
                     /protein_id="HSX70849.1"
                     /translation="MLETQLYQCPYCWEQAEALLDLSAGDQEYVEDCPVCCRPILFEL
                     RTDGEQWSLDVRREDD"
     gene            1524..>1883
                     /locus_tag="VLF16_07930"
     CDS             1524..>1883
                     /locus_tag="VLF16_07930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019372187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol acyltransferase"
                     /protein_id="HSX70850.1"
                     /translation="MMGEFDSIRPYADHEVPAVLARLLSDDTFLGTLTHFRFPRLAGP
                     FGWLLKPLIAHRLRRETAGIASVDALQARIEPYIDRTVERATDGITFSGLDRLKAGAP
                     YLFLANHRDIVMDPAFVN"
BASE COUNT          322 a          681 c          585 g          295 t
ORIGIN      
        1 gagctgagcc atcgggtcca gggcaactgg cgttgcaaca gcggcgaggc ggtactcgac
       61 gccgccctgc gcggcttcgg cctgtgccag ctgccggact actacgtgca gccgcatctg
      121 cgcagcggcg cgctggtcga cctgctgcca caacagcgcc cgccgcatac cgccgtatgg
      181 gcgctatacc cgcagcagcg ccacctctcg cccaaggtgc gcctgttggt ggagctattg
      241 aaggaaggcc tggcccagcg cccggagtac cgcgaagcaa tcaccccgac cccgtagggt
      301 ggactcagga gcgaagcgaa cagtccacca ttcgctccca ggtgacgatc ccacctaccc
      361 cggagtaagg cattccggcc cctcgaaggc aggatcattg atcagcgtac tcagcacccg
      421 ctcgcgcagc ggcggctgcg gcgccgccag cacggcctgc agttgctcca ccgagctctg
      481 cgggtcgagc cagacgcggg tagcggcctg atccagcaca acgggccggc gcagatagct
      541 ggccggcgcg gtgatcatcg ccacgctcag gtaggtctgc cccgccgtcg gataggcttc
      601 ccacaggccg gcgaaataca gcaggccttc gctgctcatc cagtacggtc gcttgcgatt
      661 ggcctggccg cgccactcgt agaagccgtt ggccggcagc aggcaacggc gctggcggaa
      721 ggcctcgcga aacatcggct gttcggccag ggtctcggcc cgggcatggg ccggcgcctt
      781 gccgaagtcg tcgagccagg ccggcgtcag cccccagcgt ccggccgacg cctgcagttc
      841 gccttcgggc tgatgaatga acagcacctg ggcgccgggc gacaggttcc agcgctgcgc
      901 aaagccttcg ggaaagccgg gcagaccggc aatgacctgg ggccagcgga acagggcgta
      961 gcgtccactc atgggaaaag gggtatccgg caaacgctca gcagagcagc acgccggggc
     1021 agccgtcggg ctcctcgccc ggcaacgggg cggcggcatt gtacccggcg atcaagcgcc
     1081 gcgcgtgctc cgcgtcctcg tcgtccacta ccagcgccag cagccccagg gccggcagct
     1141 cgcccatcgc gcccagcaga tggcgcccca ccaggtgcgc ctccacgccc tcgctggcca
     1201 gcatgctcaa cagcagctcg gcctccagca ggtcttgcgg ctcgtagatg cgctgcatca
     1261 atcgtcctcc cgacgcacat ccagcgacca ttgctcgcca tcggtacgca attcgaacag
     1321 gatcggccga caacacaccg ggcagtcctc gacgtattcc tgatcacccg cagagaggtc
     1381 gagcagcgcc tcggcctgct cccagcagta ggggcactgg tacagctgtg tttccagcat
     1441 cgcggcctcc gtgtgacttg ccgttataat cgccggtcta ttgctggccc gatgggcatt
     1501 ccgagcagcc ttactacgag aacatgatgg gcgaattcga ttccatccga ccctacgccg
     1561 accacgaagt ccccgccgta ctggcgcgtc tgttgagcga cgacaccttc ctcggcaccc
     1621 tgacccattt ccgtttcccg cgcctggccg ggcctttcgg ttggctgctc aaacctctta
     1681 tagcccatcg cctgcgtcgc gagacggccg gcatcgcttc ggtggatgcc ctgcaggcgc
     1741 gcatcgagcc ctatatcgac cgcaccgtgg agcgcgccac cgatggcatc accttctccg
     1801 ggctggaccg gctgaaggcc ggcgcgccct acctgttcct ggccaaccac cgcgacatcg
     1861 tgatggaccc ggccttcgtc aac
//
LOCUS       DATIHC010000483         2164 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17050, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000483 DATIHC010000000
VERSION     DATIHC010000483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2164
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17050"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..473)
                     /locus_tag="VLF16_07935"
     CDS             complement(<1..473)
                     /locus_tag="VLF16_07935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-coenzyme A synthetase N-terminal
                     domain-containing protein"
                     /protein_id="HSX70851.1"
                     /translation="MFEINRHPVPDSVRQRALIDDKAYQRLYRQSIEQPEEFWSEQAK
                     QFLHWFKPWEQLHHSDLAKGEAQWFKGGQLNVAYNCIDRHLEKRGEQIAIIWEGDNPA
                     ESAHITYNKLHHNVSRLANVLKSRGVKKGDRVCIYMPMVPEAAYAMLACTRIGAI"
     gene            complement(622..>2164)
                     /gene="pgi"
                     /locus_tag="VLF16_07940"
     CDS             complement(622..>2164)
                     /gene="pgi"
                     /locus_tag="VLF16_07940"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012312664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004347 - glucose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HSX70852.1"
                     /translation="FERFSMSTSGIFLDYSKNLISDETRDLLVDLAKEAGLQEAIEAL
                     FNGEQVNASEGRPALHTALRRPIGDCVMVDGANVMPEVHRVLNQMTDLVGRIHSNLWR
                     GYSEKTITDVVNIGIGGSFLGPQLVSEALLPFTQNGVRCHYLANIDGSEFHELSAKLN
                     AETTLFIVSSKSFGTLETLKNAQAARSWYLARGGTEEKLYRHFIAVTSNKEAAIAFGI
                     REKNIFPMWDWVGGRYSLWSAIGLPIALAVGMSNFKELLSGAYSMDTHFRTAPFERNM
                     PVLLALLGVWYGNFWDAQSHAILPYDHYLRNITKHLQQLDMESNGKSVRQDGTAASTE
                     TGPVIWGGVGCNGQHAYHQLLHQGTPLIPADFIVPVVSYNPVADHHQWLYANCLSQSQ
                     ALMLGKCRSEAEAELRAKGLAEEEVQRLAPHKVIPGNRPSNTLVLERISPRRLGALVA
                     MYEHKVFVQSVIWGINAFDQWGVELGKELGKGVYQRLTGWDQPPAEDASTQGLIDFFR
                     GRHRG"
BASE COUNT          321 a          664 c          763 g          416 t
ORIGIN      
        1 tggatggcgc cgatgcgcgt gcaggccagc atggcgtagg ccgcctccgg caccatgggc
       61 atgtagatgc acacccggtc gcccttcttc acgccgcggc tcttcagcac gttggccagg
      121 cgactgacgt tgtggtgcag cttgttgtag gtgatgtgcg cggattcggc cgggttgtcg
      181 ccttcccaga tgatggcgat ctgttcgccg cgcttttcca ggtggcgatc gatgcagttg
      241 taggcgacgt tgagctggcc gcccttgaac cactgcgcct cgcccttggc caggtcgctg
      301 tggtgcaact gttcccaggg cttgaaccag tgcaggaact gcttggcctg ctcgctccag
      361 aactcttccg gctgctcgat ggactggcgg tagaggcgct ggtaggcctt atcgtcgatg
      421 agggcgcgct ggcgcacgct gtcgggcacg gggtggcggt tgatctcgaa catggcgggg
      481 cctttgttat tgtgggtccg aagtgcagtc aggttggacc aggcctgtag ccggttcaag
      541 cccgcttttc gaatccgacc ttcgccaggc ccggaatgca cgaacccggc gcgcggccgg
      601 gttcgtgttg acgccgatgg ctcagccgcg gtggcgaccg cggaagaagt cgatcaggcc
      661 ctgggtcgag gcgtcctcgg ccggcggctg gtcccagccg gtgaggcgct ggtagacgcc
      721 cttgccgagt tccttgccca gctccacgcc ccactggtcg aaggcattga tgccccagat
      781 cacgctctgc acgaacacct tgtgctcgta catggcgacc agcgcgccga gacggcgcgg
      841 gctgatgcgc tcgagcacca gggtgttgct cgggcggttg cccgggatca ccttgtgcgg
      901 cgccaggcgc tgcacctcct cctcggcgag gcccttggcg cgcagctcgg cctcggcctc
      961 gctgcggcac ttgccgagca tcagcgcctg gctctgcgac aggcagttgg cgtacagcca
     1021 ctggtggtgg tcggccaccg ggttgtagct gaccaccggt acgatgaagt ccgccggaat
     1081 cagcggggtg ccctggtgca gcaactggtg gtaggcgtgc tggccgttgc agccgacgcc
     1141 gccccagatc accgggccgg tctcggtgct ggccgcggtg ccgtcctggc gcacgctctt
     1201 gccgttggat tccatgtcca gctgctgcag gtgcttggtg atgttccgca ggtagtggtc
     1261 gtacggcagg atggcgtggc tctgcgcatc ccagaagttg ccgtaccaga cgccgagcag
     1321 ggccagcagc accggcatgt tccgctcgaa gggggcggtg cggaagtgcg tgtccatgct
     1381 gtaggcgccg gacagcagct ccttgaaatt cgacatgccg acggccaggg cgatgggcag
     1441 gccgatggcc gaccacagcg agtagcggcc accgacccag tcccacatcg ggaagatgtt
     1501 cttctcgcgg atgccgaagg cgatggcggc ttccttgttg ctggtcaccg cgatgaagtg
     1561 gcggtacagc ttttcctcgg tgccgccgcg ggccaggtac catgagcgcg cggcctgggc
     1621 gttcttcagg gtctccaggg tgccgaagga cttggaggag acgatgaaca gggtggtctc
     1681 ggcattcagc ttggccgaca gctcgtggaa ctcgctgccg tcgatattcg ccaggtagtg
     1741 acagcgcacg ccgttctggg tgaacggcag cagggcctcg gagaccagct gcgggccgag
     1801 gaaggagccg ccgatgccga tgttgaccac gtcggtgatg gtcttctcgc tgtagccgcg
     1861 ccacaggttg ctgtggatgc ggccgaccag gtcggtcatc tgattgagca cacggtggac
     1921 ttccggcatc acgttggcac cgtcgaccat cacgcagtcg ccgatcggcc ggcgcagggc
     1981 ggtgtgcagg gcggggcggc cctcggaggc gttgacctgc tcgccattga acagcgcctc
     2041 gatggcctcc tgcaggccgg cttccttggc caggtcgacc agcagatcgc gggtctcgtc
     2101 gctgatgagg ttcttcgaat agtcgaggaa gatcccgcta gtgctcatgg agaagcgctc
     2161 gaag
//
LOCUS       DATIHC010000484         3163 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29336, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000484 DATIHC010000000
VERSION     DATIHC010000484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3163
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29336"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..571
                     /locus_tag="VLF16_07945"
     CDS             <1..571
                     /locus_tag="VLF16_07945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016495464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HSX70853.1"
                     /translation="LDPDFFVVGKPIAGGVPCGIFGCSAAMAEAMTESRKRASAGSHG
                     HGHSGMGTTLSANALAMHCMRANLEQVMIPAAYAHMLPLAKRLADGFRSLIGKHDLKW
                     SVTELGARSEFQFCPVSPKTGAEAEAAFHDELQMALHLYLINRGILITPFHNMTLCCP
                     STTAEDVDKLIGMLDQALTELLAIPGARL"
     gene            757..2124
                     /locus_tag="VLF16_07950"
     CDS             757..2124
                     /locus_tag="VLF16_07950"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase family protein"
                     /protein_id="HSX70854.1"
                     /translation="MQFANPQEARDFLEQHPEVRSIELMLIDANGIPRGKLLHRDELL
                     AIYENGRPLPSSILALTIQGEDVEESGLVWEVADADCWTYPIPGSLTLQPWRAVPTGQ
                     LQVSMHPTQGLPAAPADPRHVLVRAIDALKADGYHPVMAVELEFYLLDKTRDANGRPQ
                     PALQMNGVRPQAPQVYGVYELEQLQPFLDDLYAACEVQGLPVRTAISEYAPGQVELTL
                     EHRFDALQAVDEGVRYKRLVKGVANKHGLQACFMAKPFGDLAGSGLHMHVSLADAAGN
                     NLMASEDPHGTPLLKQAIGGMMATLNDALAIFCPNANSFRRFQANSYAPLAKSWGVNN
                     RTVSFRVPGGPAKSRHVEHRICGADANPYLAAAAILAGIHHGIRHQIDPGEAIVGNGY
                     EQARETLPTDWLTALRNLEQSSWAREALGEDFLQVFLAIKWAEFRQFMGEVGEQDWRW
                     YLTHT"
     gene            complement(2296..2886)
                     /locus_tag="VLF16_07955"
     CDS             complement(2296..2886)
                     /locus_tag="VLF16_07955"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017518596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HSX70855.1"
                     /translation="MSLNIVLVAGSSRADSQTAKVARYLAARLQQRDVQTQIVDLGCS
                     ALPLWPAEDGHDHWPAMAERLRSADALVVLSPEWNGMASPALKNFFLYAGRHELAHKA
                     ALLVGVSSGQGGAYPLSELRASSYKNCRICFIPEQLIVRQVEAVLNGETAADADDQRI
                     RARADWALDVLLEYAEALRGLPQRIDWSEPQFGNGM"
     gene            complement(2883..>3163)
                     /locus_tag="VLF16_07960"
     CDS             complement(2883..>3163)
                     /locus_tag="VLF16_07960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008070758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fatty acid hydroxylase"
                     /protein_id="HSX70856.1"
                     /translation="LLERTISTPSTHSAHHGLNADDGVTHYKGNYGNLLFFWDVLFGT
                     AKITRRRPAQYGIEDMAPVSWQSELFWPLVRAPKAEPEQHAELKELAR"
BASE COUNT          528 a         1120 c         1034 g          481 t
ORIGIN      
        1 cctcgacccg gacttcttcg tggtcggcaa gccaatcgcc ggcggcgtgc cgtgcggcat
       61 cttcggctgc agcgcggcga tggccgaggc catgaccgag tcgcgcaaac gcgccagcgc
      121 aggcagccat ggccacggcc acagcggcat gggcacgacg ctttcggcca acgccctggc
      181 catgcactgc atgcgcgcca atctggaaca ggtgatgatc ccggccgcct acgcgcacat
      241 gctgccgctg gccaagcgcc tggccgatgg cttccgttcg ctgatcggca agcacgacct
      301 caaatggtcg gtgaccgagc tgggcgcgcg cagcgagttc cagttctgcc cggtgtcgcc
      361 gaagaccggc gccgaggccg aagccgcctt ccacgacgag ctgcagatgg ccctgcacct
      421 gtacctgatc aaccgcggca tcctgatcac cccgttccac aacatgaccc tgtgctgccc
      481 gagcaccacg gcggaggatg tggacaagct gatcggcatg ctcgaccaag ccctcaccga
      541 gctgctggcc atccccggcg cccggcttta acgccctctt cggtttacgg cagaggttgg
      601 ggagagggca atgccccttc cctctccccc ggcccctctc ccacaagtgg gagaggggag
      661 acaacaaagc cggtagcccg gatgcaatcc ggggaggact atcccggatt gcatccgggc
      721 tacagatcac gcgtcacgga acgccatgag gtatccatgc aattcgccaa cccccaggaa
      781 gcccgcgact tcctcgaaca gcacccggaa gtgcgcagca tcgagctgat gctgatcgac
      841 gccaacggca tcccgcgcgg caagctattg caccgtgacg agctgctggc catctacgag
      901 aacggccggc cgctgcccag ctcgatcctg gcgctgacca tccagggcga ggacgtggaa
      961 gagagcggcc tggtctggga agtggccgac gccgattgct ggacctatcc catccccggc
     1021 tcgctgaccc tgcagccctg gcgcgccgtg cccaccggcc agttgcaggt cagcatgcac
     1081 ccgacccagg gcctgccggc cgcgccggcc gacccgcgcc acgtgctggt gcgcgccatc
     1141 gacgcgctca aggccgatgg ctaccacccg gtaatggcgg tggagctgga gttctatctg
     1201 ctggacaaga cccgcgacgc caacggccgg ccgcaaccgg cgctgcagat gaatggcgtg
     1261 cgcccgcagg cgccgcaggt gtatggcgtg tacgagctgg agcagctgca gccgtttctc
     1321 gacgacctct acgccgcctg cgaggtgcag ggcctgccgg tgcgcacggc gatttccgaa
     1381 tacgcgccgg gccaggtcga gctgaccctg gagcaccgct tcgacgccct gcaggcggtc
     1441 gacgaaggcg tgcgctacaa gcgcctggtc aagggcgtgg ccaataaaca cggcctgcag
     1501 gcctgtttca tggccaagcc gttcggcgac ctggccggca gcggcctgca catgcacgtc
     1561 agcctggcgg acgccgcagg caacaacctg atggcctcgg aagatcctca cggcacgccg
     1621 ctgctgaaac aggcgatcgg cggcatgatg gccacgctca acgacgccct ggcgatcttc
     1681 tgccccaacg ccaattcctt ccgccgcttc caggccaaca gctacgcgcc gctggccaag
     1741 agctgggggg tgaacaaccg caccgtgtcg ttccgcgtgc cgggcggccc ggccaagagc
     1801 cggcatgtgg agcaccgcat ctgcggcgcc gacgccaacc cgtacctggc agcggcggcg
     1861 atcctcgccg gcatccacca tggcatccgt caccagatcg acccgggcga agccatcgtc
     1921 ggcaacggct acgagcaggc ccgcgagacc ctgccgaccg actggctgac cgcgttgcgc
     1981 aacctggagc agtcgagctg ggccagggag gcgctgggcg aggacttcct ccaggtattc
     2041 ctggccatca agtgggccga gttccgccag ttcatgggcg aggtcggcga gcaggactgg
     2101 cgctggtacc tcacccacac ctgatccggc ctgcggtggg taaggctacg ccgttaccca
     2161 ccctactcgc tgacccacgt ctgacggctc gtgcggtcca ccctggagag tttgtgtagg
     2221 gtggaaaaac tgcgcagcat tttccaccgc cgcttcctcg agcccgtacc cgcacctggc
     2281 gcgcgccggc tcgcatcaca tgccgttgcc gaactgcggc tcgctccagt cgatgcgctg
     2341 gggcaggccg cgcagcgcct cggcgtactc cagcagcacg tccagggccc agtcggcccg
     2401 cgcgcggatg cgctggtcgt cggcatccgc ggccgtctcg ccgttcagaa ccgcctccac
     2461 ctggcgcacg atcagctgct cggggatgaa gcagatgcgg cagttcttgt agctggaggc
     2521 gcgcagctcg gacagcggat aggcgccgcc ctgccccgac gacaccccca ccagcagcgc
     2581 cgccttgtgc gccagctcat ggcgcccggc gtagaggaag aagttcttca acgccgggct
     2641 ggccataccg ttccactccg ggctgagcac caccagcgca tcggcgctgc gcaggcgctc
     2701 ggccatggcc ggccagtggt catggccatc ctccgccggc cacagcggca gggcgctgca
     2761 ccccaggtcg acgatctgcg tctgcacgtc gcgctgttgc aggcgcgcgg ccagataacg
     2821 ggcgaccttg gcggtctggc tgtcggcgcg gctggagccg gcgaccagga cgatattcag
     2881 gctcatcggg ccagctcctt cagttctgcg tgttgctcgg gctcggcctt gggcgcacgt
     2941 accagcggcc agaacagctc gctctgccag ctcaccggcg ccatgtcctc gatgccgtac
     3001 tgcgcggggc ggcggcgggt gatcttggcc gtgccgaaca gcacgtccca gaagaacagc
     3061 aggttgccgt agttgccctt gtagtgggtc acgccatcgt cggcattcag gccgtggtgg
     3121 gcggaatggg tcgacggggt ggagatggtg cgctcgagca gcc
//
LOCUS       DATIHC010000485         2151 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12936, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000485 DATIHC010000000
VERSION     DATIHC010000485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2151)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2151
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12936"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..681
                     /locus_tag="VLF16_07965"
     CDS             <1..681
                     /locus_tag="VLF16_07965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003300507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSX70857.1"
                     /translation="VLDLDLSEPQAPRLVIELRLPGPQRQMAELAMGVALKTMKLLCG
                     STFVPQTVLLSSSSPLPPARYRRHFGSEVYLGQARNALVFGERQLTQRIERQDPTLHR
                     TLVQYLSQIHLLGAPDLLEQVRRLVLRLLPIQQCRLALVAEQIGLHERSLQRQLAELG
                     HRFDELVENIRRERADCYLAERDIPMSQIAGMLGYSEQSVFNRACRRWFDMTPGARRR
                     LLLGQHPG"
     gene            complement(678..>2151)
                     /locus_tag="VLF16_07970"
     CDS             complement(678..>2151)
                     /locus_tag="VLF16_07970"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HSX70858.1"
                     /translation="RYTEDRLLRGRGLALLLEWRRELPAELLTSTLRLTLLNAWALLL
                     TGRLDESQTYIDALERGLPQPDARRQRELIAQIKALRGKLAFHSGDAEASRDLIAEAI
                     AELPARAWSQRLLSQLLQVEQAMIEGNFDQAQTLNRIAIKQAREHGSLAIESLMALEH
                     AKLLEIRGELLRAETLLSRLYTELTEAWGNEPSPMRARAQLLRAGLLLQRGCYRDAES
                     AFASGLQEAKSCADPAAVWGHLGLAELSALQGDLPAAFERIADAERLMQYDHISVPLY
                     QGLILLTKARLWLSQGRHAQAEKALAGLLQQGTQLPPFGAPELNTRLQLAFLQSQLPG
                     EQQGAALESLQAMRCQALQEGRRPLACEIGFSLAESLHANNKQGQAKQALLDALALAR
                     QVGLASVERAFALRNPATMRWAAESGGADDNSPAELLSRRELDVLKLIAQGFSNQQIA
                     ESLFISLHTVKTHAQRINFKLGVERRTQAVARAKELGLTD"
BASE COUNT          328 a          735 c          718 g          370 t
ORIGIN      
        1 gtcctggatc tcgacctcag cgagccgcaa gcaccacgac tggtcatcga gctgcgcttg
       61 ccgggtccgc aacggcagat ggcggagttg gccatgggcg tggcattgaa gaccatgaag
      121 ctgctctgcg gctcgacgtt cgtcccgcag accgtgctgc tgtcatccag cagcccgttg
      181 ccgccggcgc gctaccgccg ccatttcggc agcgaggtct atctcggcca ggctcgcaat
      241 gcgctggtat tcggcgagcg ccaactgacg cagcgcatcg aacgacagga cccgaccctg
      301 catcgcaccc tggtgcagta cctcagccag attcatctgc tcggcgcacc cgacctgctt
      361 gaacaggtac gccgcctggt gctgcgcctg ctgccgatcc agcagtgtcg cctggcgctg
      421 gtcgccgagc agatcggcct gcacgagcgc agcctgcagc gtcagctggc cgagttgggc
      481 cacaggttcg acgaactggt cgagaacatc cgccgcgagc gtgccgactg ttacctggcc
      541 gagcgcgaca ttcccatgtc gcagatcgcc ggcatgcttg gctacagcga acagagcgtt
      601 ttcaaccgcg cctgccggcg ctggttcgac atgacgccag gcgctcggcg acgtctattg
      661 ctgggccagc accctggcta gtcggtcagg cccagctcct tggcccgcgc cacggcctgg
      721 gtacgtcgct ccaccccgag cttgaagttg atgcgctggg cgtgggtctt caccgtgtgc
      781 agggagatga acaggctctc ggcgatctgc tggttggaga agccttgggc gatcagcttg
      841 agcacgtcca gctcacggcg gctgagcagt tccgccggtg agttgtcatc ggctccgcca
      901 ctctcggcgg cccagcgcat cgtcgccggg ttgcgcagag cgaaggcgcg ctcgacgctg
      961 gccaggccca cctgccgggc cagcgccagg gcatcgagca atgcctgctt ggcctggccc
     1021 tgcttgttgt ttgcatgcag gctttcggcc aggctgaagc cgatctcgca ggccaatggc
     1081 cggcgaccct cctgcaacgc ctggcaacgc atggcctgca ggctttccag cgctgcgccc
     1141 tgctgttcgc ccggcagctg cgactggaga aaggccagtt gcaggcgcgt gttcagctca
     1201 ggagcgccga atggcggcag ctgcgtgccc tgttgcagca gccccgccag agccttctcg
     1261 gcctgcgcat ggcgtccctg gctcagccac aggcgcgcct tggtcagcag gatcaggccc
     1321 tggtacagcg gcacgctgat gtggtcgtac tgcatcaggc gctcggcatc ggcaatgcgc
     1381 tcgaaggccg ccggcagatc gccctgcagg gcactcagct cagccaagcc gagatgcccc
     1441 cagaccgccg ccggatcggc gcaggacttg gcctcctgca gcccggaggc aaacgccgac
     1501 tcggcatcgc gatagcagcc gcgctgcaac agcaggccgg cgcgcagtag ttgggcgcgc
     1561 gcgcgcatgg ggctgggttc attgccccag gcctcggtca gttcggtgta caggcggctg
     1621 agcagggtct cggcgcgcaa cagttcgccg cggatttcca ggagcttggc gtgctccaga
     1681 gccatcaggc tctcgatggc caggctgcca tgctcgcggg cctgcttgat ggcgatgcgg
     1741 ttgagcgtct gcgcctggtc gaagttaccc tcgatcatgg cctgctcgac ctgcagcaac
     1801 tggctcagca ggcgctggct ccacgcccgc gctggcaact cggcaatggc ctcggcaatc
     1861 aggtcccggg aggcctcggc gtcaccgctg tggaacgcca gtttgcctct gagcgccttg
     1921 atctgtgcga tcagttcgcg ctggcgccgc gcgtcgggct gcggcagtcc gcgttccagc
     1981 gcatcgatat aggtctggct ctcatcgaga cgccccgtga gcaacagggc ccaggcattg
     2041 agcagggtca ggcgcagcgt gctggtcagc agctcggcgg gcagctcgcg tcgccactcc
     2101 agcagcaggg ccaggccgcg cccgcgcagc aggcggtcct cggtgtaacg c
//
LOCUS       DATIHC010000486         2144 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8415, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000486 DATIHC010000000
VERSION     DATIHC010000486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2144
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8415"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..431
                     /locus_tag="VLF16_07975"
     CDS             <1..431
                     /locus_tag="VLF16_07975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015276164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HSX70859.1"
                     /translation="AEPDLSRAETLRFNFEWAAALSGDVAKGGSYKYWQINGQAWDIN
                     DKTCAERPIASLKKDGHYIFVLRNMAQYQHPIHLHGMSFKVLDSDRKDIEPYFTDTYL
                     LGKNETARIAFVADNPGVWMFHCHVIDHMETGLMAAIEVV"
     gene            484..963
                     /gene="tadA"
                     /locus_tag="VLF16_07980"
     CDS             484..963
                     /gene="tadA"
                     /locus_tag="VLF16_07980"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003462742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008251 - tRNA-specific adenosine
                     deaminase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0002100 - tRNA wobble adenosine to inosine
                     editing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HSX70860.1"
                     /translation="MKRPQIIDRSQDERFMREALALAAEGAERGEVPVGALLVQGGEV
                     LGRGFNCPIGTHDPSAHAEMVAIRAAAAAVQNYRLPGSTLYVTLEPCSMCAGLIVHSR
                     IARVVYGATEPKAGVAISRGQFFDQAFLNHRVLIEGGLLGEECSAMLSAFFKARRGG"
     gene            complement(982..>2144)
                     /gene="mltF"
                     /locus_tag="VLF16_07985"
     CDS             complement(982..>2144)
                     /gene="mltF"
                     /locus_tag="VLF16_07985"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017698851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008933 - lytic transglycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0000270 - peptidoglycan metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltF"
                     /protein_id="HSX70861.1"
                     /translation="PVLAAAGLVASEGRKSQAKFSRAYLDVTPQVIYRNGQRRPTRPE
                     DLIGRRILVLKGSSHAEQLAELKKTLPALQYEESSDVEVVDLLRMVDEGQVDLTLVDS
                     NELAMNQVYFPNVRVAFDLGEARSLGWAVAAGEDDSLLREANHFLKLVEENGSLQRLK
                     ERYYGHVDVLGYVGAYTFAKHLQQRLPRYEKQFKQAAEKHKVDWRLLAAIGYQESLWT
                     PDATSKTGVRGLMMLTQNTAQAMGVVNRLDPTQSIFGGAKYFTLVHSGLTESMTEPDR
                     TWFALAAYNIGIAHLADARKMAKAEGLNPNKWLDVQKMLPRLSQKRWYSKTRYGYARG
                     GETVHFVRNVRRYYDILNWVTQPQLEGARVAESGLHLPAVDKTPPKAEPAGR"
BASE COUNT          331 a          690 c          748 g          375 t
ORIGIN      
        1 tggccgagcc ggacctgtcc cgcgccgaga ccctgcgctt caacttcgag tgggcggcgg
       61 cgctgtcggg cgacgtggcc aagggcggca gctacaagta ctggcagatc aacgggcagg
      121 cctgggacat caacgacaag acctgcgccg agcgccccat cgccagcctg aaaaaggatg
      181 gccattacat cttcgtgctg cgcaacatgg cccagtacca gcatcccatc cacctgcacg
      241 ggatgagctt caaggtgctc gactcggacc gcaaggacat cgagccctat ttcaccgaca
      301 cctacctgct gggcaagaac gagacggcgc ggatcgcctt cgtcgccgat aatcccggtg
      361 tgtggatgtt ccactgccat gtcatcgacc acatggaaac cggcctgatg gccgccatcg
      421 aggtggtctg aggcgtgagc tgaaaatcgg cacagcgcct gcgagtacct ttacggaaga
      481 agcatgaaga gaccccagat catcgaccgc agccaggatg agcgcttcat gcgcgaggcg
      541 ctggcgctgg ccgccgaggg cgccgagcgg ggcgaggtgc cggtcggtgc gctgctggtg
      601 cagggcggcg aggtgctggg gcgcggcttc aactgcccga tcggcaccca cgatcccagc
      661 gcacatgccg agatggtggc gatccgcgcc gcggccgccg cggtgcagaa ctaccgcctg
      721 cccggcagca cgctatacgt gacgctggag ccctgcagca tgtgcgccgg gctgatcgtg
      781 cattcgcgca tcgcccgggt ggtgtacggc gccaccgagc ccaaggccgg ggtcgcgatc
      841 agtcgcggcc agttcttcga tcaggcgttt ctcaaccaca gggtgctgat cgagggcggg
      901 ctgctgggcg aggagtgcag cgcgatgctc agcgccttct tcaaggcgcg tcgcggcggc
      961 tgaggtcaga ctgggcgccg ctcagcgtcc ggcgggctcg gctttcggcg gggtcttgtc
     1021 cacggccggc aggtgcaggc cgctctcggc cacgcgcgcg ccttccagct gcggctgggt
     1081 cacccagttg aggatgtcgt agtagcgccg cacgttgcgc acgaagtgca ccgtctcgcc
     1141 gccgcgggcg tagccgtagc gggtcttgct gtaccagcgc ttctgcgaca ggcgcggcag
     1201 catcttctgc acgtccagcc acttgttcgg gttcagccct tcggccttgg ccatcttgcg
     1261 cgcgtccgcc aggtgggcga tgccgatgtt gtaggcggcc agggcgaacc aggtgcggtc
     1321 cggctcggtc atgctttcgg tcaggccgct gtgcaccagg gtgaagtact tggcgccacc
     1381 gaagatgctc tgggtcgggt ccagccggtt gaccacgccc atcgcctggg cggtgttctg
     1441 ggtcagcatc atcagcccgc gcacgccggt cttggaggtg gcgtcggggg tccacagcga
     1501 ctcctgatag ccgatggcgg cgagcaagcg ccagtccacc ttgtgcttct ccgccgcttg
     1561 cttgaactgc ttctcgtagc gcggcaggcg ctgctgcagg tgcttggcga aggtgtaggc
     1621 accgacatag ccgagtacgt cgacatggcc gtagtagcgt tccttgaggc gctgcaggct
     1681 gccgttctct tcgaccagct tgaggaagtg gttggcctcg cgcagcaggc tgtcgtcctc
     1741 gccggcggcc acggcccagc cgaggctgcg cgcttcgccc aggtcgaagg cgacgcgcac
     1801 gttggggaag tagacctggt tcatcgccag ttcgttggag tcgaccaggg tcaggtcgac
     1861 ctggccctcg tcgaccatgc gcagcaggtc gaccacttcg acgtcgctgg actcctcgta
     1921 ctgcagcgcc ggcagggtct tcttcagttc ggcgagctgc tcggcatggc tgctgccctt
     1981 gagcaccaga atgcgccgac cgatcagatc ctcggggcgg gtggggcggc gctggccgtt
     2041 gcggtagatg acctgcgggg tgacatcgag gtaggcgcgg gagaatttcg cctggctctt
     2101 gcggccctcg ctggcgacca gaccggcggc ggccagcacc gggc
//
LOCUS       DATIHC010000487         1589 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_14834, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000487 DATIHC010000000
VERSION     DATIHC010000487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1589)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1589
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14834"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1589)
                     /gene="alaS"
                     /locus_tag="VLF16_07990"
     CDS             complement(<1..>1589)
                     /gene="alaS"
                     /locus_tag="VLF16_07990"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020307297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HSX70862.1"
                     /translation="TPSNEGRGYVLRRIVRRACRHGNKLGAKGSFFYQIVAALVAEMG
                     EAFPELKQQQAHIERVLKTEEEQFAKTLEQGLRILEQDLAGLQGKVISGDIVFKLYDT
                     YGFPVDLTADIARERELSIDEEGFEREMEAQRERARSASAFGMDYNSLVKVDGDTVFM
                     GYAGTRGNGKVLALFKAGAAVDRLAEGDEGVVVLDQTPFYAESGGQIGDSGYLQGADV
                     RFDVRDTTKAGGAFLHHGVVAQGGLSVGADISAEVDASVRQATALNHSATHLLHAALR
                     QVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKLLEDMVNAEIRKNSAVETEETDI
                     DTAKAKGAMALFGEKYGDQVRVLSMGGGFSVELCGGTHVSRTGDIGLFKITSEGGVAA
                     GVRRIEAVTGAAALAWLNGAEEQLKEAANLVKGSRDNVLDKLSALIERNRQLEKELEQ
                     LKAKAASAAGNDLAGSAVDVKGVKVLASRLDGLDGKALLAMVDQLKNKLGSAVILLGG
                     VLEDKVVLVAGVTQDLTAKLKA"
BASE COUNT          234 a          547 c          519 g          289 t
ORIGIN      
        1 gccttgagct tggcggtcag gtcctgggtc acgccggcga ccagcacgac tttgtcctcg
       61 agcacgccgc cgagcaggat caccgcgctg ccgagtttgt tcttcagctg gtcgaccatg
      121 gccagcagcg ccttgccgtc cagcccgtcg aggcgagagg ccaggacctt gacgcccttg
      181 acgtccaccg cggagccggc gaggtcgttg ccggccgcgc tggcggcctt ggccttgagc
      241 tgctccagct ctttctccag ctgacggttg cgctcgatca gcgcggacag cttgtccagc
      301 acgttgtcgc ggctgccctt gaccaggttc gccgcttcct tgagctgctc ctcggcgccg
      361 ttcagccagg ccagagccgc cgcgccggtc accgcctcga tgcggcgcac gccggcagcc
      421 acgccgcctt cgctggtgat cttgaacagg ccgatgtcgc cggtacgcga cacatgggta
      481 ccgccacaca gctcgacgga gaagccgccg cccatgctca gcacgcgcac ctgatcgccg
      541 tacttctcgc cgaacagcgc catggcgccc ttggccttgg cggtgtcgat gtcggtttcc
      601 tcggtctcga ccgcggagtt cttgcggatc tcggcattga ccatgtcttc gagcagcttc
      661 agctgctccg gcttgatcgc ctcgaagtga ctgaagtcga agcgcaggcg ctgactgtcg
      721 accagcgagc ccttctgctg tacgtgatcg cccagcacct gacgcagtgc ggcgtgcagc
      781 aggtgagtgg ccgagtggtt cagcgcggtg gcctggcgca ccgaggcgtc gacctcggcg
      841 ctgatgtcgg caccgacgct caggccgccc tgggcgacca cgccgtgatg caggaaggcg
      901 ccgccggcct tggtggtgtc acgcacgtcg aagcgcacgt cggcgccctg caggtagccg
      961 ctgtcgccga tctggccgcc ggactcggca tagaacggag tctggtccag caccaccacg
     1021 ccctcgtcgc cttcggcgag gcggtcgacg gcagcgccgg ccttgaacag cgccaagacc
     1081 ttgccgttgc cacgagtgcc ggcgtaaccc atgaagacgg tatcgccgtc gaccttgacc
     1141 aggctgttgt agtccatgcc gaaggcgctg gcggaacggg cgcgctcgcg ctgggcctcc
     1201 atctcgcgtt cgaagccttc ttcgtcgatg gacagctcgc gctcacgggc gatgtcggcg
     1261 gtcaggtcca ccgggaagcc gtaggtgtcg tacagcttga acacgatgtc gccggaaatg
     1321 accttgccct gcaggccggc caggtcctgc tcgagaatcc tcaggccctg ctccagggtc
     1381 ttggcgaact gctcttcctc ggtcttcagc acgcgctcga tgtgcgcctg ctgctgcttg
     1441 agctcgggga aggcttcgcc catctcggcc accagggcgg cgacgatctg atagaagaag
     1501 ctgcccttgg cgcccagctt gttgccatga cggcaggcgc ggcgaacgat gcgacgcagc
     1561 acgtagccac ggccttcatt ggacggggt
//
LOCUS       DATIHC010000488         2693 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_6172, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000488 DATIHC010000000
VERSION     DATIHC010000488.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2693
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6172"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..801
                     /locus_tag="VLF16_07995"
     CDS             <1..801
                     /locus_tag="VLF16_07995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020305728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HSX70863.1"
                     /translation="ALTPEAVVRLAEAAHRRYGFQDFKLKGGVMHGAEEMDAVRAIKA
                     RFPNARVTLDPNGAWSLAEAIELCKGQGHVLAYAEDPCGPENGYSGREVMAEFKRATG
                     IPTATNMVATDWRQMSHSLRLGAVDIPLADPHFWTMQGAVRLGQMCEEFGLTWGSHSN
                     NHFDISLAMFTHAAAAVPGRITAIDTHWIWQEGEERLTREPLQIRDGQVRVPDAPGLG
                     ITPDMARIMAAHELYNAVANGARDDAMAMQYLVPGWRYHPKRPSLGRH"
     gene            832..1809
                     /locus_tag="VLF16_08000"
     CDS             832..1809
                     /locus_tag="VLF16_08000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HSX70864.1"
                     /translation="MKKTIRASLLSALVGVGALTAHAAAVADAANWPSRPVQVVVIAN
                     PGGDTDFNARMMAKYFNEITGKNMVVTNVAGGGGTLAAEQVKGAAPDGNTILFTHPGQ
                     LIVNEVAGLSEDSYEAFDIACFAGVDKSAIFVASKDSGVTSMKDLVEQSKAKPASITY
                     GTEMGSFSHVQGLMLEKLTGIQLKMVDAGTVADRVVAMLGGRVDMGAISYGSVQDYVE
                     GGQMVALGQPNAERNALLGNVPTLKEQGLDITLDKPYVVAFPKGTDPVIVQKMADIMK
                     QITEKPEYAEELKKFKQPVAYADTEEAKAILAKTRDDFMQFKDQLRQGN"
     gene            1872..2399
                     /locus_tag="VLF16_08005"
     CDS             1872..2399
                     /locus_tag="VLF16_08005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter TctB
                     family protein"
                     /protein_id="HSX70865.1"
                     /translation="MRTIMNNKEAIIGVIMIVCSLAYLVMAYQLPDHDGVDAATLPVL
                     LGGFLTLLGVMQLFSAFTSAASAAPQAAQTPATPQQEAPTPETAPPVVEPRTVLLTLG
                     LILGYMALLGTVGFPIMTVVYLYLQFLVLIPAGHKARHIAYLLIAVSCSAAIFLLFRE
                     AFDLMLPAGPLNDFL"
     gene            2410..>2693
                     /locus_tag="VLF16_08010"
     CDS             2410..>2693
                     /locus_tag="VLF16_08010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter permease"
                     /protein_id="HSX70866.1"
                     /translation="MLELLQQGFGAVFSLNILMFMAIGVAVGIVFGAVPGLSATMAVA
                     LCLPLTFTMGPQAGLSLLVALFVGATSGGLISAILLKIPGTPSSIATVFDG"
BASE COUNT          476 a          964 c          826 g          427 t
ORIGIN      
        1 gccctgacac cggaagcagt cgtgcggctg gccgaggccg cgcaccggcg ctacggcttc
       61 caggatttca agctcaaggg cggcgtgatg cacggcgccg aggaaatgga cgccgtgcgc
      121 gcgatcaagg cgcgcttccc caacgcccgc gtcaccctcg accccaatgg cgcttggtcg
      181 ctggccgaag ccatcgagct gtgcaagggc cagggccatg tgctggccta tgccgaagac
      241 ccctgcggcc cggagaacgg ctactccggt cgcgaggtga tggccgaatt caagcgcgcc
      301 accggcatcc ccaccgccac caacatggtc gccaccgact ggcggcagat gagccattcg
      361 ctgcgcctgg gcgccgtgga cattccgctg gccgacccgc acttctggac catgcagggc
      421 gccgtgcgcc tgggccagat gtgcgaggaa ttcggcctga cctggggctc gcactccaac
      481 aaccatttcg acatctccct ggcgatgttc acccatgccg ccgccgccgt acctggccgc
      541 atcaccgcca tcgacacgca ctggatctgg caggaaggcg aggagcgact gacccgcgag
      601 cccctgcaga tccgcgacgg ccaggtgcgg gtgcccgacg cccccggcct gggcatcact
      661 cccgacatgg cgcggatcat ggccgcccat gagctctaca acgcagtggc caacggcgcg
      721 cgcgacgacg ccatggccat gcagtacctg gttccgggtt ggcgatacca cccgaaacgt
      781 cccagcctcg gccgacactg attgccgcgg ttccctcacc ggagaattcc aatgaaaaaa
      841 accatccgag cctctcttct ttctgccctg gtcggcgtcg gcgcactcac cgcccacgcc
      901 gccgccgtcg ccgatgcggc caactggccg agccgccccg tgcaggtggt ggtgatcgcc
      961 aaccccggcg gcgacaccga cttcaacgcc cgcatgatgg ccaagtactt caacgagatc
     1021 accggcaaga acatggtggt gaccaacgtc gccggcggcg gcggcacgct ggcggccgag
     1081 caggtcaagg gcgcggcgcc ggacggcaac accattctct tcacccaccc gggccagctg
     1141 atcgtcaacg aggtggccgg cctctccgag gacagctacg aggccttcga catcgcctgc
     1201 ttcgccggcg tcgacaagag cgcgattttc gtcgcctcca aggattccgg cgtgaccagc
     1261 atgaaagacc tggtcgagca gtccaaggcc aagccggcca gcatcaccta cggcaccgag
     1321 atgggcagct tctcccacgt gcagggcctg atgctagaga agctcaccgg catccagctg
     1381 aagatggtcg acgccggcac cgttgccgac cgcgtggtgg ccatgctggg cggtcgcgtg
     1441 gacatgggcg ccatcagcta cggctcggtg caggactacg tcgaaggcgg gcagatggtc
     1501 gcactgggcc agcccaacgc cgagcgcaac gccctgctgg gcaacgtccc cacgctcaag
     1561 gagcagggcc tggacatcac cctcgacaag ccctacgtcg tggccttccc caagggcacc
     1621 gacccggtga tcgtgcagaa gatggccgac atcatgaagc agatcaccga gaagcccgag
     1681 tacgccgagg agctgaagaa attcaagcag ccggtggcct atgcggacac cgaagaggcc
     1741 aaggccatcc tggccaaaac ccgtgacgac ttcatgcagt tcaaggatca gctgcgccaa
     1801 ggcaattgag ttgagaagcg gcgccggcgg acgacaagcc cggcgccgcg cactcgcgct
     1861 tcgaggttcc catgcgcacc atcatgaaca ataaagaagc gatcatcggc gtcatcatga
     1921 tcgtctgcag cctcgcctac ctggtgatgg cctaccagct acccgaccac gacggcgtcg
     1981 acgccgccac cctgcccgtg ctgctgggcg gcttcctcac cctgcttggg gtgatgcagc
     2041 tgttcagcgc cttcaccagc gccgcgagcg ccgccccgca ggcagcgcaa acgccggcca
     2101 ccccccagca ggaggcgccc acgcccgaga ccgcaccacc ggtcgtcgag cccagaaccg
     2161 tgttgctcac cctgggcctg atcctcggct acatggccct gctcgggacg gtgggctttc
     2221 cgatcatgac ggtcgtctac ctctacctgc agttcctggt gctgataccg gccggacaca
     2281 aggccaggca tatcgcctac ctgctgatcg ccgtgtcctg ctcggccgcc atcttcctgc
     2341 tgttccgcga ggccttcgat ctgatgctgc ccgccggccc cctgaacgat ttcctctgag
     2401 gatccgacca tgctcgaatt actgcagcaa ggcttcggtg ccgtcttctc gctgaacatc
     2461 ctgatgttca tggccatcgg cgtggccgtg ggcatcgtct tcggcgcggt gccggggctg
     2521 tccgccacca tggcggtggc gctgtgcctg ccgctcacct tcaccatggg cccgcaggcc
     2581 ggcctgtcgc tgctggtcgc cctgttcgtc ggcgccacgt cgggagggct gatctcggcg
     2641 attctgctga agattcccgg caccccctcg tcgatcgcca cggtgttcga cgg
//
LOCUS       DATIHC010000489         4100 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10698, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000489 DATIHC010000000
VERSION     DATIHC010000489.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4100
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10698"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..844)
                     /locus_tag="VLF16_08015"
     CDS             complement(<1..844)
                     /locus_tag="VLF16_08015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003246285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HSX70867.1"
                     /translation="MKILVTGASGFIGGRFARFALEQGLGVRVNGRRPEAVAHLTKRG
                     AEFVQGDLADPDLAHRLCRDVEMVVHCAGAVGTWGTREHFHRGNVLLTQNIIEGCLGQ
                     KVRRLVHLSSPSVYFDGKAHVGLKEEQVPRSFVDHYGATKYLAEQKVFEAQEFGLEVI
                     ALRPRFVTGAGDTSIFPRLIEMHRKGRLMVIGDGLNKVDFTSMQNLNDALFSSLLAAG
                     PALGKVYNISNGAPVPLWDVVNFVLRQFDLPPVTRHMPFGLAYAAATVNEAVCKLLPG
                     RPEPA"
     gene            complement(943..1836)
                     /locus_tag="VLF16_08020"
     CDS             complement(943..1836)
                     /locus_tag="VLF16_08020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator ArgP"
                     /protein_id="HSX70868.1"
                     /translation="MLMFDYKLLAALAAVVEQGGFERAAQLLGLSQSAVSQRIKLLEA
                     RVGQPVLLRAAPPAPTEIGRRLLNHVQQVRLLERDLQGQVPALAEDQPAERLRIALNA
                     DSLATWWAPLVGDFVAEHRLLLDHVVDDQDVGLKRMRAGEVAGCVCAAERPVAGARAL
                     PLGAMRYRALASPAFVTRHFADGVDGATLARVPSIVFGADDQLQHRFLAGLGVGGGFA
                     HHLCPSSEGFVRLTCAGLGWGMVPELQVREQVARGELVELLPDRPLDVPLYWHHWRNG
                     GELLSSLTRHLERRVGDWLVT"
     gene            1926..2327
                     /locus_tag="VLF16_08025"
     CDS             1926..2327
                     /locus_tag="VLF16_08025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015503518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HSX70869.1"
                     /translation="MTGETDLSTLLASLSPRLNPGRFVFCSVAQPSVVQMAAALGSFR
                     ETEGTTLILAREEADRLGLAYDYLAAWITLEVHSSLAAVGLTAAFARVLADEGISCNV
                     IAGYHHDHLFVAEADAERALAALQRLGAESC"
     gene            2329..2937
                     /locus_tag="VLF16_08030"
     CDS             2329..2937
                     /locus_tag="VLF16_08030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017936875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE/ArgO family amino acid transporter"
                     /protein_id="HSX70870.1"
                     /translation="MWQSYLNGLLVAAGLIVAIGAQNAFVLAQSLRREHHLPVAALCV
                     LCDAILVAAGVFGLATLLAQSPMLLAVARWGGAAFLLWLGVQALRRAFQPQALQQRDS
                     GPRSRRAVLLAALAVTLLNPHVYLDTVLLIGSLGAQQPVPGAYALGAASASLIWFFTL
                     ALGAAWLAPWLARPATWRVLDLAVAAMMFAVAAQLVLRAPGA"
     gene            2993..3835
                     /locus_tag="VLF16_08035"
     CDS             2993..3835
                     /locus_tag="VLF16_08035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016492397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HSX70871.1"
                     /translation="MDTTVFTVVMAAAALHAGWNALLKIGLDRYLTASLIQIGAGSLA
                     LLALPFFDVPLASAWPFIGLSALLHIGYNIFLSRAYQHGDLSQVYPIARGSSPLLVAL
                     LAVPAGDLLPPGQWAGLLVLVAGIWLMAWRGGHPGTRLNGALLFNALATAVCIAGYTL
                     ADALGARSNGDAIGYALWLFVVNGLVAGVVIALRRGPRIFLQLGPHWRGGLGGGAMSM
                     LAYSLVIWAATQAPVALVSALRETSVLFALLIGWLFLKEPMPLPRLLACAVIVAGVVA
                     MRCV"
BASE COUNT          581 a         1507 c         1359 g          653 t
ORIGIN      
        1 gcgcgggctc gggccgcccc ggcagcagct tgcacaccgc ctcgttgacc gtggccgccg
       61 cgtaggccag gccgaacggc atgtgcctgg tcaccggtgg caggtcgaac tggcgcagca
      121 cgaagttgac cacgtcccac agcggcaccg gcgcgccatt gctgatgttg tacaccttgc
      181 ccagcgccgg gcccgcggcc agcaggctgc tgaacagggc gtcgttgagg ttctgcatgc
      241 tggtgaagtc gaccttgttg aggccgtcgc cgatcaccat caggcgaccc ttgcggtgca
      301 tctcgatcag ccgcgggaag atgctggtgt cgccggcccc ggtgacgaaa cgcggacgca
      361 gggcgatcac ctccaggccg aactcctggg cctcgaacac cttctgctcg gccaggtact
      421 tggtggcgcc gtagtggtcg acgaagctgc gcggcacctg ttcttcctta agcccgacgt
      481 gggccttgcc gtcgaaatac acggacggcg aggacaggtg caccaggcgc cgaaccttct
      541 ggcccaggca gccctcgatg atgttctggg tcagcagcac gttgccgcgg tggaagtgct
      601 cgcgggtgcc ccaggtgccg accgcgccgg cgcagtgcac caccatttcc acgtcgcggc
      661 acagccggtg cgccaggtcc gggtcggcca agtcgccctg gacgaactcc gcgccacgct
      721 tggtcaggtg cgccaccgct tccggccgcc ggccgttgac ccgcacgccg agcccctgct
      781 cgagggcgaa acgggcgaag cgcccaccga tgaagccgct cgccccggtt accagaatct
      841 tcattgcacg cccccgcttc ttgttatgcc ccgactctag cagccgaacc ccacgcccgg
      901 gtgttgcccg tgcggccaga acaacgacct tgcagcccag gatcaggtca ccagccaatc
      961 gccgacccgg cgctccagat ggcgagtcag gctggacagc agctcgccgc cgttgcgcca
     1021 gtgatgccag tacaacggca cgtccagcgg acgatccggc agcaactcga ccagctcgcc
     1081 gcgggccacc tgctcgcgca cctgcagctc cggcaccatg ccccagccga ggcctgcgca
     1141 ggtcagtcgc acgaaccctt cggacgacgg gcacaggtga tgggcgaagc cgccaccgac
     1201 gccgagcccg gcgaggaagc gatgctgcag ctggtcgtcg gcgccgaaca cgatcgacgg
     1261 cacccgcgcc agagtcgcgc cgtccacgcc atcggcgaag tggcgggtga cgaatgccgg
     1321 gctggccagc gcccggtagc gcatcgcccc cagcggcaat gcacgtgcgc ccgccaccgg
     1381 gcgctccgcg gcgcacacgc agccggccac ctcgccggcg cgcatgcgct tgaggccgac
     1441 gtcctggtca tccaccacat gatcgagcag caggcggtgc tcggcgacga agtcacccac
     1501 cagcggcgcc caccaggtcg ccaggctgtc ggcgttgagg gcgatacgca ggcgctcggc
     1561 cggctggtcc tcggccagcg cgggcacctg accctgcagg tcacgctcca gcaggcgcac
     1621 ctgctgcaca tggttgagca ggcggcgtcc gatctcggtt ggggccggcg gcgccgcgcg
     1681 cagcagcacc ggctgtccga cccgcgcctc gagcagcttg atgcgctgcg acaccgccga
     1741 ctgcgacaac cccagcagct gcgccgcacg ctcgaagccg ccctgctcca ccaccgcggc
     1801 cagggccgcc agcagcttgt agtcgaacat aagaatccct aatgagcgat cagcatgatt
     1861 ggtttttctt atacaggcga agcgcccaga ctgaccagca tcgcaaccgc cccaaggact
     1921 ccgccatgac cggcgaaacc gacctgagca ccctgctcgc cagcctctct ccgcgcctca
     1981 acccgggccg cttcgtgttc tgcagcgtgg cccagcccag cgtggtgcag atggccgccg
     2041 ctctcggcag cttccgcgaa accgagggca ccaccctgat cctcgcccgc gaggaggccg
     2101 accgcctggg cctggcctac gactacctgg ccgcctggat caccctggag gtgcattcct
     2161 cgctggccgc cgtcggcctc accgccgcgt tcgcccgcgt gttggccgac gagggcatca
     2221 gttgcaacgt gatcgccggc taccaccacg accacctgtt cgtcgccgag gccgatgccg
     2281 aacgtgcgct ggcggccctg cagcggctgg gcgcggagag ttgctgagat gtggcagagc
     2341 tacctcaacg gcctgctggt ggcggcaggg ctgatcgtcg ccatcggtgc gcagaatgcc
     2401 ttcgtcctgg cccagagcct gcgccgcgag caccacctgc cggtggccgc gctgtgtgtg
     2461 ctctgcgacg ccatcctggt cgccgccggc gtgttcggcc tggccacgct gctggcacag
     2521 agcccgatgc tgctcgccgt ggcgcgctgg ggcggcgccg cgttcctgct ctggctgggc
     2581 gtgcaggcgc tgcgccgggc cttccaaccg caggcgttgc agcagcgcga cagcggcccg
     2641 cgttcgcgcc gtgcggtgct gctggcggca ctggcggtga ccctgctcaa cccgcacgtg
     2701 tacctggaca ccgtgctgct gatcggctcc ctcggtgccc agcagccggt tcccggcgcc
     2761 tacgcgctgg gcgcggccag cgcgtcgctg atctggttct tcaccctggc cctgggcgcc
     2821 gcgtggctcg caccgtggct ggcgcgtccg gccacctggc gcgtgctcga cctggcggtg
     2881 gcggcgatga tgttcgcggt ggccgcgcaa ctggtgctgc gcgcacccgg cgcatgaccg
     2941 cgacggcgcc gcggcgtatg ctgcggcgct ctatcagatc gcggagggcg tcttggatac
     3001 gacggtgttc accgtggtga tggccgccgc cgcactgcac gcgggctgga acgccctgct
     3061 gaagatcggc ctggaccgct acctcaccgc ctcgctgatc cagatcggcg ccggcagcct
     3121 cgccctgctg gccctgccct tcttcgacgt accgctggcc tccgcttggc ccttcatcgg
     3181 cctctccgcg ctgctgcaca tcggctacaa catcttcctc tcacgcgcct accagcacgg
     3241 cgacctgtcc caggtctatc ctatcgcccg cggcagctcg ccgctgctgg tcgcgttgct
     3301 ggccgtgccg gccggcgacc tgctgccgcc cgggcaatgg gcggggctgc tggtgctggt
     3361 cgccggcatc tggctgatgg cctggcgtgg cggccacccc ggcacccggc tcaacggggc
     3421 gttgctgttc aatgccctgg cgacggcggt gtgcatcgcc ggctacaccc tggccgacgc
     3481 cctcggcgcg cgcagcaacg gcgatgccat cggctatgcg ctgtggctgt tcgtggtcaa
     3541 cggcctggtg gcgggcgtgg tcatcgccct gcgccgcggt ccgcgcatct tcctgcaact
     3601 cgggccgcac tggcgtggag gcctgggcgg cggcgccatg tcgatgctgg cctacagcct
     3661 ggtgatctgg gccgccaccc aggcgccggt cgccttggta tcggcgctgc gcgagaccag
     3721 cgtgctgttc gccctgctga tcggctggct attcctcaag gagcccatgc cgctgccacg
     3781 cctgctcgcc tgcgccgtga tcgtggccgg agtggtggcg atgaggtgcg tctagcgctg
     3841 tcgtcgcagt gccggaaaca gcgcacgcgg gtcgcacttc caggcctgct gcctgtccga
     3901 gccaacatga gcaaagccgc ctggcatcgg cttttccaca cagttgctgc gtggatatgg
     3961 cctgggtcga gtgctatgat cccggcctcg cggcacatta atagagtaaa actcgtcgcc
     4021 gcccgatttt ccggccgccc cgtgaacggc cacgtgcgaa tcgcacttat cccgacccga
     4081 tgaaggagat agaccatggc
//
LOCUS       DATIHC010000490         2133 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8422, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000490 DATIHC010000000
VERSION     DATIHC010000490.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2133
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8422"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1442)
                     /gene="thrS"
                     /locus_tag="VLF16_08040"
     CDS             complement(<1..1442)
                     /gene="thrS"
                     /locus_tag="VLF16_08040"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HSX70872.1"
                     /translation="MPTITLPDGSQRSFDRPVSVLEVAQSIGAGLAKATLAGKVNGRQ
                     VDACDLIESDATLQIITPKDEEGLEIIRHSCAHLVGHAVKQLYPNAKMVIGPVIEEGF
                     YYDIAIDRPFTPEDMAAIEKRMAELIDKDYDVIKKMTPRAEVIELFRARGEEYKLRLI
                     DDMPDEKAMGLYFHEEYVDMCRGPHVPNTRFLKSFKLTKISGAYWRGDSKNEQLQRIY
                     GTAWADKKQLAAYVQRIEEAEKRDHRRIGKQLDLFHLQEEAPGMVFWHPAGWTVYQVL
                     EQYMRQVQRESGYVEVRTPQVVDRILWERSGHWSNYAENMFTTSSENRDYAVKPMNCP
                     CHVQIFNQGLKSYRDLPLRMAEFGSCHRNEASGALHGIMRVRGFTQDDAHIFCTEEQV
                     KKEASDFIKLTLQVYADFGFTDIAMKLSTRPAKRVGSDELWDRAETALADALNESGLA
                     WEYQPGEGAFYGPKIEFTLKDCLGRNWQCGT"
     gene            complement(1668..1744)
                     /locus_tag="VLF16_08045"
     tRNA            complement(1668..1744)
                     /locus_tag="VLF16_08045"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1708..1710),aa:Val,seq:gac)
     gene            1930..>2133
                     /locus_tag="VLF16_08050"
     CDS             1930..>2133
                     /locus_tag="VLF16_08050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSX70873.1"
                     /translation="MAHTPYPQSYYAASANPVPQRPALQGETETDVCIIGAGYTGLST
                     ALFLLENGFKVTIVEAAKVGFGAS"
BASE COUNT          414 a          653 c          639 g          427 t
ORIGIN      
        1 gtgccgcact gccagttacg gccgaggcag tccttcagcg tgaactcgat cttcgggccg
       61 tagaaggcac cctcgcccgg ctgatattcc caggccaggc cggactcgtt cagcgcatcg
      121 gccagcgcgg tctcggcacg atcccacagc tcgtcggaac ctacgcgctt ggccggacgg
      181 gtggagagtt tcatggcgat atcggtgaaa ccgaagtcgg catacacctg cagggtcagc
      241 ttgatgaagt cggaggcttc cttcttcacc tgctcctcgg tgcagaaaat gtgcgcgtcg
      301 tcctgggtga agccgcgcac gcgcatgatg ccatgcagcg cgccggatgc ctcgttgcgg
      361 tggcaggagc cgaactcggc catgcgcagc ggcaggtcgc ggtaggactt cagaccctga
      421 ttgaagatct gcacgtggca cgggcagttc atcggcttca ccgcgtagtc gcgattttcc
      481 gacgaggtgg tgaacatgtt ctcggcgtag ttcgaccagt gccccgagcg ctcccagagg
      541 atgcgatcga ccacctgcgg cgtgcgcacc tcgacgtagc cgctctcgcg ctgcacctgg
      601 cgcatgtact gctcaagcac ctgatagacg gtccagccgg ccgggtgcca gaacaccatg
      661 cccggcgcct cttcctgcag atggaacaga tccagctgct tgccgatgcg gcgatggtcg
      721 cgcttctcgg cttcctcgat gcgctggacg taggccgcca gctgcttctt gtccgcccag
      781 gcggtgccat agatacgctg cagctgctcg ttcttcgagt cgccacgcca gtaggcaccg
      841 gaaatcttgg ttagcttgaa cgacttgagg aaacgggtat tcggcacatg cgggccgcgg
      901 cacatgtcga cgtactcctc gtggaagtac agacccatgg ccttctcgtc cggcatgtcg
      961 tcgatcaggc gcagtttgta ttcctcgcca cgcgcccgga acagctcgat gacctcggcg
     1021 cgcggcgtca tcttcttgat gacgtcgtag tccttgtcga tcagctcggc catgcgcttc
     1081 tcgatggccg ccatgtcttc gggcgtgaag ggacgatcga tagcgatgtc gtaatagaag
     1141 ccttcctcga tcaccggacc gatcaccatc ttggcgttcg ggtagagctg cttgaccgcg
     1201 tggccgacca ggtgggcaca ggagtggcga atgatttcca gcccctcttc gtccttcggc
     1261 gtaatgatct gcagggtcgc gtcgctctcg atcagatcgc aggcatccac ctgcctgcca
     1321 ttgaccttgc cggccagggt ggccttggcc agaccggcac cgatggactg agccacctcg
     1381 agcacggaca cgggacgatc gaacgaacgc tgactgccgt caggaagagt aatggtgggc
     1441 atggcgcctc ctctcctagt ggtgacccct accaaaggtc acatgggttg ggatgagcca
     1501 ggaagcgatc cagaggtgta cctgcctgac gatggcagga gccttgcggc caaccggagc
     1561 cggaccagag tcactggaag taaacgagcc gggaatgctt tcagaaagcc ggagccctga
     1621 caagcagcca ataaaaaagg ggtcgtatga acgacccctt tcggatttgg taggcacaat
     1681 tggactcgaa ccaacgaccc ccaccatgtc aaggtggtgc tctaaccaac tgagctatgt
     1741 gcctgcaatg gaggcgcatt ttagggagat tcgtttggct gtcaacatat tttttcgcta
     1801 agcctctgaa aaagtggatt ttttggcgca cagcgggacg ttgtaaattt tgcacagagg
     1861 ctagccggcg gattccggct cgggtagcat ccgcccagtc cgtaaaaaat aaagaacata
     1921 ggttcaaata tggcgcacac accctatccc cagtcctact acgccgcctc ggccaatccg
     1981 gtgccgcagc gcccggcact gcagggtgag accgagaccg atgtctgcat catcggcgct
     2041 ggctataccg gcctctccac cgccctgttc ctgctggaga acggcttcaa ggtcaccatc
     2101 gtcgaagccg ccaaggtcgg cttcggcgcc tcc
//
LOCUS       DATIHC010000491         2310 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_20014, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000491 DATIHC010000000
VERSION     DATIHC010000491.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2310)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2310)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2310
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20014"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..162)
                     /locus_tag="VLF16_08055"
     CDS             complement(<1..162)
                     /locus_tag="VLF16_08055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSX70874.1"
                     /translation="MSYDFDLFVIGAGSGGVRAARFAAGFGAKVAVAESRYLGGTCVN
                     VGCVPKKLLV"
     gene            257..679
                     /locus_tag="VLF16_08060"
     CDS             257..679
                     /locus_tag="VLF16_08060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSX70875.1"
                     /translation="MRPTLTHIALHVPQLQPCVDFYREFCGMQVIHERAGKGSKIVWM
                     AEPGKEHDFIFVIMPGGIDRKLASDDYSHFGFALESREAVDAIAARAAERGCLIWPPR
                     DEPYPVGYYCGLRDPAGHYVEFSYGQPLGPGSEAMPIP"
     gene            complement(726..1565)
                     /gene="galU"
                     /locus_tag="VLF16_08065"
     CDS             complement(726..1565)
                     /gene="galU"
                     /locus_tag="VLF16_08065"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003983 - UTP:glucose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009225 - nucleotide-sugar metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HSX70876.1"
                     /translation="MIKKCLFPAAGYGTRFLPATKAMPKEMLPVVNKPLIQYGVEEAL
                     EAGLSEIAMVTGRGKRALEDHFDISYELEHQIQGTDKEKYLVGIRRLIDECTFSYTRQ
                     IEMKGLGHAILSGRPLIGDEPFAVVLADDLCFNLEGDGVLQQMVKLYNQFRCSIVAIQ
                     EVPPEETSKYGVIAGEMIRDDIFRVNNMVEKPKPEDAPSNLAIIGRYILTPDIFDLIE
                     KTEPGKGGEIQITDALMKQARDGCVIAYKFKGKRFDCGGAEGYIEATNFCYENLYKTG
                     KAY"
     gene            complement(1719..>2310)
                     /locus_tag="VLF16_08070"
     CDS             complement(1719..>2310)
                     /locus_tag="VLF16_08070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020290163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HSX70877.1"
                     /translation="GRNGSTFANLGGGAKYYFTENFYARAGVEAQYNIDQGDTEWAPS
                     VGIGLNFGGGSKPAPVAEPVAEVVQEEVAPTPEPAENVRVELDVKFDFDKSVVKEESY
                     GDIKNLADFMNQYPQTNTTVEGHTDSVGTDAYNQKLSERRANAVREVLVNQYGVGSER
                     VGSVGYGESQPVADNATEAGRAVNRRVEAEVEAQAQ"
BASE COUNT          392 a          746 c          726 g          446 t
ORIGIN      
        1 gaccagcagc ttcttcggca cacagccgac gttgacacag gtacccccca gatagcggct
       61 ctcggccacc gccaccttgg cgccgaagcc cgcggcgaaa cgggcggcac gcacgccgcc
      121 ggaaccggcg ccgattacga acaggtcgaa gtcataggac atggcagttc tccttgcagg
      181 cgcccagcat accggagagc tcgccgccct gcgtgtatgc tcgccctgct ccacgatcga
      241 aaccgggagg tccctcatgc gccccaccct cacccacatc gccctgcacg tgccgcaact
      301 gcagccctgc gtggacttct atcgcgagtt ctgcggcatg caggtgatcc acgaacgcgc
      361 cggcaagggc tcgaagatcg tctggatggc cgagccgggc aaggagcatg acttcatctt
      421 cgtgatcatg ccgggcggca tcgaccggaa actggccagc gacgattaca gccatttcgg
      481 cttcgccctg gagagtcgcg aggccgtcga tgcgatcgcc gcccgcgccg ccgagcgcgg
      541 ctgcctgatc tggccgccac gcgacgagcc ctatccggtc ggttactact gcggcctgcg
      601 cgatccggcc ggccactacg tcgagttcag ctacggccag ccgctggggc cgggctcgga
      661 ggcgatgccc attccctgag aacgaaaaag ccacccgaag gtggctcttt ctggcggcag
      721 gccgatcagt aggccttgcc ggtcttgtac aggttctcgt agcagaagtt ggtggcctcg
      781 atgtagccct cggcgccacc gcagtcgaag cgcttgccct tgaacttgta ggcgatcacg
      841 cagccgtcgc gggcctgctt catcagcgcg tcggtgatct ggatctcgcc acccttgccc
      901 ggctcggtct tctcgatcag gtcgaagata tccggagtca ggatgtagcg gccgatgatc
      961 gccaggttcg atggcgcatc ttccggcttc ggcttctcga ccatgttgtt cacgcggaag
     1021 atgtcgtcgc ggatcatctc gccggcgatc acgccgtact tggaagtctc ttccggcggc
     1081 acttcctgga tggccacgat cgagcagcgg aactggttgt acagcttgac catctgctgc
     1141 agcacgccgt caccttcgag gttgaagcac aggtcgtcgg ccagcaccac ggcgaacggc
     1201 tcgtcgccga tcagcgggcg accgctgagg atggcgtggc ccaggccctt catctcgatc
     1261 tggcgggtgt aggagaaggt gcactcgtcg atcaggcgac ggatgccgac caggtacttc
     1321 tccttgtcgg taccctggat ctggtgctcc agctcgtagc tgatgtcgaa atggtcttcc
     1381 agggcgcgct tgccgcggcc ggtcaccatg gcgatttcgc tcagccccgc ctcgagggct
     1441 tcctcgacgc cgtactggat caacggcttg ttgaccacgg gcagcatttc cttgggcatg
     1501 gccttggtgg ccggtaggaa gcgggtgcca taaccggcag ccgggaacag acatttcttg
     1561 atcatgacaa tccttggtac tgcgaaacgg gtctgccgcg cagtctaaac acgcgaccgc
     1621 ggccttacaa tgcgaggggg caacgcccag gcggtccggg ccctccgcga atacaaaaaa
     1681 cccggccgag gccgggtttt tcgtcactca gcgcccgatt actgggcctg ggcttccact
     1741 tcggcttcta cgcgacggtt gacggcgcga ccggcttcgg tggcgttgtc ggcaaccggc
     1801 tgggactcgc cgtaaccgac ggagcctacg cgctcggaac ctacaccgta ctggttgacc
     1861 agcacttcgc gaacggcgtt ggcacgacgc tcggacagct tctggttgta ggcgtcggta
     1921 ccgacggagt cggtgtggcc ttcaacggtg gtgttggtct gcgggtactg gttcatgaag
     1981 tcggccaggt tcttgatgtc accgtagctt tcttccttga ccaccgactt gtcgaagtcg
     2041 aatttcacgt ccagctcgac gcgaacgttc tcggcgggtt ccggagtcgg agccacttct
     2101 tcctgaacga cttcggcaac cggctcggcg accggggccg gcttggagcc gccgccgaag
     2161 ttcaggccga taccaacgct cggggcccac tcggtgtcgc cctgatcgat gttgtactga
     2221 gcttcaacac cggcgcgggc gtagaagttc tcggtgaagt agtacttggc gccgccgccc
     2281 aggttggcga aggtggaacc gttacgaccg
//
LOCUS       DATIHC010000492         1795 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8424, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000492 DATIHC010000000
VERSION     DATIHC010000492.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1795)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1795)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1795
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8424"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(31..>1795)
                     /locus_tag="VLF16_08075"
     CDS             complement(31..>1795)
                     /locus_tag="VLF16_08075"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015477293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HSX70878.1"
                     /translation="RFPYPSFRRGQRQLAESVYRAARDGDFLLAQATTGIGKTLATLF
                     PQLKAFPGKALDRLFFLTAKTPGRRLALDALASLREQEQNMPLRVLEHVARDKACEHP
                     DKACHGESCPLARGFYDRLPAARAAALERRWLTQEAVREIALAHQVCPYYLSQELCRW
                     SDVVVGDYNYYFDMTALLHGLTVLNGWKVTLLVDEAHNLIDRARGMYSAELDQAEFNA
                     LRKVAPAGLKGVLERVGRHWNQLHRDQEVPYQIYPAIADLFILALQKAVSAITDHLTD
                     QPEGNQAALLRFYLDAMLFCRLAEAFGPHSLFDITRHDTRAGRSLSTLCLRNIVPARF
                     LAERFANAHSATLFSATLSPGHYHADLLGLPRDWQWLEVQSPFGAEQLRVQALANLST
                     RYQHRDASLAPISDLVARQFRQQPGNYLAFFSSYAYLEQALDNFRREHPDIPVWEQSR
                     SMSEAERQAFLERFTEHSRGIGFAVLGGAFGEGIDLPGKRLIGAFIATLGLPQVNPVN
                     EEMKARMQQMFGNGYDYAYLFPGLQKVVQAAGRVIRTTEDQGVVYLLDDRFTRGEVRQ
                     LLPAWWQVERSRYQPDREPVA"
BASE COUNT          258 a          553 c          703 g          281 t
ORIGIN      
        1 ccctacgagg cggcgcccgg ttcgcgcgcc ttacgccacc ggctcccggt ccggctgata
       61 gcggctgcgt tcgacctgcc accaggccgg cagcagctgg cgcacctcgc cacgggtgaa
      121 gcggtcgtcg agcaggtaga ccacgccctg gtcttcggtg gtgcggatca cccggccggc
      181 cgcctggacc accttttgca ggccggggaa caggtaggcg tagtcgtagc cattgccgaa
      241 catctgctgc atgcgcgcct tcatttcctc attgaccggg ttgacctgcg gcaggccgag
      301 ggtggcgatg aaggcgccga tcagccgctt gccgggcagg tcgatgcctt cgccgaaggc
      361 gccgccgagc acggcgaagc cgatgccgcg ggagtgctcg gtgaagcgct cgagaaaggc
      421 ctggcgctcg gcctcgctca tgctgcgcga ctgttcccag acggggatgt ccgggtgctc
      481 gcggcggaag ttgtccaggg cttgttccaa gtaggcgtag ctgctgaaga aggccaggta
      541 attgcccggc tgctggcgga actggcgggc caccaggtcg ctgatggggg ccaggctggc
      601 gtcgcggtgc tggtagcggg tggacaggtt ggccagcgcc tggaccctga gctgctcggc
      661 gccgaacggc gactgcacct ccagccactg ccagtcgcgc ggcaggccga gcaggtcggc
      721 gtggtagtgg ccggggctga gggtggcgga gaacagcgtg gcgctgtggg cgttggcgaa
      781 acgctcggcg aggaagcgcg ccggcacgat gttgcgcagg cacagcgtcg acaggctgcg
      841 gccggcccgc gtgtcgtggc gggtgatgtc gaacagcgag tgcgggccga aggcctcggc
      901 caggcggcag aacagcatgg cgtcgaggta gaagcgcagc agcgcggcct ggttgccctc
      961 gggctggtcg gtgaggtggt cggtgatggc gctcaccgcc ttctgcaggg ccaggatgaa
     1021 caggtcggcg atggccgggt agatctggta cggcacttcc tggtcgcggt gcagctggtt
     1081 ccagtgccgg ccgacgcgct ccagcacgcc cttgagaccg gccggggcga ccttgcgcag
     1141 ggcgttgaat tcggcctggt ccagttcggc gctgtacatg ccgcgcgcgc ggtcgatcag
     1201 gttgtgcgcc tcgtccacca gcagggtgac cttccagccg ttgagcacgg tgagcccgtg
     1261 caggagggcg gtcatgtcga agtagtagtt gtagtcgccg accaccacgt cgctccagcg
     1321 acacagttcc tgggacaggt agtaggggca gacctggtgc gccagggcga tctcgcgcac
     1381 ggcctcctgg gtcagccaac ggcgctcgag ggcggcggcg cgggcggccg gcaggcggtc
     1441 gtagaagccc cgggccagcg ggcaggattc gccgtggcag gccttgtccg ggtgttcgca
     1501 ggccttgtcg cgggccacgt gctccagcac ccgcagcggc atgttttgct cctgctcgcg
     1561 caggctggcc agcgcgtcga gcgccaggcg ccggcccggg gtcttggcgg tgaggaagaa
     1621 caggcggtcc agcgccttgc cgggaaaggc cttgagctgg gggaacaggg tggccagggt
     1681 cttgccgata ccggtggtgg cctgggccag caggaagtcg ccgtcgcggg cggcgcggta
     1741 cacggattcg gcgagctggc gctggccacg gcggaagctc gggtagggga aacgc
//
LOCUS       DATIHC010000493        11072 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_38021, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000493 DATIHC010000000
VERSION     DATIHC010000493.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 11072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11072
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38021"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..916)
                     /gene="sucC"
                     /locus_tag="VLF16_08080"
     CDS             complement(<1..916)
                     /gene="sucC"
                     /locus_tag="VLF16_08080"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HSX70879.1"
                     /translation="MNLHEYQGKQLFAEYGLPVSKGFAVDTPEEAAEACDKIGGSEWV
                     VKAQVHAGGRGKAGGVKLVKNKEDAKAFAANWLGKRLVTYQTDANGQPVSKILVESCT
                     DIDKELYLGAVVDRSSRRIVFMASTEGGVDIEKVAHETPEKILKATIDPLVGAQPYQG
                     RELAFKLGLQGDQIKQFTHIFVNLAKLFQDFDLALLEVNPLVIKKDGNLHCLDAKINI
                     DSNAMYRQPKLRAMHDPSQDDAREAHAQKWELNYVALEGNIGCMVNGAGLAMGTMDIV
                     NLHGGKPANFLDVGGGATKERVTEAFKII"
     gene            complement(1105..2541)
                     /gene="lpdA"
                     /locus_tag="VLF16_08085"
     CDS             complement(1105..2541)
                     /gene="lpdA"
                     /locus_tag="VLF16_08085"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA];
                     GO_process: GO:0051068 - dihydrolipoamide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HSX70880.1"
                     /translation="MTQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEKYQDKDGKVA
                     LGGTCLNVGCIPSKALLDSSYKYHEAHEGFKVHGIEATGVTIDVPQMVARKNTIIKNL
                     TGGVAGLFKSNGVTLLEGHGKLLAGKKVEVTGLDGSTQVVEADNVILASGSRPVDIPP
                     APVDQDVIVDSTGALEFQAVPKKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLA
                     SADEQISKEALKILGKQGLDIRLGARVTGSEVKDKQVTVTFSDATGEQKLTFDKLIVA
                     VGRRPVTTDLLAADSGVTLDERGFIYVDDQCETSVPGVYAIGDVVRGAMLAHKASEEG
                     VMVAERIKGHKAQMNYDLIPSVIYTHPEIAWVGKTEQQLKAEGVEINVGTFPFAASGR
                     AMAANDTAGLVKVIADAKSDRVLGVHVIGPSAAELVQQGAIGMEFGTSSEDLGMMVFS
                     HPTLSEALHEAALAVNGHAIHIANRKKR"
     gene            complement(2611..3831)
                     /gene="odhB"
                     /locus_tag="VLF16_08090"
     CDS             complement(2611..3831)
                     /gene="odhB"
                     /locus_tag="VLF16_08090"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045252 - oxoglutarate dehydrogenase
                     complex [Evidence IEA];
                     GO_function: GO:0004149 - dihydrolipoyllysine-residue
                     succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HSX70881.1"
                     /translation="MAIEIKAPTFPESVADGTVATWHKKPGDAVKRDELIVDIETDKV
                     VMEVLAEADGVLAEIVKNEGDTVLSGELLGKLGDAGAAVAAPAAAPAAAAPAAAAPAA
                     AADDDAILSPAARKIAEEGGIDPNSITGTGKGGRVTKEDAVAAVAAKKSAPAAAAKQA
                     APAAEAPVFAAGDRVEKRVPMTRLRAKVAERLVEAQSTMAMLTTFNEVDMHEVMALRS
                     KYKDLFEKTHNGVRLGFMSFFVKAAVEALKRFPAVNASIDGNDIVYHGYQDIGVAVSS
                     DRGLVVPVLRNAELMSLAEVENGIATFGKKARDGKLSIEEMTGGTFTITNGGTFGSMM
                     STPIVNPPQAAILGMHNIIQRPVAINGQVVIRPMMYLALSYDHRLIDGKEAVSFLVTI
                     KNLLEDPARLLLDI"
     gene            complement(3905..6736)
                     /locus_tag="VLF16_08095"
     CDS             complement(3905..6736)
                     /locus_tag="VLF16_08095"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004591 - oxoglutarate dehydrogenase
                     (succinyl-transferring) activity [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HSX70882.1"
                     /translation="MQESVMQRMWESAHLSGGNAAYVEELYELYLHDPNAVPEEWRTY
                     FQKLPADGNAATDVSHSTVRDHFVLLAKNQRRAQPVSAGSVSSEHEKKQVEVLRLIQA
                     YRMRGHQASALDPLGLWQRPAPADLAVNHYGLTNADLDTTFRTGELYIGKEEATLREI
                     HEALQQTYCRTIGAEFTHIVDSEQRKWFQQRLESVRGRPAYSAEVQGHLLERLTAAEG
                     LEKYLGTKYPGTKRFGLEGGESLIPLLDEIIQRSGSYGAQEIVIGMAHRGRLNVLVNT
                     FGKNPRDLFDEFEGKQVEGLSSGDVKYHQGFSSNVMTAGGEVHLALAFNPSHLEIVSP
                     VVEGSVRARQDRRNDSTGDKVLPISIHGDAAFAGQGVVMETFQMSQTRAYKTGGTIHI
                     VINNQVGFTTSRADDARSTEYATDVAKMIQAPILHVNGDDPEAVLFVTQLAVDYRMQF
                     KRDVVIDLICYRRRGHNEADEPSGTQPLMYQQIAKQRTTRELYAESLVQAGRVANDAV
                     TARIEEYRSALDNGQHVVKSLVKEPNKELFVDWKPYLGHAWTARHDTRFELKTLQDLA
                     SKLLETPEGFVLQRQVSKVLEDRAKMTAGAMPINWGYAENLAYATLLFEGHPVRMTGQ
                     DVGRGTFSHRHAALHNQKDATTYLPLQNLYEGQPRFQLYDSFLSEEAVLAFEYGYSTT
                     MPNALVIWEAQFGDFANGAQVVFDQFISSGEHKWGRLCGLTMLLPHGYEGQGPEHSSA
                     RLERYLQLCAEHNMQVCVPTTPAQVYHMLRRQVIRPLRKPLVVLTPKSLLRHPLAIST
                     LEELAEGSFQTVIGEIDQIDPQKVERVVLCSGKVYYDLLAKRRAEGREDIAVVRIEQL
                     YPFPEDDLTEALAPYKNLKHIVWCQEEPMNQGAWYCSQHHMRRVASAHNKELFLQYAG
                     RDASAAPACGYASMHAEQQEKLLNDAFTV"
     gene            complement(6981..7700)
                     /locus_tag="VLF16_08100"
     CDS             complement(6981..7700)
                     /locus_tag="VLF16_08100"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013791587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008177 - succinate dehydrogenase
                     (ubiquinone) activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HSX70883.1"
                     /translation="MSLGNTLQVSVYRYNPEKDAAPFMQDFTVQIDGKDLMVLDVLAL
                     IKEQDEGFSYRRSCREGVCGSDGMNISGKNGLACITPISTVVKGDKLVIRPLPGLPVI
                     RDLVVDMSIFYKQYEKVQPFLQNDTPAPAIERLQSPEEREKLDGLYECILCACCSTSC
                     PSFWWNPDKFLGPAALLQAYRFLADSRDTKTAERLASLDDPFSVFRCRGIMNCVNVCP
                     KGLNPTKAIGHVRNMLLQSGT"
     gene            complement(7712..9487)
                     /gene="sdhA"
                     /locus_tag="VLF16_08105"
     CDS             complement(7712..9487)
                     /gene="sdhA"
                     /locus_tag="VLF16_08105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HSX70884.1"
                     /translation="MASIRTLSYDAIIVGGGGAGMRAALQLAQGGHKTAVVTKVFPTR
                     SHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVFELE
                     HMGLPFSRTEQGRIYQRPFGGQSKGPDNPSVQAARTCAAADRTGHALLHTLYQANLKA
                     GTSFLNEWYAVDLVKNQDGAIVGIIAICIETGETVYIRSKAVVLATGGAGRIYASTTN
                     ALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGAGVLVTEGCRGEGGYLINAHGERF
                     MERYAPNAKDLAGRDVVARSMVKEVIAGNGCGPDKDHVLLKLDHLGEEVLHSRLPGIC
                     ELSKTFAHVDPVLAPVPVIPTCHYMMGGVATNIHGQAITQDINGNDKIIEGLFAVGEV
                     ACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALKEGVEVRGASETDIEASLKRLSGV
                     NERSTGEDVAPLRKELQQCMQNYFGVFRTGEYMKKGIAQLADLRQRIANVKIADKSQA
                     FNTARIEALELQNLLEVAEATAIAADTRTESRGAHAREDYEDRDDENWLCHSLYFPGE
                     KRVSKRAVNFAPKTVPAFEPKVRTY"
     gene            complement(9491..9859)
                     /gene="sdhD"
                     /locus_tag="VLF16_08110"
     CDS             complement(9491..9859)
                     /gene="sdhD"
                     /locus_tag="VLF16_08110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003240851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045282 - plasma membrane succinate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, hydrophobic membrane
                     anchor protein"
                     /protein_id="HSX70885.1"
                     /translation="MVTNVTNFSRSGLYDWMVQRVSAVVLAAYFLFLIGYMVVNPGIG
                     YAEWHGLFSHTAMRIFSLLALVALIVHAWVGMWTITTDYLTPMAIGRWATGVRFLVQA
                     ACGVLQFVVFVWGVQILWGF"
     gene            complement(9853..10239)
                     /gene="sdhC"
                     /locus_tag="VLF16_08115"
     CDS             complement(9853..10239)
                     /gene="sdhC"
                     /locus_tag="VLF16_08115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045282 - plasma membrane succinate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, cytochrome b556
                     subunit"
                     /protein_id="HSX70886.1"
                     /translation="MKKAVNSQRPVNLDLRTIKLPITAYTSILHRISGVILFLGIVIV
                     LFALDKSLASEEGFAEVQAYLASPLAKLIIWGLLSALLYHLVAGVRHLIMDMGFGESL
                     EGGKLGSKIVIAVSVVVIVLAGVWVW"
     gene            10591..>11072
                     /locus_tag="VLF16_08120"
     CDS             10591..>11072
                     /locus_tag="VLF16_08120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/2-methylcitrate synthase"
                     /protein_id="HSX70887.1"
                     /translation="MADKKAQLIIEGNAPVELPVLTGTVGPDVVDVRGLTATGRFTFD
                     PGFMSTASCESKITYIDGDAGVLLHRGYPIEQLAENSDYLETCYLLLNGELPNAEEKA
                     KFVSTIKNHTMVHEQLKNFFNGFRRDAHPMAIMCGVVGALSAFYHDSLDINNPHHREV
                     S"
BASE COUNT         1915 a         3381 c         3604 g         2172 t
ORIGIN      
        1 ggatgatctt gaaggcctcg gtcacgcgct ctttggtagc gccgccgccg acgtcgagga
       61 agttggccgg cttgccgccg tgcaggttga cgatgtccat ggtgcccatg gccaggccgg
      121 caccgttgac catgcaaccg atgttgcctt ccagcgcgac gtagttcagt tcccacttct
      181 gcgcatgggc ttcacgagcg tcgtcctggg acgggtcgtg catggcgcgc agcttgggct
      241 gacggtacat ggcgttggag tcgatgttga tcttggcgtc caggcagtgc aggttgccgt
      301 ccttcttgat caccagcggg ttcacttcca gcagggccag atcgaaatcc tggaacagct
      361 tggccaggtt gacgaagatg tgggtgaact gcttgatctg gtcgccctgc aggcccagtt
      421 tgaaggccag ctcgcggccc tggtacggct gagcgccgac cagcgggtcg atggtggcct
      481 tgaggatctt ctcgggagtc tcgtgggcga ctttctcgat gtccacgcca ccttcggtgg
      541 aggccatgaa cacgatgcga cggctggagc ggtcgacgac ggcgccgagg tacagctcct
      601 tgtcgatgtc ggtgcaggac tcgaccagga tcttgctgac cggctgaccg ttggcgtctg
      661 tctggtaggt caccagacgc ttgcccagcc agttggcggc gaaggccttg gcgtcttcct
      721 tgttcttgac cagctttaca ccaccggcct taccgcggcc accggcgtgc acctgggctt
      781 tgacaaccca ctcgctgcca ccgatcttgt cgcaggcttc ggctgcttct tccggcgtgt
      841 cgacggcaaa gcccttggat acaggcaggc cgtactcagc gaacagctgc ttaccctgat
      901 actcgtgaag attcatgctt atctaccgtt cttcgtttag gtattgcgca tttcggcgct
      961 gcgctcgggg cgccgcacca cctgtgactg cactggttag cagtccgacg gacattcctg
     1021 cgacgggtcg tcgcgaaccg ccacgggccg tccgccgtgg ttttttcggg ttaggcgccc
     1081 cggctcgcga ggcgcctgca cgcatcagcg cttcttgcga ttggcgatgt ggatggcgtg
     1141 gccattcacc gccagggccg cttcgtgaag cgcttcggac agggtcgggt gcgagaacac
     1201 catcatgccc aggtcttcgg agctggtgcc gaattccatg ccgatggcgc cctgctggac
     1261 cagctcggcc gcgctcgggc cgatcacgtg gacgcccagt acgcggtcgc tcttggcatc
     1321 ggcgatgacc ttgaccaggc cggcggtatc gttggcagcc atggcgcggc cgctggcagc
     1381 gaacgggaag gtgccgacgt tgatctcgac gccctcggcc ttgagctgct gctcggtctt
     1441 gccgacccag gcgatttccg ggtgtgtgta gatgaccgac gggatcaggt cgtagttcat
     1501 ctgggccttg tggcccttga tgcgctcggc gaccatcacg ccctcttccg aggccttgtg
     1561 cgccagcatg gcgccgcgca ccacgtcacc gatggcgtag acgcccggga cgctggtttc
     1621 gcactggtcg tcgacgtaga tgaagccacg ctcgtccagg gtcacgccgc tgtcggcggc
     1681 cagcaggtcg gtggtcaccg ggcgacggcc gacggcgacg atcagcttgt cgaaggtcag
     1741 cttctgctcg ccggtggcgt cgctgaaggt cacggtgacc tgcttgtcct tcacttcgct
     1801 gccggtcacg cgggcaccca gacggatgtc cagaccctgc ttgccgagga tcttcagggc
     1861 ttccttggag atctgctcgt cggcggaagc gaggaacttg tccatggcct ccagcacggt
     1921 cacttcggcg cccaggcggg cccagacgga acccagctcc agaccgatga cgccggcgcc
     1981 gatcacgccc agcttcttcg gcacggcctg gaattccagg gcgccggtgg agtcgacgat
     2041 cacgtcctga tcgaccgggg ccggcggaat gtccaccggg cgggagccgg aagcgaggat
     2101 cacgttgtcg gcctcgacga cctgggtgct accgtccagg ccggtgactt cgaccttctt
     2161 gccagccagc agcttgccgt ggccttccag cagggtgacg ccgttggact tgaacaggcc
     2221 ggcgacgccg ccggtcaggt tcttgatgat ggtgttcttg cgcgcgacca tctgcggtac
     2281 gtcgatggtg acgcccgtgg cttcgatgcc atggactttg aagccttcgt gggcctcatg
     2341 gtacttgtag gagctgtcca gcagcgcctt cgacggaatg cagccgacgt tcaggcaggt
     2401 gccgcccagg gcgaccttgc cgtccttgtc ctggtacttc tcgatgcagg cggtcttcag
     2461 accgagttgc gcggccttga tggcggccac gtagcccccc gggcccgcgc caatcactac
     2521 cacgtcgaat ttctgggtca taactcattc cttctcgaat aaaaccgggt ggctccttgt
     2581 gagagccacc gcgttgcaca gccgctcgga tcagatgtcc agcagcaggc gagccgggtc
     2641 ttccagcaga ttcttgatgg tgaccaggaa gctgaccgct tccttgccgt cgatcagacg
     2701 gtgatcgtag gacagcgcca ggtacatcat cgggcggatc acgacctggc cgttgatggc
     2761 caccggacgc tggatgatgt tgtgcatgcc gaggatggcg gcctgcggcg ggttgacgat
     2821 cggggtcgac atcatcgaac cgaaggtgcc gccgttggtg atggtgaagg tgccgccggt
     2881 catctcttcg atggacagct tgccgtcgcg agccttcttg ccgaaggtgg cgatgccgtt
     2941 ctcgacttcg gccaggctca tcagctcggc gttgcgcagc accggaacca ccaggccacg
     3001 gtcgctggat acggccacgc cgatgtcctg gtagccgtgg tagacgatgt cgttgccgtc
     3061 gatggaggca ttgaccgccg ggaagcgctt cagcgcctcg acggccgcct tgacgaagaa
     3121 ggacatgaag cccaggcgca cgccgttgtg ggtcttctcg aacaggtcct tgtacttgct
     3181 gcgcagggcc atgacttcgt gcatgtccac ttcgttgaag gtggtcagca tggccatggt
     3241 ggactgggct tcgaccagac gctcggcgac cttggcgcgc aggcgggtca tcggcacgcg
     3301 cttctcgacg cggtcgccag cggcgaacac cggagcctcg gcggccggag cggcctgctt
     3361 ggcggcagcg gccggagcgg acttcttggc ggcgacggcg gcgacggcgt cttccttggt
     3421 cacgcgacca cctttgccgg tgccggtgat gctgttcgga tcgataccgc cttcttcggc
     3481 gatcttgcgc gcggccggcg acaggatggc gtcgtcatcg gcggcggcag ccggagcggc
     3541 agcagcaggt gcggcggcag ccggggcagc ggccggggcg gcaacggcag cgccggcgtc
     3601 acccagtttg cccagcagtt cgccggagag gacggtgtcg ccctcgttct tgacgatttc
     3661 ggcgagtacg ccgtcggctt cggcgaggac ttccatcacc accttgtcgg tttcgatgtc
     3721 gacgatcagc tcatcgcgct tgaccgcatc gcccggcttc ttgtgccagg tggccacggt
     3781 gccgtcggca accgattccg ggaaggttgg ggctttgatc tcgatagcca ttgtgtgtgt
     3841 ttccttaaat tcggtttctt cttagaggca gcggcccgtg ccgccgcctc cgtgcacgaa
     3901 ggcgttagac agtaaaggcg tcgttcagca gtttttcctg ctgttcggcg tgcatcgatg
     3961 cgtaaccaca ggccggagcg gccgaggcat cgcggccggc gtactgaagg aagagctcct
     4021 tgttgtgcgc ggaagcgaca cgacgcatgt ggtgctggct gcagtaccag gcgccctggt
     4081 tcatcggctc ttcctgacac cagacgatgt gcttgaggtt cttgtacggc gccagcgctt
     4141 cggtgaggtc gtcttccggg aacggataga gctgctcgat acgcacgacg gcgatgtcct
     4201 cacgaccctc ggcacggcgc ttggccagca ggtcgtagta caccttgccg ctgcacagga
     4261 ccacgcgctc gaccttctgc gggtcgatct gatcgatctc gccgatgacg gtctggaacg
     4321 agccttcggc cagttcttcc agggtcgaga tggccagcgg atggcgcagc agcgacttgg
     4381 gcgtcagtac caccagcggc ttgcgcagcg ggcggatcac ctgacgacgc agcatgtggt
     4441 agacctgcgc cggggtagtc ggtacgcaca cctgcatgtt gtgctcggcg cacagctgca
     4501 gatagcgttc cagacgcgcg gagctgtgct ccgggccctg cccttcatag ccgtgcggta
     4561 gcagcatggt caggccgcac agacggcccc acttgtgctc gccgctggaa atgaactggt
     4621 cgaacaccac ctgggcgccg ttggcgaagt cgccgaactg ggcttcccag atcaccagcg
     4681 cgttgggcat ggtggtggag tagccgtatt cgaacgccag caccgcctct tccgagagga
     4741 aggagtcgta cagctggaag cgcggctgac cctcatagag gttctgcagc ggcaggtagg
     4801 tggtcgcgtc cttctggttg tgcagcgccg cgtggcggtg cgagaaggtg ccgcggccga
     4861 cgtcctggcc ggtcatgcgt accgggtggc cttcgaacag cagggtggcg taggccaggt
     4921 tctcggcgta gccccagttg atcggcatgg cgccggcggt catcttggcg cggtcttcca
     4981 gcaccttgga gacctggcgc tgcagtacga agccttccgg ggtctccagc agcttgctgg
     5041 cgaggtcctg cagggtcttc agctcgaagc gggtgtcgtg gcgcgcggtc caggcgtggc
     5101 ccaggtacgg cttccagtcg acgaacagtt ccttgttcgg ctccttgacc aggctcttga
     5161 ccacgtgctg gccgttatcc agcgcgctgc ggtattcctc gatgcgggca gtgaccgcgt
     5221 cgttggcaac acggccggcc tgtaccaggc tctcggcata cagctcgcgg gtggtgcgct
     5281 gcttggcgat ctgctggtac atcagcggct gggtgccgct cggctcgtcg gcctcgttgt
     5341 ggccgcggcg gcggtagcag atcaggtcga tgaccacgtc acgcttgaac tgcatgcggt
     5401 agtcgacggc cagctgggtg acgaacagca ccgcttccgg gtcgtcgcca ttcacgtgca
     5461 ggatcggcgc ctggatcatc ttggcgacgt cggtggcgta ctcggtcgaa cgcgcgtcgt
     5521 cggcacggct ggtggtgaag ccaacctggt tgttgatcac gatgtggatg gtgccgcccg
     5581 tcttgtaggc acgggtctgc gacatctgga aggtttccat gaccacgccc tgaccggcga
     5641 acgccgcgtc accgtggatg gaaatcggca gcaccttgtc accggtcgag tcgttgcggc
     5701 gatcctgacg ggcgcgcacc gaaccttcga ccaccgggga gacgatctcc aggtgcgaag
     5761 ggttgaatgc cagcgccagg tgcacttcac cgcccgcggt catgacgttg gaggagaagc
     5821 cctggtggta cttcacgtcg ccggaggaca gaccctcgac ctgcttgcct tcgaactcgt
     5881 cgaacaggtc gcgcgggttc ttgccgaagg tgttgaccag cacgttcaga cggccgcggt
     5941 gggccatgcc gatgacgatt tcctgggcgc cgtacgagcc ggagcgctgg atgatctcgt
     6001 ccagcagcgg aatcaggctt tcgccgcctt ccagaccgaa gcgcttggtg cccgggtact
     6061 tggtgcccag gtacttttcc agaccctcgg ccgccgtcag gcgctcgagc aggtggccct
     6121 gcacctcggc cgaataggcc gggcggccgc gcacgctttc caggcgctgc tggaaccact
     6181 tgcgctgctc ggaatcgacg atgtgggtga actcggcacc gatggtgcga caatatgtct
     6241 gctgcagcgc ctcgtggatt tctcgtagag tcgcctcctc cttgccgatg taaagctcac
     6301 cggtacggaa ggtggtgtcg aggtcggcgt tggtcagacc atagtggttg accgccagat
     6361 cggccggcgc aggacgctgc cacagaccca gcgggtcgag tgccgaagcc tggtggccgc
     6421 gcatgcggta tgcctggatc aggcgcagga cttccacctg cttcttctcg tgctcgctgc
     6481 tgacgctccc ggcggaaacc ggttgagcgc ggcgctggtt cttcgccagc agcacgaaat
     6541 gatcgcggac agtggagtgc gaaacgtcgg tggcggcatt gccgtcggcc ggcagcttct
     6601 ggaagtaggt gcgccactct tcgggcacag cgttgggatc gtgcaggtag agctcataga
     6661 gctcttccac gtaggccgcg ttaccaccgg ataggtgggc gctttcccac atgcgctgca
     6721 tcacgctttc ttgcatgctt ggtcaccctc ggtaagggga caccaccggc gtggaagccg
     6781 tagcttggcc attcgaagtc ctgaagcagc gacctgataa gccactacgg atcccgcaga
     6841 tagtccgggt accagcccgg atgcccctgc tggtcgtcat tttctttcaa aataagaacc
     6901 ctggctttgt gagctggggc tctggcttta ctgcaccggc gaatcgatcc gccggcgcag
     6961 gtgttgcgtg aagccgtgta tcaggtaccg ctctgcagca gcatgttgcg tacgtgaccg
     7021 atggccttgg tcgggttcag acccttcggg cacacgttca cgcagttcat gatgccgcgg
     7081 cagcggaaca cgctgaacgg atcgtccagg gacgccagac gctctgcggt cttggtgtcg
     7141 cggctgtcgg ccaggaagcg gtaggcctgc agcagcgcgg cgggaccgag gaacttgtcc
     7201 gggttccacc agaaggacgg gcagctggtg gagcagcacg cgcacaggat gcactcgtac
     7261 agaccgtcca gcttctcgcg ctcttccgga ctctgcagac gttcgatggc aggagccggg
     7321 gtatcgttct gcaggaacgg ctgcaccttc tcgtactgct tgtagaagat gctcatgtcg
     7381 acgaccaggt cacgaatgac cggcagaccc ggcagcggac ggatcaccag cttgtcgccc
     7441 ttcaccacgg tggagatcgg ggtgatacag gccaggccgt tcttgccgct gatgttcatg
     7501 ccgtcggaac cgcacacgcc ttcacggcag gagcgacggt aggagaagcc ttcgtcctgt
     7561 tccttgatca gggccagtac gtcgagcacc atcaggtcct tgccgtcgat ctggacggtg
     7621 aagtcctgca tgaacggcgc ggcgtccttt tccgggttgt agcgataaac gctgacttgc
     7681 aaagtgttac caagagacat ggtggccacc cttaataagt acgtactttg ggttcgaacg
     7741 ccggaacggt cttcggcgcg aagttgacgg cgcgcttgga cacgcgcttc tcacccggga
     7801 agtacaggga gtggcacagc cagttctcgt cgtcgcgatc ctcgtagtct tcgcgggcgt
     7861 gagcgccacg ggactcggta cgggtgtcgg cggcgatggc agtggcttcg gccacttcca
     7921 gcaggttctg cagctccagc gcttcgatac gcgcggtgtt gaaggcctgg ctcttgtcgg
     7981 cgatcttgac gttggcgata cgctgacgca gatcggccag ctgggcgatg cccttcttca
     8041 tgtattcgcc ggtacggaac acaccgaagt agttctgcat gcactgctgc agttctttac
     8101 gcagcggagc cacatcttcg ccggtgctgc gctcgttgac gccggacaga cgcttcaggg
     8161 aagcctcgat gtcggtttcg ctggcaccac ggacttccac gccttctttc agcgcttttt
     8221 ccaggtgcag gccggcggcg cggccgaaga cgaccaggtc gagcagcgag ttgccgccca
     8281 gacggttggc accgtgtacc gatacgcagg cgacttcgcc cacggcgaac agaccttcga
     8341 tgatcttgtc gttgccgttg atgtcctggg tgatagcctg gccatgaatg ttggtggcaa
     8401 cgccgcccat catgtagtgg caagtcggga tcaccggaac cggagcgagt accgggtcga
     8461 catgggcgaa ggtcttggac agttcgcaga tgcccggcag gcggctgtgc agcacctcct
     8521 cgccgaggtg atcgagcttc agcagcacgt ggtccttgtc cgggccacag ccgttgccgg
     8581 cgatcacttc cttgaccatg gagcgggcga ccacgtcgcg accggccagg tccttggcgt
     8641 tcggagcgta acgctccatg aagcgctcgc cgtgggcgtt gatcaggtaa ccaccctcac
     8701 cacggcagcc ttcggtgacc agcacaccgg caccggcgat gccggtcggg tgaaactgcc
     8761 acatctcgat gtcctgcacc ggtacgccgg cacgcagggc catgcccacg ccgtcgccgg
     8821 tgttgatcag ggcgttggtg gtggaggcgt agatacggcc agcaccgcca gtggccagaa
     8881 ccacggcctt ggagcggatg tagacggttt cgccggtttc gatgcagatg gcgatgatgc
     8941 cgacgatggc gccgtcctgg ttcttcacca ggtccacggc gtaccactcg ttgaggaacg
     9001 aggtgccggc cttcaggttg gcctggtaca gggtgtgcag cagggcgtga ccggtacggt
     9061 cagccgcggc gcaggtacga gcagcctgga cggacggatt gtccggaccc ttggactggc
     9121 caccgaacgg acgctgatag atgcgaccct gttcggtacg ggagaacggc agacccatgt
     9181 gctcgagctc gaacacggcc tcagggccga cggagcacat gtattcgatc gcgtcctggt
     9241 caccgatgta gtcggagccc ttgacggtgt cgtacatgtg ccagcgccaa tcgtcgttcg
     9301 ggtcggccga agcgatggcg caggtgatgc cgccctgggc ggaaacggtg tgcgaacggg
     9361 tcgggaagac cttggtcacc acggcggtct tgtgaccacc ctgggccagt tgcagcgcgg
     9421 cacgcatgcc agcgccgcca ccaccgacga tgatggcgtc ataagaaaga gtacgaatgc
     9481 tagccatgaa tcagaaaccc cacagaatct gcacacccca gacgaacacg acgaactgga
     9541 gcacgccgca agccgcctgg acgaggaaac gcacaccggt cgcccagcgg ccgatggcca
     9601 tgggcgtcag gtagtcggtg gtgatggtcc acataccgac ccaggcgtgc acgatcagcg
     9661 cgaccagagc cagcaggctg aagatgcgca tcgcagtgtg ggagaacagg ccatgccatt
     9721 cggcgtagcc gatgcccgga ttgaccacca tgtagccgat caggaacagg aaataagccg
     9781 cgagaacgac cgccgatacg cgctgaacca tccagtcata gaggcccgag cgcgagaagt
     9841 tggttacgtt ggttaccata cccagacccc cgccagaacg atgaccacca ccgagacggc
     9901 gatgacgatc ttcgagccca gcttgccgcc ttccagcgac tcgccgaaac ccatgtccat
     9961 gatcaggtgg cgcacgccgg ccaccaggtg atacagcagg gcggacagca gaccccagat
    10021 gatcagcttc gccagcgggc tggccaggta cgcctgaact tctgcgaagc cctcctcgga
    10081 ggccagggat ttgtcgagtg caaagagcac gatgacgata cccaggaaga ggatgacacc
    10141 ggaaatacgg tgcagaatgg acgtataagc tgtgatcggg agttttatgg tcctgagatc
    10201 taggtttaca ggtcgttggc tattcacggc ttttttcaca ctagaggccc ctaacaagca
    10261 gggcaagttg tcgggaagtg cactggtcag gtaccccttc accaaaggga gtgccagccg
    10321 cctgtttatg ggctttcaag cccctgacgg ccgggcgcag agtatagaca gttaggacac
    10381 taatgacaat gcaatggccc accctaaaaa gcggattgcg cgccattaat aaatgacgta
    10441 ttaggccgtt ccccgcccct tcaaaaccgg ctggaacccc tctgctgtct gggttctggc
    10501 aaattgactt tcagatttat gtctctatag tgtcccgggc cctgcgtggg gggctgtcag
    10561 atgattccaa gcataaacag gaggccacac atggctgaca aaaaagcgca gttgatcatc
    10621 gagggcaatg cccccgtaga gctgcccgta ctgaccggca ccgtgggtcc cgatgtagtc
    10681 gacgtgaggg gcctgaccgc cacgggtcgc ttcacctttg atcctggctt tatgtcgacc
    10741 gcctcttgcg agtcgaagat cacctatatt gatggcgacg ccggtgtcct gctgcaccgc
    10801 ggctacccca tcgaacagct ggcagagaac tccgattacc tggaaacctg ctacctgctg
    10861 ctgaacggcg aactgcccaa cgccgaagaa aaagccaagt tcgtcagcac catcaagaac
    10921 cacaccatgg ttcacgagca gctgaagaac ttcttcaacg gtttccgccg cgatgctcac
    10981 ccgatggcca tcatgtgtgg cgtggtcggt gccctctccg ccttctacca cgactcgctg
    11041 gacatcaata acccgcacca ccgcgaagtg tc
//
LOCUS       DATIHC010000494         3781 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36474, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000494 DATIHC010000000
VERSION     DATIHC010000494.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3781
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36474"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..896)
                     /locus_tag="VLF16_08125"
     CDS             complement(<1..896)
                     /locus_tag="VLF16_08125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017517978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSX70888.1"
                     /translation="MPEPRQPLDLLLLPTWLVPVEPAGVVLRDHALGIREGRIALIAP
                     RAEALRHPASEVRELPDCVLTPGLVNAHGHAAMTLFRGLADDLPLMSWLQDHIWPAEA
                     RWVDEAFVRDGTELAIAEQLKGGVSCFSDMYFFPEVASELVHKSGIRAQLTIPVLDFP
                     TPGARDAEEALRKGLRLFDDLKQHSRIKVAFGPHAPYSVSDDKLQQVLMLAEELDAGV
                     HMHVHETAFEVQQSLELHGVRPLQRLANLGLLGPRFQAVHMTQIDEADIELLVASNSS
                     VIHCPESNLKLASGFCPVEKLW"
     gene            990..2066
                     /gene="mtnA"
                     /locus_tag="VLF16_08130"
     CDS             990..2066
                     /gene="mtnA"
                     /locus_tag="VLF16_08130"
                     /EC_number="5.3.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046523 -
                     S-methyl-5-thioribose-1-phosphate isomerase activity
                     [Evidence IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5-thioribose-1-phosphate isomerase"
                     /protein_id="HSX70889.1"
                     /translation="MRDELLAAEKVKAIEWRDGTLFLLDQRVLPREETWLAYDSAAGV
                     AGAIRSMVVRGAPAIGIAAAFGVVLGARARLAAGGDWQAALEEDFKVLAESRPTAVNL
                     FWALDRMRERLQRLKEGDNALAMLEAEAVGIFDSDREANLTMAQLGMDLIRKHQAAPQ
                     KLLTHCNTGALATGGFGTALGVIRAAHLAGLVERVFADETRPWLQGSRLTAWELAGEG
                     VPVSLNADSAAAHLMKTEGITWVIVGADRITANGDVANKIGTYQLAVNAMHHGVRFMV
                     VAPSSTIDMNLEDGEDIPIEERDGRELLDVGGQRIAADVHAVNPVFDVTPADLIDAIV
                     TEKGVVERPDAAKMTQLMCRKRLH"
     gene            2291..>3781
                     /locus_tag="VLF16_08135"
     CDS             2291..>3781
                     /locus_tag="VLF16_08135"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017517976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing)"
                     /protein_id="HSX70890.1"
                     /translation="MGELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPV
                     HRRVLYAMSELGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYML
                     VDGQGNFGSVDGDNAAAMRYTEVRMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMP
                     TKIPNLLVNGSSGIAVGMATNIPPHNLTEVIDGCLALIDNPELTVDELMQYIPGPDFP
                     TAGIINGRAGVIEAYRTGRGRIYMRARATIEDMEKGGNRQQIIVTELPYQLNKARLIE
                     KIAELVKEKKIEGITELRDESDKDGMRVVIELRRGEVGEVVLNNLYAQTQMQSVFGIN
                     VVALVDGQPRTLNLKDMLEVFVRHRREVVTRRTVYELRKARERGHILEGQAVALSNID
                     PVIELIKTSPTPAEAKERLIATAWASSAVEAMVERAGADSCRPEDLDPRYGLRDGKYY
                     LSPEQAQAILELRLHRLTGLEHEKLLSEYQEILTQIGELIRILTSPE"
BASE COUNT          686 a         1219 c         1279 g          597 t
ORIGIN      
        1 tgccagagct tctccaccgg gcagaagccg ctggcgagct tgaggttgga ctcggggcag
       61 tggattacgc tgctgttgct ggccaccagc agctcgatgt ccgcctcgtc tatctgggtc
      121 atgtgcacgg cctggaaacg cgggcccagc aatcccaggt tcgccagccg ctgcagtgga
      181 cgcacgccgt gcagctccag gctctgctgt acctcgaagg cggtctcgtg gacgtgcatg
      241 tggacgccgg cgtcgagctc ctccgccagc atcagcacct gctgcagctt gtcgtcgctg
      301 accgaatagg gcgcatgggg gccgaaggcg accttgatgc gcgagtgctg cttgaggtcg
      361 tcgaacaggc gcaagccctt gcgcagcgcc tcctcggcgt cgcgagcgcc gggggtgggg
      421 aagtccagca cgggaatggt cagctgggcg cggatgccgc tcttgtgcac cagctcgctg
      481 gccacctccg ggaagaagta catgtcggag aagcagctga cgccgccctt gagctgctcg
      541 gcgatggcca gctcggtgcc gtcgcgcacg aacgcctcgt cgacccacct ggcctcggcc
      601 ggccagatat ggtcctgcag ccagctcatc agcggcaggt cgtcggccag gccgcggaac
      661 agggtcatgg cggcgtggcc gtgggcgttg accaggccgg gagtgagcac gcaatccggt
      721 agctcacgta cctcgctggc cggatggcgc agggcctcgg cgcgcggcgc gatcagggcg
      781 atgcgtccct cgcggatgcc cagggcatgg tcgcgcagta ccacgccagc gggctcgacg
      841 ggcaccagcc aggtgggcag gagcaacaga tcgagcggct ggcgcggttc gggcatgaca
      901 ggcatccggg ctggagaaac agggcggcag tataactgag ccatgttggc ggcggctcgc
      961 tataatccgc ggcttttcga ggggatgtca tgcgcgacga actgttggca gcagagaagg
     1021 ttaaagccat cgagtggcgc gacggcacgt tgttcctcct ggatcagcgc gtattgccgc
     1081 gcgaggagac ctggctggcc tacgattcgg ccgccggtgt ggccggggcg atccgcagca
     1141 tggtggtgcg cggcgcaccg gccatcggca tcgccgccgc cttcggtgtg gtgctgggcg
     1201 cgcgggcgcg cctggccgca ggtggcgact ggcaggcggc gctggaagaa gacttcaagg
     1261 tgctggccga atcgcggccg accgcagtca atctgttctg ggcgctggac cgcatgcgtg
     1321 agcgcctaca gcgtcttaaa gagggcgata acgccctggc gatgctggag gccgaggcgg
     1381 ttggcatctt cgacagcgac cgggaggcca acctgaccat ggcccaactc ggcatggatc
     1441 tgatccgcaa gcaccaggcg gccccgcaga agctgctcac ccactgcaac accggtgcgc
     1501 tggccaccgg cggtttcggc accgccctgg gcgtgatccg cgccgcgcac ctggctgggc
     1561 tggtcgagcg ggtcttcgcc gacgagaccc gcccctggct gcagggctcg cgcctgaccg
     1621 cctgggagct ggcgggcgag ggcgtgccgg tgagtctgaa cgccgactcc gccgccgcac
     1681 atttaatgaa gaccgaaggc atcacctggg tcatcgtcgg ggccgaccgc atcaccgcca
     1741 atggcgacgt ggccaacaag atcggcacct atcagctggc ggtcaacgcc atgcatcacg
     1801 gcgtacgctt catggtggtc gcgcccagct cgaccatcga tatgaacctg gaagacggcg
     1861 aagacatccc catcgaggag cgcgacggcc gtgagctgct ggatgtgggc ggccagcgca
     1921 tcgccgccga cgtgcacgcg gtcaatccgg tattcgacgt gactccggcc gacctgatcg
     1981 acgcgatcgt cactgaaaag ggcgtggtcg agcggccgga tgcggcgaaa atgacgcaac
     2041 tcatgtgtcg caagcgtctg cactgaatcc ctcggcgggg cgccgggcgg ggtaggtgcc
     2101 gacgggtgac tgtggtaatc tccgccagtt ctcgggcggc tccgtgaggg tcgcttcaat
     2161 agcgcaaata accgagttaa ctctttgatt tgtcgtgagt cgctgccgag caggggtgac
     2221 tacggcggac tccggtccga cccaggatgg gtgcggcggg gtttcaccag aataaggaac
     2281 caggcttctc atgggcgaac tggccaaaga aatcctcccg gtcaacatcg aagacgagct
     2341 gaaacagtcc tacctcgact acgccatgag cgtgatcgtc gggcgtgcgc tgccggatgc
     2401 gcgtgacggc ctgaagcccg tgcaccgccg cgtgctctac gccatgagcg agctgggcaa
     2461 cgactggaac aaggcctaca agaagtccgc ccgtgtggtc ggtgacgtga tcggtaagta
     2521 ccacccgcac ggcgacacgg ctgtctacga caccatcgtg cgcatggctc agccgttctc
     2581 cctgcgctac atgctggtcg acggccaggg caacttcggt tcggtggacg gtgacaatgc
     2641 cgcggccatg cgatacaccg aagtgcgcat ggccaagctg gcccacgagc tgctggccga
     2701 cctggacaag gaaaccgtcg actgggtgcc caactacgat ggcaccgagc agatcccggc
     2761 ggtcatgccg accaagatcc ccaacctgct ggtcaacggc tcgtccggta tcgccgtggg
     2821 catggcgacc aacattccgc cgcacaacct gaccgaggtc atcgacggct gcctggcgct
     2881 gatcgacaac cccgagctga ccgtcgacga gctgatgcag tacatccccg gtccggactt
     2941 ccccactgcc ggcatcatca acggtcgcgc gggcgtcatc gaggcctacc gcaccggccg
     3001 tggccgcatc tacatgcgtg cccgtgcgac gatcgaggac atggagaagg gcggcaaccg
     3061 ccagcagatc atcgtcaccg agctgccgta ccagctgaac aaggcgcgtc tgatcgagaa
     3121 gatcgccgag ctggtcaaag agaagaagat cgaaggcatc accgaactgc gcgacgagtc
     3181 cgacaaggac ggcatgcgcg tggtcatcga gctgcgccgt ggcgaagtcg gcgaggtggt
     3241 gctgaacaac ctctacgccc agacccagat gcagagcgtg ttcggcatca acgtcgtggc
     3301 cctggtcgat ggccagccac gcacgctgaa cctcaaggac atgctcgaag tgttcgtccg
     3361 tcaccgccgc gaagtggtga cccgccggac cgtctacgag ctgcgcaagg cccgtgagcg
     3421 tggccacatc ctcgaaggtc aggccgtcgc gctgtcgaac atcgacccgg tgatcgagct
     3481 gatcaagacc tcgccgaccc cggccgaggc caaggagcgc ctgatcgcta ccgcctgggc
     3541 ttccagcgcc gtagaggcga tggtcgagcg cgccggcgcc gattcctgcc gtccggaaga
     3601 cctggacccg cggtacggcc tgcgcgacgg caagtactac ctgtcgcccg agcaggctca
     3661 ggccatcctc gagctgcgtc tgcaccgcct gaccggtctg gagcacgaga agctgctctc
     3721 cgagtaccag gaaatcctca cccagatcgg cgagttgatc cgcatcctga ccagccccga
     3781 g
//
LOCUS       DATIHC010000495         2133 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_3723, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000495 DATIHC010000000
VERSION     DATIHC010000495.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2133
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3723"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..418
                     /locus_tag="VLF16_08140"
     CDS             <1..418
                     /locus_tag="VLF16_08140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011058740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HisA/HisF-related TIM barrel protein"
                     /protein_id="HSX70891.1"
                     /translation="GEAADRFGSQCIVVAIDAKRVAPGRWEIFTHGGRKPTGLDAVAW
                     AKKMEDLGAGEILLTSMDQDGVKSGYDLGVTRAISEAVNVPVIASGGVGNLEHLAAGI
                     LEGKADAVLAASIFHFGEYSVPEAKAYLASRGIVVR"
     gene            520..1254
                     /locus_tag="VLF16_08145"
     CDS             520..1254
                     /locus_tag="VLF16_08145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009613828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSX70892.1"
                     /translation="MLFPRLLTLFLLLVGTVQARAESLVLLTENLPPFNMAVSGGNFA
                     RDDGISGISAETLRLVCQRAGIECQQILRFPWERVYNQALDEAGYGLFSVARTAEREA
                     LFKWVGPIAGEDWVLLARGDSPIQLSSLQQAGEYRLGGYKGDAPSQHVVDQGLAVQLS
                     LYDKENPERLANGQIDLWVTSSVAGQYLARQQGHADFRVALTFGRGDLYLALNRQTSD
                     ATVDKLRAALEQLRDEGALQGVMQKY"
     gene            1462..>2133
                     /locus_tag="VLF16_08150"
     CDS             1462..>2133
                     /locus_tag="VLF16_08150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004373994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSX70893.1"
                     /translation="MLKYLHKTLLLGLLLLAGTARAELSEDYKVILLTENFPPFNMAI
                     DEKNFARDDNIDGISADLVREVFKRANIGYNLSLRFPWDRIYRLTLDKPNYGLFSTTF
                     TEERKPLFKWVGPLAKSEWVLLAAPGSTIKVNSLEEAAQYKIGAYKNDAVSQHLESKG
                     LTPENSLRDQENVAKLMSGKIDLWATTDPVGRYIAKQEGASGLQVVLRFNSAELFLAL
                     NKETPD"
BASE COUNT          383 a          703 c          700 g          347 t
ORIGIN      
        1 cggcgaggcc gccgatcgtt tcggttccca gtgcatcgtc gtcgccatcg atgccaagcg
       61 cgtggcgccg ggccgttggg aaatcttcac ccacggcgga cgcaagccga ccggcctgga
      121 tgcggtggcc tgggcgaaaa agatggaaga cctgggcgcc ggcgagatcc tgctgaccag
      181 catggaccag gacggtgtga agagcggtta cgatctgggc gttacccgtg ccatcagcga
      241 ggcggtgaat gtgccggtga tcgcctccgg cggggtcggc aatctggagc acctggccgc
      301 cggcattctc gagggcaagg ccgacgcggt gctcgccgcc agcatcttcc acttcggcga
      361 atacagcgtg ccggaagcca aggcctacct ggccagccgc ggcatcgtgg tgcgctgaag
      421 gcggggctgt gcgggagtcg ccagccgggc gccgggcggc cggctagaat gagcgggtct
      481 gttcgccatt ggcgaactcc cgttcgacaa ggagtcccta tgctgttccc gaggctgctg
      541 accctgttcc tgctgttggt cggcaccgta caggcgcggg ccgaatcgct ggtcctgctc
      601 accgaaaacc ttcccccctt caacatggcc gtcagcggcg gcaacttcgc ccgcgacgac
      661 ggcatctccg gcatcagcgc cgagaccctg cgcctggtct gccagcgcgc cggcatcgaa
      721 tgccagcaga tcctgcgctt cccctgggag cgcgtgtaca accaggcgct ggacgaggcc
      781 ggctatggcc tgttctcggt ggcgcgcacg gcggagcgcg aggcgctgtt caagtgggtc
      841 ggcccgattg ccggcgaaga ctgggtgctg ctcgcccgcg gcgactcgcc gatccagctg
      901 agcagcctgc agcaggccgg ggagtatcgc ctgggcggct acaagggcga tgcacccagc
      961 cagcacgtgg tcgaccaggg cttggcggtg cagctgtcgc tgtacgacaa ggaaaacccg
     1021 gagcgtctgg ccaatgggca gatcgatctg tgggtgacct cgtcggtcgc cggccagtac
     1081 ctggcccgcc agcagggcca tgccgatttt cgcgtggccc tgaccttcgg ccgcggcgac
     1141 ctctacctcg cgctgaatcg acagacctct gatgccaccg tggacaagct gcgcgccgcc
     1201 ctcgagcaat tgcgtgacga aggcgcgttg cagggcgtga tgcagaagta ctgagctggt
     1261 tcgtttcttg cctgtttttg ccctgcccga catgcgccgc cggcgtgacg cagttcaacg
     1321 tagttggtcc gtggcgtggc actatgcccg ccactgcgcc ggtaccgtgc cggtagaaga
     1381 ccgcccgggg cgcctgccct caaggtggca tttgcagacg aagtcgccga acaacaacca
     1441 caactctgga gctgtactgc aatgttgaag tatctgcaca agacgctgct gctgggcctg
     1501 ctgttgctgg ccggcactgc gcgcgccgag ctctccgaag actacaaggt gatcctgctg
     1561 acggagaatt tcccgccgtt caacatggcc atcgacgaga agaacttcgc ccgcgacgac
     1621 aacatcgacg gcatcagtgc cgacctggtg cgcgaagtct tcaagcgcgc caacatcggc
     1681 tacaacctga gcctgcgctt cccctgggac cgcatctacc gcctgaccct ggacaagccc
     1741 aactacggcc tgttctccac caccttcacc gaagaacgca agccgctgtt caagtgggtc
     1801 ggcccgctgg ccaagagcga gtgggtgctg ctcgccgcgc cgggcagcac catcaaggtg
     1861 aacagcctgg aagaggccgc ccagtacaag atcggcgcct acaagaacga cgccgtcagc
     1921 cagcacctgg agagcaaggg cctgacgccg gaaaactccc tgcgcgacca ggaaaacgtg
     1981 gccaagctga tgagcggcaa gatcgacctg tgggccacca ccgacccggt cggccgctac
     2041 atcgccaagc aggaaggcgc cagcggcctg caggtggtgc tgcgcttcaa cagtgccgag
     2101 ctgttcctgg cgctgaacaa ggagaccccg gac
//
LOCUS       DATIHC010000496         1572 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31703, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000496 DATIHC010000000
VERSION     DATIHC010000496.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31703"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            561..>1572
                     /locus_tag="VLF16_08155"
     CDS             561..>1572
                     /locus_tag="VLF16_08155"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017245108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HSX70894.1"
                     /translation="MHAWSPDSWRKHPIQQQPEYPDAAHLARVEQTLAGYPPLVFAGE
                     ARELRRQFAEVTQGRAFLLQGGDCAESFAEFSAAKIRDTFKVMLQMAIVMTFAAGCPV
                     VKVGRMAGQFAKPRSSGSETIDGVTLPAYRGDIVNGIGFDAASRVPDPDRLLQAYHQA
                     TASLNLLRAFAQGGFADVHQVHQWNLDFIANSALSEKYHQLANRIDETLAFMRAVGMD
                     SAPQLREVSFFTAHEALLLNYEQAFVRQDSLTGRWYDCSAHMLWIGDRTRQLDGAHVE
                     FMRGIENPIGVKVGPSMDPDELIRLIDVLNPDNDPGRLNLIVRMGADKVEANFPRLLR
                     KVK"
BASE COUNT          285 a          563 c          488 g          236 t
ORIGIN      
        1 tgccacgcac catggtctga gtcgcgcagc gtggcgagga cacgtagtgg atcacgcctc
       61 accgatcacc gggcggtgcc attggtggat gagcaaagcg tcattcaccc tacatgctgc
      121 cgagtctggt ggcggagcac ggcttgcagt ccgcctgagg tagcccggat gcaatccggg
      181 agcggagctg ccagcgtccc ggattgcatc cgggctacga ccctgccacg caccatggtc
      241 tgagtcgcgc agcgtggcga ggacacgtag tggatcacgc ctcaccgatc accgagcggt
      301 gccattggtg gatgagtaaa gcgtcatcca ccctacagct gaagccacat cctacctcat
      361 ggtgcgcacg gcgcacccta cccgccaaag cgcaatttcg tggggcgcgc cgtgcgcgcc
      421 acaacccacc gaccccatat gccctcgaac cctgcgcaac cggccctgct ggggaaaccg
      481 gtgcgcacgg cgcaccctac gggacggggc ttatcggtta agatgccgcc agcccgaaca
      541 gtcgatagcc gagaagcccg atgcacgcct ggagccccga cagctggaga aagcacccca
      601 tccagcagca acccgaatac cccgatgccg cccacctggc ccgcgtggag cagaccctgg
      661 ccggctaccc gccgctggtg ttcgccggcg aggcccgtga gctgcgccgc cagttcgccg
      721 aggtcaccca gggtcgtgcc ttcctgctgc agggcggcga ctgcgccgag agcttcgcgg
      781 agttcagcgc ggcgaagatc cgcgacacct tcaaggtgat gctgcagatg gccatcgtca
      841 tgaccttcgc cgccggctgc ccggtggtga aggtcggacg catggccggc cagttcgcca
      901 agccgcgttc ttccggcagc gagaccatcg atggcgtgac cctgccggcc tatcgcggcg
      961 acatcgtcaa cggtatcggc ttcgacgccg ccagccgcgt accggacccg gaccgcctgc
     1021 tgcaggccta ccaccaggcc accgccagcc tcaatctgct gcgcgccttc gcccagggcg
     1081 gcttcgccga cgtgcaccag gtgcaccagt ggaacctgga cttcatcgcc aattccgcgc
     1141 tgagcgagaa gtaccaccaa ctggccaacc gcatcgacga gaccctcgcc ttcatgcgcg
     1201 cggtcggcat ggacagcgcg ccgcagttgc gcgaagtcag cttcttcacc gcccacgagg
     1261 cgctgctgct caattacgag caggccttcg tgcgccagga cagcctcacc gggcgctggt
     1321 acgactgctc cgcgcacatg ctgtggatcg gcgaccgcac ccgccagctg gacggcgccc
     1381 acgtcgagtt catgcgcggc atcgagaacc ccatcggggt caaggtcggc ccgagcatgg
     1441 acccggacga gctgatccgc ctgatcgacg tgctcaaccc ggacaatgat ccgggccgcc
     1501 tcaacctgat cgtgcgcatg ggcgccgaca aggtcgaagc caatttcccg cgcctgctgc
     1561 gcaaggtgaa gg
//
LOCUS       DATIHC010000497         4307 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_26382, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000497 DATIHC010000000
VERSION     DATIHC010000497.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4307)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4307)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4307
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26382"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1206)
                     /gene="putP"
                     /locus_tag="VLF16_08160"
     CDS             complement(<1..1206)
                     /gene="putP"
                     /locus_tag="VLF16_08160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005298 - proline:sodium symporter
                     activity [Evidence IEA];
                     GO_process: GO:0015824 - proline transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HSX70895.1"
                     /translation="MTASTPMLITFVVYIAAMVLIGLIAYLRTKNLSDYILGGRSIGS
                     FVTALSAGASDMSGWLLMGLPGAIFVAGISESWIAIGLVVGAYLNWLFVAGRLRVQTE
                     HNGNALTLPDYFTNRFEDNSRILRIFSALVILVFFTIYCASGVVAGARLFESTFGMSY
                     ETALWAGAAATIAYTFIGGFLAVSWTDTVQATLMIFALILTPVMVMVATGGMDTTFAA
                     IELKDATNFDMLKGATFIGVISLMAWGLGYFGQPHILARFMAADSVKSIPAARRISMT
                     WMILCLGGAVAVGFFGIAYFSAHPELAGPVSENPERVFIELAKILFNPWIAGILLSAI
                     LAAVMSTLSCQLLVCSSALTEDFYKAFLRKGASQKELVWVGRAMVLLVAIVAIVLASN
                     PDNRVLGLVS"
     gene            complement(1594..3555)
                     /locus_tag="VLF16_08165"
     CDS             complement(1594..3555)
                     /locus_tag="VLF16_08165"
                     /inference="COORDINATES: protein motif:HMM:NF012245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHASE3 domain-containing protein"
                     /protein_id="HSX70896.1"
                     /translation="MRLSIGAKLWGSFCAILLVIVVIGGISYRNTLNMQETARWVAHT
                     HEVLAQLNRLLSSVQDAETGQRGYLITGAERYLAPYTAARERIDQEVQGLRQLVDDNP
                     EQQRRVDRLEPLLAQRLQALADTITLHRSQGFEVARQQVLTDQGMEVMREIRAVVGEM
                     SDDERRLQAVRDTAAAVSANGAQQAILIGLALSALIVVVAALFLTQHIARPLRAVSEV
                     ADKVSAGNLAVELAARPRSDEIGLLQGSIERMLRSLRQTAESARQIAAGNLAIEVQPQ
                     SQDDQFGQAFAAMIQALRHVAESARQIAAGNLAVDVQPQSPGDQFGQAFSRMLQSLRQ
                     MAESARQIAAGNLTIEVQPQSSGDLLGNAFAQMLVDLRQINGDIRSGIEVLTDSASEI
                     AAGSYQIAAGTAETATAISETSTTVEEIKQTAMLSSQRALSVSQTAQRSIQVSQDGRR
                     AVDEVSEGMRRIHQQMELVGENITRLAEQVQTIGEIIATVNDLAEQSNLLAVNASIEA
                     AKAGEQGKGFSVVAQEVKSLAEQSKQATVQVRGILGEIQRATSSTVLAAEQGSRAVSE
                     GVKQSGQAGEAIRLLSLSIDEGAQAVAEIAVSAQQQLAGMDQLVQAMESIREASAQNM
                     SSSKQAEAAAQGLQRLGQKMKDMLARFQI"
     gene            complement(3704..>4307)
                     /locus_tag="VLF16_08170"
     CDS             complement(3704..>4307)
                     /locus_tag="VLF16_08170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019484473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HSX70897.1"
                     /translation="AQAPFAGEWALPGVLVNGRSADASLDAAAERALQDKARIAPAHL
                     EQVTTVGNANRDPRGWSLSTVYLALLAPDMALQDEDLRFVALAEVLQGRQALPFDHAQ
                     LVAQAAERLAGKAVYTSLPLYLLAPRFTVTEALAAFQASLGQAVQHTTLRGRLEKMKQ
                     HGWVLDTGDKNQPRMGRPQALLEHRPQQRGGFVFDRSVLS"
BASE COUNT          686 a         1433 c         1497 g          691 t
ORIGIN      
        1 ggacaccagg cccagtacac ggttatccgg gttggaggcc aggacgatgg cgacgatggc
       61 caccagcagc accatggcac ggccgaccca gaccagttct ttctggctgg cgcccttgcg
      121 caggaaggcc ttgtagaagt cctcggtcag agcactggag cacaccagca gctggcagct
      181 gagggtggac atcacggcgg ccaggatggc ggacagcagg atgccggcga tccacgggtt
      241 gaacaggatc ttggccagtt cgatgaacac gcgctcgggg ttctcgctga ccgggccggc
      301 cagttccgga tgggccgaga agtaggcgat gccgaagaag cccacggcca cggcgccgcc
      361 gaggcagagg atcatccagg tcatggagat gcgacgagcg gccgggatcg acttgaccga
      421 atcggcggcc atgaagcgcg ccaggatgtg cggctggccg aagtagccca agccccaggc
      481 catcagcgag atcacgccga tgaaggtggc acccttgagc atgtcgaagt tggtggcgtc
      541 cttcagctcg atggcggcga aggtggtgtc catgccgccg gtggcgacca tcaccatcac
      601 cggggtgagg atcagggcga agatcatcag ggtggcctgc acggtgtcgg tccagctcac
      661 cgccaggaag ccaccgatga aggtgtaggc gatggtggcg gcggcaccgg cccacagggc
      721 ggtctcgtag ctcatgccga aggtgctttc gaacaggcgg gcaccggcga ccacgccgga
      781 ggcgcagtag atggtgaaga acaccaggat caccagggcc gagaagatgc gcaggatgcg
      841 gctgttgtcc tcgaagcggt tggtgaagta gtccggcagg gtcagggcat tgccgttgtg
      901 ctcggtctgc acgcgcaggc ggccggcgac gaacagccag ttgaggtagg caccgaccac
      961 caggccgatg gcgatccagc tctcggaaat gccggcgacg aagatggcgc ccggcaggcc
     1021 catcagcagc cagccgctca tgtcggaggc gccggcggac agggcggtga cgaagctgcc
     1081 gatgctgcgg ccaccgagga tgtagtcgga caggttcttg gtacgcagat aggcgatgag
     1141 gccgatcagg accatcgcgg cgatatacac cacgaaggtg atcagcatgg gggtgctagc
     1201 tgtcatggga ggatgccctc tcgcttgttg ttatgcgccg cgacgggttg tccgcggcag
     1261 ggttggcaaa cgcatccgct cgtgacggac gctgtgttgc cccgatcgtt gaaccggggc
     1321 ggtacttagg tggacgcccg ctgccggcgc cacatcaccg tttccctccc ggaaacgccg
     1381 acggggcacg cacagcgcac cccgccagaa tgtcgaacgc agctcggcgt gacttctacc
     1441 attggtttag cccatcgtcc gggtgacaca agcgacgacg cgcggcctgc caccgaagcg
     1501 ggatgcagga ctctagtgac aggcgcatga ccgcttcttg cgaaaagctc cggagttttt
     1561 gcgaaaaact ccggagcccg cggcggctcg cgctcagatc tggaagcgcg ccagcatgtc
     1621 cttcatcttc tgcccgagcc gctgcaggcc ctgggccgcc gcctcggcct gtttggaact
     1681 ggacatgttc tgcgcgctgg cctcgcggat gctctccatg gcctgcacca gttggtccat
     1741 gccggccagc tgctgctggg cggagacggc gatctcggcc accgcctggg cgccctcgtc
     1801 gatgctcagc gacagcaggc ggatggcctc gccggcctgg ccggactgct tgaccccctc
     1861 gctcaccgcc cggctgccct gctccgcggc cagcacggtg ctgctggtgg cgcgctggat
     1921 ctcgccgaga atgccgcgca cctgcacggt ggcctgcttg gattgctcgg ccaggctctt
     1981 cacctcctgc gccaccaccg aaaagccctt accctgctcg ccggccttgg ccgcctcgat
     2041 ggaggcgttg accgccagca ggttggactg ctcggccagg tcgttgaccg tggcgatgat
     2101 ctcgccgatg gtctgcacct gctcggccag gcgggtgatg ttctcgccga ccagctccat
     2161 ctgctggtgg atgcgccgca tgccctcgct cacctcgtcc accgcccggc gaccgtcctg
     2221 ggagacctgg atcgagcgct gcgcggtctg cgacaccgac agcgcgcgct ggctggagag
     2281 catcgccgtc tgcttgatct cctccaccgt ggtgctggtc tcgctgatcg cggtggccgt
     2341 ctccgccgtg cccgcggcga tctgatagga accggcggcg atctcgctgg ccgagtccgt
     2401 gagcacctcg atgccgctgc ggatgtcgcc gttgatctgg cgcaggtcga ccagcatctg
     2461 cgcgaaggca ttgccgagca ggtcgccgga cgattgcggc tgcacctcga tggtcaggtt
     2521 gccggcggcg atctgccggg ccgattcggc catctgccgc agggactgga gcatgcgcga
     2581 aaaggcctgg ccgaactggt cgccgggcga ctgcggctgc acatcgacgg ccaggttgcc
     2641 ggcggcgatc tgccgggccg actcggcgac gtgacgcagg gcctggatca tggcggcgaa
     2701 ggcctggccg aactgatcgt cctgcgactg cggttgcacc tcgatggcca ggttgccggc
     2761 ggcgatctgc cgggccgact ccgcggtctg gcgcaacgag cgcagcatgc gctcgatgga
     2821 gccctgcagc aggccgatct cgtcggagcg cgggcgtgcc gccagctcca ccgccaggtt
     2881 gccggcactg accttgtccg ccacctcgct gaccgcgcgc agcggccggg cgatgtgctg
     2941 ggtgaggaac aatgccgcga ccaccacgat cagcgccgag agcgccagac cgatcaggat
     3001 cgcctgctgc gcgccgttgg cgctgacggc cgccgccgtg tcacgaaccg cctgcagacg
     3061 gcgctcgtcg tcgctcatct cgccgaccac cgcgcggatt tcgcgcatga cctccatgcc
     3121 ctggtcggtc agcacctgct gccgggcgac ctcgaagccc tggctgcggt gcagcgtgat
     3181 ggtgtcggcc agcgcctgca ggcgctgggc cagcagcggc tccaggcgat ccacgcggcg
     3241 ctgctgctca gggttgtcgt ccaccagctg gcgcagcccc tgcacctctt ggtcgatgcg
     3301 ctcgcgggcc gcggtgtagg gcgccaggta gcgttcggcg ccggtgatca ggtaaccccg
     3361 ctggccggtc tcagcatcct gaaccgagga cagcaggcga ttcagctggg ccagcacctc
     3421 atgggtgtgg gcgacccagc gcgcggtctc ctgcatgttg agcgtgttgc gataggaaat
     3481 gccgccgatg acgacgatga ccagcagaat ggcgcagaag ctgccccaca gcttcgcccc
     3541 gatggataac ctcattgtca gcctcccagg ctctttatcg ttccccgcct tcagtgatag
     3601 ctcagaatca ccgatttggc cctggccgcc gcgccgcaat ggcggcggag gccctttcgc
     3661 gttccgaccg gaacacgcgg cgaaggtgcg gggaagatgt cgctcaggac agcacgctgc
     3721 ggtcgaagac gaagccgccg cgctgctgcg ggcgatgctc cagcagggcc tgcggccggc
     3781 ccatgcgcgg ctggttcttg tcgccggtgt cgagcaccca gccgtgctgc ttcatcttct
     3841 ccagccggcc gcgcagggtg gtgtgctgca ccgcctggcc gaggctggcc tggaacgccg
     3901 ccagcgcctc ggtgacggtg aagcgcggcg ccagcagata cagcggcagc gaggtgtaga
     3961 ccgccttgcc ggccaggcgc tcggcggcct gggccaccag ttgggcatga tcgaacggca
     4021 gcgcctggcg cccctgcagc acctcggcca gggcgacgaa acgcaggtcc tcgtcctgca
     4081 gcgccatgtc cggcgcgagc agcgccaggt agacggtcga cagcgaccag ccgcgcggat
     4141 cgcgattcgc gttgccgacg gtggttacct gctccagatg ggccggcgcg atgcgcgcct
     4201 tgtcctgcag tgcgcgctcg gccgcggcat ccaggctggc gtcggcgctg cggccgttga
     4261 ccagcacacc gggcaacgcc cattcaccgg cgaacggcgc ctgggcc
//
LOCUS       DATIHC010000498         1830 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_23986, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000498 DATIHC010000000
VERSION     DATIHC010000498.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1830
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23986"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..236)
                     /locus_tag="VLF16_08175"
     CDS             complement(<1..236)
                     /locus_tag="VLF16_08175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSX70898.1"
                     /translation="MRLKCIKLAGFKSFVDPTTVSFPSNMAAVVGPNGCGKSNIIDAV
                     RWVMGESSAKNLRGESMTDVIFNGSNTRKPVTQAS"
     gene            409..1023
                     /locus_tag="VLF16_08180"
     CDS             409..1023
                     /locus_tag="VLF16_08180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017002343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70899.1"
                     /translation="MLSEPRWNDLWQTLGGTLPRGSFAELSAAYAAADRHYHGSAHIE
                     ACLSHLDRWRHLARDAALVELALWTHDLIYDTRRQDNEAASAERACQWLEEAGLGERA
                     PALREMILATRHQVAPADADAALVVDIDLSILATDERTYAGYEAAVRAEYAWVPEPLF
                     RAGRARLLRQLLTAAPLYHHAPLAARWEAPARRNLQAALAKLER"
     gene            complement(1020..1343)
                     /locus_tag="VLF16_08185"
     CDS             complement(1020..1343)
                     /locus_tag="VLF16_08185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017679191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70900.1"
                     /translation="MNKACLSLTLLLALSGCALQPGVTPKDDAPAQKQQSHPRYAPPP
                     GGNAYWDPALGVYVIQGADKLYYRERVYYRWSRGWTWASSPNGPWQPTDSSGVPAGLG
                     RTIAD"
     gene            complement(1340..>1830)
                     /locus_tag="VLF16_08190"
     CDS             complement(1340..>1830)
                     /locus_tag="VLF16_08190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007946747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcmI"
                     /protein_id="HSX70901.1"
                     /translation="ASYWQRLLEQMPADDPSRASIQVGIDKAREQLQASGQPAPEELV
                     NKSMAVISVSVDLAPELKAKVQPGDAVFIFARAASGPPMPLAVKRLTVADLPAKVELS
                     DKDAMMEQLKLSSFAEVQLVARISRSGVATQGEWVGRGQPIPSSTREPQQLLIDSPEQ
                     AQ"
BASE COUNT          271 a          609 c          654 g          296 t
ORIGIN      
        1 gaggcctggg tcaccggctt gcgggtgttg gagccattga agatgacgtc ggtcatcgac
       61 tcgccgcgca ggttcttcgc cgaactctcg cccatcaccc agcgcacggc gtcgatgatg
      121 ttggacttgc cgcagccgtt gggcccgacc accgccgcca tgttgctcgg gaagctcacg
      181 gtagtggggt cgacgaagga cttgaagccc gccagcttga tgcacttcag gcgcatgccg
      241 gagcctgcgc gaagaccggg tcggcgccac gcgggacata gctgtccgct gccatcgagt
      301 gcatgaaaat ccttgtgatt gaggggcgaa acgggaagtc gcgcgagtgt atcacagggt
      361 ttttcgccgc cgcgctatgc tgtccgcccc aatctggaga ggccttggat gctctcggag
      421 ccacgctgga atgacctgtg gcagacactc ggcggcaccc tgccgagggg cagcttcgcc
      481 gagctgagcg ccgcgtatgc cgcagcggat cgccactacc acgggagcgc ccatatcgag
      541 gcctgcctga gtcatctgga ccgctggcgg cacttggcca gggacgccgc gctggtggag
      601 ctggcgctgt ggacccacga tctgatctac gacactcgcc gccaggacaa cgaggcggcc
      661 agcgccgaac gcgcctgcca gtggctggag gaagccgggt taggtgaacg ggcaccggcg
      721 ctgcgcgaga tgatcctcgc cacccgccat caggtggcgc cggcggatgc cgacgccgcc
      781 ctggtggtgg acatcgacct gtccatcctg gccacggatg agcggacgta tgccggctac
      841 gaggcggcgg tgcgcgccga gtacgcctgg gtgccggagc cgctgttccg cgccggccgc
      901 gccaggctgc tgcgccagct actaacggcc gccccgctgt accaccacgc gccactggcg
      961 gcgcgctggg aagcgccggc gcggcgtaac ctgcaggcgg cgctggcgaa gctggagcgc
     1021 tagtcggcga tggtccgacc gagcccagcc ggcacgccgc tgctgtcggt gggctgccac
     1081 gggccgttgg ggctgctggc ccaggtccag ccgcggctcc agcggtaata cacgcgctcg
     1141 cggtagtaca gcttgtcggc gccctggatc acatagacgc ccagcgccgg gtcccagtag
     1201 gcattgccgc cgggcggcgg tgcgtagcgc gggtggctct gctgcttctg cgcgggggcg
     1261 tcgtccttgg gcgtgacgcc cggttgcagg gcgcagccgc tcagggcgag cagcagggtc
     1321 agggaaagac atgccttgtt cattgcgcct gctccgggct gtcgatcaac agttgctggg
     1381 gttcgcgggt gctgctggga atcggctgac cgcggccgac ccactcaccc tgggtggcca
     1441 cgccgctgcg cgagatgcgc gcgaccagct gcacctcggc gaagctggag agcttgagct
     1501 gctccatcat cgcatccttg tcgctcagct cgaccttcgc cggcagatcg gccacagtca
     1561 ggcgcttgac cgccagcggc atgggcgggc ctgaggcagc gcgggcgaag atgaacaccg
     1621 cgtcgcccgg ctgcaccttg gccttgagtt ccggggccag gtcgacgctg acgctgatca
     1681 ccgccatgga cttgttgacc agctcttcag gggccggctg gccgctggcc tgcagctgct
     1741 cgcgggcctt gtcgatgccg acctggatcg aggcgcgcga cggatcgtcc gccggcatct
     1801 gctccagcag acgctgccag tagctggcgg
//
LOCUS       DATIHC010000499         2194 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12961, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000499 DATIHC010000000
VERSION     DATIHC010000499.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2194)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2194
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12961"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..790
                     /locus_tag="VLF16_08195"
     CDS             <1..790
                     /locus_tag="VLF16_08195"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70902.1"
                     /translation="HGEGGADRISGGNGDDVIHGDSCWQPSGDDRLSGNAGDDRLYGG
                     WGNDLLRGGAGADHLDGGEGQDTADYADAASRVWVRLDSLTALVDNSEADGDLLLNIE
                     NLGGSRFDDDLRGNQGDNRLHGRDGDDRLIGLGGSDRLYGGAGDDWLFGGVSSVEADG
                     NDYLSGGEGRDTFQVRLSIREPDSGGFLDADFGTDTILDFNPQEDLLQFVASISAFSQ
                     LNISEHQSAAGTGTLIEANNHSKVFLLGVVADQLNEANMQHIQA"
     gene            1058..2143
                     /gene="hppD"
                     /locus_tag="VLF16_08200"
     CDS             1058..2143
                     /gene="hppD"
                     /locus_tag="VLF16_08200"
                     /EC_number="1.13.11.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011912059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003868 - 4-hydroxyphenylpyruvate
                     dioxygenase activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylpyruvate dioxygenase"
                     /protein_id="HSX70903.1"
                     /translation="MNAVAKIDQHNPIGTDGFEFVEFTAPTAEGIEQLRQLFSAMGFT
                     ETAKHRSKQVWLFQQNDINFVLNGSPTGHVRAFGEKHGPSACAMAFRVKNAAQAAAYV
                     EQQGATLVGSHANFGELNIPCVEGIGGSLLYLVDRFGDKTIYDVDFEYIEGRKPGDNA
                     VGLQQIDHLTHNVKRGQMDVWSGFYERIANFREIRYFDIEGKLTGLFSRAMTAPCGKI
                     RIPINESADDKSQIEEFIREYEGEGIQHIAMSTDDIYETVRRLRANGVDFMSTPDTYY
                     EKVDTRVAGHGEPTATLRDLNILIDGAPGDDGILLQIFTNTVIGPIFFEIIQRKGNQG
                     FGEGNFKALFESIEEDQVRRGVIKAEE"
BASE COUNT          423 a          732 c          703 g          336 t
ORIGIN      
        1 gcacggcgag ggcggcgcgg accgtatcag tggcggcaac ggcgacgacg tcatccacgg
       61 cgattcgtgt tggcagccca gcggcgacga ccgcctctcc ggcaacgctg gtgatgaccg
      121 tttgtacggc ggctggggca acgacctgct gcgcggcggt gccggcgccg accacctgga
      181 cggtggggag ggccaggaca ccgccgacta cgccgatgcc gcgtcgcgcg tctgggtccg
      241 tctcgattcg ctgaccgccc tggtggacaa cagcgaggcc gatggcgatc tgctgctgaa
      301 catcgagaac ctgggcggca gccgattcga cgacgacctg cgcggcaacc agggcgacaa
      361 ccgcctccac ggccgtgacg gcgacgaccg gctgatcggc ctgggcggca gcgatcgcct
      421 gtacggcggg gccggcgacg attggctgtt cggtggcgtg agcagcgtcg aggcggatgg
      481 caacgactac ctaagcggcg gcgagggccg ggacaccttc caggttcgcc taagcatccg
      541 ggagccggat tcgggcggct ttctggatgc cgacttcggt accgatacga tcctggattt
      601 caatccccag gaagaccttc tccagttcgt cgcctccatc agcgccttca gtcagctgaa
      661 catcagcgag caccagagcg cggccgggac cggcaccctg atcgaggcga acaaccacag
      721 caaggtgttc ctgctcggcg tggtggccga tcaactgaac gaggcgaaca tgcagcacat
      781 ccaggcatga cgagccgtag tggcgcgggc cagggaacgg cctgcgagcg agtggcagct
      841 ctttgcaccg ccttggcaag aattccttac gcagtttcga gtgcatctgg gtggccggcg
      901 gcgctgtaag gaaaacttgc cgaggccctg ggtgccgagc acggcggcga ctgttgcggc
      961 ggcttgtcgc agggccgccg cgcggttgtg atgaggtcat ccacccgtgc cacagcgagc
     1021 acggacgacc gcccacaaca acaatcatgg aggccggatg aacgccgtgg ccaagatcga
     1081 tcagcacaac cccatcggaa ccgacggttt cgagttcgtc gaattcaccg cccccaccgc
     1141 cgagggcatc gagcagctgc gccagctgtt cagcgccatg ggcttcaccg aaaccgccaa
     1201 gcaccgctcc aaacaggtct ggctgttcca gcagaacgac atcaacttcg tgctcaacgg
     1261 cagccccacc ggccacgtgc gcgccttcgg cgagaagcac gggccgagcg cctgcgccat
     1321 ggccttccgg gtgaagaacg cggcccaggc ggccgcctat gtcgagcagc agggcgccac
     1381 cctggtcggc agccacgcca acttcggcga gctgaacatc ccttgcgtcg agggcatcgg
     1441 cggctcgctg ctgtatctgg tggaccgctt tggcgacaag accatctacg acgtcgactt
     1501 cgagtacatc gagggccgca agcctggcga caacgccgtc ggcctgcagc agatcgacca
     1561 cctgacccac aacgtcaagc gcgggcagat ggatgtctgg tccggcttct acgagcgcat
     1621 cgccaatttc cgcgagatcc gctacttcga catcgagggc aagctcaccg gcctgttctc
     1681 ccgcgccatg accgcgccct gcggcaagat ccgcatcccg atcaacgagt cggccgacga
     1741 caagtcgcag atcgaggaat tcatccgcga gtacgagggc gagggcatcc agcacatcgc
     1801 catgagcacc gacgatatct acgagacggt gcgccgcctg cgcgccaacg gcgtggactt
     1861 catgtccacc ccggacacct actacgaaaa ggtcgacacc cgcgtggccg gccatggcga
     1921 gccgaccgcc actctgcgcg acctgaacat cctcatcgat ggcgcccccg gtgatgacgg
     1981 catcctgctg cagattttca ccaacacggt gatcggcccg atcttcttcg agatcatcca
     2041 gcgcaagggc aaccagggct tcggcgaggg caacttcaag gccctgttcg aatccatcga
     2101 agaggaccaa gtccgtcgtg gcgtgatcaa ggccgaggaa tgatgagccc cgtccgtagg
     2161 gtgcgccgcg cgcaccatga aggcctcgtt atcc
//
LOCUS       DATIHC010000500         1882 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43410, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000500 DATIHC010000000
VERSION     DATIHC010000500.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1882
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43410"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..768
                     /gene="amn"
                     /locus_tag="VLF16_08205"
     CDS             <1..768
                     /gene="amn"
                     /locus_tag="VLF16_08205"
                     /EC_number="3.2.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008714 - AMP nucleosidase activity
                     [Evidence IEA];
                     GO_process: GO:0046033 - AMP metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AMP nucleosidase"
                     /protein_id="HSX70904.1"
                     /translation="VLPGNVVIERGMQEGEMQAILEGVIWHRYQMPAYHLIANDGHGI
                     TLVNIGVGPSNAKNITDHLAVLRPHCWLMIGHCGGLRQSQTIGDYVLAHAYMRRDGIL
                     DRVLPPNIPIPALAEVQQALQEAAATITGDQGEALKKRLRTGTVLTYDDRNWELHWAH
                     ERPLINLSRAVAVDMESGTIAAQGYRLRVPYGTLLCVSDKPLHSEIKLPGSATGFYQR
                     AVNQHLAIGIAALDLLRCQLDSLHSRKLRSFDEPPFR"
     gene            complement(948..1427)
                     /locus_tag="VLF16_08210"
     CDS             complement(948..1427)
                     /locus_tag="VLF16_08210"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015634381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSX70905.1"
                     /translation="MSELFHWRRNPTWHLGAVDRTDRPRLLEVWEAAVRATHHFLAEE
                     DIQFYRRMIGEQYFDLVRLTCLRDAEGRVQGFSGTAEDRLEMLFVDPAAHGRGFGKAL
                     LHDAIERHGVRLVDVNEQNPGAVAFYLSQGFEQIGRSPLDGADRPFPLLHLRLRESA"
     gene            complement(1424..>1882)
                     /locus_tag="VLF16_08215"
     CDS             complement(1424..>1882)
                     /locus_tag="VLF16_08215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HSX70906.1"
                     /translation="LNAWGCEVTACTSSLSKQDEAKRLGAHKVVASTDSAALKGIAGT
                     LDFLLVTASADLDWNAMLATLRGKGRLHFVGIVPSAIPTHVFSLIPQQKSLSGSPVGS
                     PKTMATMLEFCARHQILPQVEQFPMSQVNAALDHLRAGKARYRVVLDASQ"
BASE COUNT          303 a          637 c          663 g          279 t
ORIGIN      
        1 gtgttgccgg gcaacgtggt gatcgagcgg ggcatgcagg aaggcgagat gcaggcgatc
       61 ctcgaagggg tgatctggca ccgctaccag atgccggcct accacctgat cgccaatgac
      121 ggccatggca tcaccctggt caacatcggc gtcggcccgt ccaacgccaa gaacatcacc
      181 gaccacctgg ccgtgctgcg cccgcactgc tggctgatga tcggccactg cggcggcctg
      241 cggcagtcgc agaccatcgg cgactacgta ctggcccacg cctacatgcg ccgcgacggc
      301 atcctcgacc gggtgctgcc gccgaacatt ccgattccgg ccctggccga ggtgcagcag
      361 gccctgcagg aggcggcggc gaccatcacc ggcgaccagg gcgaggcgct gaagaagcgc
      421 ctgcgcaccg gtaccgtgct gacctacgac gaccgcaact gggagctgca ctgggcccac
      481 gagcggccgc tgatcaacct gtcgcgcgcg gtggcggtgg acatggagag cggcaccatc
      541 gccgcccagg gttatcgcct gcgggtgccg tacggcaccc tgctgtgcgt gtcggacaag
      601 ccgctgcaca gcgagatcaa gctgcccggc tcggccaccg gcttctacca gcgcgcggtg
      661 aaccagcacc tggcgatcgg catcgccgca ctggatctgc tgcgctgcca gctggactcg
      721 ctgcattcgc gcaagctgcg cagcttcgac gaaccgccgt tccgctgaga cgaaggggtg
      781 tgggcgcttg gctggcggcg ccagtggtgc gcacggcgca ccctacggct gctggttcac
      841 caccccttcg ctacgccgac cagatgcgca caggcgcagc accgaagggt gcgccatgcg
      901 caccaggcgg atttgaacgg cgttcgacag gccgagccca cttcgcctca agcgctctcg
      961 cgcaggcgca gatgcagcag cgggaagggc cggtccgcgc cgtccagggg cgagcggccg
     1021 atctgttcga agccctggct gaggtaaaag gctaccgcgc cggggttctg ctcgttgacg
     1081 tcgaccaggc gcacgccgtg ccgctcgatg gcgtcgtgca gcagcgcctt gccaaagccg
     1141 cggccgtggg cggcggggtc gacgaagagc atctccaggc gatcctcggc ggtaccggag
     1201 aagccctgca cgcggccttc ggcatcgcgc aggcaggtca ggcgcaccag gtcgaaatac
     1261 tgctcgccga tcatccgccg gtagaactgg atgtcctcct cggccaggaa gtggtgggtg
     1321 gcgcgcacgg ccgcctccca cacctccagc aggcgcgggc ggtcggtacg gtcgaccgcg
     1381 cccaggtgcc aggtcgggtt gcggcgccag tggaacagtt cgctcattga ctggcgtcca
     1441 gcaccacgcg gtaacgcgcc ttgccggcac gcaggtggtc cagcgcggcg ttcacctggc
     1501 tcatggggaa ctgctcgacc tgcggcagga tctggtggcg cgcgcagaac tcgagcatgg
     1561 tcgccatggt tttcggcgag cccaccggcg agccggacag gctcttctgc tgcgggatca
     1621 ggctgaacac gtgggtgggg atggcactcg gcacgatgcc gacgaagtgc aggcgaccct
     1681 tgccgcgcag ggtggcgagc atggcgttcc agtccaggtc ggcgctggcg gtgaccagca
     1741 ggaagtcgag ggtgccggcg atgcccttga gcgccgcgct gtcggtggag gccaccacct
     1801 tgtgcgcgcc caggcgcttg gcctcgtcct gcttgctcag cgaggaggtg cacgcggtga
     1861 cctcgcagcc ccaggcattg ag
//
LOCUS       DATIHC010000501         2538 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34101, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000501 DATIHC010000000
VERSION     DATIHC010000501.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2538
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34101"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1443)
                     /locus_tag="VLF16_08220"
     CDS             complement(<1..1443)
                     /locus_tag="VLF16_08220"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011059646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HSX70907.1"
                     /translation="MDWLGLRFFTAVPDGAQLLLDCSHSLELVVLSYLVACVAGYATL
                     SFAERAGHAERPAARRNWCAVGALSLGVGVWGMHFIAMLAFQAPVAIRYDLPTTVASL
                     LAVILAALLAMPGLAESNPSLRQRLLSALCIGLGIALMHYSGMAAMRSEAQIYYRPGL
                     FALSVVIAIVASLAALQLSLFFRGREGLLHQLLRIAASLVMGGAIVSMHFTGMWAMEL
                     IVPLGTPLELQSPGNPKQLGVSIGLIALLAIGGGLGAAWADRKLQHKERDLLRVNSLL
                     NQLNQARASLQQAAHYDPLTNLLNRRSFNEVFAEKLRSHAQQGQALALMFLDIDHFKR
                     INDSLGHDAGDQLLKEVAERIRHTLRDQDVIARFGGDEFCILLSLGRIEEARHLAQRI
                     MARMKKPITLARRQMVMTTSVGIAIYPRDGETCEELLKHADLALYQSKGSGRNAVHFF
                     SEHLRNKASMELELEEELRQALKKDRGLVLH"
     gene            1646..1957
                     /locus_tag="VLF16_08225"
     CDS             1646..1957
                     /locus_tag="VLF16_08225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF485 domain-containing protein"
                     /protein_id="HSX70908.1"
                     /translation="MNDSLYQRIEQNPRFKELVAKRDRFAWTLSAIMLALYVAFILLI
                     AFEPQVLGTRISADSPMTLGIPLGVGLILSAFVLTGIYVKRANGEFDRMNQEILDEVQ
                     K"
     gene            1954..>2538
                     /gene="actP"
                     /locus_tag="VLF16_08230"
     CDS             1954..>2538
                     /gene="actP"
                     /locus_tag="VLF16_08230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251924.1"
                     /note="member of the sodium:solute symporter family;
                     cotranscribed with the acs gene which encodes acetyl
                     coenzyme A synthase; mutations affect acetate uptake;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation acetate symporter"
                     /protein_id="HSX70909.1"
                     /translation="MIARILSAIGLMALAPTLWAAGALEGEVQRQPLNMAAIVMFVAF
                     VGFTLYITYWASKRSKSAADFYTAGGGITGFQNGLAIAGDYMSAASFLGISALVFASG
                     YDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASFRLKQKEIRTLSACGSLVVV
                     AFYLIAQMVGAGKLIELLFGLDYHVAVILVGILMV"
BASE COUNT          429 a          824 c          831 g          454 t
ORIGIN      
        1 gtgcagcacc aggccacggt ctttcttcag cgcctggcgc agctcttcct ccagctccaa
       61 ctccatgctc gctttgttgc gcaggtgctc gctgaagaag tgcacggcgt tacggccgct
      121 gcccttggac tggtacagcg ccaggtcggc gtgcttgagc agctcctcgc aggtctcgcc
      181 gtcgcgcggg tagatggcga taccgacgct ggtggtcatc accatctgcc ggcgggccag
      241 cgtgatcggc ttcttcatgc gcgccatgat gcgctgggcc aggtgacggg cctcctcgat
      301 gcggccgagg ctgagcagga tgcagaactc gtcgccgccg aaacgggcga tcacgtcctg
      361 gtcgcgcagg gtatggcgaa tgcgctcggc cacttccttg agcaactgat cgccggcgtc
      421 gtggccgagg ctgtcgttga tccgcttgaa gtgatcgatg tcgaggaaca tcagtgccag
      481 cgcctggcct tgctgggcat ggctgcgcag cttctcggcg aacacctcgt tgaacgagcg
      541 gcggttgagc aggttggtca gcgggtcgta gtgggccgct tgctgcagtg aggcgcgcgc
      601 ctggttgagc tggttgagca gcgaattgac tcgcagcagg tcgcgctcct tgtgctgcaa
      661 cttgcgatcg gcccaggccg caccgaggcc accgccgatg gcgagcaggg cgatcaggcc
      721 gatgctcacg ccgagctgct tggggttgcc ggggctttgc agctccagcg gcgtgcccag
      781 cggcactatc agttccatcg cccacatgcc ggtgaagtgc atggagacga tggccccgcc
      841 catcaccagg ctggcggcga tacgcaacag ttggtgcagc aggccttcgc ggccgcggaa
      901 gaacagcgac agctgcagcg cggcaagact ggcgacgatg gcgatgacca ccgacagggc
      961 gaacagcccc gggcgatagt agatctgcgc ctcggagcgc atggcagcca tgccgctgta
     1021 gtgcatcagc gcgatgccca ggccgatgca cagcgccgac agcaggcgct ggcgcaggga
     1081 agggttggat tcggcgaggc cgggcatggc cagcagtgcg gcgaggatga ccgccagcag
     1141 cgaggccacc gtggtcggca ggtcgtagcg gatcgccacc ggcgcctgga aggcgagcat
     1201 cgcgatgaag tgcatgcccc agacgccaac gcccaggctc agcgcgccga ccgcgcacca
     1261 gttgcgccgt gccgcggggc gctccgcgtg gccggcgcgc tcggcgaagc tgagggtggc
     1321 gtagccggcg acgcaggcga cgagatagga cagtacgacc agctcgagcg agtggctgca
     1381 gtccagcagc agttgtgcgc cgtcgggcac ggcggtgaaa aaacgcagac ccagccaatc
     1441 catagcaggt gacctcgggg gcagagtgca gggacttcag gctcaggaaa aacctgagta
     1501 tagacggccg taccaacagc aagttcaggc ccgccgcggt gcctaagact ttggtcgcgg
     1561 ttacgactaa ggtcgtctgt ctcgcctgcc ttgtcgctcg cagagtggcc ttcacccgta
     1621 actcgtgctg tggaggacaa caacaatgaa cgacagcctg tatcagcgga tcgagcagaa
     1681 tccgcgcttc aaggagctgg tcgccaaacg cgatcgcttc gcctggacac tctccgcgat
     1741 catgctcgcc ctgtatgtgg cgttcatcct gctcatcgcc ttcgaacccc aggtgctcgg
     1801 cacccgcatc agcgccgatt cgccgatgac cctgggcatt ccgctgggcg tcggcctgat
     1861 cctctcggcc ttcgtgctga ccggcatcta cgtcaagcgc gccaatggcg aattcgaccg
     1921 catgaaccag gaaatcctgg acgaggtgca gaaatgatcg cacgcatcct ttccgccatc
     1981 ggcctgatgg cgctcgcccc gaccctgtgg gccgccggcg ccctcgaggg cgaggtacag
     2041 cgccagccgc tgaacatggc cgccatcgtc atgttcgtcg ccttcgtcgg cttcaccctc
     2101 tacatcacct actgggcctc caagcgcagc aagtcggcgg ccgatttcta caccgccggt
     2161 ggcggcatca ccggcttcca gaacggcctg gcgatcgccg gtgactacat gtcggcggcg
     2221 tccttcctgg gtatttccgc cctggtattc gcctccggct acgacggcct gatctactcg
     2281 atcggcttcc tggtcggctg gccgatcatc ctcttcctga tcgcggaacg cctgcgcaac
     2341 ctcggcaagt acaccttcgc cgacgtcgcc tcgttccgcc tcaagcagaa ggaaatccgc
     2401 accctgtccg cctgcggttc gctggtggtg gtggccttct acctgatcgc gcagatggtt
     2461 ggcgccggca agctgatcga gctgctgttc ggcctggact accacgtcgc ggtgattctg
     2521 gtcggtatcc tgatggtc
//
LOCUS       DATIHC010000502         2389 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_23993, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000502 DATIHC010000000
VERSION     DATIHC010000502.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2389
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23993"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..378
                     /locus_tag="VLF16_08235"
     CDS             <1..378
                     /locus_tag="VLF16_08235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70910.1"
                     /translation="RDVAVLKTHETGLQRLLQGALRRLAPANPNAETEQAAATVIELE
                     SAPPFPPIPLTVVSGGKPAMRWATAQQALAARAEHQRELAGLSPLGEQIIAAGSGHFP
                     QFTEPQCVVDAIRETARRAGLLA"
     gene            complement(375..1208)
                     /locus_tag="VLF16_08240"
     CDS             complement(375..1208)
                     /locus_tag="VLF16_08240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016494578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSX70911.1"
                     /translation="MPNRLCANACPPALIYVSSRRYIYLGQTQLPIRDLHSAAASLVV
                     CLQGSVSFRAAGARRWVSTRSLLIPAGSRICIDNQGAVFAACYLDAARGDCSVLRRRM
                     NAMSDGICHDISDESLLIAELIRLRGDAPDFAEAQRRMQALILQGATDAGSDPRIAHV
                     IERLRNTASLNIPVGALAEEVGLSESGLIRLFGLQVGVPLRRHRLWYRLIDFLLLVLK
                     GTPTPLAIRRSGFTDAAHLSRCYSGFFGVNLSYAFSKNTHVRYIAAPSAASALVVGRP
                     S"
     gene            1708..>2389
                     /locus_tag="VLF16_08245"
     CDS             1708..>2389
                     /locus_tag="VLF16_08245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70912.1"
                     /translation="MLSAPGPSAPCSNCTRGPNPTEASLKSDRGPFTTARFSVSGFLK
                     GFGDSTVYYPTNTTGRMGAIAVIPGYLSYESSIEWWGPRLASHGFVVMTMNTTTIYDQ
                     PDSRATQLSKALDYLIAQSNTSSSPIYNKIDSTRLGAIGWSMGGGGSLKLSTQRSLNA
                     IIPQAPWYAGSNSFNTIKTPALILACSADTVAPVAVHASPFYNQIPGSTPKAFLEIYG
                     GSHFCANSG"
BASE COUNT          486 a          790 c          715 g          398 t
ORIGIN      
        1 cgagatgtgg ccgttctgaa aacccacgag accggactgc agcgcctgct gcaaggcgcg
       61 ctgcgccggc tcgcgccagc caacccgaac gccgagaccg agcaggctgc ggccaccgtc
      121 atcgaactgg aatcggcgcc accctttccg cccataccgc ttaccgtcgt cagcggcggc
      181 aagccggcga tgcgctgggc cacggcgcag caggcgctgg cggcgcgggc cgagcatcaa
      241 agggaactgg ccggattgtc accgctgggc gagcagatca tcgctgccgg aagcggccat
      301 tttccgcagt tcaccgagcc gcagtgcgtg gtggacgcta tccgcgaaac cgctcgacgc
      361 gccggcctgc tggcctagct gggacggccc accaccaagg cgctggcggc cgacggagcg
      421 gcgatgtagc gcacgtgggt attcttcgag aacgcgtagg acaggttgac gccgaaaaag
      481 ccgctgtagc agcgcgacag atgggctgcg tcggtgaagc cggagcgccg gatggccaac
      541 ggcgtgggcg tgcccttcag caccagcagt agaaagtcga tcagccggta ccacagtcgg
      601 tgccggcgta gcggcacgcc cacctgcagg ccgaacaggc ggatcaggcc tgactcggac
      661 aggccaacct cctcggccag tgccccgacc gggatgttca gcgaggcggt attacgcagt
      721 ctttcgatca cgtgggcgat ccgcgggtcg ctgccggcat ccgttgcgcc ctgcaggatc
      781 agggcttgca tgcgccgctg agcctcggcg aagtccgggg catcgccacg caggcggatc
      841 agctctgcga tcaacaggct ctcgtcggaa atatcgtggc agatgccatc gctcatcgcg
      901 ttcatcctgc ggcgcagcac ggagcaatcg cccctggctg cgtccaggta gcaggcggcg
      961 aagacggcgc cctggttatc gatgcagatg cggctgccgg ccggtatcag caggctccgc
     1021 gtcgacaccc agcgccgcgc accagccgca cggaagctca ccgagccctg caggcatacc
     1081 accagcgagg ccgccgccga atgcagatcc cgaatgggca gctgggtctg gccgaggtag
     1141 atataacgcc gactggacac atatatcagc gccggcggac aagcatttgc gcacagtctg
     1201 ttaggcatgg ccattccgat atgcgttcga catcagaaaa cagctcgagc ctcaacaagt
     1261 acttggctcg cgaagttgat gtcaacgcgc caactgcaaa ctcatacccg agtcgaactt
     1321 aggcattaac gagcacagcg acaatcggaa gggtccgcta taagccgctg aaacaggctc
     1381 ttccagaagc aaccatgaca ctccggcgat accgacggaa acgattgagg caggacgtaa
     1441 acgattcgaa acaaacagcc ggcgaatgca ctacagccat acgcgtatca gtcttcggaa
     1501 gtatcttgcg actcggggag tttcttgtat gaactgagcc tgggtagcaa ttgttagtca
     1561 ttgggggcct tgttagtttt cagcgcagtc cgcttgtcct tggcgagctg taggactttc
     1621 tgagaacaat aacgacgagg caaccctatg gaggcatcct ttgctaaagc tgctctgtta
     1681 gtcgcttcac tgctggccag ttcatatgtg ttatcggcgc ctggcccctc cgccccctgc
     1741 agcaactgca cccgcggccc caaccccacc gaagcctcgc tgaagagcga ccgaggaccg
     1801 ttcactaccg cgcgcttctc ggtatcgggc tttctcaagg ggttcggcga cagcacggtg
     1861 tactacccga ccaataccac cggcaggatg ggcgccatcg ccgtcatccc gggctatctg
     1921 tcctacgaga gcagcatcga atggtgggga ccgcgtctgg cctcccatgg cttcgtggtg
     1981 atgaccatga acaccaccac catctacgac cagccggata gccgcgccac ccagttgagc
     2041 aaggctctgg actacctgat cgcccagagc aacaccagca gcagcccgat ctacaacaag
     2101 atcgacagca cccgcctggg cgccatcggc tggtccatgg gcggcggcgg ctcgctcaag
     2161 ctgtctaccc aacgctcgct caatgccatc atcccgcagg ccccctggta tgccggcagc
     2221 aacagtttca acaccatcaa gaccccggcg ctgattctcg cttgcagcgc ggacaccgta
     2281 gcccccgtgg cggtgcacgc ctcgccgttc tataaccaga tccccggctc cacgcccaag
     2341 gcgttcctgg agatctacgg cggctcgcac ttctgcgcca actccggct
//
LOCUS       DATIHC010000503         6909 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_14847, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000503 DATIHC010000000
VERSION     DATIHC010000503.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6909
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14847"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..545
                     /locus_tag="VLF16_08250"
     CDS             <1..545
                     /locus_tag="VLF16_08250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70913.1"
                     /translation="GRLLITTSDTHDPAVTGMAPRGLDPQQLARPTASGFGTGVKAYS
                     SSKLCNLMTALSLSELKEVEERQIAVIAFSPGLTSGSAGRDSSPILRGILQVMMQTVF
                     RIVGLFRPAYIANPPWSSGRSLADFAMGEARLPAGRVYVALVKGKATFPEPSELARDR
                     RAQKQLWNESAIMVGVDCQA"
     gene            542..1795
                     /locus_tag="VLF16_08255"
     CDS             542..1795
                     /locus_tag="VLF16_08255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014338906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HSX70914.1"
                     /translation="MKMHRSHPGSSMAVATERNLRATFISLGACVLACMGLLSACATT
                     RDSRVAVANVSFSDYQRETLRVLETERSFQLADKRSELLWNAPNEWQPATIAGARPKR
                     GILLVHGLGDSPWSFHDLAPQLAAQGFLVRTVLLPGHGTRPEALLNVTAEEWQAVVYA
                     QAQTLEEDVDGPVYLGGFSTGANLVLSYAYGHPEIAGLVLFSPGFKSFPFGWITSLVA
                     RVRPWMVSPSDSIANQTPVRYMNVPTNGYAQFYRTSALAQRLLNRPYEKPVFMVVAQH
                     DSVINTDYLLRVFQSSFTNPRSRLIWYGEKPEGLIDTRRILVRPDRIPELQISQFSHM
                     GLLFSASNALYGSHGSLRICLNSLSKLNTQACERGEPLWYSDWGYSEAGKYHARLTYN
                     PYFDWQNSIMAGVITWHGASSQNMD"
     gene            2137..3033
                     /locus_tag="VLF16_08260"
     CDS             2137..3033
                     /locus_tag="VLF16_08260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010485420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX70915.1"
                     /translation="MKVLLAVAEAESFAGGAKLMGMSPPSVTRVIAGLENRLGTLLLA
                     RSTRSLRLTEAGRRYVEDCKRILLDLEEADELAAGSSSRVRGNLTVTAPVMFGELFLI
                     PLITEYLAEHPEVSINALLVDRLVSMVDEGLDVAVRIGKLPDSGLQAIRVGAIRPVIC
                     AAPAFLERAGRPQVPKDVLNAPVVMSSASNLLTDWQFDGPQGALTLHPKPRLLVSSNQ
                     AAINAARMGWGLTRVLSYQVAELVAKGELEIVLEDYETAALPVHVLYQGSKRISANVR
                     TFVDFCTRRFQQDPALQSATEA"
     gene            3038..3940
                     /locus_tag="VLF16_08265"
     CDS             3038..3940
                     /locus_tag="VLF16_08265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX70916.1"
                     /translation="MSRYRQMQVFDAVVQAGSLAAAARQQELSVATIMRTIGALEARL
                     NATLLIRGPRGVTLSPAGEQFALSCRQILEQTEEAERSAVGVHTCSGGQLTLALPLLM
                     DHQVLTPIALAYLDAFPDVQLATRASHGTPRLLEEGIDVALVVGQLANSSEFAQPLGE
                     VRPIVCAAPGYLAQWGRPQTLDDLKAHRAVIASAPGYDAPWQFRCERTTRLVKPTPVL
                     TCTTQRAAIHAATLGLGLIRCMSYEAHAELQSGLLEPVLQPFASAGVPAQLIYRHGRR
                     AEARVRSFIDFATPRLRAHPAFCG"
     gene            4089..4715
                     /locus_tag="VLF16_08270"
     CDS             4089..4715
                     /locus_tag="VLF16_08270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008570036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HSX70917.1"
                     /translation="MTHAIKLYRHPLSGHAHRVELMLSLLNLPTELVFVDLANGAHKK
                     AEYLAINAFGQVPVIDDNGTLLSDSNAILVYLAKQYGSGSWQLNDPLHEARVQRWLSV
                     AAGQVAYGPAAARLITVFGASFNADEVITRAHVLLKVMETELAASPFLAGREPSIADV
                     ANYSYIAHAPEGNVSLEAYPNVRAWLQRIEALPGFVPMQRTAAGLQAS"
     gene            4766..6820
                     /locus_tag="VLF16_08275"
     CDS             4766..6820
                     /locus_tag="VLF16_08275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009682585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HSX70918.1"
                     /translation="MDHLPKHRKSPWHAGERQLQEKVYASERMEVIGQKVIRDYMPDQ
                     HREFYQQLPFMVVGAVDADGRPWATLLEGPEGFVTSADPQHLFLASQLDAQDPAAAGL
                     QAGNAIGMLGIELHTRRRNRINGMIQQASAAGFAVEVEHSYGNCPKYIQARSYTRVTV
                     PANGKPLRQDFSGLDDYSSALIRAADTFFVASYVEHDDRRRSVDVSHRGGRAGFVRVE
                     GNRLTIPDYAGNLFFNTLGNLQANPIAGLLFVDFASGDMLQVSGRTELLLDSPLTKAF
                     EGAERLWTVEVEQVVLRPGAVGIRWQFHDYAPTSLATGTWAETEERVRQYEQRRQWQQ
                     WRVARVQQESSDIRSLFLAPLDNASVTFAAGQHLPMRLQAGDEALVRTYSVSSAPSDG
                     HIRISVKLQGKASRHLHEHVQVGDLLEVRSPLGSFTLVDETERPVVLIGAGVGITPMV
                     SMARELVAQNRQHQRARHIHLFHSARSLAELPFREELSALQQQAAGLLHIHRALSSPG
                     AKAQLERDYQLAGRLSFAQVKARLPLDDYDFYLCGPSGFLQDMYDGLRGLNIPDQRIH
                     AEAFGPSALRRSQSEQPPSLEQPPAATVPVPVYFSASATEARWKPDSGSLLELAESRG
                     LNPEFSCRGGSCGTCAARLVSGAVHYPNPPAQLPDGDKVLICCAVPAQTDDSPQPLVL
                     DL"
BASE COUNT         1229 a         2326 c         2143 g         1211 t
ORIGIN      
        1 gtggtcgcct tctcattacc actagcgata cgcacgaccc ggcggtaacc ggcatggcgc
       61 cacgggggct cgatccacag cagctggctc gtcctacggc tagcggcttt ggaacgggtg
      121 tgaaggcgta ctcctcctcc aaactgtgca atctcatgac ggcgctatcg ctcagcgaac
      181 ttaaggaagt cgaagagcgc caaattgccg tgattgcatt cagtcccggt ttgaccagcg
      241 gtagcgctgg ccgggacagc tcgccgattc ttcgcggcat cctccaggtc atgatgcaaa
      301 ccgtttttcg tatcgttggc ctcttccgtc ctgcctatat cgctaatcca ccttggagct
      361 cagggagatc gcttgctgat ttcgcgatgg gagaggcccg ccttcctgca ggccgagtct
      421 atgttgccct ggttaaaggc aaggcaacgt tcccggagcc gtctgagttg gctcgcgacc
      481 ggcgtgctca gaagcagctg tggaatgaaa gtgcaatcat ggtcggggtc gactgccaag
      541 catgaaaatg catcgctctc atcccggctc ttcgatggcc gtggccactg agcgcaatct
      601 gcgcgcgacc tttatttcgc tcggggcatg tgttctggct tgcatggggc tgctgagcgc
      661 ctgtgccacg acgcgggatt ccagagtcgc tgtcgccaat gtgagcttct cggattacca
      721 gcgcgagacg ctgagagtgc tagaaacaga gcgcagcttt cagctcgctg acaagcgatc
      781 agagctgctc tggaatgcac cgaatgaatg gcaaccggcc acgattgctg gagctaggcc
      841 gaagagggga atactgctcg tgcacggctt aggggactcc ccatggtctt ttcacgacct
      901 cgcgccacag cttgcagccc aaggatttct cgtccggaca gtattgctgc cgggccatgg
      961 cactcgtccc gaagcactgc ttaacgtaac ggcggaagaa tggcaggcag tggtgtatgc
     1021 gcaggcccag acgcttgagg aagatgtaga tgggccggtt tatttaggtg gattttcaac
     1081 cggtgcaaac ctcgttctta gttacgcgta tggccatcct gagatagccg ggttggtgct
     1141 gttttctccc ggcttcaaaa gcttcccttt tggatggata acttcgctgg tagcacgggt
     1201 aaggccttgg atggttagtc ccagcgactc aatagctaat caaaccccgg tgcgttacat
     1261 gaacgtgccg actaatggat acgctcagtt ctatcgaacc agtgctctcg cgcagcgttt
     1321 gctgaatcgc ccctacgaaa agccggtctt catggtcgtc gctcagcacg actcggtgat
     1381 caatacggac tatttactac gagttttcca gagcagtttc acaaaccctc gaagccgcct
     1441 catctggtat ggagagaagc ctgaggggct tatcgataca cgccgaatcc tggttcgccc
     1501 tgacagaatt cctgagttgc agatcagcca gttctctcac atgggactgc ttttctctgc
     1561 gtcgaatgct ctatatggca gccatggaag cttgcgcatt tgcttgaaca gcttatccaa
     1621 actcaatact caggcgtgcg aacgtggcga accactctgg tattcggact gggggtatag
     1681 cgaggcgggt aagtatcacg cgcgacttac atacaacccc tatttcgatt ggcagaactc
     1741 catcatggca ggcgtcatta cctggcatgg tgcttctagc cagaacatgg attaggcggt
     1801 ctcgtcaacg tctgcttctg gccgattctg ttgaaaaact cggtgtgcga cagagctgct
     1861 ttgctcgtag cctgaaaaac gtacaaatcg agcgactcta cgcgaaatct agagcagatc
     1921 gaccagcgaa acgtttcaga tttcagcctc agctacgcac tttcggcgaa gaaaatcgtc
     1981 gagggagttt ttcaacagaa tcggccgtta gccgccctta gccaaaactc cgagcagcga
     2041 atactcaccc gtactcctgg ccaccacctt caaacgctaa gctgtaccac ccaacgcaat
     2101 ctacgactgg cggtgagttt ggacaggttt caggagatga aggtgttgtt ggcggtcgcc
     2161 gaggcggaga gctttgccgg gggcgccaag ctgatgggca tgtcgccgcc gagcgtgacc
     2221 cgggtgatcg cggggctgga gaatcgcctc ggcacgctgc tgctggcccg cagcacgcgc
     2281 agcctgcgcc tgaccgaggc gggccggcgt tatgtcgagg actgcaagcg catcctgctc
     2341 gatctggagg aggccgacga gctggccgcc ggcagcagca gccgcgtgcg cggcaacctg
     2401 accgtgacgg cgccggtgat gttcggcgag ctgttcctga ttccgctgat caccgagtac
     2461 ctcgcggagc acccggaagt gtcgatcaac gcgctgctgg tggatcgcct ggtgagcatg
     2521 gtcgacgagg gcctcgatgt ggccgtgcgt atcggcaagc tgcccgacag cggcctgcag
     2581 gcgatccggg taggcgccat ccgcccggtg atctgcgccg ccccggcctt tctcgagcgt
     2641 gcagggcgcc ctcaggtgcc caaggatgtg ctgaacgcgc ccgtcgtcat gtcctcggcc
     2701 agcaatctgc tcaccgactg gcagttcgat ggcccgcagg gtgccctcac cttgcacccc
     2761 aagccgcgcc tgctggtcag ttccaaccag gccgcgatca acgccgcgcg catgggctgg
     2821 gggctgacgc gagtgctgtc gtatcaggtc gccgagctgg tggccaaggg cgagctggag
     2881 atcgtgctcg aggactacga aaccgcggcg ttgccggtgc acgtgctgta ccagggcagc
     2941 aagcgcatct cggccaacgt gcgcaccttc gtcgacttct gcacccggcg ctttcagcag
     3001 gacccggcgc tgcagtcggc gacggaggcc tgagggcatg agccgctacc ggcagatgca
     3061 ggtgttcgat gccgtggtgc aggccggcag cctggcggcc gccgcgcgcc agcaggagct
     3121 gtcggtggcg accatcatgc gcaccatcgg cgccctggag gcgcgcctca acgccacgct
     3181 gctgattcgc gggccacgcg gggtgaccct gagccctgcc ggcgagcagt tcgccctgag
     3241 ttgccggcag atcctcgaac agaccgagga ggccgaacgc tcggcggtgg gcgtgcatac
     3301 ctgctcgggc ggtcagctga cgctggcact gcccctgctg atggaccatc aggtgctcac
     3361 gcccatcgcc ctcgcctacc tggacgcctt ccccgacgtg cagctggcca cccgcgccag
     3421 ccacggcacg cccaggctgc tggaggaagg catcgacgtg gcgctggtgg tcggccagtt
     3481 ggccaactcg tccgagtttg cccagcccct gggcgaggtg cggccgatcg tctgtgccgc
     3541 acccggctac ctggcgcaat ggggacgacc gcaaacgctg gatgacctca aggcccaccg
     3601 cgcggtgatc gcctcggcgc ccggctacga cgcaccctgg cagttccgtt gcgaacgcac
     3661 cacgcgcctg gtcaagccca cgccggtgct gacctgcacc acccagcgcg cggccatcca
     3721 cgccgccacc ctgggcctgg ggctgatccg ctgcatgagc tacgaagccc atgccgagct
     3781 gcagagcggc ctgctcgagc cggtgctgca gcccttcgcc agcgcgggcg tgccggcgca
     3841 gctgatctac cgccacggcc gccgcgccga ggcgcgggtg cgcagcttca tcgacttcgc
     3901 caccccgcgg ctgcgcgccc accccgcctt ctgcggctga cctacgcgcc ccactctttc
     3961 ggaaaacgga attatggatt gcccggcgtg gtgattctgc ttgctcctgc ataggcgcag
     4021 catggctcca acagcgcaat accccgaaca gcgcgctggc cacccacaca acctacggag
     4081 ccacgatcat gacccacgcc atcaaactct atcgccaccc gctgtccggc catgcccatc
     4141 gcgtcgagct gatgctctcg ctgctcaacc tgcccaccga gctggtgttc gtcgacctgg
     4201 ccaacggtgc gcacaagaag gccgagtacc tggccatcaa cgccttcggc caggtgccgg
     4261 tgatcgatga caacggcacc ctgctcagcg actccaacgc gatcctggtc tacctggcca
     4321 agcaatacgg cagcggcagc tggcagctca acgacccgct gcacgaggcg cgcgtacagc
     4381 gctggctgtc ggtggccgcc ggccaggtcg cctacggccc ggctgccgca cggctgatca
     4441 cggtgttcgg cgcgtccttc aacgccgacg aggtcatcac ccgcgcccat gtcctgctca
     4501 aggtgatgga gaccgaactg gcggccagcc cgttcctcgc gggccgcgag ccgagcatcg
     4561 ccgatgtcgc caactacagc tacatcgccc atgccccgga aggcaacgtg tcgctggagg
     4621 cctacccgaa cgtgcgtgcc tggctgcaac gcatcgaagc cctgcccggc ttcgtgccca
     4681 tgcaacgcac cgccgccggt ctgcaggcca gctgagtcga cccggctgcc gggctcttcc
     4741 ggcagctctt tcgaggagcg ccgtcatgga ccatctaccc aagcaccgta agtcgccctg
     4801 gcatgccggt gaacgccagc tgcaggaaaa ggtgtacgcc agcgagcgca tggaagtgat
     4861 cgggcagaag gtcatccgcg actacatgcc cgaccagcac cgcgagttct accagcagtt
     4921 gccgttcatg gtggtcggcg cggtggatgc cgacggtcgc ccctgggcca ccctgctcga
     4981 agggccggaa ggcttcgtca cctcggccga tccgcagcac ctgttcctcg ccagccagct
     5041 cgacgcgcag gacccggccg ccgccggcct gcaggcgggc aacgccatcg gcatgctcgg
     5101 catcgagctg catacacgcc ggcgcaaccg catcaacggc atgatccagc aggcctcggc
     5161 cgccggcttc gccgtggaag tcgagcactc ctacggcaac tgccccaagt acatccaggc
     5221 acgctcctac acccgtgtca ccgtgccggc aaacggcaaa ccgctgcgcc aggacttcag
     5281 cggcctggac gattacagca gcgcgctgat ccgcgccgct gacaccttct tcgtcgccag
     5341 ctacgtcgag catgacgacc gccgccgctc ggtggacgtc tcccaccgtg gcggccgcgc
     5401 cggtttcgtc agggtcgagg gcaaccgcct gaccattccc gactacgccg gcaacctgtt
     5461 cttcaacacc ctgggcaacc tgcaggccaa cccgatcgcc ggcctactgt tcgtcgactt
     5521 cgccagtggc gacatgctgc aagtcagcgg gcgcaccgag ctgctgctcg acagcccgct
     5581 gaccaaggcc ttcgagggcg cggagcggct gtggacggtc gaggtcgagc aggtggtgct
     5641 gcgccccggc gccgtgggca tccgctggca gttccacgac tatgcaccga ccagcctggc
     5701 caccggcacc tgggcggaga ccgaggagcg cgtgcgccag tacgagcagc gccggcaatg
     5761 gcagcagtgg cgcgtggcgc gggtgcagca ggagagcagc gacatccgct cgctgttcct
     5821 cgccccgctg gacaacgcca gcgttacctt cgctgccggc cagcatctgc cgatgcgcct
     5881 gcaggccggc gacgaggcac tggtgaggac ctacagcgtt tccagcgcgc cgtccgacgg
     5941 gcatatccgc atcagcgtga agctgcaggg caaggcctcg cgccacctgc acgagcacgt
     6001 ccaggtcggc gatctgctgg aagtgcgcag cccgctgggc agcttcaccc tggtcgatga
     6061 aaccgagcgg ccggtggtgc tgatcggcgc tggcgtcggc atcaccccga tggtctccat
     6121 ggcccgcgag ctggtggcgc agaaccgcca gcaccagcgc gcgcggcaca tccatctgtt
     6181 ccacagtgcc cgcagcctgg ccgagttgcc cttccgcgaa gagctgagcg cgctgcaaca
     6241 gcaggcggcc ggactcctgc atatccaccg cgccctgagc agccccggcg ccaaggcgca
     6301 gctcgaacgt gactaccaac tggccggtcg gctgagcttc gcccaggtca aggcgcgcct
     6361 gccgctggat gactacgact tctacctgtg cggccccagc ggttttctgc aggacatgta
     6421 cgacggcctg cgcggcctca acatccccga tcagcgcatc cacgccgagg ccttcggccc
     6481 ctccgccctg cgccgttcgc agagcgagca gccgccgagc ctggaacagc caccggcggc
     6541 cacggtgccg gtaccggtgt acttctccgc ctcagccacc gaggcacgct ggaagcccga
     6601 cagcggcagc ctgctggagc tggccgaaag ccgtggcctg aaccccgagt tcagctgccg
     6661 tggcggctcg tgcggcacct gcgccgccag gctggtcagc ggcgccgtgc actaccccaa
     6721 tccgccggcg cagttgccgg acggcgacaa ggtgctgatc tgctgcgccg tgccggcgca
     6781 gaccgacgac agcccgcaac ccctggtgct ggatctctga cgaggaggcc gtgacatgaa
     6841 cagaagcgat tcgcctagcc gggaagtgct gccgcccgtg cagtggcacg acgcacccgc
     6901 gtcttcctc
//
LOCUS       DATIHC010000504         3052 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31738, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000504 DATIHC010000000
VERSION     DATIHC010000504.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3052
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31738"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..343
                     /gene="rplD"
                     /locus_tag="VLF16_08280"
     CDS             <1..343
                     /gene="rplD"
                     /locus_tag="VLF16_08280"
                     /inference="COORDINATES: protein motif:HMM:NF012782.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HSX70919.1"
                     /translation="MIAAALRGALSDRARNGRIHVVAELVEGTKPSAKAALAALRGVS
                     DRKNLLVVIERANDVAALSVRNLAGVHVLYADQLNTYDVLVSDDVVFTKAAYDAFVAG
                     KAVAKNEEDAK"
     gene            340..645
                     /gene="rplW"
                     /locus_tag="VLF16_08285"
     CDS             340..645
                     /gene="rplW"
                     /locus_tag="VLF16_08285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006640319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HSX70920.1"
                     /translation="MSAATIKDPRDVVLAPVVSEKSYGLIDEGKYTFLVDPRSNKTEI
                     KLAVEKIFSVKVESINTINRAGKRKRTKFGWGTRKNTKRAIVTLKEGTIDIFGGPLS"
     gene            675..1514
                     /gene="rplB"
                     /locus_tag="VLF16_08290"
     CDS             675..1514
                     /gene="rplB"
                     /locus_tag="VLF16_08290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016293504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HSX70921.1"
                     /translation="MGIRKYKPTTPGRRGSSVADFTEITRSTPEKSLVRPLPKKGGRN
                     NTGKITTRHKGGGHKRQYRLIDFRRHDKDGVNARVAEIEYDPNRTARIALLHYVDGTK
                     RYIIAPNKLSQGDFVEAGANADIKPGNNLPLRNIPVGTVIHAVELRPGGGAKMGRSAG
                     ASIQLVAKEGRFAQLRLPSGEIRNVDVRCRATVGEVGNAEQSNINWGKAGRMRWKGVR
                     PTVRGVAMNPVDHPHGGGEGKTSGGRNPVNPNGQREGRTRRPNKESDKLIVRRRRTGK
                     NKR"
     gene            1527..1808
                     /gene="rpsS"
                     /locus_tag="VLF16_08295"
     CDS             1527..1808
                     /gene="rpsS"
                     /locus_tag="VLF16_08295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HSX70922.1"
                     /translation="MPRSLKKGPFVDQHLFVKVARENEKGTKNVIKTWSRRSMIIPDM
                     LGHTIAVHDGRKHIPVFVTESMVGHKLGEFAPTRTFRGHVKDDRKGKRR"
     gene            1847..2212
                     /gene="rplV"
                     /locus_tag="VLF16_08300"
     CDS             1847..2212
                     /gene="rplV"
                     /locus_tag="VLF16_08300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000387528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HSX70923.1"
                     /translation="MEAKAIARHIRVTPMKARRVVNLVRGLQANEALAILKFAPQAAS
                     EPVFKVVQSAISNARVLADRDGVAFDEGDLIISEAFVDEGPTMKRFQPRAQGRAFQIK
                     KRTSHITVVVATPEKEEAR"
     gene            2213..2845
                     /gene="rpsC"
                     /locus_tag="VLF16_08305"
                     /pseudo
     CDS             2213..2845
                     /gene="rpsC"
                     /locus_tag="VLF16_08305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002633602.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
BASE COUNT          660 a          996 c          906 g          490 t
ORIGIN      
        1 gatgattgct gctgcacttc gcggcgctct gtctgaccgg gcacgcaacg gccgtatcca
       61 cgtcgtcgca gagctggttg aaggcaccaa gccctccgcc aaggctgcac tcgcagcact
      121 gcgcggtgtt tccgaccgca agaacctgct ggtcgtcatc gagcgcgcca acgatgttgc
      181 tgcactgtcc gtgcgcaacc tcgccggtgt tcacgttctg tacgcagacc agctgaacac
      241 ctacgacgtt ctcgtgtctg atgacgttgt cttcaccaag gctgcctacg acgcattcgt
      301 tgccggcaag gcagtggcaa agaatgagga ggatgccaag tgagtgcagc caccatcaag
      361 gatccccgcg acgtcgtgct tgcacccgtc gtgtcggaaa agagctacgg cctgatcgac
      421 gagggcaagt acaccttcct ggtggacccc cggtcgaaca agaccgagat caagctggcc
      481 gtggagaaga tcttctccgt caaggtcgaa tcgatcaaca ccatcaaccg tgccggtaag
      541 cgcaagcgca ccaaattcgg atggggtacc cgcaagaaca ccaagcgtgc gattgtcacc
      601 ctcaaagaag gcaccatcga catcttcggc ggtccgctct cgtagcggag accactttaa
      661 cgaggaaata aattatggga atccgtaaat acaagccgac taccccgggc cgtcgtggct
      721 cgagcgtagc ggacttcacc gaaatcacgc ggtcgacgcc ggaaaagtcg ttggtacgtc
      781 cgctgcccaa aaagggcggc cgtaacaaca ccggtaagat cacgacccgt cacaagggtg
      841 gtggacacaa gcgtcagtac cgtctgatcg acttccgccg ccacgacaag gacggcgtca
      901 acgcccgcgt tgccgaaatc gagtacgatc cgaaccgcac ggctcgcatc gccctcctgc
      961 actacgttga tggcaccaag cgttacatca tcgccccgaa caagctgtcc cagggtgact
     1021 tcgtagaggc aggtgccaac gctgacatca agcctggcaa caacctgccc ctgcgcaaca
     1081 tccccgtggg taccgtcatc cacgcagttg aactgcgtcc gggtggcggc gccaagatgg
     1141 gccgctccgc cggtgcatcc atccagctcg ttgccaagga aggccgcttc gcccagctgc
     1201 gcctgccttc cggcgaaatc cgcaacgttg acgtgcgctg ccgcgcaacc gtcggcgagg
     1261 tcggcaacgc cgagcagtcc aacatcaact ggggcaaggc cggccgtatg cggtggaagg
     1321 gcgtccgccc gaccgtccgt ggtgtcgcca tgaacccggt tgaccacccg cacggtggtg
     1381 gtgaaggtaa gacctccggt ggtcgtaacc ccgtcaaccc gaacggtcag cgggaaggcc
     1441 gcacccgccg ccccaacaaa gagagcgaca agcttattgt tcgtcgccgt cgtactggca
     1501 agaacaagcg ataggagcct ggacacatgc cacgcagcct gaaaaaaggt cctttcgttg
     1561 accagcacct ctttgtgaag gtagccaggg aaaacgaaaa gggcaccaag aacgtcatca
     1621 agacctggtc ccgccgttcg atgatcatcc ccgacatgct cggacacacg atcgccgtac
     1681 acgacggacg caagcacatt ccggtgtttg tcactgagtc gatggtcggg cacaagctcg
     1741 gcgaattcgc tcccacgcgg acattccgcg gccatgtcaa ggacgaccgt aagggcaagc
     1801 gccgctaggc gcctgcactt acgtcaaaga cgagagaagg aaagcaatgg aagccaaggc
     1861 aattgcgcgc cacatccgcg taacgcctat gaaggcccgg cgcgtcgtca accttgttcg
     1921 tggattgcaa gcgaatgagg ctctggcaat tctgaagttt gccccccagg cagcttcgga
     1981 gccggtattc aaggtagttc agtcggcaat ctccaacgcc cgggtcctcg cggaccgcga
     2041 cggcgtggcg tttgacgaag gcgacctcat catcagcgaa gcgtttgttg atgaaggccc
     2101 gaccatgaag cggttccagc cgcgtgccca gggtcgcgca tttcagatca agaagcgcac
     2161 cagccacatc accgtggtag tcgctacccc ggagaaagag gaggctcgct aagtgggaca
     2221 gaaagtaaac ccgcacgggt tccgactcgg catcaccacc gatcacgtat cgcactggtt
     2281 cgctgacagc accaaggccg gccagcggta caaggacttc gttcgcgaag acatccgcat
     2341 ccgccagctc atgtccacgg gcatggagcg cgctggcatc gcgaaggtcg agatcgagcg
     2401 cacccgtgac cgcgtccgcg tggacatcca cacggcacgt ccgggcatcg tcatcggccg
     2461 ccgtggagca gaggcggacc gcatccgcgg cgagctcgaa aagctcaccg gcaagcaggt
     2521 ccagctgaac atcctcgagg tcaagaaccc cgagatggaa gcccagcttg ttgcccaggg
     2581 cgttgcagag cagctgactt cccgcgtggc cttccgccgc gccatgaaga aggccatcca
     2641 gtcggcgcag cgcgccggcg cgaagggcat ccgcatccag tgcgccggcc gcctcggcgg
     2701 cgccgagatg agccgctcgg agttctaccg cgaaggccgt gtgcccctgc acaccctccg
     2761 cgcgaacatc gactacggct tctacgaagc caagaccacc ttcggccgca tcggcgtgaa
     2821 ggtctggatc tacaagggtg acgtcaccgc caaggaactg gcccagcagg ccgcttccgc
     2881 cccgtcccgc gggcgctccg gcgaccgtcc gggccgcccg ggtggcgctg accgtggcga
     2941 tcgccgccgt cgcaacgacc gcccggccgc tgacgcagct cctgctgccg aggctccggc
     3001 agttgaagca gcacctgctg ctgcagaagg aggacaggct taaatgctta tc
//
LOCUS       DATIHC010000505         1503 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8468, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000505 DATIHC010000000
VERSION     DATIHC010000505.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1503
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8468"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(192..785)
                     /locus_tag="VLF16_08310"
     CDS             complement(192..785)
                     /locus_tag="VLF16_08310"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003243805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HSX70924.1"
                     /translation="MSDPKTLFQLLGRGYAPATLGKATLLVIDAQEEYRSGVLQLPDV
                     ASATEEIASLLLAARNIGAPVAHVRHLGIPGGLLDPQGPRGHFIDGLAPLNGEPIIEK
                     RLPNAFAGTDLHERLQQLGHLDLIICGFMTHSSVSTTVRAAKDYGYRCTVVDAACATR
                     DLPYDGELIPARALHRMALAALADNYAMVVPQARALI"
     gene            965..>1503
                     /gene="prmB"
                     /locus_tag="VLF16_08315"
     CDS             965..>1503
                     /gene="prmB"
                     /locus_tag="VLF16_08315"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008276 - protein methyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA];
                     GO_process: GO:0042273 - ribosomal large subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HSX70925.1"
                     /translation="MSPSRLRTVRDHIRWAVSRFHEAGLFFGHGTDNAWDDARQLVLG
                     ALHLPFEIAEGYLDCRLEEDEQQHLLALIRRRVEERIPTAYLLGEAWFCGLPFLVDER
                     VLVPRSPIAELIGQRFDPWLPTEPMRILDLCTGSGCIGIACAYAFPEAEVVLGDLSFD
                     ALEVANQNIERHELDERVYT"
BASE COUNT          222 a          491 c          530 g          260 t
ORIGIN      
        1 gcgagaaagc gccagcgcca gaacgccgag ccacgcggtc ggaggcggcg tgcatcgaat
       61 ccatcgtcgg acaacttcat tccgttctcc tttggggtat cggcgctatg accggccccg
      121 tcggcagggg ttccgggtca ctgccccgcg gcggcgaagc ctctcgcggc tagcggccgc
      181 gaacggcctt cctagatcag cgcgcgggcc tggggcacta ccatcgcata gttgtcggca
      241 agcgccgcca gggccatgcg gtgcagggcg cgggcgggaa tcagctcgcc gtcgtagggc
      301 aggtcgcggg tggcgcaggc ggcgtccacc acggtgcagc ggtagccgta atccttggcg
      361 gcgcgcacgg tggtgctgac gctggagtgg gtcatgaagc cgcagatgat caggtcgaga
      421 tggccgagct gctgcaggcg ctcgtgcagg tcggtgccgg cgaaggcgtt gggcagccgc
      481 ttttcgatga tcggctcgcc attcagcggc gccagcccgt cgatgaaatg cccgcgcggg
      541 ccctggggat cgagcaggcc gccgggaatg ccgagatggc gcacatgcgc gacgggcgca
      601 ccgatgttgc gtgcggccag cagcaggctg gcgatttcct cggtggcgga cgccacgtcc
      661 ggcaactgca gcacgccgct gcggtattcc tcctgggcat cgatgaccag cagagtggcc
      721 ttgccgaggg tggccggggc ataaccgcgt ccgagcagtt ggaacagggt tttggggtcg
      781 gacatgggtg ggctcctgta acggcgatgc gtctattctc tgctcgcccg gcgcatatgt
      841 gaacctcttc cgctgcttcg gtcgtgtgcg tgcggccggc cgcggcctgc agcaggcgac
      901 acgtcggggg agcacatgcg cgtcggcctg ctagaatcgc gcaccgattt tcgaggtatc
      961 caccgtgtcc ccatcccgcc tgcgcaccgt gcgcgaccac atccgctggg ccgtcagccg
     1021 ttttcacgag gccggcctgt tcttcggtca cggcacagac aacgcctggg acgacgcccg
     1081 ccaactggtg ctgggcgcgc tgcacctgcc gttcgagatc gccgaaggct acctggattg
     1141 ccgcctggaa gaagacgaac agcagcacct gctggcgctg attcgccgcc gcgtcgagga
     1201 gcgcataccg actgcttacc tgctgggcga ggcctggttc tgcggcttgc catttctggt
     1261 cgacgagcgc gtgctggtgc cgcgctcgcc catcgccgag ctcatcggcc agcgcttcga
     1321 tccttggctg ccgaccgagc ccatgcgcat cctcgacctg tgcactggct ccggctgcat
     1381 cggcatcgcc tgcgcctatg ccttccccga ggccgaggtg gtgctgggcg acctgtcgtt
     1441 cgatgcgctg gaggtggcca accagaacat cgagcggcac gagctggatg agcgggtcta
     1501 cac
//
LOCUS       DATIHC010000506         1661 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_6208, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000506 DATIHC010000000
VERSION     DATIHC010000506.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1661
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6208"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(152..1633)
                     /locus_tag="VLF16_08320"
     CDS             complement(152..1633)
                     /locus_tag="VLF16_08320"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017938059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSX70926.1"
                     /translation="MRFLVYSEVNSENIAQSLGLSEYSYYFVLKEFLPVLRELGEVSV
                     VKDPREVDPLYAKARREGAPCVFLSFTPPHKTPLGLKCPTVPVLAWEFDTIPSEHWSG
                     DPRQDWRYALRQCGRAITHSGMTLAAIRAEMGSDYSVVSAPAPVWDKYSPLRQRLAAE
                     GRRDRSVITVRSGVLLDTAAMSLAAHIPIAAAAVAKAREQEALNRKADVLPVSREQSL
                     LRITYRYGVEWYRLVGSDLLAGWLTRAKCRLLGRPLPEAEAPPVEPLPEQWRPREQRL
                     ELSGVVFTALFNPYDGRKNWEDMLTAFCEAFRDSPDATLVFKFGSSEYRSAMEEMLVY
                     MARLPRFSCRVVLLHGFLDGADFDALIEATHFVVNASYGEGQCLPLMEFLSCGRPAVA
                     PRNSAMLDYIDSEVAFVVEGWPDATAWAHDPRKSYRTCRQKINWESLVRAYRDAYRCC
                     KLEPERYAAMSEAAVGGMQRHCSRDTAARQLRELFSLGEVAKA"
BASE COUNT          339 a          559 c          497 g          266 t
ORIGIN      
        1 ccgaaggagc cgccgatgaa cgcctgcagg tggctcaagc tcggcaaggt ccaggggaac
       61 aggtctggca agtgctggaa aaccacgaac agcacggcta tcgcacgcag aacctcgata
      121 tcgccgatac gacggccagc agacatgtcg ctcatgcctt ggcgacctcg cccagactga
      181 agagctcacg caattgccgc gctgcagtat cccgcgagca atgccgctgc atccccccca
      241 ccgctgcctc cgacatggct gcgtagcgct caggctcgag tttgcagcag cggtaagcat
      301 cccgataggc ccgcaccagt gactcccagt tgatcttctg ccggcaggtc cgataggact
      361 tgcgcggatc atgggcccac gccgtagcat ccggccaacc ctcgactacg aaggcaacct
      421 cggaatcgat gtagtcgagc atcgccgagt tgcgaggggc gacagcaggc cggccgcagg
      481 acagaaattc catcaggggt aggcactgcc cctctccgta cgaggcattg accacgaagt
      541 gcgtagcctc gatcagggca tcgaaatccg cgccatcgag gaatccgtgc aacagcacca
      601 cgcggcagga gaacctcggc aggcgcgcca tgtagaccag catctcctcc attgcggagc
      661 ggtattcgct gctgccgaac ttgaacacca gggtcgcgtc gggactatcg cggaacgcct
      721 cgcagaaggc agtgagcatg tcttcccagt tcttgcggcc gtcgtagggg ttgaacaggg
      781 ccgtgaagac caccccggag agctccaggc gctgctcgcg cggccgccat tgctcgggca
      841 acggctccac cggtggagct tccgcctcag gcagcggtcg tcccagcaac ctgcacttcg
      901 ccctggtcag ccacccggcc aacaggtcgc tgccgaccag ccgataccac tccacgccgt
      961 agcgataggt gatgcgtagc agcgactgct cccgcgaaac cggaagaaca tccgcttttc
     1021 gattcagcgc ctcctgctca cgcgccttgg ctacggctgc cgctgcaatc ggaatatgcg
     1081 cagccaggga catggctgcg gtatccagca gcacaccgga tctgacggtg atcaccgagc
     1141 gatcgcggcg cccttcggca gcgagcctct ggcgcaaggg agagtacttg tcccagaccg
     1201 gcgccggcgc cgaaaccacc gaatagtcgc tacccatttc ggctcgtatg gccgccagcg
     1261 tcatccccga atgagtgatg gcccgaccgc attggcgcaa ggcatatcgc cagtcctgac
     1321 gaggatctcc cgaccagtgc tcgctcggga tggtgtcgaa ctcccaggcg agtaccggca
     1381 cggtcggaca cttgagcccc aggggcgtct tgtgcggcgg agtgaaggaa agaaacacgc
     1441 aaggggcgcc ctcgcggcgc gccttggcgt agagaggatc cacttcccgc gggtccttta
     1501 ccacgctgac ctcacccagc tcacgcagta ccggcaggaa ctccttgagc acgaagtagt
     1561 agctgtactc ggacagcccg aggctctggg caatgttttc agagttgacc tcggaataga
     1621 ccaggaacct catccccgcg cctcccgctc gacaccatgc g
//
LOCUS       DATIHC010000507         2274 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_12991, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000507 DATIHC010000000
VERSION     DATIHC010000507.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2274
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12991"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(138..992)
                     /locus_tag="VLF16_08325"
     CDS             complement(138..992)
                     /locus_tag="VLF16_08325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dialkylresorcinol condensing enzyme"
                     /protein_id="HSX70927.1"
                     /translation="MCEPLEKRPDVQVDYLPLQPAQPFPFPWPFLGFFRIFPETVLMR
                     PQPLLPLQVDAGKRYDLVILAYQVWFLSPSMPVTAFLASPEAARLLENTPVVTLIGCR
                     NMWLMAQEKVKARLAQLGARLVDNIALTDACGTAASFLATPLWMFTGRQKPYSWVPRA
                     GIEDGEIAAAGRFGEAMARRLARDELPITEPMLKGLGAVRVDEKLIGSEKVGNRSFQL
                     WSRLLSALGPQQSRRRGVGLVVYIVFLICLIITVVPLGALLKKLLAPLSRERTLREKA
                     YFAGPSGE"
     gene            1093..1524
                     /locus_tag="VLF16_08330"
     CDS             1093..1524
                     /locus_tag="VLF16_08330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013789558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2141 domain-containing protein"
                     /protein_id="HSX70928.1"
                     /translation="MPQRFLQTVTWPCLLALLFVSSPAAAGDILVKVQGGQAKGTLHL
                     ALVPADQPEWNGQILRQIHGDSSELRLTDVPPGNYAVQLFQDLDGDGALALSPRGVPR
                     EPVGFSTNPSLFKGKPTPPQCLFEHGGGDTSITVKLRGKQR"
     gene            complement(1521..2060)
                     /locus_tag="VLF16_08335"
     CDS             complement(1521..2060)
                     /locus_tag="VLF16_08335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015278604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HSX70929.1"
                     /translation="MRSLPLFLLLTVLAGCAGSANSEAPPQTAGKVDLERYQGTWYEL
                     ARLPMFFQRDCLASEAHYGLRDDGRVDVTNRCRTEDGEWKEAHGQAELQQPGQTDKLW
                     VRFDNWFSNLFPGLTKGDYWVLYLDDDYRTALVGNPNREYLWLLSRTPEVSAETRERL
                     LSEARSRGYDTAELVWRAD"
BASE COUNT          393 a          716 c          792 g          373 t
ORIGIN      
        1 ccgcgcccgc gacggctggc cgccgacgta gccgaggcgt tcttccatct gctcgttgtc
       61 gaccgggtcg aacggcaggt aggcgctgat gcggttgatg aagacgggat tggccacgtt
      121 gaattcctcg ggtcacttca ctcgccggac ggaccggcga agtaggcctt ttcacgcaga
      181 gtccgttccc tggacagcgg agccagcagt ttcttgagca gggcgccgag cggcaccacg
      241 gtgatgatca ggcagatcag gaagacgatg tagacgacca ggccgacacc tcggcgccgg
      301 ctctgctgcg ggccgagggc ggagagcagg cgactccaca gctggaagct gcggttgccg
      361 accttttcac tgccgatcag cttctcgtcg acgcgcacgg cgcccaggcc cttgagcatg
      421 ggctcggtga tgggcagctc gtcacgggcc agtcgccgcg ccatggcctc gccgaagcgg
      481 ccggcggcgg cgatctcgcc gtcttcgatg ccggcgcgcg gcacccagga gtagggcttc
      541 tgccggccgg tgaacatcca cagcggggtg gccaggaagc tggcggcggt gccgcaggca
      601 tcggtcaggg cgatattgtc gaccaggcgc gcgccgagct gagccaggcg cgccttgacc
      661 ttctcctggg ccatcagcca catgttgcga cagccgatca gggtcaccac cggggtgttc
      721 tcgagcagcc tggcggcctc cggcgaggcg aggaaggcgg tcaccggcat cgatggcgag
      781 aggaaccaca cctgataggc gaggatcaca aggtcatagc gcttgccggc gtccacctgc
      841 agcggcagca acggttgcgg acgcatcagc acggtttcgg gaaagatgcg gaagaagccg
      901 aggaacggcc aggggaaggg gaagggctgc gcgggctgca gcggcaggta gtcgacctgc
      961 acatcggggc gcttttccag gggctcgcac accgaccgga ccagacggtc caactggccg
     1021 gtttgtgaga aatgaaccac taaaacctga cgcatcgcat cccttgccga ttccctgcaa
     1081 aatggcggga ttatgccaca gcgatttctt caaaccgtaa cctggccatg cctgctggca
     1141 ctgctgttcg tcagttcgcc agcggcagcc ggggacattc tggtcaaggt gcagggcgga
     1201 caggccaagg gcaccctgca cctggctctg gtgccggccg accagccgga gtggaacggc
     1261 cagatcctgc gccagataca tggcgattcc agtgaactgc gtctgaccga tgtgccgccg
     1321 gggaactatg ccgtgcagct gttccaggac ctggacggcg acggcgccct ggccctcagc
     1381 ccccgcggcg tgcctcgcga gccggtgggc ttttccacca atcccagcct gttcaagggc
     1441 aagccgacgc cgccgcagtg cctgttcgag cacggcggcg gcgatacgtc gatcacggtg
     1501 aagctgcgcg gcaagcagcg ctagtcggcg cgccagacca gctcggcggt gtcgtagccg
     1561 cgactgcgtg cctcggacag caggcgctcg cgagtctcgg ccgagacttc gggcgtgcgc
     1621 gacagcagcc agaggtattc gcggttgggg ttgccgacca gcgcggtgcg atagtcatcg
     1681 tccagataga gcacccagta gtcgcccttg gtcaggccgg ggaagaggtt gctgaaccag
     1741 ttgtcgaagc gcacccatag cttgtcggtc tgtcccggct gctggagttc ggcctggccg
     1801 tgggcctcct tccactcgcc gtcttcggtg cggcaacggt tggtcacgtc gacgcggccg
     1861 tcgtcacgca gcccatagtg cgcctccgag gcgaggcagt cgcgctggaa gaacatcggc
     1921 agtcgcgcga gttcgtacca ggtgccctga tagcgctcga gatcgacctt gccggcggtc
     1981 tgcggcgggg cctcggaatt cgccgatccg gcgcagccgg cgaggacggt gagcagcaag
     2041 aagagtggca gcgaacgcat gagacgatct ccagggtctg ttcgcactat gacaacgccg
     2101 gccggcgacg ggtccgttta cttgaggccc tggccggaga acatcatcac cttgtcgccg
     2161 gcgaactgaa cgctgatgaa ggaggtttcg tcgccccagg tgcagctggt caggccgatg
     2221 gcgccggagc actcggtggg gctgccgagc aggttttcca cttcgccctt gggc
//
LOCUS       DATIHC010000508         2594 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21657, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000508 DATIHC010000000
VERSION     DATIHC010000508.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2594
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21657"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..792)
                     /locus_tag="VLF16_08340"
     CDS             complement(<1..792)
                     /locus_tag="VLF16_08340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003282666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70930.1"
                     /translation="MTTARVLGLAICLASTSAFALEQGEALINGFGTVGVTHLGGEED
                     GRGYGLSGQTTDSWRGDQLSKFGAQLTYGVTDTVGLTLQTTAKAYADEWKANLEWAYL
                     SWQSTDNLMMRFGRLRTPVYMYSESIDVGFAYPWLRLPDEVYSQVQLSNYEGADLVYN
                     LPLSFATLSFQVAGGVAKNRDYYLYDEEFDIDYDNVFGSSVSLATNDFGTFRVGYVEA
                     DIETEIAGSFTDLLGNPGTATLLALDKEKGKFTSIGYQYDNGTWLT"
     gene            complement(815..2437)
                     /locus_tag="VLF16_08345"
     CDS             complement(815..2437)
                     /locus_tag="VLF16_08345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098561 - methyl accepting chemotaxis
                     protein complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSX70931.1"
                     /translation="MLKNLSLTLKLSLLPAVALLGLLLFVVYTSTQLAANDARLDTLE
                     THSFPTLEKADAVNFQFSRLPGLLNSAVAAGELATLDEARKVLGDIAGLQQQLQPLTR
                     ANAERAGELEDWRQAIGRYADNALSASEQLIKGSAGFEDLRPSLDRMASDLAAAQQLG
                     AAFRAHAYEDFQSTLGQARTDNAETTRAGYILSALLVALVGLGAWVIIRGIMGNVHGV
                     IESLQAIARGDGDLTRRVNVDSRDEIGEMIQLFNGFLDKLQGTIRQIIEAASPLGSMS
                     QELYRLTQGSEENAKSQQGHTDSISRDIQTMTSSIQEVAQRSQQASQGAGDASRQADV
                     ARASIGGLSTSISDLGSSVLGAVQAMQQLEEETQQVGSVLTVIRSIAEQTNLLALNAA
                     IEAARAGEQGRGFAVVADEVRNLAQKTAASTAEIQQIIQRLQNSANGVLNVMTANGDK
                     AQHSIERSVEATRMLESIVSAVGQIDELNAGIAQLTHEQIGLSSSIQQDTQVLQQDAQ
                     ATAHGAEATARLGEQLVSTGDHLRAATAQFRV"
BASE COUNT          372 a          775 c          957 g          490 t
ORIGIN      
        1 ggtcagccag gtgccgttgt cgtactggta gccgatggag gtgaacttgc ccttttcctt
       61 gtccagggcc agcagggtgg cggtgcccgg gttgcccagc aggtcggtga agctgccggc
      121 gatctcggtc tcgatgtcgg cctcgacata gccgacgcgg aaggtgccga agtcgttggt
      181 ggccaggctc acgctggaac cgaagacgtt gtcgtagtcg atgtcgaact cttcgtcgta
      241 caggtagtag tcgcggttct tggcgacgcc gccggcgacc tggaacgaca gggtggcgaa
      301 ggacagcggc aggttgtaga ccaggtcggc gccttcgtaa ttggacagct ggacctggct
      361 gtagacctcg tccggcaggc gcagccaggg gtaggcgaag cccacgtcga tgctctcgga
      421 gtacatgtag accggggtgc gcagacggcc gaagcgcatc atcaggttgt cggtgctctg
      481 ccaggacagg taggcccact ccaggttggc cttccactcg tcggcatagg ccttggcggt
      541 ggtctgcagg gtcaggccga cggtgtcggt gacgccgtag gtcagctggg cgccgaactt
      601 gctcagctgg tcgccacgcc aggagtcggt ggtctggccg gagaggccgt agccgcggcc
      661 gtcctcttcg ccgcccaggt gggtgacgcc gacggtgccg aaaccgttga tgagggcctc
      721 gccttgttcc agcgcgaatg ccgaggtgct ggccaggcag atcgccaggc cgagaacgcg
      781 ggcagtagtc atgcagtgat gctccagtga aagattaaac gcggaattgg gccgtcgccg
      841 cgcgcaggtg gtcccctgtg ctgaccagct gctcgccgag gcgtgcggtg gcttcggccc
      901 catgtgcggt tgcttgggcg tcctgctgca acacttgggt gtcttgttgg atggaactgg
      961 acaggccgat ctgctcgtgg gtgagctggg cgatgccggc gttcagttcg tcgatctggc
     1021 ccaccgcgga aacgatggac tcgagcatgc gggtggcttc caccgagcgc tcgatgctgt
     1081 gctgggcctt gtcgccgttg gcggtcatga cgttgagcac gccgttggcg ctgttctgca
     1141 ggcgctggat gatctgctgg atctcggcgg tggaagcggc ggtcttctgc gccaggttgc
     1201 gcacctcgtc ggcgaccacg gcgaagccgc gaccctgctc gccggcgcgg gcggcctcga
     1261 tggcggcgtt gagtgccagc aggttggtct gctcggcgat gctgcggatc acggtgagca
     1321 ccgagcccac ctgctgggtt tcttcctcta gctgctgcat ggcctgcacc gcgccgagca
     1381 cgctgctgcc caggtcgctg atgctggtcg acaggccgcc gatgctggcg cgcgcgacat
     1441 cggcctggcg cgaggcatcg ccggcgccct gggaggcctg ctgcgagcgc tgcgccacct
     1501 cctggatgct gctggtcatg gtctggatgt cgcggctgat cgagtcggta tggccctgct
     1561 gcgacttggc gttctcttcc gagccctggg tcagccggta cagctcctgg gacatgctgc
     1621 ccagcgggct ggcggcctcg atgatctggc ggatggtgcc ctgcagcttg tcgaggaagc
     1681 cgttgaacag ctggatcatc tcgccgatct cgtcgcgcga gtcgacgttg acccggcggg
     1741 tcaggtcgcc gtcgccgcgg gcgatggcct gcagcgattc gatcacgccg tgcacgttgc
     1801 ccatgatgcc gcggatgatc acccaggcgc cgaggccgac cagggccacc agcagggcgc
     1861 tgaggatgta gccggcgcgg gtggtctcgg cgttgtcggt gcgggcctgg ccgagggtgc
     1921 tctggaagtc ctcgtaggcg tgggcgcgga aggcggcgcc gagttgctgc gcggcggcca
     1981 ggtcgctggc catgcggtcc aggctcgggc gcaggtcttc gaagccggcg ctgcccttga
     2041 tcagttgctc ggaggcggac agggcattgt cggcgtagcg gccgatagcc tggcgccagt
     2101 cctccagttc gccggcacgc tcggcgttgg cgcgggtcag cggctgcagc tgctgctgca
     2161 ggccggcgat atcgccaagc accttgcgcg cctcgtcgag ggtcgccagc tcgcccgcgg
     2221 ccacggcgct gttgagcagg ccgggcaggc gggagaactg gaagttgacc gcgtcggcct
     2281 tctccagcgt cgggaagctg tgggtctcga gggtgtccag gcgggcatcg ttggccgcca
     2341 gctgcgtcga ggtgtagacc acgaacaaca gcaggccaag cagggcgaca gcgggcagca
     2401 gcgacaactt cagggtcagc gacagattct tgagcattag gcaggtaccc agagaggggc
     2461 gcgaattgta cagaaagcct tttggtggct aaaggccatc cgtcagtcat cctgtgactg
     2521 aggagggcgt ctgtgttttg gtacccgcta tgtcggccgc acctcttctt tctatagccg
     2581 ctgatggcgg gcgg
//
LOCUS       DATIHC010000509         6749 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29385, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000509 DATIHC010000000
VERSION     DATIHC010000509.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6749
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29385"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2565)
                     /locus_tag="VLF16_08350"
     CDS             complement(<1..2565)
                     /locus_tag="VLF16_08350"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:NF019315.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HSX70932.1"
                     /translation="MSSALCRLLSLLFLMLFCGAARAELPLFDLRQADLDTVPPVRLL
                     EDPAEQLSLHQARARLLDEGQDLRAIPSLGWSDSAWWLGMRLQGRAGQRYYLWLDHTY
                     LDDVQFWVFVDDQLQLYRQVGDLLPFARRDEPLRGFLMPLPGLGTAQQEVILRVRSTS
                     SISLPIRLLPAERKDRLLATTWLNNGLIVGALLVMALFHLLKFAIAPDRRLGYYCATI
                     LSVAWYTAAINDLTNLLAWRNWPAATPFETNLFGVLTLIFSTLFISASLRLNHGLPRR
                     LRDLLILALGGVLVWVLASPTHSQAAQAMNLLLLAIGLFQLGLTLLALYLRRPYAGWF
                     ALFWSGAILLMLMLSLSRSGLVPRNAWVDVLHAWLPVICVFLFGVLNGRQLDDVRQAL
                     LASREQAIANLEQYRGLFRNAAEGIFRCNRQGLLLETNPSFLRLLGRPESDAELLQAQ
                     PIQGLLAPGDWLRLCEQLSEAQSIASGEVQLQTVDGHSRWVHLSLHEQRSQHCIEGIV
                     VDLSERRALEQRLARLAAHDSLTGLVNRRELERLLQGSLEGSGRHFSHLLFLDLDQFK
                     QVNDLCGHSAGDQLLRQLAGHLLGCLPGQAELARIGGDEFAVLLGGCDRAEALEHAER
                     LRQAVEDFLFSYGGRPFRLCVSIGVLELASGVRDWEEALNWADNASSMAKAQGRNRVH
                     LFNPADGALVEHQRQLQWIARLREAIERQHFELFYQPVRSLRGEEAGAHYEVLLRYRD
                     PQSGEWVEPGQFLVAAERYGFLAQIDRWVLRRYCQWLAGNPRHLQALAQVNINLSAPS
                     LHDPDFHDLLDELLDTHSLPAGKLCLEITEMVALAELGSSAGWIERLRQRGLKVALD"
     gene            complement(2626..3318)
                     /locus_tag="VLF16_08355"
     CDS             complement(2626..3318)
                     /locus_tag="VLF16_08355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003084223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HSX70933.1"
                     /translation="MTETPAIYRSLLESGQWFSHLPQALCDALLSEARLLQLEPGQRL
                     FRRGDPPCGLYAVLEGMMRVGAVSRDGKEALLTLVEPPYWFGEISLFDGQPRTHDAYA
                     EGPARLLQVPQAALLALLAREPAYWRDFALLMSQKLRLAFIALEEMSLLPAAPRLARR
                     LLMMAEGYGETDPRSVLHLAQEPLALMLGLSRQTTNQILKDLEARGALRLTYGGIEIA
                     DLGILRQAAGVG"
     gene            3401..3928
                     /locus_tag="VLF16_08360"
     CDS             3401..3928
                     /locus_tag="VLF16_08360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003242470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mpo1-like protein"
                     /protein_id="HSX70934.1"
                     /translation="MKTLVDHLGQYAEYHRDRRNILSHFIGIPMIVVAVAVLLSRPGW
                     DVAGLWVSPALLTALAAGVFYLRLDLRFGVLMAALLALSLWAGATLAQQSTLVWLSGG
                     LGLFVVGWIIQFVGHYYEGRKPAFVDDLMGLVVGPLFVVAELGFLLGLRPEVQEAVER
                     RAGPTCIRPPKALAS"
     gene            4354..5475
                     /locus_tag="VLF16_08365"
     CDS             4354..5475
                     /locus_tag="VLF16_08365"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008746 - NAD(P)+ transhydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HSX70935.1"
                     /translation="MHIGVPLETHAGETRVAATPETVKKLVGQGHQVTVQSGAGVSAS
                     IPDSAFEAAGATIGSDAAAFGADLVLKVVAPTEAELAHMKSGAVLVGMLNPFCNDTIA
                     RMNARGITAFALEAAPRTSRAQSLDVLSSQANIAGYKAVLLAAHHYPRFMPMLMTAAG
                     TVKAARVLILGAGVAGLQAIATAKRLGAVIEASDVRPAVKEQIESLGAKFVDVPFETD
                     EERECAQGVGGYARPMPASWMERQAKAVHERAKQADIVITTALIPGRKAPTLLHEATV
                     AEMKPGSVVIDLAAAQGGNCPLTEADQVVVKHGVTLVGHTNLAALVPADASALYARNL
                     LDFLKLVIDKEAQFQLNLEDDIVAACLMCKGGEVVRKNG"
     gene            5487..5801
                     /locus_tag="VLF16_08370"
     CDS             5487..5801
                     /locus_tag="VLF16_08370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003241061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P) transhydrogenase subunit alpha"
                     /protein_id="HSX70936.1"
                     /translation="MELISPSIYNLIIFVLAIYVGYHVVWNVTPALHTPLMAVTNAIS
                     AIVIVGAMLAAALTETTLGKTMGTLAVALAAVNVFGGFLVTRRMLEMFKKKAPKASAE
                     KH"
     gene            5801..>6749
                     /locus_tag="VLF16_08375"
     CDS             5801..>6749
                     /locus_tag="VLF16_08375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)(+) transhydrogenase (Re/Si-specific)
                     subunit beta"
                     /protein_id="HSX70937.1"
                     /translation="MSMNLITLLYLVASVCFIQALKGLSHPTTSRQGNAFGMIGMAIA
                     VITTVFLVFKLGAEMAEGGAAKGLGFVLVGLLVGGTAGSIMAKRVEMTKMPELVAFMH
                     SMIGLAAVFIAIAAVVEPQSLGIVHALGDAIPAGNRLELFLGAAIGAITFSGSVIAFG
                     KLSGKYKFRLFQGAPVVFKGQHLVNLVFGLAILGLGLYFTFTGDIRAFAVLVALSFII
                     GVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIM
                     CKAMNRSFFNVILGGFGADADAGGPAGAQQERNVKSGSSD"
BASE COUNT         1090 a         2326 c         2247 g         1086 t
ORIGIN      
        1 gtccagcgcc accttgagcc cgcgttgacg caggcgctcg atccatccgg ccgagctgcc
       61 cagctcggcc agcgccacca tctcggtgat ttccaggcac agcttgccgg ccggcaggct
      121 gtgggtgtcg agcagctcgt cgagcaggtc gtggaaatcc gggtcatgca gtgaaggcgc
      181 gctgaggttg atgttgacct gcgccagcgc ctgcaggtgg cgcgggttgc cggccagcca
      241 ctggcagtag cggcgcagca cccagcggtc gatctgcgcg agaaagccgt agcgttcggc
      301 ggcgaccagg aactgtccgg gctccaccca ctcgcccgat tgcgggtcgc ggtagcgcaa
      361 cagcacctcg tagtgggcac cggcttcttc gccgcgcagc gaccgcaccg gttggtagaa
      421 caactcgaag tgctgccgct cgatggcctc gcgcaggcgg gcgatccact gcagctggcg
      481 ctggtgctcg accagcgcgc cgtcggccgg gttgaacagg tgcacgcggt tgcggccctg
      541 ggccttggcc atgctgctgg cgttgtccgc ccagttcagt gcctcttccc aatcccgcac
      601 gccggaagcc agctcgagca cgccgatgct cacgcacagg cggaacggcc gaccgccata
      661 gctgaacagg aaatcctcca ccgcctggcg caagcgctcg gcgtgctcca gcgcttcggc
      721 tcggtcgcaa ccgccgagca gcacggcgaa ctcgtcgccg ccgatgcgcg ccagctcggc
      781 ctgccccggc aggcagccga gcaggtggcc ggccagctgg cgcagcagct gatcgccggc
      841 ggaatggccg cagaggtcgt tgacctgctt gaactggtcc aggtcgagga acagcaggtg
      901 gctgaagtgc cgcccactgc cctccaggct gccctgcagc aggcgctcca gctcgcggcg
      961 gttgaccagc ccggtgagcg agtcgtgagc ggccaggcgc gccagtcgct gctccagggc
     1021 gcgtcgctcg ctgaggtcga cgacgatgcc ctcgatgcag tgctggctgc gctgctcgtg
     1081 cagcgacagg tgcacccagc ggctgtggcc atcgacggtc tgtagctgca cctcgccgct
     1141 ggcgatgctc tgcgcctcgc tcagctgctc gcacagacgc agccagtcgc cgggcgccag
     1201 caggccctgg atcggctggg cctggagcag ctcggcgtcg ctctcggggc gaccgagcag
     1261 gcgcaggaag ctggggttgg tctccagcag caggccctgg cggttgcagc ggaagatgcc
     1321 ttcggcggcg ttgcggaaca gcccgcggta ctgctccagg ttggcgatgg cctgctcgcg
     1381 ggaggccagc agcgcctggc gcacgtcgtc cagctggcga ccgttgagca cgccgaagag
     1441 gaacacgcag atcaccggca gccaggcgtg cagcacgtcg acccaggcgt tgcgcggcac
     1501 cagccccgag cggctcagcg agagcatcag catgagcagg atggcgccgc tccagaacag
     1561 cgcgaaccag ccggcgtaag gccgccgcag atagagcgcg agcagggtca ggccgagctg
     1621 gaacaggccg atcgccagca acagcaggtt catcgcctgc gccgcctggc tgtgcgtcgg
     1681 gctcgccagc acccacacca gcacgccgcc cagcgcgagg atcaacaggt cgcgcaggcg
     1741 ccgtggcagg ccgtggttca gacgcagcga ggcgctgatg aacagggtgc tgaagatcag
     1801 cgtgagcacg ccgaacaggt tggtctcgaa cggcgtggcc gccggccagt tgcgccaggc
     1861 cagcaggttg gtcaggtcgt tgatcgccgc ggtgtaccag gcgacgctga gtatggtcgc
     1921 gcagtagtag cccaggcggc ggtccggcgc gatggcgaac ttgagcaggt ggaacagcgc
     1981 catgaccagc agcgcgccga cgatcaggcc gttgttcagc caggtggtgg cgagcaggcg
     2041 gtccttgcgc tcggccggca acagcctgat cggcaggctg atcgacgagg tgctgcgtac
     2101 ccgcaggatc acttcctgct gcgccgtgcc gaggcccggc agcggcatca ggaagccgcg
     2161 caagggctcg tcgcggcggg cgaagggcag caggtcaccg acctggcggt agagctgaag
     2221 ctgatcgtcg acgaacaccc agaactgcac gtcgtcgagg taggtgtggt ccagccacag
     2281 gtaatagcgc tggccggcgc gcccctgcag gcgcatgccg agccaccagg cgctgtcgct
     2341 ccagccgagc gagggaatgg cccgcagatc ctggccttcg tcgagcaggc gcgcccgcgc
     2401 ctggtgcagt gacaactgct cggcggggtc ctcgagcagg cgcaccggtg gcaccgtgtc
     2461 caggtcggcc tggcgcaggt cgaacagcgg cagctcggcc cgggcggcgc cgcagaacag
     2521 catcaggaac agcagggaca ggagccggca aagggcagac gacatcgttg gagtccggga
     2581 ggcggaagtg ctggcgaaaa gccttatgcc agcttagcgc acgcctcagc cgacgcctgc
     2641 ggcctggcgc aagatcccga gatcggcgat ctcgatgccg ccgtaggtca ggcgcagggc
     2701 gccgcgcgcc tccaggtcct tgaggatctg attggtggtc tgccgcgaca ggccgagcat
     2761 cagcgccagt ggctcctgag ccagatgcag cacgctgcgc ggatcggtct cgccgtagcc
     2821 ctcggccatc atcagcaggc gccgggccag gcgcggtgcc gccggcagca ggctcatctc
     2881 ttccagggcg atgaaggcca ggcgcagctt ctggctcatc agcagggcga agtcgcgcca
     2941 gtacgccggc tcgcgcgcca gcagcgccaa gagcgccgcc tgcggcacct gcagcaggcg
     3001 ggccgggccc tcggcatagg cgtcgtgggt gcgcggctgg ccatcgaaca gcgagatctc
     3061 gccgaaccag tagggcggct cgaccagggt cagcagcgcc tccttgccgt cgcggctgac
     3121 cgcaccgacg cgcatcatcc cctcgagcac ggcgtacaac ccgcagggag ggtcgccgcg
     3181 gcggaacagt cgctgccccg gctccagctg cagcagacgc gcctcgctca acagcgcgtc
     3241 gcacagggcc tgcggcaggt ggctgaacca ctggccgctt tccagcagcg agcgatagat
     3301 ggcaggcgtc tcggtcatgg ctttgtcggc tagctgacag tcgggcaacg ggggctggcg
     3361 agatcatgcc accaaccccg ccttgctgag gaccctaata atgaaaaccc tcgtcgatca
     3421 tctcggccag tacgcggagt accaccgcga ccgccgcaac atcctcagcc acttcatcgg
     3481 catcccgatg atcgtggtcg ccgtcgccgt gctgctgtca cgcccgggct gggacgtcgc
     3541 cggcctgtgg gtctcgcccg cgctgctcac tgcgctggcc gccggcgtct tctacctgcg
     3601 cctggacctg cgcttcggcg tgctgatggc cgcgctgctg gcgctcagcc tgtgggccgg
     3661 cgccacgctg gcgcagcaga gcacgctggt gtggctgagc ggcggcctcg gcctgttcgt
     3721 ggtcggctgg atcatccagt tcgtcggtca ttattacgaa ggccgcaagc ccgcctttgt
     3781 cgacgacctg atgggcctgg tggtcggccc gctgttcgtg gttgccgagc tgggcttcct
     3841 gctcggcctg cggccggagg tacaggaagc ggtggagcgc cgcgccggcc ccacctgcat
     3901 ccgcccgccc aaggccctgg cctcctgagc tgttattgcg gccgccgctc gggcggccgc
     3961 ctcgccgggt tcgagtagtc cacggctggc gcttactaca aagcgtcgcg tcctcgaatc
     4021 tttctgccgc actccctcct tacttctacc acctcatcgt caatcgacga acggccattc
     4081 acgcgccgaa tgccgctctg cgccgcgatc ttccgcaaat ccggcttcat cccagcaata
     4141 acggcacttt gcggaccaat gcaggaacta caagtcacgg catgacttgt agttatcaaa
     4201 cagtaccgct tcagaatttc ttgaaggcct cgacaatcgc ctgcaaaatg ccgcgcccgc
     4261 ccccttccgg tgcggctttg tgctgatccc actcacccgc gtgccacacg tagtgcgctg
     4321 gttcatcaaa acgatcacgc aggagatttc tcagtgcaca tcggtgttcc tctcgagacc
     4381 catgccgggg agacgcgggt tgccgcgacg cccgaaaccg tcaagaaact ggttggccag
     4441 ggccatcagg tgaccgttca gagcggtgcc ggcgtcagcg ccagcatccc ggacagcgcc
     4501 tttgaagccg ccggcgcgac cattggcagc gacgccgccg ccttcggcgc cgacctggtg
     4561 ctgaaagtgg tcgccccgac cgaagccgaa ctggcccata tgaagtccgg cgcggtgctg
     4621 gtcggcatgc tcaacccgtt ctgcaacgac accattgcgc gcatgaatgc ccgcggcatc
     4681 accgccttcg ccctggaggc cgccccgcgt acctcccgcg cgcagagcct ggatgtgctg
     4741 agctcgcagg ccaacatcgc cggctacaag gccgtgctgc tggccgctca ccactatccg
     4801 cgcttcatgc cgatgctgat gaccgccgcc ggcaccgtga aggccgcccg cgtgctgatc
     4861 ctcggcgccg gcgtggctgg cctgcaggcc atcgccaccg ccaagcgtct gggtgcggtg
     4921 atcgaggcct ccgacgtacg cccggccgtg aaggagcaga tcgaatcgct cggcgccaag
     4981 ttcgtcgacg tgccgttcga gaccgacgaa gagcgcgagt gcgcccaggg tgttggcggc
     5041 tacgcccgcc cgatgccggc ttcgtggatg gagcgccagg ccaaggccgt gcacgaacgc
     5101 gccaagcagg ccgacatcgt catcaccacc gcgctgattc cgggccgcaa ggcgccgact
     5161 ctgctgcatg aggcgaccgt cgccgagatg aagccgggct ccgtggtcat cgacctggcc
     5221 gccgctcagg gtggcaactg cccgctgacc gaggccgacc aggtggtggt caagcacggt
     5281 gtgaccctcg tcggccacac caacctggcc gcgctggtgc cggcggatgc ctccgccctg
     5341 tacgcccgca acctgctgga cttcctcaag ctcgtgatcg acaaggaagc ccagttccag
     5401 ctcaacctcg aagacgacat cgtcgctgcc tgcctcatgt gcaagggcgg tgaagtcgtg
     5461 cgcaagaacg gttaaggagt cgcgagatgg aactgatctc ccccagcatc tacaacctga
     5521 tcatcttcgt actggccatc tacgtgggct accacgtggt gtggaacgtc accccggctc
     5581 tgcacacccc gctgatggcc gtgaccaacg ccatttccgc catcgtcatc gtcggcgcca
     5641 tgctggccgc cgcgctgacc gaaaccaccc tcggcaagac catgggcacc ctggccgtgg
     5701 ccctggccgc ggtgaacgtg ttcggtggct tcctggtcac ccgccgcatg ctggaaatgt
     5761 tcaagaagaa ggcgcccaag gcctcggcgg agaagcactg atgagcatga acctgatcac
     5821 cctgctgtac ctggtcgcgt ccgtctgctt catccaggcg ctgaaaggcc tgtcgcaccc
     5881 gaccacctcc cgccagggca acgccttcgg catgatcggc atggccatcg ccgtgatcac
     5941 caccgtgttc ctggtgttca agctgggcgc ggaaatggcc gagggcggcg ccgccaaggg
     6001 cctgggcttc gtgctggtcg gcctgctggt cggcggcacc gccggctcga tcatggccaa
     6061 gcgcgtcgag atgaccaaga tgccggaact ggtcgccttc atgcacagca tgatcggcct
     6121 ggctgccgtg ttcattgcca tcgccgccgt agtcgagccg cagtccctgg gcatcgtgca
     6181 cgccctgggc gacgccatcc cggccggtaa ccgcctggag ctgttcctcg gcgcggccat
     6241 cggtgccatc accttctccg gttcggtgat tgccttcggc aagctgtccg gcaagtacaa
     6301 gttccgcctg ttccagggcg ccccggtggt gttcaagggc cagcacctgg tcaacctggt
     6361 gttcggcctg gccatcctcg gcctgggcct gtacttcacc ttcaccggtg acatccgcgc
     6421 cttcgccgtg ctggtggctc tgtcgttcat catcggcgtg ctgatcatca tcccgatcgg
     6481 cggcgccgac atgccggtcg tggtgtcgat gctcaacagc tactcgggct gggcggcggc
     6541 cggtatcggc ttctcgctga acaactcgat gctgatcatc gcaggctcgc tggtaggttc
     6601 gtccggtgcc atcctctcgt acatcatgtg caaggcgatg aaccgctcgt tcttcaacgt
     6661 gatcctcggc ggcttcggcg ccgatgccga cgccggcggc ccggctggcg cgcagcagga
     6721 gcgcaacgtg aagtcgggct cctccgacg
//
LOCUS       DATIHC010000510         2604 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17083, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000510 DATIHC010000000
VERSION     DATIHC010000510.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2604
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17083"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            33..926
                     /locus_tag="VLF16_08380"
     CDS             33..926
                     /locus_tag="VLF16_08380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009621578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
                     /protein_id="HSX70938.1"
                     /translation="MPDYEALREPLLNTMVEHGVKGTLLLAEEGINGTVSGTRAGIDG
                     LLAWLRRDARLADVDHKESYCDEQPFYRTKVKLKKEIVTLGVPGVDPNQRVGTYVEPQ
                     DWNALISDPEVLLIDTRNDYEVAIGTFEGAVDPKTKSFRDFPQYVKAHYDPAKHKKVA
                     MFCTGGIRCEKASSYMLGEGFEEVFHLKGGILKYLEEVPQEQSKWQGDCFVFDNRVTV
                     RHDLSEGDYDQCHACRNPISAADRESEHYSPGISCPHCWDSLPEKTRQAARERQKQIE
                     IAQARNLPHPIGFNYKALQEG"
     gene            1030..1638
                     /locus_tag="VLF16_08385"
     CDS             1030..1638
                     /locus_tag="VLF16_08385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018929864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HSX70939.1"
                     /translation="MDPMCSWCWGFAPVVEALAEQAAAAGVPLHLVTGGLRRERAAME
                     PAARVRILAHWQAVNASTGQLFNFHDALPEGFVYDTEPACRALVIARQLDEQSVWPLA
                     RLIQEAFYAEGRDVTRAQVLVELAERAGIPRIEFAAAFDSPAMQAATEADFTWVQDLG
                     IAGFPTLLAEREGQLALLTNGYQPLEVLQPLLGRWLEHAAHA"
     gene            1631..>2604
                     /locus_tag="VLF16_08390"
     CDS             1631..>2604
                     /locus_tag="VLF16_08390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSX70940.1"
                     /translation="MPDRLTWVEIRRLALRHRKGLILANLIAVVATLCSVPIPLLLPL
                     LVDEILLEQGDAALKVMDRFLPPAWETAAGYIGLMLALTLTLRLGALVSNVLQARLFA
                     RLSKDVIYRLRVRLIERLKRIALGEYENLGGGTVSAHLVTDLDTLDKFVGETLSKVLV
                     ALLTLTGTAAILIWMHWQLALLILLFNPLVIYATVQLGKQVKHLKKLENDSTSRFTEA
                     LTETLEAIQEVRAGNRQGYFLGRLGLRAREVRDYAVASQWKSDAAGRTSGLLFQFGID
                     AFRAAAMLTVLFSDLTIGQMLAVFSYLWFMIGPVEQLLSLQYAYYAAGG"
BASE COUNT          433 a          931 c          839 g          401 t
ORIGIN      
        1 gtcacccggt tgtcgaagac gaagcagtct ccctgccgga ctacgaggca ctgcgcgagc
       61 ccctgctgaa caccatggtc gaacacggcg tgaagggcac cctgctgctc gccgaggaag
      121 gcatcaacgg caccgtgtcc ggcacgcgcg ccggcatcga cggcctgctg gcctggctca
      181 ggcgcgatgc acgcctcgcc gacgtggacc acaaggagtc ctactgcgac gagcagccct
      241 tctaccgcac caaggtcaag ctgaagaagg aaatcgtcac cctcggcgtg ccgggcgtgg
      301 accccaacca gcgggtcggc acctacgtcg agccgcagga ctggaacgcc ctgatcagcg
      361 accccgaggt gctgctgatc gacacccgca acgactacga ggtggccatc ggcaccttcg
      421 agggcgccgt cgatccgaag accaagtcct tccgcgattt cccgcagtac gtcaaggcgc
      481 actacgaccc ggccaaacac aagaaggtcg ccatgttctg caccggcggc atccgttgcg
      541 agaaggcctc cagctacatg ctcggcgaag gcttcgagga ggtcttccac ctcaagggcg
      601 gcatcctcaa gtacctcgaa gaggtcccgc aggagcagag caagtggcag ggagactgct
      661 tcgtcttcga caaccgggtg acggtgcgcc acgacctgtc cgagggcgac tacgaccagt
      721 gccacgcctg ccgcaacccg atctcggccg ccgaccgcga gagcgagcac tattcgcccg
      781 gcatcagctg cccgcattgc tgggactcgc tgccggagaa gacccgccag gccgcccgcg
      841 agcgccagaa gcagatcgag atcgcccagg cgcgcaacct gccgcacccc atcggtttca
      901 actacaaggc gctgcaggaa ggctgaacca ccaccccgaa cggctgctct gtgcctacac
      961 tgcagcctcc actcgacgtc ggccgccgac taaggaccgc cagtgcgccc agcccgcctg
     1021 atctacgtga tggaccccat gtgctcctgg tgctggggct tcgccccggt ggtcgaggcc
     1081 ctggccgagc aggccgccgc ggcgggtgtg ccgctgcatc tggtcaccgg cggcctgcgc
     1141 cgcgagcggg cggccatgga gccggccgcg cgggtgcgca tcctcgccca ctggcaggcg
     1201 gtcaatgcca gcaccggcca gctgttcaac ttccacgatg cgctgccaga aggcttcgtc
     1261 tacgacaccg agccggcctg ccgcgccctg gtcatcgcgc gccagctgga cgagcagagc
     1321 gtctggccgt tggccaggct gatccaggaa gccttctacg ccgaaggccg cgacgtgacc
     1381 cgcgcccagg tgctggtgga actggccgag cgcgccggca ttccgcgcat cgagttcgcc
     1441 gcggccttcg acagccctgc catgcaggcg gccaccgaag ccgacttcac ctgggtgcag
     1501 gacctcggca tcgccggctt cccgaccctg ctggccgagc gcgaggggca gctggccctg
     1561 ctgaccaatg gctaccagcc gctggaggta ttgcaaccgc tgctgggccg ctggctggag
     1621 cacgcggccc atgcctgatc ggctgacctg ggtggagatc cgccgcctcg cgctgcgcca
     1681 ccgcaagggc ctgatcctgg ccaacctgat cgccgtagtc gccaccctgt gcagcgtgcc
     1741 gatcccgctg ctgttgccgc tgctggtcga cgagatcctg ctggagcagg gcgacgcggc
     1801 gctcaaggtg atggaccgct tcctgccccc cgcgtgggag acggccgccg gttacatcgg
     1861 cctgatgctg gcgctgaccc tgacgctgcg cctgggcgcg ctggtcagca acgtgctgca
     1921 ggcgcgcctg ttcgcgcgcc tgtccaagga cgtgatctac cgcctgcgcg tgcgcctgat
     1981 cgagcggctc aagcgcatcg ccctgggcga gtacgagaac ctcggcggcg gcaccgtcag
     2041 cgcgcacctg gtcaccgatc tggacaccct cgacaagttc gtcggcgaga ccctgagcaa
     2101 ggtcctggtg gcgttgctga cgttgaccgg caccgcggcg attttgatct ggatgcactg
     2161 gcagctggcc ctgctgatcc tgctgttcaa cccgctggtg atctacgcca cggtgcagct
     2221 gggcaagcag gtcaagcacc tgaagaagtt ggagaacgac agcacctcgc gcttcaccga
     2281 ggcgctgacc gagaccctgg aggcgatcca ggaagtgcgt gccggcaacc gccagggcta
     2341 tttcctcggt cgcctcggcc tgcgcgcccg cgaggtgcgc gactacgccg tcgcctcgca
     2401 gtggaagagc gatgcggccg ggcgcaccag cggcctgctg ttccagttcg gcatcgacgc
     2461 cttccgcgcc gccgccatgc tcaccgtgct gttctccgac ctcaccatcg gccagatgct
     2521 cgccgtgttc agctacctct ggttcatgat cggcccggtg gagcaactgc tcagcctgca
     2581 gtacgcctat tacgcggccg gcgg
//
LOCUS       DATIHC010000511         1596 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10756, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000511 DATIHC010000000
VERSION     DATIHC010000511.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1596
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10756"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(99..668)
                     /locus_tag="VLF16_08395"
     CDS             complement(99..668)
                     /locus_tag="VLF16_08395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008005523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV toxin-antitoxin system AbiEi family
                     antitoxin domain-containing protein"
                     /protein_id="HSX70941.1"
                     /translation="METRRELSQPIRRLYGGLDSLASPDRYLFTPSDIRALVPDISVE
                     AYRALLSRAAKEGRLERVCRGLYLYLPARPNSGLLLFHAAARLRAQEFNYISLETALS
                     DAGIISQIPLNWVTLMSSGRSSRIECGRWGTIEFVHTRQRPQDLSEQLVYDERCRLWR
                     ASPALALRDMKVAKRNLDLIDWSAAHELV"
     gene            complement(776..>1596)
                     /gene="cobJ"
                     /locus_tag="VLF16_08400"
     CDS             complement(776..>1596)
                     /gene="cobJ"
                     /locus_tag="VLF16_08400"
                     /EC_number="2.1.1.131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013789183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030789 - precorrin-3B
                     C17-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="precorrin-3B C(17)-methyltransferase"
                     /protein_id="HSX70942.1"
                     /translation="GLSLHLADSPQIAAAIGRPRGRLSVVGIGPGCAELLAPAVRRAL
                     DEAEDVLGYETYVTMAGPYRADQCLHASDNREELQRAAHAFELAALGRRVVMVSSGDP
                     GVFAMAAAVMEALEASSDARWQGVELEVLPGISAALAAAAKAGAPLGHDFCLISLSDN
                     LKPWAMIEKRLQHAAAADLAMAFYNPISKARPWQLGRALDLLRQHREPQTLVVLGRNI
                     GRPAEALRVLTLGELTPELVDMRTLVIIGSSQTRRFSRQGGGEWVYTPRWYPQA"
BASE COUNT          294 a          507 c          553 g          242 t
ORIGIN      
        1 gggccagcat gatgtcgtga tgcagcagct ccttctccac cacgacgcgc aggctcgcca
       61 ggtctccgtt ttggacgagg gcctggtcta ccaggcgatc aaacaagctc atgggctgca
      121 ctccagtcga tcaggtcgag attgcgcttc gccaccttca tatcgcgcag cgccagggct
      181 ggagatgcgc gccacaggcg gcagcgctcg tcatagacga gctgctcgct caggtcctgc
      241 ggcctctgcc gggtatgcac gaactcgatg gtgccccagc ggccgcattc gatacggctg
      301 gagcgccccg aggacatcag ggtgacccag ttcagcggga tctgcgaaat gatgccggcg
      361 tcgctgagtg cggtttccag gctgatgtag ttgaactcct gggcacgcag gcgggccgcc
      421 gcatggaaca gcagcaaccc ggaattgggc cgggccggaa ggtagagata gaggccgcgg
      481 cagacacgct ccagtcggcc ctccttggcc gcccgactga gcaaggcgcg ataggcctcg
      541 acggaaatat ccggcaccag ggctcggatg tccgaagggg tgaacaggta gcggtcgggc
      601 gaggccagcg agtccaggcc gccgtataaa cggcgaatgg gctggctgag ttcgcggcgc
      661 gtttccatgc gatagctcga cggaaagtaa caataactgt cacttagtgt agaaccgaaa
      721 actgcaagac tcaacagaaa ataacaataa cagtcatttt ctgttgagcc actcctcaag
      781 cctgcggata ccacctcggc gtatacaccc actccccgcc gccctggcgc gagaagcggc
      841 gggtctggct ggagccgatg atcaccaggg tgcgcatgtc gaccagctcc ggcgtcagct
      901 cgccgagggt gagcacacgc agggcctcgg ccgggcggcc gatgttgcgg ccgagcacca
      961 ccagggtctg cggttcgcgg tgctggcgca gcaggtcgag ggcgcggcca agctgccagg
     1021 ggcgcgcctt ggagatcgga ttgtagaagg ccatggccag gtcggcagcg gcggcgtgct
     1081 gcaggcgctt ctcgatcatc gcccagggct tgaggttgtc ggaaagggag atcaggcaga
     1141 agtcgtggcc cagcggcgca ccggccttgg cggcggcggc cagggcggcg gagatgccgg
     1201 gtagcacttc cagctcgacg ccctgccaac gtgcatcgct ggaagcctcc agcgcctcca
     1261 tcaccgcggc ggccatggcg aacacgccgg ggtcaccgga cgacaccatc actacgcgtc
     1321 gacccagcgc ggccagctcg aaggcgtggg cggcacgctg cagctcctcg cggttgtcac
     1381 tggcgtgcag gcactggtcg gcgcggtagg ggccggccat ggtcacgtag gtctcgtagc
     1441 cgagcacgtc ctcggcctcg tccagcgcgc ggcgcacggc cggggccagc agctcggcgc
     1501 agccggggcc gatgccaacc acgctgaggc gaccacgcgg gcggccaatg gcggcagcga
     1561 tttgcgggct atcggccaga tgcaaactca gtcccg
//
LOCUS       DATIHC010000512         2085 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36523, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000512 DATIHC010000000
VERSION     DATIHC010000512.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2085
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36523"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..725)
                     /locus_tag="VLF16_08405"
     CDS             complement(<1..725)
                     /locus_tag="VLF16_08405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imelysin family protein"
                     /protein_id="HSX70943.1"
                     /translation="MIRSPLALALLAMGLAACTPQDPQQRTSAALADGVLLPAYKAWH
                     DSSQQLAESSKAFCAGSQDLGAAQQAFLTDVASWAALQPLQVGPLAEGNRAWQVQFWP
                     DKKNLIQRQVENLLKRKPQLSQADVEKASVVVQGLTAYEYILFDAGIDLSDAAQKSRY
                     CPLLTAIGDHQQRLSAEVLGLWQAEDGMSAQLKEYPNTRYAEAPEAVAELLRTQANAL
                     DGLKKKLGAALGRQSKGLPQPYQA"
     gene            complement(737..>2085)
                     /locus_tag="VLF16_08410"
     CDS             complement(737..>2085)
                     /locus_tag="VLF16_08410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017362746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="di-heme oxidoredictase family protein"
                     /protein_id="HSX70944.1"
                     /translation="PAPAEPGEALSGGATSVRQSDQNAFSLPSANLAPSRRLDFAVGN
                     SFFRNPWVIAPTTTTARDGLGPLFNTNACQNCHVKDGRGHPPAPDALSAASMLVRLSV
                     PGDDSPAHAELRQRLGVVPEPVYGGQLQDMSNPGFAPEGKVRVEYDRHEVTLADGSVI
                     ELRKPRLVISKLGYGKMQPDTLFSARIAPPMIGLGLLEAIPEAAILAGEDPDDRDGDG
                     IRGVANRVWDDARGETVIGRFGWKAGQPSLNQQNVHAFSGDLGLTTSLLPRDDCTATQ
                     RDCLAAPHGGEPEVSDNILATVLFYTRNLAVPQRRDVDALEVRRGKQLFMDAGCNQCH
                     TPVFVTAADAAEPELANQTIRPYTDMLLHDMGEGLADGRPEFMASGSQWRTPPLWGIG
                     LTEAVTGHTQFLHDGRARNLLEAILWHGGEAESAKQAVVDLDASERGALLAFLNSL"
BASE COUNT          270 a          667 c          793 g          355 t
ORIGIN      
        1 gcctggtacg gctgcggcag gcccttgctc tggcggccga gggcggcacc gagcttcttt
       61 ttcaggccgt ccagggcgtt ggcctgggtg cgcagcagct cggccaccgc ttcgggggct
      121 tctgcgtagc gggtgttggg gtattccttg agctgcgcgc tcatgccgtc ctcggcctgc
      181 cacaggccga gcacctcggc ggacaggcgc tgctgatggt cgccgatggc ggtcagcagc
      241 gggcagtagc ggctcttctg cgcggcatcg gagaggtcga tgccggcgtc gaacaggatg
      301 tactcgtagg cggtcaggcc ctgcaccacc acgctggcct tctccacgtc ggcctggctc
      361 agctgcggct ttctcttcag caggttctcg acctggcgct gtatcaggtt cttcttgtcc
      421 ggccagaact gcacctgcca ggcgcgattg ccttcggcca ggggaccgac ctgcagcggc
      481 tgcagcgcgg cccagctggc gacgtcggtg aggaacgctt gctgcgcggc gcccaggtcc
      541 tggctgccgg cgcagaaggc tttggagctt tcggccaact gctggctgga gtcgtgccag
      601 gccttgtacg ccggcagcag cacgccatcg gccagggcgg cgctggtgcg ctgctgcggg
      661 tcctgcgggg tacaggcggc gaggcccatg gcgagcaggg cgagggcgag gggcgagcgg
      721 atcataccgg gctcctttac agggagttga ggaaagccag cagcgcaccg cgctcgctgg
      781 catcgagatc gacgacggcc tgtttggcgc tttccgcctc gccgccgtgc cagaggatgg
      841 cttccagcag gttgcgggcg cggccgtcgt gaagaaactg ggtgtggccg gtcaccgcct
      901 cggtgaggcc gatgccccac agtggcgggg tgcgccattg gctgccgctg gccatgaatt
      961 cggggcggcc atcggccagg ccttcgccca tgtcgtgcag cagcatatcg gtataggggc
     1021 gaatggtctg gttggccagt tcgggctcgg cggcatcggc ggcggtgacg aacaccggcg
     1081 tgtggcactg gttgcagccg gcgtccatga acagctgctt gccgcggcgc acttccagcg
     1141 cgtcgacgtc gcgccgttgc ggcaccgcca ggttgcgggt gtagaacagc acggtggcga
     1201 gaatgttgtc gctgacttcc ggctcgccgc cgtggggcgc ggcgaggcag tcgcgctgcg
     1261 tggcggtgca gtcgtcgcgg ggcagcaggc tggtggtcag gcccaggtcg ccggagaagg
     1321 cgtgtacgtt ctgctggttg aggctgggct ggccggcctt ccagccgaag cggccgatca
     1381 cggtctcgcc acgggcgtcg tcccacaccc ggttggccac gccgcggatg ccatcgccat
     1441 cgcggtcgtc cgggtcttcg ccggcgagaa tcgccgcctc gggaatcgcc tccagcaggc
     1501 cgaggccgat catcggcggg gcgatgcggg cggagaacag ggtgtccggc tgcatcttgc
     1561 cgtagcccag tttgctgatc accaggcgcg gcttgcgcag ctcgatcacg ctaccgtcgg
     1621 ccagggtgac ctcatgccgg tcgtattcga cccgcacctt gccttcgggg gcgaagccgg
     1681 ggttgctcat gtcctgcagc tggccgccgt acaccggctc cggcaccacg cccaggcgct
     1741 ggcgcagctc ggcgtgggcc ggcgaatcgt cgcccggcac cgacaggcgc accagcatgg
     1801 aggcggcgct gagggcgtcg ggcgctggag ggtgaccgcg gccgtccttg acgtggcagt
     1861 tctggcaggc gttggtgttg aacagcgggc ccagaccgtc gcgcgccgtg gtggtggtcg
     1921 gcgcgatgac ccaggggttg cggaagaaac tgttgccgac cgcgaagtcc aggcgccgtg
     1981 acggggccag gttggcggag ggcagagaaa acgcgttctg gtcgctctgg cgcacgctgg
     2041 tggcgccgcc cgagagcgcc tcgcccggtt cggccggggc cggct
//
LOCUS       DATIHC010000513         2652 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34122, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000513 DATIHC010000000
VERSION     DATIHC010000513.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2652)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2652)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2652
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34122"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(60..410)
                     /gene="erpA"
                     /locus_tag="VLF16_08415"
     CDS             complement(60..410)
                     /gene="erpA"
                     /locus_tag="VLF16_08415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HSX70945.1"
                     /translation="MSVESFTPTPLIFTQGAANKVKSLVDEEGNPRLKLRVFVTGGGC
                     SGFQYGFTFDEDVADDDTIVEREGVSLVVDPMSFQYLAGAEVDYQEGLEGSRFVINNP
                     NASTTCGCGSSFSI"
     gene            complement(575..1609)
                     /gene="argC"
                     /locus_tag="VLF16_08420"
     CDS             complement(575..1609)
                     /gene="argC"
                     /locus_tag="VLF16_08420"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HSX70946.1"
                     /translation="MVKVGIVGGTGYTGVELLRLLAQHPQAEVAVITSRSEAGVKVAD
                     MYPNLRGHYDELAFSVPDVATLGACDVVFFATPHGVAHALAGELLAAGTKVIDLSADF
                     RLQDAEEWAQWYGQPHGAPELLPEAVYGLPEVNREAIKGARLIAVPGCYPTATQLGLI
                     PLLEAGLADPSRLIANCASGVSGAGRGAKVGSLLCETSESMMAYSVKGHRHLPEISQG
                     LRRAAGGQVGLTFVPHLAPMIRGIHATLYATVADRGVDLQGLFEQRYANEPFVDVMPA
                     GSHPETRSVRGANVCRIAVHRPQGGELVVVLSAIDNLVKGASGQAVQNMNILFGLDER
                     LGLSHAALLP"
     gene            1829..2254
                     /gene="hemJ"
                     /locus_tag="VLF16_08425"
     CDS             1829..2254
                     /gene="hemJ"
                     /locus_tag="VLF16_08425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008089529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HSX70947.1"
                     /translation="MLYLWVKALHIIALVCWFAGLFYLPRLFVYHAMAEDQPSRERFC
                     VMERKLYRGIMNPSMIATLLFGAWMLYLNPAWLKMGWLHAKLLLVVLLVGYHHVCGAQ
                     LKRFALGENARGHVFYRWFNEVPVLFLLAIVILVVVKPF"
     gene            2275..>2652
                     /locus_tag="VLF16_08430"
     CDS             2275..>2652
                     /locus_tag="VLF16_08430"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016703 - oxidoreductase activity, acting
                     on single donors with incorporation of molecular oxygen,
                     incorporation of one atom of oxygen (internal
                     monooxygenases or internal mixed function oxidases)
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HSX70948.1"
                     /translation="MSLPALLDQRLRLPVVAAPMFLVSNPQLVLACCQSGIVGSFPAL
                     NQRESSGFKAWLEEIEAGLTPDSAPYAVNLIVHGSNPRLQADLAICVEHKVPVVITSL
                     GAVKEVVDAVHSYGGLVFHDVTTR"
BASE COUNT          440 a          899 c          855 g          458 t
ORIGIN      
        1 gggctcgacc agaaacgaaa aagccgcgcg gatgcgcggc ttttctttta cggaagcgtt
       61 cagatcgaga aggacgaacc gcaaccgcac gtcgtgctgg cgttggggtt gttgatcaca
      121 aagcgcgaac cttccagacc ttcctgataa tccacctcgg caccagccag atactggaag
      181 ctcatcgggt cgaccaccag gctgacgccc tcgcgctcaa cgatggtgtc gtcatcggcc
      241 acgtcctcat cgaaggtgaa gccgtactgg aagccggagc agccgccgcc ggtgacgaac
      301 acccgcagtt tcaggcgcgg attgccctct tcatcgacca ggctcttcac cttgttcgcc
      361 gcgccctggg tgaagatcag gggggttgga gtgaaggact cgacgctcat cttgctgttc
      421 tcccggcgcc aggcgcctgc ttacgtacca cacgggcggc gattatccgc ttacccgagc
      481 aaattggtca attattgcgc gacacgggca cgcccttgtc tgcttagatg ggcgcaccca
      541 cggcgaattc aagtcgccgc gggcggcgtc tcggtcaggg cagcagcgcg gcgtgggaca
      601 gacccaggcg ctcgtccagg ccgaagagga tgttcatgtt ctgcacggcc tggccggacg
      661 cgcccttgac cagattgtcg atggccgaca acaccaccac cagctcgccg ccctgcgggc
      721 gatgcacggc gatgcggcag acattggcac cgcgcacgct gcgggtctcc gggtggctgc
      781 cggccggcat cacgtcgacg aagggctcgt tggcgtagcg ctgctcgaac agcccctgca
      841 ggtccacgcc gcggtcggcg acggtggcgt acagggtggc gtggatgcca cggatcatcg
      901 gcgccaggtg cggcacgaag gtcaggccga cctggccacc cgcggcgcgg cgcaggccct
      961 ggctgatttc cggcaggtgg cggtggccct tgaccgagta ggccatcatg ctctcgctgg
     1021 tctcgcacag cagcgagccg accttggcgc cacggccggc gccgctgacg ccggaggcgc
     1081 agttggcgat cagacggctc gggtcggcca ggccggcttc gagcagcggg atcaggccga
     1141 gctgggtcgc ggtcgggtag cagcccggca ctgcgatcag gcgcgcgccc ttgatcgcct
     1201 cgcgattgac ctccggcagg ccgtacacgg cctcgggcag caactccggt gcgccatgcg
     1261 gctggccgta ccactgggcc cactcctcgg cgtcctgcag gcggaagtcg gcggacaggt
     1321 cgatgacctt ggtaccagcc gccagcagct cgccggccag ggcatgagcg acgccgtgcg
     1381 gcgtggcgaa gaacaccacg tcgcaggcgc ccagcgttgc cacgtccggc acgctgaagg
     1441 ccagctcgtc atagtggccg cgcaggttgg ggtacatgtc ggcgaccttg accccggcct
     1501 cggagcgcga ggtgatcacc gccacttccg cctgcgggtg ctgggccagc aggcgcagca
     1561 gttccactcc ggtgtaaccc gtgccgccga cgattccgac cttgaccatt gcataccccc
     1621 gctgcgtgac cgttgagaaa ggctgcgatg ataagtcgcc cggcagccgc ggccaacctc
     1681 gaagccttcg cgccgaccac ccattcggcc aagcggcggc atgcgtcaat ccatttcgac
     1741 gctgatccac ctaggttccc gtacgcaggt gacgcgcgag ggcggctttc tctactatcg
     1801 acgacaaatc tccgccggat gccatccaat gctctatctc tgggtcaagg ccctgcacat
     1861 cattgccctg gtctgctggt tcgccggcct gttctacctg ccgcgcctgt tcgtctacca
     1921 cgccatggcc gaggatcagc ccagccgcga gcgcttctgc gtcatggagc gcaagctgta
     1981 tcgcggcatc atgaacccct cgatgatcgc caccctgctg ttcggcgcct ggatgctcta
     2041 cctcaatccg gcctggctga agatgggctg gctgcacgcc aagctgctgc tggtggtact
     2101 gctggtcggc taccaccatg tctgcggcgc ccagctcaaa cgcttcgccc tcggcgagaa
     2161 tgcccgcggc cacgtgttct accgctggtt caacgaggtg ccggtgctgt ttctgctggc
     2221 catcgtgatc ctggtggtgg tgaaaccctt ctgataacga cgagaggaaa gaccatgtcc
     2281 ctgcccgccc tgctcgacca gcgtctgcgc ctgccggtgg tcgccgcgcc gatgttcctg
     2341 gtgtccaacc cgcagctggt actggcctgc tgccagagcg gaatcgtcgg cagcttcccg
     2401 gcgctgaacc agcgcgaaag cagcggcttc aaggcctggc tggaggagat cgaggccggc
     2461 ctgacgccgg actcggcgcc ctacgcagtc aacctcatcg tgcacggcag caatccgcgc
     2521 ctgcaggccg acctggcgat ctgcgtcgaa cacaaggtac cggtggtgat caccagcctc
     2581 ggcgcggtca aggaagtggt cgatgcggtg cacagctacg gtggcctggt gttccacgac
     2641 gtcaccaccc gc
//
LOCUS       DATIHC010000514         1643 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43445, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000514 DATIHC010000000
VERSION     DATIHC010000514.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1643
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43445"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(279..>1643)
                     /gene="polA"
                     /locus_tag="VLF16_08435"
     CDS             complement(279..>1643)
                     /gene="polA"
                     /locus_tag="VLF16_08435"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HSX70949.1"
                     /translation="VAGKGAKQILFSQVALDDATRYAAEDADVTLRLHQALWARLSAT
                     PSLVQVLKEIEMPLVPVLARIERNGALVDAKLLGQQSLELGEKMVALEREAYAIAEQE
                     FNLGSPKQLGAILYEKLGLPVLSKTATGQPSTAENVLAELAEQDYALPKVIMQYRSLS
                     KLKSTYTDRLPEQINPRTGRIHTSYHQAVAATGRLSSTDPNLQNIPIRTAEGRRIRQA
                     FVAPKGYKLMSADYSQIELRIMAHLAKDEGLLDAFRHDLDVHRATAAEVFGVALEEVT
                     NDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQAQAYIDRYFARYPGVLAYMERTREQ
                     ASQQGFVETLFGRRLYLPDIHAKNPALRKGAERTAINAPMQGTAADIMKRAMVAVDQW
                     LPQSGLDAKVILQVHDELVLEIREDQIDALRSGLLPLMSGAAELDVPLVVEAGVGDNW
                     DEAH"
BASE COUNT          259 a          525 c          540 g          319 t
ORIGIN      
        1 cgcctcgccg gcatgcggca aatcgcgggc aaaaaaaacc ccgggcttcg tatggggagg
       61 gagaagtccg gggttcaatt ctgaaccgct agggcggggt tcagagatct gccaacacta
      121 aaacacagct aggagcatcg aagggcttgc atgccattcg tgatctctga ccggccttct
      181 tggcggttag ttcagttttt cttaaatcgc atttccataa ccaaacgcaa attcaggtgt
      241 tttaggcata agccgctgcg accttatgcc gcagtgcttt aatgcgcctc gtcccagttg
      301 tcgcccacac cggcctccac caccagcggc acgtccagtt ccgccgcgcc actcatcagc
      361 ggcagcaggc cggacctcag cgcgtcgatc tgatcctcgc gtatttccag taccagttcg
      421 tcgtgcacct gcaggatgac cttggcatcc aggcccgact gcggcagcca ctgatccacg
      481 gcgaccatgg cgcgcttcat gatgtccgcc gcggtgccct gcatcggcgc gttgatcgcg
      541 gtgcgctcgg cgcccttgcg cagcgccggg ttcttcgcgt ggatgtccgg caggtacagg
      601 cggcggccga acagggtctc gacgaagcct tgctggctgg cctgctcgcg ggtgcgttcc
      661 atgtaggcga gcacgcccgg ataacgggcg aagtaacggt cgatgtaggc ctgggcctgc
      721 ttgcggtcga cgccgatctg cttggccagg ccgaaggcgc tcatgccgta gatcaggccg
      781 aagttgatcg ccttggcgct gcggcgctga tcgttggtca cctcttcgag cgccacgccg
      841 aacacctcgg cggcggtcgc gcggtgcaca tcgaggtcat gacggaaggc atccagcagg
      901 ccctcatcct tggccaggtg cgccatgatg cgcagctcga tctgcgaata gtccgccgac
      961 atcagcttgt agcccttcgg cgcgacgaag gcctggcgga tacgccggcc ctcggcggtg
     1021 cggatcggga tgttctgcag gttcgggtcg gtggaggaca ggcgcccggt cgccgcgacc
     1081 gcctggtggt agctggtgtg gatgcgcccg gtgcgcgggt tgatctgctc cggcagcctg
     1141 tcggtgtagg tgctcttcag cttgctcagc gagcggtact gcatgatcac cttgggcagc
     1201 gcgtaatcct gctcggccag ctcggccagc acgttctcgg cggtggacgg ctggccggtg
     1261 gcggtcttgc tcagcaccgg caggccgagc ttttcataga gaatggcgcc gagctgcttg
     1321 ggcgagccga gattgaattc ctgctcggcg atggcgtagg cctcgcgctc cagcgccacc
     1381 atcttttcgc ccagctcgag gctctgctgg ccgagcagct tggcgtcgac cagcgcgccg
     1441 ttgcgctcga tccgtgccag caccggcacc aggggcatct cgatctcctt gagcacctgg
     1501 accagcgacg gtgtggcaga gagtctggcc catagcgcct ggtgcaggcg cagggtgacg
     1561 tcggcgtcct cggcggcata gcgcgtcgcg tcgtccagcg ccacctgcga gaacaggatc
     1621 tgcttcgcgc ccttgccggc gac
//
LOCUS       DATIHC010000515         7261 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34124, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000515 DATIHC010000000
VERSION     DATIHC010000515.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 7261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7261
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34124"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..189)
                     /locus_tag="VLF16_08440"
     CDS             complement(<1..189)
                     /locus_tag="VLF16_08440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX70950.1"
                     /translation="MLGKGFRIVLASDGHFDRVEHHCQHGKWGWRKKYAWRPAQSTAH
                     NKIVDNQPSSSEIDVIGNQ"
     gene            127..846
                     /locus_tag="VLF16_08445"
     CDS             127..846
                     /locus_tag="VLF16_08445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011060180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HSX70951.1"
                     /translation="MFDSIEVPIAGQNDSETLAEHVFRRIQAAIVQGEIPPGSKISEP
                     ELARIYGISRGPLREAIHRLEGQKLLVRVPHVGARVVSLNHAELIELYEIRESLEGMA
                     CRLAAERMSRAEIDELRRVLELHEQDAAFKAGVGYYQQEGDFDFHYRIIQGSGNRTLT
                     QMLCGELYQLVRMYRLQFSTMPNRPHQAFAEHHRILDAIADRDGELAELLMRRHIGAS
                     KRNIERHYQEALANPSTRGES"
     gene            843..1742
                     /gene="prpB"
                     /locus_tag="VLF16_08450"
     CDS             843..1742
                     /gene="prpB"
                     /locus_tag="VLF16_08450"
                     /EC_number="4.1.3.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003240012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046421 - methylisocitrate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0019629 - propionate catabolic process,
                     2-methylcitrate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylisocitrate lyase"
                     /protein_id="HSX70952.1"
                     /translation="MTPLSTQSSAGQRFRQALAEEKPLQVIGAINANHALLAKRAGFR
                     AIYLSGGGVAAGSLGLPDLGINTLDDVLTDVRRITDVCDLPLLVDIDTGFGPSAFNIE
                     RTIKNLIKAGAAAAHIEDQVGAKRCGHRPGKEIVSCEEMVDRVRAAADAKTDPNFFLI
                     ARTDAIQAEGVDAAIERCQRYVEAGADGIFAEAAYDLPTYQRFVEALNVPILANITEF
                     GATPLFTRDELASVGVAIQLYPLSAFRAANKAAESVYTSIRQNGHQKDVIELMQTRAE
                     LYDRIGYHAFEQKLDALFAAGKK"
     gene            1800..2960
                     /gene="prpC"
                     /locus_tag="VLF16_08455"
     CDS             1800..2960
                     /gene="prpC"
                     /locus_tag="VLF16_08455"
                     /EC_number="2.3.3.16"
                     /EC_number="2.3.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050440 - 2-methylcitrate synthase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-methylcitrate synthase"
                     /protein_id="HSX70953.1"
                     /translation="MSAPEASTPGFKPKKSVALSGTAAGNTALCTVGRTGNDLHYRGY
                     DVLDFANRCEFEEIAHLLVHGKLPNVAELAGYKAKLKALRGLPAGVKAALETLPPSAH
                     PMDVMRTAVSVLGCLSPEKDDHNHPGARDIADKLMACLGSALLYWYHFSHNGKRIDVD
                     TDDDSIGGHFLHLLHGEKPRESWVRAMHTSLNLYAEHEFNASTFTSRVIAGTGSDIYS
                     AVTGAIGALRGPKHGGANEVAFEIQKRYDNPDEAEADIRARVEKKEVVIGFGHPVYTV
                     SDPRNKVIKEVAQQLSQEQSNTKMYDIAERLETIMWDIKKMFPNLDWFSAVSYHMMGV
                     PTAMFTPLFVIARTAGWSAHVIEQRIDGKIIRPSANYTGPEDLQFVPLKDRK"
     gene            2972..5527
                     /gene="acnD"
                     /locus_tag="VLF16_08460"
     CDS             2972..5527
                     /gene="acnD"
                     /locus_tag="VLF16_08460"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047456 - 2-methylisocitrate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0019629 - propionate catabolic process,
                     2-methylcitrate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe/S-dependent 2-methylisocitrate dehydratase
                     AcnD"
                     /protein_id="HSX70954.1"
                     /translation="MNRHYRKPLDGTPLDYFDAREAVDAIAPGAWAGLPYTSRVLAEQ
                     LVRRCEPDLLTPALEQLIYRKRDLDFPWYPARVVCHDILGQTALVDLAGLRDAIAEQG
                     GDPSKVNPVVPTQLIVDHSLAVEAPGFDPDAFEKNRAIEDRRNEDRFHFIEWTKTAFK
                     NVDVIPAGNGIMHQINLEKMSPVIQARGGVAFPDTCVGTDSHTPHVDALGVIAIGVGG
                     LEAESVMLGRASWMRLPDIVLALTEFLRKERVVGAYVEFFGEGADSLSIGDRATISNM
                     CPEYGATASMFYIDQQTIDYLKLTGREPEQVALVEHYAKTTGLWATALETAEYERVLE
                     FDLSGVVRNMAGPSNPHKRLPTSALAERGIAGDAQLAAAKAEEAAGQLPDGAVIIAAI
                     TSCTNTSNPRNVVAAGLLAKKANELGLIRKPWVKTSFAPGSKVAKLYLEEAGLLAELE
                     KLGFGIVAYACTTCNGMSGALDPVIQQEIIERDLYATAVLSGNRNFDGRIHPYAKQAF
                     LASPPLVVAYAIAGTVRFDIEQDVLGFDANGQPITLKDLWPSDEEIDAIVAASVKPEQ
                     FKQIYIPMFDLGTVQEAESPLYDWRPMSTYIRRPPYWEGALAGERTLKGMLPLAILPD
                     NITTDHLSPSNAILLDSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPQLVN
                     EMVVVGGAVKKGSLARVEPEGKVMRMWEAIETYMNRKQNLIIVAGADYGQGSSRDWAA
                     KGVRLAGVEVIVAEGFERIHRTNLVGMGVLPVEFKPGTTRLTLGLDGTETYDVEGDIS
                     PRCDLTLVVNRRDGEVVRVPVTCRLDTAADVSVYKAGGVLQRFAKDFLESSQG"
     gene            5645..6832
                     /gene="prpF"
                     /locus_tag="VLF16_08465"
     CDS             5645..6832
                     /gene="prpF"
                     /locus_tag="VLF16_08465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0019629 - propionate catabolic process,
                     2-methylcitrate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-methylaconitate cis-trans isomerase PrpF"
                     /protein_id="HSX70955.1"
                     /translation="MAHQPQIKIPATYIRGGTSKGVFFRLQDLPESCQTPGEARDRLF
                     MRVIGSPDPYSAHIDGMGGATSSTSKCVILSKSSRPDHDVDYLYGQVSIDKAFVDWSG
                     NCGNLSTAAGAFAIHAGLVDPSRIPQNGTCVVRIWQANIHKTIIAHVPVSDGQVQETG
                     DFELDGVTFPAAEIVLEFVDPSDDGEEGGAMFPTGNLVDDLEVPGVGTFKATMISAGI
                     PTVFVNAEDIGYQGTELREDINGDPAQLARFEQIRVAGALRMGLIKTADEALKRQHTP
                     KIAFVSAPKRYQASSGKVVEPGEVDLLVRALSMGKLHHAMMGTCAVAIGTAAAIPGTL
                     VNLAADGGEREAVRFGHPSGTLRVGAEARQVNGEWTVTKAIMSRSARILMEGWVRVPG
                     DSF"
     gene            complement(6849..>7261)
                     /locus_tag="VLF16_08470"
     CDS             complement(6849..>7261)
                     /locus_tag="VLF16_08470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017638901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HSX70956.1"
                     /translation="ALYLVYLGIKTWRSTEFGGLQSIDGERIEQKPATAPIARLMLNE
                     FLVGISNPKAILLFAAIFPQFIKPDQPAAEQFLYLGTTYLLAELCVASLTYALFGLQI
                     RRLVRSRKGVSRLNKGTGAFFVGAGGLMLGVNNH"
BASE COUNT         1315 a         2502 c         2289 g         1155 t
ORIGIN      
        1 ttgattgccg attacgtcga tttccgagct gctgggttga ttgtcgacaa tcttgttgtg
       61 cgcggttgac tgtgcaggcc tccaggcgta ctttttgcgc catccccact tgccgtgttg
      121 acaatgatgt tcgactcgat cgaagtgccc atcgctggcc aaaacgattc ggaaaccctt
      181 gccgagcacg tattccgtcg catccaggcg gccatcgtgc agggcgagat cccgcccggc
      241 agcaagattt ccgaaccgga gctggcacgt atctacggca tcagtcgcgg cccgctgcgc
      301 gaggcgatcc accgtctgga agggcagaag ctgctggtgc gagtgcccca cgtcggcgcg
      361 cgagtggtct cgctcaacca tgccgagctg atcgagctgt acgagatccg cgaatccctg
      421 gaaggcatgg cgtgccgcct ggccgccgag cgcatgagtc gggccgagat cgacgagctg
      481 cgccgggtgt tggagctgca tgagcaggac gccgcgttca aggccggcgt cggctactac
      541 cagcaggaag gcgacttcga cttccactac cggatcatcc agggcagcgg caaccgcacc
      601 ctgacccaga tgctctgcgg cgagctgtac caactggtgc gcatgtatcg cctgcagttc
      661 tcgaccatgc cgaaccgccc gcaccaggcc ttcgccgaac accaccgcat tctcgatgcc
      721 atcgccgacc gtgacggcga gctggccgag ctgctgatgc gccgtcacat cggcgcctcc
      781 aagcgcaaca tcgagcgcca ctaccaggaa gcgctcgcca acccgtccac acgaggtgag
      841 tcatgactcc gttgtctacc cagagcagcg ccggccagcg tttccgtcag gccctggccg
      901 aagagaaacc gctgcaggtc atcggcgcga tcaacgccaa ccacgcgctg ctggccaagc
      961 gcgccggctt ccgcgccatc tacctgtccg gtggcggcgt cgcggcgggc tcgctgggcc
     1021 tgccggacct gggcatcaac acgctggacg acgtgctcac cgacgtgcgt cgcatcaccg
     1081 acgtctgcga tctgccgttg ctggtcgaca tcgacaccgg cttcggtccc tcggccttca
     1141 acatcgagcg caccatcaag aacctgatca aggccggcgc cgccgccgcc catatcgagg
     1201 accaggttgg cgccaagcgc tgcggccacc gtccgggcaa ggaaatcgtc tcctgcgagg
     1261 agatggtcga ccgcgtgcgc gccgccgccg atgccaagac cgacccgaac ttcttcctga
     1321 tcgcccgtac cgacgccatc caggccgagg gcgtggacgc cgccatcgag cgctgccagc
     1381 gctacgtgga ggcgggcgcc gacggcatct tcgccgaggc cgcctacgac ctgccgacct
     1441 accagcgctt cgttgaggcg ctgaatgtgc cgatcctggc caacatcacc gagttcggcg
     1501 cgaccccgct gtttacccgc gacgagctgg cctcggtcgg cgtggccatc cagctctacc
     1561 cgctgtccgc cttccgcgcc gccaacaagg ccgcggaaag tgtctacacc tcgatccgcc
     1621 agaacggcca tcagaaggat gtgatcgagc tgatgcagac ccgcgccgag ctgtacgacc
     1681 gcatcggcta ccacgccttc gagcagaagc tcgacgcgct gttcgccgcc ggcaagaagt
     1741 gacgacacgc aggtccgcct gcggatgaac aagaaacgaa tgatgaggag agacccgcga
     1801 tgagcgcccc agaagcgagc acccctggct tcaagccgaa gaagtccgtg gccctgagcg
     1861 gcaccgccgc cggcaacacc gccctgtgca ccgtcggccg caccggcaac gacctgcact
     1921 accgcggtta tgacgtgctc gatttcgcca accgctgcga attcgaggag atcgcccacc
     1981 tgctggtcca cggcaagctg cccaacgtgg ctgagctggc cggctacaag gccaagctga
     2041 aagctctgcg cggcctgccg gccggggtga aggccgccct ggaaaccctg ccgccgtcgg
     2101 cccacccgat ggacgtgatg cgcactgccg tgtccgtgct cggctgcctg tcgccggaga
     2161 aggacgacca caaccatccg ggcgcccgcg acatcgccga caagctgatg gcctgcctgg
     2221 gctccgcgct gctgtactgg taccacttca gccacaacgg caagcgcatc gacgtggaca
     2281 ccgacgacga ctccatcggc ggccacttcc tgcacctgct gcacggcgag aagccgcgcg
     2341 agtcctgggt gcgcgccatg cacacctcgc tcaacctgta cgccgagcac gagttcaacg
     2401 cctcgacctt caccagccgc gtgatcgccg gcaccggttc cgacatctac tcggccgtca
     2461 ccggcgcgat cggcgcgctg cgcggcccca agcacggcgg cgccaacgaa gtggcctttg
     2521 agatccagaa acgctacgac aacccggacg aggccgaggc cgacatccgc gcgcgcgtcg
     2581 agaagaaaga agtggtgatc ggcttcggcc acccggtcta caccgtgtcc gacccgcgca
     2641 acaaggtgat caaggaggtc gcccagcagc tgtcgcagga gcagtccaac accaagatgt
     2701 acgacatcgc cgagcgcctg gagaccatca tgtgggacat caagaagatg ttccccaatc
     2761 tcgactggtt cagcgccgtg agctaccaca tgatgggcgt gcccaccgcc atgttcaccc
     2821 cgctgttcgt catcgcccgc accgccggct ggtccgcaca cgtcatcgag cagcgcatcg
     2881 acggcaagat catccgcccg agcgccaact acaccggccc cgaagacctg cagttcgtgc
     2941 cgctcaagga ccgcaagtga tgagcagccc gatgaatcgc cactaccgca aacctctgga
     3001 cggcaccccg ctggattatt tcgacgcccg cgaggcggtc gatgccatcg cgcccggtgc
     3061 ctgggccggt ttgccctata cctcgcgcgt gctggccgag cagctggtgc gccgttgcga
     3121 gcctgatctg ctgacgcccg cgctggagca actgatctac cgcaagcgcg acctggactt
     3181 cccctggtat ccggcgcggg tggtctgcca tgacatcctc ggccagaccg cgctggtcga
     3241 cctggccggc ctgcgtgacg ccattgccga gcagggtggc gacccttcca aggtcaatcc
     3301 ggtggtgccg acccaactga tcgtcgacca ctcgctggcc gtagaagcgc cgggcttcga
     3361 tccggacgcc ttcgagaaga accgcgccat cgaggatcgt cgcaacgagg accgcttcca
     3421 cttcatcgag tggaccaaga cggccttcaa gaacgtcgac gtgatccccg ccggcaacgg
     3481 catcatgcac cagatcaacc tggagaagat gagcccggtg atccaggcgc gcggcggcgt
     3541 ggccttcccg gacacctgtg tgggcaccga ctcgcacacc ccgcacgtgg acgccctggg
     3601 cgtgatcgcc atcggcgtcg gcggcctgga agccgagagc gtcatgctcg gccgcgcctc
     3661 ctggatgcgc ctgcccgaca tcgtcctcgc cctgaccgag ttcctgcgca aagagcgggt
     3721 ggtcggcgcc tatgtcgagt tcttcggcga aggggcggac agcctgtcga tcggcgatcg
     3781 cgcgaccatc tccaacatgt gcccggaata cggcgccacg gcttcgatgt tctacatcga
     3841 ccagcaaacc attgattacc tcaagctgac cggccgcgag ccggagcagg tagcgctggt
     3901 agagcactac gccaagacca ccggcctgtg ggccaccgcg ttggagacgg cggagtacga
     3961 gcgcgtgctc gagttcgatc tgtccggcgt ggtgcgcaac atggccggtc cgagcaatcc
     4021 gcacaagcgc ctgccgacct cggccctggc cgagcgcggc atcgccggtg atgcccagct
     4081 ggccgccgcc aaggccgaag aggctgccgg tcagctgccg gatggcgcgg tgatcatcgc
     4141 cgccatcacc agctgcacca acacctccaa cccgcgcaat gtggtggccg ccggcctgct
     4201 ggcgaagaag gccaacgagc tgggcctgat tcgcaaaccg tgggtcaaga cttcgttcgc
     4261 tcccggttcg aaggtcgcca agctgtacct ggaggaggcc ggtctgctgg cggagctgga
     4321 gaagctcggc ttcggcatcg tcgcctatgc ctgcaccacc tgtaacggca tgtccggcgc
     4381 gctggacccg gtgatccagc aggaaatcat cgagcgcgac ctgtatgcca ccgcggtatt
     4441 gagcggcaac cgcaacttcg acggccgtat ccacccctac gccaaacagg ccttcctggc
     4501 ctcgccgccg ctggtagtgg cctacgccat cgccggtacc gtgcgcttcg atatcgagca
     4561 ggatgtgctg ggctttgatg cgaacggcca gccgatcacc ctcaaggacc tgtggccgag
     4621 cgacgaggaa atcgatgcca tcgtcgcggc cagcgtgaag ccggagcagt tcaagcagat
     4681 ctacatcccg atgttcgatc tgggcaccgt gcaggaggcc gagagcccgc tgtacgactg
     4741 gcgtccgatg tccacctaca tccgccgtcc gccgtattgg gaaggcgccc tggccggcga
     4801 gcgcacgctc aagggcatgc tgccgctggc gatcctgccg gacaacatca ccaccgatca
     4861 cctgtcgccg tccaacgcca tcctgctgga ctcggccgcc ggcgaatacc tggcgaagat
     4921 gggcctgccg gaggaggact tcaactccta cgccacccac cgcggcgacc acctgactgc
     4981 ccagcgcgcc accttcgcca atccgcagct ggtcaacgag atggtcgtgg tcggcggcgc
     5041 ggtgaagaag ggctcgctgg cccgcgtcga gccggagggc aaggtgatgc gcatgtggga
     5101 agcgatcgag acctacatga accgcaagca gaacctgatc atcgtcgccg gcgccgacta
     5161 cggtcagggc tcgtcccgcg actgggcggc caagggcgtg cgcctggccg gcgtggaagt
     5221 gatcgtggcc gaaggcttcg agcgcatcca ccgcaccaac ctggtgggca tgggcgtgct
     5281 gccggtggag ttcaagccgg gcaccacccg cctgaccctg gggctggacg gcaccgagac
     5341 ctatgacgtc gaaggcgata tttcgccgcg ttgcgacctg acactggtgg tcaatcgccg
     5401 cgacggcgaa gtggtacggg taccagtcac ctgccgtctg gacaccgccg ccgacgtcag
     5461 cgtgtacaag gccggtggcg tgttgcagcg tttcgccaag gacttcctcg agtcgtccca
     5521 gggctgatgc atcgccgggg tgacgcaagt cgccccggtc cttctgcccg tagcccggat
     5581 gtaatccggg gtgcctcctt tcccggattg cctccggcta ctttgactca gccaggaccc
     5641 catcatggct catcaacccc agatcaagat tcccgccacc tacatacggg gcggcaccag
     5701 caagggcgtg ttcttccggc tgcaggacct ccccgagtcc tgccagacgc ccggcgaggc
     5761 ccgcgatagg ttgttcatgc gcgtgatcgg cagccccgat ccttactcgg cgcacatcga
     5821 cggcatgggc ggcgccacct cgtcgacgtc caagtgcgtg atcctgtcga agagcagtcg
     5881 gcccgatcac gacgtcgact acctctatgg ccaggtctcc atcgacaagg ccttcgtcga
     5941 ctggagcggc aactgcggca acctgtcgac cgccgctggc gccttcgcca ttcatgccgg
     6001 gctggtcgat ccgtcgcgca tcccgcagaa cggcacctgt gtggtgcgca tctggcaggc
     6061 caacatccac aagaccatca tcgcccacgt gccggtcagc gacggccagg tgcaggaaac
     6121 cggcgacttc gagctggatg gcgtgacctt cccggcggcg gagattgtcc tggagttcgt
     6181 cgatccgtcc gacgatggcg aggagggcgg cgccatgttc cccaccggca atctggtcga
     6241 cgacctggag gtgccgggtg tcggcacgtt caaggcgacc atgatcagcg ccggcatccc
     6301 caccgtgttc gttaatgccg aggacatcgg ctaccagggc accgagctgc gcgaggacat
     6361 caacggcgat ccggcccagc tcgcgcgctt cgagcagatc cgcgtggccg gcgctctgcg
     6421 catgggcctg atcaagaccg ccgacgaggc gctcaagcgc cagcacacgc cgaagatcgc
     6481 cttcgtcagt gcgcccaagc gctaccaggc ctcgagcgga aaggtggtgg agccgggtga
     6541 ggtcgacctg ctggtgcgcg cgctgtccat gggcaagctg caccacgcca tgatgggtac
     6601 atgcgcggtg gccatcggta cggcggcggc catacccggc accctggtca atctggcggc
     6661 agacggcggc gagcgtgaag ccgtgcgctt cggccatccc tccggcacct tgcgcgtcgg
     6721 tgccgaggcg cgtcaggtca atggcgagtg gacggtgacc aaggccatca tgagtcgcag
     6781 cgcgcgaatc ctgatggaag gctgggtgcg ggtaccgggc gacagcttct gagaagccgc
     6841 cacgggcgtc agtgattgtt gacgcccagc atcaacccgc cggcgccgac gaagaaggcg
     6901 ccggtgccct tgttcaggcg gctcacgccc ttgcgactgc gcaccagacg gcggatctgc
     6961 aggccgaaca gcgcgtaggt cagtgaggcg acgcacagct cggccagcag gtaggtggtg
     7021 cccaggtaga gaaactgctc ggccgccggc tgatccggtt tgatgaactg cgggaaaatc
     7081 gcggcgaaca gcaaaatggc cttgggattg ctgatgccga ccaggaactc gttgagcatc
     7141 agcctggcga tcggcgccgt cgccggcttc tgctcgatcc gttcgccatc gatggactgc
     7201 aggccgccga attccgtgct gcgccaggtc ttgatgccca ggtacaccag atacagcgca
     7261 c
//
LOCUS       DATIHC010000516         1636 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_41320, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000516 DATIHC010000000
VERSION     DATIHC010000516.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1636)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1636)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1636
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41320"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..944
                     /gene="dprA"
                     /locus_tag="VLF16_08475"
     CDS             <1..944
                     /gene="dprA"
                     /locus_tag="VLF16_08475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014850946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HSX70957.1"
                     /translation="LGLPAACAEPRRDAEIRERAAHALGWLEQPGRHLLMWDDPAYPE
                     LLAELDDAPPLLFVEGDPALLERPQLAMVGSRRASRTGLDTACAFARSLAGGGFVVTS
                     GLALGIDGAAHQGALEVGGATVAVLGTGLERLYPQRHVGLAARIVEGGGALVSELPLD
                     CPPQAGNFPRRNRIISGLSLGVLVVEASPSSGSLITARLAAEQGREVYAIPGSIHHPG
                     ARGCHQLIREGAALVESVDDILQALGGWQRLPPTASEAPRCESPLLIQLRAAPQTSEG
                     LARACGLDLGETLAALTELELEGLVVCEAGRWVHRAV"
     gene            986..1543
                     /locus_tag="VLF16_08480"
     CDS             986..1543
                     /locus_tag="VLF16_08480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5/YciO/YrdC/YwlC family protein"
                     /protein_id="HSX70958.1"
                     /translation="MQSSWRIQRVARVVREGGVIAYPTEAVWGLGCDPWNEAAVDRLL
                     ALKERPVHKGLILVADSIEQFDFLLDDLPERWIDRLASTWPGPNTWLVPHQNRLPRWI
                     TGQHDSVALRVSDHPLVRDLCALTGPLVSTSANPAGRPSARSRLRVEQYFPRQLDAVL
                     GGALGGRKNPSLIRDLRTGDVIRPS"
BASE COUNT          217 a          576 c          598 g          245 t
ORIGIN      
        1 ccctcggcct gccggccgcg tgcgccgagc cgcggcgcga cgccgaaatc cgcgagcgcg
       61 ccgcacatgc gctgggctgg ctcgagcaac cggggcgaca tctgctgatg tgggacgatc
      121 cggcctaccc cgagctgctc gccgagctgg acgatgcccc gccgctgttg ttcgtcgaag
      181 gtgatccggc gctgctcgag cgtccgcagc tggccatggt cggcagccgc cgcgcctcgc
      241 gcacggggct ggacaccgca tgcgcgttcg cccgcagcct ggccggcggc ggcttcgtcg
      301 tcaccagcgg gctggcgctc ggcatcgacg gcgcggcgca tcagggcgcg ctggaagtcg
      361 gcggcgctac cgtggcggtg ctcggcacag ggctggagcg cctctatccg cagcgtcacg
      421 tcggcctggc cgcgcgcatc gtcgagggcg gaggtgcgct ggtctcggag ctgccgctgg
      481 actgcccgcc ccaggcgggc aatttccccc gccgcaaccg catcatcagt ggcctctcgc
      541 tgggcgtgct ggtggtcgag gcgagcccgt ccagcggctc gctgatcacc gcgcggctgg
      601 ccgccgagca ggggcgcgag gtctatgcga ttcccggctc cattcaccat cccggcgctc
      661 gtggttgtca tcagctgatc cgcgaaggcg cggccctggt ggagagcgtg gatgacatcc
      721 tgcaggcgct gggcggctgg cagcggctgc cgcccaccgc gagcgaggcg ccacgctgcg
      781 aaagcccgct gctgattcag ctgcgcgccg cgccgcagac cagcgaaggt ctggcccggg
      841 cctgcggcct ggacctgggc gagaccctcg ccgccttgac cgagctggag ctggaaggct
      901 tggtggtgtg cgaggccggg cgctgggtac accgcgcggt ctgagctggg taaactcgcc
      961 gccagacaga gcatcggggg cgagcatgca aagcagttgg cgcatacagc gagtggcacg
     1021 ggtggtacgc gaaggcgggg tgatcgccta ccccaccgag gccgtctggg gcctgggttg
     1081 tgacccctgg aacgaggccg cggtggaccg cctgctggcg ctcaaggagc gtccggtgca
     1141 caagggcctg atcctggtgg cggacagcat cgagcagttc gattttctcc tcgacgatct
     1201 gcccgagcgc tggatcgacc gtctggccag cacctggcca ggccccaaca cctggctggt
     1261 gccgcatcaa aatcgcctgc cgcgctggat caccgggcag cacgacagcg tcgccctgcg
     1321 cgtcagcgac cacccgctgg tgcgcgatct ctgcgccctc accggcccgc tggtgtccac
     1381 ctcggccaac ccggccgggc ggccctcggc gcgctcgcgc ctgcgggtcg agcaatactt
     1441 tccgcgccag ctggacgccg tgctcggcgg cgccctgggc gggcgcaaga accccagcct
     1501 gatccgtgat ctgcgtacgg gtgacgtgat ccgcccgtcc tgagttgcat agggtgcgtc
     1561 gtacgggcgc ctgctcgggc gcgcacggcg cacctacgga tcaaggcagc agaatggtcg
     1621 agccggtggt ctgtcg
//
LOCUS       DATIHC010000517         3737 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13013, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000517 DATIHC010000000
VERSION     DATIHC010000517.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3737
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13013"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..891
                     /gene="murA"
                     /locus_tag="VLF16_08485"
     CDS             <1..891
                     /gene="murA"
                     /locus_tag="VLF16_08485"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008760 - UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HSX70959.1"
                     /translation="LHIRGLEAMGAEILVEGGYIKAKAPAGGLRGAHFFFDIVSVTGT
                     ENIMMAASLAKGRTVLENAAREPEVVDLANFLNAMGAKISGAGTDTIVIEGVERLGGG
                     RYSVMPDRIETGTYLVAAAATGGRVKLKDTDPTILEAVLAKLQEAGAEINTGKDWIEL
                     DMKGKRPKAVNVRTAPYPAFPTDMQAQFISLNAIAEGTGTVIETVFENRFMHVYEMNR
                     MGAQILVEGNTAIVTGVPALKGAPVMATDLRASASLVIAALVAEGETLIDRIYHIDRG
                     YECIEEKLQLLGAKIRRVPG"
     gene            1044..1670
                     /gene="hisG"
                     /locus_tag="VLF16_08490"
     CDS             1044..1670
                     /gene="hisG"
                     /locus_tag="VLF16_08490"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HSX70960.1"
                     /translation="MLTIALSKGRILDDTLPLLAAAGIEPTENPEKSRKLIIPTTQDD
                     VQLLIVRATDVPTYVEHGAADLGVAGKDVLMEYGGQGLYEPLDLQIANCKLMTAGKVG
                     APEPKGRLRVATKFVNVAKRYYAEQGRQVDVIKLYGSMELAPLVGLADKIIDVVDTGN
                     TLRANGLEPQELIAHISSRLIVNKASMKMQHGRIQALIETLRSAVESR"
     gene            1855..3165
                     /gene="hisD"
                     /locus_tag="VLF16_08495"
     CDS             1855..3165
                     /gene="hisD"
                     /locus_tag="VLF16_08495"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HSX70961.1"
                     /translation="MTAPVAIRRLNAADQDFARHLDHLLSWESVSDDAVNHRVLEIID
                     AVRSRGDAAVVEYTQRFDGVEAQSMAELILPRERLELALTRISAEQRAALEKAAERVR
                     LYHERQKQDSWTYTEADGTVLGQKVTPLDRAGLYVPGGKASYPSSVLMNAIPAKVAGV
                     PEVVMVVPTPRGEINEIVLAAACVAGVDRVFTIGGAQAVAALAYGTESVPPVDKIVGP
                     GNIYVATAKRHVFGKVGIDMIAGPSEILVVCDGQTDPDWIAMDLFSQAEHDEDAQAIL
                     VSPDAAFLDRVAESIAKLLPTLERESIARTSIEGRGALIQVADMTQAIEVANRIAPEH
                     LELSVENPEQYLPQIRHAGAIFMGRYTAEALGDYCAGPNHVLPTSGTARFSSPLGVYD
                     FQKRSSIIHCSAEGASELGKVASVLARGESLTAHARSAEYRIKP"
     gene            3280..>3737
                     /locus_tag="VLF16_08500"
     CDS             3280..>3737
                     /locus_tag="VLF16_08500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSX70962.1"
                     /translation="MSKFWSPFVKDLVPYVPGEQPKLAKLVKLNTNENPYGPSPKAVA
                     AMQAELGDNLRLYPDPNSDRLKQAVADYYDVSTAQVFVGNGSDEVLAHAFHGLFQHGK
                     PLLFPDVTYSFYPVYCGLYGVPYEALALDEQFQIRVEDYARPNGGIIFPNP"
BASE COUNT          681 a         1260 c         1179 g          617 t
ORIGIN      
        1 ctgcacatcc gcggcctcga agccatgggc gccgagattc tggtggaagg tggctacatc
       61 aaggccaagg ccccggcggg cggcctgcgt ggcgcgcact tcttcttcga tatcgtcagc
      121 gtgaccggta ccgagaacat catgatggcc gcgtccctgg ccaagggtcg caccgtactg
      181 gaaaacgccg cgcgcgagcc ggaggtggtc gacctggcca acttcctcaa cgccatgggc
      241 gccaagatca gcggcgccgg caccgacacc atcgtcatcg agggtgtcga gcgcctcggt
      301 ggtggtcgct acagcgtgat gcccgaccgt atcgagaccg gcacctacct ggtggccgct
      361 gccgccaccg gtggccgtgt gaaattgaag gacaccgatc cgaccatcct cgaggctgtg
      421 ctggccaagc tgcaggaggc tggcgccgag atcaacaccg gcaaggactg gatcgagctg
      481 gacatgaagg gcaagcgtcc gaaggccgtc aacgtgcgca ccgcgccgta cccggcgttc
      541 ccgaccgaca tgcaggccca gttcatctcc ctcaacgcaa tcgccgaggg cacgggcacc
      601 gtgatcgaga cggtgttcga gaaccgcttc atgcacgtct acgagatgaa ccgcatgggc
      661 gctcagatct tggtagaggg caacaccgcc atcgtcaccg gcgtgccggc gctcaagggc
      721 gctccggtca tggccaccga cctgcgtgcc tccgccagcc tggtgatcgc cgcgctggtg
      781 gccgagggcg agaccctgat cgaccgcatc taccacatcg accgtggtta cgagtgcatc
      841 gaggaaaaac tgcagttgct cggcgccaag atccgccgcg taccgggcta acgactctat
      901 ttgcgatctg atgtgcgtcg gccatgcgtc gttagaaaca ggctcggaag gctcatttac
      961 cactcgtaaa ctccgcttcc tcgcctgttt tgcctagcct ggctctagct cgcgagaccg
     1021 taaacagact ctaagggcgt ttcatgctga ccatcgcgct gtccaagggc cgcatcctcg
     1081 acgacaccct gccgctgctc gccgcggcag gcatcgagcc gaccgagaat ccggaaaaga
     1141 gccgcaagct gatcatcccg actacccagg atgacgtgca gctgctgatc gtgcgcgcca
     1201 ccgacgtgcc gacctatgtc gagcacggcg ccgccgacct cggtgtggcc ggcaaggacg
     1261 tgctgatgga gtacggcggc cagggcctgt acgagccgct cgatctgcag atcgccaact
     1321 gcaagctgat gaccgccggc aaggtcggcg cgccggagcc gaaaggccgc ctgcgcgtcg
     1381 ccaccaagtt cgtcaacgtg gccaagcgtt actacgccga gcagggtcgt caggtcgacg
     1441 tgatcaagct gtacggctcc atggagctgg ccccgctggt gggcctggcc gacaagatca
     1501 tcgatgtggt cgacaccggc aacacgctgc gtgccaacgg cttggagccc caggagctga
     1561 tcgcccacat cagctcgcgg ctgatcgtca acaaggcctc gatgaagatg cagcatggcc
     1621 gcattcaggc gctgatcgag accctgcgca gcgcggtcga gtcacgatga ccgccaaaga
     1681 tggtggaaat gtcgaaaatg caggagcatt tttcgaccac cgaagctgat accacttcga
     1741 cgcgaccatc ggtcgcgtcc gcctatccgt gtcatagcca cttttctcgg gcgtccatac
     1801 ggtgggcttg gtagcctagc gacgcccgag catttgccaa tcaagaggcc cgctatgacc
     1861 gctcccgttg ccatccgccg actcaatgcc gctgaccagg atttcgctcg acacctggat
     1921 catctgctga gctgggaaag cgtttcggac gatgcggtca atcatcgcgt gctggagatc
     1981 atcgacgccg tgcgttcgcg tggcgacgcc gccgtggtcg agtacaccca gcgtttcgac
     2041 ggcgtcgagg cgcagtccat ggccgagctg atcctgccgc gcgagcgcct ggaactggcc
     2101 ctgacccgca tcagcgccga gcagcgcgcc gcgctggaga aggccgccga gcgcgtgcgc
     2161 ctgtaccacg agcggcagaa gcaggattcc tggacctaca ccgaggccga cggcacggtg
     2221 ctggggcaga aggtcactcc gctggaccgc gccggcctgt atgtgcccgg cggcaaggcc
     2281 tcgtacccgt cgtcggtgct gatgaacgcc atccccgcca aggtcgccgg cgtgccggag
     2341 gtggtcatgg tggtgccgac cccgcgtggc gagatcaacg agatcgtcct cgccgcggcc
     2401 tgcgtggccg gcgtcgaccg cgtgttcacc atcggtggtg cccaggccgt ggccgcgctg
     2461 gcctacggca ccgagagcgt gccgccggtg gacaagatcg tcggccccgg caacatctat
     2521 gtggccaccg ccaagcgcca cgtattcggc aaggtcggta tcgacatgat cgccggcccg
     2581 tcggagatcc tcgtggtctg cgacggccag accgacccgg actggatcgc catggacctg
     2641 ttctcccagg ccgaacacga cgaggacgcg caggccatcc tggtcagccc ggacgccgcc
     2701 ttcctcgacc gcgttgccga gagcatcgcc aagctgctgc cgaccctgga gcgcgagtcc
     2761 atcgcccgca cctccatcga gggccgcggc gcgctgattc aggtcgccga catgacccag
     2821 gccatcgagg tggccaaccg tatcgcgccg gaacacctgg agctgtcggt ggagaacccc
     2881 gagcagtacc tgccgcagat ccgccatgcc ggtgccatct tcatgggccg ctataccgcg
     2941 gaggcgctgg gcgattactg cgcaggtccg aaccacgtac tgccgacctc cggcaccgcg
     3001 cgcttctcct cgccgctggg cgtgtacgac ttccagaagc gctcgtcgat catccactgc
     3061 tcggccgaag gtgcgtccga gctgggcaag gtcgcctccg tgctggcccg cggcgagtcg
     3121 ctgaccgccc acgcgcgcag cgccgagtac cgcatcaagc cctgatgcct gctttgtagg
     3181 gtggacaacg ctttgcgtgt ccaccgtttt gtccggtgga aaacgcttcg cggttttcca
     3241 ccctacgcaa actgaatgaa ttcgaggaga gaagggcgga tgagcaaatt ctggagcccc
     3301 ttcgtcaagg acctggtgcc ctacgtgccg ggtgagcaac ccaagctggc caagctggtc
     3361 aagctcaaca ccaacgagaa cccctacggc ccgtcgccca aggcggtggc ggccatgcag
     3421 gccgagctgg gcgacaacct gcgcctgtac ccggacccga acagcgatcg cctcaagcag
     3481 gcggtggccg actactacga cgtgagcact gcccaggtgt tcgtcggcaa cggctcagac
     3541 gaggtgctgg cgcatgcctt ccacggcctg ttccagcacg gcaagccgct gctgttcccg
     3601 gacgtcacct acagcttcta tccggtctac tgcggtttgt atggcgtgcc ctacgaggcg
     3661 ctggcgctgg acgagcagtt ccagatccgc gtggaagact acgcgcggcc caacggcggg
     3721 atcatcttcc ccaaccc
//
LOCUS       DATIHC010000518         2212 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17085, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000518 DATIHC010000000
VERSION     DATIHC010000518.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2212
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17085"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..479)
                     /locus_tag="VLF16_08505"
     CDS             complement(<1..479)
                     /locus_tag="VLF16_08505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015503132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system membrane subunit TssM"
                     /protein_id="HSX70963.1"
                     /translation="MKDFLKKTAAFFRKTWVWSLCLVLVLALLIWFVGPLLAVADSKF
                     WASAASRLVSISLLFLAWGLFIVFLSWRANVRKKAEADDVDAQERLRREGLISEEQVE
                     LRGRFKQALRTLKTSSLYRGRSEKWRNDLPWYLLLGPEGSGKTSLLDFSGLDFPLNKG
                     "
     gene            complement(486..1352)
                     /gene="icmH"
                     /locus_tag="VLF16_08510"
     CDS             complement(486..1352)
                     /gene="icmH"
                     /locus_tag="VLF16_08510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007934552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IVB secretion system protein IcmH/DotU"
                     /protein_id="HSX70964.1"
                     /translation="MIREAQDKTVVLNRQGEGAAPRGPLTDFATPRFEQLEERMVYAA
                     RMRPAEVFNISFNPLVAAASLLLSEVVRLKTNAAAENFDALNERLNVAIKLFEHRALQ
                     EGVDGGQVMAARYVLCTVVDEAVVTTPWGNESAWSQMSLLSTFHNETFGGEKFFQLLE
                     HLSRNPVKHLAMLELMYICLSLGFEGKYRVLPRGMLELEAIRDSLYRQIRQLRGDIPR
                     ELSPHWEGLKEGRRRLVRIVPGWLVAVATVAGLALLYAGFSWVLHEQRGTVLQPYQAA
                     EVTPAPVPSNQG"
     gene            complement(1355..>2212)
                     /gene="tssK"
                     /locus_tag="VLF16_08515"
     CDS             complement(1355..>2212)
                     /gene="tssK"
                     /locus_tag="VLF16_08515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssK"
                     /protein_id="HSX70965.1"
                     /translation="DQAFVKLKVAEIFDTSPDGVIGLDQDFSPTFLHVQASSYLLSCL
                     KEVISLLGHRGDILAERVRAAGKLGNTEVGDFLMLQLVNRYEPQLRHYLSLEQMHPEL
                     LYRELVGLLGELATFAADHKRPRLDGRYLHNDQAASFRKLMEALRQVLSMVLEQHAIE
                     LPLQQRQYGIQVSPLQDHALLGSATFVLAATAQCESEELRKRLPAHLKIGAVERIRQL
                     VNLHLPGIKVKPLPVAPRQIPFHAGKTYFALEFSAEELAQLESSGGFAFHVSGDFAGL
                     ELKFWAIRS"
BASE COUNT          352 a          731 c          769 g          360 t
ORIGIN      
        1 cccttgttca gcgggaagtc caggccggag aagtccagca ggctggtctt gccgctgccc
       61 tcggggccga gcagcaggta ccagggcagg tcgttgcgcc acttctcgct gcgcccgcgg
      121 tacaggctgg aggtcttcag ggtgcgcagg gcctgcttga agcggccgcg cagctccacc
      181 tgctcctcgc tgatcaggcc ctcgcggcgc aggcgctcct gggcgtcgac gtcgtccgcc
      241 tcggccttct tgcgcacgtt ggcgcgccag ctgaggaaaa cgatgaacag gccccaggcg
      301 aggaacaaca ggctgatgct caccaggcgg ctggccgccg aggcccagaa cttggagtcg
      361 gccaccgcca gcagcgggcc gacgaaccag atcagcaggg ccagcaccag caccaggcac
      421 aggctccaga cccaggtctt gcggaagaac gccgcggttt tcttgaggaa gtccttcatc
      481 tcacatcatc cctgattgct tggtacgggg gccggggtaa cttcggccgc ctgatagggt
      541 tgcagcacgg tgccgcgctg ctcgtgcagc acccagctga agccggcgta gagcagcgcc
      601 aggccggcca ccgtggccac cgccaccagc cagccgggga cgatgcgcac gaggcgacgg
      661 cggccttcct tgaggccctc ccagtgcggc gacagctcgc gcgggatgtc gccgcgcagc
      721 tggcggatct gccggtacag gctgtcgcgg atcgcctcca gctcgagcat gccgcgcggc
      781 agcacgcggt acttgccctc gaagccgagc gacaggcaga tgtacatcag ctcgagcatg
      841 gccaggtgct tgaccgggtt gcgcgacagg tgctcgagca gctggaagaa cttctcgccg
      901 ccgaaggttt cattgtggaa ggtcgacagc aggctcatct gcgaccaggc gctctcgttg
      961 ccccagggcg tggtcaccac ggcctcgtcg accacggtgc acagcacgta gcgcgcggcc
     1021 atcacctggc cgccgtccac cccttcctgc agggcgcggt gctcgaacag cttgatcgcc
     1081 acgttgaggc gctcgttgag ggcgtcgaag ttctccgccg cggcgttggt cttcagccgc
     1141 accacctcgg acagcagcag cgaggcggcc gccaccagcg ggttgaagct gatgttgaag
     1201 acttccgccg ggcgcatgcg cgcggcgtag accatgcgct cctcgagctg ctcgaagcgc
     1261 ggcgtggcga agtcggtgag cgggccgcgc ggtgcggcgc cttctccctg gcggttgagg
     1321 acgacggtct tgtcctgtgc ttccctgatc atgttcagct cctgatcgcc cagaatttca
     1381 gctcaagccc ggcgaagtcg ccggacacgt ggaaggcaaa gccaccggag ctctccagct
     1441 gcgccagttc ctcggcgctg aactccaggg cgaagtaggt cttgccggca tggaacggga
     1501 tctgccgcgg tgccaccggc agcggtttca ccttgatgcc cggcaggtgc aggttgacca
     1561 gctggcggat gcgctccacc gcgccgatct tcaggtgcgc cggcaggcgc ttgcgcagct
     1621 cttcggactc gcactgggca gtggcggcga gcacgaaggt ggcgctgccg agcagcgcgt
     1681 ggtcctgcag cggcgagacc tggataccgt actgacgctg ctgcagcggc agctcgatgg
     1741 cgtgctgctc cagcaccatc gacagcacct ggcgcagcgc ctccatcagc ttgcggaagc
     1801 tggcggcctg gtcgttgtgc aggtagcggc cgtccaggcg cgggcgcttg tggtcggcgg
     1861 cgaaggtggc cagttcaccg agcaggccga ccagctcgcg gtacagcagc tccgggtgca
     1921 tctgctccag ggagaggtag tggcgcagct gcggctcgta gcggttgacc agctgcagca
     1981 tgaggaagtc gccgacctcg gtgttgccca gcttgccggc ggcgcgcacg cgctcggcga
     2041 ggatgtcgcc acggtggccg agcaggctga tcacttcctt gaggcaggac agcaggtagc
     2101 tggacgcctg cacgtgcagg aaggtcgggc tgaagtcctg gtcgaggccg atcaccccgt
     2161 ccgggctggt gtcgaagatc tccgccacct tgagcttcac gaaggcctgg tc
//
LOCUS       DATIHC010000519         1571 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10775, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000519 DATIHC010000000
VERSION     DATIHC010000519.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1571
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10775"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1571
                     /locus_tag="VLF16_08520"
     CDS             <1..>1571
                     /locus_tag="VLF16_08520"
                     /inference="COORDINATES: protein motif:HMM:NF014819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase N-terminal-like
                     domain-containing protein"
                     /protein_id="HSX70966.1"
                     /translation="ILINVMAGRIANRLDFGGVNFATDAACASSLAAVYQGINELLSG
                     RSDLVIAGGVDTVQGPFGYLCFSKTQALSPRGRCRTFDASADGIVISEGIAMVALKRL
                     SDAERDGDRVYAVIKGMAGSSDGKAKGLTAPLPAGQLRAMRRAYQQAGFGPDSVGLFE
                     AHGTGTVAGDTAELDSTTSLLREVGSRPAQAVVGSVKTMIGHTKATAGVAGMIKAALA
                     LHHKVLPSHLGVQSPNPVLKKEDSPLCVLDEAQPWLTRAELPRRAAVSAFGFGGTNFH
                     AVLEEYAGEYRPWLEQGVSDAWSAELLLWRAGTREQLQDQLSQLQAQLAAPGKVALRD
                     IACYLSDNLGQGEQSLALVVGSLDELADKLAKAQRRLAGEEMIDPSVVLGDSRVEPGQ
                     VALLFPGQGSQNIYMLRELAVLFPSVADTLAEADALLAAGTERFASKPLSQFIHPRAC
                     YDEASRQAASAALTSTDVAQPALGAVEAGLLRLLRELGIDGDMLAGHSYGEFVALFAA
                     GQIDFAGLMGLSEARG"
BASE COUNT          232 a          567 c          538 g          234 t
ORIGIN      
        1 atcctgatca acgtgatggc cgggcgtatc gccaaccgcc tggacttcgg cggcgtcaac
       61 ttcgccaccg acgcggcctg cgcctcgtcc ctggcggccg tctaccaggg catcaacgaa
      121 ctgctctccg gtcgcagcga cctggtcatc gccggtggcg tggacaccgt gcagggtccg
      181 ttcggctacc tctgcttcag caagacccag gccctgtcgc cacgcggccg ctgccgcacc
      241 ttcgacgcat cggccgacgg catcgtgatc tccgagggca tcgccatggt cgcgctgaag
      301 cgcctcagcg atgccgagcg cgacggcgac cgcgtctacg ccgtgatcaa gggcatggcg
      361 ggcagcagcg acggcaaggc caagggcctc accgccccgc tgcccgcggg ccagctgcgc
      421 gccatgcgcc gcgcctacca gcaggccggt ttcggcccgg acagcgtcgg cctgttcgag
      481 gcccacggca ccggcaccgt ggccggcgac accgccgagc tggacagcac cacctcgctg
      541 ctgcgcgagg tgggcagccg tccggcccag gcggtggtcg gctcggtgaa gaccatgatc
      601 ggtcatacca aggccaccgc cggcgtggcc ggcatgatca aggcggccct ggccctgcac
      661 cacaaggtgc tgccgtcgca tctgggcgtg cagtcgccca accccgtatt gaagaaggaa
      721 gacagcccgc tctgcgtgct cgatgaggcg cagccctggc tgacccgcgc cgagttgccg
      781 cggcgtgccg cggtgagcgc cttcggcttc ggcggcacca atttccacgc ggtgctcgag
      841 gaatatgccg gcgagtaccg gccctggctc gaacagggcg tcagcgatgc ctggagcgcc
      901 gagctgctgc tgtggcgcgc cggcacccgc gaacagttgc aggaccagct gtcccagctg
      961 caggcgcagc tggcggcgcc gggcaaggtg gcgttgcgcg atatcgcctg ttacctgagc
     1021 gacaacctcg gccagggcga gcaaagcctg gcgttggtcg ttggcagcct ggacgagctg
     1081 gccgacaagc tggccaaggc ccagcggcgc ctagccggcg aggagatgat cgatccgtcc
     1141 gtcgtcctcg gcgacagccg cgtcgagccc ggccaggtcg ccctgctgtt ccccggccag
     1201 ggctcgcaga acatatatat gttgcgtgaa ctggcggtgc tgttcccctc cgtcgccgac
     1261 accctggccg aggccgatgc actgctggcc gccggcaccg agcgtttcgc cagcaagccg
     1321 ctgagccagt tcatccaccc acgcgcctgc tatgacgaag cttcccgtca ggcggcgagc
     1381 gcggctctga ccagcaccga cgtggcccag ccggccctcg gtgcggtaga ggccggcctg
     1441 ctgcgcctgc tgcgtgagct gggcatcgac ggcgatatgc tcgccggcca cagctacggc
     1501 gagttcgtcg cgctgttcgc cgccgggcag atcgacttcg ccggcctgat gggcctgtcg
     1561 gaggcccgcg g
//
LOCUS       DATIHC010000520         2216 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8522, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000520 DATIHC010000000
VERSION     DATIHC010000520.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2216
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8522"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..552
                     /locus_tag="VLF16_08525"
     CDS             <1..552
                     /locus_tag="VLF16_08525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSX70967.1"
                     /translation="ALQAFGAVHGLVNCAGVAPAEKVIGRNGAHGLDSFRRTIEINLI
                     GSFNMLRLAAEAMVQNQPNTDGERGVIINTSSVAAFDGQMGQAAYSASKGGVAAMTLP
                     AARDLARSGIRVMCIAPGIFETPMMAGMPQEVQDSLAANVPFPPRLGRPAEYAALVRH
                     IVENAMLNGEVIRLDGALRMAAK"
     gene            563..1747
                     /locus_tag="VLF16_08530"
     CDS             563..1747
                     /locus_tag="VLF16_08530"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HSX70968.1"
                     /translation="MHDDPVVIVGAARTPMGGFLGDFKDMTAAELGAAAIRATLERAG
                     VAFEAVDEAIMGCVLQAGQGQAPARQAVLGAGLPQSVVCSTVNKMCGSGMKAAMFGHD
                     LLLAGVARVVLAGGMESMSGAPYLLERARGGYRMGHGRVLDHMFLDGLEDAYDKGRLM
                     GTFAEDCAQSYGFSREEQDAFAIASLTRAQRAIADDRFAEEIVQVEARAGRQRVMVSQ
                     DEQPPKARLDKIATLKPAFREGGTVTAANASSISDGAAALLLMRRSEAERRGLTPLAR
                     IVGHASAARAPNLFTTAPVGAIQRLLANTGWSLDEVDLFEINEAFAVVPMVAMRDLGI
                     PHDKLNVHGGACALGHPIGASGARILVTLLSALRQYGLKRGLAAVCIGGGEATAMAIE
                     LY"
     gene            1838..>2216
                     /locus_tag="VLF16_08535"
     CDS             1838..>2216
                     /locus_tag="VLF16_08535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HSX70969.1"
                     /translation="MLPNEEELLIRDTARQFAQERLKPFAAEWDREHRFPAEALKEMA
                     DLGFMGMLVPEEWGGAQTGHRAYAMALEEIAAGDGACSTIMSVHNSVGCMPILKFGSD
                     EQKQRFLQPLASGAMLGAFALTEP"
BASE COUNT          339 a          773 c          780 g          324 t
ORIGIN      
        1 gccctacagg ccttcggtgc cgtgcacggg ctggtcaact gcgcgggcgt ggcgccggcc
       61 gagaaggtca tcggacgcaa tggtgctcac ggcctggaca gcttccgccg gaccatcgag
      121 atcaacctga tcggcagctt caacatgctg cgcctggccg ccgaggccat ggtgcagaac
      181 cagccgaaca ccgacggcga gcgcggcgtg atcatcaaca cctcctcggt ggccgccttc
      241 gacgggcaga tgggccaggc cgcgtactcg gcttccaagg gcggcgtggc tgccatgacc
      301 ctgccggcgg cgcgcgacct ggcgcgctcg ggcatccgcg tgatgtgcat cgcgcccggc
      361 atcttcgaga cgccgatgat ggccggcatg ccccaggagg tgcaggactc cctggccgcc
      421 aacgtgccgt tcccgccgcg cctggggcgc ccggccgagt acgctgcgct ggtccgccac
      481 atcgtcgaga acgccatgct caacggcgag gtcatccgcc tggatggcgc gctgcgcatg
      541 gcggccaagt gaggacatga gcatgcacga cgatccggtg gtaatagtgg gcgccgcgcg
      601 cacgcccatg ggcggctttc tcggcgactt caaggacatg acggcggccg agctgggcgc
      661 cgcggcgatt cgcgccacgc tcgagcgcgc cggcgtggcc tttgaggcgg tggacgaggc
      721 gatcatgggc tgcgtgctgc aggccggcca gggccaggcc ccggcgcgcc aggcggtgct
      781 cggtgccggg ttgccgcagt cggtggtctg ctcgacggtg aacaagatgt gcggctcggg
      841 catgaaggcc gccatgttcg gccatgatct gctgctggcc ggcgttgccc gcgtggtgct
      901 ggccggcggc atggagagca tgtcgggcgc gccctatctg ctggagcgcg cccgcggcgg
      961 ctaccgcatg ggccatggca gggtgctcga ccacatgttt ctcgatggtc tggaagacgc
     1021 ctacgacaag ggccggctga tgggcacctt cgccgaggac tgcgcgcaga gctacggctt
     1081 cagccgcgaa gagcaggacg ccttcgccat cgcctcgctg acccgcgccc agcgcgccat
     1141 cgccgacgac cgcttcgccg aggaaatcgt gcaggtcgaa gccagggccg gccgccagcg
     1201 ggtgatggtg agtcaggacg agcagccgcc caaggcgcgc ctggacaaga tcgccaccct
     1261 caagccggcc ttccgcgagg gcggcacggt gaccgcggcc aatgccagct cgatctccga
     1321 cggcgccgcc gcgctgctgt tgatgcgccg gtccgaggcc gagcgccgtg gtctgacgcc
     1381 gctggcgcgg atcgtcgggc atgcttcggc ggcccgggcg ccgaacctgt tcaccaccgc
     1441 gccggtcggt gcgatccagc gcctgctggc caataccggc tggtcgctgg acgaggtcga
     1501 cctgttcgag atcaacgagg cgttcgccgt ggtgcccatg gtggccatgc gcgacctcgg
     1561 cattccccac gacaaactca acgtgcacgg cggcgcctgc gccctgggcc atccgatcgg
     1621 cgcttccggc gcgcgcatcc tggtgaccct gctgtccgcg ctgcgccagt acggcctcaa
     1681 acgcggcctg gcggccgtgt gcatcggcgg tggcgaggcc accgcaatgg ccatcgaatt
     1741 gtattgaggc ggccgccgtc gccagagcgt agggtgcgcc gcgcgcaccg aaatcagtca
     1801 atcagaggtg cgcacggcgc accctacgga gccagccatg ctgcccaacg aagaagaact
     1861 gctgatccgt gacaccgccc gccagttcgc ccaggaacgg ctgaaaccct tcgccgccga
     1921 gtgggaccgc gagcatcgct tccctgctga agccttgaag gaaatggccg acctcggctt
     1981 catgggcatg ctggtgccgg aggagtgggg cggcgcgcag accggccacc gggcctacgc
     2041 catggccctg gaggaaatcg ccgccggcga cggcgcctgc tccaccatca tgagcgtgca
     2101 caactcggtg ggctgcatgc ccatcctcaa gttcggcagc gacgagcaga agcagcgctt
     2161 cctccagccg ctggccagcg gcgccatgct cggcgccttc gccctcaccg agccgc
//
LOCUS       DATIHC010000521         4658 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31806, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000521 DATIHC010000000
VERSION     DATIHC010000521.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4658
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31806"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..573)
                     /locus_tag="VLF16_08540"
     CDS             complement(<1..573)
                     /locus_tag="VLF16_08540"
                     /inference="COORDINATES: protein motif:HMM:NF013867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CheR family methyltransferase"
                     /protein_id="HSX70970.1"
                     /translation="MRQAEPLCSPRLLELLASKVHQHLGMDFSGARQPELQRRLRLLA
                     EDQAEDTATWLESLAFAEWDDARIERLIPAFTVGETYFRRDPEALDWLARQHLAPLLQ
                     RRRAAGQRHLRVWSAACCTGEEAYSLLFLLDDLLGAERGQWSLEVLASDINAGFLSRA
                     EQGRYGQNAFRRNEEAFRQRHFQAEAQAWRV"
     gene            complement(560..1036)
                     /locus_tag="VLF16_08545"
     CDS             complement(560..1036)
                     /locus_tag="VLF16_08545"
                     /inference="COORDINATES: protein motif:HMM:NF013731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HSX70971.1"
                     /translation="MDRLSVLPFRLAGQHLAVPLENVIRVIPALQCLPLPGAPPTVLG
                     LANLRGQVVPVVDLARRFAWPATSVGLWQPFIWLRSRTRELLIPVERVDTATECEPAD
                     VIPADQPQVPSERVRGVLRTATGMLLIQDVEQVLSDADEAELQRALDSRGANHAPG"
     gene            1236..1895
                     /locus_tag="VLF16_08550"
     CDS             1236..1895
                     /locus_tag="VLF16_08550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HSX70972.1"
                     /translation="MALELYAHPFSSYCQKVLIALYENATPFEYHRLAPEQPQHMERL
                     AELWPMRRFPLLVDNGRAVMESSIIIEHLQLRYPGPVRLIPDDPALALEARFMDRVFD
                     NYVSTPQQKCVFDALRAPDERDAYGVGEARRLLDTAYAWLERRLQGRTWAAGEQFSLA
                     DCAAAPFLFYADWTQPIGESFPTVRAYRQRLLQRPSFARAVDEARPYRAFFPLGAPDR
                     D"
     gene            2010..2459
                     /locus_tag="VLF16_08555"
     CDS             2010..2459
                     /locus_tag="VLF16_08555"
                     /inference="COORDINATES: protein motif:HMM:NF024865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSX70973.1"
                     /translation="MKKLALSLLCLFAPLAHADAALTEANIRALYDRVAADASERDID
                     GTLAHMSEDVRIHITAAKGSIELDADKYRQLLKQGWSGLDSYRMEVDIESIDIADDGQ
                     SATVKDTTHETLSMQGHEMSAGMQETASLRLIDGEPKIVRIEAIIQP"
     gene            complement(2547..3995)
                     /locus_tag="VLF16_08560"
     CDS             complement(2547..3995)
                     /locus_tag="VLF16_08560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003290335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HSX70974.1"
                     /translation="MKPALPRISLLFVAVLMAGCAVGPDYLRPQSAPSAEFKQAAGWK
                     AAVPADTALRGDWWKLYGDTELDALIERLNANNQNLASAEAQYRQARALVRGARAAFF
                     PTLGFNTGVTRAGQGGGDSTISTSDGVSVSGANASNVSKSYEASLGVSWELDLWGKLR
                     RQLESENAGLDASAADLAAVRLSQQSELVQNYLQLRVMDQQKRLLDETVAAYKQAYRI
                     AENQYRAGIVPKSDVTQALTQLKGTEAEAVDLEYQRAQLEHAIAVLVGVAPSEFELAV
                     RDAVPALPSVPVSLPSTLLERRPDVAAAERRVISANAEIGVAKAAYYPELSLSATGGY
                     RSGGLDNWISSPNRFWSIGPSFAMTLFDGGLIRSQVEQAEASYDQTVADYRQTVLTSF
                     REVEDYLVQLSVLEREAVVQQEALDAARESLRLMLNQYRAGTVEFTDVVSVQTTALSN
                     ERTRLTLQGSRLTASVQLIAALGGGWQGLPEE"
     gene            complement(3992..>4658)
                     /locus_tag="VLF16_08565"
     CDS             complement(3992..>4658)
                     /locus_tag="VLF16_08565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014820187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSX70975.1"
                     /translation="DVTQDQANAAIRQAVAEVNLPTEVQGMLGGTGGQFEKEAQGQPV
                     MILIALLVVYIVLGILYESYIHPLTILSTLPSAGVGALLAILLTGSEFSLVSLLGLFL
                     LIGVVKKNAILMIDLALELERDQKLSPQESIRRACLLRFRPIMMTTLAAMLGALPLLL
                     GQAEGAEMRQPLGLAIVGGLVLSQLLTLYTTPVVYLYLDRLRHRVNRWRGVRSDAALE
                     TPL"
BASE COUNT          735 a         1593 c         1593 g          737 t
ORIGIN      
        1 tacccgccag gcctgagcct cggcctggaa atggcgctgg cggaaggcct cttcgttgcg
       61 gcggaaggcg ttctgcccgt agcggccctg ttcggcccgg gacagaaagc ccgcattgat
      121 gtcgctggcc agcacttcca gcgaccactg gccgcgctcg gcaccgagca ggtcgtcgag
      181 caggaacagc aggctgtagg cctcctcgcc ggtgcagcag gccgcgctcc atacgcgcag
      241 gtggcgctgc cccgccgcgc gccggcgctg cagcagcggc gccaggtgct ggcgggccag
      301 ccagtcgagc gcctcggggt cgcggcggaa gtaggtctcg ccgacggtga acgcgggaat
      361 cagccgctcg atacgcgcat cgtcccactc ggcgaaggcc aggctctcca gccaggtcgc
      421 cgtgtcctcg gcctggtctt cggcgagcag acgcaggcgc cgctgcagct cgggttggcg
      481 cgcaccggag aaatccatgc ccaggtgctg gtgcaccttg ctcgccagca actccagcag
      541 gcgcggcgag cagagtggct cagcctggcg catggttcgc tcctcgagaa tccagggcgc
      601 gctgcagctc ggcctcgtcg gcgtcggaca gcacctgctc gacgtcctgg atcaacaaca
      661 tgcccgtcgc cgtgcgcagc acgccgcgca cccgttcgct gggcacttgt ggctggtcgg
      721 caggtatcac gtctgcgggc tcgcactcgg tcgcggtgtc cacccgttcc accggtatca
      781 gtagttcgcg ggtgcggctg cgcagccaga tgaacggctg ccacaggcca accgaagtcg
      841 ccggccaggc gaagcggcgt gcgaggtcca ccacgggcac gacttgccca cgcaggttgg
      901 ccaggccgag cacggtcggc ggcgcgccgg gtagaggcag gcattgcaaa gccggaatca
      961 cccggatgac gttctcgaga ggtaccgcaa gatgctgccc cgctagccga aagggcagca
     1021 cggataatct gtccatagag gcatccagtt gccgctagca tcttttcttt accctagccc
     1081 agcgtgccgg gacgtccagc gaaccggacc tcctggtcag gttaccggcg ctgcggcgcg
     1141 caccgtctgt gacgggcgtc gaatgttacg gggattgtcg atcgggtcct gcgccgttcg
     1201 accagtagca attcccacca atggagactc gccacatggc cctggaactc tacgctcacc
     1261 ccttctcctc ctactgccag aaggtgctga tcgcactcta cgagaacgcc acgcccttcg
     1321 agtaccaccg actggcgccg gagcagccgc aacacatgga gcgcctggcc gagctgtggc
     1381 ccatgcggcg cttcccgttg ctggtcgaca atggccgggc ggtgatggag tccagcatca
     1441 tcatcgagca cctgcagctg cgctatccgg ggccggtgcg gctgattccg gacgatcccg
     1501 cgctggccct ggaggcgcgg ttcatggacc gggtgttcga caactatgtc tccactccgc
     1561 agcagaagtg cgtgttcgat gcgctgcgcg cgccggatga gcgcgatgcc tacggcgtcg
     1621 gcgaggcgcg gcgcctgctg gacaccgcct acgcctggct ggaacggcgc ctgcagggcc
     1681 gcacctgggc cgccggcgag cagttcagcc tggccgactg cgcggcggcg cccttcctgt
     1741 tctatgcgga ctggacccag ccgatcggcg agtccttccc gaccgtacgc gcctaccgcc
     1801 agcgtctgct gcagcggcct tcctttgccc gcgcggtgga cgaggcgcgg ccgtatcggg
     1861 cgtttttccc gctgggggcg ccggatcggg attgatcgtc ggcaaggcct ggaatgatgc
     1921 gcgtggcgca ccctgtgtcc ctggtccttt cgcttatcgg tgcgatgccg ctagcatcgg
     1981 cgatccctgt ccctgcccga ggaacctcga tgaagaagct cgcgctgtcc ctgctctgcc
     2041 tgttcgcccc gctcgcccac gccgacgcgg cgctgaccga ggccaatatc cgcgcgctgt
     2101 acgaccgggt cgccgcggac gcctccgaac gcgatatcga cggcaccctg gcgcacatga
     2161 gcgaggacgt gcgcattcac atcaccgccg ccaagggcag catcgagctg gatgcggaca
     2221 agtaccggca gttgctcaaa cagggctgga gtgggctgga cagctaccgc atggaggtcg
     2281 acatcgagtc gatcgacatc gccgacgacg gccagagcgc cacggtcaag gacaccacgc
     2341 acgaaaccct gagcatgcag ggccacgaga tgagcgccgg catgcaggag accgccagcc
     2401 tgcgcctgat cgacggcgag ccgaagatcg tgcgcatcga ggcgatcatc cagccgtaat
     2461 cgtccggtgc gccagcggcg ctgaagcgcg gcgtccgatc aaccctgggg tgcgccatga
     2521 cacgaagtta gtgcgcgcgg cgcaccctac tcctcgggca gcccctgcca gccaccgccg
     2581 agggcagcga tcagctgcac gctggcggtc aggcggctgc cctgcagcgt caggcgggtg
     2641 cgctcgttgg acagcgcggt agtctgcacg ctgaccacgt cggtgaattc cacggtgccg
     2701 gcgcggtact ggttgagcat cagccgcagc gattcgcggg cggcgtccag cgcctcctgc
     2761 tgcaccaccg cctcgcgctc cagcacggac agctgcacca ggtagtcctc cacttcgcgg
     2821 aagctggtca gcaccgtctg ccggtagtcg gcgacggtct ggtcgtagct ggcctcggcc
     2881 tgctcgacct gagagcggat caggccgccg tcgaacaggg tcatggcgaa ggacgggccg
     2941 atcgaccaga agcggttggg cgagctgatc cagttgtcca ggccgccgct gcggtagccg
     3001 ccggtggccg acaggctcag ctccgggtag taggcggcct tggccacgcc gatctcggcg
     3061 ttggcggaga tcacccggcg ctcggcggcg gccacgtccg ggcgcctttc gagcagggtc
     3121 gacggcaggc tgaccggcac gctgggcagc gccggcaccg cgtcgcgcac cgccagctcg
     3181 aactcggacg gcgccacgcc gaccagcacg gcgatggcat gctcgagttg ggcacgctgg
     3241 tattccaggt ccaccgcctc ggcctcggtg cccttgagct gggtcagcgc ctgagtgacg
     3301 tcggacttgg gcacgatgcc ggcgcggtac tggttctcgg cgatgcgata ggcctgtttg
     3361 taggcggcca ccgtctcgtc gagaagacgc ttctgctggt ccatcacccg caattgcagg
     3421 tagttctgca ccagttccga ctgctggctg aggcgcacgg cggccaggtc ggccgcgctg
     3481 gcatcgagtc cggcattttc cgactccagc tggcggcgca gcttgcccca caggtccagc
     3541 tcccagctca cgcccaggct ggcctcgtag ctcttcgaca cgttcgaggc gttggcgccg
     3601 ctgacgctca ctccatcgct ggtgctgatg gtgctgtcgc ctccgccctg ccccgcgcgt
     3661 gtcacgccgg tgttgaagcc gagagtggga aagaacgccg cccgcgcccc gcgcaccagg
     3721 gccctggcct ggcggtactg ggcctcggcg ctggccaggt tctggttgtt ggcgttgagg
     3781 cgctcgatca gcgcgtccag ctcggtgtcg ccgtagagtt tccaccagtc gccacgtaac
     3841 gcggtatcgg ctggaacggc ggccttccag ccggcggcct gcttgaactc ggccgagggc
     3901 gcactctgcg ggcgcaggta gtcggggccg acggcgcagc cggccatcag cacggcgacg
     3961 aacaggagcg aaatacgggg caatgcgggc ttcatagcgg agtttccaga gcggcgtcgc
     4021 tgcgcacgcc gcgccagcgg ttgacccgat ggcgcaggcg gtcgagatac agatagacca
     4081 ccggggtggt gtaaagggtg agcaactggc tgagcaccag gccgccgaca atggccaggc
     4141 ccagcggctg gcgcatctcc gcgccctccg cctggcccag cagcaacggc agcgcgccga
     4201 gcatggcggc cagggtggtc atcatgatcg ggcggaagcg cagcaggcag gcgcggcgga
     4261 tcgactcctg cggcgacagc ttctggtcgc gctccagctc cagggccagg tcgatcatca
     4321 ggatggcgtt cttcttcacc acgccgatca gcaggaacag cccgagcagc gagaccaggc
     4381 tgaactcgct gccggtcagc aggatcgcca gcagcgcgcc gacaccggcc gagggcagtg
     4441 tggaaaggat ggtcagcgga tggatgtagc tctcgtagag gatgcccagc acgatgtaca
     4501 ccaccagcag ggcgatcagg atcatcaccg gctgcccctg ggcctccttc tcgaactggc
     4561 cgccggtgcc accgagcatg ccctgcacct cggtgggcag gttgacctcg gccacggcct
     4621 ggcggatcgc cgcgttggcc tggtcctggg taacgtcc
//
LOCUS       DATIHC010000522         1620 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10780, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000522 DATIHC010000000
VERSION     DATIHC010000522.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1620
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10780"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..803
                     /gene="dusB"
                     /locus_tag="VLF16_08570"
     CDS             <1..803
                     /gene="dusB"
                     /locus_tag="VLF16_08570"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HSX70976.1"
                     /translation="PEPRSVQIAGGDPEMLAEAARRNVELGAQIIDINMGCPAKKVCN
                     KAAGSALMKDEALVTAILEAVVGAVDVPVTLKIRTGWDRANKNGITVAKIAEQAGIAA
                     LAVHGRTRADLYTGEAEYDTIAAIKQAVSIPVFANGDIDSPHKARAVLDATGADALLI
                     GRAAQGRPWIFREIAHFLATGKELPAPTLYEVERILLEHLAALHAFYGEHMGVRIARK
                     HVGWYLATLPGAKEFRAEFNRLESTDAQGTTVRQFFAEQNNKREGVAA"
     gene            800..1135
                     /gene="fis"
                     /locus_tag="VLF16_08575"
     CDS             800..1135
                     /gene="fis"
                     /locus_tag="VLF16_08575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator Fis"
                     /protein_id="HSX70977.1"
                     /translation="MTRMTEPFFEQSVFDGAVPVSDNANLKQHLATPFEQGQSLRDSV
                     EKALHNYFAHLEGADATDVYNLVLTEVEAPLLETVMNYVKGNQTKASELLGLNRGTLR
                     KKLKQYDLL"
     gene            1211..>1620
                     /gene="purH"
                     /locus_tag="VLF16_08580"
     CDS             1211..>1620
                     /gene="purH"
                     /locus_tag="VLF16_08580"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253541.1"
                     /note="involved in de novo purine biosynthesis; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HSX70978.1"
                     /translation="MTDQTTRLPVRRALISVSDKTGILEFARELVALGVEILSTGGTY
                     KLLKDNGVAAVEVADYTGFPEMMDGRVKTLHPKIHGGILGRRALDGAVMEEHGIKPID
                     LVAVNLYPFAATVAKPGCDLADAIENIDIGGPTMV"
BASE COUNT          319 a          555 c          495 g          251 t
ORIGIN      
        1 atcccgagcc gcgctcggtg cagatcgccg gcggcgatcc cgaaatgctg gccgaggccg
       61 cccgtcgcaa tgtcgaactg ggcgcgcaga tcatcgacat caacatgggt tgcccggcca
      121 agaaggtctg caacaaggcc gccggctcgg cgctgatgaa ggacgaggcg ctggtgacgg
      181 cgatcctcga ggccgtggtc ggcgccgtcg acgtgccggt gaccctgaag atccgcaccg
      241 gctgggatcg cgccaacaag aacggcatca ccgtggcgaa gatcgccgag caggccggca
      301 tcgccgccct cgccgtgcac ggccgcaccc gcgccgacct ctacaccggc gaggccgagt
      361 acgacaccat cgccgccatc aagcaggcgg tttccattcc ggtgttcgcc aacggcgaca
      421 tcgattcgcc gcacaaggcc cgcgccgtgc tcgacgccac tggcgccgat gccctgctga
      481 tcggccgtgc ggcgcagggg cggccgtgga tcttccgcga gatcgcccat ttcctggcta
      541 ccggcaagga gctgccggcg ccgacgctgt acgaagtaga acgcattctg ctggagcacc
      601 tggccgcgct gcacgccttc tacggcgagc acatgggcgt acgcatcgcc cgcaagcacg
      661 tcggctggta tctggcgact ctgcccggtg cgaaggaatt ccgcgccgaa ttcaatcgtc
      721 tggaaagtac ggacgcgcaa ggcaccaccg ttcggcagtt cttcgccgag cagaacaaca
      781 aacgagaagg ggtggccgca tgacgaggat gaccgagccg ttttttgagc aatccgtttt
      841 tgatggggca gtacccgtga gcgacaacgc caacctgaag cagcacctcg ccaccccgtt
      901 cgagcagggc cagtccctgc gcgacagcgt ggaaaaagcg ttgcacaact acttcgcgca
      961 cctcgagggt gccgatgcga ccgatgtcta caacctggta ctgaccgagg tcgaggcgcc
     1021 actgctggaa accgtgatga actacgtcaa gggcaaccag accaaggcct ccgaactgct
     1081 cggcctgaac cgcggcactc tgcgcaagaa gctcaagcag tacgacctgc tctaagcctc
     1141 gaatatctga aaaagggcga ccccagcggt cgcccttttc actgaatctc cagctccgat
     1201 ggactttgca atgaccgacc agaccacccg ccttcccgtt cgccgcgccc tgatcagcgt
     1261 ctccgacaag accggtatcc tcgagttcgc ccgcgagctc gtcgccctcg gtgtcgagat
     1321 cctctccacc ggcggcacct acaagctgct caaggacaac ggcgtcgccg cggtggaagt
     1381 ggccgattac accggcttcc cggaaatgat ggacggtcgc gtcaagaccc tgcacccgaa
     1441 gatccatggc ggcatcctcg gtcgccgcgc gctggacggc gcggtgatgg aagagcatgg
     1501 catcaagccg atcgacctgg tggcggtcaa cctctacccc ttcgccgcca ccgtggccaa
     1561 gccgggctgt gacctggccg acgccatcga gaacatcgac atcggcggcc cgaccatggt
//
LOCUS       DATIHC010000523         1687 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34144, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000523 DATIHC010000000
VERSION     DATIHC010000523.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1687
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34144"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1312
                     /locus_tag="VLF16_08585"
     CDS             <1..1312
                     /locus_tag="VLF16_08585"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018928639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HSX70979.1"
                     /translation="TITLRSSPHGPIVNDALGATPGKTPIAMWWAFLQTENPILDAFY
                     QLNRADTLAKAGAAAAKIHSPGLNVIYANAHGDIGWWAAGKLPQRPAGVNPSFILDGS
                     NGEADKPGYLPFAANPQEENPPRGYIISANYQPDSPTGVAIPGYYNLADRGERLNQRL
                     AQPDVKWDTHNSQALQLDDGTGYGPRLLAPILDELRAAAANDEERALVEQLADWDGGH
                     PLDSVAATLFNQLTFELANQAMRDELGDAFFDSLLQTRVLDVALPRLTAEATSPWWDK
                     RGSEFVESRADTVAAAWQASLAHLRQSFGADSSQWAWGKGHTLTHSHPLGAQKPLDRL
                     LNVGPFAAPGGHEVPNNLSHRVGPAPWSVVYGPSTRRLIDMADASKALGINPVGQSGV
                     PFDNHYADQAEAYIGGRYVPMHFAEDEVQANTRGTLQLQPVEAP"
     gene            complement(1464..>1687)
                     /locus_tag="VLF16_08590"
     CDS             complement(1464..>1687)
                     /locus_tag="VLF16_08590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017938116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="putrescine ABC transporter permease PotI"
                     /protein_id="HSX70980.1"
                     /translation="LPMEVFSAVRLGVKPEINAIASLILLTVSIFTFFAWYFARRAEE
                     RRKRAIQQAMESMAEEVTSSKWKPAQAAA"
BASE COUNT          302 a          624 c          534 g          227 t
ORIGIN      
        1 gaccatcacc ctgcgcagct cgccccacgg ccccatcgtc aacgacgccc tcggtgccac
       61 gccgggcaag acgccgatcg ccatgtggtg ggccttcctg cagacggaga acccgatcct
      121 cgacgccttc taccaactca accgcgccga caccctggcc aaggccggcg ccgccgcggc
      181 gaagatccat tcgcccggcc tcaacgtgat ctacgccaac gcccatggcg acatcggctg
      241 gtgggccgcc ggcaagctgc cgcagcgccc cgcgggggtg aacccgagct tcatcctcga
      301 cggcagcaat ggcgaggcgg acaagccggg ctacctgccg ttcgccgcca acccgcagga
      361 agagaatccg ccgcgcggct acatcatctc cgccaactac cagcccgact cgccgactgg
      421 cgtggcgatt cccggctact acaacctggc cgaccgcggc gaacgcctga accagcgcct
      481 ggcccagccg gacgtgaagt gggacacgca taacagccag gccctgcagc tggacgacgg
      541 caccggctac ggcccgcgcc tgctggcgcc gattctcgac gagctgcgcg ccgcggcggc
      601 gaacgacgag gagcgcgcgc tggtcgagca actcgccgac tgggacggcg gccatccgct
      661 ggactcggtc gccgccacct tgttcaacca gctgaccttc gagctggcca accaagccat
      721 gcgcgacgaa ctgggcgacg ccttcttcga cagcctgctg cagacccgcg tgctcgatgt
      781 ggcgttgccg cgcctgaccg ccgaggctac ctcgccttgg tgggacaagc gcggcagtga
      841 attcgtggag agccgcgccg acacggtcgc ggccgcctgg caggccagcc tcgctcatct
      901 gcgccagagc ttcggtgcgg acagcagcca gtgggcctgg ggcaagggtc ataccctgac
      961 ccacagccat ccgctgggcg cgcagaagcc gctggaccgg ctgctcaacg tcggcccctt
     1021 cgccgcaccg ggcggccacg aagtgccgaa caacctctcg caccgcgtcg gcccggcgcc
     1081 ctggtcggtg gtctacggcc cctcgacccg ccgcctgatc gatatggccg acgccagcaa
     1141 ggcactgggc atcaacccgg tcggccagag cggcgtgccg ttcgataacc actacgccga
     1201 ccaggccgag gcctatatcg gcggccggta cgtgccgatg cacttcgccg aagacgaggt
     1261 gcaggccaac acccgcggca ccttgcaact gcagccggtc gaagcgccct aggtgcgcat
     1321 ggcgcaccct acgagctagg tccacggcag ggccccgacc ttccgtaggg tgcgccgcgc
     1381 gcaccacaaa cacccgggca gtcccgacga cagaaatgaa aaaagccgcc caagggcggc
     1441 ctttttcatg ccgtggaaaa ccctcaggca gcggcctgag ccggtttcca cttggagctt
     1501 gtgacttcct cggccatcga ctccatggcc tgctgaatcg cgcgcttgcg gcgttcctcg
     1561 gcgcggcggg cgaagtacca ggcgaagaag gtgaagatcg acacggtcag caggatcagg
     1621 ctggcgatcg cgttaatctc cggcttcacg cccaggcgca cggcggagaa gacttccatc
     1681 ggcaggg
//
LOCUS       DATIHC010000524         1936 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_41334, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000524 DATIHC010000000
VERSION     DATIHC010000524.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1936
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41334"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..531
                     /locus_tag="VLF16_08595"
     CDS             <1..531
                     /locus_tag="VLF16_08595"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HSX70981.1"
                     /translation="GAVIGGEGFGFANEKAVWQKIAQIGGVVLGDDVEVGANTTIDRG
                     ALADTLIGNGVKLDNQIMIAHNVQIGDHTAMAGCVGISGSTKIGRHCMIAGGVGMVGH
                     IEVCDNVFVTGMTMVTRSITEPGAYSSGTAMQTAADWKKSAARIRQLDDMAKRLRELE
                     KRLAAVTPGDQASSDA"
     gene            578..1018
                     /gene="fabZ"
                     /locus_tag="VLF16_08600"
     CDS             578..1018
                     /gene="fabZ"
                     /locus_tag="VLF16_08600"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003244215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019171 -
                     (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HSX70982.1"
                     /translation="MMDINEIREYLPHRYPFLLVDRVAELDVEGKTIRAYKNVSINEP
                     FFNGHFPEHPIMPGVLIIEAMAQAAGILGFKMLDVKPSDGTLYYFVGSDKLRFRQPVM
                     PGDQLVLEAKFLSAKRSIWKFECRASVDGKEVCSAEIICAERKL"
     gene            1015..1791
                     /gene="lpxA"
                     /locus_tag="VLF16_08605"
     CDS             1015..1791
                     /gene="lpxA"
                     /locus_tag="VLF16_08605"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HSX70983.1"
                     /translation="MSLIDPRAIIDPSAKLAADVQVGPWSIVGPDVEIGEGSVIGPHV
                     VLKGPTVIGKHNKIYQFSSVGEDTPDLKYKGEPTRLVIGDHNVIREGVTIHRGTVQDR
                     GETTLGDHNLLMAYVHVGHDSVIGNHCILVNNTALAGHVWVDDWAILSGFTLVHQFCR
                     IGAHSFSGMGTAIGKDVPAYVTVFGNPAEARSMNFEGMRRRGFSAEAIAALRRAYKVV
                     YRQGLTVEQALAELAESAAQFPEVAVFRDSVQASTRGITR"
     gene            1794..>1936
                     /locus_tag="VLF16_08610"
     CDS             1794..>1936
                     /locus_tag="VLF16_08610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HSX70984.1"
                     /translation="MSRTLRVALVAGEASGDILGAGLMQALKTRYPQIEFIGVGGPRM
                     EAEG"
BASE COUNT          363 a          653 c          602 g          318 t
ORIGIN      
        1 ggcgcggtga tcggcggcga gggcttcggc ttcgccaacg agaaggccgt ctggcagaag
       61 atcgcgcaga tcggcggcgt ggtgctgggc gacgacgtgg aagtcggcgc caataccacc
      121 atcgaccgcg gcgcgctggc cgacaccctg atcggcaacg gcgtgaagct ggataaccag
      181 atcatgatcg cgcacaacgt acagatcggc gatcacaccg ccatggccgg ctgcgtcggt
      241 atttccggca gcaccaagat cggccggcac tgcatgatcg ccggcggtgt cggcatggtc
      301 ggacacatcg aggtgtgcga caacgtgttc gtcaccggca tgaccatggt cacccgctcg
      361 atcaccgagc cgggcgcgta ctcttccggc accgccatgc aaacggcggc ggactggaag
      421 aagagtgccg cccgcatacg tcaactggac gacatggcga agcgcctgcg cgagctggaa
      481 aagcgcctcg ccgccgtgac cccgggcgat caagcctcat cagatgcctg atcgtgcccg
      541 aggcacgccc ccatattcag taaaggcttt ccgcaaaatg atggacatca acgagattcg
      601 cgaatatctg ccgcaccgct atcccttcct gctggtggat cgcgtcgccg agctggacgt
      661 ggaaggcaag accattcgcg cctacaagaa tgtcagcatc aacgagcctt tcttcaacgg
      721 ccacttcccc gagcatccga tcatgccggg cgtgctgatc atcgaggcca tggcccaggc
      781 ggccggtatc ctcggcttca agatgctcga cgtgaagccg tccgacggca ccctctacta
      841 cttcgtgggc tccgacaagc tacgcttccg tcaaccggtc atgccgggcg accagctggt
      901 gctcgaggcc aagttcctca gcgccaagcg cagcatctgg aagttcgagt gccgcgccag
      961 cgtcgatggc aaggaagtct gctcggccga aatcatctgt gcggaacgca agctatgagt
     1021 ttgatcgacc ctcgcgccat catcgatccg tcggccaagc tggccgcgga cgtccaggtc
     1081 ggcccgtggt cgatcgtcgg acccgatgtg gaaattggcg agggtagcgt gatcgggccg
     1141 catgtggtgc tcaagggccc gaccgtgatc ggcaagcaca acaagatcta ccagttctcc
     1201 tcggtgggtg aagacacgcc cgacctcaag tacaagggcg agccgacccg cctggtcatc
     1261 ggcgatcaca acgtgatccg cgagggcgta accatccatc gcggcaccgt gcaggaccgc
     1321 ggcgagacca ccctcggcga ccacaacctg ctgatggcct atgtacatgt cggccacgac
     1381 agcgtgatcg gcaaccactg catcctggtc aacaacaccg ccctggccgg tcatgtgtgg
     1441 gtcgacgact gggcgatcct ctccggcttc accctggtcc accagttctg ccgcatcggc
     1501 gcccacagct tctccggcat gggcaccgcc atcggcaagg acgtgccggc ctacgtcacc
     1561 gtcttcggta acccggccga ggcgcgcagc atgaacttcg aaggcatgcg ccgccgcggc
     1621 ttcagtgccg aggccatcgc cgccctgcgc cgcgcctaca aggtggtcta ccgccagggt
     1681 ctgaccgtcg aacaggcgct ggccgaactg gccgagtccg ccgcccagtt cccggaggtg
     1741 gcggtgttcc gcgactccgt ccaggcctcg acccgcggca tcacccgctg accatgagcc
     1801 gtacccttcg cgttgcgctg gtggccggcg aggcctccgg cgatatcctc ggtgccggcc
     1861 tgatgcaggc gctcaagact cgctatccac agatcgaatt catcggcgtc ggcggcccgc
     1921 gcatggaggc cgaggg
//
LOCUS       DATIHC010000525         1890 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_6268, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000525 DATIHC010000000
VERSION     DATIHC010000525.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1890
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6268"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..701)
                     /gene="cydB"
                     /locus_tag="VLF16_08615"
     CDS             complement(<1..701)
                     /gene="cydB"
                     /locus_tag="VLF16_08615"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002555240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016682 - oxidoreductase activity, acting
                     on diphenols and related substances as donors, oxygen as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HSX70985.1"
                     /translation="MTLDLPLIWAGVIAFGIFMYVVMDGFDLGIGILYPFFRDKDERD
                     AMMNTVAPIWDGNETWLVLGGAGLFAAFPLAYSVVLTALYLPLVIMLIALIFRGVAFE
                     FRFKAKRTRYVWDAAFIGGSIVATFAQGVVLGAFIEGLKVENRQFVGGAFDWLAPFPL
                     FCGAGLVAGYAMLGCAWLLMKTEGKLRHKMYKLMLPLTCVLLLFIAAVSIWTPLAHES
                     IAERWFTLPNLFYFIP"
     gene            complement(698..>1890)
                     /locus_tag="VLF16_08620"
     CDS             complement(698..>1890)
                     /locus_tag="VLF16_08620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010206693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0070069 - cytochrome complex [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019646 - aerobic electron transport chain
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HSX70986.1"
                     /translation="AVLSEKAGNILGPLLSYEVLTAFFLEAGFLGIMLFGLNKVGRGL
                     HFFATLMVAIGTLISTFWILSSNSWMHTPQGFTLVDGVFTPDSWWDIVFNPSFPYRLA
                     HMAVAAFLSTAFVVGGTAAWHLLKGKRDPATRMMFSMALWMALIVAPIQALIGDFHGL
                     NTLKYQPAKVAAMEGHWETEKGVPLLLFGIPDMQEETTKYAIGVPRLASLILTHDLDG
                     EIKGLKEWAPEDRPNALIVFWSFRVMVGLGLLMILCGVLGLWLRRGDKVYEAKGFQRL
                     MLLMGPSGIIALLAGWVTTEVGRQPWVIYGLLRTSDAVSNHSATQMGVSLTIFVVVYF
                     AVFGVGITYLLRMMRKGPVLGLLTAQIAEQGGPGHSRTPARPLSAAAESVDGEVDVEQ
                     EKRP"
BASE COUNT          357 a          616 c          639 g          278 t
ORIGIN      
        1 gggatgaagt agaacaggtt gggcagggtg aaccagcgct cggcgatgct ctcgtgggcc
       61 agcggcgtcc agatgctcac ggcggcgatg aacagcagca gcacgcaggt cagcggcagc
      121 atcagcttgt acatcttgtg gcgcagcttg ccctcggtct tcatcagcag ccaggcgcag
      181 ccgagcatgg cgtagccggc caccaggccg gcgccgcaaa acagcgggaa gggcgccagc
      241 cagtcgaagg cgccgccgac gaactggcgg ttctccacct tcaggccctc gatgaaggcg
      301 cccagcacca cgccctgggc gaaggtcgcg acgatcgagc cgccgatgaa cgcggcgtcc
      361 cacacatagc gggtgcgctt ggccttgaag cggaactcga aggccacgcc gcggaagatc
      421 agcgcgatca gcatgatcac cagcggcagg tacagcgccg tgagcaccac cgaataggcc
      481 agcgggaagg cggcgaacag cccggcgccg cccagcacca gccaggtctc gttgccgtcc
      541 cagatcggcg ccacggtgtt catcatggcg tcgcgctcgt ccttgtctcg gaagaacggg
      601 tagaggatgc cgatgcccag atcgaagccg tccatcacca cgtacatgaa gatgccgaag
      661 gcgatcaccc cggcccagat cagcggaagg tcgagggtca cgggcgcttc tcctgttcga
      721 cgtcgacttc gccgtccacg ctctcggcgg cggccgacag cggccgcgcc ggcgtgcggc
      781 tatggcccgg cccgccctgt tcggcgatct gggcggtgag caggcccagc accgggccct
      841 tgcgcatcat gcgcagcagg taggtgatgc cgacgccgaa tacggcgaag tacaccacca
      901 cgaagatcgt cagcgacacg cccatctgcg tggcgctgtg gttggagact gcgtccgagg
      961 tgcgcagcag gccgtagatc acccagggct ggcggcccac ttcggtggtc acccagccgg
     1021 ccagcagggc gatgatcccg ctcggcccca tcagcagcat caggcgctgg aagcccttgg
     1081 cttcgtagac cttgtcgcca cggcgcagcc acaggccgag cacgccgcag aggatcatca
     1141 gcaggcccag gccgaccatc acgcggaagc tccagaacac gatcagcgcg ttgggccgat
     1201 cttccggcgc ccattccttg aggcccttga tctcgccgtc gaggtcatgg gtgaggatca
     1261 ggctggccag acgtggcacg ccgatagcgt acttggtggt ctcttcctgc atgtcgggga
     1321 tgccgaacag cagcagcggc acgcctttct cggtttccca gtggccctcc attgccgcca
     1381 ccttggccgg ctggtacttg agggtgttga ggccgtggaa gtcgccgatc agcgcctgga
     1441 tcggcgcgac gatcagcgcc atccacaggg ccatggagaa catcatgcgg gtggcagggt
     1501 cgcgcttgcc cttgagcagg tgccaggccg cggtgccgcc gaccacgaag gcggtgctga
     1561 ggaaggccgc caccgccatg tgcgccaggc gataggggaa ggatgggttg aacacgatgt
     1621 cccaccacga atccggggtg aacacgccgt ccaccagggt gaagccctgc ggggtgtgca
     1681 tccagctgtt cgaagagagg atccagaagg tcgagatcag cgtgccgatg gccaccatca
     1741 gggtggcgaa gaagtgcagg ccgcggccaa ccttgttcag gccgaacagc atgatcccca
     1801 ggaagccggc ttcgaggaag aacgcggtga gcacctcgta gctcagcagc gggccgagga
     1861 tgttgccggc cttctcgctc agcacggccc
//
LOCUS       DATIHC010000526         1818 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_41335, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000526 DATIHC010000000
VERSION     DATIHC010000526.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1818)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1818)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1818
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41335"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(89..1294)
                     /locus_tag="VLF16_08625"
     CDS             complement(89..1294)
                     /locus_tag="VLF16_08625"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HSX70987.1"
                     /translation="MTEAYIFDAVRTPRGKGKKDGALHSVKPVNLVAGLLRALQERNS
                     LDTRQVDDIVLGCVTPVGDQGADIAKTAPMVADWDVSVSGVQLNRFCASGLEAVNMGA
                     MKVRSGFEDLVVVGGVESMSRVPMGSDGGAWVMDPETNIHTSFVPQGIGADLIATLEG
                     FSRSDVDAFALRSQQKAARASADGSFNKSLIPVTDQNGIVILDHDEFIRGDSTLEGLG
                     KLKPSFEMMGQMGFDSTALRVYSHVERIEHVHTPGNSSGIVDGAALMLIGTPAKGKEL
                     GLKPRARIVATAVTSTDPTIMLTGPAPATRKALAKAGLSVEDIDLFEVNEAFASVVMK
                     FMKDMGVSEDKVNVNGGSIAMGHPLGATGCAILGTLLDELEKRELRYGLATLCVGGGM
                     GIATIIERI"
BASE COUNT          305 a          615 c          560 g          338 t
ORIGIN      
        1 gccgcgtagg gtggaaaacc cgcaaagcgg ttttccaccg gggcgacttc tggtggatga
       61 gcttcgcgtc atccacccta taaatcggtc agatgcgctc gatgatggtc gcgatgccca
      121 tgccgccgcc gacacacagc gtggccaggc cgtagcgcag ctcacgcttc tccagctcgt
      181 cgagcagggt gccgaggatg gcgcaaccgg tggcgcccaa cgggtggccc atggcgatgg
      241 agccgccgtt gacgttgacc ttgtcctcgc tcacgcccat gtccttcatg aacttcatca
      301 ccaccgaggc gaaggcctcg ttgacctcga acaggtcgat gtcttccacc gagaggccag
      361 ccttggccag tgccttgcgg gtggccggcg ccgggcctgt gagcatgatg gttgggtcgg
      421 tactggtcac ggcggtggcg acgatgcgcg cacgcggctt caaacccagt tccttgccct
      481 tggccggggt gccgatcagc atcagcgcgg cgccatcgac tatccctgag ctattgcccg
      541 gagtgtgcac gtgctcgatg cgctcgacat ggctgtacac gcgcagtgcg gtggagtcga
      601 agcccatctg gcccatcatc tcgaagctcg gcttgagctt gcccaggccc tcgagcgtgc
      661 tgtcaccgcg aatgaattcg tcgtgatcga ggatgacgat gccgttctgg tcggtcaccg
      721 gaatcagcga tttgttgaac gagccgtcag cgctggcgcg cgcggccttc tgctgcgagc
      781 gcagggcgaa ggcgtccacg tcgctgcggc tgaagccttc cagggtggcg atcaagtcgg
      841 cgccgatacc ttgcggcacg aagctggtgt ggatgttggt ttccgggtcc atcacccagg
      901 cgcctccgtc ggagcccatc ggcacgcgcg acatggactc cactccgccg accaccacca
      961 gatcctcgaa gccggagcgc accttcatcg cgcccatgtt caccgcctcc aggcccgagg
     1021 cgcagaaacg gttgagctgc acgccggaga cgctgacgtc ccagtccgcc accatcggcg
     1081 cggttttggc gatatcggcg ccctggtcgc ccaccggagt cacgcagccg agcacgatat
     1141 cgtcgacctg gcgggtatcc aggctgttgc gctcctgcag cgcacgcagc aggccggcca
     1201 ccagattgac cggcttgacg ctgtgcaacg cgccgtcctt cttgcccttg ccgcgcggcg
     1261 tgcgcacggc gtcgaaaata tatgcttcgg tcatgacgtc ctcggtacat ggcagcggcg
     1321 gatgccgggt cgccttacct taattccccg tcccgcggac tcaatgaccg atgcgctcag
     1381 ccccgttgac cattgggctc agacgagcgg tcgtcgtcgc cagcgccacg cttcgccggg
     1441 ctgcgacccc tctggcctgg ggtatgccgg ctgatgaccc gaccgaagcc aataaccaca
     1501 gtgctcaagc cattcgccgc tagaaaccaa gtcgtctaag gcggctgtga ccggccccct
     1561 agccttaaac gtgcaaggtg ccgtcgccgg gttttgccgg gacggctttt ttatccgcgc
     1621 cacggtgttc gccccgtccg cagcgtgcta cgggcacagg ccggaacgcc tacaagaaca
     1681 aaggcagtcg catcatgttc aaacgagaca agtaccggca ggcgagcctg atcgtcctcg
     1741 ccaccaccgt catcctgatc ctgcccaacg tcccccgtct ggtcagctga tcgtccttat
     1801 actcgccgtg gcccgatg
//
LOCUS       DATIHC010000527         2660 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21683, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000527 DATIHC010000000
VERSION     DATIHC010000527.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2660)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2660)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2660
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21683"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            60..1214
                     /gene="potA"
                     /locus_tag="VLF16_08630"
     CDS             60..1214
                     /gene="potA"
                     /locus_tag="VLF16_08630"
                     /EC_number="7.6.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015417 - ABC-type polyamine transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015846 - polyamine transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter ATP-binding protein"
                     /protein_id="HSX70988.1"
                     /translation="MAKKPQLAIDTRPWRDPAAKPFVRIRNVTKKFGDVFAVSDVSLD
                     IYKSELFCLLGGSGSGKSTLLRMLAGFEQPTSGTIEIDGQDMTGVAPYNRPVNMMFQS
                     YALFPHMTVAQNIAFGLKQDRLPQAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQR
                     VALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMT
                     MAQRIAIMHLGWIAQTGSPVDIYETPASRLVCEFIGNVNLFDGEITTDESDHAIISCP
                     QLDRPIYIGHGVSTRAESKSVSYALRPEKLLMASALPADHEHPDYNWCNGTVHDIAYL
                     GGHSVYYVKLASGQIVQCFIANAERRGKRPTWDDAVVVYWEDDSGVVLQS"
     gene            1238..2119
                     /locus_tag="VLF16_08635"
     CDS             1238..2119
                     /locus_tag="VLF16_08635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013789495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HSX70989.1"
                     /translation="MPNGRQAVIGVPFVWLFLFFLLPFFIVLKISFAEADVAIPPYTD
                     IYSWADNQLQIVLNLGNYIFLTEDELYLSAYLGSLKIAFISTLLCLLLGYPMAYAIAR
                     SSKEAQTVFLLLIMMPTWTAILIRVYAWMGILSNNGLLNGFLQMLGVIDEPLQILNTN
                     LAVYIGIVYSYLPFMVLPLYANLVKHDMSLLEAASDLGSSNFNNFWKITVPLSKNGII
                     AGSMLVFIPVVGEFVIPELLGGPETLMIGKVLWQEFFNNRDWPVASALAVIMLAILMG
                     PIIWFNRNQAKEMEGRA"
     gene            2116..>2660
                     /locus_tag="VLF16_08640"
     CDS             2116..>2660
                     /locus_tag="VLF16_08640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010955705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter permease PotI"
                     /protein_id="HSX70990.1"
                     /translation="MRRLSFSTVMLWVGLLFIYLPMVIMVVYSFNASKLVTVWGGWSV
                     KWYVGLLDNTQLMGSVLRSLEIALYTAVAAVALGTLAAFVLTRVTRFKGRTLFGGLVT
                     APLVMPEVITGLSLLLLFVAMAQLIGWPAERGVMTIWIAHTTFCSAYVAVVVSARLRE
                     LDLSIEEAAMDLGAKPWKVFFL"
BASE COUNT          471 a          893 c          798 g          498 t
ORIGIN      
        1 tccttcgaca ggctcaggat gaggtctact ggtagggccg cggtcgccgc gagaacttga
       61 tggcaaaaaa accccagctc gcaatcgaca cccgcccctg gcgcgatccc gcggccaagc
      121 cgttcgtgcg cattcgcaac gtcaccaaga aattcggtga cgtttttgcc gtcagcgacg
      181 tgtcgctcga catctacaag tccgagctgt tctgcctgct cggcggctcg ggctccggca
      241 agtcgacgct gctgcgcatg ctggccggct tcgagcagcc cacctccggc acgatcgaaa
      301 tcgacggcca ggacatgacg ggcgtggcgc cctataaccg ccccgtcaac atgatgttcc
      361 agtcctacgc gctgttcccg cacatgaccg tggcgcagaa catcgccttc ggcctcaagc
      421 aggaccggct gccgcaggcc gagatcgacg agcgcgtggc cgagatgctc aagctggtgc
      481 acatgaccca gtacgccaag cgcaagccgc accagctctc cggcggccag cgccagcgcg
      541 tggccctggc ccgttccctg gccaagcgtc ccaagctgct gctgctcgac gagcccatgg
      601 gtgctctgga caagaagctg cgctcgcaga tgcagcttga gcttgtcgag atcatcgagc
      661 gcgtgggcgt gacctgcgtg atggtgaccc acgaccagga agaggccatg accatggccc
      721 agcgcatcgc catcatgcac ctcggctgga tcgcccagac cggcagcccg gtggacatct
      781 acgagacccc ggccagtcgc ctggtctgcg agttcatcgg caacgtcaac ctgttcgacg
      841 gcgagatcac caccgacgaa agcgaccacg ccatcatcag ctgcccgcag ctggaccggc
      901 cgatctacat cggccatggc gtcagtaccc gcgccgagag caaatcggtg agctatgccc
      961 tgcgcccgga gaagctgctg atggccagcg ctctgccggc cgaccacgag cacccggact
     1021 acaactggtg caacggcacc gtgcatgaca tcgcctacct cggcggccac tcggtgtact
     1081 acgtcaagct ggcctcgggg cagatcgtgc agtgcttcat cgccaacgcc gaacgccgcg
     1141 gcaagcgccc gacctgggac gacgccgtgg tggtctactg ggaagacgac agcggcgtgg
     1201 tactgcaatc atgaagcccg gcaaactgaa acgatacctg cccaacggac ggcaggccgt
     1261 gatcggcgtg cccttcgtct ggctgttcct gttcttcctg ttgccgttct tcatcgtcct
     1321 gaagatcagc ttcgccgaag ccgatgtggc catcccgccc tacaccgaca tctacagctg
     1381 ggccgacaac cagctgcaga tcgtgctgaa cctgggcaac tacatcttcc tcaccgagga
     1441 cgagctgtac ctctcggcct acctcggctc gctgaagatc gccttcatca gcaccctgct
     1501 ctgcctgctg ctcggctacc cgatggccta cgccatcgcc cgctccagca aggaagcgca
     1561 gacggtgttc ctgctgctga tcatgatgcc gacctggacc gcgatcctga tccgcgtcta
     1621 cgcctggatg ggcatcctca gcaacaacgg cctgctcaat ggcttcctgc agatgctcgg
     1681 ggtcatcgat gagccgctgc agatcctcaa caccaacctc gcggtgtaca tcggcatcgt
     1741 ctactcgtac ctgccgttca tggtgctgcc gctctacgcc aacctggtca agcacgacat
     1801 gagtctgctg gaagcggcgt ctgacctggg ttcgagcaac ttcaacaact tctggaagat
     1861 caccgtgccg ctgtccaaga acggcatcat cgccggcagc atgctggtgt tcatcccggt
     1921 ggtcggcgag ttcgtcatcc ccgagctgct cggcggaccg gagaccctga tgatcggcaa
     1981 ggtgctgtgg caggagttct tcaacaaccg cgactggccg gtggcgtccg ccctggcggt
     2041 gatcatgctg gcgatcctca tgggcccgat catctggttc aaccgtaacc aagcgaaaga
     2101 gatggagggc cgcgcatgag acgcctgagc ttctccacag tgatgctgtg ggtgggtctg
     2161 ctgttcatct acctgcccat ggtcatcatg gtcgtgtact ccttcaacgc ctccaagctg
     2221 gtcaccgtgt ggggtggctg gtcggtcaag tggtacgtcg gcctgctcga caacacccag
     2281 ctgatgggtt cggtgctgcg ctcgctggag atcgccctgt acaccgccgt cgcggcggtg
     2341 gcactgggca ccctggccgc attcgtgctg acccgcgtga cccgcttcaa gggccgcacc
     2401 ctgttcggtg gcctggtcac ggcaccgttg gtgatgccgg aagtgatcac cggtctgtcg
     2461 ctgctgctgc tgttcgtggc catggcccag ctgatcggct ggccggccga gcgtggcgtc
     2521 atgaccatct ggatcgccca cactaccttc tgctcggcct acgtggcggt ggtggtgtcg
     2581 gcacgcctgc gcgagctgga cctgtccatc gaggaagcgg ccatggacct gggcgccaag
     2641 ccgtggaagg tgttcttcct
//
LOCUS       DATIHC010000528         2189 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10802, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000528 DATIHC010000000
VERSION     DATIHC010000528.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2189
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10802"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1667)
                     /locus_tag="VLF16_08645"
     CDS             complement(<1..1667)
                     /locus_tag="VLF16_08645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010563993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009306 - protein secretion [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA];
                     GO_process: GO:0071978 - bacterial-type
                     flagellum-dependent swarming motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HSX70991.1"
                     /translation="MDRGQIIGDVRSNLSGLRHGNLGIPLLLLVMLAMVMLPIPPFLL
                     DLLFTFSIALSIVVLLVAIYALRPLDFAVFPTVLLAATLLRLGLNVASTRVVLLHGQE
                     GHDAAGKVIQAFGEVVIGGNYVVGAVVFAILMIINFVVVTKGAGRISEVSARFTLDAM
                     PGKQMAIDADLNAGLIDQAEAKKRRTEVAQEADFYGSMDGASKFVRGDAVAGLLILFI
                     NLIGGIAIGVVQHDLAFADAGRIYTLLTIGDGLVAQIPSLLLSTAAAVMVTRVSSAED
                     MGQQINRQMFASPKALAVSAAIMIAMGLVPGMPHVPFIGLGLIAAGAAYWIVHKQRQS
                     KVEAEQEDKRQQELLPAQRAQEVKELGWDDVTPVDMVGLEVGYRLIPLVDRNQGGQLL
                     ARIKGVRKKLSQEMGFLMPSVHIRDNLDLMPNAYRLTLMGVSVAEAEVYPERELAINP
                     GQVFGSLNGIAAKDPAFGLEAVWIDPTQRDQAQSLGYTVVDASTVVATHLNQVLHKHA
                     HELLGHEEVQQLLQLLAKSSPKLAEELVPGMISLSTLLKVLQTLLAE"
     gene            1842..>2189
                     /locus_tag="VLF16_08650"
     CDS             1842..>2189
                     /locus_tag="VLF16_08650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013791043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006801 - superoxide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase family protein"
                     /protein_id="HSX70992.1"
                     /translation="MRQWTLAALLVAAASAQAAPLDITLHAVDSSGVGKAVGTVKVEQ
                     SRYGLVFTPALSGLEPGIHGFHVHANPSCEPGMKDGKATAADKAGGHWDPEGTGTHGA
                     PWQDDDGQGDAEGE"
BASE COUNT          401 a          726 c          724 g          338 t
ORIGIN      
        1 tgttccgcca gcagggtctg cagcaccttg agcagggtcg acagggaaat catgcccggc
       61 accagctcct cggccagctt cggcgagctc ttggccagca gttgcagcag ttgctggact
      121 tcctcgtggc cgagcagctc gtgggcgtgc ttgtgcagga cctgattgag gtgggtggcg
      181 accacggtgc tggcgtccac caccgtgtag ccgagggact gggcctggtc gcgctgggtc
      241 gggtcgatcc acaccgcctc cagcccgaac gccggatcct tggcggcgat gccgttcagg
      301 ctgccgaaga cctggccggg gttgatcgcc agctcgcgct ccgggtaaac ctccgcctcc
      361 gccacgctca ctcccatcag ggtcaggcga taggcgttgg gcatcaggtc gaggttgtcg
      421 cggatatgca ccgagggcat caggaagccc atttcctggg acagcttctt gcgtacaccc
      481 ttgatccgcg ccagcagctg gccaccctgg ttgcggtcga ccagcgggat caggcgatag
      541 cccacctcca ggccgaccat gtccaccggg gtcacgtcgt cccaacccag ctccttgacc
      601 tcctgggcgc gctgggccgg cagcagttcc tgctggcgct tgtcctcctg ctcggcctcc
      661 accttggact ggcgctgctt gtgcacgatc cagtaggcgg cgcccgccgc gatcaggcca
      721 aggccgatga aaggcacatg cggcatgccg ggcaccaggc ccatggcgat catgatcgcc
      781 gccgagacgg ccagggcctt gggcgaggcg aacatctgcc ggttgatctg ctggcccatg
      841 tcctcggcgg aagagacgcg ggtgaccatc accgcggccg cggtggacag cagcagcgac
      901 gggatctgcg ccaccaggcc gtcaccgatg gtcagcaggg tgtagatgcg gccggcgtcg
      961 gcaaaggcca ggtcgtgctg taccacgccg atggcgatac cgccgatcag gttgatgaag
     1021 aggatcagca ggccggcgac ggcgtcgccg cggacaaatt tcgaggcacc gtccatcgag
     1081 ccatagaagt cggcctcctg ggccacctca gtccggcgct tcttggcctc ggcctggtcg
     1141 atcaggccgg cgttgaggtc ggcatcgatg gccatctgct tgccgggcat ggcgtccagg
     1201 gtgaagcgcg cgcttacctc ggagatacgt cctgcaccct tggtgaccac cacgaagttg
     1261 atgatcatca agatggcgaa caccacggcg ccgaccacgt agttgccgcc gatcaccact
     1321 tcaccgaagg cctggatcac cttgcccgcg gcgtcgtggc cctcctggcc gtgcagcagg
     1381 accacccggg tcgaggcgac gttcaggccg aggcgcagca gggtcgcagc cagcagcacg
     1441 gtggggaaca cggcgaagtc cagcggcctc agcgcataga tggcgaccag caggacgacg
     1501 atggacaggg cgatgctgaa ggtgaagagc aggtcgagca ggaacggcgg gatcggcagc
     1561 atgaccatgg ccagcatgac cagcagcagc agcgggatgc cgaggttgcc gtgccgcaat
     1621 cccgacagat tgctgcgcac atcaccgatg atttgcccac gatccaaagc cacgtgctac
     1681 ctcgcctatt caatcttttg acgcggatgg cgccatgact gggctagagc aagaacccgg
     1741 ccatgttggg ccggccaggc aaaacaacgc gttacatcag gtcggaaacc caccgcgggt
     1801 tagagagtca gaactagcca cccccaacag gagaaatcac catgcgccaa tggaccctcg
     1861 ccgccctcct cgtcgctgcc gctagcgcgc aggccgcgcc gctcgacatc accctgcatg
     1921 ccgtcgacag ctccggcgtc ggcaaggcgg tcggcaccgt caaggtcgaa cagagccgct
     1981 acgggctggt gttcaccccc gccctgtccg gcctggagcc gggcatccac ggctttcacg
     2041 tgcatgccaa cccgagctgc gagccgggca tgaaggatgg caaggcgacc gccgcggaca
     2101 aggccggcgg tcactgggac ccggaaggca ccggcaccca cggcgcgccc tggcaggacg
     2161 acgatggaca gggcgatgct gaaggtgaa
//
LOCUS       DATIHC010000529         4645 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13029, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000529 DATIHC010000000
VERSION     DATIHC010000529.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4645
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13029"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..882)
                     /gene="clpX"
                     /locus_tag="VLF16_08655"
     CDS             complement(<1..882)
                     /gene="clpX"
                     /locus_tag="VLF16_08655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003239947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HSX70993.1"
                     /translation="MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDL
                     CNDIIREEVQEAQAESSAHKLPAPKEISGILDQYVIGQERAKKVLSVAVYNHYKRLNQ
                     RDKKDDVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVE
                     NIIQKLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKILEG
                     TTASVPPQGGRKHPQQEFLQVDTRNILFICGGAFAGLEKVIQARSTKGGIGFNAEVRK
                     LIAGPSVFICDECVDLCN"
     gene            complement(991..1632)
                     /gene="clpP"
                     /locus_tag="VLF16_08660"
     CDS             complement(991..1632)
                     /gene="clpP"
                     /locus_tag="VLF16_08660"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009368 - endopeptidase Clp complex
                     [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HSX70994.1"
                     /translation="MSHNSFMNTMPDIQAAGGLVPMVIEQSARGERAYDIYSRLLKER
                     VIFMVGQVEDYMANLVVAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKP
                     DVSTICIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAREIL
                     TIRERLNKILAEHCKQPIEVIARDTDRDNFMSGDEAVKYGLIDQVLSKRQMAV"
     gene            complement(1725..3035)
                     /gene="tig"
                     /locus_tag="VLF16_08665"
     CDS             complement(1725..3035)
                     /gene="tig"
                     /locus_tag="VLF16_08665"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005854 - nascent polypeptide-associated
                     complex [Evidence IEA];
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0051083 - 'de novo' cotranslational protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HSX70995.1"
                     /translation="MQVSVESTSALERRMTIGVPAERIETEVTKRLQQTARRAKVPGF
                     RPGKVPMNVIRQRYEDSARQEALGDLIQATFYEAIVEQKLNPAGAPSVEPKAFEKGKD
                     LEYVATFEVFPEIQLAGFDGIEIERLQADVQDSDVDNMLEILRKQNTRFEAAERAAEN
                     GDQLNIDFVGKIDGEAFAGGSAKGTPLVLGSGRMIPGFEDALVGVKAGEERVINPTFP
                     ADYQNLDLAGKTAEFTVTVNSVSAPQLPELNDDFFALFGIKEGGLEGFRTEVRKNMER
                     ELRQAIKSKVKNQVMEGLLAANPAEVPKALIGNEVNRLRVQAVQQFGGNIKPDQLPAE
                     LFEEQAKRRVVLGLIVAEVVKQNELKADEARVRELIEEMASAYQEPQQVVAWYYKNDQ
                     QLNEVRSVVLEEQVVDTVLQKAKVTDKAVSYEEAVKPAEAPQAA"
     gene            complement(3185..3269)
                     /locus_tag="VLF16_08670"
     tRNA            complement(3185..3269)
                     /locus_tag="VLF16_08670"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3233..3235),aa:Leu,seq:tag)
     gene            complement(3325..3400)
                     /locus_tag="VLF16_08675"
     tRNA            complement(3325..3400)
                     /locus_tag="VLF16_08675"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3365..3367),aa:His,seq:gtg)
     gene            complement(3432..3508)
                     /locus_tag="VLF16_08680"
     tRNA            complement(3432..3508)
                     /locus_tag="VLF16_08680"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3472..3474),aa:Arg,seq:tct)
     gene            3769..4623
                     /gene="folD"
                     /locus_tag="VLF16_08685"
     CDS             3769..4623
                     /gene="folD"
                     /locus_tag="VLF16_08685"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011062276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004488 - methylenetetrahydrofolate
                     dehydrogenase (NADP+) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HSX70996.1"
                     /translation="MTAKLIDGKSIAANLRQEIAKRVAERRQQGLRAPGLAVILVGSD
                     PASQVYVSHKRKDCEEVGFVSVAHDLPATTTQGELLGLIDQLNRDNAIDGILVQLPLP
                     AHLDASQLLERINPDKDVDGFHPFNVGRLSQRMPLLRSCTPKGIMTLLESTGVDLHGQ
                     HAVVVGASNIVGRPMALELLLAGCTVTVTHRFTKDLAGHVAQADIVVAAAGKTGLVKG
                     EWIKQGAIVIDVGINRQADGKLVGDVEYDVAAERAGWITPVPGGVGPMTRACLLENTL
                     YAAEHLHA"
BASE COUNT          871 a         1445 c         1409 g          920 t
ORIGIN      
        1 attgcacagg tcgacgcact cgtcgcagat aaagaccgag gggccggcga tcagcttgcg
       61 cacttcggca ttgaagccga tgccgccctt ggtggagcgg gcctggatga ctttctccag
      121 accggcaaag gcaccaccgc agatgaacag gatgttgcgg gtatcgacct gcaggaactc
      181 ctgctgcgga tgcttgcggc cgccctgcgg cggaaccgag gcggtggtgc cctcgaggat
      241 cttcagcagc gcctgctgca cgccctcacc cgaaacatcg cgggtgatcg aagggttgtc
      301 cgacttgcgc gagatcttgt cgatctcgtc gatgtagacg atgcccatct gggccttctc
      361 gacatcgtaa tcgcacttct gcagcagctt ctggatgatg ttctcgacat cctcacccac
      421 gtaaccggcc tcggtcagcg tggtggcgtc ggcaatggtg aagggaacat tgagcaggcg
      481 ggccagggtc tcggccagca gagtcttgcc cgagccggtc gggccgatca gcaggatgtt
      541 gctcttgccc agttcgacgt cgtctttctt gtcgcgctgg ttcaaacgct tgtagtggtt
      601 gtacacggca acggagagca ccttcttggc gcgctcctga ccgatcacat actgatccag
      661 gataccgctg atttcctttg gcgcgggcaa cttgtgagcg ctgctctcgg cctgggcttc
      721 ctgcacctcc tcgcggatga tgtcattgca caggtcgacg cactcgtcgc agataaagac
      781 cgaggggccg gcgatcagct tgcgcacttc gtgctggctt ttgccgcaga aggagcagta
      841 gagcagcttg ccgttgtcct cgccgttgcg ggtgtcagtc attcgatcga tccaatacgg
      901 taggcatgta acacaagatg aaggcaattg cgggcatttt caaccctgcg ggacggccgg
      961 acctgcccgg ccgctacgct ggcgcaccga tcagacggcc atctgacgct tgctgagaac
     1021 ctgatcgatg aggccgtatt tgaccgcttc gtcgccgctc atgaagttgt cgcggtcggt
     1081 gtcccgggcg atgacttcga tcggctgctt gcagtgctcg gccaggatct tgttcaggcg
     1141 ctcgcggatg gtgaggattt cacgggcatg gatctcgatg tccgaggcct gaccctggaa
     1201 gccacccagc ggctggtgga tcatcatgcg cgagtgcggc aggcagtaac gcttgccggc
     1261 ggcaccgcca gccagcagca gcgcccccat gctgcaggcc tggccgatgc agatggtgga
     1321 cacgtcgggc ttgatgaact gcatggtgtc gtagatcgac atgccggcag tcaccgagcc
     1381 gcccggggaa ttgatgtaca ggtgaatgtc cttgtccggg ttctcggcct cgaggaacag
     1441 cagctgagcc accaccaggt tggccatgta gtcctcgacc tggccgacca tgaagatcac
     1501 ccgctctttc agcaggcgag agtaaatgtc gtaagcacgc tcgccacggg cggactgctc
     1561 gatcaccatc ggcacgaggc cgccggcggc ttggatgtca ggcatggtgt tcatgaaaga
     1621 gttgtgcgac atgtctagcg atctctccct aatagtcatg tctctaaaga cgcataagcc
     1681 agcacgaagg ctggcttatg gttgtgctcg aacgaggcga gggatcaggc tgcttgcggg
     1741 gcttccgccg gcttgaccgc ttcttcgtag gagaccgctt tatcggtcac tttggccttc
     1801 tgcaggacag tatctacaac ttgttcttcc agtacaaccg aacgcacctc gttcagctgc
     1861 tggtcgttct tgtagtacca ggccacgacc tgctgcggct cctggtaggc ggaagccatt
     1921 tcttcgatca gttcgcgaac gcgggcttcg tcagccttca gctcgttctg cttgaccact
     1981 tcggcgacga tcagacccag cacgacgcgg cgcttggcct gctcttcgaa cagctcggcc
     2041 ggcagttggt ccggcttgat gttgccacca aactgctgga cggcctgcac gcgcagacga
     2101 ttcacttcgt tgccgatcag ggccttcggt acttcagccg ggttggcggc cagcaggcct
     2161 tccattacct ggttcttgac cttggacttg atggcctggc gcagctcgcg ctccatgttc
     2221 ttgcggactt cggtgcggaa accttccaga ccaccttcct tgatgccgaa cagggcgaag
     2281 aagtcgtcgt tcaattccgg cagctgcgga gcggagacgc tgttgacggt cacggtgaac
     2341 tcggcggtct taccggccag gtccaggttc tggtaatccg ccgggaaagt cgggttgatc
     2401 acgcgctctt caccggcctt gacgccgacc agggcatctt cgaagcccgg aatcatgcgg
     2461 ccggaaccca gcaccagcgg agtgcccttg gcgctgccgc cagcgaaggc ttcaccgtcg
     2521 atcttgccga cgaagtcgat gttcagttgg tcgccgttct cggcggcgcg ctcggcagcc
     2581 tcgaaacggg tgttctgctt gcgcaggatt tccagcatgt tgtcgacatc ggaatcctga
     2641 acgtcggcct gcaggcgctc gatctcgatg ccgtcgaagc cggccagctg gatttccggg
     2701 aacacttcga aggtggcgac gtactcgagg tccttgccct tctcgaaggc cttaggctcg
     2761 acggacggag cgccagccgg attcagcttc tgctcgacga tggcctcgta gaaggtggcc
     2821 tggatcaggt cgccgagggc ttcttgacgg gcggaatcct cgtaacgctg gcgaatcacg
     2881 ttcatcggca ccttgccggg acggaagcca ggcaccttgg cgcggcgggc agtctgctgc
     2941 agacgcttgg tcacttcggt ctcgatgcgc tcggccggca cgccgatggt catgcggcgc
     3001 tcgagagcgg aggtgctttc aacagaaact tgcatggata ttcctcgttg cacagacata
     3061 agccggccgt tccggcccca gaatcgaagc ggagcattct agtggctcgt ttgacagaag
     3121 tcacctgcgc aaacgggcac aaaaaacgac cgtatatata aggaagggaa tagcgagagg
     3181 gagatggtgc ggacggagag actcgaactc tcacaccttg cggcgccaga acctaaatct
     3241 ggtgtgtcta ccaatttcac cacgtccgcg tggtaacgct tgaaacgaaa acgccaggct
     3301 tttggcctgg cgttttctcg aatatggggt ggacgatggg aatcgaaccc acgacaccag
     3361 gagccacaat cctgtgctct accaactgag ctacgcccac catattgcgt tgcttgcgcc
     3421 tgatccgcca atggcgcacc cggcaggact cgaacctgcg accatccgct tagaaggcgg
     3481 atgctctatc cagctgagct acgggcgctt agtcatctgc ggaacagact ctaaagctac
     3541 agctccgacc gcttccggcc gttgccatct tacccagcgg ctggctgtgc tcgacaagcg
     3601 gggcgaatct tatagaggcc gtctgacagc gtcaacacga taatgaaaaa aatcctgttg
     3661 gataaaggag ttacgggaaa gcaccacgca tgcgcctttg ccccacccgc cacccatgcg
     3721 agaatgcgcg atcttttttc cacccttccc catggttaag caagcgtcat gaccgcaaaa
     3781 ctgatcgacg gcaagtccat cgccgccaac ctccgccagg aaatcgccaa acgtgtcgcc
     3841 gagcgccgcc agcagggcct gcgggctccg ggcctggccg tgatcctggt cggcagcgac
     3901 ccggcttccc aggtgtacgt ctcgcacaag cgcaaggact gcgaggaagt cggcttcgtt
     3961 tccgtggccc atgatctgcc cgccaccacc acccagggcg agctgctcgg gctgatcgac
     4021 cagctcaacc gcgacaacgc catcgacggc atcctggtgc agctgcccct gcccgcccac
     4081 ctggacgcct cgcaactgct cgagcgcatc aacccggaca aggacgtcga cggtttccat
     4141 ccgttcaacg tcggtcgcct gtcccagcgc atgccactgc tgcgctcctg cacgccgaag
     4201 ggcatcatga ccctgctgga aagcaccggc gtcgacctgc acggccagca tgccgtggtc
     4261 gtaggcgcct ccaacatcgt cggccggccg atggccctcg agctgctgtt ggccggctgc
     4321 accgtcaccg tgacccaccg tttcaccaaa gacctggcag gccacgtggc tcaggccgac
     4381 attgtcgtcg cggccgcggg caagaccggc ctggtcaagg gtgagtggat caagcaaggc
     4441 gcgatcgtca tcgacgtcgg catcaaccgc caggccgacg gcaagctggt cggcgacgtg
     4501 gagtacgacg tggctgccga gcgcgccggc tggatcaccc cggtgccggg cggcgtaggc
     4561 cccatgaccc gcgcctgcct gctggagaac accctgtacg ccgccgagca tctgcacgcc
     4621 tgatagcggc tccggccatg aaaaa
//
LOCUS       DATIHC010000530         1811 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_24026, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000530 DATIHC010000000
VERSION     DATIHC010000530.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1811
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24026"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..233)
                     /locus_tag="VLF16_08690"
     CDS             complement(<1..233)
                     /locus_tag="VLF16_08690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HSX70997.1"
                     /translation="MSLKITDDCINCDVCEPECPNGAISQGEEIYVIDPNLCTECVGH
                     YDEPQCQQVCPVDCIPLDDANVESKDQLMDKYRR"
     gene            complement(358..837)
                     /gene="coaD"
                     /locus_tag="VLF16_08695"
     CDS             complement(358..837)
                     /gene="coaD"
                     /locus_tag="VLF16_08695"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003176711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HSX70998.1"
                     /translation="MNRVLYPGTFDPITKGHGDLIERASRLFDTVIIAVAASPKKNPL
                     FPLEQRVELAREVTRHLPNVEVVGFSTLLAHFVKEQNANVFLRGLRAVSDFEYEFQLA
                     NMNRQLAPDVESMFLTPSEKYSFISSTLVREIAALGGDISKFVHPAVADALAERFKR"
     gene            complement(905..1279)
                     /locus_tag="VLF16_08700"
     CDS             complement(905..1279)
                     /locus_tag="VLF16_08700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013789301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantetheine adenylyltransferase"
                     /protein_id="HSX70999.1"
                     /translation="MGSKLIAGLLLIAGIIHLLPLVGVLGGERLNALYGLALDEPNLQ
                     ILMRHRAVLFGLLGALLVAAAFTPGLRGVALLGGLVSVVSFLLLTWSAPFYNEALRRV
                     VVADWAALACLLPAAALHLRAA"
     gene            complement(1282..>1811)
                     /locus_tag="VLF16_08705"
     CDS             complement(1282..>1811)
                     /locus_tag="VLF16_08705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HSX71000.1"
                     /translation="VDNALRMEQLPHTNVMLALLRDGFHPDSAEGTVELRGDGTPVLD
                     YRMTDYTWDGLRRAFHSMAEIQFAAGAKAVLPLHAAAEYVKSPAEARALIDRLDLRLF
                     QTRLGSAHVMGGCAMGEDATMAVTDSLGRHHQLENLSIHDGSLFPTSIGANPQLSIYG
                     LTAQLSTLLAERLWA"
BASE COUNT          303 a          570 c          648 g          290 t
ORIGIN      
        1 cgccggtact tgtccatcag ctggtccttg ctctcgacat tggcgtcgtc gagcgggatg
       61 cagtccaccg ggcagacctg ctggcattgc ggctcgtcgt agtggccgac gcattcggtg
      121 cacaggttgg ggtcgatcac atagatctcc tcaccctggg agatggcgcc gttcgggcac
      181 tcgggttcgc agacgtcgca gttgatgcag tcgtcggtga ttttcaggga catcggggca
      241 actcctgcca ggcccggcgg gctcggcact ctcaggcatt caatggggcg aattgtgccg
      301 gattgaccgg catcgcgcca tgcgcgggcg acggagccac ccgctcgcgg cccgagacta
      361 tcgcttgaaa cgctcggcca gggcgtcggc gacggccgga tggacgaact tgctgatgtc
      421 gccgcccagc gccgctattt cgcgcaccag ggtcgaggag atgaaggaat acttctccga
      481 cggggtgagg aacatgctct ccacgtccgg cgccaattgg cggttcatgt tggccagctg
      541 gaactcgtac tcgaagtcgg acaccgcgcg caggccacgg aggaacacgt tggcgttctg
      601 ctccttgacg aagtgcgcca gcagggtgga gaagccgacc acctcgacgt tgggcaggtg
      661 ccgggtgacc tcgcgggcga gttcgacgcg ttgttccagg gggaacagcg ggttcttctt
      721 cgggctggcg gccaccgcga tgatcacggt gtcgaacagg cgcgaggcgc gttcgatcag
      781 gtcgccatga cccttggtga tggggtcgaa agtgcccggg tacaacactc gattcatcgt
      841 ctcgtcctgc tcggagcggt aagagtcgcg gatggtagcg cagcgcttcc ccggcggaaa
      901 agcctcaggc tgcgcgcaga tgcagcgccg cggccggcaa caggcaggca agcgctgccc
      961 agtcggccac cacgacgcgg cgcagggcct cgttgtagaa gggagcgctc caggtcagca
     1021 ggagaaagct gaccacgctg accaggccgc cgagcaacgc cacgccgcgc aggccgggcg
     1081 tgaaggccgc ggccaccagc agcgcgccga gcaggccaaa cagcacggcg cggtggcgca
     1141 tcaggatctg caggttcggc tcgtccagcg ccagcccgta caaggcgttg agccgttcgc
     1201 caccgagcac gccgaccagc ggcagcaggt gaatgatgcc ggcgatcagc aacaggccgg
     1261 cgatcagctt gctgcccatg gtcaggccca gagacgctcg gccagcagcg tcgagagctg
     1321 ggcggtgagg ccgtagatcg atagctgcgg attggcgccg atgctggtgg ggaacagcga
     1381 gccatcgtgg atcgacaggt tctccagctg gtgatggcgg ccgaggctgt cggtgaccgc
     1441 catcgtcgcg tcctcgccca tggcgcagcc gcccatcacg tgggcgctgc ccaggcgggt
     1501 ctggaacagg cgcaggtcca ggcggtcgat cagcgcgcgg gcctcggccg ggctcttcac
     1561 gtactcggcg gcggcgtgca acggcagcac ggccttggcg ccggcggcga actggatctc
     1621 ggccatgctg tggaaggccc gacgcaggcc gtcccaggtg tagtcggtca tgcggtagtc
     1681 gagcaccggg gtgccgtcgc cgcgcagctc caccgtgccc tcggcgctgt ccggatggaa
     1741 gccatcgcgc agcagggcca gcattacgtt ggtatgcggc agctgttcca tgcgcagggc
     1801 gttgtcgacg c
//
LOCUS       DATIHC010000531         2620 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43477, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000531 DATIHC010000000
VERSION     DATIHC010000531.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43477"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..588)
                     /gene="lolB"
                     /locus_tag="VLF16_08710"
     CDS             complement(<1..588)
                     /gene="lolB"
                     /locus_tag="VLF16_08710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011167841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008320 - protein transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein insertase outer membrane protein
                     LolB"
                     /protein_id="HSX71001.1"
                     /translation="MFRHAIVFSLITLLAGCAGLTSREAVEGQGDPQQWQAHKARVAA
                     LDGWQINGKVGIRAPKDSGSGTLFWLQRQDYFDIRLSGPLGRGAARLTGREGNVLLEV
                     ASQGRYQAESPEALLEQQLGWRLPVSHLFWWVRGLPAPDSKSRVTLDADSHLARLEQD
                     GWQVQYLSYAEQDGYRLPERIKLHGADLDVTLVIKD"
     gene            complement(592..2316)
                     /locus_tag="VLF16_08715"
     CDS             complement(592..2316)
                     /locus_tag="VLF16_08715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSX71002.1"
                     /translation="MNKSLALLTASLLLAGCQTLAPAPDGTPPVEDTAASKAPTPKQY
                     ASFSEDTLYALLAAELAGQRNRFDIALGNYVQQANATQDPAVAERAFRIAEYLGAEQA
                     ALDTALIWSNNAPDSLDAQRAAAVQLARAGRYDESMEYMERVLLGQGDTHFDFLALSA
                     AETDPDTRDGLQQSFDRLLQKHPENGQLLFGKALLLHQDGRAEDALELLEAHDASQEE
                     IPPLLLRARLLQSLGRGEEALPLLEKGIEKHPEDKRLRLAYARQLVELKRLDEAKSEF
                     AGLVQRFPDDDDLRYSLALVCLEAEAWDEAIVYLEELVARDAHVDAAHFNLGRIYEQR
                     GEPESALIEYALVGPGEDYLPAQVRQTEILFEQGRMAEAGARLARARDSQPDYAIQLY
                     LIESEALANRQRHEEAWQVIVKALEQFPGDTNLLYTRAMLAEKRGDLAGLERDLRNII
                     EREPDNATALNALGYTLADRTTRYDEAKALIERAHQLNPEDPATLDSMGWVNYRLGNL
                     EEAERYLRAALAKYPDHEVAAHLGEVLWARGKQGEAREVWSSALEAQPDSPILRATIQ
                     RLTGSEKL"
     gene            2484..>2620
                     /locus_tag="VLF16_08720"
     CDS             2484..>2620
                     /locus_tag="VLF16_08720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HSX71003.1"
                     /translation="MAFLALGINHKTASVDVRERVAFTPEQLVEALQQLCRVTPSREA
                     A"
BASE COUNT          350 a          850 c          971 g          449 t
ORIGIN      
        1 gtccttgatc accagggtga cgtcaaggtc cgcgccgtgc agcttgatgc gctcgggcag
       61 gcggtagcca tcctgttcgg cgtagctcag gtactgcacc tgccagccgt cctgttccag
      121 gcgggccagg tggctgtcgg cgtcgagggt cacgcggctc ttgctgtccg gcgcgggcag
      181 gccgcgcacc caccagaaca ggtgcgacac cggcagacgc cagccgagtt gctgctccag
      241 cagcgcctcg ggcgattcgg cctggtagcg gccctggctg gccacttcca gcagcacgtt
      301 gccctcgcgc ccggtcaggc gcgcggcgcc gcggccgagc gggccggaca ggcggatatc
      361 gaagtaatcc tggcgctgca gccagaacag cgtgccgctg ccggaatcct tcggcgcgcg
      421 gatgccgacc ttgccgttga tctgccagcc atccagcgcg gcgaccctgg ccttgtgggc
      481 ctgccactgc tgcgggtcgc cctggccttc gacggcttca cggctggtga ggccggcgca
      541 gccggcgagg agggtgatca ggctgaagac gatggcgtga cgaaacatgg atcagagctt
      601 ctcggaaccg gtcaggcgct ggatggtggc gcgcaggatg gggctgtcgg gctgggcttc
      661 gagggcgctg gaccagacct cgcgggcctc gccctgcttg ccacgggccc agagcacttc
      721 gcccaggtgg gcggcgacct cgtggtcggg atacttggcc agggccgcgc gcaggtagcg
      781 ctcggcctcc tcgagattgc ccaggcgata gttgacccag cccatgctgt cgagggtggc
      841 ggggtcttcg ggattgagct ggtgggcgcg ctcgatcagc gccttggcct cgtcgtagcg
      901 ggtggtgcgg tcggccaggg tgtagccgag ggcgttcagc gccgtggcgt tgtccggctc
      961 gcgctcgatg atgttgcgca ggtcgcgctc caggccggcc aggtcaccgc gcttctcggc
     1021 gagcatggcg cgggtataga gcaggttggt gtcgccgggg aactgctcca gcgccttgac
     1081 gatgacctgc caggcctcct cgtggcgctg gcggttggcc agggcctcgg actcgatcag
     1141 gtacagctgg atggcgtagt cgggctggct gtcgcgggcg cgggccaggc gtgcaccggc
     1201 ctcggccatg cggccctgct cgaaaaggat ctcggtctgg cgcacctggg cgggcaggta
     1261 gtcctcgccg gggccgacca gggcgtattc gatcagcgcg ctttccggct cgccgcgctg
     1321 ctcgtagatg cgccccaggt tgaaatgcgc ggcgtcgacg tgggcgtcgc gcgccaccag
     1381 ttcttccagg tagacgatgg cctcgtccca ggcctccgcc tccaggcaca ccagggccag
     1441 ggagtagcgc aggtcgtcat cgtccgggaa gcgctggacc aggccggcga actcgctctt
     1501 ggcctcgtcc aggcgcttga gttcgaccag ctggcgggcg taggccaggc gcaggcgctt
     1561 gtcctcgggg tgtttctcga tgcccttctc cagcagcggc agcgcctctt cgccgcggcc
     1621 caggctctgc agcaggcggg cgcgcagcag cagcggcgga atttcctcct ggctggcgtc
     1681 gtgcgcctcg agcagttcca gggcgtcctc ggcgcggccg tcctggtgca gcagcagggc
     1741 cttgccgaac agcagctggc cgttctccgg gtgcttctgg aggaggcggt cgaagctctg
     1801 ctgcagaccg tcgcgggtat ccgggtcggt ctcggcggcg gacagcgcga ggaagtcgaa
     1861 atgggtgtcg ccctggccca gcaggacgcg ctccatatat tccatggatt cgtcgtagcg
     1921 gccggcgcgg gccagttgca cggcggcggc gcgctgggcg tcgaggctgt ccggcgcgtt
     1981 gttcgaccag atcagcgcgg tgtccagcgc ggcctgctcg gcgcccaggt attcggcgat
     2041 gcggaaggcg cgctcggcca cggccgggtc ctgggtggca ttggcctgct gtacgtagtt
     2101 gccgagggcg atgtcgaagc gattgcgctg gccggccagt tcggcggcca gcagggcgta
     2161 cagggtgtcc tcgctgaacg aggcgtactg cttgggcgtc ggggccttgc tggccgcggt
     2221 gtcctccacc ggcggggtgc cgtcgggcgc gggggccagg gtctggcagc cggcgagcag
     2281 gagggaggcg gtcagcaacg cgagggattt attcataaga aaagctgcgg tccgtggcgt
     2341 ggctgcatca tgacacaagc ggcgggcgca agcccaccgc gcctcaggga ctcggctatc
     2401 gggtcaattt gtcgcaacag ttgttctccc tggggtgacg taggacaatc gcccgctatc
     2461 tcgaattccc ttagcgaccc tgcatggcct tcctcgccct cggcatcaac cacaagaccg
     2521 cctcggtgga cgtccgcgaa cgcgtggcct tcacccccga gcaactggtc gaggccctgc
     2581 agcagctctg tcgcgtcacc cccagccgcg aggcggcgat
//
LOCUS       DATIHC010000532         1752 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43483, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000532 DATIHC010000000
VERSION     DATIHC010000532.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1752
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43483"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..427)
                     /gene="rsmH"
                     /locus_tag="VLF16_08725"
     CDS             complement(<1..427)
                     /gene="rsmH"
                     /locus_tag="VLF16_08725"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HSX71004.1"
                     /translation="MTSSYRHITVLLDEAVEALAVRADGCYLDGTFGRGGHSRLILER
                     LGPDGRLLGFDKDPQAIATGNALAAEDGRFVVVQRSFAELGDEASARGLVGRVDGVLL
                     DLGVSSPQLDDAERGFSFLNDGPLDMRMNPDAGVSAAQFI"
     gene            complement(430..885)
                     /gene="mraZ"
                     /locus_tag="VLF16_08730"
     CDS             complement(430..885)
                     /gene="mraZ"
                     /locus_tag="VLF16_08730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003103101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0051302 - regulation of cell division
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HSX71005.1"
                     /translation="MFRGANAISLDAKGRLAMPSRYREELVARCAGQLIVTIDAVDPC
                     LCVYPLPEWELIEAKLRDLPSLREETRRLQRLLIGNAVDIELDGSGRFLVPPRLRTHA
                     GLDKHAMLVGQLNKFQLWNEDAWNALADADLAAIKQPGALPDDLRDLIL"
     gene            complement(1186..1535)
                     /gene="rnpB"
                     /locus_tag="VLF16_08735"
     ncRNA           complement(1186..1535)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="VLF16_08735"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(1576..>1752)
                     /locus_tag="VLF16_08740"
     CDS             complement(1576..>1752)
                     /locus_tag="VLF16_08740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HSX71006.1"
                     /translation="AGWRAPEGDDALSAEALRVLDLLLGEMPVKRAAALAAEITGVRK
                     NLLYQAALDRQKSS"
BASE COUNT          336 a          556 c          531 g          329 t
ORIGIN      
        1 cgatgaactg ggcggcgctg acgccggcgt ccggattcat gcgcatgtcc agcgggccgt
       61 cattgaggaa actgaagccg cgctcggcgt cgtccagctg cggcgaggac acgccgagat
      121 ccagcagcac accgtcgacc cggcccacca ggccacgcgc cgacgcctcg tcgcccagct
      181 cggcgaagct gcgctgtaca acgacgaagc ggccgtcttc ggccgccagt gcattccccg
      241 ttgcgatggc ttgtgggtcc ttgtcgaacc cgagcagccg accgtctggc ccgagccttt
      301 cgagaatcaa ccgactgtgc ccgcccctcc cgaaggtgcc gtccagatag cagccatcgg
      361 cgcgcacggc gagggcctcg acggcctcgt cgagcagcac ggtgatgtgg cggtagctgc
      421 tggtcatggt cacaggatca ggtcgcgcag gtcgtccggc agagcgccgg gttgtttgat
      481 ggcagccagg tcggcgtctg caagcgcgtt ccaggcatct tcgttccaca gttggaattt
      541 gttcagctgg ccgaccagca tcgcgtgctt gtcgagaccg gcatgggtgc gcagacgcgg
      601 cggcacgagg aaacgaccgc taccgtccag ctcgatgtcc acggcgttgc cgatcagcag
      661 gcgctgcagg cggcgggttt cttcgcgcag ggaaggcagg tcacggagct tggcttcgat
      721 cagctcccac tcgggcagcg gatagacgca gagacagggg tcgacggcat cgatcgtcac
      781 gatgagctgg ccagcacaac gcgcaacgag ctcctcacga taccgactag gcatcgcgag
      841 tctccccttg gcatcaaggc tgatggcgtt agctccgcga aacaaggctg cgcttcccca
      901 ctgtgattag ctttccgtgc ccctatgacc cacttttttc cactttgtgc cacttcggca
      961 cactatagaa atgcgagcac cccagcgtca aggcgcgcca aataggaaaa atccttatgg
     1021 gacggcgatt tagcgaacta aggagaggtt tggaagaagc gaaacggggg ctttttggag
     1081 acgaatttga gcgacttcag cgagctgaat ttcaaactta aagtagtttc ttaagagtaa
     1141 gattttttcg gtattacaag cgaggcgaga agaagcagaa gaaaggagga gagtcgatct
     1201 gtaagccggg ttctgtcgag gacagtcatt cctctacgac gcacatcgct gtacgcctct
     1261 agcaacctac ccggttccag cgcgggccac gccgatggaa ccctatttgg tcttgctccg
     1321 agtggggttt gcctagccac gaactgttac cagccgtgcg gtgcgctctt accgcacctt
     1381 ttcaccctta ccggcgcttg cgcgcttagg cggttatttt ctgtggcact ttccgtaggc
     1441 tcgcgcctcc caggcgttac ctggcactcc gccctatgga gcccggactt tcctccccct
     1501 tccagatgga aggcagcgac tgtccgatcg actctccgcc gccaagggta gcgaggcaag
     1561 ccgtcgagaa caagctcagg acgacttctg ccgatcgagc gccgcctgat agagcaggtt
     1621 cttgcgcacc ccggtgatct ccgcagccag cgccgccgca cgcttgacgg gcatctcgcc
     1681 gagcagcaga tccagcaccc gcagcgcctc cgcggacagc gcatcgtcac cttccggcgc
     1741 gcgccagccg gc
//
LOCUS       DATIHC010000533         2885 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34153, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000533 DATIHC010000000
VERSION     DATIHC010000533.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2885
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34153"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..949)
                     /locus_tag="VLF16_08745"
     CDS             complement(<1..949)
                     /locus_tag="VLF16_08745"
                     /EC_number="1.8.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0050311 - sulfite reductase (ferredoxin)
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite/sulfite reductase"
                     /protein_id="HSX71007.1"
                     /translation="MYVYDDYDQRIVEDRVKQFRDQTRRYLAGELSGEEFRPLRLQNG
                     LYIQRFAPMLRIAVPYGLLNSTQVRKLAQIARDYDKGYAHISTRQNVQFNWPELEDVP
                     EILAELATVQMHAIQTSGNCVRNTTTDQFAGVARDEIVDPRPWCEIIRQWSTFHPEFT
                     HLPRKFKIAVNGAVSDRAAIEVHDIGLEAVKNDAGELGFRVSVGGGLGRTPIVGSFIN
                     EFLPWQHLLGYLDAILRVYNRYGRRDNKYKARIKILVKALTPEVFAEKVNAEFAHLKD
                     GPTTLTEAEVARVAAHFVDPAYRELADQDAELAALDAQHP"
     gene            complement(1552..1770)
                     /locus_tag="VLF16_08750"
     CDS             complement(1552..1770)
                     /locus_tag="VLF16_08750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004422559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2970 domain-containing protein"
                     /protein_id="HSX71008.1"
                     /translation="MEQQDDDKPLTFREMLQSVLAAAFGVQSGKNRTRDFSRGKPSHF
                     ILLGVLFTSVFVVVLFALVRLVLHLAGV"
     gene            complement(1822..>2885)
                     /locus_tag="VLF16_08755"
     CDS             complement(1822..>2885)
                     /locus_tag="VLF16_08755"
                     /inference="COORDINATES: protein motif:HMM:NF015252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="lipase secretion chaperone"
                     /protein_id="HSX71009.1"
                     /translation="TLPRHARREENSMSGRFILAALALGAVAVGGTLALYRPEPAPAT
                     SHSSTSSATERPEDARSRQASTLNRDLRETPTASLADPGPLPPSLQGARHGVALRMDE
                     RGKLILQADLLHLFDFYLAGREEEGLDKVLTRIHRELAAQLREPALDQARDLLRRYVD
                     YRIALQELPEAGASLDAVALRQRLDALNAVRQRYFSAEEYALFFARENAEDEYRVQRL
                     ALSRQDGLSDEQRDLALAELELQLPEDVRAARAESSRYGDLYATTQALQAQGASAEEI
                     RQVREQSLGSEAADALAELDRQQAAWQQRLADYAAERNRLRDSGLDNSQLQAAIADLQ
                     ASRFDERERLRVQALDAEL"
BASE COUNT          445 a          894 c         1036 g          510 t
ORIGIN      
        1 ccgggtgctg ggcgtcgagg gcggccagtt cggcgtcctg gtcggccagc tcgcggtagg
       61 ccgggtcgac gaagtgggcg gcgacgcggg cgacttcggc ttcggtcagg gtggtcgggc
      121 cgtccttgag gtgggcgaac tcggcattca ccttttcggc gaagacttcc ggggtcagtg
      181 ccttgaccag gatcttgatg cgcgccttgt acttgttgtc gcgacggccg tagcggttgt
      241 acacgcgcag gatggcgtcg aggtagccca gcaggtgctg ccagggcagg aattcgttga
      301 tgaagctgcc gacgatcggg gtacggccca ggccgccgcc gacggagacg cggaagccca
      361 gctcaccggc gtcgttcttc accgcttcca ggccgatgtc gtgcacctcg atggcggcgc
      421 ggtcgctcac ggcgccgttg acggcgatct tgaacttgcg cggcaggtgg gtgaactcgg
      481 ggtggaaggt cgaccactga cggatgatct cgcaccacgg gcgcgggtcg acgatctcgt
      541 cgcgggccac gccggcgaac tgatcggtgg tggtgttgcg cacgcagttg ccgctggtct
      601 ggatcgcgtg catctgcacg gtcgccagct ccgccaggat ctccggcacg tcctccagct
      661 ccggccagtt gaactgcaca ttctggcggg tgctgatgtg cgcgtagccc ttgtcgtaat
      721 cgcgcgcgat ctgcgccagc ttgcgcacct gggtggagtt cagcaggccg tacggcacgg
      781 cgatgcgcag catcggtgcg aagcgctgga tatagaggcc gttctgcagg cgcagggggc
      841 ggaactcctc gccggagagc tcaccggcca ggtagcggcg ggtctggtcg cggaactgct
      901 tgacgcggtc ctcgacgatc cgctgatcgt agtcgtcgta tacgtacata ggtgtcctgt
      961 ggaggtcagg ctactgcttc atcaggcagt gatggctttt gcgcgcgcac ggttaaaacg
     1021 cgcttttatc agggctgggg aaagatacca gctgacaaat atgcgaaaaa gtgaagtttc
     1081 catataagta catagctaaa gtagataagc gaagcgcctt gagcgcgacc ggagcctggt
     1141 cttaactcca gggaaaccac aacaacaacg aggccgccat gaccgactcc acctcccatg
     1201 acaaggacag cgccatcgac gcctgggcca tcttcatact gatcgcgatc gtggtgagca
     1261 cggcggtgtt ctgggtcagc cagcagtagg ctgacgccga accacaaggc cagcgaggga
     1321 tgacctgcgc tggccttttc atgtgtacga gcggtggctg catcgctagg aatattccgc
     1381 cagcgcgtat cgactgctat ctcggcgact gagccatcat gccggcggtt cgctcgtcgg
     1441 attgacgagg cggcggcatc ggcgtgaagc cggcagatga gcgccttatg cgcagggagg
     1501 tctacggctg ctcatcgatc cgccgctgcg ccagtcgaat gaccgggccg attagacgcc
     1561 ggccaggtgc agcaccagcc gcaccagcgc gaacagcacc accacgaata ccgaggtgaa
     1621 cagcacgccg agcaggatga aatggctcgg cttgccgcgg ctgaagtcgc gtgtgcggtt
     1681 cttgccgctc tgcacgccga aggcggcggc cagcacgctc tgcagcatct cgcggaaggt
     1741 cagcggcttg tcgtcgtcct gctgttccat cgttgcttct ccgcccgggt ctgcctacag
     1801 ggtagaccag ccttcgcggc gctagagctc ggcgtccagg gcctgcacgc gcaggcgctc
     1861 gcgttcgtcg aagcggctgg cctgcaggtc ggcgatggcg gcctgcagct ggctgttgtc
     1921 gagcccggag tcgcgcaggc ggttgcgctc ggcggcgtag tcggcgaggc gctgttgcca
     1981 ggcggcctgc tggcgatcca gctcggccag ggcatcggcg gcctcgctgc ccagggactg
     2041 ctcgcgcacc tggcggatct cctcggcgct ggcgccttgt gcctgcaggg cctgggtggt
     2101 ggcgtacagg tcgccgtagc ggctgctctc ggcgcgggcc gcgcgtacgt cctcgggcag
     2161 ctgcagttcc agctcggcca gcgccagatc gcgttgttca tcgcttaggc catcctgccg
     2221 actcagcgcc aggcgctgca cccggtattc gtcctcggcg ttctcgcggg cgaagaacag
     2281 cgcgtattcc tcggcgctga agtagcgctg gcgcaccgcg ttgagtgcgt ccaggcgctg
     2341 gcgcagggcg acggcgtcca ggctggcgcc ggcctcgggc agctcctgca gggcgatacg
     2401 gtagtccacg tagcggcgca gcaggtcgcg ggcctggtcc aacgccggct cgcgcagctg
     2461 ggcggccagc tcgcggtgaa tacgcgtcag gaccttgtcc aggccttcct cttcgcgacc
     2521 ggcgagatag aagtcgaaca ggtgcagcag gtccgcctgc aggatcagct tgccccgctc
     2581 atccatgcgc aaggccacgc cgtgacgggc gccttgcagc gacggcggca gcgggccggg
     2641 atcggccagg ctggcggtcg gcgtctcgcg caggtcgcgg ttgagggtgc tggcctggcg
     2701 gctgcgtgca tcctcgggcc gttcggtggc gctggacgtg gatgagtggg acgtagcggg
     2761 cgccggttcg gggcgataga gcgccagggt gccgccgacg gcgaccgccc ccagggccag
     2821 ggcggccagg atgaatctgc cggacatcga attctcctcg cggcgggcat ggcgcgggag
     2881 ggtcg
//
LOCUS       DATIHC010000534         2455 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_3814, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000534 DATIHC010000000
VERSION     DATIHC010000534.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2455)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2455)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2455
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3814"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..273
                     /locus_tag="VLF16_08760"
     CDS             <1..273
                     /locus_tag="VLF16_08760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/EbsC family protein"
                     /protein_id="HSX71010.1"
                     /translation="ALAHAAGAKKADMADPQQAQRSTGYLVGGISPLGQKKRLRTFID
                     ESARQHPTIHVSAGRRGLEVELAAEVLAQHTQGSFAAIGRTAIGRE"
     gene            305..1792
                     /gene="glpK"
                     /locus_tag="VLF16_08765"
     CDS             305..1792
                     /gene="glpK"
                     /locus_tag="VLF16_08765"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004370 - glycerol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006071 - glycerol metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HSX71011.1"
                     /translation="MSQYLLAIDQGTTSSRAIVFSAQGLPLASAQQEFKQYFPKDGWV
                     EHDAEEIWLTTLKVCREALASKGLKASEVLAIGITNQRETAVVWDAATGTPIHPAIVW
                     QDRRTADYCAGLKAEGHEALVSERTGLLIDPYFSATKLRWILDSVPGARERAERGELR
                     FGTVDCFLLWRLTGGKSHRTDASNASRTLLFNIHTQQWDEELLRLFDIPRSLLPEVLD
                     CAADFGTTEPALLGAGIPVLGMAGDQQAALIGQACFDAGMVKSTYGTGCFMIQNTGAT
                     PVVSKNRLLTTVGYRLNGKVTYAVEGSIFVAGAAVQWLRDGIKLISDARDTESLAEQT
                     GDTCGVYLVPAFTGLGAPYWDPKARGAIFGLTRDTGIKEIVTAGLQSVCYQTRDLLEA
                     MRQDGAAEPSALRVDGGMVVNNWVMQFLADVLGVPVERPVVTETTALGVAYLAGLQAG
                     LYRDLDEIASHWHRQQRFAPRMADAHRGKLYAGWLDAVKRVRSEG"
     gene            1833..>2455
                     /locus_tag="VLF16_08770"
     CDS             1833..>2455
                     /locus_tag="VLF16_08770"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HSX71012.1"
                     /translation="MQPRRRLPLLSPLLTLLACLAAAGQAHGETLVIAADPWCPINCA
                     ADAPRPGILVELARDIFAEHGIAVRYETRNWARVLREVRRGEINAAVGAGRADAPDFV
                     FTDTPVAMSRNCFYTLPESQWLFSGIESLKAVRLGVINDYSYGELLNAYIATRPGDRV
                     QVAAGSTALDINLSKLARGRLDAVLENRWVLQTRLAALGRSGELREAG"
BASE COUNT          394 a          888 c          831 g          342 t
ORIGIN      
        1 gccctggcgc atgccgccgg ggcgaagaag gccgacatgg ccgacccgca gcaggcccag
       61 cgcagcaccg gctacctggt cggcggtatc agccccctgg ggcagaagaa gcgcctgcgc
      121 accttcatcg acgaatccgc acgccagcac ccgaccatcc atgtcagcgc cggccgccgc
      181 ggcctggaag tggagctggc ggccgaggtc ctggcccagc acacccaggg cagcttcgcc
      241 gccatagggc gcaccgccat tggcagggaa tgaccccgcc cgcataacaa caaggaaaac
      301 gcgcatgtcc caatacctgc ttgccatcga ccagggcacc accagttccc gcgccatcgt
      361 cttcagtgcc caggggttgc cactggccag cgcccagcag gagttcaagc agtatttccc
      421 gaaggacggc tgggtcgagc acgacgccga agagatctgg ctgaccaccc tcaaggtctg
      481 tcgcgaggcc ctcgccagca agggcctaaa ggccagcgag gtgctcgcca tcggcatcac
      541 caaccagcgc gagaccgccg tggtgtggga cgcggccacc ggcacgccga tccacccggc
      601 catcgtctgg caggatcgcc gcaccgccga ctattgcgcc gggctcaagg ccgagggcca
      661 cgaggccctg gtgagcgagc gcaccggcct gctgatcgat ccctacttct ccgccaccaa
      721 gctgcgctgg attctcgaca gcgtgcccgg cgcccgcgag cgcgccgagc gtggcgagct
      781 gcgcttcggc accgtcgact gcttcctgct gtggcgcctg accggcggca agtcgcaccg
      841 caccgacgcc agcaacgcct cgcgcacgct gctgttcaac atccacaccc agcagtggga
      901 cgaagagctg ctcaggctgt tcgacatccc gcgcagcctg ctgccggagg tgctggactg
      961 cgccgccgac ttcggcacca ccgagccggc gctgctcggc gcgggcattc cggtgctggg
     1021 catggccggc gaccagcagg ccgcgctgat tggccaggcc tgcttcgacg ccggcatggt
     1081 caagagcacc tacggcaccg gctgcttcat gatccagaac accggcgcca cgccggtggt
     1141 gtcgaagaac cgcctgctga ccaccgtggg ctaccgcctg aacggcaaag tcacctatgc
     1201 ggtggagggc agcatcttcg tcgccggcgc cgccgtgcag tggctgcgcg acggcatcaa
     1261 gctgatcagc gacgcccgcg acaccgagtc cctggccgag cagaccggcg acacctgcgg
     1321 cgtgtacctg gtgccggcct tcaccggcct cggcgcgccg tactgggacc ccaaggcgcg
     1381 cggcgccatc ttcggcctga cccgcgacac cgggatcaag gagatcgtca ccgccggcct
     1441 gcagtcggtg tgctaccaga cccgcgacct gctcgaggcc atgcgccagg acggcgccgc
     1501 cgagcccagc gcgctgcggg tggacggcgg catggtggtg aacaactggg tcatgcagtt
     1561 cctcgccgac gtgctcggcg tgccggtgga gcgtccggtg gtgaccgaaa ccacggcgct
     1621 gggcgtggcc tacctggccg gcctgcaggc cgggttgtac cgcgatctgg acgagatcgc
     1681 cagccactgg caccgccagc agcgcttcgc cccgcgcatg gccgacgccc accgcggcaa
     1741 gctctacgcc ggctggctgg atgcggtgaa gagggtacgc agcgaaggct gaaggtgata
     1801 caacggcgcg agttcttcgc cgagttcgtc gcatgcagcc gcgccgtcgc ctgccgctcc
     1861 tttctcccct cctgacgctg ctcgcctgtc tggccgcggc gggccaggcg catggcgaaa
     1921 cgctggtcat cgccgccgac ccctggtgcc cgatcaattg cgcggccgac gcgcccaggc
     1981 cgggcatcct ggtcgagctg gcgcgggaca tcttcgccga acacggcatc gccgtgcgct
     2041 acgagacgcg caactgggcg cgggtgctgc gcgaggtgcg ccgcggcgag atcaatgccg
     2101 cggtcggcgc cggccgcgcg gatgcgccgg attttgtgtt caccgatacc ccggtggcca
     2161 tgtcgcgcaa ctgcttctac accctcccgg agtcgcagtg gcttttcagc ggcatcgagt
     2221 cgctgaaggc ggtgcggctc ggcgtgatca acgactacag ctacggcgaa ctgctcaacg
     2281 cctacatcgc gacgcgcccg ggcgatcggg tgcaggtggc cgccggtagc accgcgctgg
     2341 acatcaacct gagcaagctg gcccgcggcc gcctggacgc ggtgctggaa aaccgctggg
     2401 tgctgcagac gcggctggcc gccctggggc gcagcggcga gctgcgcgag gcggg
//
LOCUS       DATIHC010000535         2768 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36561, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000535 DATIHC010000000
VERSION     DATIHC010000535.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2768)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2768)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2768
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36561"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(77..1000)
                     /locus_tag="VLF16_08775"
     CDS             complement(77..1000)
                     /locus_tag="VLF16_08775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015278484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX71013.1"
                     /translation="MLRLDDIALFVRTAELGSLSAAARELDCSPAVASAALKRLEAQL
                     QVRLLLRSTRSLRLTAEGEQYLIHARAALASLESGRQQLAGTRDEISGVLQIAAPSDF
                     GRNALLPWLDQFQAERPQLSLRLLLSDRVADLFRQPVDIALRYGEPEDSSLVALPVAA
                     GNRRVLCGAPAYFARHGRPGAPAELRRHNCLLYMLGGRAHERWSFVDGKRSEALTVSG
                     NRVSDDADVVRRWAVAGQGLVYKSWLDVADDVRDGRLEVALPGWHGEPTPLNLICAHR
                     DQLSGPVRLLREFLQQRCAELLARAPWRAAV"
     gene            1155..2168
                     /locus_tag="VLF16_08780"
     CDS             1155..2168
                     /locus_tag="VLF16_08780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004024 - alcohol dehydrogenase activity,
                     zinc-dependent [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006113 - fermentation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase family
                     protein"
                     /protein_id="HSX71014.1"
                     /translation="MKAIAYYQSLPIDHAESLLDVELPAPQPGPRDLLVQVRAISVNP
                     VDTKIRQRVAPEAGQAKVLGWDVAGEVVAVGDEVRQFRPGDKVFYAGAIDRAGANSEL
                     HVVDERIVGRMPGSLDFARAAALPLTAITAWELLFERLGVREGQGDSGQSLLVIGAAG
                     GVGSILVQLARQLTGLTVVGTASRAETQDWVRELGAHHVIDHGQPLLPQLEALGIAQV
                     SMVASLTHTDQHLDQLVEALAPQGKLALIDDPAQLDVAKLKRKSLSLHWEFMYTRSLF
                     QTDDMIEQHRLLNRVSQLIDDGVLKTTLGEHFGRIDAANLKRAHALLESGKARGKIVL
                     EGF"
     gene            2260..>2768
                     /locus_tag="VLF16_08785"
     CDS             2260..>2768
                     /locus_tag="VLF16_08785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71015.1"
                     /translation="MDSTLSRPLRLAGLYLLFGIAWILFSDLLLQALGLPPAAQTFKG
                     LIFVVLGALLVLLLCRYQQRVQQRLLHELDDRHSQLQRAQHDAGLGLWRFDGRLQCSE
                     VALRLFERDAEPQELNLEDLLGWIYPGDRDAARRALDALRQDGTPLLINVRLNRTGHQ
                     PPLWLLLRG"
BASE COUNT          408 a         1000 c          960 g          400 t
ORIGIN      
        1 gagcagcagg agtttgcgca tgggatcttc cttctgtgat gacgtctgga aaccggccga
       61 gccggcgttg ctcagcttag acggcggctc gccagggcgc ccgggccagc agttcggcgc
      121 agcgctgctg gaggaactcg cgcagcaggc gcaccgggcc gctgagctgg tcgcggtggg
      181 cgcagatcag gttgagcggc gtcggctcgc cgtgccagcc gggcagcgcc acttccaggc
      241 gaccgtcgcg cacgtcgtcc gccacgtcca gccaggattt gtataccagc ccctgccccg
      301 ccaccgccca gcgccgcacc acgtcggcgt cgtcgctgac gcggttgccg ctgaccgtca
      361 gcgcctcgct gcgcttgccg tcgacgaagc tccagcgctc gtgcgcgcgg ccgccgagca
      421 tgtacagcag gcagttgtgg cggcgcagtt ccgcaggcgc gcccggccgg ccgtggcggg
      481 cgaaataggc cggcgcgccg cacagcacgc ggcggttgcc ggccgccacc ggcagcgcca
      541 ccaggctgga gtcctccggc tcgccgtagc gcagggcgat gtccaccggt tggcggaaca
      601 ggtcggcgac ccggtcgctg aggagcaggc gcagcgacag ctgcgggcgt tcggcctgga
      661 actggtcgag ccacggcagc agcgcattgc ggccgaagtc cgacggcgcc gcgatctgca
      721 gcacgccgct gatctcgtcg cgggtgccgg ccagctgctg gcgaccgctc tccaggctgg
      781 ccagcgcggc gcgtgcgtgg atcaggtact gctcgccctc ggcagtcagg cgcaggctgc
      841 gggtggagcg cagcaacagc cgcacctgca gctgcgcctc cagacgcttg agcgcggcgc
      901 tggccaccgc cggcgaacag tccagctcgc gggcggcggc ggacagactg cccagttcgg
      961 cggtgcggac gaacagggcg atgtcatcga ggcgcagcat ctcggctcca ttttcaaaat
     1021 cagattgaaa gagactctat ggcagccccg tttttctcgc cagccgatta accgaacatg
     1081 cgcccaacgc cagcccggcc cgccgactaa gctggagcat ccgcctttgc catcgcccct
     1141 cgaggacctg ccgcatgaaa gccatcgcct attaccagtc cctgcccatc gaccacgccg
     1201 agtcgctgct cgacgtcgag ctgcccgcgc cgcagcccgg cccgcgcgac ctgctggtgc
     1261 aggtcagggc catctcggtc aacccggtgg acaccaagat ccgccagcgg gtggcgcccg
     1321 aagcgggcca ggccaaggtg ctgggctggg acgtggccgg cgaggtggtt gcggtgggcg
     1381 acgaggtgcg ccagttccgc cctggtgaca aggtgttcta cgccggcgcc atcgaccgcg
     1441 ccggtgccaa cagcgagctg catgtggtgg acgagcgcat cgtcgggcgc atgcccggct
     1501 cgctggactt cgcccgcgcc gcggccctgc cgctgaccgc catcaccgcc tgggagctgc
     1561 tgttcgaacg cctcggcgtg cgtgagggcc agggcgacag cggccagagc ctgctggtga
     1621 tcggcgccgc cgggggcgtt ggctcgatcc tggtgcagct ggcgcgccag ctcaccggcc
     1681 tgaccgtggt cggcaccgcc tcgcgcgccg agacccagga ctgggtgcgc gaactgggcg
     1741 cccatcacgt catcgaccac ggccagccgc tgctgccgca gctcgaggcg ctgggcatcg
     1801 cgcaggtgag catggtcgcc agcctgaccc acaccgatca gcacctggac cagctggtcg
     1861 aggcgctggc gccccagggc aagctggcgc tgatcgacga cccggcgcag ctggacgtgg
     1921 ccaagctcaa gcgcaagagc ctgtcgctgc actgggagtt catgtacacc cgctcgctgt
     1981 tccagaccga cgacatgatc gagcaacacc gcctgctcaa ccgcgtgagc cagctgatcg
     2041 acgatggcgt gctgaagacc accctgggcg agcacttcgg ccgcatcgac gccgccaacc
     2101 tgaagcgcgc ccatgccctg ctggagagcg gcaaggcgcg cggcaagatc gtcctcgagg
     2161 gcttctgacc ggcgtccggc aggccggacc cgagcggcta gactgaagtg gcccggcggc
     2221 gcgcaccgcc gggcacgctt ccctagtcga gggtctggca tggattccac gctatcccgg
     2281 ccgctacgcc tggccggcct ctatctcctc ttcggcatcg cctggatcct gttcagcgac
     2341 ctgctgctgc aggccctggg cctgccgccc gcggcgcaga ccttcaaggg gctgatcttc
     2401 gtcgtcctcg gcgccttgct ggtgctgctg ctctgccgat accagcagcg ggtacagcag
     2461 cgcctgctgc atgagctgga cgatcggcac tcgcaactgc aacgggccca gcacgacgcc
     2521 ggtctcggcc tgtggcgctt cgacggccgc ctgcagtgct ccgaggtcgc cctgcggctg
     2581 ttcgagcgcg acgccgagcc gcaagagctg aacctggaag acctgctcgg ctggatctac
     2641 ccgggcgacc gcgacgcggc ccggcgcgcc ctggacgcgc tgcgtcagga cggcacgccg
     2701 ctgctgatca acgtgcgcct gaaccgcacc ggccaccagc cgccgctgtg gctgctgctg
     2761 cgcggcag
//
LOCUS       DATIHC010000536         1848 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34173, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000536 DATIHC010000000
VERSION     DATIHC010000536.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1848
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34173"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..742)
                     /locus_tag="VLF16_08790"
     CDS             complement(<1..742)
                     /locus_tag="VLF16_08790"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019437940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HSX71016.1"
                     /translation="MQLQDYGLILAFFVLVLAPAPWLGRYLYRAMEGERTLLTPLLQP
                     LERACFRVAGIDQKREQDWKTYALALLTFTLASLLTLFAILLLQGVLPLNPRQLPGLE
                     WTLAFNTAVSFVTNTNWQAYSGEAALSYFSQAVGLAVQNFVSPAVGLAVMVAFARGIA
                     RKSSAGIGNFWVDLTRATLYGLLPLCLILALLLVWQGVPQTFMDYAQAKTLMGADQTI
                     PLGPAASQIAIKQLGTNGGGFFGVNSAHP"
     gene            complement(751..840)
                     /gene="kdpF"
                     /locus_tag="VLF16_08795"
     CDS             complement(751..840)
                     /gene="kdpF"
                     /locus_tag="VLF16_08795"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003226853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
                     /protein_id="HSX71017.1"
                     /translation="MSILDGVSLGLALGLFIYLLVALLRAERG"
     gene            complement(1020..>1848)
                     /locus_tag="VLF16_08800"
     CDS             complement(1020..>1848)
                     /locus_tag="VLF16_08800"
                     /inference="COORDINATES: protein motif:HMM:NF017870.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF945 family protein"
                     /protein_id="HSX71018.1"
                     /translation="DNAPILVKDLSQLDETSEADSKLAGRSTYKIGMVSYQGHDIGGL
                     EMISSVKNLDAGALQSMLALYSDIIKSTGQLQQASLDAESGLPELSEAQKAQLMVDVE
                     KLLAGKPGVALERLAFKTASGESSLSLSVDLNKPESFELPAPELAKQLVGQLDAKVSV
                     SKAMIGDLVGLQATLGGQTDKEAVAQQASMMTEMASGMALSTELARLEGDAIVSTLHY
                     ADDKVDFNGKQMTVEEFVAMAFASGAGLGGMGGGAMADEEPALEGLELEEGGEELAE"
BASE COUNT          290 a          614 c          636 g          308 t
ORIGIN      
        1 acgggtgcgc cgagttcacg ccgaagaagc cgccgccgtt ggtgccgagc tgcttgatgg
       61 cgatctggct ggccgcagga cccagcggga tggtctggtc cgcacccatc agggtcttgg
      121 cctgggcgta gtccatgaag gtctgcggca cgccctgcca gaccagcagc agcgccagga
      181 tcaggcacag cggcagcaag ccgtagagcg tggcgcgggt caggtcgacc cagaaattgc
      241 cgatgccggc gctcgacttg cgcgcgatgc cgcgggcgaa cgcaaccatg acggccaggc
      301 ccaccgccgg gctgacgaag ttctgcacgg cgaggccgac cgcctggctg aagtagctga
      361 gcgccgcctc gccgctgtag gcctgccagt tggtgttggt gacgaagctc accgccgtat
      421 tgaacgccag ggtccactcc aggcccggca gctgccgcgg gttgagtggc agcacgccct
      481 gcagcaggag gatggcgaac agcgtcagca gagaggccag ggtaaaggtc agcagcgcca
      541 gggcgtaggt cttccagtcc tgctcgcgct tttggtcgat gccggcgacg cggaagcagg
      601 cccgctcgag cggttgcagc agcggcgtca gcagggttcg ctcaccctcc atggcgcggt
      661 acaggtagcg ccccagccag ggcgcgggcg ccagtaccag gacgaagaag gccaggatca
      721 gcccgtagtc ttgaagttgc atggggcccc ctagccgcgc tcggcgcgca acagcgccac
      781 cagcaggtag atgaacagcc ccagggccag gcccagggac accccgtcga gaatgctcat
      841 gtgatcgctc cgtgatgcgg actgcgccgc cgtggaggca ttcttcgccg tgggggcgta
      901 aaggagcgat tgcgctgggc ggggtggcgg ataaagaaag cgtaaatttc cgcccgccgg
      961 aaacgcgaag gcccgcgact ccctgggaag tcgcgggcct tcgcaggcgc ggtgaaggct
     1021 tattcggcga gttcttcgcc gccctcctcc agctccaggc cctccagcgc gggctcctcg
     1081 tcggccatgg cgccaccgcc catgccaccg aggccggcgc cgctggcgaa ggccatggcg
     1141 acgaactctt cgacggtcat ctgcttgccg ttgaagtcga ccttgtcgtc ggcgtaatgc
     1201 agggtggaga cgatggcgtc accctccagc ctggccagct cggtggacag ggccatgccg
     1261 ctggccatct cggtcatcat cgaggcctgc tgggccacgg cttccttgtc ggtctgcccg
     1321 cccagggtgg cctgcaggcc gaccaggtcg ccgatcatgg ccttggacac ggacaccttg
     1381 gcgtccagct ggccgaccag ctgcttggcc agctccggcg ccggcagctc gaaggactcg
     1441 ggcttgttca ggtccaccga caggctcagg ctgctctcgc cgctggcggt cttgaacgcc
     1501 agccgctcca gggcgacgcc cggcttgccg gccagcagct tctcgacatc caccatcagc
     1561 tgggccttct gcgcctcgct cagttccggc aggccgctct cggcgtccag gctggcctgt
     1621 tgcagttggc cggtgctctt gatgatgtcg ctgtacagcg cgagcatcga ttgcagggcg
     1681 ccggcgtcca ggttcttcac gctggagatc atctccaggc caccgatgtc gtggccctgg
     1741 tagctgacca tgccgatctt gtaggtcgag cggccggcca gcttgctgtc ggcttcgctg
     1801 gtctcgtcga gctgcgacag gtccttgacc aggatcggcg cgttgtcg
//
LOCUS       DATIHC010000537         2639 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31850, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000537 DATIHC010000000
VERSION     DATIHC010000537.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2639
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31850"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1402
                     /locus_tag="VLF16_08805"
     CDS             <1..1402
                     /locus_tag="VLF16_08805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PhoX family phosphatase"
                     /protein_id="HSX71019.1"
                     /translation="VEIRRDRFGDWQVVPGRFNRRVTAATPMQMVGPARGHALLRTRH
                     SPDGTASRGTQNNCANGFTPWGTYLTCEENWAGYFATRDTALPRELQRYGLRSSSRFG
                     WDTLPGDEFQRFDATRKAGDASGDYRNEPNHFGWIVEIDPFDPNSTPVKHSALGRFAH
                     EGLVFAPTRPGRPLVCYSGDDSQNEYIYKYVSRGKYLPLLRHPSRLLDDGTLYVARFN
                     PDGRGEWLALDLRDRAFRAACRKAGVSFADQGEVLINTRLAADIVGATKMDRPEWGAV
                     NPDNGEVFFTLTNNSSRTEADAANPRAANPYGHIIRWRENRRDHAGRQFRWDIFLLAG
                     PQGDSRSPNGAALDEHNILASPDGLWFDPDGRLWIQTDMSGSQLASGPFGHNQMLVAD
                     PRSGQIKRFLVGPFGAEVTGISATPDFRTLFVNIQHPGEGSTASNLLSTWPDGPGRRP
                     RSATVVVTREDGKRLM"
     gene            1636..2043
                     /locus_tag="VLF16_08810"
     CDS             1636..2043
                     /locus_tag="VLF16_08810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003284418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042546 - cell wall biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HSX71020.1"
                     /translation="MEEVIDQLRELNEPVPVPLELPEEETLVEIQEQILIHLPFELRE
                     YLLKVSDVVYGRLEPVTASDPHSHTYLPEVASVAWDRGLPRDLVPLCQDGRDYYAVDV
                     EGTVWLWDGDEGELTDESWDSVWHWCRDVWLES"
     gene            2125..2505
                     /locus_tag="VLF16_08815"
     CDS             2125..2505
                     /locus_tag="VLF16_08815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71021.1"
                     /translation="MLFFGTFLLAFVLGGLLIGGVIRTVEWAREVPSPYAAIDDREFS
                     RCLRGADDLHQAALQWVRLENSLGMAGEDAYRTWLRLARTFEKRCGAANWPHQAVPEI
                     PADWLPHLGLRREDWPAQVPAHPD"
BASE COUNT          430 a          982 c          842 g          385 t
ORIGIN      
        1 cgtcgagatc cgccgcgacc gtttcggcga ctggcaggtg gtgccgggcc gcttcaaccg
       61 ccgcgtcacc gccgccacgc cgatgcagat ggtcggcccg gcccgcggcc atgccctgct
      121 gcgcacccgc cacagccccg acggcaccgc cagccgcggc acccagaaca actgcgccaa
      181 cggcttcacg ccctggggca cctacctgac ctgcgaggag aactgggccg gctacttcgc
      241 cacgcgcgac accgccctgc cgcgcgaact gcagcgctac ggcctgcgca gcagcagccg
      301 cttcggctgg gataccctgc ccggcgacga attccagcgc ttcgacgcca cccgcaaggc
      361 cggcgacgcc agcggcgact atcgcaacga gcccaaccac ttcggctgga tcgtcgagat
      421 cgacccgttt gacccgaact ccacgccggt caagcacagc gccctcggcc gcttcgccca
      481 cgagggcctg gtcttcgcgc cgacccgccc gggccggccg ctggtgtgct actccggcga
      541 cgactcgcag aacgagtaca tctacaagta cgtcagccgc ggcaagtacc tgccgctgct
      601 gcgccacccc agccgcctgc tcgacgacgg cacgctctac gtcgcccgct tcaacccgga
      661 tggtcgtggc gaatggctgg ccctggacct gcgcgaccgc gccttccgcg ccgcctgccg
      721 caaggccggg gtgagcttcg ccgaccaggg cgaagtgctg atcaacaccc gcctggccgc
      781 cgacatcgtc ggcgccacca agatggaccg tcccgagtgg ggcgccgtca acccggacaa
      841 cggcgaggtc ttcttcaccc tcaccaacaa cagctcgcgc accgaggcgg acgccgccaa
      901 tccgcgcgcg gccaacccgt acgggcacat catccgctgg cgcgagaacc gtcgcgacca
      961 cgccggccgg cagttccgct gggacatctt cctgctcgcc ggcccgcagg gcgacagccg
     1021 cagcccgaac ggcgcggcgc tcgacgagca caacatcctg gccagcccgg acggcctgtg
     1081 gttcgaccca gacggccgcc tgtggatcca gaccgacatg agtggcagcc agctggccag
     1141 cggcccgttc ggccacaacc agatgctggt ggccgacccg cgcagcggcc agatcaagcg
     1201 ctttctggtc ggcccgttcg gtgccgaggt caccggcatc agcgccacgc cggacttccg
     1261 cacgctgttc gtcaacatcc agcacccggg cgaaggctcc accgccagca acctgctcag
     1321 cacctggccg gacggccccg gccggcgccc gcgctcggcc accgtggtgg tcacccgcga
     1381 ggacggcaag cgcttgatgt aacgccgctc tgcaccaacg aaacccgggc tcgcccgggt
     1441 tttctgtttg aagacggaca tgtctcgctt ctgcagcctg gcagctcgag gtcgtagccc
     1501 ggatgcaatc cgggaaagcc ggcaactccg cccccggatt gcatccgggc tacttcccct
     1561 tggccgccgc acagggtaaa acgcgcctcc gatcggctac cctgtagccg aatccgcttt
     1621 gccaggagac gcaccgtgga agaagtcatc gatcagctgc gcgaactcaa cgagccggta
     1681 ccggtgccgc tggagctgcc ggaagaggaa accctggtgg agattcagga gcagatcctc
     1741 atccacctgc cgttcgaact gcgcgaatac ctgctcaagg tcagcgacgt ggtctacggc
     1801 cgcctggagc cggtcaccgc cagcgacccg cactcgcaca cctacctgcc ggaagtcgcc
     1861 tcggtggcct gggaccgcgg cctgccgcgc gacctggtgc cgctgtgcca ggatggccgc
     1921 gactattacg cggtggacgt ggaaggcacc gtctggctgt gggacggcga cgagggcgag
     1981 ctgaccgacg agagctggga ctcggtctgg cactggtgcc gcgacgtctg gctggagagc
     2041 tgagccctgt ccctccgccc gaggggtggt gtcctcgaca acctgccacc ccaggtcctg
     2101 cagcgcctgg tccaggtggc gatcatgctc ttcttcggca ctttcctgct ggccttcgtg
     2161 cttggcgggc tgttgatcgg cggagtgatc cgcacggtgg aatgggcgcg cgaagtgccc
     2221 tcgccctatg ccgccatcga cgacagagag ttcagccgct gcctgcgcgg tgccgacgac
     2281 ctgcaccagg ccgccctgca atgggtgcgc ctggagaaca gcctgggcat ggctggcgag
     2341 gacgcctatc gcacctggct gcgtctggcg cgaacgttcg agaaacgctg cggggctgcc
     2401 aactggccgc accaggcggt accagaaata cctgcggact ggctgccaca cctgggcctg
     2461 cgccgcgagg actggcctgc gcaggtgccg gcacatccgg actgagacgt ttggtgccag
     2521 ggctcacttg gtcttaactg gagtcacctg cctccaggaa ccggaacatg gccagcatca
     2581 agacccgcct gctcgtcggc ggcctcgcca ctctcgccgt cggcggcggc ctgtggctc
//
LOCUS       DATIHC010000538         2052 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8560, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000538 DATIHC010000000
VERSION     DATIHC010000538.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8560"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1617)
                     /gene="hrpA"
                     /locus_tag="VLF16_08820"
     CDS             complement(<1..1617)
                     /gene="hrpA"
                     /locus_tag="VLF16_08820"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HSX71022.1"
                     /translation="MTDDHASLLKNLDQAMQADRHRLRRQLQELQRQPDEAKLAQWLE
                     RFQASVAKVEARRRSIPTIRYDDALPIAAKRDEIKKALQEHQVLVIAGETGSGKTTQL
                     PKICLELGRGVHGLIGHTQPRRLAARSVASRVAEEVGTPLGELVGYQVRFEDQSKDST
                     LIKLMTDGILLAETQHDRFLEKYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKLI
                     ITSATIDLERFSKHFNDAPIIEVSGRTYPVDTWYRPLAAEVDEEGESLLDDLTVDQGI
                     LAALDEIAAFEKAEGKRPGDVLVFLPGEREIRDAAEVLRKANLRFTEVLPLYARLTPA
                     EQQKIFAPMAGRKIVLATNVAETSLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAV
                     SQASANQRKGRCGRVEPGVCIRLYSEEDFLGRPAFTDPEILRTNLAAVILQMLHLRLG
                     GIEDFPFIEPPDGKAISDGFTLLQELSAVNRESQLTPIGRQLARLPIDPRLGRMVLEA
                     AKLGSLDEILIVASALSVQDPRERPMERQQA"
     gene            1839..>2052
                     /locus_tag="VLF16_08825"
     CDS             1839..>2052
                     /locus_tag="VLF16_08825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSX71023.1"
                     /translation="MKNWILDLSLKYKFWAVNLVAFVTTLLLVLFAMQQEQQGRAGAY
                     AVCVFVLMLLLLGASQLLIRFILSHLN"
BASE COUNT          308 a          656 c          713 g          375 t
ORIGIN      
        1 ggcctgctgg cgctccatcg gccgctcgcg cgggtcctgc acggacagcg ccgaggcaac
       61 gatcagaatc tcgtccaggc tgccgagctt ggccgcttcc agcaccatgc ggcccaggcg
      121 cgggtcgatg ggcaggcgtg ccagctgacg gccgatgggc gtgagctggc tctcgcggtt
      181 gaccgccgag agctcctgca acagggtgaa gccgtcgctg atggccttgc catctggcgg
      241 ctcgatgaag gggaagtcct cgatgccgcc caggcgcaga tgcagcatct gcaggatcac
      301 cgcggccagg ttggtgcgca ggatttccgg atcggtgaat gcggggcggc cgaggaaatc
      361 ctcctcgctg tacaggcgga tgcagacgcc cggctcgacc cggccgcagc ggcccttgcg
      421 ctgattggcg ctggcctggg atacggcctc gatgggcagg cgctgcacct tggcgcggta
      481 gctgtagcgg ctgatccgcg cggtaccaga gtcgatcaca taacggatgc cgggcacagt
      541 cagcgaggtt tcggcgacgt tggtggccag cacgatcttg cgtccggcca tgggcgcgaa
      601 gatcttctgc tgctcggccg gggtcagccg cgcgtacagc ggcagcacct cggtgaagcg
      661 caggttggcc ttgcgcagca cctcggcggc gtcacgaatc tcgcgctcgc cggggaggaa
      721 caccagcacg tcgccggggc gcttgccctc ggccttctca aaggcggcga tctcgtccag
      781 cgcggcgagg atgccctggt cgacggtgag atcatccagc aggctctcgc cctcctcgtc
      841 cacctcggcg gccagcgggc ggtaccaggt gtccaccggg taggtgcggc cggagacctc
      901 gatgatcggc gcgtcgttga aatgcttgct gaagcgctcc aggtcgatgg tcgccgaggt
      961 gatgatcagc ttgaggtcgg ggcggcgcgg cagcagggtc ttcaggtagc cgagcaggaa
     1021 gtcgatgttc agcgaacgct cgtgggcctc gtcgacgatg atggtgtcgt acttttccag
     1081 aaagcggtcg tgctgggtct cagcgagcag gatgccgtcg gtcatcagct tgatcagcgt
     1141 gctgtccttg ctctgatcct cgaagcgcac ctggtagccg accagctcac ccagcggcgt
     1201 gccgacttcc tcggccacgc ggctggcgac gctgcgcgcg gccaggcggc gtggctgggt
     1261 gtggccgatc agaccatgca cgccgcggcc cagctccagg cagatcttcg gcagctgggt
     1321 ggtcttgccc gagccggtct cgccggcgat caccagcacc tggtgctcct gcagcgcttt
     1381 cttgatctcg tcgcgcttgg cggcgatcgg cagcgcgtcg tcgtagcgga tggtcgggat
     1441 gctgcgcctg cgcgcctcga ccttggcgac cgaggcctgg aagcgctcca gccattgggc
     1501 cagcttggcc tcgtccggct gcctttgcag ctcctgcaac tggcggcgca ggcggtgacg
     1561 gtcggcctgc atggcctggt cgaggttctt cagcagggag gcgtggtcgt cggtcatggg
     1621 caagaatgca tactgcgagc accgctcggc cgtggtggct gcggtggtgg cgaatcgggc
     1681 cgcgattgtc gcagcccagc cttggcttgc ccagcctgga accatgacga acggcaggcg
     1741 ccagaaaccg tctggttgat cgggatcaac gccgccgtag cgtgccaccg gcacgatatg
     1801 gccaaatgcc agaacacttg cgtgcagacc ctacctatat gaagaactgg atcctcgacc
     1861 tctcgctgaa gtacaaattc tgggccgtca atctggtggc cttcgtgacc accctgctgc
     1921 tggtgctgtt cgccatgcag caggaacagc agggccgcgc cggcgcctac gccgtctgcg
     1981 tgttcgtgct gatgctgttg ctgctgggcg cctcgcagct gctgatccgc ttcatcctca
     2041 gccatctcaa cc
//
LOCUS       DATIHC010000539         4579 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_830, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000539 DATIHC010000000
VERSION     DATIHC010000539.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4579
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_830"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(70..540)
                     /locus_tag="VLF16_08830"
     CDS             complement(70..540)
                     /locus_tag="VLF16_08830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017522074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreAB"
                     /protein_id="HSX71024.1"
                     /translation="MDKHLLQQLVCQRLEADLDLLVAAAETARQAATHEESKAENKYD
                     TRGLEASYLAAGQSRRVEEIRRALAAWRTLQMRPYDDDQGIQLGALIHLADAQDRRQC
                     LLLGPDGAGLKLQLAGQEVLLITAQAPLGQQLLGRGPGDEVKLGQAPWRIVGVA"
     gene            complement(573..1037)
                     /locus_tag="VLF16_08835"
     CDS             complement(573..1037)
                     /locus_tag="VLF16_08835"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSX71025.1"
                     /translation="MTLSWHTKHHRELDTHELYALLELRTRVFVVEQNCPYQEVDGQD
                     LVGDTCHLLAWRDGQLLAYLRLLDPARHDGEVVIGRVVIAPEARGDGLGHTLMEHALQ
                     ACAARWPGLPVYLSAQAHLQRYYGRYGFVAVTEEYLEDDIPHIGMRRGPPGC"
     gene            complement(1075..1569)
                     /locus_tag="VLF16_08840"
     CDS             complement(1075..1569)
                     /locus_tag="VLF16_08840"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HSX71026.1"
                     /translation="MHATLDALAAFPDQLAVHFASFPAPHRHWAPTCWDGVPSEPFTA
                     LEQLCHVLDVEVEGYQRRIRRTLEEDNPLLVSLDGEAMARERRYAEADAEAVLADLRH
                     ARRETLALIGSITPEQFRRRARFEGYGDTTLRGLVHYLCSHDQQHLAGLQWLLGKIEA
                     RAGL"
     gene            complement(1661..3436)
                     /locus_tag="VLF16_08845"
     CDS             complement(1661..3436)
                     /locus_tag="VLF16_08845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011920707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7TM diverse intracellular signaling
                     domain-containing protein"
                     /protein_id="HSX71027.1"
                     /translation="MRSALSSLLFLFCLLATPGWAATLQLTDHTDALPLYGVADYLAD
                     PEGRLQLDELIAHPERFASSATRRDLGFGYVTGAIWLRVEVESTASHPGRWRLEVDYP
                     SLDRVQLFDVGRDGIRLGHAGDMVVYDQRSVGNRTPVFDLHLQPGERRTLYLRASSSG
                     SMTLAASLYSLAEHEQHSIRGYLAQAIYLGALLALGSYNLLLFIALRERPFIYYVLFV
                     STFCIGLLGLNGLGAQLLWPGAGWWTNRALPFGISAAGAIALLFARSFLDTRRWLPRW
                     DRFLGLWFAVVFSCALSTLLLSVPLALKAMSIFGVSVCAVLLSVAFVSVRRRVPGAGF
                     FALAWTMLLCGAALMALRNFALIPSNFFTLHAMQIGSMLEMILLSFALAARFNAHKRQ
                     REASLQAQERQLEKRVAERTEELAAANLRLQALALQDPLTGLANRNALQQHLEMALRR
                     SLRSGEPLAVMLIDLDGFKPINDQHGHALGDQVLEQVAQRLQNCARDCDLPARLGGDE
                     FVLVCEALASDEAAREVAERILVRLGQPIATPAGEVRVGASIGIALSRGEGSPTQLIR
                     QADMAMYQAKAEGRNRVRIDASPSA"
     gene            3609..4493
                     /locus_tag="VLF16_08850"
     CDS             3609..4493
                     /locus_tag="VLF16_08850"
                     /inference="COORDINATES: protein motif:HMM:NF028434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase
                     domain-containing protein"
                     /protein_id="HSX71028.1"
                     /translation="MPAPCVLTPLPRRDYDPSEAALAWRALRRAGYRVCFATPDGRPA
                     EPDPLMLSGEGLDAWGLVPGLRRLQLLGLLLRARHEARLACAEMLRDPDYLQPLRHER
                     LRVEDFAGLVLPGGHWARGMREYLESETLQSFVADFFAADKPVAAVCHGVLLAARSKG
                     AEGRSVLHGRKTTGLTWKMEKTAWDLTRFYGRWWQGDYYRTYAEAADEPAGHMSVQGE
                     VGRLLASPADFLDVPKDAPDFWRKTSGLHRDTPSDSRPAWVVRDGNYVSGRWPGDMHE
                     LMRRYIELLPAVQVGVEP"
BASE COUNT          665 a         1509 c         1740 g          665 t
ORIGIN      
        1 gcgctggtcg cctcgggaga gctggcgcgc ctggcgacgc cgctcggggt caacgtgccc
       61 tgagcgggct cacgccacgc cgacgatccg ccagggcgcc tggcccagct tcacctcgtc
      121 acccggcccg cggcccagca actgctggcc gagcggcgcc tgggcggtga tcagcaacac
      181 ctcctggccg gcgagttgca gcttgaggcc ggcaccgtcc gggcccagca gcaggcactg
      241 gcggcgatcc tgcgcgtcgg ccaggtggat cagtgcgccg agctggatgc cctggtcgtc
      301 gtcgtagggg cgcatctgca gcgtgcgcca ggcggccagc gcgcggcgga tctcctcgac
      361 ccgacgcgac tggccggcgg cgaggtagga agcctccagg ccgcgggtgt cgtacttgtt
      421 ctcggccttg ctctcttcgt gggtcgccgc ctggcgcgcg gtctccgcgg cggcgaccag
      481 caggtcgagg tcggcttcga ggcgctggca gaccagctgt tgcagcagat gcttgtccat
      541 gatgcgggtc ggcgtgtggc ggggcgggca ggttagcagc ccggcgggcc gcggcgcatg
      601 ccgatgtgcg ggatgtcgtc ttccaggtat tcctcggtga cggcgacgaa accgtagcgg
      661 ccgtagtagc gctgcaggtg cgcctgggcc gagaggtaca ccggcagccc gggccagcgc
      721 gcggcacagg cctgcagggc gtgctccatc agcgtatgac cgaggccatc gccgcgcgcc
      781 tcgggggcga tcaccacgcg gccgatgacc acctcgccgt cgtggcgggc cgggtcgagc
      841 aggcgcagat aggccagcag ttgcccgtcg cgccaggcca ggaggtgaca ggtgtcgccg
      901 accaggtcct ggccatccac ttcctggtag gggcagttct gctcgaccac gaagacgcgg
      961 gtacgcagtt cgagcagggc gtagagctcg tgggtgtcga gctcgcgatg gtgcttggtg
     1021 tgccagctga gggtcatggg cgtcgcggtc gtgtccggtg gggctgcgat tctgtcacag
     1081 gccggcccgc gcctcgatct tgccgagcag ccactgcagg ccggccaggt gctgctggtc
     1141 atggctgcac aggtaatgca ccaggccgcg cagggtcgta tcgccatagc cttcgaagcg
     1201 ggcgcggcgg cggaactgct ccggcgtgat cgagccgatc agcgccaggg tctcgcggcg
     1261 cgcgtggcgc aagtcggcca gcacggcctc ggcatccgcc tcggcgtagc ggcgctcgcg
     1321 ggccatggcc tcgccgtcca gcgaaaccag cagcgggttg tcttcctcga gggtgcggcg
     1381 gatgcgtcgc tggtagccct cgacctccac gtcgagcaca tggcagagct gctcgagtgc
     1441 cgtgaagggt tcgctgggca cgccgtccca gcaggtcggc gcccagtgcc gatgcggggc
     1501 ggggaagctg gcgaagtgga cggccagctg atcgggaaag gcggcgaggg catcgagtgt
     1561 ggcgtgcatg ccggagctcc tgcggacgga atcggcatgc tggcacgcgc cgcgccggct
     1621 ggcgcgatac agatggcggt taaaacgcct cgtccgtctg ctaggcgctc ggcgacgcgt
     1681 cgatgcgtac ccggttgcgg ccctcggcct tggcctggta catggccatg tcggcctggc
     1741 ggatcagctg ggtggggctg ccttcgccgc ggctcagggc gatgccgatg ctggcgccga
     1801 cgcgcacctc gcccgctggc gtggcgatgg gctggccgag ccgcacgagg atgcgttcgg
     1861 ccacctcgcg ggcggcctcg tcggaggcga gcgcctcgca caccagcacg aattcgtcgc
     1921 cacccaggcg ggccggcagg tcacagtcgc gggcgcagtt ctgcaggcgc tgcgccacct
     1981 gctccagcac ctggtcgccg agggcatggc cgtgctggtc gttgatcggc ttgaagccgt
     2041 ccaggtcgat cagcatcacc gccagcggct cgccgctgcg cagggagcga cgcagggcca
     2101 tttccagatg ctgctgcagg gcgttgcggt tggcgaggcc ggtcaacggg tcctgcaggg
     2161 ccagggcctg caggcgcagg ttggcggcgg ccagctcctc ggtgcgttcg gccacgcgct
     2221 tttccagctg acgttcctga gcctgcaggc tcgcctcgcg ctggcgcttg tgggcgttga
     2281 agcgggcggc gagggcaaag gacagcagga tcatctccag catcgagccg atctgcatgg
     2341 cgtgcagggt gaagaagttc gacgggatca gggcgaagtt gcgcagggcc atcagcgccg
     2401 cgccgcacag cagcatggtc caggccaggg cgaagaaacc ggcgcccggc acgcgccggc
     2461 gtacgctgac gaaggccacg ctgagcagca ccgcgcagac gctgacgccg aagatcgaca
     2521 tggccttcag cgccagcggc accgacagca gcagggtcga cagggcgcag ctgaacacca
     2581 cggcgaacca caggccgagg aaccggtccc agcgcggcag ccagcggcgg gtgtcgagga
     2641 agctgcgggc gaacagcagg gcgatggcgc cggcggcgct gatgccgaac ggcagcgcgc
     2701 ggttggtcca ccagcccgcg ccgggccaga gcagctgggc gccgaggccg ttgaggccga
     2761 gcaggccgat acagaaggtc gagacgaaca gcacgtagta gatgaacggc cgctcgcgca
     2821 gggcgatgaa cagcagcagg ttgtagctgc ccagcgccag cagggcgccg aggtagatgg
     2881 cctgggccag gtagccgcgg atgctgtgct gctcgtgctc ggccaggctg tagaggctgg
     2941 cggcgagcgt catgctgccg gaggagctgg cgcgcagata gagggtgcgg cgttcgcccg
     3001 gctgcaggtg caggtcgaac acgggggtgc ggttgccgac gctgcgctgg tcgtacacca
     3061 ccatgtcgcc ggcgtggccc aggcggatgc cgtcgcggcc cacgtcgaac agctgcaccc
     3121 ggtccagcga gggatagtcg acttccagcc gccagcgccc cggatggctg gccgtcgact
     3181 ccacctccac gcgcagccag atggcgccgg tgacgtagcc gaagcccagg tcgcggcgcg
     3241 tggcgctgga ggcgaagcgt tcggggtggg cgatcagctc gtccagttgc agacgacctt
     3301 cggggtcggc caggtagtcg gccacgccgt acagcggcaa ggcgtcggtg tggtccgtca
     3361 gctgcagggt cgcggcccag ccgggcgtgg ccagcaggca gaacaggaac agcagcgaag
     3421 acagggcgga gcgcatcggg ggtccatggc ggtgagccgg tggccaatag tggcagagcg
     3481 ccacagcgtg cgccaagccg gatgtgatca caactggcag cgccggcgcg gcgcgctgtc
     3541 gcgatcggcc tgctcgcggt ggctgggggc tgctatggtc tgtgcccatc tttcctcgag
     3601 atttcgccat gcccgcaccc tgcgtcctga cgcccctgcc gcgccgcgac tacgacccca
     3661 gcgaggccgc cctggcctgg cgcgcgttgc gccgggccgg ctaccgggtg tgcttcgcca
     3721 cgccggatgg ccggcccgcc gagccggacc cgctgatgct cagcggcgaa ggcctggatg
     3781 cctgggggct ggtgccgggg ctgcgtcggc tccagctgct cggcctgctg ctgcgcgccc
     3841 gccacgaagc ccgcctggcc tgcgccgaga tgctgcgcga tcccgactat ctccagccgt
     3901 tgcgtcacga gcgcctgcgc gtcgaggatt tcgccggcct ggtgctgccc ggcggccact
     3961 gggcccgggg catgcgcgaa tacctggaga gcgagacgct gcagtccttc gtcgcggact
     4021 tcttcgccgc cgacaagccg gttgcggcgg tctgccacgg cgtgctgctg gccgcgcgca
     4081 gcaagggcgc ggaaggtcgc tcggtgctgc acgggcgcaa gaccaccggc ctgacttgga
     4141 agatggagaa gaccgcctgg gacctgaccc gcttctacgg ccgctggtgg cagggcgact
     4201 actaccgcac ctacgccgag gccgcggacg agccggccgg gcacatgagc gtgcagggcg
     4261 aggtgggacg cctgctggcc agcccggcgg attttctcga cgtgccgaag gacgctcccg
     4321 acttctggcg caagaccagc ggcctgcacc gcgacacgcc gagcgacagc cggccggcct
     4381 gggtggtgcg cgacggcaac tatgtgtccg ggcgctggcc gggggacatg cacgagctga
     4441 tgcggcgtta tatcgagctg ttgccggcgg tccaggtagg cgtagagccg tagcccggat
     4501 gtaatccggg aatccaggcg actccgcaca tgctttatcg agctgttgcc cgtggcgtag
     4561 atcggcagcg cttggtgcg
//
LOCUS       DATIHC010000540         1678 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43505, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000540 DATIHC010000000
VERSION     DATIHC010000540.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1678
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43505"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1135)
                     /locus_tag="VLF16_08855"
     CDS             complement(<1..1135)
                     /locus_tag="VLF16_08855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase"
                     /protein_id="HSX71029.1"
                     /translation="MFESAELGHKIDEADYEKELPALREALLEAQFELQQQKRFPVII
                     LINGIEGAGKGETVKLLNEWMDPRLIQVNTFDVQTDEELARPPAWRFWRQLPPKGRIG
                     IFFGNWYSQMIQGRVHGHFKDAVLDQAIDRALALEEMLCDEGALIFKFWFHLSKKRMK
                     ARLKELQDDPQRAWRLSPLDWQQSKTYDKFVHHGERVLRRSSRDFAPWYVVEGSDECY
                     RSLTVGRILLDGLQAALKDQAPRPHRAHTAPLVASLDSRTLLSSLDLGQHLEKLDYRQ
                     ALDAEQARLATLMRDKRMRRHALVAVFEGNDAAGKGGAIRRVAAALDPRQYRIVPIAA
                     PTEEERAQPYLWRFWRHIPARGKFTVFDRSWYGRVLVERVEGFC"
     gene            1229..>1678
                     /locus_tag="VLF16_08860"
     CDS             1229..>1678
                     /locus_tag="VLF16_08860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HSX71030.1"
                     /translation="MSDSPHAQLDWDDQGQPLSRQFGDVYFSREDALGETRHVFLDGS
                     QLAQRCAALTADGRLVIGETGFGTGLNFLCAWQLFDRLAPAGARLHFVSVEKYPLAAA
                     DLRRALALWPELAPWSAPLLEQYVAIHPGFQRLVLAGGRVILTLLIGD"
BASE COUNT          233 a          599 c          548 g          298 t
ORIGIN      
        1 cgcaaaagcc ctccacccgc tccaccaata cccggccgta ccaggagcgg tcgaacacgg
       61 tgaatttgcc gcgtgccggg atgtgccgcc agaagcgcca cagatagggc tgagcacgct
      121 cttcctcggt gggcgcggcg atcggcacga tgcggtactg gcgcgggtcc agcgccgccg
      181 ccacccggcg gatggcgccg cccttgccgg ccgcgtcgtt gccttcgaac accgccacca
      241 gggcgtgccg gcgcatgcgc ttgtcgcgca tcagggtggc caggcgcgcc tgttcggcat
      301 cgagcgcctg gcggtagtcg agcttttcaa gatgctggcc gagatccagg ctgctgagca
      361 gggtgcgact gtccaggctg gccaccagcg gcgcggtatg cgcccggtgc gggcgcggcg
      421 cctggtcctt gagcgcggcc tgcaggccgt cgagcaggat gcgccccacg gtcaggctgc
      481 ggtagcactc gtcgctgccc tccaccacgt accagggcgc gaagtcgcgg ctgctgcggc
      541 gcagcacgcg ctcgccgtgg tgcacgaact tgtcgtaggt cttcgactgc tgccagtcca
      601 gcgggctgag gcgccaggcg cgttgcgggt cgtcctgcag ctccttgagc cgcgccttca
      661 tgcgcttctt ggacaggtgg aaccagaact tgaagatcag cgcgccctcg tcgcagagca
      721 tctcctccag cgccagcgcc cggtcgatcg cctgatccag caccgcgtcc ttgaaatgcc
      781 cgtgcacgcg gccctggatc atctggctgt accagttgcc gaagaagatg ccgatgcggc
      841 ccttgggcgg cagctggcgc cagaagcgcc aggccggcgg ccgcgccagt tcctcgtcgg
      901 tttgcacatc gaaggtgttg acctgaatca gccgcgggtc catccactcg ttgagcagct
      961 tgaccgtctc gcccttgccg gcgccctcga tgccgttgat caggatgatc accgggaagc
     1021 gcttctgctg ctgcagctcg aactgcgcct ccagcagcgc ctcgcgcagt gcgggcagct
     1081 ccttctcgta atcggcctcg tcgatcttgt gccccagttc ggcggattcg aacatgctca
     1141 cctccgtgcg tcgatttgcc cagcctagcg gatcaccccg gtttttggca tgccgctaca
     1201 atgccgcacc ttccttttcg gtgccccgat gtccgactcc cctcacgccc agctcgactg
     1261 ggacgaccaa ggccagccgc tgtcgcgcca gttcggcgac gtgtacttct cccgcgagga
     1321 tgcgctgggc gagacgcgcc acgtgttcct cgacggcagc cagctggcgc aacgctgcgc
     1381 cgccctgacc gccgacggcc gcctggtgat cggtgaaacc ggtttcggca ccggactgaa
     1441 ttttctctgc gcctggcaac tgttcgatcg gctcgccccg gccggcgccc ggctgcattt
     1501 cgtcagcgtc gagaagtacc cgctggcggc ggccgacctg cgacgcgccc tcgccctgtg
     1561 gccggaactg gcgccctggt cggcgccgct gctggagcag tacgtggcca tccacccggg
     1621 cttccagcgc ctggtgctgg ccggcggacg ggtgatcctg accctgctga tcggcgat
//
LOCUS       DATIHC010000541         6718 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_20164, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000541 DATIHC010000000
VERSION     DATIHC010000541.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6718
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20164"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1869)
                     /locus_tag="VLF16_08865"
     CDS             complement(<1..1869)
                     /locus_tag="VLF16_08865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein LysM"
                     /protein_id="HSX71031.1"
                     /translation="MARIRNLFLILASTSTLYSGLVSALGLGDIDLHSALNQPLEARI
                     ELYQVGDMGSDDLKVRLASAEDFERAGVERLFFLSDLRFTPVLGGGRPHIRVTSAKPV
                     REPYLNFIVELVRPGGSLLREYTVLIDPPGMAYAPVSEAEPAFEAAAPATRNQAPAAA
                     QRPLPAASRGERYRVQRGDSLWTIAGRLQATGATTDRETLMADIHALNPAAFGGGDRN
                     RLLAEVELLLPDSVAPTAEPVAAEVPTAPNVSADAAQVEAEQRQVDSELAQVTEQNQA
                     LQGSLLQLQSQLEQLQAQMAEKDRQLQQIQDELRQRQEAPPAPVAEPAAAAPAQQPAP
                     VLEAEPTDRWYPWLFGALLVLLLLAALLLARRRRPARQAEPPTPAAEPEVRAAAPPAR
                     LPELVVEEPAMPAVAPGLAPPRLPGSSSDPLEGANIYIAYGRFAEAAKVLHRGIDQQP
                     ARLELRLRLLEVLGELGEGAAFAEQEHELRERGANPAQLEQIAARYAHLERPAEEAPL
                     ADAVLQLDETEPPMLAQDDFQLNLDDLSLDADWDLVTPFKPERAAKARPSPSDEVDPH
                     FHSDLQRLPEVLEMDELPQEQALDDELSEAFLRETGGDLDELAGNREHLVKLNLALA"
     gene            complement(2102..2536)
                     /locus_tag="VLF16_08870"
     CDS             complement(2102..2536)
                     /locus_tag="VLF16_08870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004371158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HSX71032.1"
                     /translation="MHNFAHHSFGMQLAQLSRAWRAELDRRLSGLGLSQARWLVLLHL
                     ALLKEAPTQRELAQTVGVEGPTLARLLDGLEAQELVRRIAVPEDRRAKKVVLADKARP
                     LIEQIESIAQQLRNELFAGVSEEEQRLCQDIHARILGNLEKN"
     gene            complement(2655..3659)
                     /locus_tag="VLF16_08875"
     CDS             complement(2655..3659)
                     /locus_tag="VLF16_08875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2804 domain-containing protein"
                     /protein_id="HSX71033.1"
                     /translation="MERLIQADGQPYYGIFPTAPGEVNWRDFDFRSPMGRRLGALAKW
                     RRFHQFQYFGIVSDELIGGCALADISLLTAGFVYLFHPASGRMVEREFKRPLGHGTAF
                     SQRPNEGVCELRSGANLLRLSNHGLDKQLLVELDDGTRIEASFTEQQFQPMCLCTPTA
                     VNGWVYAQKVAGVRCRGSVRSALGDFDLQALDAFAHHDWSAGYMRPETFWNWACLSGQ
                     VGGTRVGLNLSCGVNETSFSENCYWLDGELLPVGGVHFQFDRDDPLKPWRIVSGDGQV
                     ELSFRGHGLHREHLNLGLLASNFKQVFGCFQGTLRPPGRAPLVIDSLWGFVEDQYVKW
                     "
     gene            complement(3744..4904)
                     /locus_tag="VLF16_08880"
     CDS             complement(3744..4904)
                     /locus_tag="VLF16_08880"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003147954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HSX71034.1"
                     /translation="MSLHSDWLADVRPNPYAEQLSRGYRLLRFAPGLELEYRAYMLRD
                     TLELKRVAVIFALLVWLSFAGVDIWMIEGPLLAALLAIRVGVALLLVVCGRLILSRRH
                     PHLAAPLGIACIGTMGLGAAVIIALAHGQDPSFPYEGLLLVCIAAYFLVGLRLVEAAV
                     TSFLVLLAYGVLEWLGGLAPERLFNNLLFLLAGNLIGAVGCYQLELKSREHFLVDGLL
                     RVLADQDGLTGLHNRRSFYRELGRLWRQAQREERSLALLLCDVDHFKAYNDRYGHQAG
                     DRALQQVGEVLLQAARRPLDMAARLGGEEFAVLLYDIAPDEARQRAEALRQSLEARAI
                     EHAGSSAAAVLTLSVGLCCVRPTAQTSVDSLFEHADRALYEAKAFGRNQVVT"
     gene            complement(5010..>6718)
                     /locus_tag="VLF16_08885"
     CDS             complement(5010..>6718)
                     /locus_tag="VLF16_08885"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016980791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="RecQ family ATP-dependent DNA helicase"
                     /protein_id="HSX71035.1"
                     /translation="VSQWGHDFRPEYLQLGQLAELFPGVPRIALTATADMRTREEIAQ
                     RLHLEQAERFLSSFDRPNIFYRIQPKDQPRKQLLAFLAARKGDAGIVYCLSRKKVEEV
                     ADFLSAQGFPALPYHAGLPNELRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFVCH
                     MDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVIFLKQMLSNSEGDERHKRIEQHK
                     LDAMLALCEETRCRRQALLAYFDEVLEKPCGQCDSCVDNVQTWDATEPARQALSAIYR
                     SGQRYGVGHLVDILLGRENDKIRASGHQHLPVFGIGKALAEAEWRTLFRQLVARGLAD
                     VDLDGYGGLRLTDACRPLLRGEVKLELRRDLKPQQAAKASGSSASQLVRGEEREQWEA
                     LRALRRKLAEEHSVPPYVIFPDSTLLEMLRSQPRTLSDMAQVSGVGARKLERYGEAFL
                     EVLNGGESAEAPKVVTDLRHELVSLARAGMTPAQIASQLNCGEKSVYNLLAEAIGRQQ
                     LSLEQALDLPEDLLGEIQDAFLDGEGELPPVAAVAEQFAGQVPEGVLHCVRAALQAEF
                     EV"
BASE COUNT         1086 a         2326 c         2294 g         1012 t
ORIGIN      
        1 ggccagcgcc aggttgagct tgaccaggtg ctcgcggttg ccggccagct cgtcgaggtc
       61 gccgccggtc tcgcgcagga aggcctcgga aagctcgtcg tccagcgcct gctcctgcgg
      121 cagctcgtcc atctccagca cctccggcag gcgctgcagg tccgaatgga agtgcgggtc
      181 gacctcatcg ctcgggcttg gccgcgcctt ggccgcgcgt tcgggcttga agggcgtgac
      241 cagatcccag tccgcatcca gcgacaggtc gtcgaggttg agctggaaat cgtcctgggc
      301 caacatcggc ggctctgtct cgtccagttg cagcacggca tcggccagcg gcgcttcctc
      361 cgccgggcgc tccagatggg cgtagcgggc agcgatctgc tccagctgcg ccggattggc
      421 gccgcgctcg cgcagttcgt gttcctgctc ggcgaaggcg gcgccctcac ccaactcgcc
      481 cagcacctcg agcaggcgca ggcgcagctc gagccgcgcc ggctgttggt cgatgccgcg
      541 gtgcagcacc ttggccgcct cggcgaagcg accgtaggcg atatagatat tggcgccctc
      601 caggggatcg gaagagctgc ccggcagccg cggcggcgcc agacccggcg cgaccgctgg
      661 catcgccggc tcctcgacca caagctcggg cagccgcgcg ggaggggctg ccgcgcgcac
      721 ctcgggctcg gccgcgggcg tgggcggctc ggcctggcgc gccggccggc ggcggcgagc
      781 aagcaacagg gccgcgagca gcagcaggac caacagcgca ccgaacaacc atggatacca
      841 gcgatcagtc ggctcagcct cgagaaccgg agccggctgc tgtgcaggcg cggccgctgc
      901 gggctcggcc accggcgccg gcggcgcctc ctggcgctgg cgcagctcgt cctggatctg
      961 ctgcagctgg cgatccttct ccgccatctg cgcctgcagc tgttccagct ggctctgcag
     1021 ctgcaggagg ctgccttgca gcgcctggtt ctgctcggtg acctgggcca gttcgctgtc
     1081 cacctggcgc tgctcggcct cgacctgcgc cgcatcggcg ctcacgttcg gcgcggtggg
     1141 tacctcggcg gcgacgggct cggccgtcgg cgccacgcta tccggcagca gcagttcgac
     1201 ctccgcgagc aggcgattgc ggtcgccgcc gccaaacgcg gccgggttga gcgcgtggat
     1261 atcggccatc agcgtttcgc gatcggtcgt ggcgccggtg gcctgcagcc ggccggcgat
     1321 ggtccacagg ctgtcgccac gctgcacccg gtagcgttcg ccgcggctgg ccgcaggcag
     1381 aggccgctgc gctgctgccg gcgcctggtt gcgcgtggcc ggcgccgcgg cctcgaacgc
     1441 cggctcggcc tcagacaccg gtgcgtaggc catgcccggc ggatcgatca gcaccgtgta
     1501 ctcgcgcagc aggctgccgc cgggacgcac cagttcgacg atgaaattca gatagggctc
     1561 gcgcaccggc ttggcggacg tcacccggat gtgcggccgc ccgccaccca gcacgggggt
     1621 gaagcgcagg tcgctgagga agaacaggcg ctccactccg gcacgctcga aatcctcggc
     1681 cgaggccagg cgcaccttga gatcgtcgct gcccatatcg ccgacctggt acagctcgat
     1741 gcgcgcttcc agcggctggt tgagcgccga atgcaggtcg atatccccca ggcccagtgc
     1801 ggacaccagc cccgagtaca gcgtcgaagt cgacgccaga atcaagaaca ggttacggat
     1861 tcgagccatg cggcccctcc cggctcccgg tcacacggcc tggccggctg tccctgggtg
     1921 gaatggttat ccccggcggg cctggcgtgt gggtatgagg tcgcgggcgg ctttccgtcg
     1981 cgacccgcag gcccgcgacg cggacccttg aatcagctta tgaaagagat gccgggaaag
     2041 ccaaacggca gttatgccga atcgcgatta ggcgtggcgc cagcgcaacg gcagaaacgg
     2101 gtcagttctt ttccagattg ccgaggatgc gcgcatggat gtcctggcac agacgctgtt
     2161 cctcctcgct gacgccggcg aacagctcat tgcgcagctg ctgcgcgatg ctctcgatct
     2221 gttcgatcaa cggtcgtgcc ttgtcggcga gcaccacctt cttcgcgcgg cggtcctcgg
     2281 gaacggcgat gcgtcgcacc agctcctggg cttccagccc atcgagcagg cgggccaggg
     2341 tcggcccctc gacaccgacg gtctgcgcca gctcgcgctg ggtcggtgct tccttgagca
     2401 gggccaggtg cagcagcacc agccagcgtg cctgggacag gccgaggccg gagagacgac
     2461 ggtccagctc ggcgcgccag gcgcgggaaa gttgggccag ctgcatgccg aaactgtggt
     2521 gcgcgaagtt gtgcatagaa gactctcgtg ggctcctgcc gcggtccact ccccaagatc
     2581 atgtggacag cagaaaaacc taattattag tcaactaacc ataactcccg aacagcgcgt
     2641 cgccaacccc gctgtcacca tttgacatac tgatcctcga cgaagcccca caggctgtcg
     2701 atcaccaacg gcgcccgccc cggcggccgc agggtgccct ggaagcagcc gaacacctgc
     2761 ttgaagttgc tggccaacag gcccaggttc aggtgttcgc ggtgcaggcc atggccgcgg
     2821 aagctcagtt ccacctggcc atcgcccgac acgatgcgcc agggtttgag cgggtcgtcg
     2881 cggtcgaact ggaaatgcac accgcccacc ggcagcagtt cgccgtccag ccagtagcag
     2941 ttctcgctga agctggtctc gttgaccccg cacgacaggt tgagcccgac ccgcgtgcct
     3001 ccgacctggc cggacaggca ggcccagttc cagaacgtct ccgggcgcat gtagccggcc
     3061 gaccagtcgt ggtgggcgaa ggcgtccagc gcctgcaggt cgaagtcgcc caacgcactg
     3121 cgcacgctgc cgcggcaacg cacgccggcg accttctgcg catagaccca gccgttgacc
     3181 gcggtcggcg tgcagaggca catgggctgg aactgctgct cggtgaagct cgcctcgatg
     3241 cgcgtgccat cgtccagctc caccagcagc tgtttgtcga gcccatggtt gctcagccgc
     3301 agcaggttgg cgccactgcg cagctcgcag acgccctcgt tgggccgctg cgaaaacgcg
     3361 gtgccatggc ccagcggccg cttgaactcg cgctcgacca tgcgcccgct ggccgggtgg
     3421 aacaggtaga cgaagccggc ggtgagcagg ctgatgtcgg ccagcgcgca gccgccgatc
     3481 agctcgtcac tgacgatgcc gaagtactgg aactggtgaa agcgccgcca cttggccagc
     3541 gcgccgaggc gccggcccat gggcgagcgg aagtcgaagt cgcgccagtt cacctcgccc
     3601 ggcgccgtcg gaaagatgcc gtagtagggc tggccgtcgg cctggatcag acgttccatg
     3661 aatccggctc cgcagaaaag cgccgatgct agcagccgca acggcgaccg gcagggacga
     3721 ttcgcgccag cccgggtggc gcttcaggtc acgacctggt tgcggccgaa ggccttggcc
     3781 tcgtacagcg cgcggtcggc atgttcgaac aggctgtcca cgctggtctg cgccgtcggc
     3841 cgcacgcagc acaggccgac cgacagggtc agcaccgccg ccgcggacga gccggcatgc
     3901 tcgatggcgc gagcctcgag gctctggcgc agcgcctcgg cgcgctgcct ggcctcgtcg
     3961 ggcgcgatgt cgtagagcag cacagcgaac tcctcgcctc ccaggcgcgc cgccatgtcc
     4021 agcggacgcc gggcggcctg cagcagcacc tcaccgacct gctgcaacgc gcggtcgccg
     4081 gcctggtggc cgtagcggtc gttgtaggcc ttgaagtggt cgacgtcgca cagcagcagg
     4141 gccagcgaac gctcctcgcg ctgggcctgg cgccacagcc ggcccagctc gcggtagaag
     4201 ctgcgccggt tgtgcagccc ggtgaggccg tcctggtcgg ccagtacacg cagcaggccg
     4261 tccaccaaga aatgctcgcg cgatttcagt tcgagctgat agcagcccac cgcgccgatc
     4321 aggttgccgg ccagcaggaa cagcaggttg ttgaacagcc gctccggcgc caggccgccg
     4381 agccactcga gcaccccgta ggccagcagc accaggaacg aggtgaccgc cgcttccacc
     4441 aggcgcaggc cgaccaggaa gtaggccgcg atgcacacca gcagcagccc ctcgtagggg
     4501 aacgacgggt cctgcccgtg ggccagagca atgatgaccg ccgccccaag ccccatggtg
     4561 ccgatgcagg cgatgcccag cggagccgcc agatggggat ggcgccggct gaggatcagc
     4621 cggccgcaga ccaccagcaa caacgccacg ccgacgcgga tcgccagcag cgccgccagc
     4681 agcgggccct cgatcatcca gatgtcgacg ccggcgaagg acagccacac cagcagcgcg
     4741 aagatcaccg cgacgcgctt gagctccagc gtgtcgcgca gcatgtaggc gcggtattcc
     4801 agctccaggc ccggcgcgaa acgcaacagg cgatagccgc gcgagagctg ctcggcgtag
     4861 ggattggggc ggacatcggc cagccagtcg gagtgcagcg acacagaacc tcgcaaaatc
     4921 gatcgcctgg agccacccta gcgtcttgag aagcacgtca caagtttgtc gccaatcctt
     4981 tggcgtaaag aatcgttacc gcagcgacat cagacctcga actccgcctg cagcgcggcg
     5041 cgcacgcagt gcagcacacc ctccggcacc tgaccggcaa actgttcggc caccgccgcc
     5101 accggcggca gctcgccctc gccgtcgagg aaggcatcct ggatctcgcc gagcaggtct
     5161 tcgggcaaat ccagtgcctg ctccagggac aactgctggc gaccgatggc ctcggccagc
     5221 aggttataca cgctcttctc gccgcagttc agctggctgg caatttgcgc gggcgtcatg
     5281 ccggcgcggg ccaggctgac cagttcgtga cgcaaatcgg tgacgacctt gggcgcctcg
     5341 gcggactcgc caccattaag cacctccagg aacgcctcgc catagcgctc cagcttgcgc
     5401 gcgccgacgc cgctgacctg ggccatgtcg gacagcgtgc gcggctggct gcgcagcatc
     5461 tccagcaggg tcgaatcggg gaagatgacg tagggcggca cgctgtgctc ctcggccagc
     5521 ttgcgccgca gggcgcgcag ggcttcccac tgctcgcgct cctcgccgcg caccagttgg
     5581 ctggcgctgc tgccgctggc cttcgccgcc tgctggggct tgaggtcgcg acgcagctcg
     5641 agcttcacct cgccgcgcag cagcggccgg caggcgtcgg tcaggcgcag gccgccatag
     5701 ccgtccagat cgacgtcggc caggccgcgc gccaccaact ggcggaacag cgtgcgccac
     5761 tcggcctccg ccagcgcctt gccgatgccg aacaccggca ggtgctggtg gccggaggca
     5821 cggatcttgt cgttctcgcg gcccagcagg atgtccacca ggtggccgac gccatagcgc
     5881 tggccgctgc gatagatggc cgacaacgcc tggcgagccg gctcggtggc gtcccaggtc
     5941 tgcacgttgt cgacgcagga gtcgcactgg ccgcagggct tttccagcac ttcgtcgaag
     6001 tacgccagca gggcctgacg gcggcagcgg gtctcctcgc agagggcgag catggcatcg
     6061 agcttgtgct gctcgatgcg cttgtggcgc tcgtcgccct cggagttgct gagcatctgc
     6121 ttgaggaaga tcacgtcctg caggccgtac gccatccagg cgtccgccgg caggccgtcg
     6181 cggccggcgc ggccggtttc ctggtaatag gcctccaggc tcttgggcag gtccatgtgg
     6241 cagacgaagc gcacgttggg cttgtcgatg cccatgccga aggcgatggt cgccaccatg
     6301 atcaggccct cctcgttgag gaagcgcttc tggtggtagg cacgcagctc gttgggcagg
     6361 ccggcgtggt acggcagcgc cgggaagccc tgggcgctga ggaagtcggc gacctcctcc
     6421 accttcttgc gcgacaggca gtagacgatg ccggcatcgc ccttgcgcgc ggcaaggaag
     6481 gccagcaatt gcttgcgcgg ctggtccttg ggctggatgc ggtagaagat gttcggccgg
     6541 tcgaagctgg agagaaagcg ctcggcctgc tccaggtgca gacgctgggc gatctcctcg
     6601 cgggtgcgca tgtccgccgt ggcggtcagg gcgatgcgcg gcacgccggg gaacagttcg
     6661 gccagctggc cgagttgcag gtactcggga cggaaatcgt ggccccactg cgagacgc
//
LOCUS       DATIHC010000542         5154 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31876, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000542 DATIHC010000000
VERSION     DATIHC010000542.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5154
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31876"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            155..463
                     /locus_tag="VLF16_08890"
     CDS             155..463
                     /locus_tag="VLF16_08890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HSX71036.1"
                     /translation="MNKLTALFAITALAATAGIAQARDLGPDEALKLRDAGTVQSFEK
                     LNAAALAKHQGGQVTETELEEEYGRYIYQVEVRDAQGVKWDMELDATNGQILKDHQDD
                     "
     gene            complement(579..3398)
                     /gene="mksF"
                     /locus_tag="VLF16_08895"
     CDS             complement(579..3398)
                     /gene="mksF"
                     /locus_tag="VLF16_08895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014853851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mks condensin complex protein MksF"
                     /protein_id="HSX71037.1"
                     /translation="MSQERYGIRRFALLNTAGYSLGIFPLENPLSVYGANNLGKSASI
                     NALQFPILARMSDMSFGKYSLEQSRKFYFASDTSYILVEVALPHGPHVIGVAGRGPGG
                     GFGHQFFAYQGELDLAHYQQDGTCLRQRELFKNLGQAGIVAYELKPEELRRLLVGGHT
                     SIPLDLTLIPLRSTSEQSLKTFRALFINLLHMREITAAKLKQLFLDAFEHSLRSGSVD
                     YIAATEEAFRDVRRMEQDYQALVAAGPLVEALSGGVAQRELLRGKLHRLSPLLDNLLG
                     AWQDYSGARKEELVIQAEHYRREQDGLQNEQRGGTAELMRLEREISEIQRWLGELSVL
                     KNRFALVTDAKVLEEQLLAAKDAHDELAGALAQSRQFSAEDLDERLRDLEKRLKSVKQ
                     QLDHADNNSYSRLREEFSQADVDRLMRLFNGQLFSLPLGEKGIQAEGEDWVKAVEAVL
                     DRFKGDTFAVPGLSIDLSHIEPPALQALADRAALRDQKDRLERELKQLKTQQAVANDR
                     AASKAQAEQLYQAVLDAQKALEDFRKSQTLAAEEPSKLEQLAEAEAAQDELKRASDAF
                     TERVQQLSAKLQLVGRQLADLEAKERTLEDALRRRQLLPADLPFGTPFMEPVDDSLEN
                     LLPLLNDYQDSWQALQRIDGQIDALYAQVRLKGVAKFDSEDDPERRLQLLVNAYAHRQ
                     DEALTLAKARRAAVTDIARTLRNIRSDYDNLEHQLALFNREINKRQVSNLESFRIVLA
                     PNRDALKHIDQIIHSAGQYEEGETLSVFDLSQSAEQDAKNEEAKDYLSRLVAANGNQL
                     GLKDLFELAFEITKVGGQPVMHTDIDGAASNGTTMTIKALTNMYLLLHLMDREQAGKV
                     RLPYYLDEAADIDERNQQALIETSLQLGFVPILASVKPQVSAHVAIDLEGGSGPNGIY
                     IDEADWKFIRRRETAKATEEQAEPA"
     gene            complement(3395..4105)
                     /gene="mksE"
                     /locus_tag="VLF16_08900"
     CDS             complement(3395..4105)
                     /gene="mksE"
                     /locus_tag="VLF16_08900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mks condensin complex protein MksE"
                     /protein_id="HSX71038.1"
                     /translation="MNIDLKELTQLAPIFRELFKGYHISRAAPELYTQLSNLQDQYRA
                     LFRSLGYELVCDSRGFYYFVPEQMGAQVNKTAQRLALFTFILVEHLADQGRDPLAVLD
                     GGSLGRDELPPLLEKYKDLFLQAEVTSQDELEEKIMRRMTQLGFASEENGVYRFLAPM
                     HRFLDVCLSVQQDRDLAASLHSNLPLPTPELVVDEAEEDIVRIEPLPAATEESEESEE
                     EALARAMAEERDAQEIDA"
     gene            complement(4102..>5154)
                     /locus_tag="VLF16_08905"
     CDS             complement(4102..>5154)
                     /locus_tag="VLF16_08905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003246364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71039.1"
                     /translation="PVAKSPNRFELNAQIHDFLAYLRREHRLGLCLEIEAYLRHLERL
                     AGYIQDAFEVRDGNDLARQLRLLDMRVRDVLKKLANDEQALVGVAERAKTSDRQIPLR
                     QRYAEVLATWDEYVEPMIQLVSADGAFEQGVRRVEQVLLRLLGEQQRLGQLVDDDLLL
                     RTHARILEMQTVAQLTLRKARELLLPLREEARRHNAVTRGAALALSVIRKKGLDALPQ
                     ASMPLFTRPQSTFLGTASQVESYVYALARFQPKPNQFPRASGARKGAPPKAPRTAREM
                     IERCEQALPLPDLMVWLLEQEPEGATDELLYWFSRLSRDGRFQRERLERRDYLTREHQ
                     VSLSSYALIKPAGTSA"
BASE COUNT          753 a         1631 c         1819 g          951 t
ORIGIN      
        1 gacagacctt cgccctctat gacgagatca atgaggagtg gctgaactgg gcgccgaaga
       61 tccgtctgga gaagtaggcg gattcagctt ggtttaagtc ggcctggcta tcgtggcctc
      121 cgtcgaaacc cattactccc gacggagaac acagatgaac aagctgactg cccttttcgc
      181 cattaccgct ctcgccgcta ccgccggtat cgcccaggcc cgtgacctcg gtcccgacga
      241 ggccctcaag ctgcgcgacg ccggcaccgt gcagagtttc gagaagctca acgccgccgc
      301 cctagccaag catcagggcg gccaggtcac cgagaccgag ctggaggaag agtacggccg
      361 ctacatctac caggttgagg tgcgtgacgc ccagggcgtg aagtgggaca tggagctgga
      421 cgccaccaat ggccagattc tcaaggacca ccaggacgac taagagccgg cagcgctgct
      481 taagctgcgc attctcggct gccagacctt cgccagaacg tttcttcctg ctaagaaaaa
      541 gggccgcatc agcggccctt ttcgtttgcg tggaagaatc aggccggctc ggcctgttcc
      601 tcggtcgcct tggcagtctc gcgacgcctg atgaacttcc agtcggcctc gtcgatgtag
      661 atgccgttgg ggccgctgcc gccttccaga tcgatggcca cgtgggccga gacctgcggc
      721 ttcaccgacg ccaggatcgg cacgaagccc agctgcaggc tggtctcgat cagcgcctgc
      781 tggttgcgct cgtcgatgtc cgccgcctcg tcgaggtagt agggcaggcg taccttgccg
      841 gcctgctcgc ggtccatcag gtgcagcaac aggtacatgt tggtcagcgc cttgatggtc
      901 atggtggtgc cgttggaggc ggcgccatcg atgtcggtgt gcatcaccgg ctgaccgccg
      961 accttggtga tctcgaaggc cagctcgaac aggtccttga ggcccagctg gttgccgttg
     1021 gcggcgacca ggcgcgacag gtagtccttg gcctcctcgt tcttggcgtc ctgctcggcg
     1081 ctctgtgaga ggtcgaacac cgacagggtc tcgccttcct cgtactggcc ggcgctgtgg
     1141 atgatctgat cgatgtgctt gagcgcgtcg cggttgggcg ccaggacgat gcggaagctc
     1201 tccaggttgg acacctggcg cttattgatc tcgcggttga acagcgccag ctggtgttcc
     1261 aggttgtcgt agtcgctgcg gatattgcgc agggtacggg cgatatcggt gaccgcggcg
     1321 cggcgggcct tggccagggt cagggcctcg tcctggcggt gcgcataggc gttgaccagc
     1381 agctgcaggc ggcgctccgg atcgtcctcg ctgtcgaact tggccacgcc cttgaggcgc
     1441 acctgggcgt acagcgcgtc gatctggccg tcgatgcgct gcagcgcctg ccagctgtcc
     1501 tggtagtcgt tgagcagcgg cagcaggttc tccaggctgt cgtcgacagg ctccatgaac
     1561 ggcgtgccga agggcaggtc ggccggcagc agctggcgac gacgcagggc gtcttccagc
     1621 gtgcgctcct tcgcttccag gtcggccagt tggcgaccga ccagctgcag cttggcggac
     1681 agctgctgca cgcgctcggt gaaggcgtcc gatgcgcgct tgagttcgtc ctgggcggcc
     1741 tcggcctcgg ccagctgctc cagcttgctc ggctcctcgg cggccagggt ctggctcttg
     1801 cggaagtctt ccagggcctt ctgcgcgtcc agcacggcct ggtacagctg ctcggcctgg
     1861 gccttgctcg ccgctcggtc gttggccacc gcctgttggg tcttgagttg cttgagctcg
     1921 cgctccaggc ggtccttctg gtcgcgcagg gcggcgcggt cggccagggc ctgcagggcc
     1981 ggcggttcga tgtgcgagag gtcgatggac agacccggca cggcgaaggt gtcgcccttg
     2041 aagcgatcca gcaccgcctc gacggccttg acccagtcct cgccctcggc ctggatgcct
     2101 ttctcaccca gcggcaggct gaacagctgg ccgttgaata ggcgcatcag gcggtccaca
     2161 tcggcctggc tgaactcctc gcgcaggcgc gagtagctgt tgttgtcggc gtggtcgagc
     2221 tgctgcttga ccgacttcag gcgcttctcc aggtcgcgca ggcgctcgtc caggtcttcg
     2281 gcggagaact ggcgggattg cgccagggcg ccggccagtt cgtcgtgggc gtccttcgca
     2341 gcgagcagct gctcctccag tactttggcg tccgtgacca gggcgaagcg gttcttcagc
     2401 accgacagct cgccgagcca gcgctggatt tcgctgatct cgcgctctag gcgcatcagc
     2461 tcggcggtgc cgccgcgctg ctcgttctgc aagccgtcct gctcgcggcg gtaatgctcg
     2521 gcctggatca ccagctcttc cttgcgcgcg ccggagtagt cctgccaggc gccgagcagg
     2581 ttatccagca gcggcgacag gcgatgcagc ttgccgcgca gcagctcgcg ctgggccacg
     2641 ccaccggaca gtgcctcgac cagcggaccg gcggcgacca gagcctggta gtcctgctcc
     2701 atgcggcgca cgtcgcggaa ggcctcttcg gtggcggcga tatagtcgac gctgcccgag
     2761 cgcaggctgt gttcgaaggc atcgaggaac agctgcttga gcttggccgc ggtgatctcg
     2821 cgcatgtgca gcaggttgat gaatagcgcg cggaaggtct tcaggctctg ctcgctggtg
     2881 gagcgcagcg ggatcagggt caggtccagc gggatgctgg tgtggccgcc gaccagcagg
     2941 cggcgcagtt cctcgggctt cagctcatag gcgacgatgc cggcctggcc gaggttcttg
     3001 aacagctcgc gctggcgcag gcaggtgccg tcctgctggt agtgggccag gtccagctcg
     3061 ccctggtagg cgaagaactg gtggccgaag ccgccgcccg ggccgcggcc ggccacgccg
     3121 atcacgtgcg ggccgtgggg cagggcgacc tcgaccagga tgtagctggt gtcgctggcg
     3181 aagtagaact tgcgcgactg ctccaggctg tacttgccga agctcatgtc ggacatgcgc
     3241 gcgagtatcg ggaactgcag cgcgttgatc gacgccgact tgcccaggtt gttggcgccg
     3301 tacaccgaca gcgggttctc cagcgggaag atgccgaggc tgtagccggc ggtgttcagc
     3361 agggcgaagc ggcggatgcc gtagcgttcc tggctcatgc gtcgatctcc tgggcgtcac
     3421 gttcctcggc catggcgcgg gccagggcct cttcctcgga ttcctctgat tcctcggtag
     3481 ccgcgggcag cggctcgata cgcacgatgt cttcttcggc ctcgtcgacc accagctccg
     3541 gtgtcggcag cggcaggttg ctgtgcaggc tggccgccag gtcgcggtcc tgctgcaccg
     3601 acaggcacac gtcgaggaag cggtgcatcg gcgcgaggaa gcggtacacg ccgttctcct
     3661 cgctggcgaa gccgagctgg gtcatgcgcc gcatgatctt ctcttccagc tcgtcctggc
     3721 tggtgacctc ggcctgcagg aacaggtcct tgtacttctc cagcagcggc ggcagctcgt
     3781 cgcgaccgag gctgccgccg tcgagcacgg ccagcgggtc gcggccctgg tcggccaggt
     3841 gctcgaccag gatgaaggtg aacagcgcca ggcgctgggc ggtcttgttg acctgggcgc
     3901 ccatctgctc ggggacgaag tagtagaagc cgcggctgtc gcagaccagc tcgtagccga
     3961 gcgagcggaa cagcgcgcgg tactggtcct gcaggttgga cagctgggtg tacagctcgg
     4021 gggcggcgcg gctgatgtgg tagcccttga acagctcgcg gaagattggc gcgagctggg
     4081 tgagttcttt cagatcgata ttcatgcgga ggtcccggcc ggcttgatca gggcgtagga
     4141 gctcaggctg acctgatgct cgcgggtgag gtagtcgcgg cgctcgaggc gctcgcgctg
     4201 gaagcggccg tcgcgcgaca accgcgagaa ccagtagaga agttcatcgg tggcgccttc
     4261 cggctcctgc tccagcagcc agaccatcag gtccggcagt ggcagggcct gttcgcagcg
     4321 ctctatcatc tcgcgcgcgg tgcgtggcgc cttgggtggt gcgcccttgc gcgcgccact
     4381 ggcccgtggg aactggttgg gcttgggctg gaagcgggcg agggcgtaga cgtagctctc
     4441 cacctggctg gcggtgccga ggaaggtgct ctgcggccgg gtgaacagcg gcatcgaggc
     4501 ctgcggcaga gcgtccaggc ccttcttgcg gatcaccgac agggccagcg cggcgccgcg
     4561 ggtcacggcg ttgtgccggc gcgcttcctc gcgcagcggc agcagcagct cgcgggcctt
     4621 gcgcagggtc agctgggcga cggtctgcat ctccaggatg cgcgcgtggg tgcgcagcag
     4681 cagatcgtcg tcgaccagtt ggccgaggcg ttgctgctcg ccgagcaggc gcagcagcac
     4741 ctgctcgacg cggcgcacgc cctgctcgaa ggcgccgtcg gcggagacca gctggatcat
     4801 cggctcgacg tattcgtccc aggtcgccag cacctcggca tagcgctggc gcagcggaat
     4861 ctgccggtcg ctggtcttgg cccgctcggc gacgcctacc agggcctgct cgtcgttggc
     4921 cagcttcttc agcacgtcgc gcacgcgcat gtcgagcagg cgcagctggc gcgccaggtc
     4981 gttgccgtcg cgcacttcga aggcgtcctg gatataaccg gccaggcgct cgaggtggcg
     5041 caggtaggct tcgatctcca ggcacaggcc gaggcggtgt tcgcggcgca ggtaggcgag
     5101 gaagtcgtgg atctgcgcgt tcagctcgaa gcggttgggg ctcttggcca ccgg
//
LOCUS       DATIHC010000543         2880 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10852, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000543 DATIHC010000000
VERSION     DATIHC010000543.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2880)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2880)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2880
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10852"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..546
                     /locus_tag="VLF16_08910"
     CDS             <1..546
                     /locus_tag="VLF16_08910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010467366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
                     /protein_id="HSX71040.1"
                     /translation="PRAEFFCQQLREFLILAREQQVDPLTLKGSYAGAMGLPQFMPSS
                     FRAYAVDFDGDGHIDIWTNPVDAIGSVASYFKRHGWTTGEAVVSRAQVKGEQADSGLT
                     QGLDPVKNVGELRALGWVSADVLRDDIPVTAFRFDGAEGQEYWMGLPNFYVITRYNRS
                     AMYAMAVHQLSDELAAKRGQP"
     gene            591..1544
                     /locus_tag="VLF16_08915"
     CDS             591..1544
                     /locus_tag="VLF16_08915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HSX71041.1"
                     /translation="MVSCSSNRAPQPVEPGSRPISGPSDYARPHRDGAPWWDVDVSRI
                     PDAVPMPHYGNFKANPYTVLGKTYYPIRDSRRYQATGTASWYGTKFHGQATANGEAYD
                     LYGMTAAHKTLPLPSYVRVTNLDNGKTVILRVNDRGPFYSDRIIDLSFAAAKKLGYAE
                     SGTARVKVEGIDPHEWWAAQGRPVPMVLAQPKMASPAVAEPVAVAASQPIEQYTPPPA
                     QHAAAVLPVQVDVKKNASPAASGLYLQVAAFANPDAAELLKAKLSETVPAKVFISSVV
                     RNQQILHRVRLGPVGTQAEAQQLQNSVRLANLGDPALVKAD"
     gene            1634..2809
                     /locus_tag="VLF16_08920"
     CDS             1634..2809
                     /locus_tag="VLF16_08920"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase family
                     protein"
                     /protein_id="HSX71042.1"
                     /translation="MNIARLAQRLSLLLTLLAAPLAASAEQAIPSPPQLAAKSYVLMD
                     GGSGKVLVENNGDQRLPPASLTKLMTAYIATLEIRKGKIGEQDLVTVSEHAWRTGGAA
                     SGGSTMFLPINSQVSVDDLLHGIIIQSGNDASIALAEYIAGSEDAFADMMNATAERLG
                     MKNSHFMNATGLPHPEHYSSAHDMAILARAIINEDQEHYAIYSQKEFYWNNIKQGNRN
                     LLLWRDSTVDGLKTGHTEEAGYCLVASAVRDGARMITSVFGTDSEKTRAAETQKLLTY
                     GFRFFETQTFYKQGQELAQAQVWKGTTRQVKAGLAQDLTLTLPRGQVKQLQASMVLEP
                     QLVAPLAQGDVIGKVEVKLGEQVVHSADLIALEPVEEGGFFRRLWDSIRLFFYGLFN"
BASE COUNT          528 a         1025 c          899 g          428 t
ORIGIN      
        1 ccgcgggccg aattcttctg ccagcagctg cgcgagttcc tcatcctggc gcgcgagcag
       61 caggtcgatc cgctcaccct caagggctcc tacgccggcg ccatgggcct gccgcaattc
      121 atgccgagca gcttccgcgc ctacgccgtg gacttcgatg gcgacggcca catcgacatc
      181 tggaccaacc cggtggacgc catcggcagc gtcgccagct acttcaagcg ccacggctgg
      241 actaccggcg aagcggtggt cagccgcgcc caggtcaagg gcgagcaggc cgacagcggc
      301 ctgacccagg ggctcgaccc ggtgaagaac gtcggcgagc tgcgtgccct gggctgggtc
      361 agcgccgacg tgctgcgcga cgacattccc gttaccgcct tccgcttcga cggcgccgaa
      421 ggccaggagt actggatggg tctgcccaac ttctacgtga tcacccgcta caaccgcagc
      481 gccatgtacg ccatggcggt tcaccagctc tccgacgagc tggccgccaa gcggggtcag
      541 ccgtgaagcc cgtcctgcgc accctgaccg ccacggccat cggcctggcg ctggtcagct
      601 gttccagcaa ccgggccccg cagccggtcg agcccggctc ccggccgatc tccgggccct
      661 cggactacgc ccggccgcac cgcgacggcg cgccctggtg ggacgtcgat gtatcgcgca
      721 tccccgacgc cgtgccgatg ccgcactacg gcaatttcaa ggccaacccc tacacggtgc
      781 tgggcaagac ctactacccg atccgcgaca gccgccgtta tcaggccacc ggcaccgcct
      841 cctggtacgg caccaagttc cacggtcagg ccaccgccaa cggcgaggcc tacgacctgt
      901 acggcatgac cgccgcgcac aagacgctgc cgctgccgag ctatgtgcgg gtgaccaacc
      961 tggacaacgg caagaccgtg atcctgcggg tcaacgaccg cggcccgttc tactccgatc
     1021 gcatcatcga cctgtccttc gccgcggcaa agaaactcgg ctatgccgag agcggcaccg
     1081 cgcgggtcaa ggtcgagggc atcgatccgc acgagtggtg ggcggcgcag ggccgtccgg
     1141 tgcccatggt cctggcccag ccgaagatgg ccagcccggc cgtcgccgag ccggtggccg
     1201 tggccgccag ccagccgatc gagcagtaca cgccgccgcc cgcgcagcac gccgcggccg
     1261 tgctgccggt gcaggtcgac gtaaaaaaaa acgcttcgcc cgcagcctct ggcctgtatc
     1321 tccaagtggc cgccttcgcc aatccggacg ctgcggagct cctcaaggcc aagctgagcg
     1381 agacggtgcc tgccaaggtg tttatcagct cggtggtgcg caaccagcag atcttgcacc
     1441 gggtgcgcct ggggccggtc ggaacccagg ctgaggcgca gcagctgcag aacagcgtgc
     1501 gcctggccaa cctcggcgac ccggccctgg tcaaggccga ctgaagactt cgtgcgtcgc
     1561 cctcccgggc ggcggtgaat gtgggcggac ctcggttcgc ccattccatt gttgaaaagc
     1621 tatagagaga aggatgaaca tcgcccgcct tgcccaacgc ctgtccctgc tcctcacact
     1681 tctggccgcc cccctcgcgg catccgccga gcaggccatc ccctcgccgc cgcaactggc
     1741 cgccaaatcc tacgtactga tggatggcgg cagcggcaag gtgctggtgg agaacaacgg
     1801 cgaccagcgc ctgcccccgg ccagcctgac caagctgatg accgcctaca tcgccaccct
     1861 ggagatccgc aagggcaaga tcggcgagca ggacctggtg accgtcagcg agcacgcctg
     1921 gcgcaccggt ggcgccgcat ccggcggttc caccatgttc ctgccgatca acagccaggt
     1981 ctccgtggac gacctgctgc acggcatcat catccagtcc ggcaacgacg ccagcatcgc
     2041 cctggccgag tacatcgccg gcagcgagga cgccttcgcc gacatgatga acgccaccgc
     2101 cgaacggctg ggcatgaaga actcgcactt catgaacgcc accggcctgc cgcacccgga
     2161 gcactattcc agcgcccacg acatggccat cctggcccgc gccatcatca acgaagacca
     2221 ggagcactat gcgatttact cgcagaagga gttctactgg aacaacatca agcagggtaa
     2281 ccgcaacctg ctgctgtggc gcgacagcac cgtggacggt ctgaagaccg gccacaccga
     2341 agaggccggc tattgcctgg tggcctcggc cgtacgcgac ggtgcgcgca tgatcacctc
     2401 ggtgttcggc accgacagcg agaagacccg cgccgccgag acccagaagc tgctgactta
     2461 cggcttccgc ttcttcgaga cccagacctt ctacaagcag ggccaggaac tggcccaggc
     2521 ccaggtttgg aagggcacca ctcgtcaggt caaggccggc ctggcccagg acctgaccct
     2581 aaccctgccg cgcggccagg tgaagcagct gcaggcctcc atggtgctgg agccgcaact
     2641 ggttgcgccg ctggcgcagg gcgacgtgat cggcaaggtc gaggtcaagc tgggcgagca
     2701 ggtggtgcac agcgcggacc tgatcgctct ggaaccggtg gaagagggcg ggttcttccg
     2761 ccgcttgtgg gatagcatcc gtctgttctt ctacggactg ttcaactaag agtcgtctgg
     2821 cggcttgaaa caccgccgtt cgggccccag ataagggact ggactgaaga ctctcaagga
//
LOCUS       DATIHC010000544         2125 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8605, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000544 DATIHC010000000
VERSION     DATIHC010000544.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2125
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8605"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..218
                     /locus_tag="VLF16_08925"
     CDS             <1..218
                     /locus_tag="VLF16_08925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSX71043.1"
                     /translation="ADQALARGQSSLLDSAVPAFERIMIETALKHTAGRRRDAAVLLG
                     WGRNTLTRKIKELGMKVDGSDEDDSED"
     gene            472..>2125
                     /gene="yccS"
                     /locus_tag="VLF16_08930"
     CDS             472..>2125
                     /gene="yccS"
                     /locus_tag="VLF16_08930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013789481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YccS family putative transporter"
                     /protein_id="HSX71044.1"
                     /translation="MPSSLRSTLRHLWAREKFTYGVRVFIALAGAMALCWYLDRIAFV
                     IPLFLGCIASALAESDDHWRGRSQALLVTLTCFGATASAVQLLFPYPWLFGGGLALAA
                     FAMTLLGGIGERYAAVAQATLILAIYTAIGLEHRGGMAGGFWQEPLLLIGGAAWYGLL
                     GIVWSALFSQQPVQQALSRVFDELGAYLRLKASLFEPVRQFDLEARRLELARQNGRVV
                     TALNLAKEIILNRMSRKRSGQKTNRYLKLYFIAQDIHERASSSHYPYNALAEAFFHSD
                     VMFRCGRLLSQQGKACQALGRAIRLRQPFDYNDNSQAMADLDASMTYLHEQQNPAWRR
                     LLRSLGALASNLATLERKLSSASNPDALADEQDSSLLDRSPQTFKEAFERLRQHVTPT
                     SLVFRHALRLSAALLAGYGLLHWIHPQQGYWILLTTLFVCRPSYGATRLRLVQRVSGT
                     LIGLVLGWALIRLFPDPLLQSLFAVGAGVVFFTNRVDRYTLATTAMTLVVVLCFNQIS
                     DAYTLLWPRLVDTVLGTVIAGLAVFFILPDWQGRKLNQVLAST"
BASE COUNT          316 a          809 c          661 g          339 t
ORIGIN      
        1 gggccgacca ggccctggcg cgcggccagt ccagcctgct ggacagcgcc gtgccggcct
       61 tcgagcggat catgatcgag accgcgctca agcacaccgc cggccgccgc cgcgacgccg
      121 ccgtgctgct gggctggggt cgcaacaccc tgacgcgcaa gatcaaggaa ctgggcatga
      181 aggtggacgg cagcgacgag gacgacagcg aggactgaac cccggtcgca ccatcggagc
      241 cgcgagaatg gtgcgcgcgg cgcaccctgc cgaggctcga tgagccatcc gagcaccttc
      301 gccggccagg tctttcgcct gccctgctcg cacctctccg cagtgggccg gctccacccg
      361 ctcgacacga acggctatcc tctgaacgaa aggtcaaaaa aggggtgcct cgctcgcctc
      421 ctgcgccgtc ttctcggcac accattcttc ttgcctggcc gccgttcgcc catgccctca
      481 tcgttgcgat ccacactgcg ccatctctgg gcgcgcgaga aattcaccta cggcgtgcgg
      541 gtattcatcg ccctggccgg ggccatggcg ctgtgctggt acctggaccg catcgccttc
      601 gtcatcccgc tgttcctcgg ctgcatcgcc agcgccctgg ccgagagcga cgaccactgg
      661 cgcggccgca gccaggcgct gctggtgacc ctgacctgct tcggcgccac cgccagcgcc
      721 gtgcaactgc tgttccccta cccctggctg ttcggcggcg gcctggccct ggcggccttc
      781 gccatgaccc tgctcggcgg catcggcgag cgctacgccg cggtggccca ggccaccctg
      841 atcctggcga tctacacggc catcggcctg gagcaccgcg gcggcatggc cggcggcttc
      901 tggcaggagc cgctgctgct gatcggcggc gccgcctggt acggcctgct ggggatcgtc
      961 tggagcgcgc tgttcagcca gcaaccggtg cagcaggcac tgtcgcgggt gttcgacgaa
     1021 ctcggcgcct acctgcgtct gaaggcctcg ctgttcgagc cggtcaggca gttcgacctc
     1081 gaggcccgtc gcctggagct ggcgcggcag aatggccggg tggtgacggc gctgaacctg
     1141 gccaaagaga tcatcctcaa ccgcatgagc cgcaagcgca gcgggcagaa gaccaaccgc
     1201 tacctcaagc tgtacttcat cgcccaggac atccacgagc gcgccagctc ctcgcactac
     1261 ccgtacaacg ccctggccga ggccttcttc cacagcgacg tgatgttccg ctgcggccgc
     1321 ctgctcagtc agcagggcaa ggcctgccag gcgctgggcc gggcgattcg gctgcgccag
     1381 ccgttcgact acaacgacaa cagccaggcc atggccgacc tcgatgcctc catgacctac
     1441 ctgcacgagc agcagaaccc ggcctggcgc cgcctgctgc gctcgctcgg cgcgctggcc
     1501 agcaacctcg ccaccctcga gcgcaagctg tccagcgcca gcaaccccga cgccctggcc
     1561 gacgaacagg acagcagcct gctcgaccgc tcgccgcaga ccttcaagga agccttcgag
     1621 cgcctgcgcc agcacgtcac ccccaccagc ctggtgttcc gccacgccct gcgcctgtcc
     1681 gccgcgctgc tcgccggcta cggcctgctg cactggattc acccgcagca gggctactgg
     1741 attctgctca ccaccctgtt cgtctgccgc cccagctacg gcgccacgcg cctgcgcctg
     1801 gtgcagcggg tcagcggtac gctgatcggc ctggtgctgg gctgggcgct gatccgcctg
     1861 ttccccgacc cactgctgca atcgctgttc gccgtcggcg ccggggtggt gttcttcacc
     1921 aaccgggtcg accgctacac cctggccacc accgccatga ccctggtggt ggtgctctgc
     1981 ttcaaccaga tcagcgacgc ctacaccctg ctctggccac gcctggtgga caccgtgctg
     2041 ggcaccgtga tcgccggcct ggcggtgttc ttcatcctgc cggactggca gggccgcaag
     2101 ctcaaccagg tgctggccag caccc
//
LOCUS       DATIHC010000545         1676 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_24055, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000545 DATIHC010000000
VERSION     DATIHC010000545.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1676)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1676
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24055"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..363)
                     /locus_tag="VLF16_08935"
     CDS             complement(<1..363)
                     /locus_tag="VLF16_08935"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253140.1"
                     /note="adds enolpyruvyl to UDP-N-acetylglucosamine as a
                     component of cell wall formation; gram-positive bacteria
                     have 2 copies of MurA which are active; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HSX71045.1"
                     /translation="MDKLIITGGIRLDGEIRISGAKNSALPILAATLLADTPVTVCNL
                     PHLHDITTMIELFGRMGVQPIIDEKLSVEVDASSIKTLVAPYELVKTMRASILVLGPM
                     VARFGEAEVALPGGCAIGS"
     gene            complement(377..616)
                     /locus_tag="VLF16_08940"
     CDS             complement(377..616)
                     /locus_tag="VLF16_08940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1990229 - iron-sulfur cluster assembly
                     complex [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family protein"
                     /protein_id="HSX71046.1"
                     /translation="MQAVEVKNLLEAKLPNTRVEVEGEGCNFQLNLISDELAALSPVK
                     RQQQIYAHLNEWIASGAIHAVTMKFFSQAAWAERS"
     gene            complement(792..1100)
                     /locus_tag="VLF16_08945"
     CDS             complement(792..1100)
                     /locus_tag="VLF16_08945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003155080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HSX71047.1"
                     /translation="MSNASIRLGAEGELLLGGVLDYRSGPSLREQGGELIRTSAASAL
                     VLDCAGVEKSSSVGLSLLLAFMRDARAAGKSVAVRALPEDMQGIARVSGLHELLGLPA
                     "
     gene            complement(1097..>1676)
                     /locus_tag="VLF16_08950"
     CDS             complement(1097..>1676)
                     /locus_tag="VLF16_08950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016852109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSX71048.1"
                     /translation="APSAHDVVKKTTDELLADLEANRAAYKQNPEAFYDTLERILGPV
                     VDSEGISRSIMTVKYSRKASDAQIKRFEENFKRGLMQFYGNALLEYDNQDIRVLPAKA
                     EGDDRASVGMEVKDSKGTLYPVSYTMVRIDGQWKLRNVIINGINVGKLFRDQFADTMQ
                     RNGDDLDKTIDGWGAVVAKAKESADGQKAGGQ"
BASE COUNT          278 a          540 c          547 g          311 t
ORIGIN      
        1 cgaaccgatg gcgcagccac cgggcagggc cacttcggcc tcgccgaagc gcgcgaccat
       61 cgggccgagt accaggatcg aggcgcgcat ggtcttcacc agttcatagg gcgcgaccag
      121 ggtcttgatg ctgctggcgt cgacttcgac ggacagtttc tcgtcgatga tcggctgcac
      181 gcccatgcga ccgaacagct cgatcatggt ggtgatgtcg tgcaggtgcg gcaggttgca
      241 cacggtgacc ggggtgtcgg ccagcagggt ggcggcgaga atcggcagcg cggagttctt
      301 cgcgccggaa atgcggattt cgccgtcgag gcggataccg ccggtgatga tcagtttgtc
      361 cattcgaatc tcgggctcac gaacgctcgg cccaggcggc ctggctgaag aatttcatgg
      421 tcacggcgtg gatggcacca ctggcgatcc actcgttgag gtgggcgtaa atctgttgct
      481 ggcgcttgac cgggctgagg gcggccagct catcgctgat caggttcagc tggaagttgc
      541 agccctcgcc ctctacctcg acgcgggtgt tgggcagctt ggcctccagg aggttcttaa
      601 cttctacggc ctgcatgctc aaacctcgat cggcacaaaa gaattcatgg gcgggccagg
      661 gctcgcgggt cggcaatcat acaaaaaagc cccccgcctg cgaagcccgg cagacggagg
      721 gccttgacgc gatcagaacc cgagcgacct cgagccgtga acccgtgcga gaagccgcct
      781 gcgtgcggaa ctcaggccgg caggccgagc agctcgtgca ggccggaaac ccgggcgatg
      841 ccctgcatgt cttccggcag cgcacgtacc gcgaccgact tgccggcggc ccgggcatcg
      901 cgcatgaatg ccagcagcag cgacagaccc acactgctgg acttctccac gcccgcacag
      961 tccagcacca gcgcagacgc ggcgctggtg cggatcagct cgccgccctg ctcgcgcaac
     1021 gacggcccgc tgcgatagtc gagcacgcca ccgagcagca attcgccctc cgcacccagg
     1081 cggatggagg cgttgctcat tgaccgcctg ccttctggcc gtcggcgctt tccttggcct
     1141 tggccaccac cgcgccccag ccatcgatgg tcttgtccag atcgtcgcca ttgcgctgca
     1201 tggtgtcggc gaactgatcg cggaacagct tgccgacgtt gataccgttg atgatcacgt
     1261 tgcgcagctt ccactgaccg tcgatccgca ccatggtgta ggacacggga tagagggtgc
     1321 ccttgctgtc cttgacctcc atgccgacgc tggcgcggtc gtcgccctcg gccttggccg
     1381 gcagcacgcg gatgtcctgg ttgtcgtact cgagcagggc gttgccatag aactgcatca
     1441 ggccgcgctt gaagttctcc tcgaagcgct tgatctgcgc gtcgctggcc ttgcgcgagt
     1501 atttgacggt catgatgctg cgcgagatgc cctcgctgtc caccaccggg ccgaggatgc
     1561 gctccagcgt gtcgtagaac gcctcaggat tctgcttgta ggcggcgcgg ttggcctcca
     1621 ggtcggcgag cagttcgtcg gtggtcttct tcaccacgtc atgggcgctc ggggcg
//
LOCUS       DATIHC010000546         3035 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29486, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000546 DATIHC010000000
VERSION     DATIHC010000546.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3035
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29486"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1076
                     /gene="murD"
                     /locus_tag="VLF16_08955"
     CDS             <1..1076
                     /gene="murD"
                     /locus_tag="VLF16_08955"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003459323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HSX71049.1"
                     /translation="IELDATITMPKQASAIDTPSSHGSKRPSIASRRVAWRLRAVAAG
                     RKVAVGGNIGTPALDLLSDDVELYVLELSSFQLETTERLNAEVATCLNISEDHMDRYD
                     GMAQYHLAKHRIFRGARQVVVNRDDALSRPLIADQVPCWTFGLGKPDFKRFGLLEEHG
                     EKQLAFQFETLMPTAELKIRGAHNQSNALAALALGHAVGLPFAAMLETLRRFAGLPHR
                     CQWVRELRGVGYYDDSKATNVGAALAAIEGLGADIAGKLVLIAGGDGKGADFSALKAP
                     VAKFCRAVVLLGRDAERLAEALGDAAPLVRVSTLDEAVQRAAELAESGDAVLLSPACA
                     SLDMFKNFEERGRLFAQAAEGLQ"
     gene            1073..2296
                     /gene="ftsW"
                     /locus_tag="VLF16_08960"
     CDS             1073..2296
                     /gene="ftsW"
                     /locus_tag="VLF16_08960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016491011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HSX71050.1"
                     /translation="MILLGRLLALPSPLRTRRGIDLDFPLLAGCLALLGLGLVMITSA
                     SSEVAAALSGNPLYHMIRHLIYLAIGISAAVATLMIPMAFWQRYGASLLLVAFALLVL
                     VLIPGIGREVNGAKRWIGFGMFNVQPSELAKLFTVVFIAGYLVRRQEEVREKLSGFLK
                     PMLVLGPMAALLLAEPDFGATVVLVGSCIAMLFLGGINLLRFIPLVAVVLAAGVLVMT
                     SQAYRLERLTNFIDPWADQYGAGYQLSQALIAFGRGEWFGVGLGNSIQKQFYLPEAHT
                     DFVFAVLAEELGMIGALATVGLFVFVAVRALYIGLWAEKAKQFFSAYVAYGIAMQWIG
                     QVLINIGVNVGLLPTKGLTLPFLSYGGSSLIICCVSLAILLRIEWERRTSLGSEDVEF
                     SETDFLEGEEVGHAR"
     gene            2286..>3035
                     /locus_tag="VLF16_08965"
     CDS             2286..>3035
                     /locus_tag="VLF16_08965"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0050511 -
                     undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase activity [Evidence
                     IEA];
                     GO_function: GO:0051991 -
                     UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-
                     glutamyl-meso-2,
                     6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol
                     4-beta-N-acetylglucosaminlytransferase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0007049 - cell cycle [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0030259 - lipid glycosylation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--N-acetylmuramyl-
                     (pentapeptide) pyrophosphoryl-undecaprenol
                     N-acetylglucosamine transferase"
                     /protein_id="HSX71051.1"
                     /translation="MRGNVLIMAGGTGGHVFPALACAREFKARGYAVHWLGTPRGIEN
                     ELVPAAELPLHLIQVSGLRGKGKLSLLKAPLQLIRALFQARRVMRELKPVCVLGMGGY
                     VTGPGGLAARLDGAPLVIHEQNAVAGTANRSLVPFATRVCEAFPSTFGRRAKLRTTGN
                     PVREELFLETPRDSLAGRQPRLLVLGGSLGAEPLNKLLPAALAKVAADLRPQVFHQAG
                     KQHDQVTAERYREAGVEAEVAPFIKDMARAYA"
BASE COUNT          427 a         1071 c         1027 g          510 t
ORIGIN      
        1 cgatcgagct ggacgcgacc atcaccatgc cgaagcaggc cagcgcgatc gacacgccca
       61 gcagccacgg atcgaagcgg ccttcgatcg cgtccaggcg cgtggcctgg cggttgcggg
      121 cggtggcggc cggcaggaag gtcgcggtcg gcggcaatat cggcaccccg gcgctggatc
      181 tgctcagcga tgacgtcgag ctgtacgtgc tggaactgtc cagcttccag ctggagacca
      241 ccgagcgcct gaatgccgag gtcgccacct gcctgaacat cagcgaagac cacatggacc
      301 gctacgacgg catggcccaa taccacctgg ccaagcaccg gatcttccgt ggagcgcgcc
      361 aggtggtggt gaatcgcgac gacgccctgt cccgtccgct gatcgccgac caggtgccgt
      421 gctggacctt cggcctgggc aagcccgact tcaagcgctt cggtctgctc gaggagcacg
      481 gcgagaagca gctggccttc cagttcgaaa ccctgatgcc gaccgccgag ctgaagatcc
      541 gcggcgcgca caaccagtcc aacgccctgg cggccctggc cctcggccac gccgtcggcc
      601 tgccgttcgc cgcgatgctc gagaccctgc gtcgcttcgc cggtctgccg caccgttgcc
      661 agtgggtgcg cgagctgcgc ggcgtgggct actacgacga ctccaaggcc accaatgtcg
      721 gcgccgccct ggccgctatc gaaggcctgg gtgccgatat cgccggcaag ctggtgctga
      781 tcgctggcgg cgacggcaag ggtgccgatt tctccgcatt gaaggcgccg gtggccaagt
      841 tctgccgcgc cgtggtgctg ctcggccgcg atgccgagcg cctcgccgaa gcgctcggcg
      901 acgccgcccc gctggtccgc gtgagcaccc tggacgaggc cgtgcagcgc gctgccgagc
      961 tggccgaatc cggcgacgcc gtgctgctgt cgccggcctg cgccagcctg gacatgttca
     1021 agaacttcga agagcgtggg cgtctgttcg cccaggcggc ggagggcctg caatgatcct
     1081 gctcggtcgc ctgctcgccc tgccgtcgcc gctgcgcacc cgtcgcggca tcgacctgga
     1141 cttcccgctg ctcgccggct gcctggccct gctgggcctg ggcctggtga tgatcacctc
     1201 ggccagctcg gaagtcgccg cggcgctgtc gggcaacccg ctgtaccaca tgattcgcca
     1261 cctgatctat ctggccatcg gcatcagcgc ggccgtcgcc accctgatga tccccatggc
     1321 cttctggcag cgctacggcg ccagcctgct gctggtcgcc ttcgccctgc tcgtgctggt
     1381 gctgattccc ggcatcggcc gcgaagtgaa cggcgccaag cgctggatcg gcttcggcat
     1441 gttcaacgtg cagccgtccg aactggccaa gctgttcacc gtggtgttca tcgccggcta
     1501 cctggtgcgc cgtcaggaag aggtgcgcga gaagctctcc ggcttcctca agccgatgct
     1561 ggtgctcggc cccatggccg cgctgctgct ggccgagccg gacttcggcg ccaccgtggt
     1621 tctggtcggt tcttgcatcg ccatgctgtt cctcggcggc atcaacctgc tgcgcttcat
     1681 tccgctggtg gcggtggtgc tggccgccgg tgtgctggtg atgaccagcc aggcctatcg
     1741 cctggagcgc ctgaccaact tcatcgaccc ctgggccgac cagtacggtg caggctacca
     1801 gctgagccag gcgctgattg ccttcggccg cggcgaatgg ttcggcgtcg gcctgggcaa
     1861 cagcatccag aagcagttct acctgcccga ggcgcacacc gacttcgtct tcgccgtgct
     1921 ggccgaggag ctgggcatga tcggcgccct ggccaccgtc gggctgttcg tcttcgtcgc
     1981 cgtgcgcgcc ctgtacatcg gcctgtgggc ggagaaggcc aagcagttct tctccgccta
     2041 tgtggcctac ggcatcgcca tgcagtggat cggccaggtg ctgatcaaca tcggcgtgaa
     2101 cgtcggcctg ctgccgacca agggcctgac cctgccgttc ctcagctacg gcggcagctc
     2161 gctgatcatc tgctgcgtca gcctggcgat cctgctgcgc atcgaatggg agcgccgcac
     2221 ctcgctcggc agcgaggacg tggagttcag cgagacggat ttcctcgagg gcgaggaggt
     2281 cggccatgcg cggtaacgtc ctgatcatgg ccggcggtac cggcggccac gtgttcccgg
     2341 cattggcctg cgcccgcgaa ttcaaggcgc gcggttatgc cgtgcattgg ctgggcacgc
     2401 cgcgcggcat cgagaacgag ctggtgccgg ccgccgagct gccgttgcac ctgatccagg
     2461 tttccggcct gcgtggcaag ggcaagctgt cgctgctcaa ggcgccgctg cagctgattc
     2521 gcgcgctgtt ccaggcgcgc cgcgtgatgc gcgagctcaa gccagtctgc gtgctgggca
     2581 tgggcggcta cgtcactggc ccgggcggtt tggccgcgcg gctcgacggc gcgccgctgg
     2641 tgatccacga gcagaacgcc gtggccggca ccgccaaccg cagcctggtg ccgttcgcca
     2701 cgcgcgtgtg cgaggccttc ccgagcacct tcggccggcg cgccaagctg cgtaccaccg
     2761 gcaacccggt gcgcgaggag ctgttcctcg agaccccgcg cgacagcctg gccgggcgcc
     2821 agccgcgcct gctggtactc ggcggcagcc tgggcgccga gccgctcaac aagctgctgc
     2881 cggcggccct ggccaaagtg gctgccgacc tgcgcccgca ggtgttccac caggccggca
     2941 agcagcacga ccaggtcacc gccgagcgct accgcgaggc gggtgtcgag gccgaagtcg
     3001 cgcccttcat caaggacatg gcccgggcct acgcc
//
LOCUS       DATIHC010000547         1729 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31893, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000547 DATIHC010000000
VERSION     DATIHC010000547.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1729
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31893"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..702
                     /gene="earP"
                     /locus_tag="VLF16_08970"
     CDS             <1..702
                     /gene="earP"
                     /locus_tag="VLF16_08970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003240093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0106361 - protein-arginine
                     rhamnosyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P maturation arginine
                     rhamnosyltransferase EarP"
                     /protein_id="HSX71052.1"
                     /translation="GLLREAGLIKRRRAFQADASARHAFLAGIGIEPLAGARLVSLFA
                     YENAALAGWLEALAVATEPTQLLVPRGRIEGDLRRWLGVETLEEGGVWNRGSLRVHLL
                     PFLSQADYDRLLWSCDLNAIRGEDSFVRAQWAGRPLLWHIYPQEAGAHWDKLEAFLDL
                     YCDAMPPAAAAALRALWHAWNGEGDMASAWRALQGQAQALAEHAERWCAAQASRPDLA
                     SALVQFHRNWLSCRA"
     gene            737..1312
                     /gene="efp"
                     /locus_tag="VLF16_08975"
     CDS             737..1312
                     /gene="efp"
                     /locus_tag="VLF16_08975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003240094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HSX71053.1"
                     /translation="MKTAQEMKANSVALIDGHPWLIQKAEFTKSGRNSAIVKMKLKNL
                     INGSKTETVYKADDKMEPVILERKEVTLSYISGDDYVFMDPEYNSYELRAEDLESVLP
                     FIEEGMTDVCEAVFFEGKVISVDLPTTIVRQITYTENSARGDTSGKVMKPAKLRNGTE
                     VKVADFCNIDDWIEIDTRDGSYKSRTQAPSA"
     gene            complement(1363..>1729)
                     /locus_tag="VLF16_08980"
     CDS             complement(1363..>1729)
                     /locus_tag="VLF16_08980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014596966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HSX71054.1"
                     /translation="DWDALSPPHAWRFEVDGRLQLLRPGRLRMTANNAEALLFSAIAG
                     LGIAHLPTWLIGDHLLRGELVPLLCDDGLPPAEPSGIYALRLASDASSRTRLLLEFLK
                     QRFGPVPPWDLALQRGLRN"
BASE COUNT          309 a          569 c          578 g          273 t
ORIGIN      
        1 gggctgctgc gcgaggccgg gctgatcaag cggcgacgcg cctttcaggc ggacgcgtcg
       61 gcccgtcatg cctttctcgc cggcatcggc atcgagccgc tggccggcgc ccggctggtc
      121 tcgctattcg cctacgaaaa tgccgcgctg gccggctggc tggaggcgct ggccgtcgcc
      181 accgagccga cccagctgct ggtgccgcgc gggcgcatcg agggcgatct gcgccgctgg
      241 ctgggtgtgg agacgctgga ggagggcggc gtctggaacc gcggcagtct gcgggtgcat
      301 ctgctgccgt tcctcagcca ggcggattac gaccgcctgc tatggagctg cgacctcaat
      361 gccatccgcg gcgaggactc cttcgttcgc gcccaatggg ccggccggcc gttgctctgg
      421 cacatttatc cgcaggaggc cggggcgcac tgggacaagc tggaggcctt cctcgatctg
      481 tactgcgacg cgatgccgcc agcggctgcc gccgcgttgc gggcgctgtg gcacgcctgg
      541 aacggcgagg gcgacatggc ctcggcctgg agggcgctgc agggccaggc gcaggccttg
      601 gccgagcacg ccgagcgctg gtgcgcggcg caggcctctc gtcccgatct cgcctcggcg
      661 ctggtgcagt ttcaccgaaa ttggctatca tgccgggcct agaaatttgt acctccatcc
      721 aaatccggat actcgtatga aaaccgcaca agaaatgaag gccaacagtg tggccctgat
      781 cgacggccat ccgtggctga tccagaaagc cgaattcacc aagtccggcc gcaacagcgc
      841 catcgtcaag atgaagctga agaacctgat caacggctcc aagaccgaaa ccgtctacaa
      901 ggccgacgac aagatggagc cggtcatcct tgagcgcaag gaagtgaccc tgtcctacat
      961 cagcggtgac gactacgtct tcatggatcc ggagtacaac tcctacgagc tgcgcgccga
     1021 agacctggaa agcgtcctgc cgttcatcga agaaggcatg accgacgtct gcgaagccgt
     1081 gttcttcgaa ggcaaggtga tctccgttga cctgccgacc accatcgttc gccagatcac
     1141 ctacaccgag aactccgccc gtggcgacac ctccggcaag gtcatgaagc ctgccaagct
     1201 gcgcaacggt accgaagtaa aagtcgccga cttctgcaac atcgacgact ggatcgagat
     1261 cgacacccgt gacggttcct acaagagccg tacccaggcg ccgtcggcct aagccgcccg
     1321 cctcgaaaaa gcccggcccg tgcgccgggc tttttttcgc cctcagtttc tcaggccgcg
     1381 ctgcagggcc aggtcccagg gcggcacggg gccgaagcgc tgcttgagga attccagcag
     1441 caggcgggtg cgcgaactgg cgtcgctggc cagacgcagg gcatagatgc cgctgggctc
     1501 ggccggtggc aggccgtcgt cgcagagcag cggcaccagt tcgccacgca gcaggtggtc
     1561 gccgatcagc caggtcggca ggtgggcgat gccgagaccg gcgatggcgc tgaacagcag
     1621 ggcctcggcg ttgttggcgg tcatgcgcag gcggcccggg cgcaacagct gcagccggcc
     1681 gtccacctcg aagcgccagg cgtgcggcgg ggacagggcg tcccagtcc
//
LOCUS       DATIHC010000548         1529 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31894, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000548 DATIHC010000000
VERSION     DATIHC010000548.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1529
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31894"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1470)
                     /locus_tag="VLF16_08985"
     CDS             complement(<1..1470)
                     /locus_tag="VLF16_08985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012272681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HSX71055.1"
                     /translation="MVLARPAWAESAQGGRAPAQASSSEGYAAADSCFGCHAEQATQW
                     QDSDHAWAMRDATEDNVLGRFDDAMFDEAGVKARFFRRGNVFFVNTEGEDGKPADFRI
                     LYTFGFHPLQQYLVAFPGGRLQALTVAWDSRSKEEGGQRWFSLYPGQRFAPGDPLHWT
                     GRYQNWNAMCADCHSSRLLKHYDDRNDSFASTWQEQTVGCQGCHGPGRAHVEWAKRAP
                     ADGTSHTSAREIGLNVDFRALGSHGQVEQCAFCHSRRQSLGVGQMPGHPQLDQSLPAT
                     LRADLYHADGQISGEVYEFGSFTQSKMYAAGVACTDCHDPHTSKVRIEGNGLCLQCHN
                     QKPPIARFSGLQAKNYDNAAHHHHTPGSAGAQCVNCHMPEKTYMVVDPRRDHSFRTPR
                     PDLAVATASPDACTSCHTEKKPVWAAEAIERWFGEPKRPNHYGDSFHAVRSGQGISLS
                     LLGRLLANDESPPIVRATAADELADIGPAAMLNLKWALKD"
BASE COUNT          242 a          496 c          500 g          291 t
ORIGIN      
        1 gtccttgagc gcccatttca ggttcagcat tgccgccggg ccgatatccg ccaactcgtc
       61 cgccgccgtc gcacggacaa tgggcggact ctcgtcgttc gccagcagtc tgcccagcag
      121 gctgagcgat atgccctgcc cgctgcgtac ggcgtggaag gagtcgccat agtgatttgg
      181 ccgcttgggt tcgccgaacc agcgttcgat ggcctcggct gcccaaaccg gcttcttttc
      241 ggtgtggcaa ctggtgcagg catccggact ggcggtcgcc acggcgaggt ccgggcgcgg
      301 tgtgcggaag ctgtggtcac ggcgcgggtc cacgaccatg tatgtctttt ctggcatgtg
      361 gcagttcacg cattgcgcgc ccgcggagcc gggcgtgtga tggtgatgcg ccgcgttgtc
      421 gtagttcttg gcctgcagac cggagaaccg tgcaatcggc ggcttctgat tgtggcattg
      481 caggcaaagc ccgttgccct cgattcgcac cttgctggtg tgcggatcat gacagtccgt
      541 gcaggccacg ccggcggcgt acatcttgct ctgtgtgaac gagccgaact cgtagacctc
      601 gccggaaatc tggccgtcgg catggtagag gtccgcgcgc aaggtggccg gcaggctctg
      661 atccagctgc ggatgccccg gcatctggcc gacgccgagg ctttgtctgc ggctatgaca
      721 gaacgcgcac tgttccacct gtccgtgact tcccagtgcc ctgaaatcca cgttcaggcc
      781 gatttctctg gcagaggtgt gggacgttcc gtccgccggc gcccgcttcg cccattcgac
      841 gtgtgcccgc cccgggccat ggcaaccctg gcagccgacg gtctgctcct gccaagtact
      901 ggcgaagctg tcgttccggt cgtcgtagtg cttgagcagg cgcgaagagt ggcagtcggc
      961 gcacatcgcg ttccagttct ggtagcgccc tgtccagtgc agtggatcgc ccggagcgaa
     1021 gcgctggccg gggtagagcg agaaccagcg ctggccaccc tcctccttcg acctgctgtc
     1081 ccacgcgacc gtcagcgcct ggaggcggcc gccgggaaat gcgaccagat actgctgcag
     1141 cgggtggaag ccaaaggtat agagaatccg gaagtccgcc ggcttgccat cttccccttc
     1201 ggtattgacg aagaagacgt tccccctgcg gaagaaccga gccttgacgc ccgcctcgtc
     1261 aaacatcgca tcatcgaaac ggcccagcac gttgtcctcg gttgcgtcgc gcatggccca
     1321 ggcgtgatcc gagtcctgcc actgcgtggc ctgctcggcg tgacagccga aacagctgtc
     1381 ggcagcggcg taaccttcgc tcgaggaggc ttgcgcgggt gcgcgaccgc cttgcgccga
     1441 ttcggcccag gcgggacgag cgaggaccag ggcggcgata accgtgcccc ggaacagcaa
     1501 agctgcgatg tctcggtacc tcactcccc
//
LOCUS       DATIHC010000549         2714 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_38085, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000549 DATIHC010000000
VERSION     DATIHC010000549.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2714)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2714)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2714
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38085"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..796
                     /locus_tag="VLF16_08990"
     CDS             <1..796
                     /locus_tag="VLF16_08990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015271931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hydroxymethylpyrimidine/phosphomethylpyrimidine
                     kinase"
                     /protein_id="HSX71056.1"
                     /translation="NRHNSRPVVLCLSGHDPSGGAGLQADIEALLAQGCHAAPAVTAL
                     TVQDTVDVADFRVLDRDWVLAQARAIIADLPVAAVKLGMLGSVQMVDTVVEIMQLLPG
                     VPLVCDPVLRAGGGGSLGKDDVGYAMRERLLPIAAAATPNLPEARILAELPEGTPDEC
                     AEKLSPFCQNLLITGGHGEEAEVHNRLYVRGGEHHTFTCARLPGSYHGSGCTLASTLA
                     GRLALGEEMVSAVRSALDYTWRTLRDAEQPGRGQFVPRRLPLDFSL"
     gene            819..1442
                     /gene="thiE"
                     /locus_tag="VLF16_08995"
     CDS             819..1442
                     /gene="thiE"
                     /locus_tag="VLF16_08995"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HSX71057.1"
                     /translation="MRGLYAITDSQLLAEGRLLPYVEAALRGGARLLQYRDKSADTAR
                     RLREAEALAELCARHGADLIINDDAELAARLGVGLHLGQGDGSLAAARALLGPRAIIG
                     GTCHASLELAEQAAREGASYIAFGRFFTSQTKPGAPSATPELLDQARSRFALPITAIG
                     GVSLDNGAELIARGADLLAVIHALFSAPSAAEVEARARAFSALFPTS"
     gene            1458..>2714
                     /gene="hemL"
                     /locus_tag="VLF16_09000"
     CDS             1458..>2714
                     /gene="hemL"
                     /locus_tag="VLF16_09000"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014720064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HSX71058.1"
                     /translation="MSRSETLFANAQKHIPGGVNSPVRAFRSVGGTPLFFKHAEGAYV
                     VDEDDKRYVDYVGSWGPMILGHAHPQVLDAVRKQLEHGLSYGAPTALEVEMAELVCSI
                     VPSMELVRMVSSGTEATMSAIRLARGHTGRDAIIKFEGCYHGHSDSLLVKAGSGLLTQ
                     GVPSSAGVPADFAKHTLTLPYNDLAAVEKTLAEVGQTVACIIVEPVAGNMNCVPPAPG
                     FLEGLREQCDKHGVVLIFDEVMTGFRVALGGAQAHYGVAPDLSTFGKIIGGGMPVGCF
                     GGKRAIMECIAPLGPVYQAGTLSGNPLAMAAGLTTLKLISRPGFHAELSEFTSRMLAG
                     LQERADAAGIPFVTTQAGAMFGLYFSGADDIVTFADVMASDAARFNKFFHLMLEGGVY
                     LAPSAFEAGFTSIAHGDKELEITFAAA"
BASE COUNT          393 a         1052 c          874 g          395 t
ORIGIN      
        1 gaacagacac aactcccgcc ccgtcgtcct ttgcctgtcc ggccatgatc cctccggggg
       61 tgccggcctg caggcggaca tcgaagccct gctcgcccag ggttgccacg ccgctccggc
      121 ggtcaccgct ctgaccgtgc aggacacggt cgacgtcgcc gacttccgcg tgctcgaccg
      181 cgactgggtg ctggcccagg cccgcgccat catcgccgat ctgccggtgg ccgccgtcaa
      241 gctgggcatg ctcggctcgg tacagatggt cgacacagtg gtcgagatca tgcagctgct
      301 gcccggcgtg ccgctggtct gtgacccggt gctgcgcgcc ggcggcggcg gctcgctggg
      361 caaggacgat gtcggctacg ccatgcgcga gcgcctgctg ccgatcgccg cggccgccac
      421 gccgaatctg cccgaggcac gtatcctcgc cgaactgccc gagggcacgc cggacgaatg
      481 cgccgagaag ctctcgccct tctgccagaa cctgctgatc accggcggcc acggcgagga
      541 agccgaagta cacaaccgcc tctacgtgcg cggcggcgaa caccacacct tcacctgcgc
      601 gcgcctgccg ggcagctacc acggctccgg ctgcaccctg gctagcaccc tggccggccg
      661 cctggccctg ggcgaggaaa tggtcagcgc cgtgcgctcg gcgctcgact acacctggcg
      721 caccctgcgc gacgccgagc aacccggccg cggacagttc gtgccacggc gcctgccgct
      781 ggacttctcc ctgtgaaggg ccgtccgtga gcaagcccct gcgcggcctc tacgcgatca
      841 ccgacagcca gttactggcc gagggtcgcc tgctgcccta cgtggaagcg gcgctgagag
      901 gtggcgcacg cctgctgcag taccgcgaca aatccgccga taccgcccgc cgcctgcgcg
      961 aggccgaggc cctggccgaa ctgtgcgccc gccacggcgc cgacctgatc atcaacgacg
     1021 acgccgagct ggccgcgcgc ctgggcgtcg gcctgcacct gggccagggc gatggctcgc
     1081 tggccgccgc ccgcgccctg ctcggcccgc gcgcgatcat cggcggcacc tgccacgcca
     1141 gcctcgagct ggccgagcag gccgcacgcg aaggcgccag ctacatcgcc ttcggccgct
     1201 tcttcacttc gcagaccaag cccggcgcgc cgagcgccac gcccgagctg ctggaccagg
     1261 cccgctcccg cttcgccctg ccgatcaccg ccatcggcgg cgtcagcctg gacaacggcg
     1321 ccgagctgat cgcccgcggc gccgacctgc tggcagtgat ccacgccctg ttctccgcgc
     1381 cctccgccgc cgaggtggaa gcccgcgccc gcgccttcag cgcactgttc cccacttcct
     1441 gattcgagag gcctgccatg tcccgttccg agaccctgtt cgccaacgcc cagaaacaca
     1501 tccccggcgg cgtcaactcg ccggtgcgcg ccttccgcag cgtcggcggc acgccgctgt
     1561 tcttcaagca cgccgaaggc gcctatgtgg tcgacgagga tgacaagcgc tacgtcgact
     1621 acgtcggctc ctggggcccg atgatcctcg gccacgccca cccgcaggtg ctggacgcgg
     1681 tgcgcaagca gctggagcac ggcctgtcct acggcgcgcc gaccgcgctg gaagtggaga
     1741 tggccgagct ggtctgctcc atcgtgccgt ccatggagct ggtgcgcatg gtcagctccg
     1801 gtaccgaggc gaccatgagc gccatccgcc tggcccgcgg ccacaccggc cgcgacgcga
     1861 tcatcaagtt cgagggctgc taccacggcc actccgacag cctgctggtg aaggccggct
     1921 ccggcctgct gacgcaaggc gtaccgagct cggccggcgt gccggcggac ttcgccaagc
     1981 acaccctgac cctgccctac aacgacctgg ctgccgtcga aaagaccctg gccgaggtcg
     2041 gccagaccgt ggcctgcatc atcgtcgagc cggtggccgg caacatgaac tgtgtgccgc
     2101 cggcgccggg cttcctcgag ggcctgcgcg agcagtgcga caagcacggc gtggtgctga
     2161 tcttcgacga ggtgatgacc ggcttccgcg tcgccctcgg cggcgcccag gcccactacg
     2221 gcgtggcgcc ggacctgtcg accttcggca agatcatcgg cggcggcatg ccggtcggct
     2281 gcttcggcgg caagcgcgcg atcatggaat gcatcgcccc gctcggcccg gtctaccagg
     2341 ccggcaccct gtccggtaac ccgctggcca tggccgccgg cctgaccacc ctcaagctga
     2401 tcagccgccc gggcttccac gccgagctgt ccgagttcac cagccgcatg ctggccggcc
     2461 tgcaggagcg cgccgatgcc gccggcatcc ccttcgtcac cacccaggcc ggcgccatgt
     2521 tcggcctgta cttcagcggc gccgacgaca tcgtcacctt cgccgacgtg atggccagcg
     2581 acgcggcgcg cttcaacaag ttcttccacc tgatgctgga aggtggcgtg tatctggcgc
     2641 cgagcgcctt cgaggcgggc ttcacctcca tcgcccacgg cgacaaggaa ctggagatca
     2701 ccttcgccgc cgcc
//
LOCUS       DATIHC010000550         2532 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21722, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000550 DATIHC010000000
VERSION     DATIHC010000550.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2532)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2532)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2532
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21722"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1215)
                     /locus_tag="VLF16_09005"
     CDS             complement(<1..1215)
                     /locus_tag="VLF16_09005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012018766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HSX71059.1"
                     /translation="MFGRKWDIHTRTQLISVGPALLLTLLLTGFFTHTRLQDLRYEIN
                     QAGQLMANQLAPATAHGVAIGDVQVLETLLRATLQTPNVRFLEVRDRAENILVYVERR
                     VDQPASRVDIFHAPIRREHGTTDDYLGRVVVGMSDEAFTSRQQGILLKATLLALIALV
                     LTFFLARQLARRLAQPLSAMGQALESIKAGDYRTSLAETDSGELGDLARHINALAAEL
                     ERAGREQRESMQQLIQTREEAEQASRAKSDFLAMMSHELRTPMNGVLGMLQLLETTEM
                     TQEQEEYAALATESTEHLLKVINDILDFSRIERGALELERIPFSLLDLLLGSIQVFQH
                     SAQQRGLYLRLDNQAGLEDFEVQGDPTRIRQILVNLLGNALKFTEEGGIRIETRWQPL
                     DNEVLWFTCAVHD"
     gene            1433..2455
                     /locus_tag="VLF16_09010"
     CDS             1433..2455
                     /locus_tag="VLF16_09010"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009331 - glycerol-3-phosphate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0047952 - glycerol-3-phosphate
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006072 - glycerol-3-phosphate metabolic
                     process [Evidence IEA];
                     GO_process: GO:0046168 - glycerol-3-phosphate catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HSX71060.1"
                     /translation="MTEQLPVAVLGGGSFGTALANLLAANGQRVLQWMRDPEQAEAMR
                     TRRENPRYLKGIKLLPGIEPVTDLPATLAACELVFVALPSSALRQALQPLATGLAGKL
                     VVSTTKGIEAESFKLMSQILAEVAPQARIGVLSGPNLAREIAEHALTATVIASEDEAL
                     CERVQSALHGRTFRVYASRDSFGVELGGALKNVYAIIAGMAAALGMGENTKSMLITRA
                     LAEMTRFAVTLGANPMTFLGLAGVGDLIVTCSSPKSRNYQVGYALGEGLSLEDAVARL
                     GEVAEGVNTLKVLKNKAEELQVYMPLVAGLHAILFEGRTLDQVIQALMRGEPKTDVDF
                     ISPSGF"
BASE COUNT          412 a          824 c          875 g          421 t
ORIGIN      
        1 gtcgtgcacc gcgcaggtga accacagcac ctcgttgtcc agcggctgcc agcgggtctc
       61 gatgcggatg ccgccttcct cggtgaattt cagcgcgttg cccagcaggt tgaccaggat
      121 ctggcggatg cgggtcgggt cgccctgcac ctcgaaatcc tcgagccccg cctggttgtc
      181 cagacgcagg tacagaccgc gctgctgggc gctgtgctgg aacacctgga tggagccgag
      241 cagcaggtcc agcaaactga aggggatgcg ctccagctcc agggcgccgc gctcgatgcg
      301 cgagaagtcg aggatgtcgt tgatcacctt gagcaggtgt tcggtcgact cggtggccag
      361 ggccgcgtat tcctcctgct cctgggtcat ctcggtggtt tccagcagct gcagcatgcc
      421 cagcacgccg ttcatgggcg tgcgtagctc gtggctcatc atcgccagga aatcggactt
      481 ggcgcggctg gcctgctcgg cctcctcgcg ggtctggatc agctgctgca tggactcgcg
      541 ctgctcgcgg ccggcgcgtt ccagttcggc ggccagggcg ttgatgtgac gtgccagatc
      601 gcccagctca ccgctgtcgg tttccgccag gctggtacgg taatcgccgg ccttgatcga
      661 ctcgagcgcc tggcccatgg cgctcagcgg ctgcgccaga cgccgcgcca gctggcgtgc
      721 gaggaagaag gtcagcacca gggcgatcag cgccagcagc gtggccttga gcagaatgcc
      781 ctgctggcgg ctggtgaaag cctcgtcgga catgcccacc acgacgcgcc ccagatagtc
      841 gtcggtagtg ccgtgctcgc ggcggatcgg cgcatggaag atgtccaccc gggaagcggg
      901 ctggtcgacc ctgcgttcga cgtagacgag gatgttctct gcccggtcgc gcacttccag
      961 gaagcgcacg ttgggcgtct gcagggtggc gcgcagcagc gtctccagca cctggacatc
     1021 accgatggcc acgccgtggg ccgtggccgg cgccagctgg ttggccatca gttggccggc
     1081 ctggttgatc tcgtagcgca ggtcctgcag tcgcgtatgg gtgaagaagc cggtcagcaa
     1141 cagggtcagc agcagggccg ggccgacgct gatcagctgg gtgcgggtat ggatgtccca
     1201 cttgcggccg aacatcagac gccgccccaa acgctgcgga gagggtggac gggggcgggc
     1261 ggggaggagg gatgaacgcg cacggaacgg ccttgttctc tctggcatga caggcgcatg
     1321 ttaaccgaga agcccggctt tgccagtgcg cgggtcacgc gcaggactgg ccggtcggcc
     1381 gagccttcgt gataatgcgg catccgcctt cgatggcccg tttggatttc ctatgaccga
     1441 gcaactaccc gttgcagtac tgggcggcgg cagcttcggc accgctctcg ccaatctcct
     1501 ggccgccaac ggccagcgcg tcctgcaatg gatgcgtgat cccgagcagg ccgaggccat
     1561 gcgcacgcgg cgcgagaacc cgcgctacct caagggcatc aagctgctgc ccggcatcga
     1621 gccggtcacc gacctgccgg ccacgctggc cgcctgcgag ctggtgttcg tcgcgctgcc
     1681 gtcgtcggcg ctgcgccagg cgctgcaacc gttggccaca ggcctcgccg gcaagctggt
     1741 ggtgagcacc accaagggca tcgaggccga gagcttcaag ctgatgagcc agatcctcgc
     1801 cgaggtggcg ccgcaggcgc gcatcggtgt gctgtccggg cccaacctgg cccgcgagat
     1861 cgccgaacac gcgctgaccg ccacggtcat cgccagcgag gacgaagcgc tctgcgagcg
     1921 ggtgcagtcc gcgctgcacg gccgtacctt ccgcgtctac gccagccgcg acagcttcgg
     1981 cgtcgagctg ggcggtgcgc tgaagaacgt ctacgccatc atcgccggca tggccgccgc
     2041 gctgggcatg ggcgagaaca ccaagagcat gctgatcacc cgtgccctgg ccgagatgac
     2101 ccgcttcgcc gtcacgctcg gcgccaatcc catgaccttc ctcggcctgg ccggggtggg
     2161 cgacctgatc gtcacctgtt cctcgccgaa gagccgcaac taccaggtcg gctacgccct
     2221 gggcgagggc ctgtcgctgg aggacgcggt ggcgcgcctg ggcgaggtgg cggaaggcgt
     2281 caacaccctc aaggtgctga agaacaaggc cgaggagctg caggtctaca tgcccctggt
     2341 ggccggcctg catgccatcc tgttcgaggg gcgcacgctg gatcaggtga tccaggcgct
     2401 gatgcgtggc gagcccaaga ccgacgtaga cttcatttcc cctagcggct tctgagaagg
     2461 agagcggcat gagcaacgaa accaaggaac tggaacgcga atccatcgcc ctgcgcattc
     2521 tgtggatggt ga
//
LOCUS       DATIHC010000551         1509 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13094, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000551 DATIHC010000000
VERSION     DATIHC010000551.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13094"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..196
                     /locus_tag="VLF16_09015"
     CDS             <1..196
                     /locus_tag="VLF16_09015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017641345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71061.1"
                     /translation="IQGDEVLTLKFDCKPCEMHIIGKMKGHILHQPQPGSAAHSKMVA
                     SISPEDLLKTIRNKPTGYSH"
     gene            complement(400..888)
                     /locus_tag="VLF16_09020"
     CDS             complement(400..888)
                     /locus_tag="VLF16_09020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017518441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2938 domain-containing protein"
                     /protein_id="HSX71062.1"
                     /translation="MAVEMIVQAIVLGIGATLVMDGWALARRRFFGVPALDYGLVGRW
                     LGYMRHGRFRHAAIGKAQSMRGERPLGWAFHYLTGLAFAGAFLALLGGEWLQRPTLWP
                     SLAFGALTVAAPLLLMQPAFGMGIAAARTANPWQVRSRALLTHLVFGLGLYLTGCLLA
                     LF"
     gene            962..1396
                     /locus_tag="VLF16_09025"
     CDS             962..1396
                     /locus_tag="VLF16_09025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003445988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSX71063.1"
                     /translation="MKEMDIGKVARWSGLPASTLRYYEEKGLIRSIGRNGLKRVFGES
                     VLQRLSLIALGRTAGFSLDDIAAMLAAENGPAIDRQLLEDKADQLDLTIRRLSAIRDG
                     LRHAAVCPAENHLACPKFQRLMGIAAKQAAKNKHAPAVPEKR"
     gene            complement(1393..>1509)
                     /locus_tag="VLF16_09030"
     CDS             complement(1393..>1509)
                     /locus_tag="VLF16_09030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HSX71064.1"
                     /translation="RQAFAEHTALPHMREFSERRMDYLRRDFEIREIEMLSA"
BASE COUNT          300 a          536 c          472 g          201 t
ORIGIN      
        1 gatccagggc gacgaggtgc tgaccctgaa attcgactgc aagccgtgcg agatgcacat
       61 catcggcaag atgaagggcc atatcctcca ccagccgcaa ccgggcagcg cggcccacag
      121 caagatggtc gccagcatca gcccggaaga cctgctcaag accatccgca acaagccgac
      181 cggctacagc cactaggccg cggcagcccg gatacaatct gggctacaac tgagccatta
      241 gcccgcccat cagcggtagc ccggatgcag tccgggaaat gccccgcccc ggattgcatc
      301 cgggctacgc cagccagctc ccgcgccgca aggcatctgg cgtaggtggg ccacgcttca
      361 tcgacccacc aggcggagca cctgcttctt gccatgccgc tagaacagcg ccagcaagca
      421 gcccgtcagg tacaggccca ggccgaagac caggtgggtg agcagcgccc gcgagcgaac
      481 ctgccagggg ttcgccgtgc gcgccgcggc gatgcccatg ccgaacgccg gctgcatcag
      541 cagcagcggc gcggccacgg taagcgcgcc gaacgccagc gacggccata gcgtgggccg
      601 ctgcagccat tcgccgccga gcaatgccag aaacgccccg gcgaaggcca gcccggtcag
      661 gtagtgaaag gcccagccca gcggccgctc gcctcgcatc gactgcgcct tgccgatggc
      721 tgcgtggcgg aagcggccgt ggcgcatata ccccagccag cgcccgacca gcccatagtc
      781 cagcgccggc acgccgaaga aacgccgccg cgccagcgcc cagccatcca tcaccagcgt
      841 cgcgccaata cccagaacga ttgcctgcac gatcatctcg actgccatac ccacctccat
      901 ctaccctgtc tgaaagcctg caaagcaagg ctgccagttg aagtcgactt gaggtcaagc
      961 gatgaaagag atggatatcg gcaaggtcgc gcgctggtcc ggcctgccgg cctcgaccct
     1021 gcgctactac gaggaaaagg ggctgatccg ctccatcggc cgcaatggct tgaagcgggt
     1081 gttcggcgag tcggtgctgc aacggctgtc gctgatcgcc ctggggcgca cggccgggtt
     1141 ctcgctggac gatatcgccg cgatgctggc ggccgagaac ggtccggcca tcgaccggca
     1201 gttactggaa gacaaggccg atcagctgga cctgaccatc cggcgcctgt ccgccatccg
     1261 cgatggcctg cgccacgccg cggtctgccc agccgagaat cacctggcct gccccaagtt
     1321 ccagcgcctg atgggcatcg ccgccaagca ggcggcgaag aacaagcacg caccggccgt
     1381 gccggagaag cgttaagcgc tgagcatctc gatctcgcgg atctcgaaat cgcggcgcag
     1441 gtaatccatg cgccgctcgc tgaactcgcg catgtgcggc agggccgtgt gctcggcgaa
     1501 ggcctgccg
//
LOCUS       DATIHC010000552         2084 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_20187, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000552 DATIHC010000000
VERSION     DATIHC010000552.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2084
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20187"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1827)
                     /gene="rpoB"
                     /locus_tag="VLF16_09035"
     CDS             complement(<1..1827)
                     /gene="rpoB"
                     /locus_tag="VLF16_09035"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252960.1"
                     /note="DNA-dependent RNA polymerase catalyzes the
                     transcription of DNA into RNA using the four
                     ribonucleoside triphosphates as substrates; beta subunit
                     is part of the catalytic core which binds with a sigma
                     factor to produce the holoenzyme; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HSX71065.1"
                     /translation="MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQQGVS
                     KEQFRDVGLHAAFKSVFPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRV
                     KVRLIIFDKESSNKAIKDIKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVF
                     FDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDAVFVRIDRRRKLPASVLLRALG
                     YSTEEVLDLFYDTNVFHVKGENLNLELVPQRLRGEIAAFDIKDEKGKVIVEQGRRITA
                     RHINQIDKAGLKELEVPLEYVLGRTTAKAIVHPATGEIVAECNTELTTDLLAKIVKAQ
                     VVRIETLYTNDIDCGPFISDTLKIDSTGNQLEALVEIYRMMRPGEPPTKDAAETLFNN
                     LFFSAERYDLSAVGRMKFNRRIGRSEIEGSGVLSREDIVDVLKTLVDIRNGKGIVDDI
                     DHLGNRRVRCVGEMAENQFRVGLVRVERAVKERLSMAESEGLMPQDLINAKPVAAAVK
                     EFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPI
                     ETPEGPNIGLINSLAAYARTNQYGFLESPYRVVKETQVTDEIV"
BASE COUNT          381 a          601 c          666 g          436 t
ORIGIN      
        1 cacgatctcg tcggtgacct gggtttcctt caccacgcgg tacgggcttt ccaggaagcc
       61 gtactggttg gtgcgggcat aggcggccag ggagttgatc agaccgatgt tcggaccttc
      121 aggggtctcg atcgggcaca cgcgaccgta gtgggtcggg tgtacgtcgc ggacttcgaa
      181 gccggcgcgc tcacgggtca gaccgcccgg gccgagtgcg gagacgcggc gcttgtgggt
      241 gatctcggag agcgggttgt tctggtccat gaactgcgag agctggctgg aaccgaagaa
      301 ctccttcacc gccgccgcaa ccggcttggc gttgatcagg tcctgcggca tcaggccttc
      361 gctttcggcc atcgacagac gctctttaac ggcgcgctcg acgcggacca ggcccacacg
      421 gaactggttc tcggccatct cgccgacgca acgtacgcga cggttaccca ggtggtcgat
      481 gtcgtcgacg atgcccttgc cgttacggat gtcgaccagg gtcttcagca cgtcgacgat
      541 gtcttctctg gacagaacgc cggagccttc gatctcgctg cgaccgatgc gacggttgaa
      601 cttcatgcgg ccaacggcgg acaggtcgta acgctcggcg ctgaagaaca ggttgttgaa
      661 cagggtctcg gcagcgtcct tggttggcgg ctcgccagga cgcatcatgc ggtagatctc
      721 gaccagggct tccagttggt tgccggtgga gtcgatcttc agcgtgtcgg agatgaacgg
      781 accgcagtcg atgtcgttgg tgtacagggt ctcgatgcgg acgacctggg ccttgacgat
      841 cttggccagc aggtcggtgg tcagctcggt gttgcactcg gcaacgatct caccggtggc
      901 cgggtggacg atggccttgg cagtggtgcg acccagtacg tactcgagcg gaacttccag
      961 ctccttgagg ccggccttgt cgatctgatt gatgtggcgc gcggtgatac ggcggccctg
     1021 ctcgacgatg accttgcctt tctcgtcctt gatgtcgaac gcggcgattt cgccacgcag
     1081 gcgctgcggc accagttcca ggttgaggtt ctcacctttc acatggaaga cgttggtgtc
     1141 gtagaacagg tccagcacct cttcggtgct gtagcccagg gcgcgcagca ggacggaggc
     1201 cggcagcttg cggcgacggt cgatacggac gaagacggcg tccttcgggt cgaactcgaa
     1261 gtccagccag gagccgcggt agggaatgat gcgcgcggag tacagcagct tgccggagct
     1321 gtgagtcttg ccacggtcgt ggtcgaagaa cacacccggg gagcggtgca gctgggaaac
     1381 gatcacacgc tcggtaccgt tgatgatgaa ggtaccgttc tcggtcatga gcggaatttc
     1441 gcccatgtag acttcttgct ctttgatgtc cttgatcgct ttgttcgacg attctttgtc
     1501 gaagatgatc aggcggactt taacgcgcag cggcacggcg aaggtcacgc cacgcagcac
     1561 gcactccttg acgtcgaatg cgggctcgcc caggcgatag ccgacgtact ccagggcagc
     1621 gttgccggag tagctgatga tcgggaatac ggacttgaag gccgcatgca ggccaacgtc
     1681 gcggaactgc tccttgctca ctccttgctg caggaattcg cggtacgaat ccaactggat
     1741 ggccaggaga taaggcacat ccatcacgtc cggcaacttg ctaaagtcct tgcggatacg
     1801 ttttttctca gtgtatgagt aagccatcag cgttccccag cttggtcacc tgcttgtttg
     1861 gctcctcccg acgggagcag ccagaaaatc ttgcgaatcc cttgattcgc accgcccacc
     1921 gagcggttct ttccgtacta gcggccaacg agcatcaggc agctataacg gaaaaaggcc
     1981 ggtggcaaaa gccaccagcc atcagcctta cgcgagtcgc ttcggctgta gacgcaaggt
     2041 cgtgcttact tgagctcgac cttggcgcct gcttcttcca gagc
//
LOCUS       DATIHC010000553         3023 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_6346, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000553 DATIHC010000000
VERSION     DATIHC010000553.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3023
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6346"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..188
                     /locus_tag="VLF16_09040"
     CDS             <1..188
                     /locus_tag="VLF16_09040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71066.1"
                     /translation="PGLFAGLPDVWLAFVLGFSAGAVLCMLVDSMIPEAFAETHALTG
                     LITLSGFMTALALDKVF"
     gene            246..941
                     /gene="pyrF"
                     /locus_tag="VLF16_09045"
     CDS             246..941
                     /gene="pyrF"
                     /locus_tag="VLF16_09045"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019396006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0044205 - 'de novo' UMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HSX71067.1"
                     /translation="MSCQTPIIVALDFPSRDAALALADQLDPKLCRVKVGKELFTSCA
                     AEIVSTLRDRGFEVFLDLKFHDIPNTTAMAVKAAAEMGVWMVNVHCSGGLRMMAACRE
                     TLEQFNGPKPLLIGVTVLTSMEREDLAGIGLDVEPQEQVLRLAGLAAKAGMDGLVCSA
                     QEAPALKIAQPALQLVTPGIRPAGSASDDQRRILTPAQALQAGSDYLVIGRPISQAAD
                     PAKALADIVAQLG"
     gene            1090..1719
                     /locus_tag="VLF16_09050"
     CDS             1090..1719
                     /locus_tag="VLF16_09050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020299189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSX71068.1"
                     /translation="MSMTFSGKVALVTGGAAGIGRTTALAFAAEGLQVVAAFGRLDYA
                     FNNAGIEIEKGKLADGDEAVFDAIMGVNVKGVWLCMKHQLPLLLAQGGGAIVNTASIA
                     GLGAAPKMSIYAASKHAVIGLTKSAAVEYAKKKIRVNAVCPAVIDTDMFRRAYEADPK
                     KAEFVAAMHPVGRIGKPEEIAAAVLYLCSDAAAFTTGHSLAVDGGATAI"
     gene            1849..2748
                     /locus_tag="VLF16_09055"
     CDS             1849..2748
                     /locus_tag="VLF16_09055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003461028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
                     /protein_id="HSX71069.1"
                     /translation="MTASALTTTFLPIALGIIMLGLGLSLTLADFARVVKFPKPVLIG
                     LGCQLLLLPLVCFLIAKGFGLAPALAVGLMLLAASPGGTSANLYSHLAHGDVALNVTL
                     TAVNSVVAILTMPFIVNLSLAHFMEGDQAIPLQFAKVVQVFAIVLGPVAIGMIIRKLA
                     PGFAQAMEKPVKIISALFLVLVIVLAFVKDWQTVLDYAPLVGLAALLFNLISLAVGYG
                     VPRLMKLPRRQAIAIGMEIGIHNGTLAIALALSPMLLNNATMAVPAAIYSFIMFFTAA
                     AFGWWVNFAHGKELAAEDVQTAG"
     gene            complement(2832..>3023)
                     /locus_tag="VLF16_09060"
     CDS             complement(2832..>3023)
                     /locus_tag="VLF16_09060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020292876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042925 - benzoate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0042919 - benzoate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="benzoate/H(+) symporter BenE family transporter"
                     /protein_id="HSX71070.1"
                     /translation="ALALLGSIGNGLAQAMSAPAERDAALITFMITASGMTLLGIGSA
                     FWGLIGGAVTLLILNGRRG"
BASE COUNT          473 a         1049 c          972 g          529 t
ORIGIN      
        1 ggccggggct gttcgccggg ctgccggatg tctggctggc cttcgtcctc ggcttttccg
       61 ccggcgccgt gctgtgcatg ctggtggaca gcatgattcc cgaggccttc gccgagaccc
      121 acgcgctgac cgggctgatc accctgagcg gcttcatgac cgcgctggca ctggacaagg
      181 tgttctgacc acggccgcgg cttccgctac aatgcgcggc gttttcagcc cgccgtgagc
      241 ccgccatgtc ctgccagacc ccgatcatcg ttgccctcga tttcccttcc cgtgatgccg
      301 ccctggcgct ggccgaccaa ctcgacccga agctgtgccg ggtcaaggtg ggcaaggagc
      361 tgttcaccag ctgcgccgcg gaaatcgttt cgaccctgcg tgatcgcggc ttcgaggtgt
      421 tcctcgacct gaaattccac gacatcccca acaccaccgc catggcggtg aaggcggcgg
      481 cggagatggg tgtatggatg gtcaacgtgc attgctccgg cggcctgcgc atgatggcgg
      541 catgccgcga gacgctggaa cagttcaacg gcccgaagcc gctgctgatc ggcgtgaccg
      601 tgctgaccag catggagcgt gaggacctgg ccggcatcgg cctggacgtg gagccgcagg
      661 agcaggtgct gcgcctggcc ggcctggcgg ccaaggccgg catggacggg ctggtgtgct
      721 cggctcagga ggcgccggcg ctgaagatcg cccagccggc gctgcagctg gtcacccccg
      781 gcatccgtcc ggccggcagc gccagcgacg accagcgccg catcctcacc ccggctcagg
      841 ccctgcaggc cggctccgac tacctggtga tcggccgtcc gatcagccag gccgccgacc
      901 cggccaaggc cctggccgat atcgtcgcgc agctgggctg accccgtctg catccagaag
      961 agtgatgaag cgccggtagg cttcatcatt cctttggatg atccggcaca tcgcactctg
     1021 atagtgctgc tcgcccgcgg tcgcgctggc tagacttccg ctcatttcca ctcctgcgag
     1081 gatgcagaca tgagcatgac tttctcgggc aaggtcgccc tggtcaccgg cggcgccgcc
     1141 ggcatcggcc gtaccaccgc gctggcattc gctgccgaag gcctgcaggt ggtggcggcc
     1201 ttcgggcggc tggactacgc cttcaacaac gccggcatcg agatcgagaa aggcaagctg
     1261 gccgacggcg acgaggccgt gttcgacgcc atcatgggcg tcaacgtcaa gggtgtgtgg
     1321 ctgtgcatga agcaccagct gccgctgctg ctggcccagg gcggcggcgc catcgtcaac
     1381 accgcctcca tcgccggcct cggcgcggcg ccgaagatga gcatctacgc cgcctccaag
     1441 cacgcggtca tcggcctgac caagtccgcc gcggtcgagt acgcgaagaa gaagatccgc
     1501 gtcaacgccg tgtgcccggc ggtgatcgac accgacatgt tccgccgtgc ctacgaggcc
     1561 gacccgaaga aggccgagtt cgtcgccgcc atgcacccgg tcggccgcat cggcaagccg
     1621 gaggaaatcg ccgccgcggt gctgtacctg tgcagcgatg cggccgcctt caccaccggc
     1681 cacagcctgg ccgtggacgg cggggccact gcgatctgaa gagacaaggg cgccgcgagg
     1741 cgctcttttt cgttggcgcc caggtaatca tttggcacac aaagccagtt acatgggctg
     1801 gccgactcgt caagaatcgc cgctggatcg ttccggagaa caataacaat gaccgcaagt
     1861 gccttgacca ccacgttcct tcccatcgcc ctgggcatca tcatgctcgg cctgggcctg
     1921 tcgctgaccc tggcggactt cgcccgggtg gtgaaatttc ccaagccggt gctgatcggc
     1981 ctgggctgcc aactgctcct gctgccgctg gtgtgcttcc tcatcgccaa gggcttcggc
     2041 ctggcgccgg ccctggcggt cggtctcatg ttgctggccg cctcgcccgg cggcacctcg
     2101 gccaacctct acagccacct ggcccacggc gacgtggcgc tgaacgtaac cctcaccgcg
     2161 gtcaactcgg tggtggccat cctcaccatg cccttcatcg tcaacctgtc gctggcccat
     2221 ttcatggagg gcgaccaggc cattccgctg cagttcgcca aggtggtgca ggtgttcgcc
     2281 atcgtcctcg gcccggtggc catcggcatg atcatccgca agctggcccc aggcttcgcc
     2341 caggccatgg agaagccggt gaagatcatc tccgcgctgt tcctggtgct ggtcatcgtc
     2401 ctggccttcg tcaaggactg gcagaccgtg ctggattacg ccccgttggt gggcctggcc
     2461 gcgctgctgt tcaacctgat cagcctggcc gtcggctacg gcgtgccgcg cctgatgaag
     2521 ctgccgcggc gccaggcgat cgccatcggc atggagatcg gcatccacaa cggcaccctg
     2581 gccatcgccc tggcgctcag cccgatgctg ctgaacaacg ccaccatggc ggtgccggcg
     2641 gcgatctaca gcttcatcat gttcttcacc gccgcggcct tcggctggtg ggtcaacttc
     2701 gcccacggca aggagctggc ggccgaggat gtgcagacgg ccggctgatt cgcttccgca
     2761 aatgaaaacg cctgggtcat gcccaggcgt tttcatttca gccctcggtg cgttttctca
     2821 ccaaacgagg ctcatccccg gcgcccgttg aggatcagca gtgtcacggc gccgccgatc
     2881 aggccccaga aggccgagcc gatgcccagc agggtcatgc ccgaggcggt gatcatgaag
     2941 gtgatcagcg ccgcgtcgcg ctccgccggc gcgctcatcg cctgggccag gccgttgccg
     3001 atcgaaccga gcagggcgag cgc
//
LOCUS       DATIHC010000554         3387 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_14925, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000554 DATIHC010000000
VERSION     DATIHC010000554.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3387)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3387)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3387
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14925"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..407)
                     /locus_tag="VLF16_09065"
     CDS             complement(<1..407)
                     /locus_tag="VLF16_09065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008073631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71071.1"
                     /translation="MASEMQLSLVAGLLRRGRGLDLLSNALTLLALAYGLAPLLGTPP
                     SATGGVLCGLLVMLGLAQKYWAVRVALDAELFARLANDAARLAEHTTDLDQALQVLGL
                     QPATTQPRDWQERCRGALRLLRLQAAWLIAQLLL"
     gene            complement(397..1740)
                     /locus_tag="VLF16_09070"
     CDS             complement(397..1740)
                     /locus_tag="VLF16_09070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003241949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2/dual specificity phosphatase
                     family protein"
                     /protein_id="HSX71072.1"
                     /translation="MDAPAARESGLWKRGVLWLLLLGPLFFASYGFANWFTSQRDDVG
                     SLVFAWEGATPLWAWTIVPYWSIDLLYGLSFLLPITRREMDRHALRLLSTQLICVACF
                     LLWPLRFTFERPELSGFFGWMFDVLMGFDKPFNQAPSLHIALLVVIWVMFARHTRGAL
                     LRVLLHGWMALIGLSVLTTWQHHFIDVPTGILAGWLCVWLWPVEGRSPLQQLRLAREP
                     QRWRLALRYGLASAVCAALAVNLGGAWLWLLWPCASLLLVALNYALFGAAGFQKRADG
                     SLGAASSWMLAPYLLGAWINSRLWTRKHPQPDQVVEVIWLGRVPSATEAAPFAAVLDL
                     SAELPVRLTGKAYRNLPLLDLVAPDAEACRQGAELIEELRQQGPLLVCCALGYSRSAT
                     LVAAWLLHSGRASSVEQAIELICTARPQIVLGEPQRRALDSLLQPIASPEMAHGL"
     gene            complement(1740..>3387)
                     /locus_tag="VLF16_09075"
     CDS             complement(1740..>3387)
                     /locus_tag="VLF16_09075"
                     /EC_number="2.1.1.-"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional alpha/beta hydrolase/class I
                     SAM-dependent methyltransferase"
                     /protein_id="HSX71073.1"
                     /translation="MFHRGHEHGGRIAHLPAELDLPDYDFFAWDARGHGLSPGARGDS
                     PSFTTSVRDVQTFLDHISATHAIEQTEMAVLAQSVGAVIISTWAHDYAPKVRCLVLAS
                     PAFKVKLYVPLARPGLKLLRQWRGNFFVNSYVKARFLSHDPERIASFENDPLITRPIS
                     VNMLLGLYDAAERVVADAQAIQVPTQLLISGADFVVHRQPQEQFFERLGSLRKEKHIL
                     PGFFHDTLGERDRGHALSRARRFILESFEQPAERPSLLDADRCGWSCAEAESLAAPLP
                     RNSFADLYWRATRAGLKLGNGLSDGVKLGFATGFDSGSTLDYVYRNQPSGKSALGRLI
                     DANYLNSTGWRGIRQRKVHAEELLRLAMGRLREAGRAVRIVDIAAGHGRYILESLEGL
                     EHKPDAILLRDYSDINVRDGSALIEQKGLGDIARFVKGDAFDKADLAALDPKPTLAVV
                     SGLYELFGNNQMVGDSLAGLAAAVEEGGYLVYTGQPWHPQLELIARALTSHRQGQAWV
                     MRRRSQAEMDQLVEAAGFRKLEQRIDEWGIFSVSLAQRVS"
BASE COUNT          607 a         1093 c         1193 g          494 t
ORIGIN      
        1 agcagcagct gtgcgattag ccaggcggcc tgcaggcgca gcaggcgcag ggcgccgcgg
       61 cagcgttcct gccagtcacg tggttgggta gtagcgggct gcaggccgag aacctgcagc
      121 gcctggtcca ggtcggtggt gtgttcagcg agacgcgcgg catcgttggc cagccgggcg
      181 aagagctcgg cgtccagcgc cacgcggacg gcccagtact tctgcgccaa gcccagcatc
      241 accagcaggc cgcagagcac gccgccggtg gcgctgggtg gcgtgccgag cagtggcgcc
      301 aggccgtagg ccaaggccag tagcgtcagc gcattggata gcaggtccag gcctcggcca
      361 cggcgcagca ggccggcgac caggctgagt tgcatctcag aggccatgcg ccatctccgg
      421 gctcgcaatg ggttgcagca agctatccag agcgcgacgc tgcggctcgc cgagaacgat
      481 ctgcgggcgc gcggtgcaga tcagctcgat ggcctgctcg acgctactgg cgcgaccgct
      541 gtgcaacagc caggcggcca ccagggtggc gctgcgcgaa tagccgaggg cgcagcagac
      601 cagcaatggg ccctgttggc gcaactcctc gatcagctcg gcgccctggc ggcaggcctc
      661 cgcatcgggg gcgaccagat ccagcagcgg cagattgcga taggccttgc cggtcaggcg
      721 aaccggcagc tcggcgctca gatccaatac ggcagcgaag ggcgcggctt cagtcgcgct
      781 cggtacacgg ccgagccaga taacctctac cacctgatcc ggctgcggat gcttgcgcgt
      841 ccacagccgc gaattgatcc aggcacctag caggtaggga gcaagcatcc agctgctggc
      901 agccccgagc gagccgtcgg cgcgcttctg aaagccggcc gcgccgaaga gcgcatagtt
      961 cagggcgacc agcagcagcg aggcgcaggg ccacagcagc cacagccagg ctccacccag
     1021 attgaccgcc agcgccgcgc agacagcact ggccaatcca tagcgcaggg ccaggcgcca
     1081 gcgctgtggc tcgcgcgcca ggcgcagctg ctgcagtggg ctgcggcctt cgactggcca
     1141 gagccatacg cacagccagc ctgcgagtat gccggtgggc acgtcgatga aatgatgctg
     1201 ccaggtggtc agtaccgaca gaccgatcag cgccatccag ccatgcagca ggacgcgcag
     1261 cagcgcgccg cgggtgtgcc gggcgaacat cacccagatc accaccagca gggcaatgtg
     1321 cagcgaaggc gcctggttga acggtttgtc gaagcccatc agcacgtcga acatccagcc
     1381 aaagaagccg ctcagctccg gacgttcgaa ggtgaagcgc aatggccaga gcaggaagca
     1441 ggcgacgcaa atcagctggg tgctgagcag tcgcagggca tgccggtcca tctcgcggcg
     1501 ggttatcggg agcaggaagg acaggccgta gagcaggtcg atcgaccagt agggcacgat
     1561 ggtccaggcc cacagtggcg tcgcgccttc ccaggcgaat accaagctgc cgacatcgtc
     1621 gcgctgggag gtgaaccagt tggcgaagcc atagctggcg aagaacagcg ggccgagcag
     1681 caatagccag agaaccccgc gtttccataa cccgctttcg cgggcggcgg gggcgtccat
     1741 caggacaccc gctgggccag ggacacgctg aagatgcccc attcatcgat gcgctgctcc
     1801 agcttgcgga agccggcggc ttccaccaac tggtccatct ccgcctggct gcgccggcgc
     1861 atgacccagg cctggccctg gcgatggctg gtcagggcgc gggcgatcag ctccagctgc
     1921 gggtgccagg gctggccggt gtagaccagg tagccgccct cctcgaccgc cgcggccagc
     1981 ccggccagcg agtcgccgac catctggttg ttgccaaaca gttcatagag gccggagacc
     2041 accgccagcg tcggcttggg atcgagggcg gcgagatcgg ccttgtcgaa ggcatcacct
     2101 ttgacgaagc gggcgatgtc gcccagcccc ttctgctcga tcagcgcact gccgtcgcgc
     2161 acattgatat cgctgtagtc gcgcagcagg atcgcgtccg gcttgtgttc aagcccttcc
     2221 agcgactcga ggatatagcg gccatggccg gcggcgatat cgacgatgcg caccgccctg
     2281 cccgcctcgc gcagccggcc catggccagg cgcagcaact cttcggcgtg caccttgcgc
     2341 tggcgaatgc cgcgccagcc ggtggagttg aggtagttgg cgtcgatcag gcggcccagc
     2401 gcggacttgc cggacggctg gttgcggtag acgtagtcca gggtgctgcc ggaatcgaag
     2461 cccgtagcga agccgagctt cacgccgtcg gacagtccgt tgccgagttt caggccggcg
     2521 cgggtggcgc gccagtagag atcggcgaag gaattcctgg gtagcggcgc ggccaggctc
     2581 tcggcctccg cgcagctcca gccgcagcgg tcggcatcca gcagcgaggg gcgctcggcc
     2641 ggctgttcga agctctccag gatgaagcgc cgcgcacggc tcaatgcatg gccgcggtcg
     2701 cgctcgccga gggtgtcgtg gaagaagccg ggcaggatgt gcttttcctt gcgcaggctg
     2761 cccaggcgct cgaagaactg ctcctgcggc tggcgatgca cgacgaagtc ggcgccggag
     2821 atcagcagct gggtcggcac ctggatcgcc tgggcgtcgg ccaccacgcg ctcggcggcg
     2881 tcgtacaggc cgagcagcat gttcaccgag attggccggg tgatcagcgg gtcgttctca
     2941 aaagaggcga tgcgctcggg atcgtggctg aggaagcgcg ccttcacgta gctgttgacg
     3001 aagaagttgc cgcgccactg gcgcagcagc ttcaggcccg gacgggctaa gggcacgtaa
     3061 agcttgacct tgaatgccgg cgaggccaat accaggcagc gcaccttcgg ggcgtaatcg
     3121 tgagcccaag tgctgatgat caccgcgccg acgctctgcg ccagcacggc catctccgtc
     3181 tgctcgatag cgtgggttgc gctgatatgg tcgaggaagg tctgcacgtc acgcacgctg
     3241 gtggtgaagc tcgggctgtc gccacgggcg cctggcgaga ggccgtgacc gcgggcatcc
     3301 caggcgaaga agtcgtagtc gggcaggtcc agctcggcgg gcaggtgggc tatgcgtccg
     3361 ccgtgctcgt ggccgcggtg gaacatc
//
LOCUS       DATIHC010000555         3056 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34207, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000555 DATIHC010000000
VERSION     DATIHC010000555.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3056
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34207"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1005
                     /locus_tag="VLF16_09080"
     CDS             <1..1005
                     /locus_tag="VLF16_09080"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010455194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="HSX71074.1"
                     /translation="ENALARGDDGLQRAVRLQRIGDYLLLRPAQSDAERFQRSQYFAR
                     IGTWDWDIDTNRLYWSEAIYAMFGHAVGAVTPSYELFCRSVHPDDREHVRAGELRCIA
                     TGENHDEEYRVVWPDGTVRWLRETGNVVKDEDGTPVKMMGVVRDITEEKAWASQMHRL
                     AHHDPLTGLPNRLVFEERLAGALERARRGRTRVALVFIDLNDFKTINDQLGHRAGDQV
                     LMATAERLRTTLRGSDCVARLGGDEFVAVLEGLSAERSPEEEGQAIADKLLAALSPPV
                     QMDGEAQRIGISLGIALFPEHAPNMDRLIHIADQAMYEAKRSGDNQYRLGQAPRTRSE
                     "
     gene            complement(1006..1299)
                     /locus_tag="VLF16_09085"
     CDS             complement(1006..1299)
                     /locus_tag="VLF16_09085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013715667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1883 domain-containing protein"
                     /protein_id="HSX71075.1"
                     /translation="MKFIHQREFLHEGDTVVIHCSQPCNIRLMNDANFRSFKNGGRHT
                     YHGGAFDRFPARIKVPSDGFWNVTLDTVTRRAISVTRKPQMEYTIKFIRRSGA"
     gene            1434..2036
                     /locus_tag="VLF16_09090"
     CDS             1434..2036
                     /locus_tag="VLF16_09090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71076.1"
                     /translation="MNAPRLVCLCLAAAFTLGCQSHGDDELTTDYSRTDVYAEGVPGG
                     AVLETEELTARVSAVDTAKRTFTLQDTQGNRRTFHAPAQMQNFDQLKTGDQVRAVVTQ
                     ERVVYLRQPGEPLEDGAVGIVASAAPGDKPGMLAADTVEITALVKGMDTTLRTVTLQM
                     PDGRERVIPVRPDVDMKTAYLGRQVVLRVTTAVAVSVEPQ"
     gene            2033..2368
                     /locus_tag="VLF16_09095"
     CDS             2033..2368
                     /locus_tag="VLF16_09095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012703040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HSX71077.1"
                     /translation="MSQPPEPVNLLQAIPDPAAQEQFVPLLREGGLLLEQIVSHGKAS
                     PEGFWYDQSQPEWVALLRGTARLEFDDGARPLVAGDALLIPAGCRHRVAECSPDAVWL
                     ALHLQATPE"
     gene            2491..>3056
                     /locus_tag="VLF16_09100"
     CDS             2491..>3056
                     /locus_tag="VLF16_09100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HSX71078.1"
                     /translation="MRISDIHQRLADLGALPAHSGRVVRAWLQGKPLNTGTRRQHTEH
                     FLPLSVRNGLPQLSDELEGLARVRSEHPAADGSVRLLVELNDGQMVESVLLPRDGLCV
                     STQVGCAVGCVFCMTGKSGLLRQVSSAEIVAQVALARRRRPVKKVVFMGMGEPAHNLD
                     NVLEAIDLLGTDGGIGHKNLVFSTVGDPR"
BASE COUNT          503 a         1063 c         1078 g          412 t
ORIGIN      
        1 gaaaacgcgc tggccagggg cgacgacggc ctgcagcgcg ccgtgcggct gcagcgtatc
       61 ggcgattacc tgttgctgcg cccggcgcag agcgacgccg aacgcttcca gcgcagccag
      121 tatttcgccc gcatcgggac ctgggactgg gacatcgaca ccaaccgcct gtactggtcc
      181 gaggccatct acgccatgtt cggccacgcg gtcggcgcgg ttacgcccag ctacgagctg
      241 ttctgccgca gcgtgcaccc ggacgaccgc gagcacgtgc gcgccggcga actgcgctgc
      301 atcgccaccg gcgagaatca cgacgaggaa taccgggtgg tctggccgga cggcacggtg
      361 cgctggctgc gcgagaccgg caacgtggtg aaggacgagg acggcacgcc ggtgaagatg
      421 atgggcgtgg tccgcgacat caccgaggaa aaggcctggg ccagccagat gcaccgcctg
      481 gcccatcacg acccgctgac cggcctgccc aatcgcctgg tgttcgagga gcgcctcgcc
      541 ggcgccctgg agcgcgcgcg ccgcgggcgg acacgggtgg cgctggtgtt catcgacctc
      601 aacgacttca agacgatcaa tgaccagctc ggccaccgcg ccggcgatca ggtgctgatg
      661 gccaccgccg aacgcctgcg caccacgctg cgcggctcgg attgcgtggc gcgactgggt
      721 ggcgacgagt tcgtcgcggt cctggaaggg ctgtcggccg agcgctcgcc cgaggaagaa
      781 ggccaggcca tcgccgacaa gctgctggcg gcgctgagcc cgccggtgca gatggacggc
      841 gaggcgcagc ggatcggcat cagcctgggg atcgccctgt tccccgagca cgcgccgaac
      901 atggaccggc tgatccatat cgccgaccag gccatgtacg aggccaagcg cagcggcgac
      961 aaccagtatc gcctgggcca ggcgccgcgc acccgcagcg agtgatcagg cgcccgagcg
     1021 gcggatgaac ttgatggtgt attccatctg cggcttgcgc gtcacgctga tggcgcggcg
     1081 ggtcacggtg tcgagggtga cattccagaa gccgtcgctg ggcaccttga tgcgcgccgg
     1141 aaagcggtcg aaggcgccgc cgtggtaggt gtggcggccg ccattcttga agctgcggaa
     1201 attggcgtcg ttcatcaggc ggatgttgca cggctgcgag caatggatga cgaccgtgtc
     1261 gccctcgtgg aggaactcgc gctggtggat gaatttcatg gtgtgaaacc gggcaggaaa
     1321 agcggtgggc gaagatagca cgagcgccac cacgccgccg agccgctgct aggctggact
     1381 gagcgcaggt gcccgcggcg cctgcggtga cccaacacac gcaaggagcc cccatgaacg
     1441 caccccgcct ggtctgcctg tgcctggcag ccgcattcac actcggctgc cagagccatg
     1501 gcgacgacga actgaccacc gactacagcc gcaccgacgt ctacgccgaa ggcgttccgg
     1561 gcggcgccgt gctcgagacc gaggagctga ccgcccgcgt cagcgccgtc gacacggcca
     1621 aacgcacctt caccctgcag gacacgcagg gcaaccggcg caccttccac gcgccggcgc
     1681 agatgcagaa cttcgaccag ttgaaaaccg gcgaccaggt tcgcgccgtg gtcacccagg
     1741 agcgcgtcgt ctacctgcgc cagccgggag agccgctgga ggacggtgcc gtgggcatcg
     1801 tcgccagcgc ggcgccgggc gacaagccgg gcatgctggc ggcggacacg gtggagatca
     1861 cggcgctggt caagggcatg gacaccaccc tgcgcaccgt gaccctgcag atgcccgacg
     1921 gccgcgagcg cgtcatcccg gtccgcccgg acgtggacat gaagaccgcc tacctcggcc
     1981 gccaggtagt actgcgcgtc accaccgccg tggccgtcag cgtcgagccg caatgagcca
     2041 gccacccgag ccggtcaacc tgctgcaggc catcccggac ccggcggcgc aggagcagtt
     2101 cgtgccgctg ctgcgcgagg gcggcctgtt gctggagcag atcgtctccc acggcaaggc
     2161 cagccccgag ggcttctggt acgaccagtc gcagcccgag tgggtggccc tgctgcgcgg
     2221 cacggcgcgg ctcgagttcg atgatggcgc gcggccgctg gtggccggcg atgccctgct
     2281 gattcccgcc ggttgccggc atcgggttgc cgagtgctcg ccggacgcgg tgtggctggc
     2341 gctgcactta caggccacgc ccgaataacc cggccatgac gcgggccacg cctctcccgg
     2401 cgagaggccg aggggccgcg acatccgccc gccgcaagcg gacaagccga cctacgcgcc
     2461 accggcgccc agtggtagca tgcgcgcccc atgcgaatct ccgatatcca ccagcgcctc
     2521 gccgacctcg gcgccctgcc cgcccacagc ggccgggtgg tgcgcgcctg gctgcagggc
     2581 aagccgctga acaccggcac ccgccgccag cacaccgagc atttcctgcc gctgtccgtg
     2641 cgcaacggcc tgccgcagct gagcgacgag ctggagggcc tggcccgggt gcgctccgag
     2701 cacccggccg ccgacggttc ggtgcgcctg ctggtggagc tgaacgacgg ccagatggtg
     2761 gagagcgtgc tgctgccgcg cgacggcctg tgcgtgtcca cccaggtcgg ttgcgccgtc
     2821 ggctgcgtgt tctgcatgac cggcaagagc ggcctgctgc gccaggtgag cagcgccgag
     2881 atcgtcgccc aggtggccct ggcacgacgc cgccggccgg tgaagaaggt ggtgttcatg
     2941 ggcatgggcg agcccgcgca caacctggac aacgtgctgg aggccatcga cctgctcggc
     3001 accgacggcg gcatcggcca caagaatctg gtgttctcca ccgtcggcga cccgcg
//
LOCUS       DATIHC010000556         2753 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_41442, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000556 DATIHC010000000
VERSION     DATIHC010000556.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2753
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41442"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2753)
                     /locus_tag="VLF16_09105"
     CDS             complement(<1..>2753)
                     /locus_tag="VLF16_09105"
                     /inference="COORDINATES: protein motif:HMM:TIGR01733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HSX71079.1"
                     /translation="GLSFRQLLAEVRRHALDAQDQQDLPFDQLVEALAPERSLGQTPL
                     FQVLFNHQKRDLGALQLPGLRLEPLAQGVPHALFDLALDSLEDSAGQLRLTLTWARER
                     LDDGQMQQMSAHLLGLLEQVSAAPDQPLVRLQLLDDGDQARLAEWNTPRQDFDAARLL
                     PELIAEQARLHPDAIALVHGGDRLTFAELEARANRLAQLLVAHGVRPESRIGVSLERG
                     NAMIVAMLAVLKSGGAFVPLDPDYPRERLSYMVEDSGLKWLITSSDLAERLPPGEGVE
                     PLYLDQLDLNAFEASVPAVQLHPLNLAYLIYTSGSTGQPKGVAVNHLGLSMHVQTIGQ
                     RYGMTADDVELHFASISFDGALERWTVPLAFGSRLVIRDQELWSAEKTCQVIADEGVT
                     ISCLPPSYAQQLLDWVESQSLKLPVRSWTLGGEAFTRETYERLQKVLQPKRIINGYGP
                     TETVVTPLIWEAYPGDSFEAAYAPIGNPVGPRSLYVLDAELNLLPIGVAGELYIGGEV
                     GLARGYFQRPELTAERFLPDPFGAAGERMYRTGDLVRWREDGTLDYLGRVDHQVKIRG
                     FRIELGEIESQLLALDGAQEVAVIARETPSGKQLVGYVVARDNIDANALRAELAKVLP
                     DYMVPAQIIALEKLPLTPAGKLDRAALPEPTWQSQSYEAPQTDNERILAAIWAEVLGV
                     ERVGRQDHFFELGGDSIVALQVVSRVRQQGLQLAPRELFQFPRLAELAQAARAAGEDM
                     AQEPVTGELPLAPIQAHFFAMGQAEPAHWNQALNLELLRPLDPQLLEQALQALVAHHD
                     GLRLRFSQEQGTWRQRYADVNIEQPLLWLREASSAAEAEQLCQQAQQSLDLAAGPLLR
                     ALYLKQAGQADRLLLAVHHLVVDGVSWRILLEDILAAYRQLEAGQTVRLPGKSQSYKG
                     WSEA"
BASE COUNT          474 a          914 c          901 g          464 t
ORIGIN      
        1 gcctcgctcc agcccttgta ggactggctc ttgcccggca ggcgcacggt ctggccggct
       61 tccagctggc gatacgccgc gaggatatct tccagcagga tgcgccagga caccccatcc
      121 acaaccaggt gatgcacggc caacagcagg cgatcggcct ggccagcttg cttcagatac
      181 agcgcgcgca gcagcgggcc tgcagccaga tcgaggctct gctgggcctg ctggcaaagc
      241 tgctcagcct cggcagcgct gctcgcctcg cgcagccata gcagcggctg ctcgatattc
      301 acgtcggcgt agcgctggcg ccaagtgccc tgctcctgac tgaagcgcag gcgcaggccg
      361 tcgtgatggg ccaccagcgc ctgcagtgcc tgttccagca gttgcggatc gagcggacgc
      421 agcagctcca gattgagtgc ctggttccag tgcgccggct cggcctggcc catggcgaag
      481 aaatgcgcct gaatcggtgc cagcggcagc tcgccggtga ccggctcctg cgccatatcc
      541 tcgccagcgg cgcgggccgc ctgggccagt tcggccaggc gtgggaactg gaatagctcg
      601 cgcggcgcca attgcaggcc ttgctggcgt acacgactga ccacctgcag cgcgacgatg
      661 gagtcgccgc ccagctcgaa gaaatggtcc tggcgcccta cccgttccac acccagtacc
      721 tcggcccaga tggcggcgag gatgcgttcg ttgtcggttt gtggtgcctc atagctctgg
      781 ctctgccagg tcggctccgg cagcgcggca cggtccagct tgccggccgg ggtcagcggc
      841 agtttttcca gggcgatgat ctgggctggc accatatagt ccggcaggac cttggccagc
      901 tcggcgcgca gggcattggc gtcgatgttg tcgcgggcga cgacatagcc gaccagctgc
      961 ttgccgctcg gtgtttcgcg ggcgatcacc gccacttcct gcgcgccatc cagtgccagc
     1021 agttggctct cgatctcgcc cagctcgata cggaaaccgc ggatcttcac ctgatggtcg
     1081 acgcgaccga ggtagtccag ggtgccgtct tcacgccagc gcaccaggtc gccggtgcgg
     1141 tacatgcgct cgccggctgc tccgaatgga tcgggcagga agcgttcggc cgtcagttcc
     1201 ggacgctgga aatagccacg ggccagaccg acttcgccac cgatatacag ctcaccagct
     1261 acgccgatgg gcagcaggtt cagctcagca tccagcacat acaggctgcg cgggccgacc
     1321 ggattgccga tcggcgcata ggccgcctcg aaggaatcac cgggataggc ttcccagatc
     1381 agcggggtca ccaccgtctc ggtcgggccg tagccgttga tgatgcgctt gggctgcagc
     1441 accttctgca gacgctcgta ggtctcgcgg gtaaaggctt cgccacccaa ggtccaggaa
     1501 cgcaccggca gtttcagact ctgcgactcg acccagtcca gcagttgctg ggcatagctc
     1561 ggtggcaggc aggagatggt cacgccttca tcggcgatca cctggcaggt cttctcggcg
     1621 ctccacagct cctggtcgcg gatcaccagg cggctgccga aagccagcgg cacggtccag
     1681 cgctccaggg cgccgtcgaa gctgattgag gcgaagtgca gttccacatc atccgcggtc
     1741 atgccatagc gctgaccgat ggtctgcaca tgcatgctca ggccgaggtg attcaccgcc
     1801 acgcccttag gctggccggt ggagccggag gtgtagatca ggtacgccag attgagcgga
     1861 tgcagctgca ctgcaggaac cgaagcctcg aaggcattca gatccagctg atccagatac
     1921 agtggctcga cgccctcacc cggcggcaga cgctcggcca gatcggacga agtgatcagc
     1981 cacttcaagc ccgagtcctc gaccatatag ctcaggcgct cgcgcggata atccgggtcc
     2041 agcggcacga aggcaccgcc agatttcagc accgccagca tggccacgat catcgcgttg
     2101 ccgcgttcca gcgacacacc gatgcgagac tcaggacgta cgccgtgggc taccagtagc
     2161 tgggccagac gattggcgcg tgcctccagt tcggcgaagg tcaggcgatc gccgccatgt
     2221 accaaggcga tggcatccgg atgcaggcgg gcctgctcag cgatcaattc gggcagcaag
     2281 cgcgctgcat cgaagtcctg acgcggggta ttccattcgg ccagccgcgc ctggtcgccg
     2341 tcatccagca gttgcagacg caccaggggt tgatccggcg cagcactgac ctgctccagc
     2401 aggcccagca ggtgcgcgct catctgctgc atctgcccat cgtcgaggcg ctcgcgggcc
     2461 caggtcaggg tcagacgcag ttggccggcg ctgtcttcca ggctgtccag ggccaagtcg
     2521 aacagggcgt gcggtacgcc ctgtgccagc ggctccaggc gcaggcctgg cagctgcagg
     2581 gcgccaaggt cgcgcttctg gtggttgaac agcacctgga acagtggcgt ctgacccagg
     2641 ctgcgttctg gggccagggc ctccaccaac tggtcgaacg gcaggtcctg ctggtcctgg
     2701 gcatccaggg cgtggcggcg cacttcggcc agcagctggc ggaagctcag gcc
//
LOCUS       DATIHC010000557         3382 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8622, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000557 DATIHC010000000
VERSION     DATIHC010000557.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3382)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3382)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3382
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8622"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..238
                     /locus_tag="VLF16_09110"
     CDS             <1..238
                     /locus_tag="VLF16_09110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HSX71080.1"
                     /translation="PYTEALLKAIPEHSLGAERLATLPGIVPGRYDRPAGCLLSPRCP
                     YAQPHCREQRPALEPHVRGAVRCFYPLNLTAEVA"
     gene            238..1215
                     /locus_tag="VLF16_09115"
     CDS             238..1215
                     /locus_tag="VLF16_09115"
                     /EC_number="7.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011920993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter ATP-binding protein"
                     /protein_id="HSX71081.1"
                     /translation="MSIVLEARELTRHYEISRGLFKPNALVRALNGVSFSLEAGKTLA
                     VVGESGCGKSTLARALTLIEEPSAGSLQIAGQEVAGAGKAERRQLRRDVQMVFQNPYA
                     SLNPRQKIGDQLAEPLLINTGLSRTERREKVQAMMQQVGLRPEHYQRYPHMFSGGQRQ
                     RIALARAMMLQPKVLVADEPTSALDVSIQAQVLNLFMDLQEEYGTGYVFISHNLAVVQ
                     HVADDVLVMYLGRPAEMGPAALIYERPLHPYTRALLSATPAIHPDPAKPKIKIAGELP
                     NPLDPPPGCAFHRRCPHATERCRVDVPELRLIDARQVACHHAEEIADRA"
     gene            complement(1217..2317)
                     /locus_tag="VLF16_09120"
     CDS             complement(1217..2317)
                     /locus_tag="VLF16_09120"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSX71082.1"
                     /translation="MLLIGALEARADGGVEPGALHLGMVNAQSGPAAGLGRGMLDGAQ
                     AYFSRINEAGGVHGRQLNLVLRDDGYEPARTARLTEELIASRGVFALFGFVGTPTSRA
                     AMPSVLAAGVPYLFPLSGAEVLREPLHRTVFNVRASYFAETALLAAYMTEQLQLKRVA
                     LLMQNDSFGETVKSGLAGALHQRGRRIEGEARILRNSPEIAGAVRQLKQTDPEAIVFI
                     GTYRQLAASIRAAREQGLKARFFSVSFIGTESFIAEAGADAEGVYISQVVPSPEDRSL
                     PLVRNYQADMRGPLGHASLEGYIGAAVLVEALRRVGPEPTRERLIEALESLDIDLGGF
                     HVRFGPTDHQGSDAVYLTRIEQGRAMPVQPRP"
     gene            2651..2971
                     /locus_tag="VLF16_09125"
     CDS             2651..2971
                     /locus_tag="VLF16_09125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020297219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71083.1"
                     /translation="MKKQILTALLVSTFAASGITFAADGYDRTGSYIAADGYDRTGSY
                     IAEDGFDNTGSAVAEDGSDSVGDKIAADGFDRTGSFIAEDGFDNTGSAVAEDGSDRVG
                     SNIA"
BASE COUNT          613 a         1240 c         1031 g          498 t
ORIGIN      
        1 cccctacacc gaggcgctgc tcaaggccat tcccgagcac agcctggggg ccgaacgcct
       61 ggccaccctg cccggcattg tgcccggccg ttacgaccgc cccgccggct gcctgctgtc
      121 gccacgctgc ccctatgccc agccgcattg tcgcgagcag cgcccggcgc tggaaccgca
      181 cgtgcgtggc gcggtgcgct gcttctaccc cctcaacctg accgcggagg tggcctgatg
      241 agcatcgtcc tcgaggcccg cgagctgacc cggcactacg aaatctcccg cggcctgttc
      301 aaacccaacg ccctggtgcg cgcgctcaac ggcgtgtcct tctcgctgga agccggcaag
      361 accctggcgg tggtcggcga gtccggctgc ggcaagtcga ccctggcccg cgccctgacc
      421 ctgatcgagg agcccagcgc cggcagcctg cagatcgccg ggcaggaagt ggccggcgca
      481 ggcaaagccg agcgcaggca gctgcgtcgc gacgtgcaga tggtgttcca gaacccctat
      541 gcctcgctca acccacggca gaagatcggc gaccagctgg ctgaaccgct gctgatcaac
      601 accggcctgt cgcgcaccga gcgccgcgag aaggtgcagg ccatgatgca gcaggtgggg
      661 ctgcgccctg agcactacca gcgctacccg cacatgttct ccggcggcca gcgccagcgc
      721 atcgccctgg cccgcgccat gatgctgcag cccaaggtgc tggtggcgga cgagccaacc
      781 tcggcgctgg acgtgtcgat ccaggcccag gtgctcaacc tgttcatgga cctgcaggaa
      841 gagtacggga ccggctacgt gttcatctcg cacaacctgg cggtggtgca gcacgtggcc
      901 gacgacgtgc tggtgatgta cctcggccgc ccggccgaaa tgggcccggc cgcgctgatc
      961 tacgagcggc cgctgcaccc ctacacccgc gccctgctct cggccacccc ggcgatccac
     1021 ccggacccgg ccaaaccgaa gatcaagatc gccggcgagc tgcccaaccc gctcgacccg
     1081 ccacccggct gcgccttcca ccgccgctgc ccacatgcga ccgagcgttg ccgcgtggac
     1141 gtgccggaac tgcgcctgat cgacgcgcgt caggtggcct gccaccatgc cgaggaaatt
     1201 gccgacagag cctagctcag ggccgaggct gcaccggcat cgcccggccc tgctcgatgc
     1261 gagtcaggta gaccgcgtcg gagccctggt ggtccgtggg gccgaagcgt acgtgaaagc
     1321 cgccgaggtc gatgtccagc gactccagcg cctcgatcag ccgctcgcgt gtaggctctg
     1381 gcccgacgcg gcgcagcgcc tccaccagca ccgcggcacc gatgtagccc tccagcgagg
     1441 catggccgag cgggccgcgc atgtccgcct ggtaattgcg caccagcggc agcgagcggt
     1501 cttcggggga cggcaccacc tgggagatgt acacaccctc ggcgtccgca ccggcctcgg
     1561 cgatgaagct ctcggtgccg atgaacgaca cgctgaagaa gcgcgccttc aggccctgtt
     1621 cgcgcgccgc gcggatcgag gcggccagct gccggtaggt gccgatgaag acgatggcct
     1681 cggggtcggt ctgcttgagc tggcgcaccg cgccggcgat ctccggtgaa ttgcgcagga
     1741 tgcgcgcctc cccctcgatc cgtcggccac gctggtgcag cgccccggcc aggccgctct
     1801 tgaccgtctc gccgaaagag tcgttctgca tcagcagggc gacgcgtttc agctgcagtt
     1861 gctcggtcat gtacgccgcc agcagcgcgg tctcggcgaa ataggaggcg cgcacgttga
     1921 acaccgtgcg gtgtaacggc tcgcgcagca cctcggcacc cgacagcgga aacagataag
     1981 gcacgccggc ggccaatacg ctcggcatgg cggcccgcga ggtcggcgtg ccgacgaagc
     2041 cgaacagggc gaagacgccg cgcgaggcga tcagctcttc ggtgaggcga gcggtgcggg
     2101 cgggctcgta gccgtcgtcg cgcagcacca ggttcaattg gcgcccgtgc acgccgccgg
     2161 cctcgttgat gcgcgagaaa tacgcctgcg cgccgtcgag catcccacgc cccaatccgg
     2221 cggccggtcc gctttgcgcg ttgaccattc ccagatgcag cgcgccgggc tcgacgcccc
     2281 cgtcggcccg cgcctccagg gcgccaatca gcagcatgaa aacagcagtg cagcacaaca
     2341 caggtcgcaa catcgtcacg ctccagcccc cgctcgttca tgcccttggc ctggcacgag
     2401 acggcttccg tttgcctctc agcttagccg caaagcctgg gccggacacc cattcggcac
     2461 gccccgaaca acaccttagc gacgcccgcc ctgtctgctg gaggcgtcta atgcccgatc
     2521 tagagcggtt tttagactat cgatgacgat gatgagcagc atcgagcgct tcaagttcta
     2581 tcttcgcagg gcaacccgga acataggccc cgtagacaac aactcatacc cccctacgga
     2641 gcacccaatc atgaaaaagc aaatcctcac cgccctgctc gtttccacct tcgccgccag
     2701 cggcatcacc ttcgcggccg acggctatga ccgcactggc agctacatcg ccgccgatgg
     2761 ttacgaccgc accggcagct acatcgccga agacggtttc gacaacaccg gtagcgccgt
     2821 ggccgaagat ggctccgaca gcgtgggcga caagatcgcc gccgatggct tcgaccgcac
     2881 tggcagcttc atcgccgaag acggcttcga caacaccggc agcgccgtgg ccgaagacgg
     2941 ttccgaccgt gtcggcagca acatcgcctg agccaatcga tggagtggag ccagcaagca
     3001 atgacgtgtg cacagctcga aagcccgaag gcgccctcag tggcgccttc gtcgtttccg
     3061 aggtaagcga aacacgaccc accccgtccg acctactgcg tagcggccat ccaaaccctg
     3121 tcgcagccac cccgaaacgc cacctcgaaa acgccggaaa ccctgtgcca gagccatcct
     3181 cgccatcatc aaccgcatcg attagcagca tcgagcgctt caagttctct cttcgcgggg
     3241 caacccggaa cataggcccc gtagacaaca actcttaccc cctacggagc aaccatcatg
     3301 aaaatgcaaa tcctcaccgc cctgctcgtt tccaccttcg ccgccagcgg catcaccttc
     3361 gcggccgacg gctatgaccg ca
//
LOCUS       DATIHC010000558         2120 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34224, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000558 DATIHC010000000
VERSION     DATIHC010000558.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2120)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2120)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2120
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34224"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(40..1047)
                     /gene="plsX"
                     /locus_tag="VLF16_09130"
     CDS             complement(40..1047)
                     /gene="plsX"
                     /locus_tag="VLF16_09130"
                     /EC_number="2.3.1.274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009042849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043811 - phosphate:acyl-[acyl carrier
                     protein] acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HSX71084.1"
                     /translation="MSAPIAIDAMGGDFGPHCIVPACIASLAEFPSLHLVLVGQAPVL
                     EELIARHPGVDRARLQVEHASEVIGMDERPTQALRGKPDASMRVMLELVRSGRAKACI
                     SAGNTGALMALSLYVLKPLPGIDRPAMVTAVPTAKGVCHLLDLGANVDCSAEQLYQFA
                     VMGAVAAEAQGVERPRVALLNVGTENIKGNQQVKLAASLLQQAPGLNYVGFVEGDGLY
                     RGEADVVVCDGFVGNILLKSSEGLVSMISERIEALFNEGFVSRLAGAVALPLLKRLRG
                     ELAPARHNGASFLGLQGIVVKSHGAASSEGFQSAIRRAVIEVRENLPQRLHGRLEDLL
                     L"
     gene            complement(1051..1233)
                     /gene="rpmF"
                     /locus_tag="VLF16_09135"
     CDS             complement(1051..1233)
                     /gene="rpmF"
                     /locus_tag="VLF16_09135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HSX71085.1"
                     /translation="MAVQQNKKSRSARDMRRSHDALEANALSVEKSTGEVHLRHHVSP
                     EGVYRGRKVIDKGADE"
     gene            complement(1247..1774)
                     /locus_tag="VLF16_09140"
     CDS             complement(1247..1774)
                     /locus_tag="VLF16_09140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003381104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceD family protein"
                     /protein_id="HSX71086.1"
                     /translation="MSNGPIPPHVDPRKLADRGATLEGELPLASFGRLCDSLEDNSGQ
                     VRAKLVFERGERRAVSIHSELEVEVKMVCQRCLELVALPIRSECHYAVVKEGADTQSL
                     PKGYDVLEMGEDPLDLLTLVEDELLLALPIVPTHAPEECQQPAGAKEPEPSQDEVSRS
                     NPFSVLAQLKRDPNV"
     gene            1892..>2120
                     /locus_tag="VLF16_09145"
     CDS             1892..>2120
                     /locus_tag="VLF16_09145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016500897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family protein"
                     /protein_id="HSX71087.1"
                     /translation="MLVLASSSPYRRELLTRLRQPFTWASPAIDETPRPEENAEALVR
                     RLAEAKARALSETHPVHLIIGSDQVAVLGEQI"
BASE COUNT          393 a          701 c          661 g          365 t
ORIGIN      
        1 gggctgcacg gtagcgagac acatcgcagc ggctgccggt cagagcagca ggtcctcgag
       61 gcgtccgtgg aggcgctgcg gcagattctc gcgcacctcg atgacagccc gacggatggc
      121 gctctggaag ccctcgctgc tcgcagcgcc gtgactcttc accacgatgc cctgcaggcc
      181 gaggaagctg gcgccattgt gccgcgccgg ggccagttcg ccgcgcaagc gcttgagcag
      241 cggcagcgcc acggcgccgg ccagcctgga gacgaatcct tcgttgaaca gcgcctcgat
      301 gcgctcggaa atcatcgaga ccaggccctc gctggacttg agcaggatgt tgccgacgaa
      361 gccgtcgcac accaccacgt cggcctcgcc tcggtacagg ccgtcgccct cgacgaagcc
      421 gacgtaattc aaccccggtg cctgctgcag cagactggcg gccagcttga cctgctggtt
      481 gcccttgatg ttctcggtgc cgacgttgag caacgccacc cgcggccgct ccacgccctg
      541 ggcctcggcg gccacggcgc ccatgacggc gaactgatag agctgctcgg cgctgcaatc
      601 gacattggcg cccaggtcga gcagatgaca gacacccttg gcggtgggca cggcggtgac
      661 catcgccggc cggtcgatgc ccggcagcgg cttgagcaca tagagagaaa gcgccatcag
      721 cgcaccggtg ttaccggcac tgatacaggc cttggcccgc ccgctgcgga ccagttcgag
      781 catgacgcgc atggaggcgt cgggcttgcc gcgcagagcc tgggtggggc gctcgtccat
      841 gccgatcact tcactggcat gctcgacttg caggcgcgcg cgatcgacac ccggatggcg
      901 ggcgatcagt tcttcgagga cgggagcttg gccgacgagg accagatgaa gcgaggggaa
      961 ttcagccaga ctggcgatgc aggctggaac aatgcagtgg ggaccgaagt ccccacccat
     1021 tgcatcgatc gcgatcggag cggacaagga ttactcgtcg gcgcccttgt cgatcacttt
     1081 acggccgcgg tacacacctt ccggggacac gtggtgacgc aggtgaactt caccggtgct
     1141 cttctcgacg gacagagcgt tggcctcgag agcgtcgtgc gaacggcgca tgtcgcgggc
     1201 agagcgggat tttttgttct gctgaacagc cataactcaa taactcctaa acgtttgggt
     1261 cacgctttaa ctgcgccaaa acactgaacg ggttggaccg cgatacctcg tcctggctcg
     1321 gctcgggctc ttttgcaccg gccggctgct ggcattcctc aggggcatgg gtcggaacga
     1381 tgggcagagc gagcaacagc tcatcttcga ccagcgtcag cagatccagt ggatcttcgc
     1441 ccatttccag cacgtcatag cccttcggca gcgactgggt atccgcacct tccttcacca
     1501 ccgcgtaatg acactcgctg cggatcggca gggcgaccag ttccagacaa cgctggcaaa
     1561 ccatcttgac ctcaacctcg agctcgctgt gaatactcac agcacgacgc tcgccacgtt
     1621 cgaagaccag cttcgcgcgc acctggccgg aattatcttc cagcgagtcg cacagtcgcc
     1681 cgaaactggc cagcggaagc tccccttcaa gggtggcacc gcgatcggcg agtttgcgcg
     1741 gatcaacgtg aggtggaatc ggcccattcg acataggcgc ggtattctag ggatgcgccc
     1801 tgccagtgtc aaaggaattt ccgccctgtc cgtcggacgc cacggccgct agaatcgcgc
     1861 gcttcttgca attccggtca ggagatcgct catgctggta ctcgcctcta gctcgcccta
     1921 ccgccgcgaa ctgctgaccc gcctacgcca gcccttcacc tgggcatcac cggccatcga
     1981 cgagacgcct cgccccgaag aaaacgccga agcgctggtg cgccgcctgg ccgaagccaa
     2041 ggcgcgtgcg ttgagcgaga cgcacccggt gcatttgatc atcggctcgg accaggttgc
     2101 cgtgctcggc gagcagatcc
//
LOCUS       DATIHC010000559         3463 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8623, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000559 DATIHC010000000
VERSION     DATIHC010000559.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3463
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8623"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            20..1750
                     /gene="hutU"
                     /locus_tag="VLF16_09150"
     CDS             20..1750
                     /gene="hutU"
                     /locus_tag="VLF16_09150"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015478438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016153 - urocanate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HSX71088.1"
                     /translation="MTTTPTAASPDTRSDAELDAIVERLVGDLSAVHAPTGTERTAKS
                     WLTEAPLRMLMNNLDPEVAENPRELVVYGGIGRAARNWECYDKIVETLKELNDDETLL
                     VQSGKPVGVFKTHANAPRVLIANSNLVPHWASWEHFNELDAKGLAMYGQMTAGSWIYI
                     GSQGIVQGTYETFVEAGRQHYDGNLKGRWVLTAGLGGMGGAQPLAATLAGACSLNIEC
                     QQTSIDFRLRSRYVDEQASDLDDALARIAKYTSEGKAISIALLGNAAEILPELVRRGV
                     RPDMVTDQTSAHDPLNGYLPAGWTWEQYKDRAANDPAAVVKAAKQSMAVHVQAMLDFQ
                     KMGVPTFDYGNNIRQMAKEEGVSNAFDFPGFVPAYIRPLFCRGVGPFRWAALSGNAED
                     IYKTDAKVKELIPDDAHLHRWLDMARERIAFQGLPARICWVGLGQRAKLGLAFNEMVR
                     SGELSAPIVIGRDHLDSGSVSSPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSL
                     HHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLTNDPGTGVMRHADAGYEIAIDCAR
                     EQGLKLPMIG"
     gene            1873..3405
                     /gene="hutH"
                     /locus_tag="VLF16_09155"
     CDS             1873..3405
                     /gene="hutH"
                     /locus_tag="VLF16_09155"
                     /EC_number="4.3.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007159365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004397 - histidine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ammonia-lyase"
                     /protein_id="HSX71089.1"
                     /translation="MNTLNLKPGHLTLADLRAAYQAPLHLTLDPSAHPAIDASVACVE
                     NIIAEGRTAYGINTGFGLLASTRIANADLEKLQRSLVLSHAAGTGEPLDDAMVRLIML
                     LKVNSLARGFSGIRRKVIEALIALVNAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGE
                     SQARHKGEWLPATEALAIAGLEPMTLAAKEGLALLNGTQVSSAYALRGLFEAEDLYAA
                     ASVCGALSVEAMLGSRAPFDARIHAARGQRGQIDAAAAYRHLLGASSEIGRSHAACDK
                     VQDPYSLRCQPQVMGACLTQLRQAAEVLAVEANAVSDNPLVFAAEGDVISGGNFHAEP
                     VAMAADNLALAIAEIGSLSERRISLMMDKHMSQLPPFLVANGGVNSGFMIAQVTAAAL
                     ASDNKALAHPHSVDSLPTSANQEDHVSMAPNAGKRLWEMVANTRGVLAVEWLGACQGL
                     DFREGLKSTPPLEQARQALRAQVPYYVEDRFFAPDIAAANDLLAERVLTPLLPPGLLP
                     SL"
BASE COUNT          570 a         1291 c         1119 g          483 t
ORIGIN      
        1 aggtcgtagg atcctcgaca tgaccacgac gccgaccgca gcctcgcccg acacccgctc
       61 cgacgccgag ctcgacgcga tcgtcgaacg cctcgtcggc gacctgtcgg cggtccacgc
      121 acccaccggc accgagcgca ccgccaagag ctggctgacc gaagcgccgc tgcgcatgct
      181 gatgaacaac ctcgaccccg aggtggccga gaaccccagg gagctggtgg tgtacggcgg
      241 catcggccgc gccgcgcgca actgggagtg ctacgacaag atcgtcgaga cgctcaagga
      301 actgaatgat gacgagaccc tgctggtgca gtccggcaag ccggtcggcg tgttcaagac
      361 ccacgccaac gcaccgcggg tgctgatcgc caactccaac ctggtgccgc actgggccag
      421 ctgggagcac ttcaacgagc tggatgccaa gggcctggcc atgtacgggc agatgaccgc
      481 cggcagctgg atctacatcg gcagccaggg catcgtccag ggcacctacg agaccttcgt
      541 cgaggccggt cgccagcact acgacggcaa cctcaagggc cgctgggtac tgaccgcggg
      601 cctcggcggc atgggcggcg cccagccgct ggccgccacg ctcgccggcg cctgctcgct
      661 gaacatcgaa tgccagcaga ccagcatcga cttccgcctg cgcagccgct acgtggatga
      721 acaggccagc gacctggacg acgccctggc gcgcatcgcc aagtacacca gcgagggcaa
      781 ggccatttcc atcgccctgc tgggcaacgc cgccgagatt ctgccggaac tggtacgccg
      841 tggcgtgcgc ccggacatgg tcaccgacca gaccagcgcc cacgacccgc tcaacggcta
      901 cctgccggcc ggttggacct gggagcagta caaggaccgc gccgccaacg acccggccgc
      961 cgtggtcaag gccgccaagc agtccatggc cgtgcacgtg caggccatgc tcgacttcca
     1021 gaagatgggc gtgccgacct tcgactatgg caacaacatc cgccagatgg cgaaagagga
     1081 gggggtgagc aatgccttcg acttccccgg cttcgtcccg gcctacatcc gcccgctgtt
     1141 ctgccgcggc gtcggcccgt tccgctgggc cgcgctgtcc ggcaacgccg aggacatcta
     1201 caagaccgac gccaaggtca aggagctgat ccccgacgac gcccacctgc accgctggct
     1261 ggacatggcc cgcgagcgca tcgccttcca gggcctgccg gcgcgcatct gctgggtcgg
     1321 cctgggccag cgcgccaagc tcggcctggc cttcaacgag atggtgcggt cgggcgagct
     1381 gtcggcgccc atcgtgatcg gccgcgacca tctggacagc ggctcggtgt ccagccccaa
     1441 ccgcgagacc gaggccatgc gcgacggctc cgacgccgtg tccgactggc cgctgctcaa
     1501 cgccctgctc aacaccgcca gcggcgccac ctgggtgtcg ctgcaccacg gcggcggcgt
     1561 cggcatgggc ttctcccagc attcggggat ggtcatcgtc tgcgacggca ccgacgaggc
     1621 ggcggcgcgc atcgcccgcg tgctgaccaa cgacccgggc accggcgtga tgcgccatgc
     1681 cgacgccggc tatgaaatcg ccatcgactg cgcccgcgaa cagggcctta aactgccgat
     1741 gatcggttga gaacccgtcc aggccctgcg cgtcggccga ccggcgcgca gaatgtctgg
     1801 gactccgcat cctcagccag tcgccgcgtt ggctctggct cgcgatttga acgctctgtg
     1861 gaagaattgc cgatgaacac gctgaacctg aaacccggcc acctcaccct ggccgacctg
     1921 cgcgccgcct accaggcgcc gctgcacctg accctggacc cgagcgccca cccggcgatc
     1981 gacgccagcg tcgcctgcgt cgaaaacatc atcgccgaag gccgcaccgc ctacggcatc
     2041 aacaccggct tcggcctgct ggcctccacc cgcatcgcca atgccgacct ggaaaagctg
     2101 cagcgctcgc tggtgctgtc ccacgccgcc ggcaccggcg agccgctgga cgacgccatg
     2161 gtgcggctga tcatgctgct caaggtcaat agcctggccc gcggcttctc cggcattcgc
     2221 cgcaaggtga tcgaggcgct gatcgccctg gtcaacgccg aggtctatcc gcatatcccg
     2281 ctcaagggtt cggtgggtgc ctccggcgac ctggcgccgc tggcgcatat gtcgctggtg
     2341 ctgctcggcg aaagccaggc gcggcacaag ggcgaatggc tgccggccac cgaggccctg
     2401 gccatcgccg gcctggagcc catgaccctg gccgccaagg agggcctggc cctgctcaac
     2461 ggcacccagg tgtccagcgc ctatgccctg cgcgggctgt tcgaggccga ggacctgtac
     2521 gccgccgcca gcgtctgcgg cgcgctgagc gtcgaggcca tgctcggttc gcgggcgccc
     2581 ttcgatgcac gcatccatgc cgcccgcggc cagcgcgggc agatcgacgc cgctgccgcg
     2641 taccgtcacc tgctcggcgc cagcagcgag atcggccgct cccacgccgc ctgcgacaag
     2701 gtgcaggacc cgtactccct gcgctgccag ccccaggtga tgggcgcctg cctgacccag
     2761 ctgcgccagg ccgccgaggt gctggcggtg gaggccaacg cagtgtcgga caacccgctg
     2821 gtgttcgccg ccgagggcga cgtgatctcc ggcggcaact tccacgccga accggtggcc
     2881 atggccgccg acaacctcgc cctggccatc gccgagatcg gctcgctgtc cgagcggcgc
     2941 atctcgctga tgatggacaa gcacatgtcg cagctgccgc cgttcctggt ggccaacggc
     3001 ggcgtcaact ccggcttcat gatcgcccag gtcaccgcag cggccctggc cagcgacaac
     3061 aaggctctgg cccacccgca cagcgtcgac agcctgccca cctcggccaa ccaggaagac
     3121 cacgtgtcga tggcgccgaa cgccggcaag cgcctgtggg aaatggtcgc caacacccgt
     3181 ggcgtactcg ccgtggaatg gctgggcgcc tgccagggcc tggacttccg cgagggcctc
     3241 aagagcaccc cgccgctgga acaggcccgc caggccctgc gcgcccaggt gccgtactac
     3301 gtcgaggacc gcttcttcgc ccccgacatc gccgcggcca acgacctgct cgccgaacgc
     3361 gtgctgaccc cgctgctgcc gcccgggctg ctgccctcgc tgtaggtcgg gaacccgcgc
     3421 ggcatgcggg tgtgccggcc atgtagggtg gatgacgctc tgc
//
LOCUS       DATIHC010000560         1822 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34226, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000560 DATIHC010000000
VERSION     DATIHC010000560.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1822
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34226"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..731)
                     /locus_tag="VLF16_09160"
     CDS             complement(<1..731)
                     /locus_tag="VLF16_09160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia channel protein"
                     /protein_id="HSX71090.1"
                     /translation="MTLRKIAGLGALLSLVTPGLAMADEVVLNSGDTAWMLTATVLVL
                     FMTIPGLALFYSGMVRSKNVLSVMMQCFAITGLISILWGVYGYSLAFDTTGMEKGVTN
                     FNSFVGGLNKAFLSGLTTESLIGAFPESVFVTFQMTFAIITPALIVGAFAERMKFSAM
                     LIFMAVWFTLVYAPMCHMVWSGDGAFLWDEGVLDFAGGTVVHINAGIAGLVACLVLGK
                     RKGYPTTPMAPHNLGYTLVGAAMLW"
     gene            complement(767..1105)
                     /gene="glnK"
                     /locus_tag="VLF16_09165"
     CDS             complement(767..1105)
                     /gene="glnK"
                     /locus_tag="VLF16_09165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015367937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030234 - enzyme regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HSX71091.1"
                     /translation="MKLVTAIIKPFKLDDVRESLSEIGVQGITVTEVKGFGRQKGHTE
                     LYRGAEYVVDFLPKVKIDVAIADDQLDRVIEAITKAANTGKIGDGKIFVVNLEQAIRI
                     RTGETGTDAV"
     gene            1516..1776
                     /locus_tag="VLF16_09170"
     CDS             1516..1776
                     /locus_tag="VLF16_09170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003096478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HSX71092.1"
                     /translation="MLPPKAILDTLASHASRLFSGESAAPRAELEAQFKALLQSAFGK
                     LDLVGREEFDSQMAVLARTRARLEALEAKLAELEAQQKPPAE"
BASE COUNT          345 a          577 c          573 g          327 t
ORIGIN      
        1 atccacagca tggcggcgcc gaccagggtg tagcccaggt tgtgcggagc catcggagta
       61 gtcgggtagc ccttgcgctt gcccagcacc aggcaggcca ccaggccggc gataccggcg
      121 ttaatgtgca ccacggtgcc gccggcgaag tcgagcacgc cctcgtccca caggaaggcg
      181 ccgtcaccgg accagaccat gtggcacatc ggcgcgtaga ccagggtgaa ccagacggcc
      241 atgaagatca gcatcgcgga gaacttcatg cgctcggcga aggcgccaac gatcagggcc
      301 ggggtgatga tcgcgaaggt catctggaag gtgacgaaca cgctttccgg gaaggcgccg
      361 atcaggctct cggtggtcag gccgctgagg aacgccttgt tcaggccgcc gacgaaggag
      421 ttgaagttgg tgacgccctt ctccatgccg gtggtgtcga aggccaggct gtagccgtag
      481 accccccaga ggatgctgat caggccggtg atggcgaagc actgcatcat caccgagagg
      541 acgttcttgg agcggaccat gccgctgtag aacagcgcaa ggccggggat ggtcatgaac
      601 agcaccagca cggtggcggt gagcatccag gcggtgtcgc cggagttgag gacgacctcg
      661 tcagccatgg ccaggccagg ggttacgagg gacaaaaggg ctcctagccc tgcgatctta
      721 cgcagagtca tgtgtttttc tcctggggcg tatggggttc tgaggcttaa acggcgtcgg
      781 tgccggtttc gccggtacgg atgcggatgg cctgttccag attgacgacg aagatcttgc
      841 cgtcaccgat cttgccggtg ttggccgcct tggtgatcgc ctcgatgacc cggtccagct
      901 ggtcgtcggc gatggccacg tcgatcttca ccttgggcag gaaatccacc acgtattccg
      961 cacctcggta cagctcggtg tggcccttct gccggccgaa gcctttgact tcggtcacgg
     1021 tgatgccctg cacgccgatc tccgacagcg actcgcgcac gtcgtccagc ttgaacggct
     1081 tgatgatggc agtgactagc ttcatgaaac tctctcccgt ttggatggac tcgccccagg
     1141 aaaacgaacc cggctcaagt ctaagcgcag tgtctggctt ttgaaacgca tcgctcggca
     1201 tgcctcactg ccgcaccgat gcccaccgac cgcattccaa tgaggcgctc ccccacctca
     1261 tcctgcgcac cggtactgca tcggtgcacg cgtcacgggg tgtaaagcag aaagcttgcc
     1321 agctatgcca aaaggccact ttttcatggg tttagggcct tgatgatggc ttcgctgcgt
     1381 ttcgactccc gggtcactgc acatcattgg tgcagcgcgc acgtcgggca tgatcaaaaa
     1441 gcgtgcactt ggcgggcgcc cggccccgac caggccgcgt gctacactgc ccgccgttta
     1501 atccggaacc tcgccatgct gccgcccaaa gccatcctcg acaccctcgc cagccacgcc
     1561 tcgcgcctgt tcagcggtga aagcgcggcg ccccgcgccg agctggaggc gcaattcaag
     1621 gccctgctgc agagcgcctt cggcaagctg gatctggtcg gccgcgagga attcgacagc
     1681 cagatggccg tgctggcccg cacccgcgct cgcctggaag ccctcgaggc caagctcgcc
     1741 gagctggaag cccaacagaa acctcccgcc gagtaagcgt tcggcgggca tacgatcaaa
     1801 ggagtgatcg atgtccctgg cc
//
LOCUS       DATIHC010000561         7853 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29491, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000561 DATIHC010000000
VERSION     DATIHC010000561.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 7853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7853
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29491"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1089)
                     /locus_tag="VLF16_09175"
     CDS             complement(<1..1089)
                     /locus_tag="VLF16_09175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pili methyl-accepting chemotaxis
                     transducer N-terminal domain-containing protein"
                     /protein_id="HSX71093.1"
                     /translation="MKKLDAGNLLAGVRSNTLIAGLFVVLIISIVLLFANFAYLNTQS
                     GYDKEYISHAGELRVLSQRIAKNATEAATGKAEAFPLLKEARRDFEERWGFLTSGNEA
                     SGLPAAPESVKPQMDEVQKDWDVLRQNADAILQSEQTVLSLHQVAATLAETIPQLQVE
                     YEEVVDILLQSGAPAAQVSVAQRQSLLAERILGSVNKVLAGDEDSVQAADMFGRDASL
                     FGRVLKAMIEGNAAMEISAVTDENALERLAEISELFQFVSGSVDEILETSPELFQVRE
                     SANTIFTSSQTLLDKTSGLATEFENLADGRYFNTLAGYVLGALALAAIILIGLVMVRE
                     TNRRLASTAEISMAALPSIIALSTRPNRL"
     gene            complement(1174..1710)
                     /locus_tag="VLF16_09180"
     CDS             complement(1174..1710)
                     /locus_tag="VLF16_09180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HSX71094.1"
                     /translation="MSDAHSPFQLLVELDQRCRALAAGLPSQQQTVQTWSGIGFRMGE
                     RYFVAPMGEVGEVLHEPRHTLLPGVKSWVKGVANVRGRLLPVMDLCGFFGSDLSPLRK
                     QRRVLVVDHNEVFAGLTVDEVFGMQHFPVDTFSEQLPPLEAAIAPFIHGVFQRERPWL
                     VFSPHALAQHQGFLDVAV"
     gene            complement(1766..2131)
                     /gene="pilH"
                     /locus_tag="VLF16_09185"
     CDS             complement(1766..2131)
                     /gene="pilH"
                     /locus_tag="VLF16_09185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twitching motility response regulator PilH"
                     /protein_id="HSX71095.1"
                     /translation="MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGADGVALARQE
                     KPDAVLMDIVMPGLNGFQATRQLTKDAETSHIPVIIVTTKDQETDKVWGKRQGARDYL
                     TKPVDEDTLMKTLNAVLAG"
     gene            complement(2177..2584)
                     /gene="pilG"
                     /locus_tag="VLF16_09190"
     CDS             complement(2177..2584)
                     /gene="pilG"
                     /locus_tag="VLF16_09190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twitching motility response regulator PilG"
                     /protein_id="HSX71096.1"
                     /translation="MEQHSDGLKVMVIDDSKTIRRTAETLLKKVGCEVITAVDGFDAL
                     AKIADTHPSIIFVDIMMPRLDGYQTCALIKNNSAFKSTPVIMLSSKDGLFDKAKGRIV
                     GSDQYLTKPFSKEELLGAIKAHVPEFVPVEQAS"
     gene            2807..3766
                     /gene="gshB"
                     /locus_tag="VLF16_09195"
     CDS             2807..3766
                     /gene="gshB"
                     /locus_tag="VLF16_09195"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009615248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004363 - glutathione synthase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HSX71097.1"
                     /translation="MSIRLGIVMDPIAQINFKKDSSLAMLLAAQDRGWSLFYMEQRDL
                     YQNAGQARARMTPLRVFNDPQRWFELGEEQDAPLAELDVILMRKDPPFDNEFVYSTYL
                     LEQAEREGVLVVNRPQSLRDCNEKLFATQFPHCMPPTLVSRRADILREFAQTQRDIIL
                     KPLDGMGGSSIFRHREGDPNLSVILETLTEHGTRQIMAQGYLPGIKDGDKRILMIDGE
                     PIPYCLARIPAQGETRGNLAAGGRGEARPLTERDRWIAAQVGPALREKGLLFVGLDVI
                     GEHLTEINVTSPTCIREIDKAFDTRIGERLMDAIEGKLAARKA"
     gene            3850..4755
                     /locus_tag="VLF16_09200"
     CDS             3850..4755
                     /locus_tag="VLF16_09200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003162015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HSX71098.1"
                     /translation="MNAAVRPPPELTTSQGIRPADRLGFTLFVAALLHLALILGVGFT
                     LAKPGQISKTLEITLSTFKSEEQPKEADFLAQDNQQGSGTLEHKAAPKTTEQAPFQDS
                     KVNKVTPAAAPQPTQRKEAPAAKTALTTTKPQPQKAVTRQKEEEPQPEAQPAPVFDST
                     QLSAEIASLEAELAQEQQLYAKRPKIHRLNAASTMRDKGAWYKDEWRKKVERVGNLNY
                     PEEARRQRIYGNLRMLVSINRDGTLYEVQVLESSGQQVLDQAALRIVRLAAPFAPFAG
                     DLADIDRLEIIRTWRFERGDRLSSN"
     gene            4817..5383
                     /locus_tag="VLF16_09205"
     CDS             4817..5383
                     /locus_tag="VLF16_09205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003455575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HSX71099.1"
                     /translation="MKTAASYLKHHFLIAMPHMADPNFAQTVTYLVEHNEQGAMGLVI
                     NRANGLTLADVLEQLRPDETPPARCQALPILAGGPVQTDRGFVLHPTGHSFQATLELG
                     ELALSTSQDVLFAIADGSGPDKHLITLGYAGWEAGQLEAELADNAWLTCPADAAILFD
                     TPLDGRLSAAAARLGINLSLLTAQAGHA"
     gene            5380..5805
                     /gene="ruvX"
                     /locus_tag="VLF16_09210"
     CDS             5380..5805
                     /gene="ruvX"
                     /locus_tag="VLF16_09210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017938562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HSX71100.1"
                     /translation="MSEAPRLLLGFDYGTKQIGVAVGQAVTGQARELCVLKAQNGVPD
                     WQKVEALIKEWQPDAIVVGLPLNMDGTRSEMSERAEKFARRLNGRFNLPVHTHDERLT
                     TFEAKGQRLSQGQRGGYRERPVDALAAALLLEGWLEHHL"
     gene            5828..6334
                     /gene="pyrR"
                     /locus_tag="VLF16_09215"
     CDS             5828..6334
                     /gene="pyrR"
                     /locus_tag="VLF16_09215"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HSX71101.1"
                     /translation="MTLPNPQQLLPRMAADLKALLARRGVEQARFIGIRTGGVWVAEA
                     LLRELDLDQPLGTLDVSFYRDDFTRSGLHPQVKPSELPFEIEDQHLVLIDDVLMSGRT
                     IRAALNELFDYGRPASVTLVSLLDLDARELPIHADVLGATLALAPEQRVKLSGPAPLA
                     LELQRLSA"
     gene            6344..7345
                     /locus_tag="VLF16_09220"
     CDS             6344..7345
                     /locus_tag="VLF16_09220"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HSX71102.1"
                     /translation="MPIDAKRSLQLNDQGQLRHFLSLDGLPRELLTEILDTADSFLEV
                     GARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVITLNVSTSSTSKGETL
                     FDTLRNLEAMAADMFVVRHADSGAAHFIAEHVCPDVAIINGGDGRHAHPTQGMLDMLT
                     IRRHKGGFENLSVAIVGDILHSRVARSNMLALKTLGCPDIRVIGPKTLLPIGIEQYGV
                     SVHHNLAEGLEDVDVVIMLRLQRERMQGGLLPSEGEFYKLYGLTEQRLKLAKPDALVM
                     HPGPINRGVEIESAVADGPQSVILNQVTYGIAIRMAVLSMAMSGQAAQRQLNAEEHN"
     gene            7345..>7853
                     /locus_tag="VLF16_09225"
     CDS             7345..>7853
                     /locus_tag="VLF16_09225"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003458775.1"
                     /note="Catalyzes the reversible hydrolysis of the amide
                     bond within dihydroorotate. This metabolic intermediate is
                     required for the biosynthesis of pyrimidine nucleotides;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HSX71103.1"
                     /translation="MGTRILGARVIDPASGLDRVCDLYLDGGKIAAFDQAPADFDADQ
                     EIDARGLVASPGLVDLSVALREPGYSRKGTIASETLAAAAGGVPSLCCPPLTKPVLDT
                     SAVAELILDRAQEAGHTKVFPIGALTKGLGGEQLAELVALRDAGCVAFANGLAPMANN
                     RTLRRALEYA"
BASE COUNT         1406 a         2763 c         2425 g         1259 t
ORIGIN      
        1 cagcctgttc ggtcgcgtgc tcaaggcgat gatcgaaggc aacgccgcca tggagatctc
       61 ggcggtagag gccagtcgac ggttggtctc gcgcaccatc accaggccga tgaggatgat
      121 cgccgccagg gccagggcac ccagcacgta gcccgccagg gtgttgaagt aacggccgtc
      181 ggccaggttc tcgaactcgg tggccaggcc ggaagtcttg tccagcaggg tctgcgagct
      241 ggtgaagatg gtattggcgg attcgcggac ctggaacagt tccggcgagg tctcgaggat
      301 ctcgtccacc gaaccggaaa cgaactggaa cagttcggaa atctcggcca gacgctccag
      361 agcgttctcg tcggttaccg ccgagatctc catggcggcg ttgccttcga tcatcgcctt
      421 gagcacgcga ccgaacaggc tggcgtcgcg gccgaacatg tcggcggcct gcaccgagtc
      481 ttcgtcaccg gccagcacct tgttcaccga gccgaggata cgttcggcga gcagcgactg
      541 acgctgggcc accgagacct gggccgccgg ggcgccggac tgcagcagga tgtcgaccac
      601 ctcttcgtac tcgacctgca gctgcggaat ggtttcggcg agggtcgcgg ccacctggtg
      661 cagcgacagt acggtctgtt cgctctgcag gatggcgtcc gcgttctgcc gcagcacgtc
      721 ccagtccttc tgtacctcgt ccatctgcgg cttgaccgac tcgggcgccg ccggcagacc
      781 gctggcctcg ttaccggagg tcaggaagcc ccagcgctcc tcgaagtcgc gacgcgcctc
      841 tttcagcagc gggaaggctt ccgccttgcc ggtcgccgct tccgtggcgt tcttcgcgat
      901 acgctgcgac agcacgcgca attcgcccgc gtggctgatg tattccttgt cgtagccgga
      961 ttgggtgttg aggtaggcga agttggcgaa cagcagcacg atggaaatga tcaggactac
     1021 gaagagtccg gcgatcagcg tgttactgcg cacacctgcc aagagattgc ctgcatcgag
     1081 ttttttcatt atttggcccc cgcctggacc taccgcacaa cgatttccat gtaaagccaa
     1141 agggccggca agcgccgacc caaccgaaat tgcctatacc gccacgtcga gaaaaccctg
     1201 gtgttgcgcc agcgcgtgcg ggctgaacac cagccaggga cgctcgcgct ggaagacccc
     1261 atgaatgaaa ggcgcaatcg ccgcctcgag aggcgggagc tgctcggaaa aggtgtccac
     1321 cggaaagtgc tgcatgccga acacctcgtc gaccgtcagg ccggcgaata cttcgttgtg
     1381 gtccaccacc agcacgcgcc gctgcttgcg cagaggcgac agatcgctgc cgaagaaccc
     1441 gcacaggtcc atcaccggca gcaggcgacc ccgcacgttg gccacaccct tgacccagct
     1501 cttcacaccc ggcagcaggg tgtgacgcgg ctcgtgcagc acttcgccca cctcacccat
     1561 gggcgcaacg aaatagcgct cgcccatgcg aaagccgatg ccgctccagg tctgcaccgt
     1621 ctgctgttgc gacggcaggc ccgcagccag cgcacggcag cgctggtcga gttctacgag
     1681 aagctggaag ggggaatgcg cgtccgacat gccggccttg gccttttctt cttatgtact
     1741 gctaatggcg cggactggca ggcgatcagc cggccagcac cgcgttgagg gtcttcatca
     1801 gcgtgtcttc gtcgaccggc ttggtcagat agtcacgcgc gccctggcgc ttgccccaga
     1861 ccttgtcggt ctcctgatcc ttggtggtca cgatgatcac cgggatgtgg ctggtttcgg
     1921 cgtccttggt cagctgacga gtcgcctgga aaccgttgag accgggcatg acgatatcca
     1981 tcagcacggc atcaggcttt tcctggcgag ccagggccac gccatcggca ccattttccg
     2041 ccttgagtac ctgatggcca tgcttctcga gcatggcggt cagcttgtac atctcggtcg
     2101 gcgagtcatc aacaatcaga atacgagcca tgaagttccc cattcggaat aggcatcgcc
     2161 ggcttgtggc cggctatcag gaggcttgct ccaccgggac gaattcgggc acatgcgcct
     2221 tgatggcacc gagcagctct tccttgctga aaggcttggt caggtactgg tcggacccga
     2281 caatgcgacc cttggccttg tcgaacaggc cgtccttgga ggacagcatg atcaccgggg
     2341 tggatttgaa agcactgttg ttcttgatca gggcgcaggt ctgatagccg tcgaggcgcg
     2401 gcatcatgat atcgacgaag atgatgctcg gatgcgtatc ggcgatcttg gccagcgcat
     2461 cgaaaccgtc aaccgcagtg atgacctcgc aacccacctt cttcaacagc gtctcggcgg
     2521 tgcgacgaat cgtcttcgaa tcgtcgatca ccatgacctt caaaccgtcg gaatgctgtt
     2581 ccatgtctgc cctaccatcg cctcggcgat tatttgtttt atctatacag cgcagtgtgg
     2641 ctgaggccgt atcactaacg ggctgcgacc cgatcgtccg gactttttag cacactctcc
     2701 tgacgcaatc tataagcccc taatactcgg ggtttttctt gaccggcagc gtctcgcggc
     2761 gccacccttg cgcatctctt cggcccttgg aagcaggttt cgccccatga gcattcgcct
     2821 ggggatcgtc atggatccca tcgcccagat caacttcaag aaggacagct ccctggccat
     2881 gctcctggct gcccaggacc gcggctggtc actgttctac atggaacagc gcgatctcta
     2941 tcagaacgcc ggccaggccc gcgcccggat gacgccgctg cgcgtcttca acgacccgca
     3001 acgctggttc gaactgggcg aggaacagga cgccccgctg gccgagctgg acgtgatcct
     3061 gatgcgcaag gatccgccct tcgataacga gttcgtctac tccacttact tactggagca
     3121 ggccgagcgc gagggggtgc tggtggtcaa ccgcccgcag agcctgcgcg actgcaacga
     3181 gaagctgttc gccacccaat tcccccactg catgccgccc accctggtca gccgcagggc
     3241 cgacattctg cgcgagttcg cgcaaacgca gcgtgacatc attctcaaac ccctggatgg
     3301 catgggcggc tcctcgatct tccgccaccg cgagggcgac cccaacctgt cggtgatcct
     3361 ggaaaccctc accgagcacg gcacccgcca gatcatggcc cagggctacc taccgggaat
     3421 caaggacggt gacaagcgca tcctgatgat cgacggcgag ccgatcccct attgcctggc
     3481 acgcatcccc gcgcagggcg agactcgcgg caacctcgcc gccggcggcc gcggcgaggc
     3541 ccgcccgctg accgagcgcg accgctggat cgccgcccag gtcggcccgg cactacgcga
     3601 gaagggcctg ctgttcgtcg gcctggacgt gatcggcgag cacctcaccg agatcaacgt
     3661 gaccagcccg acctgcatcc gtgaaatcga caaggctttc gacacccgta tcggtgagcg
     3721 cctgatggac gcaatcgagg gcaagctcgc cgcgcgcaaa gcttgatcca ggtggcagct
     3781 tggcgcttgc ggcttgcagc cgcccggccc tagccggcag actgcgcggc aatccgtagg
     3841 cgccaccaga tgaacgcagc agtgagacct ccgcccgaac tgacgaccag ccaaggcatc
     3901 cgccccgcgg atcgcctggg ctttaccctg ttcgtcgcgg cgctgctgca cctggcgctg
     3961 attctcggtg tgggcttcac cctggccaag ccggggcaga tcagcaagac cctggaaatc
     4021 accctgtcca ccttcaagag cgaggagcag cccaaggagg ccgacttcct cgcccaggac
     4081 aaccagcagg gcagcggcac cctggagcac aaggcagcgc ccaagaccac cgagcaggcg
     4141 ccgttccagg acagcaaggt gaacaaggtg accccggccg ccgcgccgca gccgacccag
     4201 cgcaaggagg ctcccgccgc caagaccgcg ctgaccacca ccaagccgca gccgcagaaa
     4261 gccgtcacca ggcagaagga agaagagccg cagcccgagg cccagccggc gccggtgttc
     4321 gacagcaccc agctgtccgc ggagatcgcc agcctggagg ctgaactggc ccaggagcag
     4381 cagctctacg ccaagcgccc gaagatccac cgtctcaacg ccgcctcgac catgcgcgac
     4441 aagggcgcct ggtacaagga tgagtggcgc aagaaggtcg agcgggtcgg caacctcaac
     4501 tacccggaag aggcccgccg ccagcgcatc tacggcaacc tgcgcatgct ggtgtcgatc
     4561 aaccgcgacg gcacgcttta cgaggtgcag gtgctggaat cgtccggcca gcaggtgctc
     4621 gaccaggccg ccctgcgcat cgtgcgcctg gccgcaccct tcgcaccgtt cgccggcgac
     4681 ctcgcggaca tcgaccgcct ggagatcatc cgcacctggc gcttcgagcg cggcgaccgc
     4741 ctgtccagca actgatcgcc gcggcatttc cgcccggcgc ttgaagctgg cgccgtccgg
     4801 gacgaaacta gcggccatga agaccgccgc cagctacctc aagcaccact tcctgatcgc
     4861 catgccgcac atggccgatc cgaacttcgc gcagaccgtc acctacctcg tggagcacaa
     4921 cgaacagggc gccatgggcc tggtgatcaa ccgcgccaac ggcctcaccc tggccgacgt
     4981 gctggagcag ctgcgccccg acgagacgcc gccggcgcgc tgccaggcgc tgccgatcct
     5041 cgccggcggg ccggtacaga ccgatcgcgg cttcgttctg cacccgaccg ggcacagctt
     5101 ccaggcgacc ctggaactgg gcgagctggc cctctccacc tcccaggacg tgctgttcgc
     5161 catcgccgac ggcagcggcc cggacaaaca tttgatcacc ctcggctacg ccggatggga
     5221 agccggccag ctggaggccg aactggccga caacgcctgg ctgacctgcc cggccgacgc
     5281 cgcgatcctg ttcgacacgc cgctcgacgg gcgcctgtcc gcggccgccg cgcgcctggg
     5341 catcaacctc agcctgctca ccgcccaggc cggccacgca tgagcgaggc gccgcgcctg
     5401 ctgctgggct tcgactacgg caccaagcag atcggcgtcg ccgtcggcca ggccgtcacc
     5461 ggccaggccc gcgaactgtg cgtgctcaag gcgcagaacg gcgtgccgga ctggcagaag
     5521 gtcgaggcgc tgatcaagga atggcagccg gacgccatcg tcgtcggcct gccgctgaac
     5581 atggacggca cgcgcagcga gatgagtgag cgtgccgaga agttcgcccg tcgcctcaac
     5641 ggccgtttca acctgccggt gcacacccac gacgagcgcc tgaccacctt cgaggccaag
     5701 ggccagcgcc tctcccaggg ccagcgcggc ggctaccgcg agcgcccggt ggacgccctg
     5761 gccgccgccc tgctgctgga aggctggctg gaacaccatc tttaggaact ctttgcgagg
     5821 aatgcccatg accctgccca atccccaaca gctgctgccg cgcatggccg ccgacctcaa
     5881 ggccctgctg gcgcgccgcg gcgtcgagca ggcgcgcttc atcggcattc gcaccggcgg
     5941 cgtctgggtc gccgaggcct tgctgcgcga gctggatctg gatcagccgc tcggcaccct
     6001 ggacgtgtcc ttctaccgcg acgacttcac ccgcagcggc ctgcacccgc aggtcaagcc
     6061 gtccgagctg ccgttcgaga tcgaggatca gcacctggtg ctgatcgacg acgtgctgat
     6121 gagcgggcgc accatccgcg ccgcgctgaa cgagctgttc gactacggcc gcccggccag
     6181 cgtgaccctg gtcagcctgc tggacctgga cgcccgcgag ctgccgatcc acgccgatgt
     6241 gctcggcgcc accctcgccc tggcacccga gcaacgggta aaattgtccg gccccgcgcc
     6301 gctcgccctc gagctgcagc gcctttccgc ctaggaacac cccatgccca tcgacgccaa
     6361 gcgttcgctg cagctcaacg accagggcca gctgcgccac ttcctctcgc tcgacggcct
     6421 gccccgcgag ctgctgacgg aaatcctcga caccgccgac tcgttcctcg aggtcggcgc
     6481 ccgcgcggtg aagaaggtcc cgctgctgcg cggcaagacc gtgtgcaacg tgttcttcga
     6541 gaactccacg cgcacccgca ccactttcga gctggccgcc cagcggctgt cggccgacgt
     6601 catcaccctc aacgtctcca cctcctccac cagtaagggc gagacgctgt tcgacaccct
     6661 gcgcaatctg gaggcgatgg ccgccgacat gttcgtggtg cgccatgccg attccggcgc
     6721 cgcccacttc atcgccgaac acgtctgccc cgacgtggcc atcatcaacg gcggcgacgg
     6781 tcgccacgcg cacccgaccc agggcatgct cgacatgctg accatccgcc gccacaaggg
     6841 cggcttcgag aacctctcgg tggccatcgt cggcgacatc ctgcactcgc gggtggcgcg
     6901 ctcgaacatg ctggcgctga agaccctggg ctgcccggac atccgcgtga tcggcccgaa
     6961 gaccctgctg ccgatcggca tcgagcagta cggcgtcagc gttcaccaca acctggccga
     7021 gggcctcgag gacgtcgacg tggtgatcat gctgcgcctg cagcgcgagc gcatgcaggg
     7081 cggcctgctg cccagcgaag gcgagttcta caagctctac ggcctgaccg agcagcgcct
     7141 gaagctggcc aagccggatg ccctggtcat gcacccgggc ccgatcaacc gcggcgtgga
     7201 gatcgagtcg gcggtggccg acggcccgca gtcggtcatc ctcaaccagg tcacctacgg
     7261 catcgccatc cgcatggccg tgctgtcgat ggccatgagc ggccaggccg cccagcgtca
     7321 actcaatgcc gaggagcaca actgatgggc acgcgaatcc tcggagcccg ggtgatcgac
     7381 ccggccagcg gcctggaccg ggtctgcgac ctttacctgg acggcggcaa gatcgccgcc
     7441 ttcgaccagg cgccggccga cttcgacgcc gaccaggaaa tcgacgcccg cggcctggtc
     7501 gccagcccgg ggctggtcga cctgtccgtg gcgttgcgcg agccgggcta cagccgcaag
     7561 ggcactatcg ccagcgagac cctggccgcc gcggccggcg gtgtccccag cctgtgctgc
     7621 ccgccgctga ccaagccggt gctggacacc tcggcggtgg ccgagctgat cctcgaccgc
     7681 gcccaggagg cagggcatac caaggtcttc cccatcggcg cgctgaccaa gggtctcggc
     7741 ggcgaacagc tggccgaact ggtggcccta cgcgatgccg gctgcgtcgc cttcgccaac
     7801 ggcctggcgc cgatggccaa caaccgcacc ctgcgccgcg cgctggagta cgc
//
LOCUS       DATIHC010000562         1708 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31931, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000562 DATIHC010000000
VERSION     DATIHC010000562.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1708
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31931"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            623..>1708
                     /locus_tag="VLF16_09230"
     CDS             623..>1708
                     /locus_tag="VLF16_09230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rne/Rng family ribonuclease"
                     /protein_id="HSX71104.1"
                     /translation="MKRMLINATQPEELRVALVDGQKLYDLDIESGAREQKKANIYKG
                     RITRVEPSLEAAFVDFGAERHGFLPLKEISREYFSKAPEGGRVNIKEVLKEGQEVIVQ
                     VEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLNAP
                     GDMGLIVRTAGLGRSSEELQLDLDYLIQLWTAIKDASKDRAAPFLIYQESNVIIRAIR
                     DYLRQDIGEVLVDSVEAQEEALAFIQQVMPQYASKIKLYEDSVPLFNRFQIESQIETA
                     FQREVKLPSGGSIVIDPTEALVSIDINSARATKGGDIEETALQTNLEAAEEIARQLRL
                     RDIGGLIVIDFIDMENSRNQREVEQCLK"
BASE COUNT          397 a          563 c          482 g          266 t
ORIGIN      
        1 cgggagtagt catcggcgga tcataacaat ttttcatgca attgaagcac ttaatcattg
       61 ctgctatagt cgcgaacgcc gccaaaagcg gcccggtcag cggatgatcg acaatcctgc
      121 catccctgcc gagcgcaacc ctttcaggac gtaaggccgt ccgacgggaa tctcgccgca
      181 cagagcgcga cgaatcccgg aaacaaagcc ttgagccacg agcctgtcat cgatgcgcca
      241 cgcgcagaag tcgcgagcag gctcgacaga cgcgcagacc tcccgaagag atctgcgatt
      301 aatgcaaacc cgctgcggat tcagcgagcg gcacccgatt tcagcgatac gtgtagggtg
      361 gagatgcaca accgtcggac agcgtagctt caagcattac agacgcttca ccatcgtccg
      421 caccgaccgg ttgattcctc ccctgactga gtgcttctgt caccacagca aacaggagcg
      481 tagtcgcggc ccaggccccg ttggccagag ccgctggaca ctggagtgat ttacgaccac
      541 tcccgagcgc accctgacac cgaccgtgag agtcgtgtgt gccaaacgcc gtttccggca
      601 gcccggaaac cattggtaca acatgaaaag aatgctgatc aacgcaactc agcccgaaga
      661 gttgcgtgtc gccctggtag acggccagaa gctctacgac ctggacatcg agtccggcgc
      721 ccgcgagcag aagaaggcca acatctacaa gggccgcatc acccgcgtcg agcccagcct
      781 cgaagcggcg ttcgtcgatt tcggtgccga gcgccatggc ttcctgccgc tgaaggaaat
      841 ctcccgcgaa tacttctcca aggcccccga aggcggccgc gtcaacatca aggaagtatt
      901 gaaggaaggc caggaagtca tcgtccaagt cgagaaggaa gagcgtggca acaagggcgc
      961 cgccctgacc accttcatca gcctcgccgg tcgttacctg gtcctgatgc cgaacaaccc
     1021 gcgcgccggc ggcatctccc gccgcatcga gggtgaagag cgcaacgaac tgcgcgaagc
     1081 gctgaacggc ctcaacgccc cgggcgacat gggtctgatc gtgcgcaccg ccggcctggg
     1141 ccgctccagc gaagaactgc agctcgacct ggactacctg atccagctgt ggaccgccat
     1201 caaggacgcc tccaaggatc gcgccgcacc attcctgatc taccaggaat ccaacgtcat
     1261 catccgcgcc atccgcgact atctgcgcca ggacatcggc gaagtactgg tggacagcgt
     1321 cgaagcccag gaagaagccc tggccttcat ccagcaggtc atgccgcagt acgccagcaa
     1381 gatcaagctg tacgaagaca gcgtgccgct gttcaaccgc ttccagatcg agagccagat
     1441 cgagaccgcc ttccagcgcg aagtgaagct gccgtccggc ggttccatcg tcatcgaccc
     1501 gaccgaagcc ctggtgtcca tcgacatcaa ctcggcgcgt gcgaccaaag gcggcgacat
     1561 cgaagaaacc gccctgcaga ccaacctgga agcggctgag gaaatcgccc gccagctgcg
     1621 cctgcgcgac atcggcggcc tgatcgtcat cgacttcatc gacatggaga actcgcgcaa
     1681 ccagcgcgag gtcgagcagt gcctcaag
//
LOCUS       DATIHC010000563         2444 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36620, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000563 DATIHC010000000
VERSION     DATIHC010000563.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2444)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2444)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2444
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36620"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..280)
                     /locus_tag="VLF16_09235"
     CDS             complement(<1..280)
                     /locus_tag="VLF16_09235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013790604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HSX71105.1"
                     /translation="MAKRSGGLRFQPSGGERKAQVPVGKKQRLLVERMAHDGRGIAFE
                     DGRSWFIAGALPGEEVEARVLSARAQVVEARAERVLRAAELRRAPHCVH"
     gene            complement(330..1232)
                     /gene="cysM"
                     /locus_tag="VLF16_09240"
     CDS             complement(330..1232)
                     /gene="cysM"
                     /locus_tag="VLF16_09240"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004124 - cysteine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase CysM"
                     /protein_id="HSX71106.1"
                     /translation="MTVQYPTIADCIGNTPLVRLQRLPGNTSNTLLVKLEGNNPAGSV
                     KDRPALSMITRAELRGDIQPGDTLIEATSGNTGIALAMAAAIKGYKMILIMPDNSTDE
                     RKWAMTAYGAELILVSREEGMEGARDLAERLQAEGRGKVLDQFANGDNPEAHYLGTGP
                     EIWQQTQGGITHFISSMGTTGTIMGTSRYLKEQNPAIQIVGLQPQEGSAIPGIRRWPE
                     EYLPKIYQAERVDQVIDMSQAEAEDTMRRLAREEGIFCGVSSGGSVAGMLRLSREVEN
                     AVMVAIICDRGDRYLSTGIYQQPQ"
     gene            1401..>2444
                     /locus_tag="VLF16_09245"
     CDS             1401..>2444
                     /locus_tag="VLF16_09245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HSX71107.1"
                     /translation="MFKDLGIKGRVLLLTLLPTTLLALVLGGYFTWMQLADLRSQLQQ
                     RGELVVQHLAPLAAPALARGDAAQLERLAERTLNQQDVRAVGFLSAERDGLAQAGPDM
                     LNPPPQTTVEPLATSTSQDATRFLMPVFGRHQGLAGAEAESADRLLGWVELELSHHRT
                     LLQGYRSLFASLLLIVAGLTVTALLALRMSRTINDPLRTIQQGVSQLKEGHLETRLPP
                     LGSHEMDELAAGINRMAESLQNAQEELQHSIDQATEDVRQNLETIEIQNIELDLARKE
                     ALEASRIKSEFLANMSHEIRTPLNGILGFTGLLQKSDMTPRQQDYLGTIEKSAESLLG
                     IINEVLDFSKIEAG"
BASE COUNT          388 a          870 c          806 g          380 t
ORIGIN      
        1 catgaacgca gtgcggcgcg cggcgcagct cggcggcgcg cagcacgcgc tcggcgcgcg
       61 cctccaccac ctgggcgcgg gcgctgagca cacgggcctc gacctcctcg cccggcagcg
      121 cgccggcgat gaaccagctg cgaccgtcct cgaaggcaat gccgcgcccg tcgtgcgcca
      181 tccgctcgac gagcaggcgc tgcttcttgc ctaccggcac ctgagccttg cgctcgccgc
      241 cgctgggctg gaaacgcaaa ccgccgctgc gcttggccat ctttctcacc tgctgaactg
      301 ctggccgggg cacgggcccc ggcgaaaaat cactggggct gctggtagat accggtcgac
      361 aggtagcgat cgccgcggtc gcagatgatc gccaccatca ctgcgttctc cacctcgcgc
      421 gacaggcgca gcatgccggc caccgaaccg ccggacgaca cgccgcagaa gatgccctcc
      481 tcgcgcgcca ggcgccgcat ggtgtcctcg gcctcggcct gggacatgtc gatcacctga
      541 tcgacccgct cggcctggta gatcttcggc aggtattcct ccggccagcg gcggatgccg
      601 ggaatggccg agccctcctg gggctgcagg ccgacgatct ggatcgccgg gttctgttcc
      661 ttgaggtagc gcgaggtgcc catgatggtc ccggtggtgc ccatcgagct gatgaaatgg
      721 gtgatgccgc cctgggtctg ctgccagatc tccgggccgg tgcccaggta gtgggcctcc
      781 gggttgtcgc cgttggcgaa ctggtccagc accttgccgc ggccctcggc ctgcagacgc
      841 tcggccaggt cgcgggcgcc ctccatgccc tcctcgcggc tgaccaggat cagctcggcg
      901 ccgtaggcgg tcatcgccca cttgcgctca tcggtggagt tgtccggcat gatcaggatc
      961 atcttgtagc ccttgatcgc cgccgccatg gccagggcga tgccggtatt gccgctggtg
     1021 gcctcgatca gcgtgtcgcc gggctggatg tcgccgcgca gttcggcgcg ggtgatcatc
     1081 gacagcgccg gacggtcctt caccgagcca gccgggttgt tgccctcgag cttcaccagc
     1141 agggtgttcg aggtgttgcc gggcaggcgc tgcaggcgga ccagcggggt gttgccgatg
     1201 cagtcggcaa tggtggggta ctgcacggtc atggcggtgt tcggtccaga cacggaaggg
     1261 gcgcctatga tagcggcaaa cccgccgcga ccctactgcc gggcgcccgg gcggcagcca
     1321 tgcggtgcga ttgccacgcc catgcagatt cccgcccggc gactcgctaa actgcaccca
     1381 tcaccttgct ggagaacatc gtgttcaagg atctcggcat caagggccgc gtgctgctgc
     1441 tcaccctgct acccaccacg ctgctggcgc tggtcttggg cggctatttc acctggatgc
     1501 agctggccga cctgcgcagc cagctgcagc agcgcggcga gctggtggtc cagcacctgg
     1561 cgccgctggc agcgccggcc ctggcccggg gcgatgcggc gcaactcgag cgcctcgccg
     1621 aacgcacgct caatcagcag gacgtacgcg ccgtcggctt tctctccgcc gagcgcgacg
     1681 gtctggccca ggccggaccg gacatgctca acccgccgcc gcaaaccacc gtcgagccgc
     1741 tggccaccag caccagccag gacgccacgc gcttcctgat gccggtgttc ggtcgccacc
     1801 agggcctggc cggcgccgag gcggagagcg ccgatcgcct gctgggctgg gtcgaactgg
     1861 agctctcgca ccatcgcacc ctgctgcagg gctaccgcag cctgttcgcc agcctgctgc
     1921 tgatcgtcgc cgggctcacc gtcaccgccc tgctcgccct gcgcatgagc cggaccatca
     1981 acgatccgct gcgcaccatc cagcagggcg tcagccagtt gaaggaaggc cacctggaaa
     2041 cccgtctgcc accgctgggc agtcacgaga tggacgagct ggcggcgggc atcaaccgca
     2101 tggccgagtc gctgcagaac gcccaggagg agctgcagca cagcatcgac caggccaccg
     2161 aggacgtgcg gcagaacctg gagaccatcg agatccagaa catcgagctg gacctggcgc
     2221 gcaaggaggc cctggaggcc agccgcatca agtccgaatt cctggccaac atgagccacg
     2281 agatccgcac cccgctcaac ggcatcctcg gtttcaccgg cctgctgcag aagagcgaca
     2341 tgacgccacg ccagcaggac tacctgggca ccatcgagaa gtccgccgag agcctgctgg
     2401 ggatcatcaa cgaggtgctc gacttctcca agatcgaggc cggc
//
LOCUS       DATIHC010000564         3922 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43551, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000564 DATIHC010000000
VERSION     DATIHC010000564.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3922
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43551"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..937)
                     /locus_tag="VLF16_09250"
     CDS             complement(<1..937)
                     /locus_tag="VLF16_09250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase
                     N-terminal domain-containing protein"
                     /protein_id="HSX71108.1"
                     /translation="MSTTFHEIPRERPATPLLDSAETPDGLRRLAESELETLADELRQ
                     YLLYSVGQTGGHFGAGLGVVELTIALHYVLDTPEDRLVWDVGHQAYPHKILTGRRERM
                     NTLRQKDGLAAFPRRGESEYDTFGVGHSSTSISAALGMAIAARMQGSPRKAVAVIGDG
                     ALTAGMAFEALNHASDVKANMLVVLNDNDMSISKNVGGLSNYLAKIISSRTYSSMREG
                     SKKILSRLPGAWEIARKVEEHAKGMLVPGTLFEELGWNYVGPIDGHDLPTLITTLRNM
                     RDLDGPQFLHVVTKKGKGFAPAEVDPIGYHAITKLE"
     gene            complement(1099..2049)
                     /locus_tag="VLF16_09255"
     CDS             complement(1099..2049)
                     /locus_tag="VLF16_09255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008060413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSX71109.1"
                     /translation="MHIEHQLLAVNGIDLSLYSAGPANGRPVWLLHGFPECWYAWHPQ
                     IEALAAAGYRVFAPEMRGYGQSSAPSDPAAYDLITLCGDIQGAMDALGQTDVAVVGHD
                     WGAPVAWHLALLEPARVKALGALSVPFGGRPRRPAIEMMREAYAGRFHYILYFQEPGL
                     AEAELDADIGRSLRLLLGGLEGALLADKPADARLFDGLTDLPLPAWCPPELFAVYERT
                     FAGRGFHGALNWYRNFERNWQRTEHLADEQVEQPTLFLLGERDPVGRFEAPTLKRMTA
                     KVPRLEQHLLPGCGHWLQSERGEEVSALLLEFLGRHYPSA"
     gene            complement(2062..>3922)
                     /locus_tag="VLF16_09260"
     CDS             complement(2062..>3922)
                     /locus_tag="VLF16_09260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015648464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HSX71110.1"
                     /translation="PAAQRGVDAPPGTLALSAPSNGVLVVLQVAEGDAVAAGQVVAVL
                     EAMKMEFEVRAERGGIVRALAVAPGDALAEGQALLFLEPAEVAGTGGDSEESRDLEHI
                     RADLAEVLERHALLTDARRPAAVAKRRKTGQRTVRENLGDLLDDGSFIEYGAMALAAQ
                     RRRRSAEELLELSPADGLVAGIGTVGAAQFGEQAARCMAIAYDYTVFAGTQGVMNHKK
                     TDRMLALAEQWRLPVVLFAEGGGGRPGDTDFVGVAGLDCHTFVGMAKLSGLVPTVGVV
                     SGRCFAGNAALLGCCDVIIATRNASIGMAGPAMIEGGGLGSYKPEDVGPTSVQGPNGV
                     IDALVEDEAEAIRVARQYLSYFQGRQSDWRCADQRELRHLIPENRLRVYDIRQVIATL
                     ADADSVLELRRQFAPGLITAFIRIEGRPYGLIANNPAHLGGAIDAVAGDKAARFMQLC
                     EAHDLPIVSLCDTPGFMVGPQAEQQGTVRHVSRMFVTAASLTVPFFTLVLRKGYGLGA
                     QAMAAGSFHSPMFTAAWPSGEFGAMGLEGAVRLGFAKELAAQESDAARQALFDKLVGK
                     AYANGKALNMASYLEIDAVIDPAESRAWLLRGLNAAPAPAPRTGKKRPFVDTW"
BASE COUNT          549 a         1338 c         1427 g          608 t
ORIGIN      
        1 gctccagctt ggtgatggcg tgatagccga tggggtcgac ctcggccggg gcgaagccct
       61 tgcccttctt ggtcaccacg tggaggaatt gcgggccgtc caggtcgcgc atgttgcgca
      121 gggtggtgat cagggtcggc aggtcgtggc cgtcgatggg gccgacgtag ttccagccca
      181 gctcctcgaa cagggtgccg ggcaccagca tgcccttggc gtgctcctcg accttgcgcg
      241 cgatctccca ggcaccgggc aggcgcgaga ggatcttctt gctgccctcg cgcatgctcg
      301 aataggtgcg gctggaaatg atcttggcca ggtagttgga caggccgccg acgttcttgg
      361 agatcgacat gtcgttgtcg ttgagtacga cgagcatgtt ggccttgacg tccgaggcat
      421 ggttgagtgc ctcgaaggcc atgccggcgg tgagcgcgcc gtcgccgatc accgccacgg
      481 ccttgcgcgg gctgccctgc atgcgcgcgg cgatggccat gcccagggcc gcgctgatgc
      541 tggtgctgga gtggccgacg ccgaaggtgt cgtattcgct ctcgccgcgc cgcgggaagg
      601 cggccaggcc gtccttctgg cgcagggtgt tcatgcgctc gcgacggccg gtgaggatct
      661 tgtgcggata ggcctgatgg ccgacgtccc acaccaggcg gtcttccggg gtgtcgagga
      721 cgtagtgcag ggcgatggtc agctcgacca cgccgaggcc ggcgccgaaa tgcccgccgg
      781 tctggccgac gctgtacagc aggtactggc gcagctcgtc ggcaagcgtt tccagctcgc
      841 tttccgccag gcggcgcagg ccgtccggtg tctccgcgct gtccagcagg ggcgtggcgg
      901 ggcgctcacg gggaatctcg tgaaaggtgg tcgacatcag gcgaatcgtt ataggtgtaa
      961 aagatgcggc agtttacctg aagcgccgct cgctgcccaa actgcctcgg tctgctgcgg
     1021 ccccgccggg ggcgccgtgc gcaccgcgcc gcgctggtat cggcggtgcg cgcggcgcac
     1081 actacggccg ctccgggctt aggcgcttgg gtagtggcgg ccgaggaact ccagcagcag
     1141 ggcgctgacc tcttcgccgc gctcgctctg cagccagtgg ccgcagccgg gcaacaggtg
     1201 ctgttccagg cgcggcacct tggcggtcat gcgtttgagt gtcggcgcct cgaagcggcc
     1261 gaccgggtcg cgttcgccga gcaggaacag ggtcggttgc tcgacctgtt catcggccag
     1321 gtgctcggtg cgctgccagt tgcgctcgaa gttgcggtac cagttcagcg cgccgtggaa
     1381 gccgcgaccg gcgaaggtgc gctcgtacac ggcgaacagc tcgggcgggc accaggccgg
     1441 cagaggtagg tcggtgaggc catcgaacag ccgtgcgtcg gccggcttgt cggccagcaa
     1501 cgcgccctcc aggccgccga gcagcaggcg caggctgcgg ccgatgtcgg cgtccagctc
     1561 ggcctcggcc aggcccggct cctggaagta gaggatgtag tggaaacgcc cggcgtaggc
     1621 ctcgcgcatc atctcgatgg ccgggcgcct ggggcgccca ccgaaaggca cggacagcgc
     1681 acccagcgcc tttacccgcg caggttccag cagggccagg tgccaggcca ccggcgcgcc
     1741 ccagtcatgg ccgaccacgg ctacgtcggt ctggccgagg gcatccatgg cgccctggat
     1801 atcgccgcac agggtgatca ggtcgtaggc cgcagggtcg ctcggcgcgc tgctttgccc
     1861 gtagccgcgc atctccgggg cgaacacccg gtagccggcg gcggccagcg cctcgatctg
     1921 tgggtgccag gcataccagc actcggggaa gccgtgcagc agccacaccg ggcgaccgtt
     1981 ggccgggccg gcgctgtaga ggctgagatc gatgccgttg accgccagca gctggtgctc
     2041 gatgtgcatg gtcatgcttc cttaccaggt gtcgacgaag ggccgcttct tgcccgtacg
     2101 cggcgccggg gcgggcgcgg cattgaggcc gcgcagcagc caggcgcggc tctcggccgg
     2161 gtcgatgacg gcatcgatct ccaggtagct ggccatgttc agcgccttgc cgttggcgta
     2221 ggccttgccc accagcttgt cgaacagcgc ctggcgcgcc gcgtcgcttt cctgcgccgc
     2281 cagttccttg gcgaagccca ggcgcaccgc gccctccagg cccatggcgc cgaactcgcc
     2341 actgggccag gcggcggtga acatgggcga gtggaagctg ccggcggcca tggcctgggc
     2401 gcccaggccg tagcccttgc gcagcaccag ggtgaagaag ggcacggtca ggctggccgc
     2461 ggtaacgaac atgcgcgaca cgtggcgcac cgtgccctgc tgctcggcct gcggcccgac
     2521 catgaaaccg ggggtgtcgc acagcgagac gatgggcagg tcgtgcgcct cgcacagctg
     2581 catgaagcgc gcggccttgt cgcccgccac cgcgtcgatg gcgccgccca ggtgggccgg
     2641 gttgttggcg atcaggccgt acggccggcc ttcaatacga atgaaggcgg tgatcaggcc
     2701 gggggcgaac tggcggcgca gctccagcac gctgtccgcg tcggccaggg tggcgatgac
     2761 ctggcggatg tcgtagacgc gcaggcgatt ctccgggatc aggtggcgca gctcgcgctg
     2821 gtcggcgcag cgccagtcgc tttggcggcc ctggaaatac gacaggtact gcctggccac
     2881 ccgtatcgcc tcggcctcgt cctccaccag cgcgtcgatc accccattgg ggccctgcac
     2941 actggtgggg ccgacgtcct cgggcttgta gctgcccagg ccgccaccct cgatcatcgc
     3001 cgggccggcc atgccgatgc tggcgttgcg ggtggcgatg atcacgtcgc agcagccgag
     3061 cagcgcggcg ttgccggcga agcagcggcc ggagaccacg cccacggtcg gcaccaggcc
     3121 ggacagcttg gccatgccga cgaaggtgtg acaatccagg ccggccacgc cgacgaagtc
     3181 ggtatcgccc ggccgcccgc cgccgccctc ggcgaatagc accacgggca ggcgccactg
     3241 ctcggccagg gccagcatgc ggtcggtctt cttgtggttc atcacgccct gggtgccggc
     3301 gaacaccgtg tagtcgtagg cgatggccat gcaacgcgcg gcctgctcgc cgaactgcgc
     3361 ggcgccgacc gtgccgatgc cggccaccag accgtcggcc gggctcagct ccagcagctc
     3421 ctcggcggag cgccggcggc gctgggcggc cagggccatg gcgccgtact cgatgaagct
     3481 gccgtcatcc agcaagtccc ccagattttc acgcacggtg cgctggccgg tcttgcggcg
     3541 cttggccacc gccgcggggc ggcgcgcgtc ggtcagcagc gcgtggcgtt cgagcacttc
     3601 ggcaaggtcg gcgcggatat gttcgaggtc gcggctttcc tcgctgtcgc cgccggtccc
     3661 ggccacctcg gccggctcga ggaacagcag ggcctggccc tcggccaggg cgtcgccggg
     3721 cgcgacggcc agggcgcgga cgatgccgcc acgctcggcg cgcacctcga attccatctt
     3781 catcgcctcc agcacggcga ccacctgccc ggcggccacg gcatcgcctt cggccacctg
     3841 caggacgacc agcacgccgt tgctcggcgc gctcagggcg agggtgccgg gcggggcatc
     3901 gacgccgcgc tgcgccgccg gc
//
LOCUS       DATIHC010000565         2125 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_31937, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000565 DATIHC010000000
VERSION     DATIHC010000565.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2125
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31937"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..434)
                     /locus_tag="VLF16_09265"
     CDS             complement(<1..434)
                     /locus_tag="VLF16_09265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007161668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4130 domain-containing protein"
                     /protein_id="HSX71111.1"
                     /translation="MQSVHFDGSFAGWRREARRLLQAGIEPAALSWRTDDDAGQLFGD
                     PFTEAPTAAPAPLRIPRELPELLESASRYRADDRWALLYRVLWRVAQGDRSAMLAGDR
                     DGSDLQRRVKSVRREAHHMHAFLRFRERPADAGPPRFVAWHEP"
     gene            complement(434..1645)
                     /locus_tag="VLF16_09270"
     CDS             complement(434..1645)
                     /locus_tag="VLF16_09270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014818748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA modification/repair radical SAM
                     protein"
                     /protein_id="HSX71112.1"
                     /translation="MELIDKLTVLADAAKYDASCASSGAPKRDSRGKAGLGATNGMGI
                     CHSFTPDGRCVSLLKVLLTNFCIYDCQYCVNRRSSDVPRARFSPEEVVRLTLDFYRRN
                     CISGLFLSSGIIRSADYTMEQLVRVARLLREEQQFRGYIHLKTIPDAAPELIAEAGRY
                     ADRLSVNIELPSEASLIRLAPEKNVGTIKKAMGSIRLGVDEASEETRGPAFAPAGQST
                     QMIVGADDTDDRTILDTAQTLYGAYKLKRVYYSAFSPIPHSPKSVPFQAPPLLREHRL
                     YQADFLIRGYGFQARELLATPGNLPLDVDPKLAWALANREQFPLDLNRAEPAMIARVP
                     GIGVLSARRLVELRRQRRIRYADVVRLRCAMDKAGPFIVTQDYRPRQATLESSALRRH
                     LSDTPAQMALW"
     gene            1752..>2125
                     /locus_tag="VLF16_09275"
     CDS             1752..>2125
                     /locus_tag="VLF16_09275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017675831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NINE protein"
                     /protein_id="HSX71113.1"
                     /translation="MQRQDTHSKVIGYLLWIFGFLGAHRFYYGKPVTGTIWFFTFGLL
                     FIGWIIDLFLIPAMDREADLRFTAGDTDYNVAWILLTFLGVFGVHRMYQGKWITGIIY
                     LLTGGLFLLGVLYDFWTMNTQIS"
BASE COUNT          321 a          682 c          760 g          362 t
ORIGIN      
        1 ggctcgtgcc aggcgacgaa ccggggtggc ccggcgtcgg cgggccgttc gcgaaagcgc
       61 aggaaggcgt gcatgtgatg ggcctcgcgg cgcacgctct tgacccgccg ctgtaggtcg
      121 ctgccgtccc ggtcgccggc gagcatggcc gagcgatcgc cctgcgccac gcgccagagc
      181 acgcggtaga gcagggccca gcggtcgtcg gcgcgatagc gcgaggcgct ctccagcagc
      241 tcgggcaatt cgcgggggat gcgcagcggc gcgggcgccg cagtcggcgc ctcggtgaac
      301 ggatcaccga acaactggcc ggcatcgtcg tcggtgcgcc agctcagcgc agcgggttcg
      361 atgcccgcct gcaggagtcg ccgtgcctcg cggcgccagc cggcgaaact gccgtcgaag
      421 tgaacactct gcatcaccac agcgccatct gtgccggcgt gtcgctcagg tggcggcgca
      481 aggcggatga ctccagcgtc gcctgccgcg gccggtaatc ctgggtgacg atgaaggggc
      541 cggccttgtc catcgcacag cgcaggcgca ccacgtcggc gtagcggatg cgccgctggc
      601 ggcgcagctc gaccaggcga cgggcgctga gcacgccgat gccgggcacc cgggcgatca
      661 tcgccggctc ggcgcggttg aggtcgagcg gaaactgctc gcggttggcc agagcccagg
      721 ccagcttggg gtcgacatcc aggggcaggt tgcccggcgt ggcgagcagc tcccgggcct
      781 ggaagccgta gccgcgaatg aggaaatcgg cctggtacag ccggtgctcg cgcagcagcg
      841 gcggggcctg gaacggcacg ctcttggggc tgtgcgggat ggggctgaac gccgagtaat
      901 agacgcgctt gagcttgtag gcgccgtaga gcgtctgcgc cgtgtcgagg atggtgcggt
      961 cgtcggtgtc gtcggcaccg acgatcatct gcgtgctctg ccccgcgggg gcgaaggccg
     1021 ggccgcgcgt ctcctcgctg gcctcgtcga cgccgaggcg aatcgagccc atggccttct
     1081 tgatggtgcc gacgttcttc tccggcgcca ggcgtatcag gctggcctcg ctgggcagct
     1141 cgatgttgac gctgagccgg tccgcgtagc gaccggcctc ggcgatcagc tcgggcgctg
     1201 cgtcgggaat ggtcttgagg tggatgtagc cgcggaactg ctgttcctcg cgcagcaggc
     1261 gggcgacccg gaccagctgt tccatggtgt agtcggccga gcggatgatg cccgagctca
     1321 agaacaggcc gctgatgcag ttgcgacggt agaagtcgag ggtcagccgc accacctcct
     1381 cgggtgagaa gcgggcccgc ggcacgtcgc tggaacggcg gttcacgcag tactggcagt
     1441 cgtagatgca gaagttggtc agcagcacct tcagcagcga cacgcagcgc ccgtccggcg
     1501 tgaaactgtg gcagatgccc atgccattgg tggcgcccag gcccgccttg ccgcgcgagt
     1561 cgcgcttggg cgcgccgctg ctggcgcagg aggcgtcgta cttggcggcg tcggccaata
     1621 cggttagctt gtcgatcagt tccatggcga ggtcgagtgc tggtcggata tacagtattc
     1681 gacccgctgc cgttcgacgc aagcgctcgg gctcgccgct catcggcgcg gccccaacac
     1741 gaggatttcc catgcagcga caggacaccc acagcaaggt catcggctat ctgctgtgga
     1801 tcttcggttt tctcggcgcg caccgcttct actatggcaa gccggtgacc gggaccatct
     1861 ggttcttcac cttcggcctg ttgttcatcg gctggatcat cgacctgttc ctgattccgg
     1921 cgatggatcg cgaggccgac ctgcgcttca ccgcgggcga caccgactac aacgtggcgt
     1981 ggatactgct gaccttcctc ggtgtgttcg gcgtgcaccg catgtaccag ggcaaatgga
     2041 tcaccgggat catctacctg ctgaccggcg gcctgttcct gctcggcgtg ctctatgact
     2101 tctggacgat gaacacgcag atctc
//
LOCUS       DATIHC010000566         1508 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10870, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000566 DATIHC010000000
VERSION     DATIHC010000566.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1508
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10870"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1101
                     /locus_tag="VLF16_09280"
     CDS             <1..1101
                     /locus_tag="VLF16_09280"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003249433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSX71114.1"
                     /translation="GYDGPFLDCARQYASLFSGTPHKVLTVYLTGRADAAVEKGSASD
                     EVVFLGYDSRDMRGLKLRAIRDIRRLSRSRSFTLCIAHRFKPTYVACLATALPVIAVN
                     HAFGVYRRRVRQVFARLFRQRLTLLGVSNAVRDDIRACLPGCPVDRIATLYNRLDVAG
                     AEVHLVERREARLALGLPEDAWIVGNVGRLHPDKDQATLIRGFAAALPSLPANSVLAI
                     AGRGRLEKALKSLVADLSIEERTVFLGQVPDVRRYFRAFDAFALSSDHEPFGMVLLEA
                     MVAGVPVICTSCGGGREVAEGVGSLFPLGRPDKLAECLIELSRLSPEQSREIRQAMRQ
                     RLTERFSDRAVRQQFWALPAVKKLMDQSGFCE"
     gene            1098..>1508
                     /locus_tag="VLF16_09285"
     CDS             1098..>1508
                     /locus_tag="VLF16_09285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019825384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6625 family protein"
                     /protein_id="HSX71115.1"
                     /translation="MKEQHTQEGGAPSIRFLIPYFGRWPFWFEFFLESCRRNPSIDWL
                     LFTDCPIPDDAPGNVQFTHIGFDEYCELVSARLGIDFRPRDPYKLCDIKPALGAVHAE
                     ALAGYDFWAFGDIDVVYGDLRRYFTADRLSRKDLF"
BASE COUNT          236 a          468 c          486 g          318 t
ORIGIN      
        1 ggctatgacg ggccgttcct ggactgcgcc cgccaatatg ccagtctgtt ttccggcacg
       61 ccgcacaagg tgctgaccgt gtacctgacc gggcgcgccg atgccgcggt cgaaaagggt
      121 tcggcgtccg atgaggtggt ctttctcggc tacgactcgc gcgacatgcg cggtctcaag
      181 ctgcgggcca ttcgcgacat ccggcgtctg tcccgctcgc gcagcttcac actgtgcatc
      241 gcgcaccgtt tcaagcctac ctatgtggcc tgtctggcca cggcgctgcc ggtcatcgcc
      301 gtgaatcatg ccttcggggt gtatcgtcgg cgtgtccgcc aggtattcgc ccgcctgttc
      361 cgccagcggc tgacgctgct cggtgtctcc aatgcagtgc gtgacgacat ccgagcctgc
      421 ctgcccggct gtccggtcga ccgaattgcc accctctaca acaggctcga tgtggcaggc
      481 gccgaggtgc atctggtcga gcggcgggaa gcgcgtctcg cgctgggcct gcccgaggat
      541 gcctggatcg tcggcaacgt agggcggctg catcccgaca aggatcaggc gacgttgatc
      601 agggggttcg ccgcggcctt gccgagcctg cctgcgaaca gcgtactggc gatagccggc
      661 agagggcgcc tggaaaaggc actgaaaagc ctggttgccg atctctcgat tgaagagcgc
      721 acggtgtttc tcgggcaggt tcctgacgtt cgcagatact tccgcgcctt cgatgcgttc
      781 gccctgagtt cggatcatga gccgttcggc atggtgctgc tcgaggcgat ggtggcaggg
      841 gtccctgtca tctgcacgag ctgtggtgga ggtcgcgaag tggccgaagg tgtcggttcg
      901 ctgttcccgc tggggcgccc cgataagctg gccgaatgcc tgatcgagct ctcgcggctc
      961 tcgcccgagc agtctcgaga gatccgccag gcgatgcggc agcgtctgac ggagcgcttt
     1021 tcagataggg cggtcaggca gcagttttgg gcgctaccgg ccgtgaagaa actcatggat
     1081 caatctggat tttgtgaatg aaggagcagc acactcagga aggcggcgcc cctagcatcc
     1141 gcttcctcat cccctatttc ggccgctggc cgttctggtt cgaattcttt ctggagagct
     1201 gtcgccgcaa ccccagcatc gactggctct tgttcaccga ctgtcccatc ccagatgacg
     1261 cgcccggcaa tgtgcaattc acccacatcg gcttcgacga gtattgcgag ctggtctccg
     1321 cgcgcctggg catcgacttc cggcctcgcg acccctacaa gctgtgcgac atcaagcccg
     1381 ccttgggggc agtgcatgcc gaggcgctgg cgggatacga tttttgggcg ttcggcgata
     1441 tcgatgtcgt ttacggggat cttcgtcggt acttcacggc ggatcgccta agtcgcaagg
     1501 atctgttc
//
LOCUS       DATIHC010000567         1944 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_20219, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000567 DATIHC010000000
VERSION     DATIHC010000567.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1944)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1944)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1944
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20219"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..763
                     /locus_tag="VLF16_09290"
     CDS             <1..763
                     /locus_tag="VLF16_09290"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSX71116.1"
                     /translation="WQAADLRALPKGYIFCGPVGTGKTYLVECLAGEAGVPVVKLKNF
                     RDRWVGSSEGNLEKIFRLIRGLGRCIVFIDEADQTLGKRDAGSGDSGLSGRLYSMIAQ
                     EMGSADNRGRVIWILASSRPDLIEVDLKRPGRVDVKIPLLPTTRVAESAALLRALLKR
                     FDLRLEQAELERQDLPLLLTPGAAEALAVKVYRQVRTARLSPLEALQQCLQGYQPPVP
                     ESVLRLQMQLAIREATDMAFVPESLRALGQEVVEP"
     gene            760..1611
                     /locus_tag="VLF16_09295"
     CDS             760..1611
                     /locus_tag="VLF16_09295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71117.1"
                     /translation="MSLGRYLWAAFTARPLGMPLPPNWFGLAAFGLLGFFVSPGFWVL
                     GAGLELAYLGLLASSKRFRTAVDAGEVRVDPAEQRYEATLALLGDGQRQRQQRIEARA
                     RDVLQLLSRSPLMTAHADSLEQLVWLNLRLLVAGQALSVVVETAAADSAELQRQEDQI
                     DQRLGAAELGAELRRSLEQQKQVIDARQAAHAEGVRRKEHVDAELARIDQQIALIREQ
                     TLLATDEEQIGTALNALTSSFNEASRWLNDQRDLLGVLELNEQQGLPSYVLQGQGSKP
                     TAVAAKH"
     gene            1761..>1944
                     /locus_tag="VLF16_09300"
     CDS             1761..>1944
                     /locus_tag="VLF16_09300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71118.1"
                     /translation="MYLSSLRQRGSAAGKLITIVLVVGLLGLGGWLVSKDMLEKGGDS
                     PLAGLPASMGGSGDAPQ"
BASE COUNT          296 a          659 c          690 g          299 t
ORIGIN      
        1 gtggcaggcc gccgacctgc gcgcgctacc caagggctac atcttttgcg gcccggtggg
       61 caccggcaag acctatctgg tcgaatgcct ggccggcgag gccggtgtgc cggtggttaa
      121 gctgaagaac ttccgcgatc gctgggtcgg ctccagcgag ggcaacctgg agaagatctt
      181 ccgcctgatc cgtggcctcg gccgctgcat cgtgttcatc gacgaggccg accagaccct
      241 cggcaagcgc gacgccggca gcggtgatag cggcctgtcc gggcgcctgt attcgatgat
      301 cgcccaggag atgggcagtg ccgacaaccg cggcagggtc atctggattc tcgcctcctc
      361 gcgcccggac ctgatcgagg tggatctcaa gcgccccggc cgcgtcgacg tgaagattcc
      421 gctgctgccc accacccgcg tggcggagag cgcggcgctg ctgcgcgccc tgctcaagcg
      481 cttcgatctg cggctggagc aggccgaact ggagcggcag gacctgccgc tgctgctcac
      541 ccccggcgcg gccgaggcgc tggcggtcaa ggtctaccgc caggtgcgca cggcgcggct
      601 gtcgccgctg gaggcgctgc agcagtgcct gcagggctac cagccgccgg tgccggagtc
      661 ggtgctgcgc ctgcagatgc agctggctat ccgcgaggcc accgacatgg ccttcgtccc
      721 cgaatccctg cgtgcgctcg gtcaggaggt cgtcgaacca tgagtctcgg ccgctatctg
      781 tgggccgcct tcacggcccg cccgctgggc atgccgttac cgccgaactg gttcggcctg
      841 gccgccttcg gtttgctcgg cttcttcgtc agccccggtt tctgggtgct cggcgccggc
      901 cttgagctgg cgtacctggg cctgctggcc agcagcaaac gcttccgtac ggcggtggat
      961 gccggcgaag tgcgtgtcga cccggccgag caacgctacg aggcgacgct ggcgctgctc
     1021 ggcgacggac agcggcaacg ccagcagcgc atcgaggcac gtgcccgcga cgtgttgcag
     1081 ctgctgtcgc gctcgccgct gatgaccgcc catgccgaca gcctggagca gctggtgtgg
     1141 ctcaatctgc gcctgctggt ggccggccag gccctcagcg tggtggtgga gacggccgcc
     1201 gcggacagtg ccgagctgca gcggcaggag gaccagatcg accagcgcct gggcgccgcc
     1261 gagctgggtg ccgagctgcg ccgcagcctc gagcagcaga aacaggtgat cgacgcgcgc
     1321 caggcggccc atgccgaggg cgtgcggcgc aaggagcacg tggacgccga gcttgcgcgc
     1381 atcgaccagc agatcgcgct gatccgcgag cagaccctgc tggccaccga cgaggagcag
     1441 atcggcacgg cgctcaatgc gctgacctct tccttcaacg aggccagccg ctggctcaac
     1501 gaccagcgcg acctgctcgg cgtactcgaa ctcaacgaac aacagggcct gcccagctac
     1561 gtgctgcagg gccagggcag caagccgacg gcggtcgccg ccaaacactg aatggccggg
     1621 caattgcccg ccgtacccgg atgtaatccg gggccgttgc gcgcggagca tcccggattg
     1681 catccgggct gcggctcggc gtcagcgaag attgcacacg aatggcgggc ccttggctcg
     1741 caacgacagg gagacgcgtc atgtatttat cttctttgcg ccagcgcggt agcgcagccg
     1801 gcaagctgat caccatcgtg ctggtggtgg gcctgctcgg cctgggcggc tggctggtca
     1861 gcaaggacat gctcgagaag ggcggcgaca gcccgctggc cgggctgccg gcgagtatgg
     1921 gcggaagtgg cgatgccccg cagc
//
LOCUS       DATIHC010000568         3082 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_14935, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000568 DATIHC010000000
VERSION     DATIHC010000568.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3082
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14935"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..936)
                     /locus_tag="VLF16_09305"
     CDS             complement(<1..936)
                     /locus_tag="VLF16_09305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HSX71119.1"
                     /translation="MARTTAINRYRNIGICAHVDAGKTTTTERILFYTGLSHKMGEVH
                     DGAATTDWMVQEQERGITITSAAITTFWEGSRGQYDKYRVNVIDTPGHVDFTIEVERS
                     LRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRAGANFLRVVGQIKN
                     RLGHTPVPIQIAIGAEDNFEGQVDLIKMKAIYWNEDDKGTSYREEEIPAELLDLANEW
                     RSNMVEAAAEASEELMNKYLEEGDLSVEDIKAGLRMRTLASEIVPAVCGSSFKNKGVP
                     LVLDAVIDFLPAPTEIPAIQGIHPDHIDDGDEAPKD"
     gene            complement(967..1437)
                     /gene="rpsG"
                     /locus_tag="VLF16_09310"
     CDS             complement(967..1437)
                     /gene="rpsG"
                     /locus_tag="VLF16_09310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HSX71120.1"
                     /translation="MPRRRVAAKREILDDPKYGSLILAKFMNHVMESGKKAVAERIVY
                     GALETVKTRKNTDPLEVFEKALDAIAPLVEVKSRRVGGATYQVPVEVRPSRRNALAMR
                     WLVESARKRGEKSMALRLAGELLDAFDGKGAAVKKREDVHRMAEANKAFSHYRF"
     gene            complement(1542..1913)
                     /gene="rpsL"
                     /locus_tag="VLF16_09315"
     CDS             complement(1542..1913)
                     /gene="rpsL"
                     /locus_tag="VLF16_09315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003093744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HSX71121.1"
                     /translation="MATINQLVRQPRKRLVEKSDVPALQNCPQRRGVCTRVYTTTPKK
                     PNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSL
                     DTTGVKDRKQGRSKYGTKRPK"
     gene            complement(2069..>3082)
                     /locus_tag="VLF16_09320"
     CDS             complement(2069..>3082)
                     /locus_tag="VLF16_09320"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252959.1"
                     /note="DNA-dependent RNA polymerase catalyzes the
                     transcription of DNA into RNA using the four
                     ribonucleoside triphosphates as substrates. Subunit beta'
                     binds to sigma factor allowing it to bind to the -10
                     region of the promoter; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HSX71122.1"
                     /translation="DPKDRPAAGKDIRPAVKLVDANGKELLLPGTDVPAQYFLPANAL
                     VNVNDGAQVGVGDVIARIPQETSKTRDITGGLPRVADLFEARRPKEPSILAEISGTIS
                     FGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSNPHDILR
                     LLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQMLRKVEVTESGDSSFIKGDQM
                     ELTQVLEENEVLTGEDKFIAKFERVLLGITKASLSTESFISAASFQETTRVLTEAAVT
                     GKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRKREADKPQRVSASEVEAALTEALNS
                     SGN"
BASE COUNT          550 a          930 c          937 g          665 t
ORIGIN      
        1 gtctttcgga gcctcgtcac cgtcgtcgat gtgatccggg tggataccct ggatcgcagg
       61 gatctcggtc ggcgccggca ggaagtcgat gacagcgtcg agaaccaggg gaacaccctt
      121 gttcttgaag gacgaaccgc agacagccgg aacgatctcg ctggccaggg tgcgcatgcg
      181 caggccggct ttgatgtcct cgaccgacag atcaccttct tcaaggtact tgttcatcag
      241 ctcttcgctg gcctcggcag ccgcctcgac catgttgctg cgccattcgt tggcgaggtc
      301 gagcagctcg gccggaattt cttcctcgcg gtagctggtg cccttgtcgt cttcgttcca
      361 gtagatagcc ttcatcttga tcaggtcgac ctgaccttcg aagttatctt ccgcaccgat
      421 ggcgatctgg atcggaaccg gggtatgccc caggcggttc ttgatctggc cgacgacgcg
      481 caggaagttg gcgccggcgc ggtccatctt gttcacgtag acgatacgcg gaacaccgta
      541 cttgttggcc tgacgccata cggtttcgga ctgcggctca acgccggagg tgccgcagaa
      601 caccacgaca gcgccgtcca gcacgcgcag ggagcgctca acttcgatgg tgaagtctac
      661 gtgaccgggg gtgtcgatga cgtttacgcg gtacttgtcg tactggccgc gcgaaccttc
      721 ccagaaggtg gtgatcgcag cggaagtgat ggtgatacca cgctcctgct cctgcaccat
      781 ccagtcggtg gtggcagcgc cgtcgtgtac ttcgcccatc ttgtggctga gaccggtgta
      841 gaacaggatc cgctcggtgg tggtggtctt gcccgcgtca acgtgggcgc agataccaat
      901 gttccggtag cggttaattg ctgtagtacg agccataaag ccctcgcaga agaattgttg
      961 ccgtgattag aagcggtagt gcgagaacgc tttgttggcc tcggccatac ggtgaacgtc
     1021 ttcacgcttc ttgacggcgg cgcctttgcc atcgaaggca tccagcagct caccagccag
     1081 gcgcagggcc atggacttct caccacgctt gcgcgcgctt tccaccagcc aacgcatggc
     1141 cagggcattg cgacgggaag gacgaacttc gaccggaacc tggtaggtag caccgcctac
     1201 acggcgggac ttgacttcga ccagcggagc gatggcgtcg agagctttct cgaagacttc
     1261 caggggatcg gtgttcttgc gggtcttgac ggtctccagg gcaccgtaaa cgatgcgctc
     1321 ggcgacggcc ttcttgccgc tttccatcac gtggttcatg aatttggcga gaatcaggct
     1381 tccgtatttc ggatcgtcca gaatctcacg cttagctgct acacgacgtc ttggcatgat
     1441 aagccctcaa acggtcttca ggttagcccg ggaccataac caattggtta cgcccgacct
     1501 tactcttatc gactcaacaa aaagaaaaat ggcgaaccga attacttcgg acgcttggta
     1561 ccgtacttgg aacgaccctg cttacggtct ttgacaccgg tggtgtccag cgagccgcgc
     1621 acggtgtggt aacgcacacc cgggaggtcc tttacacgac cgccgcggat cagcactacg
     1681 ctgtgttcct gcaggttgtg accttcacca ccgatgtagg aggtgacttc gaaaccgttg
     1741 gtcagacgaa cacggcacac cttacgcagt gcggagttcg gtttcttcgg cgtggtggtg
     1801 tacacgcgag tgcacacgcc acgacgctgc gggcagttct gcagcgcagg cacgtcgctc
     1861 ttctcgacga gacgcttgcg cggctggcgt accagctggt tgatagttgc catctataag
     1921 ctccactgtt gtctttcgac gctattgccc taaagcaaaa tggcagagca atcgccctgc
     1981 caaatttagg ggtgcatgag tctaaagaga ctcccgcccc cagtcaaggc gaagccccgg
     2041 gcgacgaatc gcccggggcc ctgcccgatc agttgccgct ggagttcagc gcttcggtca
     2101 gcgccgcttc cacttcgctg gcgctgacgc gttgcggctt gtccgcctcg cgcttgcgct
     2161 tgcgctcgct gtggtaggcc aggccggtgc cggccgggat cagacgaccc accaccacgt
     2221 tttccttcag gccgcgcaag tagtcgcgct tgccggtcac ggccgcttcg gtcagcacgc
     2281 gggtggtttc ctggaaggac gccgcggaga tgaacgactc ggtggacagc gaggccttgg
     2341 tgatacctag cagaacgcgc tcgaacttgg cgatgaactt gtcttcgccg gtcagcactt
     2401 cgttctcttc cagcacctgg gtcagttcca tctggtcgcc cttgatgaag ctggagtcgc
     2461 cggactcggt cacttcgacc ttgcgcagca tctgacgcag gatggtctcg atgtgcttgt
     2521 cgttgatctt cacgccctgc aggcggtaca cgtcctggat ctcgttgacg atgtacttgg
     2581 ccagcgcgct gacacccagc aggcgcagga tgtcgtgcgg gttgctcgga ccgtcggaga
     2641 tcacttcgcc acggttcacc tgttcacctt cgaacacgtt caggtggcgc cacttcggaa
     2701 tcagctcctc gtacggatcg ctgccgtcgg tgggggtgat gaccagacga cgcttgccct
     2761 tggtttcctt gccgaagctg atggtgccgc tgatttccgc caggatggac ggctccttcg
     2821 gacgacgcgc ttcgaacagg tcggcaacgc gcggcagacc accggtgatg tcgcgggtct
     2881 tcgaggtttc ctgcgggata cgagcgatga cgtcacccac acccacctga gcaccgtcgt
     2941 tgacgttgac cagggcgttg gccggcagga agtactgagc cggtacgtcg gtccccggca
     3001 gcagcagttc cttgccattg gcgtcgacca gcttcacggc cggacggatg tccttgccag
     3061 cggccgggcg atccttcgga tc
//
LOCUS       DATIHC010000569         2135 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13147, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000569 DATIHC010000000
VERSION     DATIHC010000569.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2135
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13147"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            224..877
                     /locus_tag="VLF16_09325"
     CDS             224..877
                     /locus_tag="VLF16_09325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007998617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2238 domain-containing protein"
                     /protein_id="HSX71123.1"
                     /translation="MHSDVSTYPTASSPRWALVMLAAALAMLVASGIQPHDRAGWLLE
                     NMLPVALLAGLSLAWHWWRLSAQSYFAMLLLFGVHELGAHFTYAEVPYDEWARQLSGQ
                     SLDQAMEWRRNQYDRLVHFSYGLLFVLPIREVLARLTPLRGAWLLFVAWHLVLSTSAI
                     YELIEWVGGAYLGDDQAEAFLATQEDPWDAQKDMALAALGAGISLAALALVSVRRGP"
     gene            complement(855..1796)
                     /locus_tag="VLF16_09330"
     CDS             complement(855..1796)
                     /locus_tag="VLF16_09330"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020289795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HSX71124.1"
                     /translation="MTTMQAARIDRFGGPEVIHLETLPVPRPQADEVLVRVAAAGIDP
                     VDYKIRQGHLPMIGADQLPLTLGRELAGVVAAVGDGVIGWHEGDRVFAMSGDEGSYAH
                     YARVPAVHLARVPDGLDLELAAAVPLAAHTAWQALFEHGQLEPEERVLIHGGSGGVGH
                     FAIQLAKGRCATVCATGSAASQAFIRQLGADRAIDYERERFEDLGEFDLVIDLVGGET
                     QRRSWAVLAPGGRLVSTLEEPDLTLPEAQGKVGRFFLVQPSGEQLAEIAALIERGQLA
                     PHVDARFPLPRAADAQRHLEETHVEGKVVLVMDHAGR"
BASE COUNT          314 a          760 c          745 g          316 t
ORIGIN      
        1 gtggtggacc ccaacgagcc gctgctgccg cccaagcgca acgacaccta cgccgaacac
       61 ctgcagcagg ccatcgccaa gggcacgccc ggcgccgacg agctgcagca ggccctggcc
      121 cgggaaccct cgcgcagcat gttgaagccc tgagggcggc gaaaaggcgt tgaacgcagg
      181 ctcgcgtcgc gccctctcaa gcgaaacggc gcagggagtt ctcatgcatt cggacgtttc
      241 cacctacccc accgccagct cgccgcgctg ggccttggtc atgctggccg cggccctcgc
      301 catgctggtc gcctccggca tccagcccca cgaccgcgcg ggctggctgc tggaaaacat
      361 gttgcccgtg gcgctgctgg cggggctgag cctggcctgg cactggtggc ggctgtcggc
      421 acagtcctat ttcgccatgc tcctgctgtt cggcgtgcac gagctgggcg cccatttcac
      481 ctatgccgag gtgccctacg acgagtgggc ccggcagctc tccgggcaat cgctggacca
      541 ggccatggag tggcggcgca accagtacga ccgtctggtg cacttcagct acgggctgct
      601 cttcgtgctg ccgatccgcg aggtgctggc gcggcttacg ccgctgcgtg gcgcctggct
      661 gctgttcgtc gcctggcacc tggtgctgtc cacctcggcg atctacgagc tgatcgagtg
      721 ggtcggcggc gcctacctgg gcgacgacca ggccgaggcc ttcctcgcca cccaggaaga
      781 cccctgggac gcgcagaagg acatggccct ggccgcgctc ggcgccggca tcagcctggc
      841 ggcgctggcc ctggtcagcg tccggcgtgg tccatgacca gcaccacctt gccctcgacg
      901 tgggtctctt cgaggtggcg ctgggcgtcc gccgcgcgcg gcagcggaaa acgcgcgtcc
      961 acatgcggtg cgagctgccc gcgctcgatc agcgcggcga tctcggcgag ctgctcgccc
     1021 gagggctgaa ccaggaagaa ccgcccgacc ttgccctgcg cctccggcag cgtcaggtcc
     1081 ggctcctcca gggtcgagac caggcggccg cccggcgcca gcacggccca ggagcgtcgc
     1141 tgggtctcgc cgccgaccag gtcgatgacc aggtcgaact cgcccaggtc ctcgaagcgt
     1201 tcgcgctcgt agtcgatggc gcgatcagcg ccgagctggc ggatgaacgc ctggctcgct
     1261 gcagagccgg tggcgcacac cgtggcgcaa cggcccttgg ccagctggat ggcgaaatgg
     1321 ccgacgccgc cgctgccgcc gtggatcagc acgcgctcct ccggctccag ctggccgtgc
     1381 tcgaacagcg cctgccaggc ggtgtgggca gccagcggca ccgcggcggc caactccagg
     1441 tcgaggccgt ccggcacgcg cgccaggtgt accgccggca cccgcgcgta atgcgcatag
     1501 ctgccctcgt cgccgctcat ggcgaacacc cggtcgccct cgtgccagcc gatcacgccg
     1561 tcgcccaccg ccgcgacgac cccggccagc tcgcggccca gggtgagcgg caactggtct
     1621 gcgccgatca tcggcaggtg gccctggcga atcttgtagt ccaccgggtc gatgccggcg
     1681 gctgccaccc gcaccagcac ctcgtcggcc tgcgggcggg gcacgggaag ggtctcgagg
     1741 tggatgacct cggggccgcc gaagcggtcg atgcgcgcgg cttgcatggt ggtcatggtc
     1801 ggtctccgtt cgctgggaat ggacgggaga ctggtgggcg gcgacggggg ttccaccaac
     1861 ggcctgcccg ccgcctcgct gacgcaacgc ggcacatgtg gccgcagaca gtcccggcgg
     1921 gcgacgaaag gctgcaaaaa agcctgcacc tttgccgccg gggtgcagtc ttttcgacag
     1981 tggcatggtc cgtgaaagaa cccggtgcag ccgggaggta atcgaaaatg ttcaagtgtc
     2041 tgcggtgcga agcaccgatc cgaaagcccc gtgaggccac cgagaacctg ctggtggcgt
     2101 gcggcgaatg cggcgccgag caccgggtgc ggctc
//
LOCUS       DATIHC010000570         2330 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8646, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000570 DATIHC010000000
VERSION     DATIHC010000570.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2330
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8646"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1544
                     /locus_tag="VLF16_09335"
     CDS             <1..1544
                     /locus_tag="VLF16_09335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HSX71125.1"
                     /translation="LARGQELERLQDERDEREAALADLEERLQQLQMTQRQQEEAREQ
                     QRRLVQDESRRQGELKARLSAGQAKAEQLALRRRRLDEEQGEAAEQRELEQEQLGEAR
                     LVLQDALDAMAIDTEQRETLLASRDQLRERLDRVRQEARQHKDHAHQLAVRLGSLRAQ
                     HESTRQALERLELQFERAIERREQLNLNLEEGAAPLEELRMKLEELLERRMGVEDELK
                     LARLALEDADRELRDAEKRRSQAEQQSQLLRGQLEQQRMDWQGLNVRRKALQEQLLEE
                     GYDLLGVLATLPDEASEAAWEQQLEQLAARIGRLGAINLAAIDEYQQQSERKRYLDAQ
                     NADLVEALETLENVIRKIDKETRNRFKETFDQINAGLQALFPKVFGGGHAYLELTGED
                     LLDTGVAIMARPPGKKNSTIHLLSGGEKALTALALVFAIFKLNPAPFCMLDEVDAPLD
                     DANVGRYARLVKEMSETVQFIYITHNKIAMEMADQLMGVTMHEPGCSRLVAVDVEEAM
                     NLVEA"
     gene            1732..>2330
                     /gene="zipA"
                     /locus_tag="VLF16_09340"
     CDS             1732..>2330
                     /gene="zipA"
                     /locus_tag="VLF16_09340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017679222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA"
                     /protein_id="HSX71126.1"
                     /translation="MELRYWLIVIGVIVIVGILFDGWRRMRGGSGKLKFKLDHSFSNL
                     PDDDSDPDLLGPARVIDRKREPEFNEADMPTVSASELNRKRNIEPRQGDLALDADEPV
                     PTLLTPVEEEDDLADMKPSKDLPPVEEVLVINVIARDADGFKGPALLQNILESGLRFG
                     EMDIFHRHESMAGNGEVLFSMANGVKPGTFDLDDFDLFYT"
BASE COUNT          473 a          725 c          772 g          360 t
ORIGIN      
        1 tgctggcccg tggtcaggaa ctcgagcgcc tgcaggacga gcgcgacgaa cgcgaggcgg
       61 cgctggccga tctggaagag cgcctgcagc aactacagat gacccagcgc cagcaggaag
      121 aggcacgcga acagcagcgc cgcctggtgc aggacgaatc ccgccgccag ggcgagctga
      181 aggccaggct ttccgccggc caggccaagg ccgaacagct ggccctgcgc cgtcgtcgcc
      241 tggacgaaga gcagggtgag gccgccgaac agcgcgaact cgagcaggaa cagctgggcg
      301 aggcgcgcct ggtgctgcag gacgcgctgg acgccatggc catcgacacc gagcagcgcg
      361 agaccctgct ggccagccgc gaccagctgc gcgagcgcct cgaccgggta cgccaggagg
      421 cgcgccagca caaggatcac gctcatcagc tggccgtgcg actgggctct ctccgcgccc
      481 agcacgaatc cacccgtcag gccctggagc gtctggaact gcagttcgag cgcgccatcg
      541 agcgccgcga gcagctcaat ctcaatctgg aggaaggcgc cgcgccgctg gaagagctgc
      601 gcatgaagct cgaggagctg ctggagcggc gcatgggcgt cgaggacgaa ctcaagctcg
      661 cccgtctggc cctggaagac gcagaccgcg agctgcgtga tgccgagaag cgtcgcagcc
      721 aggccgagca acagtcgcaa ctgctgcgtg gtcagctgga gcagcagcgc atggactggc
      781 agggcctcaa cgtgcgacgc aaggcgctgc aggagcagct gctggaagag ggctacgacc
      841 tgctcggcgt gctcgccacg ttgccggacg aggccagcga ggcggcctgg gaacagcagc
      901 tggagcagtt ggcggcgcgc atcggccgcc tcggcgcgat caacctcgcg gccatcgacg
      961 aataccagca gcagtccgag cgcaagcgct acctggacgc gcagaacgcc gacctggtgg
     1021 aggcgctgga gaccctggaa aacgtcatcc gcaagatcga caaggaaacg cgcaaccgct
     1081 tcaaggaaac cttcgaccag atcaacgccg gcctgcaggc gctgttcccc aaggtcttcg
     1141 gcggcggcca tgcctacctg gagctgaccg gcgaagatct gctggatacc ggcgtggcga
     1201 tcatggcgcg cccgccgggc aagaagaaca gcaccatcca cctgctctcc ggtggagaga
     1261 aggcactgac cgcgctggcg ctggtattcg ccatcttcaa gttgaacccg gcaccgttct
     1321 gcatgctcga tgaggtggac gcgccgctcg acgacgccaa cgtcggtcgc tatgcgaggt
     1381 tggtcaagga gatgtcggag acggtgcagt tcatctacat cacccacaac aagatcgcca
     1441 tggagatggc cgatcagttg atgggggtga ccatgcacga gccgggttgc tcgcgcctgg
     1501 tggcggtgga cgtggaagag gccatgaacc tggtggaggc ctgaaacttc aggaaatgcc
     1561 cggcgacggt gcacatttac cgttcgtcgt gctagcttag gcctcacttt tattacacgc
     1621 ggattttacc tgtagaaaca tacagttatc cgcgtttcaa gagggcagga agcccttgtt
     1681 ttcattagtt tttcattttt catcttcatc gctcaggggc ttgggattta catggagctg
     1741 cgttattggc tgatcgtcat cggtgtcatc gtcattgtcg ggattctgtt cgacggctgg
     1801 cggaggatgc ggggcggcag cggtaagctg aagttcaagc tggaccacag tttcagcaac
     1861 cttccggatg acgactccga cccggatctg ctcggcccgg cgcgggtcat cgatcgcaag
     1921 cgcgaacccg aattcaacga agcggacatg cccaccgtca gcgccagcga gctcaatcgc
     1981 aagcgcaaca tcgagccgcg ccagggcgac ctggccctgg atgccgacga gccggtcccg
     2041 accctgctga ctccggtgga ggaagaggac gacctggccg acatgaagcc gagcaaggac
     2101 ctgcccccgg tcgaggaagt gctggtaatc aacgtgatcg cccgtgacgc ggacggcttc
     2161 aagggcccgg cactgctgca gaacatcctg gaaagcggcc tgcgcttcgg cgagatggac
     2221 atcttccacc gccacgagag catggccggc aacggcgagg tgctgttctc catggccaac
     2281 ggggtcaagc cgggcacctt cgacctggac gacttcgacc tgttctacac
//
LOCUS       DATIHC010000571         3167 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29507, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000571 DATIHC010000000
VERSION     DATIHC010000571.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3167)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3167)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3167
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29507"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..379)
                     /locus_tag="VLF16_09345"
     CDS             complement(<1..379)
                     /locus_tag="VLF16_09345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016491078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSX71127.1"
                     /translation="MKASHPEVVAASRVNPGETLRKMRESKGLELGEVAVQLNLTAQA
                     LRNLEGGAFDQLPGHTFARGYVRAYAKLMGMDPNRLVNEFDQYTGTDASGSSVASLAR
                     IEEPARVSQSLVKLFSIVALVAIG"
     gene            complement(379..1140)
                     /gene="pilW"
                     /locus_tag="VLF16_09350"
     CDS             complement(379..1140)
                     /gene="pilW"
                     /locus_tag="VLF16_09350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003227892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis/stability protein PilW"
                     /protein_id="HSX71128.1"
                     /translation="MTLRAALYLSLICLLAGCVRTGGQVDPLETEKGRDAARDAYIQL
                     GLGHLQQGATEQAKEPLKKALELDPKSVDAHVMLGLVFQQELEVELADQHFREAISLN
                     PSEARLHNNYGSFLFEQQRYGEALEQFKLASKDPLYPERSRVFENLGLTALQMKNDEQ
                     AKKYFERALRMNSNRPTALLQMAQLSFSEGQYVPARKYYSQYSKISGQNPQSLLLGIR
                     LAKVFQDRDQAASLGLQLKRLYPGTPEYQQYVSEQ"
     gene            complement(1155..2300)
                     /gene="rlmN"
                     /locus_tag="VLF16_09355"
     CDS             complement(1155..2300)
                     /gene="rlmN"
                     /locus_tag="VLF16_09355"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016433 - rRNA (adenine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HSX71129.1"
                     /translation="MSDAVKANLLGMTKPELEQFFESIGEKRFRAGQVMQWIHHFGAE
                     DFDAMSNLGKALREKLKACAEIRGPEIVSQDISTDGTRKWVVRVASGSCVETVYIPQG
                     GRGTLCVSSQAGCALDCSFCSTGKQGFNSDLTAAEIIGQVWIANKSFGTVPAKIDRAI
                     TNVVMMGMGEPLLNFDNVVPAMQIMMEDLGYGISKRKVTLSTSGVVPMIDKLATVTDV
                     SLALSLHAPNDELRNQLVPLNKKYPLSVLLAACRRYIDGLGEKRYLTVEYTLLKDVND
                     QPEHAEQMVALLKDFPCKINLIPFNPFPFSGYERPSNNAIRRFQDLLHKAGFNVTVRT
                     TRGDDIDAACGQLVGQVQDRTRRSERYIAVRQLGSEVTEPRDAANRN"
     gene            complement(2323..2754)
                     /gene="ndk"
                     /locus_tag="VLF16_09360"
     CDS             complement(2323..2754)
                     /gene="ndk"
                     /locus_tag="VLF16_09360"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HSX71130.1"
                     /translation="MAVQRTFSIIKPDAVAKNVVGEITTRFEKAGLRVVASKMVQLSE
                     REAAGFYAEHKERGFFKDLVAFMTSGPVIVQVLEGENAVAKNRELMGATNPKEAAAGT
                     IRADFAVSIDENAVHGSDSEASAAREIAYFFSATELCDRIR"
     gene            complement(2880..3080)
                     /gene="iscX"
                     /locus_tag="VLF16_09365"
     CDS             complement(2880..3080)
                     /gene="iscX"
                     /locus_tag="VLF16_09365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HSX71131.1"
                     /translation="MSLKWTDVLDIAIELADSKPDVDPRYVNFVELHRWVIALPEFAD
                     DPQRGGEKVLEAIQAAWIEERD"
     gene            complement(3095..>3167)
                     /locus_tag="VLF16_09370"
     CDS             complement(3095..>3167)
                     /locus_tag="VLF16_09370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020298472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="2Fe-2S ferredoxin"
                     /protein_id="HSX71132.1"
                     /translation="VGTEDLTVEIPKYSLNHAAEAPH"
BASE COUNT          606 a          943 c          968 g          650 t
ORIGIN      
        1 caccaatggc gaccagcgcg acgatgctga acagcttcac cagactctgc gaaacgcgcg
       61 ccggctcctc gatacgcgcg aggctggcca cgctgctgcc gctggcgtcg gtgccggtgt
      121 actggtcgaa ctcattgacg aggcgattgg ggtccatgcc catgagcttg gcgtacgccc
      181 gcacgtagcc gcgggcgaag gtgtgtcccg gcagctgatc gaaggcaccg ccctcgagat
      241 tgcgcagcgc ctgggcggtg aggttgagct ggaccgccac ctcgccgagc tccaggccct
      301 tgctttcgcg catcttgcgc agcgtttctc cgggattgac ccgggacgcg gcgaccactt
      361 cgggatgcga ggctttcatc actgctccga cacgtattgc tgatattccg gagtgcccgg
      421 atagagtcgc ttcaactgca gcccgaggct ggcggcctgg tcgcgatcct ggaagacctt
      481 ggccaggcga atgccgagca gcaggctctg cgggttctga cctgaaattt tgctgtactg
      541 cgagtagtac ttgcgggcag gcacatactg gccttcagag aatgacaatt gcgccatctg
      601 cagcaaagcg gttggtcgat tactgttcat acgcagagct cgctcgaaat acttcttcgc
      661 ttgctcatcg ttcttcatct gtaacgccgt cagtccgaga ttttcgaaaa cccgggagcg
      721 ttcgggataa agcggatctt tcgaggcaag tttgaactgc tccaatgctt ccccatagcg
      781 ctgctgctcg aagaggaaac tgccgtagtt gttgtgcagt ctcgcttcgc taggatttaa
      841 agaaatggcc tcgcggaagt gctgatccgc aagttcaact tccaactcct gctgaaacac
      901 aagcccgagc atgacatgag catcgacgct cttgggatcc agttccagag ccttcttcaa
      961 aggctccttc gcctgttcag tagctccctg ctgcagatgc cccaatccca actggatata
     1021 ggcgtcgcgt gccgcatccc gccctttctc cgtttccaaa ggatcaacct gtccgccggt
     1081 tctaacacat cctgccaaca ggcagatcag agacagatag agcgcagcgc gcaaggtcat
     1141 ggagttcctc cccttcagtt tcggttggcg gcgtcacgag gctcggtgac ctcgctgccc
     1201 agctggcgca cggcgatgta acgctcgctg cgtcgggtgc ggtcttgcac ctggccgacc
     1261 aattgcccgc aggctgcgtc gatgtcgtcc ccacgggtgg tgcgaacggt gacgttgaag
     1321 ccagccttgt gcaacaggtc ctggaagcgg cgaatggcgt tgttgctcgg ccgttcataa
     1381 ccggaaaagg ggaagggatt aaacggaatc agattgatct tgcaaggaaa atccttgaga
     1441 agtgcgacca tctgctcggc atgctcgggc tgatcgttca catccttgag cagggtgtac
     1501 tcgaccgtca ggtaacgctt ttcgcccaaa ccatcgatgt agcggcgaca ggccgccagc
     1561 agcacggaca gcgggtactt cttgttcagc ggtaccagct gattgcgcaa ctcgtcgttc
     1621 ggtgcgtgca gcgacagggc cagggacacg tcggtgacgg tcgccagctt gtcgatcatc
     1681 ggcaccacgc cggaggtgga caacgtcacc ttacgcttgg aaatgccgta gcccagatcc
     1741 tccatcatga tctgcatggc gggcacgaca ttgtcgaaat tcagcagcgg ttcgcccatg
     1801 cccatcatca ccacgttggt gatggcacgg tcgattttgg ccggtacggt gccgaaggac
     1861 ttattggcga tccatacctg accgatgatt tccgcggcag tcaggtcgct gttgaagccc
     1921 tgcttgccgg tggagcaaaa actgcaatcc agcgcgcagc cggcctgaga agacacacag
     1981 agagtgcctc ggccgccttg cgggatgtac acggtctcga cgcagctgcc ggacgccacg
     2041 cgcaccaccc acttgcgggt gccgtcggtg gaaatgtcct ggctgacgat ctcgggaccg
     2101 cggatctcgg cgcaggcctt gagcttctcg cgcaaggcct tgccgaggtt cgacatggcg
     2161 tcgaaatcct cggcgccgaa gtggtgaatc cactgcatca cctggccggc acggaagcgc
     2221 ttttccccga tcgactcgaa gaactgctcc agttccggct tggtcatgcc cagcaggttg
     2281 gctttcactg cgtcactcat ggattcacct acagcgatgc gatcagcgga tgcggtcgca
     2341 cagctcggta gcggagaaga agtaagcgat ctcgcgagcc gcggaggcct cagagtcgga
     2401 accgtgaacg gcgttctcgt cgatggacac ggcgaagtcg gcgcggatgg tgccggcagc
     2461 ggcttccttc gggttggtgg cgcccatcag ctcacggttc ttggcaacgg cgttctcgcc
     2521 ttccagaacc tggacgatga caggaccgga agtcatgaag gcaaccaaat ccttgaagaa
     2581 gccgcgctcc ttgtgctcgg cgtagaagcc ggcggcctcg cgctcggaca gctggaccat
     2641 cttggaagcg acgacgcgca ggccggcctt ctcgaaacgg gtggtgattt caccgacgac
     2701 gttcttggcg acggcatccg gcttgatgat ggaaaaagta cgttgaacgg ccatttgaag
     2761 ctccagagtt aaagcgaaaa attaaacccg cgaattatac gcgggttagg gagaaatgcg
     2821 tagggcgacg ccccgtagcg gtgcgcgtca gcgcctgctg ccgcgacctc gcgggatttt
     2881 cagtcgcgct cttcgatcca ggcggcctga atggcttcca gcaccttctc gccgccgcgc
     2941 tgcgggtcgt cggcgaattc cgggagggcg attacccagc ggtgcagctc gacgaagttg
     3001 acgtagcgcg ggtcgacgtc cggcttgctg tcggccagtt cgatggcgat atccagcaca
     3061 tcggtccatt tcaggctcat gtcggctcct tgactcagtg cggcgcttcg gcggcgtggt
     3121 tgagcgagta tttcgggatc tcgacggtca ggtcctccgt cccgacg
//
LOCUS       DATIHC010000572         3531 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21739, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000572 DATIHC010000000
VERSION     DATIHC010000572.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3531
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21739"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..593)
                     /locus_tag="VLF16_09375"
     CDS             complement(<1..593)
                     /locus_tag="VLF16_09375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E/G"
                     /protein_id="HSX71133.1"
                     /translation="MSEEILINITPMESRVAVVENGVLQEVHVERTQKRGIVGNIYKG
                     KVVRVLPGMQAAFVDIGLERAAFIHAAEISNREGSAVESIGALVHEGQSLVVQVTKDP
                     IGTKGARLTTHLSIPSRYLVYMPRTAHVGISLKIEDEGERERLKQVVADCVAAEGIEE
                     AGGFILRTAAEGAGQDEILVDIRYLRRLWEQIAAQMKT"
     gene            complement(664..1248)
                     /locus_tag="VLF16_09380"
     CDS             complement(664..1248)
                     /locus_tag="VLF16_09380"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004416173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family protein"
                     /protein_id="HSX71134.1"
                     /translation="MAMLHLASGSPRRRELLAQIGVPFVTLIASIDETALPGEPAERY
                     VERLAREKAQAGLTTLKDKDQAVVLGADTAVVLDGRILGKPESRADALATLAALSGRE
                     HQVLTAVALVDAQRVESRVVASRVRFRTLRPGEAEAYWDTGEPRDKAGSYGIQGLAAV
                     FVSQLEGSYSAVVGLPLCETAQLLEKFGIPCWQA"
     gene            complement(1290..1778)
                     /gene="mreD"
                     /locus_tag="VLF16_09385"
     CDS             complement(1290..1778)
                     /gene="mreD"
                     /locus_tag="VLF16_09385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003177985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HSX71135.1"
                     /translation="MVQAKARNGWMIWASLLLGLLLSVVPLPQFMEIGRPLWLALFLS
                     YWVLALPHRIGMITAWSVGLIEDVLYGSLLGQNALILTLIVFLVLSLQRRLQMFPMWQ
                     QSLVLLVVFGIAQLVQLWLNALTGNRPPTLAFVLPALISALLWPWVFAILRWLQLRFG
                     VR"
     gene            complement(1778..2791)
                     /gene="mreC"
                     /locus_tag="VLF16_09390"
     CDS             complement(1778..2791)
                     /gene="mreC"
                     /locus_tag="VLF16_09390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004881568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HSX71136.1"
                     /translation="MKPLFAKGPSLGVRLLVLVVLSVALMVVDARFEVLQPLRTQVGL
                     ITEPAYRVARLPVTLWEGVTQQFSSRSELMAENEKLKAEGLLMQGRLQKLATLTEQNL
                     RLRELLNSAALVDERVLVTELIGVDPNPFTHRILIDKGERDGVFLGQPVLDARGLMGQ
                     VVEVMPYTARVLLLTDTNHSIPVQVNRNGLRAIAAGTGNPERLELRHVADTADIKEGD
                     LLVSSGMGQRFPAGYPVATVKEVVHDSGQPFAIVRAVPTAALNRSRYMLLVFTDERTP
                     EERATEAAQAQEAADREAAGEPAPATPVQPEAAPSAPTPAQPAAAPAPATPAAPAVER
                     ENQ"
     gene            complement(2872..>3531)
                     /locus_tag="VLF16_09395"
     CDS             complement(2872..>3531)
                     /locus_tag="VLF16_09395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HSX71137.1"
                     /translation="AAINAGARWARLIEEPMAAAIGAGLPVEEARGSMVVDIGGGTTE
                     IALISLNGVVYAESVRVGGDRFDEAIITYVRRNYGSLIGESTAERIKQEIGTAYAGGD
                     VREVDVRGRNLAEGVPRSFTLNSNEVLEALQESLATIVQAVKSALEQSPPELASDIAE
                     RGLVLTGGGALLRDLDKLLAQETGLPVIVAEDPLTCVARGGGRALEMMDRHSMDLLST
                     E"
BASE COUNT          558 a         1211 c         1210 g          552 t
ORIGIN      
        1 gtcttcatct gcgcggcgat ctgctcccac aggcggcgca aatagcggat gtcgaccagg
       61 atctcgtcct gaccggcgcc ttcggccgcg gtacgcagga tgaaaccgcc ggcctcctcg
      121 atgccttcgg cggcgacgca gtcggccacc acctgcttga ggcgttcgcg ctcgccttca
      181 tcctcgatct tcagcgagat gccgacgtga gcggtgcgcg gcatgtagac gaggtagcgg
      241 gacgggatcg acaggtgcgt ggtcagacgc gcgcccttgg tgccgatcgg gtccttggtc
      301 acctgcacca ccaggctctg gccctcgtgg accagggcgc cgatggactc cacggcgctg
      361 ccctcgcggt tggagatctc cgcggcgtgg atgaaggccg cgcgctccag gccgatgtcg
      421 acgaaggccg cctgcatgcc cggcagcacc cgcaccacct tgcccttgta gatgttgccg
      481 acgatgccgc gcttctgcgt gcgctcgaca tgcacctcct gcagcacgcc gttttccacc
      541 accgccacgc gcgactccat cggcgtgatg ttgatcagga tctcttcgct catgcgtcct
      601 actctgcacg gcgcgactgc tggccagggg ccgccgccat acgctctgat tgggtccggc
      661 aggtcaggcc tgccagcatg gaatcccgaa cttctccagc agctgcgcgg tttcgcacag
      721 cggcaggccg accacggccg aatagctgcc ctcgagctgg ctgacgaaca ccgccgccag
      781 cccttgaata ccatagctgc ccgccttgtc ccgcggctcg ccggtgtccc agtaggcctc
      841 ggcctcgccg gggcgcagcg tgcggaaacg cacccggctg gccaccaccc gcgactcgac
      901 gcgctgcgca tcgaccagcg ccacggcggt cagcacctga tgctcgcgac cggacagcgc
      961 ggccagcgtc gccagcgcat cggcgcggct ctccggcttg ccgaggatgc gtccgtcgag
     1021 caccacggcg gtgtcggcgc ccagcaccac ggcctggtcc ttgtccttca gggtcgtcag
     1081 accggcctgc gccttttccc gcgccagacg ctctacatag cgctccgcgg gctcgccggg
     1141 caatgccgtt tcatcgatgg aggcgattag cgtgacgaag ggcacaccga tctgcgccag
     1201 cagctcgcgc cggcgggggg aacccgaggc caggtgaagc atggccatga gacatctccc
     1261 tgtcgcagga atggagggaa aaggcgcgct cagcgcacgc cgaatcgcag ttgcagccag
     1321 cgcaggatgg cgaacaccca gggccagagc aaggcgctga tcagcgccgg cagcacgaag
     1381 gccagggtcg gcgggcggtt gccggtcagc gcgttgagcc acagctgcac cagctgggcg
     1441 atgccgaaca ccaccagcag caccaggctc tgctgccaca tggggaacat ctgcaggcgc
     1501 cgctgcagcg agaggaccag gaacacgatc agcgtgagga tcagcgcgtt ctgcccgagc
     1561 agcgagccgt acagcacgtc ctcgatcagg ccgacggacc acgcggtgat catgccgatg
     1621 cggtgcggca gggccagcac ccagtaggag aggaacagcg ccagccacag cgggcggccg
     1681 atctccatga attgcggcag tggcaccacg ctgagcagca gaccgagcag gaggctggcc
     1741 cagatcatcc agccgttgcg cgccttggcc tggaccatca ttgattctcc cgttcgacgg
     1801 ccggagcggc gggggtggca ggcgccggag cggccgccgg ttgcgccggt gtcggagcgc
     1861 tgggtgccgc ttccggctgc accggcgtgg cgggcgcagg ctcgccggcg gcctcgcggt
     1921 cggcggcttc ctgggcttga gccgcctcgg tggcgcgttc ttcgggcgtg cgctcgtcgg
     1981 tgaacaccag cagcatgtag cggctgcgat tgagcgccgc ggtgggcacg gcgcggacaa
     2041 tggcgaaggg ctggccggag tcgtgcacca cctccttgac cgtggccacc ggatagccgg
     2101 ccgggaagcg ctggcccatg ccggagctga ccagcagatc gccctctttt atatccgccg
     2161 tgtcggccac gtggcgcagc tccaggcgct ccgggttgcc ggtgccggcg gcgatggcgc
     2221 gcaggccgtt gcgattcacc tgcaccggga tgctgtgatt ggtgtcggtg agcagcagca
     2281 cgcgggcggt gtagggcatc acctcgacca cctggcccat caggccgcgg gcatcgagca
     2341 ccggctggcc gaggaacacg ccgtcgcgct cgcccttgtc gatcaggatg cggtgggtga
     2401 acggattggg atcgacgccg atcagctcgg tgaccagcac gcgctcgtcg accagcgcgg
     2461 cggaattcag cagctcgcgc aggcgcaggt tctgctcggt gagggtcgcc agcttctgca
     2521 ggcggccctg catcagcagc ccctcggcct tgagtttctc gttctccgcc atcagttcgc
     2581 tgcggctgct gaactgctgg gtcacgcctt cccacagggt caccggcagg cgcgcgacgc
     2641 ggtaggccgg ctcggtgatc aggccgacct gggtacgcag cggctggagc acctcgaaac
     2701 gcgcatccac caccatcagc gcgacggaaa gcacgaccag caccagcagt cgtacgccca
     2761 gcgacggtcc cttggcgaat agcggtttga tggcgaatcc ccttcagctg gcggctagaa
     2821 aacacaaagc cggaaggttc ggcttccggc ttcggtatac cacgggcgct gtcactcggt
     2881 ggacagcaga tccatggagt gacggtccat catctccagg gcacggccac cgccgcgcgc
     2941 cacgcaggtc agcgggtctt cggcgacgat caccggcagg ccggtttcct gggccagcag
     3001 cttgtccagg tcacgcagca gggcgccacc gccggtcagc accaggccgc gctcggcgat
     3061 gtccgaggcc agctcgggcg gggactgttc cagggcgctc ttcacggcct gaacgatggt
     3121 cgccagggac tcctgcagag cctccagcac ctcgttggaa ttcagggtga agctgcgcgg
     3181 tacgccttcg gccaggttgc ggccgcggac gtcgacttcg cgcacatcgc cgccggcgta
     3241 ggcggtgccg atttcctgct tgatgcgctc ggcggtggat tcgccgatca gcgagccgta
     3301 gttgcggcgc acgtaggtga tgatggcttc gtcgaagcgg tcgccaccga cgcgcacgga
     3361 ctcggcgtag accacgccgt tcagcgagat cagggcgatt tcggtggtgc caccgccgat
     3421 gtcgacgacc atggaaccgc gggcctcttc gaccggcagg ccggcaccga tggcggcggc
     3481 catgggctcc tcgatcagcc gtgcccagcg ggcgccggcg ttgattgccg c
//
LOCUS       DATIHC010000573         2485 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_41490, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000573 DATIHC010000000
VERSION     DATIHC010000573.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2485)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2485)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2485
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41490"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..295
                     /locus_tag="VLF16_09400"
     CDS             <1..295
                     /locus_tag="VLF16_09400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007925366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HSX71138.1"
                     /translation="LKALVEPSHILFGSDFPFAPAPLTTLQCQTLEENPLWSAEQLYG
                     IHRGHALSLFPQYRQADEQMTPTPIYADETFSSRMKRSLTHPVGAFVEHVRSR"
     gene            304..1503
                     /locus_tag="VLF16_09405"
     CDS             304..1503
                     /locus_tag="VLF16_09405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007925366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSX71139.1"
                     /translation="MRRREFVVGAGMLAGASLLADGLPALGAPGIPNQASQYLPETAP
                     HAPTAGRIDVHHHLLPPFYAEALRRQGLQPMAGLSLPQWTPEQSLALLDAQGMQTAIL
                     SLPSPGVWLSDAPAACDLARRCNEYAAELTQRHPGRFGSFAALPLPATERACAEAIHA
                     LDVLEADGVILLASNAGVFLGDPRFEELMAELDRREATVFVHPNLHPSSRTLDLDTPG
                     FLLEFVCDITRAAVNLILTGTLERYPHIRWILAHAGGFLPYAAWRISLANAIPQFQEQ
                     APQGVMSYLQRFYFDTALAPAAPSMAVLRELIEPSQVLFGSDFPFAPASLVEQQLSEL
                     GDASPWSARQLAGIARGHALSLFPRFARRGEVVVAAPRHASESTLHWLGRTATQPLAA
                     LAQRLKD"
     gene            1507..>2485
                     /locus_tag="VLF16_09410"
     CDS             1507..>2485
                     /locus_tag="VLF16_09410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016851639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase/NADH oxidase family
                     protein"
                     /protein_id="HSX71140.1"
                     /translation="MSTLFQPLRLPNGQTIPNRIAKAAMEENLADADHAPGDALIRLY
                     RTWADGGAGLIITGNVMVDRHALTGPAGVVLEDDRQLPRFAAWAQACRSRGAQAWLQI
                     NHPGRQLMAALGQPARGPSAVAVNIPGLEKLFAQPRALSEAEIEELIARYVNTAGLAG
                     RAGFSGVQIHAAHGYLFSQFLSPLTNKRDDQWGGSLQNRARILLRTVAAVRAQVSADF
                     CVAVKLNSADFQRGGFDADDAAAVVQLLNDQGVDLVELSGGSYESPAMQGQTSDGSSL
                     AREAYFLEFAERIAAVARMPLMVTGGIRRRAVAEQVLRGPVAMLGMATAL"
BASE COUNT          384 a          894 c          807 g          400 t
ORIGIN      
        1 actcaaggca ctggtcgagc cctcacacat cctgttcggc agcgacttcc ccttcgcccc
       61 ggcgccgctg accacgctgc agtgccagac cctcgaagag aacccgctgt ggtcggccga
      121 gcagctctac ggcattcatc gtggccatgc gctgagcctg ttcccgcagt accggcaggc
      181 cgacgagcag atgaccccga cgcccatcta tgccgacgaa accttctcca gccgcatgaa
      241 gcgcagcctg acccacccgg tcggcgcctt cgtcgagcat gtgcgcagcc gctgaggtcc
      301 gtgatgagac gacgagaatt cgtggttggc gcaggcatgc tcgccggtgc gtcgctgctg
      361 gccgacggcc tgcctgcact cggtgcgccg ggaatcccga accaggcgtc gcaataccta
      421 ccggagacag cgccgcacgc accgaccgcg gggcgcatcg atgtacacca ccatctgctg
      481 cccccgttct acgccgaggc cctgcgccgc caggggctgc agccaatggc cggattgtcg
      541 ctgccgcaat ggacgccgga gcagtcactg gcgctgctcg atgcccaagg catgcagacg
      601 gcaatcctgt cactgccttc gcccggcgtc tggctctctg atgcacccgc cgcctgcgat
      661 ctggcgcgac gctgcaacga gtatgctgcc gagttgacgc agcgccatcc cggacgcttc
      721 ggcagcttcg ccgcgctgcc gctgccggct accgagcggg cctgcgccga ggcgattcat
      781 gcgctggatg tgctcgaagc cgacggcgtg atactgctcg ccagcaacgc cggggtgttc
      841 ctcggcgatc cacgattcga ggagctgatg gccgaactgg atcgccgcga ggcaaccgtg
      901 ttcgtccatc ccaatctgca cccgagcagc cggacgctgg acctggatac acccggattc
      961 ctgctcgagt tcgtctgcga catcacccgc gccgcggtca acctcatcct caccggcacc
     1021 ctggagcgct atccgcacat ccgctggatt ctcgcccacg ccggcggctt cctgccttac
     1081 gcggcgtggc ggatctcgct cgccaacgcc attccgcagt tccaggagca ggcgccgcaa
     1141 ggggtgatga gctacctgca gcgcttctat ttcgataccg cactggcgcc ggccgcgccg
     1201 tcgatggcgg tgctgcgcga gctgatcgag ccgagccagg tgctgttcgg cagtgacttc
     1261 ccattcgctc cggcgagcct ggtcgagcag cagctctccg aactcggcga cgcctcgccg
     1321 tggtcagcga ggcagttggc cggcatcgcc cgtggccatg cactaagcct ttttccgcgt
     1381 ttcgccaggc gcggtgaagt ggtggtggca gcgccccgtc atgcatccga atccaccctg
     1441 cactggctgg ggcggaccgc cacccaaccg ctcgccgcgc tggcgcagcg cctgaaggac
     1501 tgacccatga gcacactgtt ccagccactg cgcctaccca acggccagac catccccaac
     1561 cgcatcgcca aggccgcgat ggaagagaac ctggccgacg ccgaccatgc ccccggcgac
     1621 gcgctgatcc gcctctatcg gacctgggcc gacggcggcg ctggactgat catcaccggc
     1681 aacgtgatgg tcgaccgtca tgccctgacc ggccctgcgg gcgtggtgct ggaggacgac
     1741 cgccagctgc cccgcttcgc cgcctgggct caggcctgcc gtagccgtgg cgcgcaggcc
     1801 tggctgcaga tcaatcaccc gggccgccag ctgatggccg ccctcggtca gccggcccgc
     1861 ggcccctccg cggtggcggt gaacatcccc ggcctggaga agctgttcgc ccagccgcgc
     1921 gccttgtccg aagccgagat cgaggagctg atcgcccgct acgtgaatac cgccgggctg
     1981 gccgggcgcg ccgggttcag cggcgtgcag attcacgccg cccacggcta cctgttcagc
     2041 cagttcctct cgccactgac caataagcgc gacgaccagt ggggcggcag tctgcagaat
     2101 cgcgcgcgca ttctgctgcg cacggtagcg gcggtgcgcg cccaggtatc ggccgacttc
     2161 tgcgtggcgg tgaagctgaa ctccgccgac tttcagcggg gcggcttcga tgccgatgac
     2221 gcagcggcgg tggtgcagct gctcaatgac cagggtgtgg acctggtcga gctgtctggc
     2281 ggcagctacg agagcccggc gatgcagggc cagactagcg acggcagcag cctggcgcgc
     2341 gaggcctatt tcctcgagtt cgccgagcgt atcgccgcgg tggcgcgcat gccgctgatg
     2401 gtcaccggcg gtattcgccg acgcgcggtg gccgagcagg tactgcgagg gccggtggcg
     2461 atgctgggca tggcgaccgc actgg
//
LOCUS       DATIHC010000574         6582 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29525, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000574 DATIHC010000000
VERSION     DATIHC010000574.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6582
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29525"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            104..493
                     /locus_tag="VLF16_09415"
     CDS             104..493
                     /locus_tag="VLF16_09415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71141.1"
                     /translation="MRDNKKDVAPLKPLSRNTHDWLYAFALVGILLRVGMPLWALPLM
                     SESGFMLLCTSQGMQWQLGDEEGGVSGQQLPCVQCGAHVASLQSFAFMPPAPPVAPAQ
                     RPRFAEALSLAPPLLVAPPGRAPPTFS"
     gene            553..2631
                     /locus_tag="VLF16_09420"
     CDS             553..2631
                     /locus_tag="VLF16_09420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0005375 - copper ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_process: GO:0006825 - copper ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent copper receptor"
                     /protein_id="HSX71142.1"
                     /translation="MTLSVFVPVRAGLPFVLSALTLAMSAPALAATSADAELAPTVVT
                     AVQQSSPLTIHADPKDARQPVPASDATDYLKTIPGFSAIRSGGSNGDPVLRGMFGSRI
                     NLRTNGGLMLGACPYRMDAPSSYISPETFDKLTVIKGPQTVLWGPGASAGTVLFEREP
                     ERFGELGSRLHASLLGGSNGRFDKVLDGAVGNETGYLRFVGNQAQSDDYEDGDGNTVP
                     SRWNKWNGDLAIGWTPDADTLIEFTAGKGDGEARYAGRGMDGAQFERESLGLRFEKSS
                     LGGILDKLEAQLYYNYADHVMDNFSLRQPDPSSMMAMPMASQVDRRTVGGRFAATFVW
                     RDVELVAGMDALRSEHRERNSRYDMMSDRYIDTDAFPWSKDAVMHSYGAFGELTWRVA
                     ERDRLIAGARLDRASAKDYRQSTGGMMSMPNPTADETRADTLPSGFARYEHDLAGSPT
                     TLYVGLGHVQRFPDYWELFSPSTGPAGEVNAFDGIAPEKTTQLDFGVQYNGDDLQAWA
                     SGYVGQVRDYILFDYRGGMMGGSRADNIDARILGGELGVAYDLTDSWKADATLAYAWG
                     KNSSDGEALPQMPPLEARLGLSYERDAWSAGALWRVVSAQHRVDEGRGNVVGQDFGES
                     AGFGVFSLNGAYRVSEHLKLSVGVDNLFDKDYAEHLNLAGDAGFGYPADPVAIDEPGR
                     TLWTKVDIDF"
     gene            2852..3229
                     /locus_tag="VLF16_09425"
     CDS             2852..3229
                     /locus_tag="VLF16_09425"
                     /inference="COORDINATES: protein motif:HMM:NF023446.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3509 domain-containing protein"
                     /protein_id="HSX71143.1"
                     /translation="MQLAIKEFFEAFPAHSVSIKPRPDGMLLLTLSKPNEVPLSKAID
                     SAAIFNQDRVRELIFDVNLSLKLANGQAIEKDDGDRWGLRDLPTFTGGPIHITASRLL
                     VHKRKLELMKKQRHNHELLATAV"
     gene            complement(3309..3485)
                     /locus_tag="VLF16_09430"
     CDS             complement(3309..3485)
                     /locus_tag="VLF16_09430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012075978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="general stress protein"
                     /protein_id="HSX71144.1"
                     /translation="MTTRKGGKHSFADDPQKVSGAGGKGGGQTTGIDVKRDRAERART
                     GGQHSHGDIRRDGH"
     gene            3870..4247
                     /locus_tag="VLF16_09435"
     CDS             3870..4247
                     /locus_tag="VLF16_09435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003098306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HSX71145.1"
                     /translation="MRVGRGGGSGAVLVLCMLLAGCGAEEASKASPSAAQGVPTDTAL
                     AQLYGASCKQCHANPAAGAPLTGDSLAWAPRLEKGMDTLLDHSINGFQGMPPLGLCMQ
                     CSEADFRALIEFMAAAPQPAGGQ"
     gene            4249..5634
                     /locus_tag="VLF16_09440"
     CDS             4249..5634
                     /locus_tag="VLF16_09440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015636125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003885 - D-arabinono-1,4-lactone oxidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-arabinono-1,4-lactone oxidase"
                     /protein_id="HSX71146.1"
                     /translation="MVSRRQLLQRASLLGACLALPGRSLWAAETPRPILWRNWSGVQS
                     CLPLERLAPSGLDELVQVIRKASGKIRPVGSGHSFSALVPTDDTLLSLSHFAGLLAHD
                     AQTLQAEFGSGTPMSTMGAPLKEVGQALINMADTDYQTLAGAIATSTHGTGIGFGSYS
                     SNVCGLQLVSAAGEVLDCSREQNPELFNAARVSLGALGVVTKVRMQNRAAFRLRERQW
                     LGKTEELLEDIDNLKRDNQHWEMLVVTHSDYALSVALNETEDPSTPPVPPDEEGGNGF
                     IDIIEGLDKHLSDSPGLRRSLLNNMRHLASFDDRVDASYEIFANVRNVRFNEMEYSVP
                     AEHGPACLREILKRIDDGNLRTWMPVEYRYVKADDIPLSMFEGRDSCALSIHQHHSMD
                     HRDFFAAIEPIFWKYEGRPHWGKLHSLGARQLAALYPRWREFTELRRELDPHGRFVNA
                     HLAGLFGLAIG"
     gene            5906..>6582
                     /locus_tag="VLF16_09445"
     CDS             5906..>6582
                     /locus_tag="VLF16_09445"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HSX71147.1"
                     /translation="MRPGDRGQPHDAYFQALNQELKANGPMRPSLLIDLDRLDHNIEV
                     VRQFLARSGKQLRLVEKSLPAPGLLRYIGERIGTRKLMSFHQPFLNHDARLFPEADIL
                     LGKPLPVRSAQLFYQQHSGPFDPAKQLQWLIDTPERLQQYLALAQGLGTRLRINIELD
                     VGLHRGGVSDTQTLGQLLQLITDNPQQLEFAGFMGYDPFVGMGVPELLGTPDELLAKV
                     MALYQGHV"
BASE COUNT         1086 a         2238 c         2126 g         1132 t
ORIGIN      
        1 ccgcagccac gggcggcgcg aggagcatcg ccggccacgg attccggggc ggccccgggg
       61 tgcgacgccc tgtcagcagc gtcatcctac atggctgact agaatgcgcg acaacaaaaa
      121 ggatgtcgcc cccctgaaac cgctcagccg aaatacccac gattggctct acgcctttgc
      181 cctggtgggc attctgttgc gcgtgggtat gccgctgtgg gcgctgccgc tgatgagcga
      241 gagcggcttc atgctcctgt gtacctcgca gggcatgcag tggcagcttg gtgacgagga
      301 gggtggcgtc tcgggccagc agttgccctg cgtgcagtgc ggcgcccatg tcgccagcct
      361 gcagtcgttc gctttcatgc cgccagcgcc tccggtggcg ccggcacagc ggccgcgctt
      421 cgccgaggcg ctgagcctgg ccccaccgct cctggtcgcg ccgcccgggc gagcaccgcc
      481 gacgttttcc tgaaagccgc caacacgcgc cctcctcgcg agggctcccg ttgccttttt
      541 tcggaaaaca ccatgactct ctccgtattc gtgccggtgc gcgccggcct gccgttcgtt
      601 ctttccgcac tgaccctggc catgtccgcc ccggccctcg ccgcaacgtc ggccgatgcc
      661 gagctggcgc ccaccgtggt caccgccgtg cagcagagtt cgccgctgac catccacgcc
      721 gaccccaagg acgcccgtca gccggtgccg gccagcgacg ccaccgacta cctcaagacc
      781 attcccggct tctccgccat ccgcagcggc ggcagcaacg gtgatcccgt gctgcgcggc
      841 atgttcggct cgcgcatcaa cctgcgcacc aacggcggcc tgatgctcgg cgcctgtccc
      901 taccgcatgg atgcgcccag ctcctacatc tcgccggaga ccttcgacaa gctcaccgtg
      961 atcaagggcc cgcagaccgt gctctggggc cccggcgcct cggccggcac cgtgctgttc
     1021 gagcgcgagc cagagcgctt cggcgagctc ggttcgcgcc tgcatgccag cctgctgggc
     1081 ggctccaacg gccgcttcga caaggtgctg gacggcgccg tcggcaacga aacgggctat
     1141 ctgcgcttcg tcggcaacca ggcccagtcc gacgattacg aggacggcga cggcaacacc
     1201 gtgccgtcgc gctggaacaa gtggaacggt gacctggcca tcggctggac gcccgatgcc
     1261 gacaccctga tcgaattcac cgccggcaag ggcgacggcg aggcgcgcta cgccgggcgc
     1321 ggcatggacg gtgcgcagtt cgagcgcgag agcctcggcc tgcgcttcga gaagagcagc
     1381 ctcggcggca tcctcgacaa gctggaggcg cagctctact acaactatgc cgaccacgtc
     1441 atggacaact tcagcctgcg ccagccggac ccgagcagca tgatggccat gccgatggcc
     1501 tcgcaggtcg accgtcgcac cgtcggcggg cgctttgccg ccaccttcgt ctggcgcgac
     1561 gtcgagctgg tcgccggcat ggacgccctg cgcagcgagc accgcgagcg caattcccgc
     1621 tacgacatga tgagcgaccg ctacatcgat accgacgcct tcccctggag caaggacgcg
     1681 gtgatgcaca gctacggcgc cttcggcgag ctgacctggc gtgtggccga gcgcgatcgg
     1741 ctgatcgccg gcgcacgcct ggaccgggcc tcggccaagg actaccggca gagcaccggc
     1801 ggcatgatga gcatgcccaa cccgaccgcc gacgagaccc gcgccgacac cctgcccagc
     1861 ggcttcgccc gttacgagca cgacctggcc ggttcgccga ccaccctcta cgtcggcctc
     1921 ggccacgtac agcgcttccc cgactactgg gagctgttct cgccgagcac cggaccggcc
     1981 ggagaggtca acgccttcga cggcatcgcg ccggaaaaga ccacccagct cgatttcggc
     2041 gtgcagtaca acggtgatga cctgcaggcc tgggcctccg gctatgtcgg ccaggtgcgc
     2101 gactacatcc tgttcgacta ccgcggcggc atgatgggcg gctcgcgggc cgacaacatc
     2161 gacgcgcgca tcctgggcgg cgaactgggc gtggcctacg acctcaccga tagctggaag
     2221 gccgatgcga cgctggccta cgcctggggc aagaacagct cggacggcga ggccctgccg
     2281 cagatgccgc cgctggaggc gcgcctcggg ctgagttacg agcgcgacgc ctggagcgct
     2341 ggtgcgctgt ggcgcgtggt gagcgcgcag caccgggtgg acgagggcag gggcaacgtg
     2401 gtcggccagg acttcggcga gagcgccggc ttcggcgtgt tctcgctcaa cggcgcctac
     2461 cgggtgagcg agcatctcaa gctcagtgtc ggcgtcgaca acctgttcga caaggactac
     2521 gccgagcacc tcaacctggc cggcgacgcc ggtttcggct atccggccga tccggtcgcc
     2581 atcgacgagc cgggccgcac cctgtggacc aaggtcgaca tcgacttctg agtcgtcctc
     2641 cacctaacga gagcccgctg caaggcgggc tttgcctttc tgagccgtgc attctgcaaa
     2701 ccccctaagg gcgttcgtgc attctgcacg gcgccagaat gccatcgtga aaagttaagt
     2761 cattgaaatt taaagatttg cctggctttg aaaagttggc acatacgctg cactggtgat
     2821 ggtcccgaga ccaacaatag ggagtagacc gatgcaactc gcgatcaagg aattcttcga
     2881 agccttcccc gctcattccg tttcgatcaa gccccgcccg gatgggatgc tgctgctgac
     2941 cctgtccaag ccgaacgaag tgccgctgag caaggccatc gacagcgccg ccatcttcaa
     3001 tcaggaccgc gtgcgcgagc tgattttcga cgtcaacctg agcctcaagc tggccaacgg
     3061 ccaggccatc gaaaaagacg acggcgaccg ctggggcctg cgcgacctgc cgaccttcac
     3121 cggcggcccg atccacatca ccgcctcgcg cctgctggta cacaagcgca agctggagtt
     3181 gatgaagaag cagcgccaca accacgagct gctggcgacc gccgtttgat tggcggcgcg
     3241 gcgatctggt gaccggaggc acaggaaagg tctccggtag atcaccgctt caatcaatcc
     3301 cctgaaactc aatgtccatc gcggcgaatg tcgccgtggc tgtgctgtcc gcctgtccga
     3361 gcgcgttccg cccgatcccg cttcacatcg atccccgtgg tctgtccgcc acccttgccg
     3421 cctgcgcccg agaccttttg cgggtcatcc gcaaagctgt gcttgccgcc tttgcgcgtt
     3481 gtcatatcgt tgcctcctca atgtcgttcg ccgcgctggt ctccgctctc agcccggcta
     3541 cggttgcgat tgcctaatac gttgccgcca ccctggctag tatttttagt gccgctcttg
     3601 ggcaacacct ccggaccgtg atggaccgta tgcttgccgc ctttggacgt ggtcatgtcg
     3661 cgcctcgctg gttttcctgg ctctcacaat tacgagtcaa aggctcgggg gatgttcaac
     3721 cttccgggcc gggcccgctc gtgtggaagg ccgctgaact ctttcggttt tggccatttc
     3781 ccggttcttg gctggccgtt tgagacctca tccgcccggt gccgctgttt tagtgtggcc
     3841 atgacgaatg agcggcttcg gaggtggcga tgcgggtagg gcggggtggg ggaagcgggg
     3901 cagtgctggt gctgtgcatg ttgctggcgg gctgtggcgc ggaagaggcg tctaaggctt
     3961 cgccaagcgc tgcgcagggc gtaccaacgg atacggcgct ggcccagctg tacggcgcca
     4021 gctgcaagca atgccatgcc aacccggccg ccggtgcgcc gctgaccggc gatagcctgg
     4081 cctgggcgcc gcgcctggag aagggcatgg acaccctgct ggaccacagc atcaatggct
     4141 tccagggcat gcctccattg ggcctgtgta tgcagtgttc ggaggccgac ttccgcgcgc
     4201 tgatcgagtt catggccgcc gcgccgcagc ctgcgggggg ccaatgacat ggtctcccgt
     4261 cgtcagctgt tgcaacgcgc cagcctgctg ggcgcctgcc tggccttgcc ggggcgctcg
     4321 ctgtgggccg cagaaacgcc gcgtcccatt ctctggcgca actggtcggg tgtgcaaagc
     4381 tgcctgccgc tggagcgcct ggcaccatcg ggcctggacg agctggtgca ggtcatccgc
     4441 aaggcttcgg gcaagatccg tccggtcggc tcggggcatt ccttcagcgc gctggtgccc
     4501 accgacgata ccctgctgtc gctgagccac ttcgccgggc tgctggcgca tgacgcgcag
     4561 accctgcagg cggagttcgg cagcggcacg ccgatgtcga ccatgggcgc gccgctgaag
     4621 gaagtcggcc aggcgctgat caacatggcc gataccgact accagaccct ggccggggcg
     4681 atcgccacct cgacccacgg caccggcatc ggcttcggtt cctactcctc caatgtctgc
     4741 ggcctgcagc tggtcagcgc cgccggtgag gtgctcgact gcagccgcga gcagaacccc
     4801 gaactgttca atgcggcgcg cgtctcgctc ggcgcgctgg gcgtggtgac caaggtgcgc
     4861 atgcagaacc gcgccgcctt ccgcctgcgc gaacgccagt ggctgggcaa gaccgaggag
     4921 ttgctggaag acatcgacaa cctcaagcgc gacaaccagc actgggagat gctggtggtg
     4981 acccactccg actatgcact gtcggtggcg ctgaacgaga ccgaggaccc gagcacgccg
     5041 ccggtgccgc cggacgagga gggcggtaac ggcttcatcg acatcatcga ggggctggac
     5101 aagcacctga gcgactcgcc cggcctgcgc cgcagcctgc tcaacaacat gcgccacctg
     5161 gccagcttcg acgaccgggt ggacgcctcc tacgagatct tcgccaacgt gcgcaatgtg
     5221 cgcttcaacg agatggagta ctcggtgccg gccgagcacg gcccggcctg cctgcgcgag
     5281 atcctcaagc gcatcgacga cggcaacctg cgcacctgga tgccggtcga gtaccgctac
     5341 gtgaaggccg acgacatccc cctgagcatg ttcgaggggc gcgacagctg cgcgctgtcg
     5401 atccaccagc accattcgat ggaccatcgc gacttcttcg ccgccatcga gccgatcttc
     5461 tggaaatacg agggccggcc gcactggggc aagctgcaca gcctgggcgc gcgccagctg
     5521 gcggcgctgt atccgcgctg gagggaattc accgagctgc gccgggaact cgacccgcac
     5581 gggcgtttcg tcaatgcgca tctggccggg ctgttcggct tggctattgg ttaagagcct
     5641 atttacgatc tttttcgggc tattcaaggg ggcttatggc cgcggtattt aggccggagc
     5701 agtcagtagc ccggacttca gtccgggaca cctcaggcaa ccccggactg cagtccgggc
     5761 tacggtaccg gacccgcagg ggcgcttcgt caatgcgcat ctggctgggc tattcggtct
     5821 aggtatgggt tagggagcaa ggatgaagcg acgcactctt gtgctggccg gcctgggcgc
     5881 cggcggattg ctggccgctg cctggctgcg cccgggtgat cgcggtcagc cgcacgatgc
     5941 ctatttccag gcgctgaacc aggagctcaa ggccaacggg ccgatgcgcc cgagcctgct
     6001 gatcgatctc gaccgcctcg accacaacat cgaggtggtg cgccagttcc tcgcccgcag
     6061 cggcaagcag ctgcgcctgg tggagaagtc gctgccggca cccgggctgt tgcgctatat
     6121 cggcgagcgc atcggcaccc gcaagctgat gtccttccac caacccttcc tcaatcacga
     6181 tgcacggctg ttccccgagg ccgacatcct gctcggcaag ccgctgccgg tgcgctcggc
     6241 gcagctgttc taccagcagc atagtgggcc cttcgatccg gcgaagcagc tgcagtggct
     6301 gatcgatacg cccgagcgcc tgcagcagta cctggcgctg gcccaggggc tgggcacccg
     6361 gctgcgcatc aatatcgaac tggacgtggg cctgcatcgt ggtggcgtca gcgatacgca
     6421 gacgctgggg caactgctgc agctgattac ggataacccg cagcagctgg agttcgccgg
     6481 cttcatgggt tacgacccct tcgttggcat gggcgtcccg gaactgctcg gcacgccgga
     6541 cgaactgctg gccaaggtga tggcgctgta ccagggccat gt
//
LOCUS       DATIHC010000575         1702 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_868, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000575 DATIHC010000000
VERSION     DATIHC010000575.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1702
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_868"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..971
                     /locus_tag="VLF16_09450"
     CDS             <1..971
                     /locus_tag="VLF16_09450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="beta-ketoacyl synthase N-terminal-like
                     domain-containing protein"
                     /protein_id="HSX71148.1"
                     /translation="QTRRYFAAAGDETLDVRLDRLLGETLGDTPAGDCLLIVASTALD
                     ITELEAQVATDGGFRFEHSTPLDLMAERLRQRHGFADAFTLNTACTSAANGLLYGSRL
                     LASGEYRQVLVLAFETPSAIAQQGFGALDLTSPSGAYRPFHPERDGLVLGECYCTTLL
                     GLEPGPAPLAKLLGGFSACDTSSLTTTREDGSHIDWVMQRALNTAGVEARQIGLAKLH
                     GTATGANDLAESAGMRLLYPEAMPPLVVLKPWLGHTLGACGLSETLLLLAALRQGPLP
                     ALDYTDVALLPLSSEPMAIAPDALLLANFFGFGGNNASLVLQGIAQ"
     gene            968..1525
                     /locus_tag="VLF16_09455"
     CDS             968..1525
                     /locus_tag="VLF16_09455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71149.1"
                     /translation="MKVIAASEIHGSAGLDDKALKAALSQYLASPPRRIDRLIFQALL
                     GAALLKEQVRSDCGLYLASRHPARPTMGALLDAVCVQQRQPKPFEFVNSVSNAAGFHV
                     AQQLGLEGPNLFVGAGPRVWPQLQRLAAPDLADGLVSQALLVVVEDLGDFRVQAVLLE
                     RGEASAPAADFAALTAHVDVKRLDL"
BASE COUNT          280 a          626 c          537 g          259 t
ORIGIN      
        1 agcagacgcg ccgctacttc gccgctgccg gtgacgaaac gctggatgtg cgcctggatc
       61 gcctgctggg cgaaaccctg ggcgacacgc cagccggcga ctgcctgttg atcgtcgcca
      121 gcactgcact ggatatcacc gagctggaag cccaagtggc gaccgacggc ggcttccgct
      181 tcgaacactc cactccgctg gacctgatgg ccgagcgcct gcgccaacgc cacggctttg
      241 ccgatgcctt caccctcaac accgcctgca ccagcgccgc caatggcctg ctctacggtt
      301 cgcgcctgct cgccagcggc gagtaccgcc aggtactggt gctggccttc gagacgccca
      361 gcgccatcgc ccagcagggt ttcggcgccc tcgacctgac cagccccagc ggcgcctatc
      421 ggcccttcca tcccgagcgc gatggcctgg tgctgggcga gtgttactgc accaccctgc
      481 tcggccttga gcccggcccg gcaccgctgg cgaaactgct cggcggcttc agcgcctgcg
      541 acaccagcag cctgaccacc acccgcgagg acggcagcca tatcgactgg gtgatgcaac
      601 gcgcgctgaa caccgccgga gtcgaagcca ggcaaatcgg cctggccaag ctgcacggca
      661 ccgccactgg cgccaacgac ctagccgaga gcgccggcat gcgcctgctc taccccgagg
      721 cgatgccgcc gctggtcgtg ctcaagccct ggctcggcca caccctgggc gcctgcggcc
      781 tgagcgaaac cctgttgctg ctcgccgccc tgcgccaagg cccgctgcca gcgctggact
      841 ataccgacgt ggcgctgctg ccactgtcca gcgagccgat ggcgatcgca cccgacgccc
      901 tgctgctggc caacttcttc ggcttcggcg gcaacaacgc cagcctggtg ctacagggga
      961 tcgcgcaatg aaggtgattg ccgccagcga aatccacggc agcgccggac tcgacgacaa
     1021 ggctctgaag gccgcgctga gccagtacct ggccagcccg ccgcggcgca tcgaccgcct
     1081 gatcttccag gccctgctcg gcgccgccct gctcaaggaa caggtgcgca gcgactgcgg
     1141 cctgtacctg gcctcgcgcc acccggcgcg gccgaccatg ggcgcgctgc tcgacgccgt
     1201 gtgcgtgcaa caacgccagc ccaagccctt cgagttcgtc aacagcgtga gcaacgcagc
     1261 cggcttccat gtcgcccagc aactgggcct ggaagggccg aacctgttcg tcggtgccgg
     1321 accacgggtg tggccgcaat tgcagcgact cgccgcgccg gacctggccg atggcctggt
     1381 cagccaggcg ctgctggtgg tggtcgagga cttgggcgat ttccgtgtgc aggcggtgct
     1441 actggagcgt ggagaagcga gcgcgccagc agcagacttt gcggcgctta cagcgcatgt
     1501 cgatgtgaag cggctcgacc tgtaacgcag gtcaggccgt agggtggatg acgctttgct
     1561 catccaccac cagcccgcat ggtggatcga taagcgcgat ccaccctacc caatcaggcc
     1621 ggagtcagcc cttgcgcttg ctccaggcgc ccagcgcgcc ctcggtagcc cggatgaaat
     1681 ccgggaaagc ttcagtccgc cc
//
LOCUS       DATIHC010000576         5110 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_6388, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000576 DATIHC010000000
VERSION     DATIHC010000576.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5110
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6388"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..344)
                     /locus_tag="VLF16_09460"
     CDS             complement(<1..344)
                     /locus_tag="VLF16_09460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71150.1"
                     /translation="MNSNALRAQPTLASRLAIPALLFGLLLPFGATAEEAAPVAQQPA
                     ATAPSTAPTDAAGTTTPAAPTAEQAPTVATHPQAEALKAKLDALGEQATPEQREAARQ
                     EFLQQNGIAGTDA"
     gene            508..1362
                     /locus_tag="VLF16_09465"
     CDS             508..1362
                     /locus_tag="VLF16_09465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012077946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HSX71151.1"
                     /translation="MSKTLMIAGCGDVGSRLARCLAPSGWTLYGLRRDVARLPAEVLP
                     VAGDLQQPVCPAAWPQGELDYLVYSAAASQHDEAGYRSAYVDGLCNVLGWLAERGQRP
                     RRLVFVSSSGVYGQAGGEWLDERSPAEAQGYSGRIMREAEELALASGLPATLVRLTGI
                     YGPGRQWLLNQVRQGYRVASEPPLYANRIHADDAAGLLAFLLRADAEGAELADCYLGV
                     DDEPAPLHEVVGWLRERLGVTEWAEESSVRRAGSKRCSNARARALGWAPQYPSYREGY
                     AAVLSEAV"
     gene            complement(1359..2090)
                     /locus_tag="VLF16_09470"
     CDS             complement(1359..2090)
                     /locus_tag="VLF16_09470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017520703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71152.1"
                     /translation="MRRLLAIALAAGLSAGCAGPQSPDGTWINQPIIDAARDGIPLRE
                     ALLAHGPNLEWRLDSQRGLATYSNGFELPEGRLEAGEPGRWRVDYQGDYQEQLEVQGE
                     ALIQLASAQGPEQRFARPEHVAEAGAPVDSSFEWALYQAYLGGEWTIREGVGEGGLVL
                     FHPDGRLEGLPGAERYALCLAGDCASMAGEHDSLWLQLGNQGAPWLFERDGDRLRILE
                     ALNQSAPDEVPSYRPGRQAWLLERD"
     gene            complement(2096..2476)
                     /locus_tag="VLF16_09475"
     CDS             complement(2096..2476)
                     /locus_tag="VLF16_09475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HSX71153.1"
                     /translation="MSKTVITSPNAPAAIGTYSQAIKAGNTVYLSGQIPLDPKTMELV
                     QGFEEQTVQVFENLKAVIEEAGGSFKDVVKLNIFLTDLSHFAKVNEVMGRYFEQPYPA
                     RAAIGVASLPRGAQVEMDGILVLD"
     gene            complement(2515..4626)
                     /gene="spoT"
                     /locus_tag="VLF16_09480"
     CDS             complement(2515..4626)
                     /gene="spoT"
                     /locus_tag="VLF16_09480"
                     /EC_number="2.7.6.5"
                     /EC_number="3.1.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008728 - GTP diphosphokinase activity
                     [Evidence IEA];
                     GO_function: GO:0008893 - guanosine-3',5'-bis(diphosphate)
                     3'-diphosphatase activity [Evidence IEA];
                     GO_process: GO:0015969 - guanosine tetraphosphate
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional GTP
                     diphosphokinase/guanosine-3',5'-bis pyrophosphate
                     3'-pyrophosphohydrolase"
                     /protein_id="HSX71154.1"
                     /translation="MPSIDTLADRLSTYLAADQVNLVRRAYFYAEQAHDGQRRRSGEA
                     YVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALTAQFGETVSELVDGVSK
                     LTQMDFQSKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAK
                     ETLEIYAPIANRLGMHSMRVEFEDLGFKAMHPMRSERIRTAVKRARGNRKEIVAKIEE
                     SITAYLQREGMEGEVIGREKHLYSIYQKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRA
                     LGVVHNLYKPLPGRFKDYIAIPKANGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNG
                     IAAHWLYKSDGDDTPKGNHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVF
                     TPKGRIMELPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSQALESGSTVEIVTAP
                     GARPNPAWLNFVVTGKARTHIRHALKQQRRSESISLGERLLNKALTGFDSHLEKISAE
                     RIQAVLGEYRLEVIEDLLEDIGLGNRMGYVVARRLLAETGEAASPSQDGPLAIRGTEG
                     LVLNYAKCCTPIPGDPIVGHLSAGKGIVVHLETCRNIADIRHNPEKCIQLNWAKDVAG
                     EFNVELRVELEHQRGLIALLASSVNAADGNIEKIGMDERDGRISVVQLVISVHDRVHL
                     ARVIKKLRALKGVIRITRMRA"
     gene            complement(4689..4955)
                     /gene="rpoZ"
                     /locus_tag="VLF16_09485"
     CDS             complement(4689..4955)
                     /gene="rpoZ"
                     /locus_tag="VLF16_09485"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HSX71155.1"
                     /translation="MARVTVEDCLENVDNRFELVMLATKRARQLATGGKEPKVAWEND
                     KPTVVALREIASKLVDAEFVAQEDIVEEEPLFAAAFEEEANEPL"
BASE COUNT          712 a         1617 c         1864 g          917 t
ORIGIN      
        1 gcatcggtgc cggcgatgcc gttctgctgc aggaattcct ggcgagccgc ttcgcgctgc
       61 tcgggggtgg cctgctcgcc cagggcgtcc agcttggcct tgagtgcctc ggcctgcgga
      121 tgggtggcca cggtcggcgc ctgttccgcg gtcggcgccg ccggggtggt ggtgcccgcg
      181 gcgtcggtcg gagcggtgct cggcgcggta gcggccggct gctgggcgac cggggcggct
      241 tcctcggccg tcgcgccgaa cggcagcaga aggccgaaca gcagcgccgg aatggcgagg
      301 cgggaagcga gggttggctg ggcgcggagg gcgttagaat tcatgctggc cggacctgaa
      361 gtgagggagg tcgcacgggt cggaatgcga ccccgtgcaa aaaaggcctg tattattgca
      421 agtaattctt gtttgtgaaa gcaataatgt aacttttcta cccggcccgc gcgccgtcca
      481 tttccgcact ccggaggtag caccaccatg tccaagaccc tgatgatcgc cggctgcggt
      541 gatgtcggca gccgcctggc ccgctgcctg gcgccgtccg gctggaccct ttacggtctg
      601 cggcgtgatg tcgcgaggct gcccgcggag gtcctgccgg tggccggtga cctgcagcaa
      661 ccggtgtgcc cggccgcctg gccgcaaggc gagctggact acctggtgta cagcgcggcg
      721 gccagccagc acgacgaggc gggttaccgc agcgcttatg tcgacggcct gtgcaacgtg
      781 ctgggctggc tggccgagcg tggccagcgg ccgcggcgcc tggtgttcgt ctcgagcagc
      841 ggggtctacg gtcaggccgg cggcgagtgg ctcgacgagc gctccccggc cgaggcccag
      901 ggctattccg gccggatcat gcgcgaggcc gaggagctgg ccctggccag cggcctgccg
      961 gccaccctgg tgcgcctgac cggcatctac ggccccggtc gccagtggct gctcaaccag
     1021 gtccgccagg gttatcgggt ggccagcgag ccgccgctgt acgccaaccg catccatgcc
     1081 gacgatgccg ccggcctgct ggccttcctg ttgcgcgccg acgccgaggg cgccgaactg
     1141 gccgactgct acctgggcgt ggatgacgag ccggcgccgc tgcacgaagt agtcggctgg
     1201 ctgcgcgagc gcctcggcgt gaccgaatgg gccgaggaga gcagcgtgcg tcgcgccggc
     1261 agcaagcgtt gcagcaacgc ccgcgcccgt gccctgggct gggcgccgca gtaccccagc
     1321 taccgcgagg gctatgccgc agtgctgagc gaggcggttt agtcgcgttc cagcagccag
     1381 gcctggcgcc cggggcggta gctgggcacc tcgtccgggg cggactggtt gagcgcttcg
     1441 aggatgcgta ggcgatcgcc gtcgcgctcg aacagccagg gcgcgccctg gttgccgagc
     1501 tgcagccaga ggctgtcgtg ctcaccggcc atggaggcgc agtcgccggc caggcacagt
     1561 gcgtagcgct cggcgccggg caatccctcg agccggccat cggggtggaa cagcaccagg
     1621 ccgccctcgc cgacgccctc gcggatcgtc cattctccgc ccaggtaggc ctggtacagc
     1681 gcccattcga agctgctgtc gaccggtgcg ccggcctcgg ccacatgctc cggccgggcg
     1741 aagcgctgct cggggccctg ggcgctggcc agctggatca gcgcttcgcc ctgcacctcg
     1801 agctgctcct gatagtcgcc ctggtagtcg acccgccagc gtcccggctc gccggcctcg
     1861 agacgccctt ccggcagctc gaaaccgttg ctgtaggtgg ccaggccgcg ctggctgtcc
     1921 agccgccatt ccaggttggg gccgtgggcc agcagcgcct cgcgcagggg aatgccgtcg
     1981 cgggcggcgt cgatgatcgg ctggttgatc caggtgccgt ccgggctctg cgggccggca
     2041 cagccggccg acaggccggc ggccagggcg atcgcgagca ggcggcgcat gggaatcagt
     2101 cgaggaccag gatgccgtcc atctcgacct gcgcgccgcg cggcagggag gccacgccga
     2161 tggcggcgcg ggccgggtag ggctgctcga agtagcggcc catgacctcg ttgaccttgg
     2221 cgaaatggct caggtcggtg aggaagatgt tcagcttgac cacgtccttg aacgagccac
     2281 cggcctcttc gatcaccgcc ttgaggttct cgaacacctg caccgtctgc tcctcgaagc
     2341 cctgcaccag ctccatggtc ttcgggtcca gcgggatctg gcccgacagg tagacagtgt
     2401 tgccggcctt gatcgcctgg gaataggtgc cgatggcggc gggggcgttg ggcgaggtga
     2461 tgacggtctt gctcatggga actccgattc cagagggtgg gatgtgcggt gggatcaggc
     2521 gcgcatgcgg gtgatgcgga tgacgccctt gagcgcgcgc agcttcttga tgacgcgggc
     2581 caggtgcacg cggtcatgca cgctgatgac cagctggacg acgctgatgc ggccgtcgcg
     2641 ttcgtccatg ccgatcttct cgatgttgcc gtcggcggcg ttgacgctgc tggccagcag
     2701 ggcgatcagg ccgcgctggt gttccagctc gacgcgcagc tcgacgttga actcgccggc
     2761 cacgtccttg gcccagttga gctggatgca cttttccggg ttgtggcgga tgtcggcgat
     2821 gttccggcag gtttccaggt gcaccacgat gcccttgccg gcggacagat ggccgacgat
     2881 ggggtcgccg gggatcggcg tgcagcactt ggcgtagttg agcaccaggc cctcggtacc
     2941 gcggatggcc agcgggccgt cctggctggg cgaggcggcc tcgccggtct cggcgagcag
     3001 gcggcgggcg accacgtaac ccatgcgatt gcccaggccg atgtcttcca gcaggtcctc
     3061 gatcacctcc agacggtatt cgccgagcac ggcctggatg cgctccgcgc tgatcttctc
     3121 caggtggctg tcgaagccgg tgagggcctt gttcagcagg cgctcgccca ggctgatgga
     3181 ctcggagcgg cgctgctgct tgagggcgtg gcggatgtgc gtgcgcgcct tgccggtgac
     3241 cacgaaattg agccaggccg ggttcggccg tgcgccgggg gcggtgacga tctccaccgt
     3301 cgagccgctc tccagggcct gcgacagcgg cgccaggcgg cggttgatgc ggcaggcgat
     3361 gcagctgttg ccgacgtcgg tgtgcacggc gtaggcgaag tcgaccgcgg tggagccctt
     3421 cggcagctcc atgatgcggc ccttgggcgt gaacacgtag acctcgtccg ggaacaggtc
     3481 gatcttcacg ctctcgatga attccagcga gttgccggca cgctgctgca tctccagcac
     3541 gcccttgacc cactggcggg cgcgggcgtg gttgcccttg ggcgtgtcgt cgccgtcgga
     3601 cttgtacagc cagtgggcgg cgatgccgtt gttggccatc tcctccatct cgcgggtgcg
     3661 gatctggatc tcgatgggca cgccgtgcat gccgaacagg gtggtgtgca gcgactggta
     3721 gccgttggcc ttggggatcg cgatgtagtc cttgaagcgg cccggcaggg gtttgtacag
     3781 gttgtgcacc acgccgaggg cgcggtagca ggtgtcgacc ttgtcgacga tgatgcggaa
     3841 ggcgtagacg tccatgatct cgttgaacgc ccggcgcttg ccgcgcatct tctggtagat
     3901 gctgtagagg tgcttctcgc ggccgatcac ctcgccttcc atgccctcgc gctgcaggta
     3961 ggcggtgatc gattcctcga tcttggcgac gatttccttg cggttgccgc gggcgcgctt
     4021 gaccgcggtg cggatgcgct cggagcgcat cgggtgcatg gccttgaagc cgaggtcctc
     4081 gaactccacg cgcatgctgt gcatgcccag ccggttggcg atgggtgcgt agatttccag
     4141 ggtttccttg gcgatgcgcc ggcgcttctc gccggacagc acttccagcg tgcgcatgtt
     4201 gtgcaggcgg tcggcgagct tgaccaggat cacgcggatg tcgcgtgcca tggccatggc
     4261 catcttctgg aagttctcgg cctgagcctc ggccttggac tggaagtcca tctgggtcag
     4321 cttgctgacg ccgtccacca gctcggagac ggtctcgccg aactgggcgg tgagggcttc
     4381 cttggcgata ccggtgtcct cgatcacgtc gtgcagcatc gcggccatca ggctctgatg
     4441 gtccatgtgc atgtcggcga ggatattggc gacggcgagc gggtgggtga cgtaggcttc
     4501 gccgctgcgg cggcgctgcc cgtcgtgggc ctgctcggcg tagaagtagg cgcggcggac
     4561 caggttgacc tgatccgcgg ccaggtaggt cgaaagtcgg tcggcgaggg tgtctatgct
     4621 cggcacggga tcaccccctg ccgagtcggc gcgttacccg gtgccgcgtg gcttcgacca
     4681 ggcatgactt acagaggctc gttggcctct tcctcgaagg cggcggcgaa cagcggctct
     4741 tcctcgacga tgtcttcctg ggcgacgaac tcggcgtcca ccagtttgct ggcaatttca
     4801 cgcagggcga cgacggtcgg cttgtcgttt tcccaggcga ccttcggctc cttgccgccg
     4861 gtggccagct gacgggcgcg cttggtggcc agcatgacca gctcgaagcg gttgtctacg
     4921 ttctccaggc agtcttcaac ggtaacgcgg gccatggtga tcctcgtggc aaatagcaaa
     4981 taaggctggg cccggatggg cgagcggact ggatagtcta aaaaatcacc agcgtttagg
     5041 gaagccccat ggcatcggtg ttgggctcgc gagccgagag aggccaggca aacggcgccg
     5101 cggaggctga
//
LOCUS       DATIHC010000577         3968 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8699, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000577 DATIHC010000000
VERSION     DATIHC010000577.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3968
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8699"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(15..782)
                     /locus_tag="VLF16_09490"
     CDS             complement(15..782)
                     /locus_tag="VLF16_09490"
                     /EC_number="2.3.1.286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017940214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0017136 - NAD-dependent histone
                     deacetylase activity [Evidence IEA];
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacylase"
                     /protein_id="HSX71156.1"
                     /translation="MQQDIIRVAQAIQRAERILIITGAGLSADSGLPTYRGLGGLYNG
                     LTAEGLPIEAALSGPMLQRDPALCWKYLAQLGEACLGASPNAGHAAIAELQRRKPGCW
                     VLTQNIDGYHRQAGSPVERLIEIHGELAPLFCQSCGAEDPDLAAHLKKPLLPRCARCG
                     GVLRPPVVLFEEMLPEDAIGRLYDQVHQGFDVVIAVGTTASFPYIVEPVAEARRSGGF
                     TAEVNPQQTDISRWVDVHLRGRASDVLPELLGHIPGH"
     gene            complement(818..1489)
                     /locus_tag="VLF16_09495"
     CDS             complement(818..1489)
                     /locus_tag="VLF16_09495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HSX71157.1"
                     /translation="MRDYQWLHEYCLNRFGSAAALEARLPQPKNDAELRQLSDDRYLS
                     LIALRVFRAGLKHSLVDAKWPAFEQVFFGFDPQKVVLMGAEHLERLMQDARLIRHLGK
                     LKSVPRNAQFILDVQKDKGSFGALIADWPASDIVGLWKYLAKHGNQLGGLSAPRFLRM
                     VGKDTFIPTDDMVAALKAQEIIEKAPTSQKDLALVQAAFNQWHAQSGRPLCQLSVMLA
                     HTVNH"
     gene            1560..1856
                     /locus_tag="VLF16_09500"
     CDS             1560..1856
                     /locus_tag="VLF16_09500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71158.1"
                     /translation="MNDPVESFFTQCQAVLAGDAALLAQLQAAGFDCQAGYWAFRLPQ
                     LQQWLAPQLDYPRFRQALYASELNTRLKELGGEIAIADNQGNSDLSLYCLRRLS"
     gene            complement(1825..2592)
                     /gene="cobM"
                     /locus_tag="VLF16_09505"
     CDS             complement(1825..2592)
                     /gene="cobM"
                     /locus_tag="VLF16_09505"
                     /EC_number="2.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003464890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0046026 - precorrin-4
                     C11-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-4 C(11)-methyltransferase"
                     /protein_id="HSX71159.1"
                     /translation="MTVYFIGAGPGDPELITVKGQRLIRSCPVILYAGSLVPEAVLQG
                     HSAEQVVNTAELHLQQIVTLLAEAHARGQDVARVHSGDPSLYGAIGEQIRELRALQIP
                     FEIVPGVTATTACAALLEAELTLPEVAQTVILTRYGHNSPMPAGEELGALASHCATLA
                     IHLGVQHLPRIVTELLPHYGADCPIAVVHRASWPDQDWVLGTLADIEARVAAKGFRRT
                     ALILVGWVLQAADFGESALYAEATRHLFRKDGAGSTD"
     gene            complement(2783..3169)
                     /locus_tag="VLF16_09510"
     CDS             complement(2783..3169)
                     /locus_tag="VLF16_09510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015475373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HSX71160.1"
                     /translation="MIVAGLGCRRGCTAAELRELLEQTLEQLALPLSALDGLASSALK
                     RDEAGLLLLAAELELPLDFFSAEQLSAHESQLSEGSAFVRELTGSTSVAEASALAGAS
                     ARSGRVAALICPKQRSTAATLAIARA"
     gene            complement(3174..3896)
                     /locus_tag="VLF16_09515"
     CDS             complement(3174..3896)
                     /locus_tag="VLF16_09515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013793514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtA family protein"
                     /protein_id="HSX71161.1"
                     /translation="MIKRIAQTAGFSGLLAAIVLTLLQSLWVTPLILHAETFETAEPT
                     AEHSHEAPVAAHEHEHQEASGHSHDGEAWAPEDGWQRTLATGLSNLVVAVGFALMLAG
                     LFTLRAPNQTWQGLLWGLGGFAVFSLAPSAGLSPELPGTAAADLLLRQYWWIGTAVAT
                     AAGLGLIAFGRNWALRGVGLVLLAVPHLIGAPHPEVHESLAPAALEREFILASLLTNA
                     VFWSALGLAAAWFFARGEQQDT"
BASE COUNT          692 a         1309 c         1333 g          634 t
ORIGIN      
        1 ggtgatttgc aaattcaatg cccgggaatg tgacccaata gttccggcaa aacgtctgac
       61 gcccgccctc tcaaatggac atccacccag cgactgatat cggtctgctg agggtttact
      121 tcggcggtga aacccccgct acgtctggcc tcggcgacag gttcgacgat gtagggaaag
      181 cttgcggtag tgcccaccgc gataactaca tcgaagccct gatgcacctg gtcataaagc
      241 cgaccaatgg catcctccgg cagcatctcc tcgaacagca ccaccggcgg gcgcagcacg
      301 cccccgcatc gagcacagcg cggcagcaga ggctttttca ggtgcgcggc cagatcggga
      361 tcctccgccc cgcaggactg acagaacagc ggcgccagct cgccgtgaat ctcgatcagc
      421 cgctcgaccg gcgagcccgc ctggcggtgg tagccgtcga tgttctgcgt cagcacccag
      481 caccccggct tgcgccgctg cagctcggcg atggcagcat gcccggcgtt ggggctggcg
      541 cccaggcagg cctcgccgag ctgggccagg tacttccagc acagcgccgg atcacgctgc
      601 agcatcggcc cggacagcgc tgcctcgatc ggcaggccct cggcggtcag gccgttgtac
      661 aggccaccga ggccgcggta ggtaggcagc ccggaatccg ccgagagccc ggcgccggtg
      721 atgatcagga tgcgctcggc acgctggatg gcctgggcga cgcggatgat gtcctgttgc
      781 atgcctgctt cctcccactg cgaatcacgc cctaacgtta gtggttaacg gtatgcgcca
      841 gcattaccga cagctggcac agcggtcggc cgctctgcgc gtgccactgg ttgaaggcgg
      901 cctgcaccag ggccaggtcc ttctggctgg tcggcgcctt ttcgatgatt tcctgggcct
      961 tgagcgccgc gaccatgtca tcggtgggga tgaaggtgtc cttaccgacc atgcgcagga
     1021 aacgcggtgc cgacaggccg ccgagctggt tgccgtgctt ggccaggtat ttccacaggc
     1081 caacgatatc gctcgccggc cagtcggcga tcagcgcgcc gaagctgccc ttgtccttct
     1141 gtacatcgag aatgaactgc gcgttgcgcg gcacgctctt gagcttgccc agatggcgga
     1201 tcagccgcgc gtcctgcatc agccgctcca gatgctcggc gcccatcagc accaccttct
     1261 gcgggtcgaa gccgaagaac acctgctcga aggccggcca cttggcgtcc accaggctgt
     1321 gcttgaggcc ggcgcgaaac acccgcaggg cgatcagcga cagatagcgg tcatcgctca
     1381 gctggcgcag ctcggcgtcg ttcttcggtt gcggcaacct ggcctccagc gccgcggccg
     1441 agccgaagcg gttgaggcag tattcgtgca gccactgata gtcacgcatg agaaatcctt
     1501 gccccgaaag aggcgcacag gttgcccgca acccttggcg ccacgcaata ttcgccgcca
     1561 tgaacgatcc cgtggaaagc ttcttcaccc agtgccaggc cgtgcttgcc ggcgatgccg
     1621 ccctgctcgc ccagctgcag gcggctggct tcgattgcca ggccggctac tgggccttcc
     1681 ggctgccgca gctgcagcag tggctggcgc cgcagctgga ctacccgcgc tttcgccagg
     1741 cgctttatgc cagcgagctg aatacgagat tgaaagagtt gggcggcgag atcgccatcg
     1801 ccgacaacca gggcaacagc gacctcagtc tgtactgcct gcgccgtctt tcctgaacag
     1861 gtggcgggtg gcttcggcat acagcgccga ctcgccgaag tccgccgcct gcagcaccca
     1921 accgaccaga atcagcgcag tacggcgaaa gcccttcgcc gccactctgg cctcgatatc
     1981 cgccagagtg ccaagcaccc agtcctgatc cggccagctg gcgcggtgca ccacggcaat
     2041 cggacaatcg gcgccgtagt gcggcagcag ctccgtgacg atgcgcggca gatgttgcac
     2101 accgaggtga atggccaggg tcgcgcaatg actggccagg gcgcccagct cctcccccgc
     2161 cggcatcggc gagttgtggc cgtagcgggt gaggatcacc gtctgcgcca cctcgggcag
     2221 ggtcagttcg gcctccagta acgccgcaca ggccgttgtg gcggtgacgc cgggaacgat
     2281 ctcgaaggga atctgcagcg cgcgcagttc gcggatctgc tcgccgatgg cgccgtagag
     2341 cgacgggtcg ccggaatgca cgcgggccac gtcctggccc ctggcatggg cctcggcgag
     2401 taacgtgacg atctgctgca aatgcagttc tgcggtgttc accacctgct cggcactgtg
     2461 gccctgcaac acggcctcgg gtaccagcga gccggcgtag aggatcaccg ggcagctgcg
     2521 gatcaggcgc tggcccttga cggtgatcag ctcgggatcg ccggggccgg cgcctatgaa
     2581 atagacggtc atgagaggtt ccgatgtcag agcctgctcg cgatcttgcg agctagagat
     2641 aaatagtggc gaaagcggct gaggaagcgg actgggctcg catacgagtt tacatacggt
     2701 aaatgagcat tccgaccggg ctggcgatcc aggccgcgtt caacgccatc taaccgacgc
     2761 gcagcagatc gcgggttggc tctcaggcgc gagcgatggc cagggtagca gcggtgctgc
     2821 gttgcttggg acagattagg gccgcgacgc gaccggaacg cgcgctggcg ccggccaggg
     2881 cactggcctc ggccacgctg gtggaaccgg tcagctcgcg cacgaacgcc gagccttcgc
     2941 tcagctgcga ctcgtgagcc gacagctgtt cggccgagaa gaaatccagc ggcagctcga
     3001 gctcggcggc cagcagcagc agcccggcct catcgcgctt gagtgcgctg ctggccaggc
     3061 catccagcgc gctcagtggc agtgcgagct gctccagggt ctgctccagt aattcgcgca
     3121 gctcggccgc cgtgcatccg cgacggcagc cgagaccggc tacgatcacc gaatcaggtg
     3181 tcctgctgtt cgccacgggc gaagaaccag gcggcggcca ggcccagggc ggaccagaac
     3241 acggcattgg tcagcagcga ggcgaggatg aactcgcgct ccagagcggc gggcgccagg
     3301 ctctcgtgca cttccggatg cggcgcgccg atcagatgcg gcacggccag cagcaccagg
     3361 ccgacgccac gcagcgccca gttgcggccg aaggcaatca ggcccaggcc ggcggcagtg
     3421 gcgacggcag tgccgatcca ccagtactgg cgcagtagca gatcggccgc agcggtgccc
     3481 ggcagttccg gcgacaggcc ggcggatggc gccaggctga acacggcgaa accgcccagc
     3541 ccccagagca ggccctgcca ggtctggttc ggtgcacgca gggtgaacag gccggccagc
     3601 atcagggcga agccgacggc caccacaagg ttgctcagtc cggtggccag ggtgcgctgc
     3661 cagccatctt ccggcgccca ggcctcgccg tcgtggctat ggccggaggc ctcctggtgt
     3721 tcgtgctcat gggcggcgac gggtgcttca tggctgtgct cggccgtcgg ctcggcggtc
     3781 tcgaaggttt ccgcatgcag aatcagcggg gtgacccaca ggctctgcag cagggtcagg
     3841 acgatggcgg ccaagaggcc ggagaagccc gcggtctggg cgatgcgctt gatcatggcg
     3901 agcagtctca gtggcagggg aaggcggcgc tgtggcgcgt atcgtgggcg gcgttgtgca
     3961 tcgcctcg
//
LOCUS       DATIHC010000578         1968 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_41524, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000578 DATIHC010000000
VERSION     DATIHC010000578.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1968
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41524"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            183..659
                     /locus_tag="VLF16_09520"
     CDS             183..659
                     /locus_tag="VLF16_09520"
                     /EC_number="1.9.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003449810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009061 - anaerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HSX71162.1"
                     /translation="MRSLPLLLVLLANLAHAADYPLDAPAPDGRRPGSTLSQERAAPP
                     LAEDENKDLKRERNYPEQPPTIPHTIRGYQVDKNGNKCLTCHSRSNSAKTQAPMISIT
                     HYMDRDGQTLAAVSPRRYFCTQCHVPQQEVKPLVGNDFRTIDQLLQDEVQRAGQQQ"
     gene            667..1266
                     /locus_tag="VLF16_09525"
     CDS             667..1266
                     /locus_tag="VLF16_09525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017516463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HSX71163.1"
                     /translation="MKALFRWLSSYWTILRRPSVHYSLGFLTLGGFIAGIIFWGGFNT
                     ALEATNTEQFCISCHEMESNVYVELQDTIHYTNRSGVRATCPDCHVPHQWTDKIARKM
                     QASKEVWGKIFGTINTRDKFLEKRRELAEHEWARLKANDSLECRNCHNFEFMDFTRQS
                     QRARQMHSTALASGQATCIDCHKGIAHRLPDMSGVKGWE"
     gene            complement(1402..>1968)
                     /locus_tag="VLF16_09530"
     CDS             complement(1402..>1968)
                     /locus_tag="VLF16_09530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71164.1"
                     /translation="RRPWRRDGPDLPIDFAREGDRGELAAVLCYSAPVARVMWALLDV
                     RCVEEARELLRRREQIPSSQRAARSVGSVEGCANRYEHSDTIARWAKAMRLDAVVWTA
                     LPPRVFGENGRAPTIEEALAHIRELPEERCRHAEFYTRSAPRFIATPMRRALEETFGW
                     WPNDNAVPNLRMRLGAPQPGSSRRRLEQ"
BASE COUNT          387 a          726 c          577 g          278 t
ORIGIN      
        1 cgcatcgaga cccgcggccg caacaagccg ccacgcggcc tggtgttcgt gccgttcttc
       61 gacgccaaca agctgatcaa caaggtcacc ctggacgcca ccgaccccat ttccaagcag
      121 accgactaca agaagtgcgc cgtgcgcatc gaactggtca gcctggcctg aggagcccga
      181 tcatgagaag cctgcccctg ctgctggtcc tcctggcgaa cctggcccac gcagccgact
      241 accccctcga cgcccccgca ccggacggtc gccgccccgg cagcaccctc agtcaggagc
      301 gagccgcgcc gcccctggcc gaggacgaga acaaggacct caagcgcgag cgcaactacc
      361 ccgaacagcc gccgaccatt ccccatacga tccgcggcta ccaggtagac aagaacggca
      421 acaagtgcct gacctgccac agccgcagca acagcgcgaa gacccaggcg ccgatgatca
      481 gcatcaccca ctacatggac cgcgacggcc agaccctggc cgcggtgtcg ccgcgacgct
      541 acttctgcac ccagtgccat gtgccgcagc aggaagtgaa gccgctggtg ggcaacgact
      601 tccgcaccat cgaccagctg ctgcaggacg aagtgcagcg cgccggccag cagcagtgag
      661 gtgcccatga aagccctgtt ccgatggctg agttcctact ggaccatcct gcgtcgcccc
      721 agcgtgcact acagcctggg cttcctcacg ctcggaggct tcatcgccgg gatcatcttc
      781 tggggcggct tcaacaccgc gctggaggcg accaacaccg agcagttctg catctcctgt
      841 cacgagatgg agagcaacgt gtacgtcgag ctgcaggaca ccatccacta caccaaccgc
      901 tcgggcgtgc gcgccacctg ccccgactgc cacgtgccgc accagtggac cgacaagatc
      961 gcgcgcaaga tgcaggcctc caaggaggtc tggggcaaga tcttcggcac catcaacacc
     1021 cgcgacaaat tcctcgagaa gcgccgcgaa ctggccgaac acgaatgggc ccgcctcaag
     1081 gccaacgact cgctggaatg ccgcaactgc cacaacttcg agttcatgga cttcacccgc
     1141 cagagccagc gcgcacgcca gatgcactcc accgccctcg cctccggcca ggccacctgc
     1201 atcgactgcc acaagggcat cgcccaccgc ctgccggata tgagcggggt gaaggggtgg
     1261 gaatgacgtg gtctacggat cgatggccaa gaaaacgaaa gccccgagat cggggctttt
     1321 ttctgccatt cgcaaggcga tttgatcgag caatgccgcg tcgcgtcgta ctcagcggcg
     1381 caggcccttg ttgaccgggt atcactgctc cagtcgccgc cgactcgagc ccggctgcgg
     1441 agcgcccagc cgcatgcgga ggttaggcac cgcgttgtcg tttggccacc agccgaaggt
     1501 ctcctccagc gcccttcgca tcggcgttgc gataaaccgc ggagcggaac gggtgtagaa
     1561 ctcggcgtgg cggcagcgct cttccggcaa ctcgcggata tgggccaggg cctcctcgat
     1621 ggtcggcgcc ctgccgttct caccgaagac gcgcggaggc agcgccgtcc acaccacggc
     1681 atcgaggcgc atcgccttcg cccagcgtgc gatggtgtcg gaatgctcgt agcgattggc
     1741 gcagccctcg acactgccga cgctgcgcgc tgcgcgctgc gacgagggaa tctgctcgcg
     1801 cctgcgcaac agctcgcgcg cttcctcgac acagcgcaca tcgagcagcg cccacatcac
     1861 cctcgccacc ggcgccgagt agcacagcac cgccgccaac tccccgcggt cgccctcacg
     1921 cgcgaaatcg ataggcagat ccggcccatc ccgccgccac ggccggcg
//
LOCUS       DATIHC010000579         6308 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_38112, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000579 DATIHC010000000
VERSION     DATIHC010000579.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6308)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6308
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38112"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..123
                     /locus_tag="VLF16_09535"
     CDS             <1..123
                     /locus_tag="VLF16_09535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019828395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNase H family protein"
                     /protein_id="HSX71165.1"
                     /translation="VNRHQVTWQWVRGHTGHPGNEKADQLANRGVDEVRAMKHA"
     gene            116..859
                     /gene="dnaQ"
                     /locus_tag="VLF16_09540"
     CDS             116..859
                     /gene="dnaQ"
                     /locus_tag="VLF16_09540"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004422527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HSX71166.1"
                     /translation="MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLN
                     PDREIDEGAIAVHGITNEFVADKPRFKDVADEFFEFITGAQLIIHNAAFDVGFINNEF
                     ALLGQSERSDVADYCSILDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDA
                     EILADVYLTMTGGQTHLSLAGEGGDGSGRVLPSPIRRLDPNRAPIRVLRASEEELAAH
                     AARLAVIEKAAGGPSLWVKMDAPAEEPVA"
     gene            980..3235
                     /locus_tag="VLF16_09545"
     CDS             980..3235
                     /locus_tag="VLF16_09545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Orn/Lys/Arg decarboxylase N-terminal
                     domain-containing protein"
                     /protein_id="HSX71167.1"
                     /translation="MYKDLNFPILIVHRDIKADTVAGERVRAIAEELSKDGFTILSTA
                     SSTEGRIVASTHHGLACILVAAEGAGENQRLLQDMVELIRIARLRAPQLPIFALGEQV
                     TIENAPAEAMADLNHLRGILYLYEDTVSFLARQVARAAHNYLDGLLPPFFKALVQHTA
                     QSNYSWHTPGHGGGVAYRKSPVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPLAE
                     AEARAARNFGADHTFFVINGTSTANKIVWHSMVGRDDLVLVDRNCHKSILHSIIMTGA
                     IPLYLMPERNELGIIGPIPVSEFSRESIQAKIDASPLARDRQARGGAPRVKLAVVTNS
                     TYDGLCYNAEMVKQALGESVEVLHFDEAWYAYAAFHEFYAGRYGMGTRCEAHSPLVFT
                     THSTHKLLAAFSQASMIHVQDGGVRQLDRDRFNEAFMMHISTSPQYGIIASLDVASAM
                     MEGPAGRSLIQETFDEALSFRRALANLRQNLAVDDWWFSIWQPEQAGGEDVQTGDWLL
                     EPNADWHGFGEVAQDYVLLDPIKVTLVMPGLSADGKLAEAGIPAAVVSKFLWERGLVV
                     EKTGLYSFLVLFSMGITKGKWSTLLTELLEFKRLYDANVPLLEALPSIAREGGARYAG
                     MGLRDLCDELHACYRENATAKALKRMYTVLPPLAIKPADAYDQLVRGGVEAVPIEQLE
                     GRIAAVMLVPYPPGIPLIMPGERFTAETRSIIDYLQFARTFDSRFPGFDADVHGLQRE
                     GACYTVDCIKE"
     gene            3290..4666
                     /locus_tag="VLF16_09550"
     CDS             3290..4666
                     /locus_tag="VLF16_09550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017519537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HSX71168.1"
                     /translation="MAEGKSARGEMGFWTCTALVVGNMVGSGVFLLPSALAPYGGLSL
                     VGWLVSTTGAVLLALTFSRLARFNPAAGGPYAYTRDAFGGFAGYLCAWTYWKAAWIGN
                     AAIAVTLVGYLQVFLPVLRDPLMTVAAAIGAIWLCTLINLRGITAFGYVQNVLTLLKL
                     IPLLLVGVLGWFYFNPEHLSIPAPAQLPGGGYAQAIATTAALTLWSFIGLESATVPAE
                     HVREPRRTIPRATLVGTLVAATVYILSITAVQGILPPEILAKSTAPFADAARVMLGDW
                     GYYFIAGGAVIACLGALNGWVLLQGQIPMATARDGLLPEALARTNKHGVPANGLLISG
                     VLVTLLVLVDGQGDLVEVFNVIILLGTMAGVVPYVFCAAALLHLLAMRPADFGRHESG
                     RLLWVGCCAFLYSMWALYGTGEQAIFWGFLVLMVGIPLYTWRQWRNRVEAEAVTASGS
                     PPTSQDHP"
     gene            complement(4623..6119)
                     /gene="nhaB"
                     /locus_tag="VLF16_09555"
     CDS             complement(4623..6119)
                     /gene="nhaB"
                     /locus_tag="VLF16_09555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019579219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proton antiporter NhaB"
                     /protein_id="HSX71169.1"
                     /translation="MPRSFAAALAHNFLGNSPHWYKLAIVVFLIANPVVLWNLGSAVA
                     GWLLVGEFIFTLAMALKCYPLQPGGLLVLQAILLGLATPQALYDELKHNFPVILLLMF
                     MVAGIYFMKDLLLFLFSRILLGVRSKTLLSLLFCLLSAFLSAFLDALTVTAVIISAAL
                     GFYSVYHRVASGRGPHEEEALHAEPIELHREDLEQFRAFLRSLLMHGAVGTALGGVCT
                     LVGEPQNLLIGHEMGWHFGEFFLRTAPVSMPVLAAGLTTCALLERLGWFGYGPPLPAA
                     VRQVLAEQARASDAQRTSLQRAALLVQGLAALLLILCLALHVAEVGLIGLMVIVLITA
                     FSGITDEHRIGRAFQEALPFTALLVTFFAVVAVIHEQQLFTPVIQWVLALPTEQQPGM
                     LFIANGLLSAISDNVFVATIYITEVKQAFTQGQMSREHFEALAVAINTGTNLPSVATP
                     NGQAAFLFLLTSAVAPLVRLSYGRMVWMALPYTFVMGGLGWWAVSHWL"
BASE COUNT         1070 a         2105 c         2101 g         1032 t
ORIGIN      
        1 gtcaaccgcc accaggtgac ctggcagtgg gtgcgcgggc ataccggcca cccgggcaac
       61 gagaaggcgg accaactggc caaccgcggc gtagatgaag tgagggcaat gaagcatgcg
      121 tagcgtcgta ctcgacaccg aaaccaccgg catgccggtc accgatggcc accgcatcat
      181 cgagatcggc tgtgtcgagc tggaggggcg gcgcctgacc ggccgccact tccacgtcta
      241 cctcaacccg gatcgcgaga tcgacgaggg cgcgatcgcg gtccacggca tcaccaacga
      301 gtttgtcgcc gacaagccgc gcttcaagga cgtggccgac gaattcttcg agttcatcac
      361 cggcgcccag ctgatcatcc acaacgcggc gttcgacgtc ggcttcatca acaacgaatt
      421 cgccctgctg ggccagagcg agcgtagcga cgtcgccgac tactgctcga tcctcgacac
      481 cctgctgatg gcccgcgagc gccacccggg ccagcgcaac aacctcgacg cgctgtgcaa
      541 gcgctatggc gtcgacaact ccggccgtga cctgcacggc gcactgctcg acgccgagat
      601 ccttgccgac gtctacctga ccatgaccgg cggccagacc cacctgtcgc tggccggcga
      661 gggcggcgac ggctcgggac gtgtgctgcc gagcccgatc cgccggctcg accccaatcg
      721 cgcgccgatt cgcgtgctgc gtgccagcga agaggaactg gccgcccacg ccgcgcgtct
      781 ggcggtgatc gagaaggccg ccggcggtcc ttcgctgtgg gtcaagatgg acgcgccggc
      841 cgaggagccg gtggcctgac gaaaacggtc aatgcgacct tttcttacag cgttccgcat
      901 cgggggttcc gccgccatcg gcgaacttct accctgaggc gatcgggcac ctcgacgtgc
      961 ctcgcctcag gaacctccaa tgtataaaga cctgaatttc cccatcctca tcgttcaccg
     1021 cgacatcaag gccgacacgg tcgccggcga gcgcgtccgc gccatcgccg aggagctgag
     1081 caaggacggc ttcaccatcc tttccaccgc cagctccacc gagggccgca tcgtcgcatc
     1141 gacgcaccac ggcctggcct gcatcctggt ggcggccgaa ggggcagggg agaatcagcg
     1201 cctgctgcag gacatggtcg agctgatccg catcgcccgc ctgcgtgcgc cgcagctgcc
     1261 aatcttcgct ttgggcgaac aggtcaccat cgagaacgcg ccggccgagg ccatggccga
     1321 tctcaaccat ctgcgcggca ttctttatct gtacgaggac accgtgtcct tcctcgcccg
     1381 ccaggtggcg cgcgccgcgc acaactacct ggacggcctg ctgccgccgt tcttcaaggc
     1441 gctggtgcag cacaccgcgc agtccaacta ctcctggcac acgcccggtc acggcggcgg
     1501 cgtggcctat cgcaagagcc cggtggggca ggccttccac cagttcttcg gcgagaacac
     1561 gctgcgttcc gacctctcgg tatcggtgcc ggagctgggc tcgctgctcg atcacaccgg
     1621 cccgctggcc gaggccgagg cgcgcgcggc gcgcaacttc ggcgccgacc acaccttctt
     1681 cgtgatcaac ggcacctcga cggcgaacaa gatcgtctgg cattcgatgg tcggccgcga
     1741 cgacctggtg ctggtggacc gcaactgcca caagtcgatc ctgcattcga tcatcatgac
     1801 tggcgccatc ccgctgtacc tgatgcccga gcgcaacgag ctgggcatca tcgggccgat
     1861 cccggtttcc gaattcagcc gggagtcgat ccaggccaag atcgatgcca gcccgctggc
     1921 gcgtgatcgc caggcccggg gcggtgcgcc cagggtcaag ctggcggtgg tgaccaactc
     1981 cacctacgac ggcctctgct acaacgccga gatggtcaag caggccctgg gcgagtcggt
     2041 ggaggtgctg cacttcgacg aggcctggta cgcctacgcc gcgttccacg agttctacgc
     2101 cggtcgctac ggcatgggca cccgctgcga ggcgcattcg ccgctggtgt tcaccaccca
     2161 ctccacgcac aagctgctgg cggccttcag ccaggcctcg atgatccacg tgcaggacgg
     2221 cggcgtgcgc cagctggacc gcgaccgttt caacgaagcc ttcatgatgc acatctccac
     2281 ctcgccgcag tacggcatca tcgcctcgct ggacgtggct tcggcaatga tggaaggccc
     2341 cgccggacgc tcgctgatcc aggagacctt cgacgaggcg ctgagcttcc gccgcgccct
     2401 ggccaacctg cgccagaacc tggcggtgga cgactggtgg ttcagcatct ggcagccgga
     2461 gcaggccggt ggcgaggacg tgcagaccgg cgactggctg ctcgagccca acgccgactg
     2521 gcacggcttc ggcgaggtgg cccaggacta cgtgctgctc gacccgatca aggtcaccct
     2581 ggtgatgccg gggctgtccg ccgatggcaa gctggccgag gccggcatcc ccgcggcggt
     2641 ggtcagcaag ttcctctggg agcgcggcct ggtggtggag aagaccggcc tgtattcctt
     2701 cctggtgctg ttctccatgg gcatcaccaa gggcaagtgg agcacgctgc tcaccgagct
     2761 gctggagttc aagcgcctgt acgacgccaa tgtgccgctg ctcgaggcgc tgccttcgat
     2821 cgcccgcgag ggcggggcgc gctacgccgg catgggcctg cgcgacctgt gcgacgagct
     2881 gcacgcctgc taccgcgaga acgccacggc caaggcgctg aagcgcatgt acacggtgct
     2941 gccgccactg gcgatcaagc cggccgacgc ctacgaccag ctggtgcgcg gcggggttga
     3001 ggcggtgccg atcgagcaac tggaagggcg catcgccgcg gtgatgctgg tgccctatcc
     3061 gccgggcatt ccgctgatca tgccgggcga gcgcttcacc gctgagaccc gctcgatcat
     3121 cgattacctg cagttcgcgc gcaccttcga cagtcgcttc cccggcttcg acgccgatgt
     3181 gcatggcctg cagcgcgaag gcgcgtgcta taccgtggat tgcatcaagg aataacgcac
     3241 ggcctgacga ctcgtttcgc gcaggccggc cacgtcagcg gggggagtca tggctgaagg
     3301 caagagcgcg cgcggggaaa tggggttctg gacctgtacc gcgctggtgg tcggcaacat
     3361 ggtcggttcg ggggtgttcc tgctgccctc ggcgctggcg ccgtacggcg ggttgagcct
     3421 ggtcggctgg ctggtctcca ccaccggtgc ggtgctgctg gcactgacct tctcgcgcct
     3481 ggctcgcttc aatccggccg ccggcgggcc ctacgcctat acccgcgatg ccttcggcgg
     3541 tttcgccggt tacctgtgtg cctggaccta ctggaaggcc gcctggatcg gcaacgccgc
     3601 catcgccgtg acgctggtgg gttacttgca ggtgttcttg ccggtcctgc gcgatccgct
     3661 catgaccgtg gcggcggcga tcggcgcgat ctggctgtgc acgctgatca acctgcgcgg
     3721 catcaccgcc ttcggttacg tgcagaacgt gctgaccttg ctcaagctga tcccgctgct
     3781 gctggtcggg gtgctcggct ggttctactt caatcccgaa cacctgagca ttcccgcgcc
     3841 ggcgcagctg ccaggcggcg gctatgccca ggccatcgcc accacggcgg cgctgacgct
     3901 gtggtcattc atcggcctgg agtcggcgac cgtgccggcc gagcatgtgc gcgaaccccg
     3961 ccggactatc ccgcgggcga cgctggtcgg tacgctggtg gcggcgacgg tctacatcct
     4021 ctccatcacc gccgtgcagg gcatcctgcc gcccgagata ctggccaagt ccaccgcacc
     4081 gttcgccgat gcggcgcggg tcatgctcgg cgactggggc tactacttca tcgccggcgg
     4141 cgcggtcatc gcctgcctcg gcgcgctcaa cggctgggtg ctgctgcaag gccagattcc
     4201 catggcgacc gcccgcgacg gtctgctgcc ggaggccctg gcgcgcacca acaagcacgg
     4261 cgtgccggcc aatggactgc tgatctccgg cgtgctggtg acgctgctgg tgctggtgga
     4321 cgggcagggc gatctggtcg aagtgttcaa cgtgatcatc ctgctcggca ccatggccgg
     4381 cgtggtgccc tacgtgttct gcgccgcggc cctgctgcac ctgctggcga tgcgcccggc
     4441 cgatttcggt cgccatgaaa gcggccggct gctgtgggtg ggctgctgcg ccttcctcta
     4501 ttccatgtgg gcgctgtacg gcacgggcga gcaggcgatc ttctggggct ttctcgtgct
     4561 gatggtcggc atcccgctct acacctggcg ccagtggcgc aaccgggtag aggcggaggc
     4621 cgtcacagcc agtggctcac cgcccaccag ccaagaccac ccatgacgaa ggtgtagggc
     4681 agggccatcc acaccatgcg cccgtaggac agccgcacca gcggggcgac ggccgaggtg
     4741 agcaggaaca ggaaggccgc ctgaccgttg ggcgtggcca cgctcggcag gttggtgccg
     4801 gtgttgatgg ctaccgccag cgcctcgaag tgttcgcgac tcatctggcc ctgggtgaac
     4861 gcctgcttga cctcggtgat gtagatggtg gcgacgaaca cgttgtcgct gatggccgag
     4921 agcagcccgt tggcgatgaa cagcatgcct ggctgctgct cggtgggcag agcgagcacc
     4981 cactggatga ccggggtgaa cagctgttgt tcgtggatca ccgcgaccac ggcgaagaag
     5041 gttaccagta gcgcggtgaa gggcagggcc tcctggaacg cgcggccgat gcggtgctcg
     5101 tcggtgatgc cggaaaacgc ggtgatcagc acgatcacca tcaggccgat tagcccgacc
     5161 tccgccacat gcagagccag gcaaaggatc agcagcagcg ccgccagacc ctggaccagc
     5221 agcgcggctc gttgcaggga ggtgcgctgg gcatcgctgg cgcgtgcctg ctcggccagc
     5281 acctggcgta cggcggcggg cagcgggggg ccgtaaccga accagcccag gcgctcgagc
     5341 agggcgcagg tcgtcaggcc ggcggccagc accggcatgg agacgggcgc cgtccgcagg
     5401 aagaactcgc cgaagtgcca gcccatctcg tggccgatca gcaggttctg cggctcgccc
     5461 accagggtgc acacgccgcc cagcgcggtg cccaccgcgc cgtgcatcag caggctgcgc
     5521 aggaaggcgc ggaactgctc caggtcctcg cgatgcagct cgatgggctc ggcgtgcagc
     5581 gcctcctctt catgcgggcc gcggccggag gcgacccggt ggtagaccga gtagaagccc
     5641 agcgccgcgc tgatgatcac ggcggtgacc gtcagcgcgt cgagaaaggc cgagagaaag
     5701 gcggagagca ggcagaacaa cagggacagc agcgtcttcg aacgcacccc gagcaggatg
     5761 cgcgagaaca ggaacagcag caggtccttc atgaaataga tgcccgccac catgaacatc
     5821 agcagcagga tcaccgggaa attgtgcttg agctcgtcgt acagcgcctg cggcgtggcg
     5881 aggccgagca gtatcgcctg cagcaccagc aggccgccgg gttgcagcgg atagcacttg
     5941 agcgccatgg ccaaggtgaa gatgaattcg cccaccagca gccagccggc gaccgccgaa
     6001 ccgaggttcc acagcaccac gggattggcg atgaggaaga cgacgatcgc cagcttgtac
     6061 caatgcggcg aattgccgag gaagttatgg gcaagggcgg cggcgaagga gcgcggcatg
     6121 ggtctggtcc cctgaatcgg agagcgaaga ttccggggca gtttcaaaaa gatcaagcgt
     6181 ttaacgtata tagtcaaaaa tcttctcagc tttgctagcg tgccgtgcgt cacagtggcc
     6241 ggcatcgact tttggatcgt gcttgttata gtgctgcgat tgattccaag acccactatc
     6301 cgtctcgc
//
LOCUS       DATIHC010000580         1615 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36663, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000580 DATIHC010000000
VERSION     DATIHC010000580.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36663"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..207
                     /locus_tag="VLF16_09560"
     CDS             <1..207
                     /locus_tag="VLF16_09560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008002539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HSX71170.1"
                     /translation="ERPLLVVVAKAGRQTSKAELIAFLAERVARWWLPDDVVFVDQLP
                     HTATGKLQKMKLREQFRDHVLGGE"
     gene            293..>1615
                     /locus_tag="VLF16_09565"
     CDS             293..>1615
                     /locus_tag="VLF16_09565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015095092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR family transcriptional regulator"
                     /protein_id="HSX71171.1"
                     /translation="MERIEPELVLKTTPPRSQKAAYRRERLSLETDELASRMAISVHA
                     PAGFGKTWLLAQWRRELLSRGAVVAWLTLDGRDDAVRFVQGLAAAMLVASGRQAFANS
                     ANQAMSRRDALGDLTEWLAEVADLGGEVALMLDEVDVLPDATVRLALTYLLHNAPANL
                     RVLMASRRRLHLQAAELQARGAFLGLGLEALRFRVEETVAVLASRFGDGLDIDLRVEL
                     HELTEGWPLGLQLAVAAMERSAGPARAVQELKACTGDIQRYFVDSLVEKLPPEQVDFL
                     TCIALPENLHPELCVALSADPRAGERMAELCASTPIFAEGLGSDWVRIHPLAREFLQQ
                     RVALLSQARRNELHRRAATWLEARGFFEEAARHYLSADLSAQAYGMIEQCLYEIMLRG
                     QFNRVIEWVGELPAEEVESRPRMCLAAAWALAMSDRAGQARHLILKLQS"
BASE COUNT          237 a          536 c          587 g          255 t
ORIGIN      
        1 gagcgcccgt tgctggtggt ggtggcgaaa gccggcagac agacgagcaa ggccgagctg
       61 atcgccttcc tcgccgagcg cgtggcccgc tggtggctgc cggacgacgt ggtgttcgtc
      121 gaccaattgc cacacaccgc gacgggcaag ctgcagaaga tgaagctgcg tgaacagttt
      181 cgcgaccatg tcctcggtgg cgaatgaccg gcggacggtg gactggcgaa gcggcggaat
      241 ctgcgccgat actggtgggc aacgtagttc gtccccgtgc gaggcctcgt aagtggaaag
      301 aatcgagccc gagctggtcc tcaagaccac gccgccgcga agccagaagg ccgcttatcg
      361 ccgcgagcgc ctgagcctgg agacggacga gctggcctcg cgcatggcga tctccgtgca
      421 tgcgccggcc ggtttcggca agacctggct gctggcgcag tggcggcgcg agctgctgtc
      481 ccgcggcgcg gtggtcgcct ggctgaccct cgacggccgc gacgatgccg tgcgcttcgt
      541 tcagggcctg gcggcggcca tgctggtggc cagcggtcgc caggcattcg ccaactcggc
      601 caaccaggcg atgagccggc gcgatgccct gggcgatctg accgagtggc tggccgaggt
      661 ggccgacctc ggcggcgagg tggcgctgat gctcgacgag gtcgacgtgc tgccggacgc
      721 taccgttcgc ctcgccctga cctatctgct gcacaacgcg ccggccaacc tgcgtgtact
      781 gatggcctcg cgccgtcgcc ttcacctgca ggccgccgaa ctgcaggcgc gcggcgcgtt
      841 tctcgggctc ggcctcgagg ccctgcgctt tcgcgtcgag gagacggtcg cggtgctcgc
      901 cagccgcttc ggcgatggcc tcgacatcga cctgcgggtg gagctgcacg aactcaccga
      961 gggctggccg ctgggcctgc aactggcggt ggcggcaatg gagcgcagcg ccgggccggc
     1021 gcgcgccgtc caggagctca aggcctgtac cggcgacatc cagcgctact tcgtcgacag
     1081 tctggtggag aaactgccgc cggagcaggt cgacttcctc acctgcatcg cgctgccgga
     1141 gaacctgcac ccggagctgt gcgtggcgct gagcgccgac ccgcgtgccg gcgagcgcat
     1201 ggccgagctg tgcgccagca cgccgatctt cgccgagggc ctgggcagcg actgggtgcg
     1261 cattcatccg ttggcgcgtg aattcctcca gcagcgcgtg gcgctgctgt cgcaggcgcg
     1321 gcgcaacgag ctgcaccgcc gggctgccac ctggctggag gcgcgcggtt tcttcgagga
     1381 ggccgcgcgg cattacctga gcgccgacct gtcggcgcag gcctacggca tgatcgagca
     1441 atgcctgtac gagatcatgc tgcgcggcca gttcaaccgg gtcatcgaat gggttggcga
     1501 gctgcccgcc gaggaagtgg agtcgcgtcc gcgcatgtgt ctggcggcgg cctgggccct
     1561 ggccatgagc gaccgtgccg ggcaggccag gcacctgatt ctcaagctgc aatcc
//
LOCUS       DATIHC010000581         1640 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17140, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000581 DATIHC010000000
VERSION     DATIHC010000581.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1640
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17140"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            119..190
                     /gene="pqqA"
                     /locus_tag="VLF16_09570"
     CDS             119..190
                     /gene="pqqA"
                     /locus_tag="VLF16_09570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0018189 - pyrroloquinoline quinone
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline quinone precursor peptide PqqA"
                     /protein_id="HSX71172.1"
                     /translation="MWTKPSYTDLRIGFEVTLYFANR"
     gene            235..1146
                     /gene="pqqB"
                     /locus_tag="VLF16_09575"
     CDS             235..1146
                     /gene="pqqB"
                     /locus_tag="VLF16_09575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012702669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0018189 - pyrroloquinoline quinone
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline quinone biosynthesis protein
                     PqqB"
                     /protein_id="HSX71173.1"
                     /translation="MLIQILGSAAGGGFPQWNCNCRNCRGLREGTLNARPRTQSSIAL
                     SDDGVNWILCNASPDIRAQLEAFPPLQPARAVRDTGIAAVVLLDSQIDHTTGLLSLRE
                     GCPHEVWCTEMVHQDLTSGFPLFDMLSHWPGGGLHWQPIDLARSFTIAACPQLEFTPF
                     PLHSAAPPYSPHRNDPHPGDNIGLRVRDRRTGGTLFYAPGLGQVDAELRAQMAEADCL
                     LVDGTFWRDDEMIRAEVGSKRGSQLGHLQQSGPHGMVAALQGLAARKVLIHINNTNPI
                     LDEDSAERAELTAHGIEVAFDGMSIEL"
     gene            1246..>1640
                     /locus_tag="VLF16_09580"
     CDS             1246..>1640
                     /locus_tag="VLF16_09580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250677.1"
                     /note="Required in the synthesis of PPQ, but its exact
                     function is unknown; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline quinone biosynthesis protein C"
                     /protein_id="HSX71174.1"
                     /translation="MSQPAMSPGEFEQALRAKGACYHIYHPYHVAMYEGRASREQIQG
                     WVANRFYYQLNIPLKDAAILANCPDRDTRREWVQRILDHDGAMGEEGGIEAWLRLAEA
                     VGLDREQVLSQELVLPGVRFAVDAYVNFAR"
BASE COUNT          279 a          594 c          530 g          237 t
ORIGIN      
        1 gcgccggccc taccaaatca ggggcgaaac tccttcgaaa gtatcattcg ggggaaacgt
       61 cgctggtggt taactcgacc tgccggaatc ttccggctta caagaagagg atcgatccat
      121 gtggaccaag cctagctata ccgacctgcg cattggtttc gaagtgaccc tgtacttcgc
      181 caatcgttga tgcgatctgc cccggtccgc cggggcttcc aaccggagcg ccgtatgctc
      241 atccagattc tcgggtcggc cgccggcggc ggctttcccc agtggaactg caactgccgc
      301 aactgccgcg gcctgcgcga aggcacgctg aacgcgcgcc cgcgcaccca gtcgtccatc
      361 gccctgtccg acgacggggt caactggatc ctgtgcaacg cctcgccgga catccgcgcc
      421 cagctcgagg ccttcccgcc gctgcagccg gcgcgggcgg tgcgcgacac cggcatcgcc
      481 gccgtcgtcc tgctcgacag ccagatcgac cacaccaccg ggctgctcag cctgcgcgag
      541 ggctgcccgc acgaggtgtg gtgcacggag atggtccacc aggacctgac cagcggcttc
      601 ccgctgtttg acatgctctc gcactggccg ggtggcggcc tgcactggca gcccatcgac
      661 ctggcgcgca gcttcaccat cgccgcctgc ccgcagctgg agttcacccc gttcccgcta
      721 cacagcgccg cgccacccta ttcgccgcac cgcaacgacc cgcaccccgg cgacaacatc
      781 ggcctgcggg tgcgcgaccg gcgaaccggc ggcacgctgt tctatgcccc cggcctgggc
      841 caggtggacg ccgagttgcg cgcgcagatg gccgaggccg actgcctgct ggtggacggc
      901 accttctggc gcgacgacga gatgatccgc gccgaggtcg gcagcaagcg cggcagccag
      961 ctgggccatc tgcagcagag cgggccgcac ggcatggtcg ccgcgctgca agggctggcc
     1021 gcgcgcaagg tgctgatcca catcaacaac accaacccga tcctcgacga ggactcggcc
     1081 gagcgcgccg aactgacggc gcacggcatc gaggtcgcct tcgacggcat gagcatcgaa
     1141 ctctgaggaa tccggcatga gccagctcgc cgggtgcgcc gcgcgcaccc cgaaccccgt
     1201 aagagccaag ggtgcgcacg gcgcccccta cgcaaaggtg cagagatgag tcagcctgcc
     1261 atgagccccg gtgaattcga gcaggcgctg cgcgccaagg gcgcctgcta ccacatctat
     1321 cacccgtacc acgtggccat gtacgagggc cgcgccagcc gcgagcagat ccagggctgg
     1381 gtggccaacc gcttctacta ccagctgaac atcccgctga aggacgcggc gatcctggcc
     1441 aactgcccgg accgcgacac ccgccgcgag tgggtgcagc gcatcctcga ccacgacggc
     1501 gcaatgggcg aggagggcgg catcgaggcc tggctgcgcc tggccgaggc ggtgggcctg
     1561 gaccgcgagc aggtgctgtc gcaggagctg gtattgcccg gcgtgcgctt cgccgtggat
     1621 gcctacgtca acttcgcccg
//
LOCUS       DATIHC010000582         5006 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_26515, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000582 DATIHC010000000
VERSION     DATIHC010000582.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5006
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26515"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..311)
                     /locus_tag="VLF16_09585"
     CDS             complement(<1..311)
                     /locus_tag="VLF16_09585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014852715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NIPSNAP family protein"
                     /protein_id="HSX71175.1"
                     /translation="MPITCFIRYQIDPFQREAFREYAENWGRIIPRCGGHLLGYFLPH
                     EGSNDIAWGLIAFPSLAAYEAYRARLKSDAEGRANFAMAQDKRFILREERSFLEVVEG
                     TL"
     gene            384..1064
                     /locus_tag="VLF16_09590"
     CDS             384..1064
                     /locus_tag="VLF16_09590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014852714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSX71176.1"
                     /translation="MKDGPNIARIAALIGDHARAEVLTALMADRALTATELAEIAGVS
                     KQTMSAHLAKLLDAGLIAAVAQGRHRYFRLADADVARLLEALMGVAFRAGAVRVRSSP
                     REPALRKARVCYDHLAGELGVKAYETLLQRGCIEEQGEELRLTEAGRRWFAELQIDVE
                     AAAGRRRHLCRPCLDWSERRHHLGGALGAHLLQRLLQLGWAKRDPASRVVAFSARGER
                     ELERLLQG"
     gene            complement(1135..1590)
                     /gene="moaE"
                     /locus_tag="VLF16_09595"
     CDS             complement(1135..1590)
                     /gene="moaE"
                     /locus_tag="VLF16_09595"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003188749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase catalytic subunit MoaE"
                     /protein_id="HSX71177.1"
                     /translation="MSIRIQVEAFDPGVELNALHAANLGIGAVATFVGYVRDYNDGRD
                     VHGMFLEHYPGMTEKALAGIVGEAEQRWPLLRVEVLHRVGRLQPGEPIVFVGTASAHR
                     QAAFDACNFIMDYLKTRAPFWKKEETPDGARWVEGRCSDQQAAQRWSKP"
     gene            complement(1596..1671)
                     /locus_tag="VLF16_09600"
     ncRNA           complement(1596..1671)
                     /ncRNA_class="other"
                     /locus_tag="VLF16_09600"
                     /product="sX9 sRNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02228"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02228"
     gene            complement(1733..1978)
                     /locus_tag="VLF16_09605"
     CDS             complement(1733..1978)
                     /locus_tag="VLF16_09605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013982031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HSX71178.1"
                     /translation="MIRVQYFARYREVLGIDGEQLQRAALGNLEQLREHLLSRGGVWQ
                     VLAEQNLMCARNQELCGLETEIADGDEIAFFPTVTGG"
     gene            complement(1975..2466)
                     /gene="moaC"
                     /locus_tag="VLF16_09610"
     CDS             complement(1975..2466)
                     /gene="moaC"
                     /locus_tag="VLF16_09610"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012312827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HSX71179.1"
                     /translation="MLTHLDSQGRANMVDVTEKAVTSREALAEARVRMLPATLAMIAD
                     GSHPKGDVFAVARIAGIQAAKKTHELIPLCHPLLLTSVKVELQVEGIDCVRIQARCKL
                     AGQTGVEMEALTAASVAALTLYDMCKAVDRGIVIEAVRLLEKSGGKSGDYRLDYHEAG
                     SLT"
     gene            complement(2567..3958)
                     /locus_tag="VLF16_09615"
     CDS             complement(2567..3958)
                     /locus_tag="VLF16_09615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HSX71180.1"
                     /translation="MDDHGRTRFTQPTLYVLDTNVLIHDPNALLNFQEHHVAIPMTVL
                     EELDKLKTGKHTVAAECRQAIRLIDQVLGDAIPEDVEKGVPIQRGKSGPKGTLSILMS
                     KRAEPITWLPENLNDNKIINQLVDLRSSNPGMRVVLVTKDINMRLKARACGISAEDYH
                     TDQLVDDVNLLSRGYHNLAGSFWDRVSKVETRQGHGRTWHQVQLTDNLPAVHINEFIV
                     DEQGFVGWVKGIEGSSLTILDLHQEPLLHQEAWGLRPRDIYQALALYALLDPDIHLVN
                     LSGAAGSGKTILALAAAIEQTMVSKRYRRIIATRSVQGLDEDIGFLPGTEAEKMEPWL
                     GAITDNLEALHSDDESTHGSVDYILQKVPLQFKSLNYIRGRSFQQSLILIDECQNLTP
                     HQMKTIITRAGNGSKVICLGNLAQIDTPYLSATSSGLTYLTERFKDFPHGVHVTLQGV
                     PRSVLAEYAEAHM"
     gene            4430..4957
                     /locus_tag="VLF16_09620"
     CDS             4430..4957
                     /locus_tag="VLF16_09620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017940043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b/b6 domain-containing protein"
                     /protein_id="HSX71181.1"
                     /translation="MTPTRYTPAQITLHWLSALLVLLIIALPYGSDLFEPLLGGGAGV
                     FTLHKSLGLLVMLLTLLRLAVRTRSGAPELLASEPPLQRFAAKGGHALLYLLLLLMPL
                     TGLLFGKRPVNLFWLVEIGPLPLSDAIRGAAKTFHVTAQYLLFALILGHAGMALWHHH
                     VRRDNVLRSMLPARD"
BASE COUNT          795 a         1639 c         1654 g          918 t
ORIGIN      
        1 agggtgccct ccaccacttc gaggaagctg cgctcctcac gcaggatgaa gcgtttgtcc
       61 tgggccatgg cgaaattggc gcggccctcg gcatcgctct tcagccgggc gcgataggcc
      121 tcgtaggcgg ccaggctggg aaaggcgatc agtccccagg cgatgtcgtt gctgccctcg
      181 tgcggcagga aatagccgag caggtggccg ccgcagcgag gaatgatgcg cccccagttc
      241 tccgcgtact cgcggaaggc ttcgcgctgg aacggatcga tctggtagcg gatgaaacag
      301 gtgatgggca tggcgcgtcc tcgtggattg atgtgccacg ctaacgcttt gtcgccatcc
      361 aatggttcga ctaggatcga accatgaaag acggacccaa catcgcccgc atcgccgcgc
      421 tgatcggcga ccacgcccgc gccgaggtgc tcaccgcgct gatggccgac cgcgcgctga
      481 ccgccaccga actggcggag atcgccgggg tgagcaaaca aaccatgagc gcacacttgg
      541 ccaagctgct cgacgccggc ctgatcgccg ccgtggccca gggtcgccac cgctacttcc
      601 gcctggccga cgccgatgtc gcccgcctgc tcgaagcgct gatgggcgta gccttccgcg
      661 ccggcgccgt gcgcgtgcgt tccagcccgc gcgagccggc gctgcgcaag gcgcgggtgt
      721 gctacgacca cctggccggg gaactgggcg tgaaggctta cgagaccctg ctgcaacgcg
      781 gctgcatcga ggaacagggc gaggaattgc gcctgaccga ggccggccga cgctggttcg
      841 ccgagttgca gatagatgta gaagctgccg ccggacgccg gcgccacctg tgtcgcccct
      901 gcctggactg gagcgagcgc cgccatcacc tcggcggtgc actcggcgca catttgctgc
      961 agcgcctgct gcagctgggc tgggccaaac gcgacccggc ctcacgggtg gtcgcgttca
     1021 gcgcccgtgg cgagcgcgag ctggagcgtc tgctgcaggg ttgagcggtg tcagccccgc
     1081 atcgatttca gctacatgac ctcgtcatgc cgagcagcgg cgctgaggac ttgctcaggg
     1141 cttggaccag cgctgcgccg cctgctgatc gctgcagcgc ccttccaccc agcgcgctcc
     1201 gtccggggtt tcttcctttt tccagaacgg cgcgcgggtc ttcaggtaat ccatgatgaa
     1261 gttgcaggcg tcgaacgccg cctggcgatg ggcgcttgcg gtgccgacga agacgatggg
     1321 ctcgcccggc tgcagccggc cgacccggtg cagcacttcc acccgcagca acggccagcg
     1381 ctgctcggcc tcgccgacga tgccggccag ggccttctcg gtcatgcccg ggtagtgctc
     1441 gaggaacatg ccgtgcacgt cccggccatc gttgtagtcg cgcacatagc cgacgaatgt
     1501 agccaccgca ccgatgccca ggttggcggc gtgcagcgca ttgagctcga cgcccggatc
     1561 gaaggcttcg acctgaattc tgatactcat aaaattgccc tcaaagcgta gcgagcgggt
     1621 atcagctcgg ggcggacgga gcacaggaac cggaatgtac aactagtaca tgaggattcc
     1681 gagcaccgcc caacccgaga tcacacacgc gcagtagctt tgtgggcaat tttcaaccgc
     1741 ctgtgaccgt ggggaagaag gcgatctcgt caccgtcggc gatttcggtc tccaggccgc
     1801 agagttcctg attacgcgcg cacatcagat tctgctcggc cagcacctgc cacacgccgc
     1861 cgcggctgag caggtgctcg cgcagctgct ccaggttgcc cagggcggcg cgctgcagtt
     1921 gctcgccgtc gatgcccagt acctctcggt agcgggcgaa atactgtacg cggatcatgt
     1981 caggctccct gcctcgtgat agtccagtct gtagtcgccg ctcttgccgc cggacttctc
     2041 cagcaggcgc acggcttcga taacgatgcc gcggtccacg gccttgcaca tgtcgtagag
     2101 ggtcagcgcg gcgacgctgg cggcggtcag cgcctccatc tccacgccgg tctgcccggc
     2161 cagcttgcag cgcgcctgga tgcgcacgca gtcgatgccc tcgacctgca gctcgacctt
     2221 gacgctggtg agcagcagcg gatggcacag cgggatcagt tcgtgggtct tcttcgccgc
     2281 ctggatgccg gcgatgcgcg ccacggcgaa cacgtcgccc ttggggtggc tgccgtcggc
     2341 gatcatcgcc agggtggcgg gcagcatgcg cacgcgggct tcagccagcg cctcgcgcga
     2401 ggtcaccgcc ttctcggtga cgtccaccat gttggcgcgg ccttgggaat cgagatgggt
     2461 cagcacggtc ttgctccggg gtcgatgcgg gcattgtaac gccgccgcag acgggagcgc
     2521 gcgtccgcga cgcccctccg gtcggaggag cgtgcgggcg cagcggttac atgtgggctt
     2581 cggcgtactc ggccagtacc gagcgcggca cgccctgcag ggtcacgtgc acgccatggg
     2641 ggaagtcctt gaagcgctcg gtgaggtagg tcaggcccga actggtggcg gagaggtagg
     2701 gggtgtcgat ctgcgccagg ttgcccaggc agatcacctt cgaaccgttg ccggcacggg
     2761 tgatgatggt cttcatctgg tgcggggtga ggttctggca ctcgtcgatc aggatcaggc
     2821 tctgctggaa gctgcgcccg cggatgtagt tgagcgattt aaattgcagc ggcaccttct
     2881 gcaggatgta gtcgacgctg ccgtgggtgc tctcgtcgtc cgagtgcagc gcctccaggt
     2941 tgtcggtgat ggcgccgagc cagggctcca tcttttccgc ctcggtaccg ggcaggaagc
     3001 cgatgtcctc gtccagcccc tgcacgctgc gggtggcgat gatgcgccgg tagcgcttgc
     3061 tgaccatggt ctgttcgatg gccgcggcca gcgccaggat ggtcttgccc gagccggcgg
     3121 cgccggacag gttgaccagg tggatgtccg gatcgagcag cgcgtacagc gccagcgcct
     3181 ggtagatgtc ccgcgggcgc aggccccagg cctcctggtg cagcaacggc tcctgatgca
     3241 ggtcgaggat ggtcagactg ctgccctcga tgcccttgac ccagccgacg aagccctgct
     3301 cgtcgacgat gaattcgttg atgtgcaccg ccggcaggtt gtcggtgagc tgcacctggt
     3361 gccaagtgcg gccatggccc tggcgcgtct cgaccttgct cacgcggtcc cagaaggagc
     3421 cggcgagatt gtgataaccg cgcgacagca ggttgacgtc atccaccagc tggtcggtgt
     3481 ggtagtcctc ggcggagata ccgcaggcac gcgccttcag gcgcatgttg atgtccttgg
     3541 tcaccagcac cacgcgcatg ccggggttgc tgctgcgcag gtcgaccagc tggttgatga
     3601 tcttgttgtc gttgaggttc tccggcagcc aggtgatcgg ctccgcgcgc ttgctcatga
     3661 ggatcgacaa ggtgcccttg ggcccgctct tgccgcgctg gatggggacg cccttctcga
     3721 cgtcttcggg gatcgcgtcg ccgagcacct ggtcgatcag gcggatggcc tggcggcatt
     3781 cggcggcgac ggtgtgcttg ccggtcttga gcttgtccag ctcctccagc acggtcatcg
     3841 ggatggcgac gtggtgttcc tggaaattca gcagtgcgtt ggggtcgtgg atcaggacgt
     3901 tggtgtcgag gacgtagagg gtgggctggg tgaagcgggt gcgtccgtga tcatccatac
     3961 tcggtcacct tatcgagggg cctggacgac agagcctcta cagctccgtc gcggaggacc
     4021 gcccacctcc cgaacggggc gggatacgca agcaaaagtg atggccgagg gccgccacct
     4081 gtgctgcagg gttcggcggt ctgctttttt aataccccaa tctggatgac agaaaaaaga
     4141 actttttctg cggcagaacg cttttttatc ggctcgacga ataacgcttg gcggtacccg
     4201 gatgcgccgt tacattcgga agtcctgcct ccggcgatgc gctccgcttc gccgctccgc
     4261 ctcccctggc aaatcctacc ccgccgcacc ttggcgagcg ctccatcgag ccccacacat
     4321 ctcgcaacga caggcttggc gatccgtaac agcgagccgg taaagtagcg gaataatcac
     4381 aagaatcgct ctattccgca ccttagccgt aacctgaaga gattcgttca tgaccccgac
     4441 acgctacacc cccgcgcaaa tcaccctgca ctggctcagc gccctgctgg tcctgctgat
     4501 catcgccctg ccctatggca gcgacctgtt cgagccgctg ctcggcggcg gcgcaggcgt
     4561 cttcaccctg cacaagtcgc tcggtctgct ggtgatgctg ctcaccctgc tgcgcctggc
     4621 ggtgcgcacc cgctccggcg cgcccgagct gctcgccagc gaaccgccgc tgcagcgctt
     4681 cgccgccaag ggtggacacg ccctgctgta tctgttgttg ctgctcatgc cgctgaccgg
     4741 cctgctgttc ggcaagcgcc cggtgaacct gttctggctg gtggagatcg gaccgctgcc
     4801 gctgtccgac gcgattcgcg gcgcggccaa gaccttccac gtcaccgccc agtacctgct
     4861 cttcgcgctg atcctcggcc acgccggcat ggccctgtgg caccaccatg tgcgccgtga
     4921 caacgtgctg cgctcgatgc tgccggcgcg cgactagccg ccattccgca tcgataggca
     4981 aacccctcgg cgccgatagc tggagc
//
LOCUS       DATIHC010000583         2661 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_45086, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000583 DATIHC010000000
VERSION     DATIHC010000583.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2661
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45086"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1230)
                     /gene="brnQ"
                     /locus_tag="VLF16_09625"
     CDS             complement(<1..1230)
                     /gene="brnQ"
                     /locus_tag="VLF16_09625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transport system II
                     carrier protein"
                     /protein_id="HSX71182.1"
                     /translation="MTRLKSLDLLALGFMTFALFLGAGNIIFPPSAGMAAGEHVWSAA
                     FGFLITGVGLPLLTVVALARVGGGMNELTAPLGRRAGILLAVAVYLAIGPLFATPRTA
                     VVSFEMGVAPFTGNEPLPLFIYTAAYFCAVLFLALNPGKLVDSIGKFITPVLLAALLV
                     LGGAALLAPAGEIGQSAEAYQANPFVKGFLEGYLTMDTLGALVFGIVIATAIRDRGVS
                     EGRLVTRYSVIAGVIAATGLSLVYLALFYLGATSQGIAGDAQNGVQVLTTYVQHTFGT
                     YGSLLLAVVITLACLTTAVGLLSACGEYFSTLLPVSYKTVVLVFGLFSLVVSNQGLTQ
                     LISVSVPVLVGLYPLAIVLVGLSLLSGCWRSAPRVFVPTMAVTLVFGLVDACNAAGFK
                     HLVPDLFAHLPLAEQGLG"
     gene            complement(1510..2397)
                     /gene="sucD"
                     /locus_tag="VLF16_09630"
     CDS             complement(1510..2397)
                     /gene="sucD"
                     /locus_tag="VLF16_09630"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HSX71183.1"
                     /translation="MSVLINKDTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKG
                     GTTHLGLPVFNTVKEAVEATGADASVIYVPAPFCKDSILEAAFGGIKLIVCITEGIPT
                     IDMLEAKVKCDELGVRLIGPNCPGVITPGECKIGIMPGHIHLPGKVGIVSRSGTLTYE
                     AVKQTTDVGLGQSTCIGIGGDPIPGSNFIDILKLFQEDPKTEAIVMIGEIGGSAEEEA
                     AAYIKANVTKPVVSYIAGVTAPPGKRMGHAGAIISGGKGTADEKFAALQDAGVKTVRS
                     LADIGKALAELTGWEVKNA"
     gene            complement(2397..>2661)
                     /gene="sucC"
                     /locus_tag="VLF16_09635"
     CDS             complement(2397..>2661)
                     /gene="sucC"
                     /locus_tag="VLF16_09635"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250279.1"
                     /note="catalyzes the interconversion of succinyl-CoA and
                     succinate; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="succinate--CoA ligase subunit beta"
                     /protein_id="HSX71184.1"
                     /translation="FKIILSDSNVAAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKIPV
                     VVRLEGNNAELGAKVLADSGLNIIAATSLTDAAQQVVKAAEGK"
BASE COUNT          488 a          829 c          918 g          426 t
ORIGIN      
        1 gccgagcccc tgctccgcca gcggcagatg ggcgaacaga tcgggcacca ggtgcttgaa
       61 accggccgcg ttgcaggcat cgaccaggcc gaaaaccagg gtcaccgcca tggtcggcac
      121 gaacacccgg ggcgcggaac gccagcagcc gctcagcagg ctcagcccca ccagcacgat
      181 ggccagcgga tacagcccca ccagcaccgg caccgacacg ctgatcagct gcgtcagtcc
      241 ctggttcgac accaccaggc tgaacaggcc gaacaccagc accacggtct tgtaggacac
      301 cggcaacagc gtgctgaagt actcgccaca ggcgctcagc aggcccaccg cggtggtcag
      361 gcacgccagg gtgatcacta ccgccagcag caggctgccg taggtaccga aggtgtgctg
      421 cacataggtg gtgaggacct gcacgccgtt ctgcgcatcg ccggcgatgc cctggctggt
      481 ggcgccgagg tagaacagcg ccaggtagac cagcgacagg ccggtggcgg cgatcacgcc
      541 ggcgatcacc gagtaacgcg tgaccagccg gccttcgctg acgccgcgat cccggatcgc
      601 cgtggcgatg acgatgccga acaccagtgc gccgagggta tccatggtca ggtagccctc
      661 caggaagccc ttgacgaagg ggttggcctg gtaggcctcg gcgctctggc cgatctcgcc
      721 ggccggagcc agcagcgcgg cgccacccag gaccagcagc gcggcgagca gcaccggggt
      781 gatgaacttg ccgatgctgt cgaccagctt gcccggattg agcgcgagga agagcacggc
      841 gcagaagtac gcagcggtgt agatgaacag cggcagcggc tcgttgccgg tgaaaggcgc
      901 gacgcccatc tcgaacgaca ccacggcggt gcgcggagtg gcgaacagcg ggccgatggc
      961 cagatagacg gccaccgcca gcaggatgcc ggcacgccgg ccgagcggcg cggtcagctc
     1021 gttcatcccg ccgccaacgc gagccagggc gaccacggtg agcagcggca ggccgacgcc
     1081 ggtgatgagg aagccgaagg cggcggacca gacgtgctcg ccggcggcca tgccggcgct
     1141 gggcgggaag atgatgttgc cggccccgag gaacagggca aaggtcatga agcccagggc
     1201 caggaggtcg aggcttttca aacgagtcat agcaggaagt accacaggca ggaattcata
     1261 gaaaacggca gggtttccgc tggattggga aacgtcaccg aaccgggtgg gatcggtcac
     1321 agggatcgat gcaggccctt gtggggccgg taacgaaggg ggcgcaagcc taacggcttt
     1381 tgtcgccggt tgcgtccggc ggcggtcggg ctgtcggccc gaggcaatta ggtgtcgcct
     1441 gggcgcaata tgcggccgga aatgaaagag gccgcccggg gggcggcctc cttaacagtc
     1501 gcgagcgcct taggcgttct tgacttccca gccggtcagc tcggccaggg ccttgccgat
     1561 gtcggccagg gaacgcacgg tcttcacacc ggcgtcctgc agggcggcga acttctcgtc
     1621 cgcagtgccc ttgccgccgg agatgatggc gccggcgtgg cccatgcgct tgccgggcgg
     1681 agcggtcaca ccagcgatgt aggagactac aggcttggtg acgttggcct tgatgtaggc
     1741 cgcggcttct tcttcagcgc tgccgccgat ctcaccgatc atgacgatcg cttcggtctt
     1801 cgggtcttcc tggaacagct tcaggatgtc gatgaagttg gagcccggga tcgggtcgcc
     1861 gccgatgccg atgcaggtcg actggccgag gccgacgtcg gtggtctgct tcacggcttc
     1921 ataggtcagg gtgccggaac gcgacacgat gcctaccttg cccggcaggt ggatgtgacc
     1981 cggcatgatg ccgatcttgc actcgccggg agtgatcacg cccgggcagt tcgggccgat
     2041 taggcgtacg cccagctcgt cgcacttgac cttggcttcc agcatgtcga tggtcgggat
     2101 gccttcggtg atgcagacga tcagcttgat gccgccgaag gccgcttcga ggatggaatc
     2161 cttgcagaac ggagccggaa cgtagatcac cgaagcgtcg gcgccggtgg cttccacggc
     2221 ttccttgacg gtgttgaaca ccggcaggcc caggtgggtg gtgccgccct taccgggggt
     2281 cacgccgcca accatcttgg tgccgtaggc gatggcctgt tcgctgtgga aagtgccctg
     2341 cgagccggtg aagccctggc agatgacttt ggtgtctttg ttgatcagga cgctcattac
     2401 ttgccctccg cggctttgac gacctgctgg gcagcgtcgg tgaggctggt agccgcgatg
     2461 atgttcagac cgctgtcggc caggaccttg gcgcccagct cggcattgtt accttccaga
     2521 cgaaccacga ccgggatctt cacgccgact tctttcacgg cgccgatgat gccttcggcg
     2581 atcatgtcgc agcgcacgat gccgccgaag atgttcacca gaacggcagc gacgttgctg
     2641 tcggacagga tgatcttgaa g
//
LOCUS       DATIHC010000584         1700 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13172, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000584 DATIHC010000000
VERSION     DATIHC010000584.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13172"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..471)
                     /locus_tag="VLF16_09640"
     CDS             complement(<1..471)
                     /locus_tag="VLF16_09640"
                     /EC_number="1.11.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019410261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004096 - catalase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HSX71185.1"
                     /translation="MSAKKPSQVAGSNTLDRANSNAKLDQLEEWREDATGEALTSNTG
                     VRVADNQNSLKAGERGPSLLEDFLLREKITHFDHERIPERVVHARGAAAHGYFQVYEP
                     LSDLTKADFLNHPEKKTPVFVRFSTVQGPRGSADTVRDVRGFATKFYTDEGNFDL"
     gene            complement(567..1010)
                     /locus_tag="VLF16_09645"
     CDS             complement(567..1010)
                     /locus_tag="VLF16_09645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009396135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YetF domain-containing protein"
                     /protein_id="HSX71186.1"
                     /translation="MDAVLRAAAIYIALLILFKLAGRRSLAQLTTFDFVLLLIIGEAT
                     QQALLGEDFSVTNAVLVIMTLIALDVGASLLKRRSERIAYLLDGSPTIVVENGVALEE
                     RLAKARLRLEDIMESARESGLERVEQIKFAIIERNGKISIIPREQ"
     gene            complement(1028..1531)
                     /locus_tag="VLF16_09650"
     CDS             complement(1028..1531)
                     /locus_tag="VLF16_09650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017529041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71187.1"
                     /translation="MAADEGRSRTYPVHENMPLQRMAWRMERLGWYCLVLLAVLALAG
                     LFSKGPLSTATVASADNSLRLEYQRFARNGAQSQLMIDARGAGESLDIVLAGELLDGF
                     SIESMQPQPQQSTSHPGNGLRLRMATNEQGQVRVRIQLKAGGVGPFASTLSLADQQVE
                     LRQFIYP"
BASE COUNT          272 a          554 c          575 g          299 t
ORIGIN      
        1 cagatcgaag ttgccctcgt cggtgtagaa cttggtggcg aagccgcgca cgtcgcgcac
       61 ggtatcggcc gagccgcgtg gcccctgcac ggtggagaag cgcacgaaca ccggcgtctt
      121 cttctcgggg tgattgagga aatcggcctt ggtcaggtcg ctcagcggct cgtagacctg
      181 gaagtagccg tgggcggccg caccgcgggc atgcaccacg cgctcgggaa tgcgctcgtg
      241 gtcgaagtgg gtgatcttct cgcgcagcag gaagtcttcg agcagcgacg gaccgcgctc
      301 gccggccttc aggctgttct gattgtcggc cacccgtacc ccggtgttcg aggtcagcgc
      361 ctcgccggtg gcgtcttcgc gccattcctc cagctgatcg agcttggcgt tgctgttggc
      421 gcggtccagc gtgttgctgc cggcgacctg actcggtttc ttcgcggaca ttgtgtcgtt
      481 ctcctcgtgg ctaagggtgg tgccctgtag ctatgagaaa accgagctcg agaggttcta
      541 gcgatttcgt cggccgcgcg ggccgctcac tgctcgcgcg ggatgatgga aatcttgccg
      601 ttgcgttcga tgatcgcaaa cttgatctgc tcgacccgct ccaggccgct ctcgcgggcc
      661 gactccatga tgtcctccag ccgcaggcgc gccttggcca ggcgctcctc cagggccacg
      721 ccgttctcca ccacgatggt cggcgagccg tcgagcagat aggcgatgcg ctcggagcgg
      781 cgcttgagca gcgaggcgcc gacgtcgagg gcgatcagcg tcatgatcac cagcacggca
      841 ttggtgacgg agaagtcctc gcccagcagc gcctgctggg tggcttcgcc gatgatcagc
      901 agcagcacga agtcaaaggt ggtcaactgc gccagcgagc ggcggccggc gagcttgaac
      961 aggatcagca gggcgatgta gatggcggcg gcacgcagga cagcgtccat gtcgactcct
     1021 agatcggtca gggatagatg aactggcgca gctcgacctg ctggtcggcg aggctcaggg
     1081 tcgaggcgaa ggggccgacg ccgccggcct tcaactggat gcgcacgcgc acctggccct
     1141 gctcgttggt ggccatgcgc aggcgcaggc cattgccggg gtggctggtg ctctgctgcg
     1201 gttgcggctg catcgactcg atgctgaagc cgtcgagcag ctcgccggcg aggacgatgt
     1261 ccagcgactc gcccgcccca cgcgcatcga tcatcagttg cgactgggcg ccgttgcggg
     1321 cgaagcgctg gtattccagc cgcaggctgt tgtcggcgct ggccaccgtg gcggtgctca
     1381 gcggcccctt ggaaaacagc cccgccagcg ccagtaccgc cagcaatacc aagcagtacc
     1441 agcccagtcg ctccatgcgc caggccatgc gttgcaacgg catgttttcg tgaaccggat
     1501 aggtgcggct gcggccctcg tcggcggcca tggcaatctc ccgcggtgcg cgatcgcgtt
     1561 acaagcagtg actggcaccg cgccgccgga gttcgcagaa aaaccgcccc gcgaccaccc
     1621 gtcccgcggg ctgaactcgc ccgcgccgcg tccgttcgat acctcatcga ccccacgaac
     1681 gaggaacgac tcatgcgcgc
//
LOCUS       DATIHC010000585         5781 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36675, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000585 DATIHC010000000
VERSION     DATIHC010000585.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5781
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36675"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..692)
                     /locus_tag="VLF16_09655"
     CDS             complement(<1..692)
                     /locus_tag="VLF16_09655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015275365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HSX71188.1"
                     /translation="MDAFILLGSFLLLIAVRMPVAYALGLSALAGAWWIDIPFHAVMI
                     QVAGGVNKFSLLAIPFFVLAGTIMAEGGMSRRLVAFAGVLVGFIRGGLSLVNIMSSAF
                     FGAISGSSVADTASVGSVLIPEMAKKGYPREYSTAVTVSGSVQALLTPPSHNSVLYSL
                     AAGGTVSISSMFIAGIGPGLLLTAVMMSMCLFFAKKRNYPKGEVIPLRQALKICVEAL
                     WGLMTMVIILGG"
     gene            complement(692..1222)
                     /locus_tag="VLF16_09660"
     CDS             complement(692..1222)
                     /locus_tag="VLF16_09660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019098127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HSX71189.1"
                     /translation="MKDQVLRINDTIYMTCIWVAGLSVAAMSLMIPWGIFARYVLGSG
                     SSWPEPVAILLMVLFTFIGAAASYRAGAHMAVTMITDRLPEHLQGYIEILVQLLMATI
                     CLFMLIWGIKLCAATWNQYNSALPFLRIGLCYSPIPLGGALSLIFILERLFLGDQSHR
                     RVVNYEQHEDNNEAVQ"
     gene            complement(1295..2263)
                     /locus_tag="VLF16_09665"
     CDS             complement(1295..2263)
                     /locus_tag="VLF16_09665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003254830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HSX71190.1"
                     /translation="MNFKRKLLAAALPFAFCLSGTAHALDIKFAEIHPAGYPTVVAEE
                     NMGKKLAAADSDITFKMFAGGVLGSEKEVVEQVQIGAIQMTRVSLGIVGPVVPDVNVF
                     NMPFVFRDQAHMRKVIDGEIGQEILDKITNSEFNLVALAWMDGGTRNLYTKEPVRKIE
                     DLQGMKVRVMGNPLFVDMMNAMGGNGVAMDTGEIYSALQTGVIDGAENNPPTMLEHNH
                     YQNAKYYTLTGHLILPEPVVMSKETWNSLTPKQQELVKKLAKEAQLEERQLWDAKVAA
                     SEEKLKAAGVEFITVDKKPFYDATAPVREKYGAQYADLMKRISEVQ"
     gene            complement(2311..3192)
                     /locus_tag="VLF16_09670"
     CDS             complement(2311..3192)
                     /locus_tag="VLF16_09670"
                     /EC_number="3.1.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010490930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HSX71191.1"
                     /translation="MQAELIFDARNGVGESPVWSAREQALYWVDIPAGRLHRWSAADE
                     QVSSWQSDEMIGCVSRSADGQGWIAGQESGVFELRPQDDGRLAATRLAGVEHAAPGMR
                     FNDGRCDRQGRLWLGSMLMDMAAGAPLGRLYRFSEGRLQAQLDELIVPNGLAFSPDGR
                     IMYLSDSHPDVQAIWAFDYDIDTGTPHNRRLFVDMRQHLGRPDGAAVDADGCYWICGN
                     DAGLVHRFTPDGRLDRSLAVPVKKPAMCAFGGRDLDTLFVTSIRPGGDLADQPLAGGV
                     FALRPGVKGLEEPPFAV"
     gene            complement(3238..4059)
                     /locus_tag="VLF16_09675"
     CDS             complement(3238..4059)
                     /locus_tag="VLF16_09675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010490931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HSX71192.1"
                     /translation="MTTTSSAPRPFNRLLLTGAAGGLGKVLRQRLRPYAEVLRLSDIA
                     SMEPATGTHEEVVPCDLADKAAVHALVEGVDAILHFGGVSVERPFEEILGANIAGTFH
                     IYEAARKHGVKRVVFASSNHVIGFYSQNEHIDAAAARRPDGYYGLSKSYGEDMASFYF
                     DRYGIETVSIRIGSSFPEPANRRMMHTWLSYDDLTQLIERCLYTPNVGHTVVYGASAN
                     RDVWWDNHLAAHLGFAPQDSSEVFRDKVEAQPPVAADDPAALYQGGAFCAQGPFD"
     gene            complement(4469..>5781)
                     /locus_tag="VLF16_09680"
     CDS             complement(4469..>5781)
                     /locus_tag="VLF16_09680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter permease"
                     /protein_id="HSX71193.1"
                     /translation="SGGLISAILLKIPGTPSSIATVFDGGPLMEQGHGVKALGVGIVF
                     SFLGTIFSIVALMFIAPQLAKVALSFGPHEYFAIAVFSLTLIATLSAGSMVKGLFAGA
                     LGIAVSTVGIAPVEALRRFTFGVSELNGGFSMLTVMIGMFAVAEIIKLAETGRHTVQG
                     KARSVSMKHIKGFGFSLKEFREQLPNAGRSGLIGLGIGILPGIGAGTSNLVSYIIAKK
                     RAKDGDTYGKGNIGGVVASETANNAGIGGAMMPLMTLGIPGDTVTAIMLGGFLIHGIQ
                     PGPLLFISQGPLVYTIFAALIVATVMMLFMEFYGLRLFIKLLDVPKHILLPIILVLCV
                     VGAFGLSSRLFDVWSILLFGLLGYAFVKAGMPAAPFIIGFILGPMAETNLRRGLMLSD
                     GRFTDFFTSPIAGTFLALALLFILWQALSALRPKPSAINEILRT"
BASE COUNT         1020 a         1733 c         2022 g         1006 t
ORIGIN      
        1 atgccgccga ggatgatgac catggtcatc agcccccaca gggcctcgac gcagatcttc
       61 agcgcctggc gcaggggaat cacttcaccc ttggggtagt tgcgcttctt ggcgaagaac
      121 aggcacatgc tcatcatcac cgcggtgagc agcaggcccg ggccgatgcc ggcgatgaac
      181 atcgaggaga tcgacaccgt gccgccggca gccagcgaat agagcaccga gttgtggctg
      241 ggcggagtga gcagcgcctg gaccgagcca ctgacggtga ccgcggtgga gtactcacgc
      301 gggtagccct tcttggccat ttccgggatc agcaccgagc cgaccgaggc ggtgtccgcc
      361 accgacgagc cggagatggc gccgaagaag gccgaggaca tgatgttgac cagcgacagg
      421 ccgccacgaa tgaagcccac cagcacgccg gcgaacgcca ccaggcggcg cgacatgccg
      481 ccctcggcca tgatcgtgcc ggccagcacg aagaacggga tggccagcag ggagaatttg
      541 ttgaccccgc cggcgacctg gatcatcacc gcgtggaagg gaatgtcgat ccaccaggcg
      601 ccggccaggg cggacaggcc cagggcatag gccaccggca tgcgcacggc gatcagcagc
      661 aggaagctgc cgagaagaat gaaggcatcc attactgcac ggcctcgttg ttgtcttcgt
      721 gctgctcgta attgaccacg cggcgatggc tctggtcgcc gaggaacagg cgttcaagga
      781 tgaagatcag gctcagcgca ccgcccaggg gaatcgggct gtagcacagg ccgatgcgca
      841 ggaacggcag ggcgctgttg tactggttcc aggtggcggc gcacagcttg atgccccaga
      901 tcagcatgaa caggcagatg gtcgccatca gcagctgcac caggatttcg atatagccct
      961 gcagatgttc cggcaggcgg tcggtgatca tggtcaccgc catgtgtgcg ccggcgcggt
     1021 agctggcggc ggcgccgatg aaggtgaaca gcaccatcag cagaatggcg acgggctccg
     1081 gccagctgga gccgctgccg agtacgtagc gggcgaagat gccccagggg atcatcagcg
     1141 acatggccgc gacggacagc cccgcgaccc agatgcaggt catgtagatg gtgtcgttga
     1201 tgcgtagcac ttggtctttc atggaaactt caccagcacc acggcggggg ccatcaggcc
     1261 gccgccgtgg tgttcatcag ggagtgagtc ggtgttactg gacttcgctg atgcgcttca
     1321 tcaggtcggc atactgcgcg ccgtacttct cgcgtaccgg agcggtggcg tcgtagaagg
     1381 gcttcttgtc gacggtgatg aactcaacgc cggcggcctt gagcttctct tcgctggcgg
     1441 cgaccttggc gtcccacagc tgacgctctt ccagctgagc ttccttggcg agcttcttca
     1501 ccagctcctg ctgcttgggc gtcagcgagt tccaggtttc cttggacatc accaccggct
     1561 ccggcaggat caggtgaccg gtcagggtgt agtacttggc gttctggtag tggttgtgct
     1621 cgagcatggt tggcgggttg ttctcggcac cgtcgatcac gccggtctgc agggcgctgt
     1681 agatctcgcc ggtgtccatg gccacgccgt tgccgcccat ggcattcatc atgtcgacga
     1741 acagcgggtt gcccatcacg cgcaccttca tgccctgcag gtcctcgatc ttgcgcaccg
     1801 gctccttggt gtagaggttg cgggtgccac cgtccatcca ggccagggcg accaggttga
     1861 attcggagtt ggtgatcttg tcgaggattt cctggccgat ctcaccgtcg atgaccttgc
     1921 gcatgtgcgc ctggtcgcgg aacacgaacg gcatgttgaa cacgttcacg tccggtacca
     1981 ccgggccgac gatgccgagg ctgacgcggg tcatctggat ggcgccgatc tgcacctgct
     2041 cgaccacctc cttctccgag ccgagcacgc cgccggcgaa catcttgaag gtgatatcgc
     2101 tgtcggcggc ggccagcttc ttgcccatgt tctcctcggc gaccacggtc gggtaaccgg
     2161 ccgggtggat ctcggcgaac ttgatgtcga gggcatgagc ggtgcccgac aggcagaagg
     2221 cgaagggcaa ggcggcggca agcagtttgc gtttgaagtt catgagtctc tcccttgttg
     2281 tttttgttgg aacgcgtttt ggatggccgt tcagacggcg aacgggggtt cttcgagtcc
     2341 cttcacgccg ggcctcagag cgaacacgcc accggccagc ggctgatcgg cgaggtcgcc
     2401 gcccgggcga atggaggtga cgaacagggt gtcaaggtcg cgcccgccga acgcgcacat
     2461 ggccggcttc ttcaccggta cggcgaggga gcggtcgagg cggccgtcgg gggtgaagcg
     2521 gtggaccagg ccggcgtcgt tgccgcagat ccagtagcag ccatcggcgt cgacggcggc
     2581 accgtccggc cggccgagat gctggcgcat gtcgacgaac aaccggcgat tgtgtggcgt
     2641 gcccgtgtcg atgtcgtaat cgaaggccca gatggcctgc acgtcgggat gcgagtcgga
     2701 caggtacatg atgcgcccgt ccgggctgaa ggccaggcca ttgggcacga tcagctcgtc
     2761 gagctgggcc tgcaggcgac cttcggaaaa gcggtagagc cggccgagcg gcgcgccggc
     2821 ggccatgtcc atcagcatgc tgcccagcca caggcggccc tggcggtcgc agcgaccatc
     2881 gttgaagcgc atgccgggcg cggcgtgctc gacgccggcg aggcgggtgg cggcgaggcg
     2941 gccgtcatcc tgggggcgca gctcgaacac gccgctttcc tggccggcga tccagccctg
     3001 gccgtcggcg ctgcgggaga cgcagccgat catctcgtcg ctctgccagc tgctcacctg
     3061 ctcgtcggca gcgctccagc ggtgcaggcg cccggccggg atatcgaccc agtacagcgc
     3121 ctgttcgcgg gcactccaca ccgggctttc gccaacgccg ttacgggcgt cgaaaatcag
     3181 ttctgcttgc atggcgatgt ctcttgttgt tgttcgcgag gctgcaagag gggctggtca
     3241 gtcgaacggc ccctgggcgc agaacgcgcc gccctggtag agcgcggcgg gatcgtcggc
     3301 cgccaccggc ggttgcgcct cgaccttgtc gcggaacact tcggagctgt cctggggggc
     3361 gaagcccagg tgcgcggcca ggtggttgtc ccaccacacg tcgcggttgg ccgaggcgcc
     3421 gtagaccacg gtgtggccga cgttcggggt gtacaggcag cgctcgatca gctgggtgag
     3481 gtcgtcgtag ctcagccagg tgtgcatcat gcggcggttg gcgggctcgg ggaacgagga
     3541 gccgatgcgg atgctgacgg tctcgatgcc gtagcggtcg aagtagaagc tggccatgtc
     3601 ttcgccgtag gacttggaca ggccgtagta gccatccggg cggcgcgccg cggcggcgtc
     3661 gatgtgctcg ttctgcgagt agaagccgat cacgtggttg gagctggcga acaccacgcg
     3721 cttcacgccg tgcttgcgcg cggcttcata gatgtggaag gtgccggcga tgttggcgcc
     3781 gaggatctcc tcgaacggcc gctcgaccga gacgccgccg aaatgcagga tggcgtccac
     3841 gccttcgacc agcgcatgca ccgcggcctt gtcggcgagg tcgcagggaa ccacttcttc
     3901 atgggtgccg gtggcgggtt ccatcgatgc gatgtcggag aggcgcagca cttcggcgta
     3961 ggggcgcagg cgctggcgca gtaccttgcc gaggccaccg gcggcgccgg tgagcaggag
     4021 gcggttgaag ggacgtgggg cgctggatgt cgtggtcatg acgggcctga tctttccgct
     4081 tgttgttatt ggtgtcatac gttgtcgtat gacatgggtc gattatcatc agcgaccgga
     4141 gcagtgtcaa cgcgacctaa gttgaatgtg agcggaaaat ctcgcgattt tgtcgcgaaa
     4201 atccgcctca tggcgggcgc tttttttctg accggaaggt ctgttacggg cattgcaggc
     4261 attttcggcc gcatcagacc ctggcgtcca catcgatcgt gggtcaggtc ggcgaggcgc
     4321 agccgggaag atgtcgatgt tgtacgatga catcgtcgct gcgggcttat tcacttcttt
     4381 tctaacgacg cgttgcgcag tgccgagacg tgcagatcgc gacgcgacgg ggcttgcccc
     4441 actccagggg aatggggcaa ggcagccctc aggtgcgcag gatctcgttg atcgcactgg
     4501 gcttgggacg cagtgcgctc aaggcctgcc agaggatgaa cagcagggcc agcgccagga
     4561 aggtgccggc gatgggggag gtgaagaagt cggtgaaacg tccgtcggat agcatcagcc
     4621 cgcggcgcag gttggtctcc gccatggggc cgaggatgaa gccgatgatg aacggtgccg
     4681 ccggcatgcc ggccttgacg aaggcgtagc cgagcaggcc gaacagcagg atcgaccaga
     4741 cgtcgaacag gcggctggac aggccgaacg cgcccaccac gcacagcacc aggatgatcg
     4801 gcagcaggat gtgcttgggc acgtcgagca gcttgatgaa caggcgcagg ccgtagaact
     4861 ccatgaacag catcatcacc gtggcgacga tcagcgccgc gaagatggtg tacaccagcg
     4921 ggccctggct gatgaacagc agcggaccgg gctggatgcc gtggatcagg aagccgccga
     4981 gcatgatcgc ggtgaccgtg tcgccgggaa tgcccagggt catcagcggc atcatcgcgc
     5041 cgccgatacc ggcattgttg gcggtctcgc tggccaccac gccgccgatg ttgcccttgc
     5101 cataagtgtc accgtccttc gcgcgcttct tggcgatgat gtaggacacc aggttggagg
     5161 tgcccgcacc gatgcccggg aggatgccga tgcccaggcc gatcaacccg gagcggccgg
     5221 cgttcggcag ctgttcgcgg aactccttga gcgagaagcc gaagcccttg atgtgcttca
     5281 tgctcaccga cctggccttg ccctgcacgg tatgacggcc ggtttcggcg agcttgatga
     5341 tctcggcgac ggcgaacatg ccgatcatca ccgtgagcat ggagaagccg ccgttgagtt
     5401 cgctgacgcc gaaggtgaag cggcgcagcg cttccaccgg ggcgatgccg acggtggaca
     5461 cggcgatgcc cagggcgccg gcgaacaggc ccttgaccat cgagccggcc gacagggtgg
     5521 cgatcagcgt cagggagaac acggcgatgg cgaagtattc gtgcgggccg aagctcagcg
     5581 cgaccttggc cagctgcggg gcgatgaaca tcagcgcgac gatgctgaag atggtgccga
     5641 ggaaggagaa cacgatgccg acgccaagcg ccttgacccc gtggccctgc tccatcagcg
     5701 ggccgccgtc gaacaccgtg gcgatggacg acggtgtgcc gggaatcttc agcaggatcg
     5761 ccgagatcag tccgccggag g
//
LOCUS       DATIHC010000586         2030 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_24098, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000586 DATIHC010000000
VERSION     DATIHC010000586.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24098"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..357)
                     /gene="yidC"
                     /locus_tag="VLF16_09685"
     CDS             complement(<1..357)
                     /gene="yidC"
                     /locus_tag="VLF16_09685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012020340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0051205 - protein insertion into membrane
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HSX71194.1"
                     /translation="MDIQRSILLVALAVVSYLMVLQWNEDYGQAAIPASASATVGGKP
                     QATLPDVPATTQAGNDVPTANVEANPQLSAPAATSDELIRVKTDVLELAIDPRGGDIV
                     QLTLPKYPRRQDRPDVP"
     gene            complement(361..597)
                     /gene="yidD"
                     /locus_tag="VLF16_09690"
     CDS             complement(361..597)
                     /gene="yidD"
                     /locus_tag="VLF16_09690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014854680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HSX71195.1"
                     /translation="MRKLAILPIQFYRYAISPLMASHCRFYPSCSCYMQQAIETHGVL
                     HGGWLGIRRLGRCHPWNPGGYDPVPPPSSPSMTE"
     gene            complement(590..985)
                     /gene="rnpA"
                     /locus_tag="VLF16_09695"
     CDS             complement(590..985)
                     /gene="rnpA"
                     /locus_tag="VLF16_09695"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003465119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004526 - ribonuclease P activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HSX71196.1"
                     /translation="MVSRDFGREKRLLTPRHFKAVFDSPSGKAPGKNVLLLARANDLD
                     HPRLGLVIGKKSVKLSVERNRLKRVIRDTFRLNQDSLGGLDIVVVARKGLGDLDNPEL
                     HQQFGKLWRRLARQRQDAAPPGVSDSSHA"
     gene            complement(999..1133)
                     /gene="rpmH"
                     /locus_tag="VLF16_09700"
     CDS             complement(999..1133)
                     /gene="rpmH"
                     /locus_tag="VLF16_09700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002551315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HSX71197.1"
                     /translation="MKRTFQPSTLKRARVHGFRARMATKNGRAVLSRRRAKGRKRLTV
                     "
     gene            1659..>2030
                     /locus_tag="VLF16_09705"
     CDS             1659..>2030
                     /locus_tag="VLF16_09705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009041466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA N-terminal domain-containing protein"
                     /protein_id="HSX71198.1"
                     /translation="MSVELWQQCVELLRDELPAQQFNTWIRPLQVESAGDELRVYAPN
                     RFVLDWVNEKYMVRLLELLAERANGLAPALSLLIGSKRGAAPRMAAPTLSTINSAPAA
                     AAPVAPASESSSDPLAVVAPTP"
BASE COUNT          386 a          568 c          662 g          414 t
ORIGIN      
        1 cggtacgtcc gggcgatcct gacgacgcgg atacttgggc agggtcagct ggacgatatc
       61 gccgccgcgg ggatcgatgg ccagctcgag cacatcggtc ttcacgcgga tcagctcgtc
      121 gctggtggca gcgggcgcgg acagctgggg gttggcttcc acattggcgg tcggtacgtc
      181 attgccggcc tgagtggtcg ccggaacatc cggcagcgtt gcttgcggtt tgccgccgac
      241 ggtggcgctg gcactggccg gaatggcggc ctggccgtag tcctcgttcc actgcagaac
      301 catcaggtac gacacgacgg ccagggcgac gagcaggatc gagcgttgga tgtccatgga
      361 ttactcggtc atcgaagggg aggaaggagg cggaaccgga tcgtaaccac cgggattcca
      421 aggatggcag cggcccaggc ggcgaatgcc gagccagccg ccatgcaaca cgccgtgagt
      481 ctcgatggct tgttgcatgt agcaggagca gctgggatag aagcggcagt ggctggccat
      541 caagggactg atggcgtagc ggtagaactg gatcgggagg atcgccagtt tacgcatgag
      601 agctgtcgct taccccggga ggggcggcat cttggcgctg ccgggccagg cgcctccaga
      661 gtttgccgaa ctgctggtgc agttccggat tgtccagatc gccaagccct ttgcgggcca
      721 ccacgacaat gtccaagccg ccgagcgaat cctggttgag ccggaaggta tcccggatca
      781 cacgcttgag tcggttgcgc tcgacggaga gcttgacgct tttcttgccg atcaccagcc
      841 ccaggcgggg atggtcgaga tcattggcgc gagcgaggag caggacgttc ttgcctggag
      901 ccttgccgct gggtgagtcg aataccgctt tgaagtgccg gggtgtcagc aggcgctttt
      961 cccgaccgaa gtctcgactc accacccgtt ccgatttatc agacggtcag acgcttgcgg
     1021 cccttggcgc gacgacgcga caggacggca cggccgttct tggtggccat gcgagcgcgg
     1081 aaaccgtgaa cgcgagcgcg cttgagggtg ctgggttgga aagtacgttt catggtgatt
     1141 tacctgggtg gtccatacgg gcctggatgg cccccgttta aagagaccgg cgattctagt
     1201 gaaaccgcgc cgccaggtca atttccaacc agcccggaat gagtaaagaa ggataagaga
     1261 aaagaaattc tttaaagctt gatctggttg ctttcgttag tgagctggtc aggctgtggg
     1321 taagtgcttc cagcgtgcag acgccacggg ttctgcggct ggataacact gtccgtaaac
     1381 ggtgcgcggc atgtgtgcca cgcgtgcatg acctgtgcaa gaaaggcctt tttgttcaca
     1441 gaagcattta tcctcatgcc tacacccagg cttctccacc gggttcacgg cacccttatc
     1501 cacagccttc cagcagcgca tcgcgaaatc cgagaacata agtaaatcct tgatttcact
     1561 ggtttgaaat ttccgaatcg tgtggataac tcggtggcca agggctacaa tgcgggctgt
     1621 tttttgcttc gccaatcgta gcgatccagg ggatatcagt gtccgtagaa ctttggcagc
     1681 agtgtgtcga gctgcttcgc gacgagttgc ccgcccaaca attcaatacc tggattcgcc
     1741 ctctgcaggt ggagtcggcg ggtgatgagc tgcgtgtcta tgcgccaaat cgcttcgtgc
     1801 tcgattgggt caacgagaag tacatggtgc gtctgctcga gctgctggcc gagcgcgcca
     1861 atggcctggc tccggcattg tcgctgttga ttggcagcaa gcggggcgca gccccgcgga
     1921 tggcggcacc tacgctctcc actattaaca gtgccccggc ggctgccgcg cccgttgcgc
     1981 cggccagtga atcgagcagc gatccattgg ccgtagtcgc acccacgccc
//
LOCUS       DATIHC010000587         2566 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_20267, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000587 DATIHC010000000
VERSION     DATIHC010000587.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2566
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20267"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..708)
                     /locus_tag="VLF16_09710"
     CDS             complement(<1..708)
                     /locus_tag="VLF16_09710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009407331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HSX71199.1"
                     /translation="MRSASFAPLPFRPRSLPAAICLALTLNAGLVSLPAHAAEPAPAA
                     AAPSIPAGPLGQALSTFAERAGITLSYSPDQVRDLRSPGLAGGGSLEDGLTALLAGSG
                     LVAHKTPTGYVVLPSKSGSSLQLEDTDIEASAERSAFEPANGYFASNSSTATKTDRPI
                     LETAQAISVVTAEQIADRNVDRVQDAVAYSAGVRVGSSGLDPRFDTISVRGFDTTMSA
                     DFLDGLRQPYNGWLSIYG"
     gene            complement(793..1722)
                     /locus_tag="VLF16_09715"
     CDS             complement(793..1722)
                     /locus_tag="VLF16_09715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009407332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4880 domain-containing protein"
                     /protein_id="HSX71200.1"
                     /translation="MNRGERLPALPEAIVRVAIDWQLRLRAGAGNPELQRQWQDWLHH
                     DPRHQLAWQRLQQMGGLFQPGQLPAAQVIPLLQRAEADLGRRRTLKLLGLGLAVGGSG
                     LLATQVPRTWHADFATRTGERRQVALPGDAEALLNTGSSLDMVNGELRLRGGEVLVQG
                     SDWRARCRFARCSGREASVLLREHDDYSEIRVQRGEALVSSARGEQRLQAGQGLAVSA
                     AGTHELGKGPLDPFGWTRGLLVVNDIRLADFLAEAARYRQGWLGCEPAVADLRLSGVF
                     HLDEPAAMLTNISYLLPVRVVERTRWWVRVVPA"
     gene            complement(1719..2234)
                     /locus_tag="VLF16_09720"
     CDS             complement(1719..2234)
                     /locus_tag="VLF16_09720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020293976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSX71201.1"
                     /translation="MPPHEESFVSLDRLYGAHHGWLQGWLRRSVGCSQQAADLAQDTF
                     VRLLVRNKPVSDQAPRALLVRIARGLVIDHWRRNALERAYLEALAQLPEASHPSPEVR
                     HEALQCLERIAQLLDGLKPKVREAFLLYQLGGLNHAQVAEQLGVSSRTVERHVASALL
                     HCYRACFEASA"
     gene            2483..>2566
                     /locus_tag="VLF16_09725"
     CDS             2483..>2566
                     /locus_tag="VLF16_09725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HSX71202.1"
                     /translation="MDRFTGGCLCGDVRFVVSGRPYRVGLCH"
BASE COUNT          392 a          848 c          945 g          381 t
ORIGIN      
        1 gccatagatc gacagccagc cgttgtaggg ctggcgcagg ccgtcgagga agtcggcgga
       61 catggtggtg tcgaagccgc gcacgctgat ggtgtcgaag cgcgggtcga ggcccgagct
      121 gcccacgcgt acgccggcgc tgtaggcgac ggcgtcctgc acgcggtcga cattgcggtc
      181 ggcgatctgc tcggcggtga ccacgctgat ggcttgcgcg gtttccagga tcggccggtc
      241 ggtcttggtc gccgtgctgg agttgctggc gaagtagcca ttggctggct cgaaggcact
      301 gcgctcggca ctggcctcga tgtcggtgtc ttccagctgc aggctcgaac cgctcttgct
      361 cggcaggact acgtagccgg tcggcgtctt gtgcgcgacc aggccgctgc cggcgagcag
      421 ggcggtcagg ccgtcttcca gcgaaccgcc accggccagg ccggggctgc gcaggtcacg
      481 cacctggtcc ggcgagtagg agagggtgat cccggcgcgc tcggcgaagg tgctcagcgc
      541 ctggcccagt ggccctgccg ggatgctcgg tgcggctgct gctggtgccg gctcggcggc
      601 atgcgccggc aggctgacca ggccggcgtt gagcgtcagt gccaggcaga tggcggcagg
      661 cagggagcgg gggcggaagg gcaatggtgc gaagctggca gagcgcatga cggtgtccat
      721 tgagggagtg atcccctcaa accggatgaa gcggaaaagt ccgacaaaaa aattcgcgat
      781 cggcgattcg ccctaggccg gcaccacgcg tacccaccag cgggtacgct cgaccactcg
      841 caccggcagc aggtagctga tgttggtcag catcgccgca ggttcgtcga ggtggaacac
      901 gccggacagg cgcaggtcgg ctaccgccgg ctcgcagccc agccagccct ggcgataacg
      961 cgcggcctcg gcgaggaaat cggccaggcg gatgtcgttg accaccagca ggccgcgggt
     1021 ccagccgaac gggtcgagcg ggcccttgcc cagctcgtgt gtgcctgcag ccgagacggc
     1081 caggccctgg ccggcctgca gtcgctgctc gccgcgggcg ctgctgacca gtgcctcgcc
     1141 gcgctgcacg cggatttcgc tgtagtcgtc atgctcgcgc agcagcacgc tggcctcgcg
     1201 cccgctgcag cgggcgaagc gacagcgcgc gcgccagtcg ctgccttgca ccagcacttc
     1261 gccgccgcgc aggcgcagct cgccattcac catatccagc gagctgccgg tattgagcag
     1321 cgcctcggca tcgcccggca gcgccacctg gcggcgctcg ccggtgcggg tggcgaagtc
     1381 ggcgtgccag gtgcgcggca cctgggtggc cagcaggccg ctgccaccga cggccaggcc
     1441 gaggccgagc agcttgaggg tacgacggcg gcccaggtcg gcctcggccc gttgcagcag
     1501 gggaatgacc tgcgcggcag gcaactggcc gggctggaac agcccgccca tctgctgcag
     1561 acgttgccag gccagctggt ggcgcgggtc gtggtgcagc cagtcctgcc attgccgctg
     1621 cagctcgggg ttgccggcgc ccgcgcgcag gcgcagctgc cagtcgatgg ccacgcggac
     1681 gatggcctcg ggaagggccg gcaggcgctc gccgcggttc acgccgaggc ctcgaaacag
     1741 gcgcggtagc agtgcagcag ggcactggcc acgtggcgct cgacggtgcg actggagacg
     1801 cccagctgct ccgccacctg ggcatggttc aggccgccga gctgatacag caggaaggcc
     1861 tcgcgcacct tgggcttgag gccgtcgagc agctgggcga tgcgctccag gcactgcaac
     1921 gcctcgtggc ggacttccgg cgagggatgg ctggcctcgg gcagctgcgc cagcgcttcg
     1981 aggtaggcgc gctccagcgc gttgcgccgc cagtggtcga tcaccaggcc acgggcgatg
     2041 cggaccagca gggcacgtgg cgcctgatcg ctgaccggct tgttgcgcac cagcaggcgc
     2101 acgaaggtgt cctgtgccag gtccgccgcc tgctgcgagc agccgaccga gcgccgcagc
     2161 cagccctgca gccagccgtg atgcgcgccg tacagccggt cgagcgagac gaaggactct
     2221 tcatgtggcg gcatggcgcg ctccgaagcg agaggcatca gcgccatgca gggcatggcg
     2281 gaagcgcgca cattattcgc gaatcattcg catttcaact gtttgattac ctcgccgccg
     2341 accggtgcgg ttcccgcgca cggccgtgta gctccaccag ccatccgacc gacaggccgg
     2401 ttgcggccca tccgcctggg ctgaaacgac ctatcctcga acgactgagg tgcgaatgac
     2461 gggtcgaaca gaggaggcag gaatggatag attcaccggc ggttgcctgt gtggtgatgt
     2521 gcggttcgtg gtgtcaggcc ggccgtaccg ggtcggcctc tgccac
//
LOCUS       DATIHC010000588         2753 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_6407, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000588 DATIHC010000000
VERSION     DATIHC010000588.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2753
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6407"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..235
                     /locus_tag="VLF16_09730"
     CDS             <1..235
                     /locus_tag="VLF16_09730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009407330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSX71203.1"
                     /translation="AHAGKLNLTHRSLSMWVGDREMPQEIQDVRSLQLRLEQLSQYGL
                     RSDFQLEHGEDHMSIPFRVTTRVLEELLSTRRF"
     gene            complement(280..1041)
                     /locus_tag="VLF16_09735"
     CDS             complement(280..1041)
                     /locus_tag="VLF16_09735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013714397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSX71204.1"
                     /translation="MNLQAIKSIYLFELHRTWRTLLQSIATPVISTSLYFVVFGSAIG
                     SSMTEVHGVSYGAFIVPGLIMLALLTESIGNASFGIYMPKYSGTIYELLSAPVSFFEI
                     LVGYVGAAATKSVVLGLIIFATSRLFVDFEVAHPFWVLAFLVLTAITFCLFGFIIGVW
                     ADGWEKLQIVPALIVTPLAFLGGSFYSISMLPELWQKLTLFNPVVYLISAFRWAFFGV
                     ADVNLALSVGMILGFLLACVLVVSWIFKTGYRLRQ"
     gene            complement(1038..1970)
                     /locus_tag="VLF16_09740"
     CDS             complement(1038..1970)
                     /locus_tag="VLF16_09740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003294066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSX71205.1"
                     /translation="MESVISVENLSKTYKSGHPALSNINLDIHKGEIFALLGPNGAGK
                     TTLISIICGIVNPGEGRVRVAGHDIKSDYRAARSAIGLVPQELVNDVFETVWATVKFS
                     RGLFGKKPDPRYLEQVLKDLSLWDKRDAKIFELSGGMKRRVMIAKALSHEPSILFLDE
                     PTAGVDVELRRDMWNMVRRLRERGVTIILTTHYIEEAEEMADRIGVIRKGEIILVEDK
                     DVLMHKLGKKQLTVQLKHPLASVPAELAGHGLELADEGHALVYTFDAQREHTGIAELL
                     KDMAQHGIDFKDLQSSESSLEDIFVSLVHEKERA"
     gene            complement(2099..2623)
                     /locus_tag="VLF16_09745"
     CDS             complement(2099..2623)
                     /locus_tag="VLF16_09745"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HSX71206.1"
                     /translation="MTILIVVVLLIAGLAVFVASRPDEFRVQRSALIQAPPAALFAQV
                     NDFRQWPHWSPWARRDPAMRVEYEGAEQGVGAVQHWAGNKQVGKGSATILESVPGERV
                     LIQLEFLEPFRASNLAEFSFQPEASGTRVNWSMTGRNGFVGKAMGLVFDMDKMVGGDF
                     EQGLQQLRMRVEES"
BASE COUNT          467 a          919 c          895 g          472 t
ORIGIN      
        1 ggcacacgcc ggcaagctga atctgaccca tcgcagcctg tcgatgtggg tcggcgaccg
       61 cgagatgccg caggagatcc aggacgtgcg ctcgctgcag ctgcgcctgg agcagctgtc
      121 gcagtacggg ctgcgcagcg acttccagct cgaacacggc gaggaccaca tgtcgatccc
      181 cttccgcgtc accacccggg ttctggaaga gctgctcagc acccggcgct tctgaccccg
      241 cgcttcacgg ctgccacccg gcagccgtgc cttccggcgt cactggcgca gccggtagcc
      301 ggtcttgaag atccagctca ccaccagcac gcaggccagc aggaagccga ggatcatgcc
      361 cacgctgagg gcgaggttga cgtcggccac gccgaagaag gcccagcgga aggcgctgat
      421 caggtacacc accgggttga acagggtcag tttctgccac agctccggca gcatgctgat
      481 cgagtagaag ctgccaccga ggaaggccag cggcgtgacg atcagcgccg gcacgatctg
      541 cagtttctcc cagccatcgg cccacacgcc gatgatgaag ccgaacaggc agaaggtgat
      601 cgccgtcagc accaggaacg ccagcaccca gaacgggtgg gccacctcga aatcgacgaa
      661 cagccgcgag gtggcgaaga tgatcaggcc gagcaccacc gacttggtcg ccgccgcgcc
      721 gacatagccg accaggatct cgaagaacga caccggcgcc gacagcagct cgtagatggt
      781 ccccgagtac ttgggcatgt agatgccgaa cgatgcgttg ccgatgctct cggtgagcag
      841 cgccagcatg atcagaccgg ggacgatgaa ggcgccgtag ctgacgccgt gcacctcggt
      901 catgctcgag ccgatggccg agccgaacac cacgaagtac agcgaggtgc tgatcaccgg
      961 ggtggcgatg ctctgcagca gggtgcgcca ggtgcggtgc agctcgaaca ggtagatgga
     1021 cttgatggct tgcaggttca tgcgcgctcc ttctcgtgca ccaggctgac gaagatgtct
     1081 tccagcgagc tctcgctgga ctgcaggtcc ttgaagtcga tgccgtgctg ggccatgtcc
     1141 ttgagcagct cggcgatgcc ggtgtgctcg cgctgggcat cgaaggtgta gaccagcgcg
     1201 tggccctcgt cggccagctc caggccgtgg ccggccagct ccgcgggcac gctcgccagc
     1261 gggtgcttga gctgcacggt gagctgcttc ttgccgagct tgtgcatcag cacgtccttg
     1321 tcctccacca ggatgatctc gcccttgcgg atcaccccga tgcggtcggc catctcctcg
     1381 gcctcctcga tgtagtgggt ggtgaggatg atggtcacgc cgcgctcgcg caggcgccgc
     1441 accatgttcc acatgtcgcg gcgcagctcc acgtccacgc cggcggtggg ctcgtcgagg
     1501 aacaggatcg acggctcgtg ggagagcgcc ttggcgatca tcacccggcg cttcatgccg
     1561 ccggacaact cgaagatctt ggcgtcgcgc ttgtcccaca gcgagaggtc cttgagcacc
     1621 tgctccaggt accgcgggtc gggcttcttg ccgaacaggc cgcggctgaa cttgactgtg
     1681 gcccagaccg tttcgaacac gtcgttgacc agctcctgag gcaccaggcc gatggccgaa
     1741 cgcgcggcgc ggtagtcgga cttgatgtcg tggccggcga cccgcaccct gccctcgccc
     1801 ggattgacga tgccgcagat gatgctgatc agggtggtct tgccggcgcc gttggggccc
     1861 agcagggcga agatctcgcc cttgtggatg tccaggttga tgttgctcag ggccggatgg
     1921 ccggacttgt aggtcttgct caggttctcg acggaaatca ccgattccac ggttgctcct
     1981 tagccaggca gtcaaaacag gagccatgtc cccatcgctt cgctcgcgcg cttcagcgct
     2041 gtgtggagcg gcgcgtacgg ctcgggacat cagccgatca ggggcgattg tacgccgatc
     2101 agctctcctc cacgcgcatg cgcaactgtt gcaggccctg ttcgaagtcg ccgccgacca
     2161 ttttgtccat gtcgaacacc agccccatgg ccttgccgac gaagccgttg cggccggtca
     2221 tgctccagtt cacccgcgtg ccgctggcct ccggctggaa gctgaactcg gccaggttgc
     2281 tggcgcggaa gggctcgagg aactccagct ggatcagcac ccgctcgccc ggcacgctct
     2341 cgaggatggt cgcgctgccc ttgcccacct gcttgttgcc ggcccagtgc tggaccgcgc
     2401 ccacgccctg ttcggcgccc tcgtactcca cgcgcatggc cgggtcgcgc cgggcccagg
     2461 gcgaccagtg cggccactgg cggaaatcgt tgacctgagc gaacagcgcc gccggcggcg
     2521 cctggatcag tgccgagcgc tgcacccgga actcatccgg gcggctggcg acgaacaccg
     2581 ccaggccggc gatcagcagt acgacgacga tcagaatggt catgcgcttc tttccttgca
     2641 ttgtggttgt ctcccgctcc tctcccgcgc atgggcggga ggtgtcagct cagtggcagc
     2701 cctcgcccgg tagcccggat gacctgctcc ctctcccgtt cacgggagag ggc
//
LOCUS       DATIHC010000589         2462 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17150, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000589 DATIHC010000000
VERSION     DATIHC010000589.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2462)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2462
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17150"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1623
                     /locus_tag="VLF16_09750"
     CDS             <1..1623
                     /locus_tag="VLF16_09750"
                     /EC_number="2.7.7.65"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020292482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA];
                     GO_function: GO:0071111 - cyclic-guanylate-specific
                     phosphodiesterase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional diguanylate
                     cyclase/phosphodiesterase"
                     /protein_id="HSX71207.1"
                     /translation="EVSGRLSQFGAEGGEYQSLFRRVAPRGFSVTVSQRTEEILSSSR
                     LTYGRQLWLNLSMTLLILCGLVWTWRVLGKRQEAFSALEQAQQVNQQLIQRLEEEHRR
                     SSHAAATDHLSGLHNRRQFMEVAGRALAEQRGRRRLMAILFIDMDRFKSINDSLGHKV
                     GDLLLQAVAGRISRALEPGDEAARFGGDEFVVLLAGERSEEQIDAWVRALVKKLSAPY
                     ALDEHELNTSPSVGVSICPRDGQAVDELIRCADAAMYSAKQAGRGQYRFFDPSLNTVD
                     IAEFALEQAFGMALKERQFVLHYQPQIRLDSMRVEGYEALVRWHHPEFGLLYPDRFIS
                     LAERSGFIVALGWEVLRLACEELARWQVQGVQACLAVNVSPLQLRQADFSERLLDELR
                     RHGVEPRRLELEITETTVLDHEGQGIEHLRRLREAGLGVGLDDFGQGYAGFSHLQSLP
                     LNRLKIDRSLIAQLSNSHDDSPIVSSTIILAKRLGLEVVAEGVETREQVVYLRLAGCD
                     FAQGYHFSRPLTAAQLREYPPFIDSVTIACEQ"
     gene            1620..>2462
                     /locus_tag="VLF16_09755"
     CDS             1620..>2462
                     /locus_tag="VLF16_09755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020292481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate/phosphite/phosphonate ABC transporter
                     substrate-binding protein"
                     /protein_id="HSX71208.1"
                     /translation="MKLLAGALLALGITGAAQAQCTQSSLRIAVIPKKSMDVLMREYR
                     PLLQRLGTALNMPAHIVPASSYESVIDAIVSGGVDIAWLGPASYMLAHRRDPRVEPFA
                     SLTIGQGHFTPAGHHYQALLLAPRAVAADLQALRGKRGALSDPASTSGSVVPNAEFSA
                     QVGMPLSQFFGSVVYSGSHDKSLDALLEGRVDAAFVASVRADAYLDSGRISRDTFNVL
                     WRSERIYYDPYVFSGGLCDEYKARIRRAMLENQEGLAEFFASQGATGLAPVSHAEYAP
                     LLRMM"
BASE COUNT          372 a          896 c          828 g          366 t
ORIGIN      
        1 gaggtgtccg gccggctcag ccagttcggc gccgaaggcg gcgaatacca gagcctgttc
       61 cgccgggtgg cgccgcgcgg cttcagcgtc acagtgagcc agcggacgga ggagatcctg
      121 agctcgtcgc ggctcaccta cggccgccag ctgtggctga acctgagcat gaccctgctg
      181 atcctctgcg gtctggtgtg gacctggcgc gtgctgggca agcgccagga ggcgttcagc
      241 gccctcgagc aggcgcagca ggtcaaccag cagctcatcc agcggctgga ggaagagcac
      301 cggcgcagca gccatgccgc cgccaccgac catttgagcg gcctgcacaa ccgccgccag
      361 ttcatggaag tggccgggcg ggccctggcc gagcagcgcg gccggcgccg gctgatggcg
      421 atcctgttca tcgacatgga ccgcttcaag tcgatcaacg actccctcgg ccacaaggtc
      481 ggcgacctgc tcctgcaggc cgtggccggg cgcatcagcc gcgcgctgga gccgggcgac
      541 gaggcggcgc gtttcggcgg cgacgagttc gtcgtgctgc tggccggcga gcgcagcgag
      601 gagcagatcg acgcctgggt gcgcgcgctg gtgaagaaac tctcggcgcc ctacgcgctg
      661 gacgagcacg agctgaacac cagccccagc gtgggcgtga gcatctgccc gcgcgacggc
      721 caggctgtgg acgagctgat ccgctgcgcc gacgccgcca tgtactcggc caagcaggcc
      781 ggacgcggcc agtaccgctt cttcgacccc tcgctgaaca ccgtggacat cgccgaattc
      841 gccctcgagc aggccttcgg catggccctc aaggagcgcc agttcgtcct tcactaccag
      901 ccgcagatcc gcctcgactc gatgcgcgtg gagggctacg aggcgctggt gcgctggcac
      961 cacccggagt tcggcctgct ctacccggac cgcttcatct ccctggccga gcgcagcggc
     1021 ttcatcgtcg ccctcggctg ggaggtgctg cgcctggcct gcgaggaact ggcgcgctgg
     1081 caggtgcagg gcgtgcaggc ctgcctggcg gtgaacgtgt cgccgctgca gctgcgccag
     1141 gccgacttca gcgagcgcct gctcgacgag ctgcgccgcc atggtgtgga gccgcggcgc
     1201 ctggagctgg agatcaccga gaccacggtg ctggaccacg aggggcaggg catcgagcac
     1261 ctgcgccggc tgcgcgaggc cggcctgggc gtcggcctcg acgacttcgg ccagggctac
     1321 gccggctttt cgcacctgca gtcgctgccg ctcaaccgcc tgaagatcga ccgctcgctg
     1381 atcgcccagc tgtccaacag ccacgacgac agccccatcg tctcgtccac catcatcctg
     1441 gccaagcgcc tgggcctgga ggtggtggcc gagggcgtgg agacccgcga gcaggtcgtc
     1501 tacctgcgcc tggccggctg cgacttcgcc cagggctacc atttcagccg cccgctgacc
     1561 gcggcacagc tgcgcgaata ccctcccttc atcgattcgg taaccatcgc atgcgagcaa
     1621 tgaagctact ggccggcgcg ctgctggccc tcggcatcac cggcgcggcc caggcccaat
     1681 gcacccagag cagcctgcgc atcgccgtga tcccgaagaa gagcatggac gtgctgatgc
     1741 gcgagtaccg gccgctgctg cagcgtctgg gcacggcgct gaacatgccg gcgcacatcg
     1801 tgccggcgtc gtcctacgag agcgtgatcg atgccatcgt ctccggcggc gtggacatcg
     1861 cctggctcgg cccggcctcc tacatgctgg cccaccggcg cgacccgcgc gtcgaaccct
     1921 tcgccagcct gaccatcggc cagggccact tcaccccggc cgggcaccac taccaggcgc
     1981 tgctgctggc gccccgcgcc gtcgccgccg atctgcaggc gctgcgcggc aagcgcggcg
     2041 cgctgagcga cccggccagc acctccggca gcgtggtgcc caacgccgag ttctccgcgc
     2101 aggtcggcat gccgctgtcg cagttcttcg gctcggtggt ctactccggc tcccacgaca
     2161 aatcgctgga cgcattgctg gagggccggg tggacgccgc gttcgtcgcc agcgtacgcg
     2221 ccgacgccta cctcgacagc ggccgcatca gccgcgacac cttcaacgtg ctgtggcgct
     2281 ccgagcgcat ctactacgac ccctacgtgt tcagcggtgg cctgtgcgac gagtacaagg
     2341 cgcgcatccg ccgcgccatg ctcgagaacc aggaaggcct cgccgaattc ttcgcctccc
     2401 agggcgccac cggcctggcg ccggtcagcc atgccgagta cgcgccgctg ctacggatga
     2461 tg
//
LOCUS       DATIHC010000590         3214 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10938, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000590 DATIHC010000000
VERSION     DATIHC010000590.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3214
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10938"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..726
                     /locus_tag="VLF16_09760"
     CDS             <1..726
                     /locus_tag="VLF16_09760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSX71209.1"
                     /translation="EAKAAQLAAEAALDKARIDLRYTKVLAPIAGRVGRSAVTEGALV
                     NNGQANALATIQQLDPIYVDVTQPITDLLSLRRDLASGRLEKAGDNAAKVQLKLEDGS
                     EYEHPGTLEFTEVSVDEGTGSVVLRAMFPNPDHLLLPGMFVHAQLSSAVDRKAILAPQ
                     QGVTRDTKGQATALVVGEGNKVELRKLRAERTAGSRWLVSEGLKPGDRLITEGLQFIK
                     PGDEVIPGEAGNVAASKDLAQSR"
     gene            736..>3214
                     /locus_tag="VLF16_09765"
     CDS             736..>3214
                     /locus_tag="VLF16_09765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSX71210.1"
                     /translation="MSKFFIDRPIFAWVIALVIMLAGGLSVLKLPINQYPSIAPPAVG
                     IQVSYPGASAQTVQDTVVQVIEQQLNGIDGLRYISSESNSDGSMSITATFEQGTNPDI
                     AQVQVQNKLQLATPLLPQEVQQQGIRVTKAVKNFLLVIGVVSTNGNQTREDLSNYIVS
                     NLQDPISRTKGVGDFQVFGAQYAMRIWLDPAKLNNFKLTPVDVKSAIQAQNVQVSSGQ
                     FGGLPAAPGNQLNATIIGKTRLQTPEEFRDILLKVDRDGSQVRLGDVAKVELGGENYA
                     INAQFNGMPASGLAIKLATGANALDTAKAVRATIANLEPFFPDGMEVVFPYDTTPVIS
                     ASIEGVVHTLFEAIGLVFLVMFLFLQNFRATIIPTLAVPVVLLGTFGVLAAFGFSINT
                     LTMFAMVLAIGLLVDDAIVVVENVERVMREDGLSPKEATRKSMGQIQGALVGIALVLS
                     AVFLPMAFFGGSTGVIYKQFSITIVSAMTLSVLVALIFTPALCATLLKPIDGVHHEAK
                     RGFFGWFNRTFDRGSNAYQRGVSAMLRRKAPYLLLYLVIVGIMVWMFTRIPTAFLPEE
                     DQGVLFAQVQTPAGSSAERTQAVVDDMRQYLLEDEASTVKSVFTVTGFNFAGRGQSSG
                     MAFIMLKPWGDRPGEENGVAALAQRAQQHFFSFRDAMVFAFAPPAVMELGNATGFNLF
                     LQDQAGVGHEVLNQARDKFLQLANEHPVLDSVRANGLRDEPQYQLLIDDERARALGLS
                     LAEINSTLSIAWGASYVNDFIDHGRVKKVYLQGRPESRMSPEDLNKWYVRNDQGQMVP
                     FSAFASGEWTYGPPKLSRYNGVSAVEIL"
BASE COUNT          548 a         1117 c         1050 g          499 t
ORIGIN      
        1 gaggccaagg ccgcgcagct tgcggcggag gcggcgctgg acaaggcgcg catcgatctg
       61 cgttacacca aggtgctggc gcccatcgcc ggccgtgtcg gtcgctcggc cgtcaccgag
      121 ggcgcgctgg tcaacaacgg ccaggccaac gccctggcga ccatccagca gctcgacccg
      181 atctatgtcg acgtcaccca gccgatcacc gacctgctga gcctgcgccg cgacctggcc
      241 agcggccgct tggagaaggc cggcgacaac gccgccaagg tccagctgaa gctggaggac
      301 ggcagcgagt acgagcaccc gggcaccctg gaattcaccg aggtgtcggt ggacgagggc
      361 accggctcgg tggtgctgcg cgccatgttc cccaaccccg atcacctgct gctgccgggc
      421 atgttcgtgc atgcgcaact cagctcggcg gtggaccgta aggccatcct cgcgccgcag
      481 cagggcgtga cccgcgacac caagggccag gccaccgcgc tggtggtggg cgagggcaac
      541 aaggtcgagc tgcgcaagct gcgcgccgag cgcaccgccg gcagccgctg gctggtgagc
      601 gagggcctga agccgggcga ccggctgatc accgagggcc tgcagttcat caagccgggc
      661 gacgaagtga ttccgggcga ggcgggcaat gtcgccgcct cgaaagacct ggcccagagc
      721 cgctaaggag cgcgtatgtc gaagttcttc atcgacaggc cgatcttcgc ctgggtgatc
      781 gcgctggtga tcatgctggc cggcggtctg tccgtcctca aactgccgat caaccagtac
      841 ccgagcatcg ccccgcccgc ggtcggcatc caagtgtcct atccgggcgc ctcggcgcag
      901 acggtgcagg acaccgtggt gcaggtgatc gagcagcagc tcaacggcat cgacggcctg
      961 cgctacatca gctcggagag caactccgac ggcagcatga gcatcaccgc caccttcgag
     1021 cagggcacca acccggacat cgcccaggtg caggtgcaga acaagctgca gctggccacg
     1081 ccgctgctgc cccaggaggt ccagcagcag ggcatccgcg tgaccaaggc ggtgaagaac
     1141 ttcctgctgg tcatcggcgt ggtgtcgacc aacggcaacc agacccgcga ggacctgtcc
     1201 aactacatcg tctccaacct gcaggacccg atctcgcgga ccaagggcgt gggcgacttc
     1261 caggtgttcg gcgcgcagta cgccatgcgc atctggctcg atccggcgaa gctgaacaac
     1321 ttcaagctca ccccggtcga cgtgaagagc gcgatccagg cgcagaacgt gcaggtgtcc
     1381 tccggccagt tcggcggcct gccggccgcg ccgggcaacc agctcaacgc caccatcatc
     1441 ggcaagaccc gcctgcagac gccggaagag ttccgcgaca tcctgctcaa ggtcgaccgc
     1501 gacggctccc aggtgcgcct gggcgatgta gccaaggtcg agctgggcgg cgagaactac
     1561 gcgatcaacg cccagttcaa cggcatgccg gcctccggcc tggcgatcaa gctggccacc
     1621 ggcgccaacg cgctggacac cgccaaggcg gtgcgcgcga ccatcgccaa cctcgagccg
     1681 ttcttcccgg atggcatgga agtggtgttc ccctacgaca ccacgccggt gatctccgcc
     1741 tccatcgagg gtgtggtgca caccctgttc gaggccatcg gcctggtgtt cctggtgatg
     1801 ttcctgttcc tgcagaactt ccgggccacc atcatcccca ccctggcggt gccggtggtg
     1861 ctgctcggca ccttcggcgt gctggcggcc ttcggcttct ccatcaacac cctgaccatg
     1921 ttcgccatgg tcctggccat cggcctcctg gtggacgacg ccatcgtggt ggtggagaac
     1981 gtcgagcggg tgatgcgcga ggacgggctg tcgcccaagg aggcgacacg caagtccatg
     2041 ggccagatcc agggcgcgct ggtgggcatc gccctggtgc tgtcggcggt gttcctgccg
     2101 atggccttct tcggcggctc caccggggtc atctacaagc agttctccat caccatcgtc
     2161 tcggccatga ccctgtcggt gctggtggcg ctgatcttca ccccggccct gtgcgccacg
     2221 ctgctcaagc ccatcgacgg cgtccaccac gaggccaagc gcggcttctt cggctggttc
     2281 aaccgcacct tcgaccgcgg cagcaacgcc taccagcgcg gcgtgtcggc catgctccgg
     2341 cgcaaggcac cgtacctgct gctgtacctg gtgattgtcg gcatcatggt gtggatgttc
     2401 acccgcatcc ccaccgcgtt cctcccggaa gaggatcagg gcgtgctgtt cgcccaggtg
     2461 cagactccgg ccggctccag tgccgagcgc acccaggcgg tggtcgacga catgcgccag
     2521 tacctgctcg aggacgaggc cagcacggtc aagtcggtgt tcaccgtcac cggcttcaac
     2581 ttcgccggcc gcggccagag ctcgggcatg gccttcatca tgctcaagcc ctggggcgac
     2641 cgtccgggcg aagagaacgg cgtggccgcc ctggcgcagc gcgcgcagca gcacttcttc
     2701 agcttccgcg acgccatggt gttcgccttc gccccgccgg cggtgatgga gttgggcaac
     2761 gccaccggct tcaacctgtt cctgcaggac caagccggcg tcggccacga ggtgctcaac
     2821 caggcccgcg acaagttcct gcagctggcc aacgagcatc cggtgctcga cagcgtgcgg
     2881 gccaacggcc tgcgcgacga gccgcagtac cagttgctga tcgacgacga gcgcgcccgc
     2941 gccctcggcc tgtcgctggc ggagatcaac agcaccctgt cgatcgcctg gggcgccagc
     3001 tacgtcaacg acttcatcga ccacggccgg gtgaagaagg tgtacctgca gggccggccg
     3061 gaatcgcgca tgagcccgga agacctgaac aagtggtacg tgcgcaacga ccagggccag
     3121 atggtgccgt tcagtgcctt cgccagcggc gagtggacct acggcccgcc caagctgtcg
     3181 cgctacaacg gcgtgtcggc ggtggagatc ctcg
//
LOCUS       DATIHC010000591         3443 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_6415, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000591 DATIHC010000000
VERSION     DATIHC010000591.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3443)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3443)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3443
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6415"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            230..2842
                     /gene="leuS"
                     /locus_tag="VLF16_09770"
     CDS             230..2842
                     /gene="leuS"
                     /locus_tag="VLF16_09770"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HSX71211.1"
                     /translation="MHEQYSPREIEAAAQAHWDAQKSFVVSEQPGKDTFYCLSMFPYP
                     SGKLHMGHVRNYTIGDVIARYQRMQGKNVLQPMGWDAFGMPAENAAMKNNVAPAKWTY
                     ENIAYMKSQLKSLGLAIDWTREVTTCKPDYYRWEQWLFTRLFEKGVIYRKNGTVNWDP
                     VDQTVLANEQVIDGRGWRSGALIEKREIPMYYFKITAYAEELLSSLDELDGWPEQVKT
                     MQRNWIGKSFGADIAFDYDVDSIGTAGQLKVYSTRPDTLMGATYVAVAAEHPLAQRAA
                     ENNAELQAFIAECKAGSVAEADMATMEKKGLATGQFVLHPLTGDKLPVFVANYVLWGY
                     GEGAVMAVPAHDERDFEFANKYGLPIQQVYAGEGKDYDANQWQAWYGDKDGLTTLNSG
                     KYDGKGFTEAFDAIVADLEASGHGARKTQFRLRDWGISRQRYWGCPIPIIHCPSCGDV
                     PVPEDQLPVVLPEDVVPDGAGSPLAKMPEFYACSCPKCGSAAKRETDTMDTFVESSWY
                     FARYASPNYEGGMVDPQAANHWLPVDQYIGGIEHAILHLLYARFFHKLMRDEGLVSSN
                     EPFKNLLTQGMVVAETYYRTLENGGKDWFNPADVEVERDAKAKVIGARLKSDGLAVEI
                     GGTEKMSKSKNNGVDPQAMIDAYGADTCRLFMMFASPPDMSCEWSDAGIEGANRFLRR
                     VWRLAHGHVSAGLPGELDKSSLNDEQKAVRRAIHLAIKQASNDVGQNHKFNTAIAQVM
                     TLMNVLEKAATASEQDRALLQEGLEAVALLLAPITPHICHELWQRLGKAGAVIDAQWP
                     QVDESALVQDSLTLVIQVNGKLRGQIEVPASASREDVEAAARANENVQRFTEGVTIRK
                     VIVVPGKLVNIVAN"
     gene            2903..>3443
                     /gene="lptE"
                     /locus_tag="VLF16_09775"
     CDS             2903..>3443
                     /gene="lptE"
                     /locus_tag="VLF16_09775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008569655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0043165 - Gram-negative-bacterium-type cell
                     outer membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HSX71212.1"
                     /translation="MMKRNMLVIGLAVLLSACGFQLRGTGSAEFALKEIDLQARNAYG
                     DTVKQLRQLLENSDVKVHNGAPYLLLLANEQETQRTASVTSSARSAEYELTTHLDYEI
                     RGEKNMLLLRDKLEVQRVYVHDENNLIGSSQESAQLRQEMRRELIQQVSLRLQLLTPA
                     RLEQLQQEAEARAAAEAEAA"
BASE COUNT          704 a         1190 c         1066 g          483 t
ORIGIN      
        1 cgtagagccc accctcgatc tcagcccgcc gcaactctgc catccctcac ctcgaccggg
       61 cgcccaaccc tgactgcgcg cctctcacag gcaagcttag cgccggccgc agccgcaacc
      121 ggacgccgcg acaaacggcg gcgcggcaca atcagggttt ccctgaatcg aggggggtca
      181 tgtatgctac ggcgcttctc gcaagccctc atttcagcgc cgaaagccca tgcacgaaca
      241 gtattcgccc cgtgaaatcg aagccgccgc ccaagctcat tgggacgcgc aaaagtcctt
      301 tgtcgtgagc gagcagccgg gcaaggacac cttctattgc ctgtccatgt tcccctaccc
      361 gagcggcaag ctgcacatgg gccacgtgcg caactacacc atcggtgacg tgatcgcccg
      421 ctaccagcgc atgcagggca agaacgtgct gcaaccgatg ggctgggacg ccttcggcat
      481 gccggccgaa aacgcggcga tgaagaacaa cgtcgccccg gccaagtgga cctacgagaa
      541 catcgcctac atgaagtccc agctgaaatc gctgggcctg gccatcgact ggacccgcga
      601 agtcaccacc tgcaagccgg actactaccg ctgggagcag tggctgttca cccgcctgtt
      661 cgagaagggc gtgatctacc gcaagaacgg caccgtgaac tgggacccgg tcgaccagac
      721 cgtgctggcc aacgagcagg tcatcgacgg ccgcggctgg cgctcgggcg ctctgatcga
      781 gaagcgcgaa atcccaatgt actacttcaa gatcaccgcc tacgccgagg agctgctgag
      841 cagcctggac gagctggatg gctggcccga gcaggtcaag accatgcagc gcaactggat
      901 cggtaagagc ttcggtgccg acatcgcgtt cgactacgac gtcgacagca tcggcaccgc
      961 cggccagctc aaggtctact cgacccgccc cgacaccctg atgggcgcca cctacgtggc
     1021 cgtggccgcc gagcacccgc tggcccagcg cgccgccgag aacaacgccg agctgcaggc
     1081 attcatcgcc gagtgcaagg caggatcggt tgccgaggcc gatatggcca ccatggagaa
     1141 gaagggcctg gccaccggcc agttcgtcct ccatccgctg accggcgaca agctgccggt
     1201 attcgtcgcc aactacgtgc tgtggggcta cggcgaaggc gccgtgatgg ccgtgccggc
     1261 gcatgacgag cgcgacttcg aattcgccaa caagtacggc ctgccgatcc agcaggtcta
     1321 cgccggcgaa ggcaaggact acgacgccaa ccaatggcag gcctggtatg gcgacaagga
     1381 cggcctgacc accctgaatt ccggcaagta cgacggcaag ggttttaccg aggccttcga
     1441 cgccatcgtc gccgacctgg aagccagcgg ccacggcgcg cgcaagaccc agttccgcct
     1501 gcgcgactgg ggcatcagcc gccagcgcta ctggggctgc ccgatcccga ttatccattg
     1561 cccgagctgc ggtgacgtgc cggtgccgga agaccagctt ccggtcgtcc tgcccgaaga
     1621 cgtggtaccg gacggcgccg gttcgccgct ggccaagatg cccgagttct acgcctgcag
     1681 ctgcccgaaa tgcggcagcg cagccaagcg tgaaaccgac accatggaca ccttcgtcga
     1741 gtcgtcctgg tacttcgccc gctacgccag cccgaactac gagggcggca tggtcgaccc
     1801 gcaggccgcc aaccactggc tgccggtgga ccagtacatc ggcggcatcg aacacgccat
     1861 cctgcacctg ctgtacgcac gcttcttcca caagctgatg cgtgacgaag gcctggtgtc
     1921 ctccaacgag ccgttcaaga acctgctgac ccagggcatg gtggtcgccg agacctacta
     1981 ccgcaccctg gaaaatggcg gtaaggactg gttcaacccg gccgacgtgg aagtcgagcg
     2041 cgacgccaag gccaaggtca tcggcgctag gctgaagagc gacggcctgg ccgtggaaat
     2101 cggcggcacc gagaagatgt ccaagtcgaa gaacaacggc gtggacccgc aggccatgat
     2161 cgacgcctac ggcgccgaca cctgccgcct gttcatgatg ttcgcctcgc cgcccgacat
     2221 gagctgcgaa tggtccgacg ccggcatcga aggcgccaac cgcttcctgc gccgcgtctg
     2281 gcgcctggcc cacggccatg tcagcgccgg cctgccgggc gaactcgaca agagcagcct
     2341 gaacgacgag cagaaggccg tgcgccgcgc catccacctg gccatcaagc aggccagcaa
     2401 cgatgtcggc cagaatcaca agttcaacac cgccatcgcc caggtgatga ccctgatgaa
     2461 cgtgctggag aaggccgcga ccgccagcga gcaggaccgc gcgctgctgc aggaaggcct
     2521 ggaggccgtg gccctgctgc tggcgccgat caccccgcac atctgccacg aactgtggca
     2581 gcggctgggc aaggccggtg ccgtcatcga cgcgcagtgg ccgcaggtcg acgaatcggc
     2641 actggtgcag gacagcctga ccctggtcat ccaggtcaac ggcaagctgc gcggccagat
     2701 cgaagtgccg gcgtcggcct ctcgcgagga cgtcgaggcc gccgcccgcg ccaacgagaa
     2761 cgtgcagcgc ttcaccgagg gcgtgaccat ccgcaaggtc atcgtcgtgc cgggcaagct
     2821 ggtcaacatc gtcgccaact aaacggtcgc caactgattc agcccggtgc ccaggcgcag
     2881 ggtttctcaa ggggaaacaa caatgatgaa acggaacatg ctggtcatcg gcctcgccgt
     2941 cctgctcagc gcctgcggct tccagctgcg tggcaccggc agcgccgagt tcgccctcaa
     3001 ggaaatcgac ctgcaggcgc gcaatgccta cggcgacacc gtcaagcagc tgcgccagct
     3061 gctggaaaac agcgacgtga aggtgcacaa cggcgcgccc tacctgctgc tcctggccaa
     3121 cgagcaggaa acccagcgca ccgccagcgt caccagcagc gcgcgcagcg ccgagtacga
     3181 gttgaccacc cacctggact acgagatccg cggcgagaag aacatgctgt tgctgcgcga
     3241 caagctggaa gtgcagcgcg tctacgtcca cgacgagaac aacctgatcg gttccagtca
     3301 ggaatccgcc cagctgcgcc aggaaatgcg ccgcgaactg atccagcagg tgtccctgcg
     3361 cctgcaactg ctgaccccgg cgcgcctgga gcagctgcag caggaggccg aggcccgcgc
     3421 cgccgccgag gccgaagcgg ccg
//
LOCUS       DATIHC010000592         2181 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13194, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000592 DATIHC010000000
VERSION     DATIHC010000592.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2181
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13194"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..92)
                     /locus_tag="VLF16_09780"
     CDS             complement(<1..92)
                     /locus_tag="VLF16_09780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HSX71213.1"
                     /translation="MRHIISLLLENEPGALSRVVGLFSQRNYNI"
     gene            complement(94..1824)
                     /locus_tag="VLF16_09785"
     CDS             complement(94..1824)
                     /locus_tag="VLF16_09785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 3 large subunit"
                     /protein_id="HSX71214.1"
                     /translation="MELLSGAEMVVRSLRDEGVKYIYGYPGGALLHIYDALFKEPEVT
                     HILVRHEQAATHMADGYARATGKAGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQ
                     VPSRMVGTDAFQETDMVGISRPIVKHSFIIKHPSEIPEVMKKAFYIAQSGRPGPVVVD
                     IPKDMTNPAEKFEYSYPKKAKLRSYNPATRGHSGQIRKAVEMILAAKRPILYSGGGVI
                     MGNASAQLTELAKLLNLPVTNTLMGLGAFPGGDRQFVGMLGMHGSYTANLAMHHSDVI
                     LAVGARFDDRVINGETAAKFCPNAKIIHIDIDPASISKTVKADIPIVGPVDSVLTEMV
                     AILKEIGETPNKDTVGQWWKQIDEWRGEGRLFPYNEGDGSIIKPQAVIETLWEVTKGD
                     AFVSSDVGQHQMFAAQYYRFNKPNRWINSGGLGTMGFGLPSAMGVKLNFPDDDVACVT
                     GEGSIQMNIQELSTCLQYDLPVKIINLNNGALGMVRQWQDMQYSSRYSHSYMESLPDF
                     VKLAESYGHVGMRITDLKDLKPKMEEAFALKNRLVFLDIAVDTSEHVYPMQIREGAMR
                     DMWLSKTERT"
BASE COUNT          399 a          630 c          709 g          443 t
ORIGIN      
        1 tcgatgttgt agttgcgctg ggagaacaga ccgaccacgc gcgacagggc gccaggttcg
       61 ttttccagca acagggaaat gatatggcgc atgtcaggtc cgctccgtct tgctcagcca
      121 catgtcacgc atggcacctt cgcgaatctg catcgggtac acgtgctcgc tggtatccac
      181 tgcgatgtcg aggaacacca ggcgattctt cagggcgaag gcctcttcca tcttcggctt
      241 gagatccttc aggtcggtga tgcgcatgcc cacgtgacca taggattcgg ccagcttgac
      301 gaagtccggc agcgattcca tgtaggagtg cgagtagcgg ctgctgtact gcatgtcctg
      361 ccactggcga accatgccca gcgcaccatt gttcaggttg atgatcttca ccggcaggtc
      421 gtactgcagg caggtcgaca gctcctggat gttcatctgg atgctgccct cgccggtgac
      481 acaggccacg tcatcgtctg ggaagttcag cttgacgccc atggctgacg gcagaccgaa
      541 gcccatggtg cccaggccac cggagttgat ccagcgattg ggcttgttga agcggtagta
      601 ctgcgccgcg aacatctggt gctggccgac gtcggagctg acgaaggcgt cgcccttggt
      661 cacttcccac agggtctcga tcacggcctg gggcttgatg atgctgccgt cgccctcgtt
      721 gtaggggaac aggcggccct cgccgcgcca ctcgtcgatc tgcttccacc actggccgac
      781 ggtgtccttg ttcggggtct cgccgatttc cttgaggatg gcgaccattt cggtgagcac
      841 gctgtcgacc gggccgacga tcgggatgtc ggccttgacg gtcttggaaa tcgaggccgg
      901 atcgatgtcg atgtggatga tcttggcatt cggacagaac ttggccgccg tctcgccgtt
      961 gatcacccgg tcatcgaagc gcgcaccaac ggcgaggatc acgtcggagt ggtgcatggc
     1021 caggttggcg gtgtagctgc cgtgcatgcc gagcatgccg acgaactggc gatcaccgcc
     1081 ggggaaggcg ccgagcccca tcagggtgtt ggtgaccggc aggttgagca gcttggccag
     1141 ctcggtgagc tgagccgagg cgttgcccat gatcacgcca ccgccggaat agaggatcgg
     1201 acgcttggcg gcgaggatca tctccacggc cttgcggatc tgcccggagt gaccacgggt
     1261 cgccgggttg taggagcgca gcttggcctt cttcgggtag ctgtactcga acttctcggc
     1321 cgggttggtc atgtccttgg gaatatccac gacaaccggg ccgggacggc cggactgggc
     1381 gatatagaaa gctttcttca tcacttcggg aatttccgaa ggatgcttga tgatgaagct
     1441 gtgcttcacg atgggacggg agataccgac catgtcggtc tcctggaagg catcggtgcc
     1501 caccatgcgg ctcggcacct ggccggacag caccaccatc ggaatggaat ccatgtaggc
     1561 ggtggcaatg ccggtgatgg cattggtcgc ccccgggccg gacgtcacca gcaccacgcc
     1621 ggccttgccg gtggcgcggg catagccgtc ggccatgtga gtggcagcct gctcgtggcg
     1681 aaccaggatg tgggtcactt ccggctcttt gaacagggca tcgtagatgt gcaggagggc
     1741 accgcccggg tacccgtaga tgtacttaac gccttcgtca cgcaacgagc ggacgaccat
     1801 ttcagcgccg gataaaagct ccacgttgtt cacctctaga acgccagatc accacccgac
     1861 aacgagtggt cctttgagta ggtcttactg gtcagcggac gggcgcgact gtggtcgcga
     1921 atgatgcagg ggtcggcatg acgagtaacg gaacggccca atcttgcgga gcctttcctt
     1981 cccagcgcga ggtaacgcgt tgcgggtgta acgggggtcg gcacggatag cgcctttttc
     2041 cactgagctg agggacgctt gcggcggacc tcactgcagc aggaaggacc gattgttcgg
     2101 attactgaac gccaagtcaa gccatccgcc acagtttctt cgggcctggc ttgtgacatg
     2161 acgcaggatg aagatgcgcg g
//
LOCUS       DATIHC010000593         2942 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34294, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000593 DATIHC010000000
VERSION     DATIHC010000593.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2942)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2942)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2942
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34294"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..480)
                     /locus_tag="VLF16_09790"
     CDS             complement(<1..480)
                     /locus_tag="VLF16_09790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71215.1"
                     /translation="MSIVAPPLAGNPRFDDAWLERVEWRGIDRSGELTRWRVRDTRAG
                     RRWLVVRASPRASQWELARLDREYGLGPSLVETWALLPLARLSTAEGPLLVLDDDGGK
                     PLSAVAAMPLSVERFLHLAIAATAALAQMHRHGLLHRDIRPDNLILGDDGRVRLTGFA
                     "
     gene            complement(623..1600)
                     /locus_tag="VLF16_09795"
     CDS             complement(623..1600)
                     /locus_tag="VLF16_09795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003253577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX71216.1"
                     /translation="MIRLGEAWLSVERREAFLQGEPVRLGSRAFALLEVLLAAPNRLV
                     TKDELIAAIWPDTVVEENNLQVQVSTLRRVLQLDSRLLETVPRRGYRLNLASEPPPVE
                     AAPTCCDDEGWKSLAHVHVVDDEPAVCAALVRLLRSMGIAATGHASAAAFLADCVFER
                     PACLLLDVRLNEGSGFDLLDELARRQAPFPIVFMTGFGTIDMSVRAMKAGALGFLTKP
                     VDECRLLASVREAMERAHSRHAESTLCRSVRTRYASLTERERQIFAGLVRGRLNKEIA
                     AELGLQEVTVKVHKKHIMTKLCTRTLVDLLMVGRVLGMLPELHPHAEPA"
     gene            1788..2696
                     /locus_tag="VLF16_09800"
     CDS             1788..2696
                     /locus_tag="VLF16_09800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003256105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX71217.1"
                     /translation="MNRNELRHLDMNLLVVFEALMIERNLTRVGEKLFITQSTVSAAL
                     SRLRDLFDDPLLIRNGRQMEPTPRALHIFEEVRPAMDVISAAVSRAKAFDPATSTNVF
                     RLGLSDDAEFGLFPALLNALQQEAPNITVVVRRANFLLMPALLASGEISVGVSYTTDL
                     PANAKRRKLRDIGVKVLRGDSRPGPLTLDEYCARPHALVSFSGDLSGNIDNDLANVGR
                     CRKVVLAVPQFGSLRALLRNTEMVATVPDYAACILAEDGVLRADDAPFAINESELSMV
                     WSGVYDSDPAESWLRERIRQYMAAPA"
     gene            2701..2916
                     /locus_tag="VLF16_09805"
                     /pseudo
     CDS             2701..2916
                     /locus_tag="VLF16_09805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019752774.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="OprD family outer membrane porin"
BASE COUNT          450 a         1009 c         1040 g          443 t
ORIGIN      
        1 ggcgaagccg gtcaggcgca cgcgaccgtc gtcaccgagg atcaggttgt ccgggcggat
       61 gtcgcggtgc agcaggccgt ggcgatgcat ctgcgccagc gccgcggtgg cggcgatggc
      121 caggtgcagg aagcgctcca ccgacagcgg catggcggcg acggccgaga gcggcttgcc
      181 gccgtcgtcg tcgagcacca gcagcgggcc ctcggccgtg ctcaggcgcg ccagcggcag
      241 cagcgcccag gtctcgacca ggctcgggcc caggccgtat tcgcggtcga gacgggccag
      301 ttcccactgc gaggcgcgcg gactggcgcg aaccaccagc cagcgccgcc cggcccgggt
      361 atcgcggacc ctccagcggg tcagctcgcc gctacggtcg atgccgcgcc actcgacccg
      421 ttcgagccag gcgtcgtcga agcgcggatt gccggcgagg ggcggggcga cgatgctcat
      481 cgacctggct ccgcgcgagt cgcccgggcg cgccggggcg aggcgggcag gcgccggcgg
      541 atcgaggctg ggtcgtcgct gacgcacacg atctgcatga ggggcctttg gctgtcggga
      601 aagggggcgc cggtggcgcg gctcaggccg gctcggcgtg ggggtggagt tcgggcagca
      661 tgcccagcac acgccccacc atgagcagat ctaccagggt cctggtgcag agttttgtca
      721 tgatgtgctt tttgtgcacc ttcacggtca cctcctgcag gcccagctcg gcggcgatct
      781 ccttgttcag gcggccgcgc acgaggccgg cgaagatctg ccgctcgcgc tcggtcaggc
      841 tggcatagcg cgtccgcacc gagcggcaca gggtgctctc ggcgtggcgg ctgtgggccc
      901 gctccattgc ctcgcgcacg gaggcgagca gccggcactc gtccaccggc ttggtcagga
      961 agcccagggc gccggccttc atggcgcgca ccgacatgtc gatggtgccg aagccggtca
     1021 tgaacacgat ggggaagggc gcctggcgcc gggccagctc gtcgagcagg tcgaagccgc
     1081 tgccctcgtt caggcgtacg tcgagcagca ggcaggccgg gcgctcgaac acgcagtcgg
     1141 cgaggaaggc cgccgccgag gcatggccgg tggcggcgat gcccatcgaa cgcagcagac
     1201 gcaccagcgc ggcgcagacc gccggctcgt cgtccaccac atggacgtgg gccagggatt
     1261 tccagccctc gtcgtcgcag catgtcggcg cggcctcgac cggtggcggt tcgctggcga
     1321 ggttgaggcg gtagccgcgg cgcggcaccg tttccagcag gcgcgagtcc agctgcagca
     1381 cgcggcgcaa ggtggagacc tgcacctgca ggttgttctc ttcgaccacc gtgtcgggcc
     1441 agatggcggc gatcagctcg tccttggtca ccagtcgatt gggcgccgcc agcaacacct
     1501 cgagcagggc gaacgcgcgg ctgccgagcc ggaccggttc gccctgcagg aaggcctctc
     1561 gtcgctctac cgagagccaa gcttcgccta gccgaatcat ggggttactc gttgttttgc
     1621 aaggaaatta ttgttgcgct tcgcagcggg ttggtttcac cgtagaggat gtccgacaac
     1681 ttctcaaccg aagatttcgt gacccggcaa ttcgcacaaa tattcaagtc cggccgtttc
     1741 gcctgtgctc aaatggcagg actcgccgca tatctggatg atggtcgatg aaccgaaacg
     1801 agctgcgtca cctcgacatg aacctgctgg tggtgttcga ggcactgatg atcgaacgca
     1861 acctgacccg cgtgggcgag aagctgttca tcacccagtc cacggtgagc gcggcgctga
     1921 gtcgcctgcg cgacctgttc gacgacccgc tgttgatccg caacggccgg cagatggagc
     1981 cgaccccgcg ggcgctgcac atcttcgagg aagtgcgccc ggcgatggac gtgatcagcg
     2041 cggcggtgag ccgggccaag gccttcgacc cggccaccag caccaacgtg ttccgcctgg
     2101 gcctgtccga cgacgccgag ttcggcctgt tccccgcgtt gctcaacgcc ctgcagcagg
     2161 aggcgccgaa catcaccgtg gtggtgcgcc gcgccaactt cctgctgatg ccggcgctgc
     2221 tggcgtccgg cgagatctcg gtgggcgtga gctacaccac cgacctgccg gccaacgcca
     2281 agcgccgcaa gctgcgcgac atcggcgtca aggtgctgcg cggcgattcg cgccccggtc
     2341 cgctgaccct cgacgaatac tgtgcccggc cccatgcgct ggtgtccttc tccggcgacc
     2401 tgtccggcaa catcgacaac gacctggcca acgtcggccg ctgccgcaag gtggtgctgg
     2461 cggtgccgca gttcggcagc ctgcgcgcgc tgctgcgcaa caccgagatg gtcgccacgg
     2521 tgccggacta cgccgcctgc atcctcgccg aggacggcgt gctgcgcgcc gacgacgcgc
     2581 cgttcgcgat caacgagtcg gagctgtcga tggtctggag cggggtgtac gacagcgacc
     2641 cggccgagag ctggctgcgc gagcgcatcc gccagtacat ggccgcgccg gcctgagccg
     2701 agcccgcgcg gcggcgccta tgccgactcg tatggccgtg gcggacgcca ctgggaacgc
     2761 gacctggacc tgcgctacgt ggtgcagagc ggcgcggccc gcgacctcag cctgagcctg
     2821 gcacacgtcg cgcaccgggc caacgccgcc cagggcggcg ccgatctgga ccgcgtctac
     2881 ctgatcatcg aatacccgct gtcgggcggc ttctgaaaca cccgggcgcc gcggcgaccc
     2941 gc
//
LOCUS       DATIHC010000594         2772 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13206, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000594 DATIHC010000000
VERSION     DATIHC010000594.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2772)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2772)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2772
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13206"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..134)
                     /locus_tag="VLF16_09810"
     CDS             complement(<1..134)
                     /locus_tag="VLF16_09810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003118144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol-disulfide isomerase"
                     /protein_id="HSX71218.1"
                     /translation="MSSRRKFLLVSLAAVLWLGAMLVAYQWFQSRYIRPFEERTELFM
                     G"
     gene            244..1185
                     /locus_tag="VLF16_09815"
     CDS             244..1185
                     /locus_tag="VLF16_09815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004373966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSX71219.1"
                     /translation="MPQPFQPERLRADLRPLAAATVPMPDEVLAYQRYYGLDLPQHGA
                     VRSRLGRFSCDGLELVAQLWLPPEPKATLILLHGYYDHMGLYRHVIDWALGLNLAVLA
                     CDLPGHGLSAGARASIDDFSAYQRTLQCLFAEAASLDLPQPWHLCGQSTGGAILLDFL
                     LLGEKRPEPGATILLAPLVRPRAWGLSRLSYHLIGPFRSQIPRRFSENSSDAEFLEFL
                     RNHDPLQPRHLPTAWVGALARWIPRIEKAPPSPLRPLVVQGEQDMTVDWRHNLRVLQG
                     KFDQPEVLRIPGARHHLANESEGVRREYFAFLTERLR"
     gene            complement(1331..2098)
                     /locus_tag="VLF16_09820"
     CDS             complement(1331..2098)
                     /locus_tag="VLF16_09820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017675930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71220.1"
                     /translation="MRAVFALFMLLCSFAASADDHDRLYQTAGWPEQRAHFADALKAA
                     QQRYQASLPPAVFQALVDNSNRRFAAAAMDRRAQAALRAELADPRPALQFFDSALGRK
                     VVAAEVQATSRERLATHADGLPAVQAEATRRLLIRHLAQALPATEAGAEVSLALAGVA
                     ADSLSSMVPGLFGGGQTQMLLQSQRERLQQQIEGDIDNILLHVYSELSDPELEEFAAF
                     AESPGGKAYYQAALAALRASLAAEEGGSDLQPAQQGI"
     gene            2162..2770
                     /locus_tag="VLF16_09825"
     CDS             2162..2770
                     /locus_tag="VLF16_09825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HSX71221.1"
                     /translation="MTESLLQRLLPHIIDDLAERGWSRQALVLPQSLTRELAEECRNR
                     ARNGALSPAGVGRGQGLAVREGVRGDSIQWLEAGQNAACDRYLAAMDELRQALNQAFY
                     LGLADYESHFAHYPPGAFYQKHLDRFRDDDRRTVSAVLYLNDDWQADQGGALRLYPDG
                     GETLDVLPEAGTLVLFMSADLPHEVLPATRERLSLTGWFRRR"
BASE COUNT          401 a         1010 c          955 g          406 t
ORIGIN      
        1 cccatgaaca gctcggtgcg ctcctcgaag gggcggatgt agcgggattg gaaccactgg
       61 taggcgacca gcatggcgcc cagccagagg acggcggcga ggctgacgag caggaatttg
      121 cggcgggagg acatgatcgc ggcaccaggg aaaggcccgt agcttgccac gccgcgcccg
      181 acagcagaat atcgacggcc tgtcccgacc ctcgaagttg ccatgaccgc catgccccag
      241 aacgtgcccc agcccttcca gcccgagcgt ctgcgcgccg acctgcgacc cttggccgcg
      301 gccaccgtgc cgatgccgga cgaggtgctg gcctaccagc gctactacgg cctggacctg
      361 ccgcagcacg gcgccgtgcg cagccgcctc gggcgctttt cgtgcgacgg cctggagctg
      421 gtcgcgcagc tgtggctgcc gcccgagccc aaggcgacgc tgatcctgct gcatggctat
      481 tacgaccaca tgggcctgta ccgccacgtg atcgactggg ccctgggcct gaacctcgcg
      541 gtgctggcct gcgacctgcc gggccacggc ctgtctgccg gggcgcgcgc cagcatcgat
      601 gacttctccg cctaccagcg caccctgcaa tgcctgttcg ccgaggccgc cagcctcgac
      661 ctgccgcagc cctggcatct ctgcgggcag agcaccggcg gcgccatcct gctggacttc
      721 ctgctgctcg gcgagaaacg ccccgagccc ggtgccacca ttctcctggc gccgctggtg
      781 cgaccgcgtg cctggggcct gtcgcggctc agctaccacc tgatcgggcc gttccgctcg
      841 cagatcccgc ggcgcttctc ggagaactcc agcgacgccg aattcctcga gttcctgcgc
      901 aatcacgatc cgctgcagcc gcgccatctg ccgaccgcct gggtcggcgc cctggcccgg
      961 tggatcccgc gcatcgagaa ggccccgccc agcccgctgc ggccgctggt ggtacagggc
     1021 gaacaggaca tgacggtgga ctggcggcac aacctgcggg tgctgcaggg caagttcgat
     1081 cagccggagg tgctgcgcat ccccggcgct cgtcatcatc ttgccaacga gagcgagggc
     1141 gtgcgccgcg agtatttcgc cttcctcacc gagcgcctga ggtaacgcgc caccctgtgg
     1201 gagcggcctc ggccgcgata ccggcgaatg tcgccctcac ccatcagccg tagcccggat
     1261 gcaatccggg aaacaagcga ctccgcctca cgacccgcct cgccttgctc ggcgcggttg
     1321 ggccgtggcg tcagatgccc tgctgagccg gctgcaggtc gctgccaccc tcttcggccg
     1381 ccagcgacgc gcgcagggcg gccagcgccg cctgatagta ggccttgccg ccgggcgact
     1441 cggcgaaggc ggcgaactcc tccagctccg ggtcggacag ctcgctgtag acatgcagca
     1501 ggatgttgtc gatgtcgccc tcgatctgct gctgcaggcg ctcgcgctgg ctctgtagga
     1561 gcatctgcgt ctgcccgccg ccgaacaggc ccggcaccat ggagctgagg ctgtcggccg
     1621 cgacgccggc cagggccagg ctgacctccg cgccggcctc ggtggccggc agcgcctggg
     1681 ccaggtgacg gatcagcagg cgccgggtgg cttccgcctg caccgccggc aggccgtcgg
     1741 catgggtggc cagccgctcg cgggaggtcg cctgcacctc ggccgccacc accttgcggc
     1801 ccagcgccga gtcgaagaac tgcagagccg gccgggggtc ggccagttcc gcgcgcagcg
     1861 cggcctgggc gcgccggtcc atggcggcgg cggcgaagcg gcggttgctg ttgtccacca
     1921 gggcctggaa caccgccggc ggcaggctgg cctggtagcg ctgctgggcc gccttgagag
     1981 cgtcggcgaa gtgggcgcgc tgctccggcc agcccgcggt ctggtagagc cggtcgtgat
     2041 cgtcggcgga agcggcgaag ctgcacagca gcatgaacag agcgaatacg gcgcgcatga
     2101 attactcctg tctggcgcgg ctattgtagg ggcccgtagg cggcactggt agaatcggcg
     2161 catgaccgaa tccctcctgc aacggctcct gccgcacatc atcgacgacc tggccgagcg
     2221 cggctggtcg cggcaggcgc tcgtcctgcc gcagtctctg acccgcgaac tggccgagga
     2281 gtgccgcaac cgcgcccgca atggcgcgct gagcccagcc ggcgtcggcc gcggccaggg
     2341 cctggcggtg cgcgagggcg tgcgcggcga cagcatccag tggctggagg ccggccagaa
     2401 cgccgcctgc gaccgctacc tggcggccat ggacgagctg cgccaggcgc tcaaccaggc
     2461 cttctacctg ggcctggccg attacgagag ccacttcgcc cactatccgc cgggcgcctt
     2521 ctaccagaag cacctggatc gcttccgcga cgacgaccgc cgcacggtat cggcggtgct
     2581 ctacctcaac gatgactggc aggccgacca gggcggcgcc ctgcgcctct accccgacgg
     2641 cggcgagacg ctggacgtgc tgccagaggc cggtacgctg gtgctgttca tgtccgccga
     2701 cctgccccat gaagtgctgc cggcgacccg cgaacgcctg tcgttgaccg gctggttcag
     2761 gcggcgctag cc
//
LOCUS       DATIHC010000595         1779 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_24121, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000595 DATIHC010000000
VERSION     DATIHC010000595.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24121"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(261..599)
                     /locus_tag="VLF16_09830"
     CDS             complement(261..599)
                     /locus_tag="VLF16_09830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3703 domain-containing protein"
                     /protein_id="HSX71222.1"
                     /translation="MRTELEVALRQAFVEAERALEQGEPAAALIWLERAHILGQRMPL
                     RHARSHWLMLRAGWQLRDWREVVGQVPRIVAALLFSRLWVPPGNSGRARVNAFRPMPV
                     GDELMRLLDE"
     gene            complement(589..1221)
                     /locus_tag="VLF16_09835"
     CDS             complement(589..1221)
                     /locus_tag="VLF16_09835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010483377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HSX71223.1"
                     /translation="MGAHCCNHDSPEAALRSRRYRRILWIALAVNLAMFAVEIGAGLK
                     AGSVSLLADSLDFMGDAANYAISLWVLGMALSWRARAAQFKAASMLLFGIGVLGAALW
                     HWWQGEVPSAPTMGLIGALALAANVGVAVLLYAYREGDSNMRSVWLCTRNDALGNLAV
                     LAAALGVFGTGSAWPDLIVASIMATLAITAAVQVLRQADGELKDGHGHAH"
     gene            1283..1708
                     /locus_tag="VLF16_09840"
     CDS             1283..1708
                     /locus_tag="VLF16_09840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010483378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family DNA-binding protein"
                     /protein_id="HSX71224.1"
                     /translation="MGKAITIGVLARDSGVNLETIRFYERSGLLPPPQRSASGYRHYR
                     EVDVRRLRFIRRGRELGFSLDEIRSLLDLAAHPESPCASADQMVSEHLDTIAARIRDL
                     QNMQAELSKLTGCQSDHAEHCRLLEALDDRECCGAATKR"
BASE COUNT          308 a          675 c          565 g          231 t
ORIGIN      
        1 ggccccgacg ggccatgcct ctacggagcc ccgcccgacc gtagggtggc ctcgcccgca
       61 acgcgggcag cccaccaacg agtccccagc ggtgcaccgc cttcggcgag ggcaccctac
      121 tcgcagcatc cgcctacgcc catcggcccc gacgagccat gcctctacgg agccccgccc
      181 gaccgtaggg tggcctcgcc cgcaacgcgg gcagcccacc aacgcccccc cagcggtgca
      241 ctgcctccgg cgaaggcacc ctactcatcc agtagccgca tcagctcgtc gccgaccggc
      301 atcggcctga acgcattcac ccgcgcccgc ccgctgttgc ccggcggcac ccagagtcgc
      361 gaaaacagca gcgcggcgac gatgcgcggc acttgcccca ccacctcacg ccaatcgcgc
      421 agctgccaac cggcacgcag catcagccag tgcgaacggg catggcgcag cggcatgcgc
      481 tggccgagga tatgcgcccg ctccagccag atcagcgcgg cggcgggctc gccctgttcg
      541 agcgcccttt cggcctcgac aaaggcctgg cgcagcgcga cctccagctc agtgcgcatg
      601 gccgtgcccg tccttcagct cgccatcggc ctggcgcagc acctgcacgg cggcggtgat
      661 cgccagtgtg gccatgatgc tggcgacgat caggtcgggc caggcgctgc cggtaccgaa
      721 cacgcccagc gccgcggcca gcacggcgag gttgccgagg gcatcgttgc gcgtacataa
      781 ccagacgctg cgcatgttgc tgtcgccctc gcggtaggcg tagagcagca ccgccacgcc
      841 aacattcgcg gccagcgcca gggcaccgat caggcccatg gtcggcgcgc tgggcacctc
      901 gccctgccac cagtgccaga gcgcagcgcc cagcacgccg ataccgaaca gcagcatgct
      961 ggcagccttg aactgcgccg cgcgggcgcg ccagctcagg gccatgccca gcacccacag
     1021 gctgatggcg tagttggcgg catctcccat gaagtccagc gagtcggcca gcagcgagac
     1081 cgagccggcc ttgaggcccg cgccgatctc caccgcgaac atggccaggt tgaccgccag
     1141 cgcgatccac aggatgcgcc ggtagcgccg cgagcgcagc gcggcttcgg gcgagtcgtg
     1201 attgcagcag tgagcaccca tttggcatct cctctgtcag ggtgcagact acgctaaacc
     1261 ctgtagtcac tacggagtca acatgggcaa ggccatcacc atcggcgtgc tcgcccgcga
     1321 cagcggcgtg aatctggaaa ccatccgttt ctacgagcgc agcggcctgc tgccgccacc
     1381 ccagcgcagc gcgtccggct atcgccacta tcgggaggta gatgtcagaa ggctgcgctt
     1441 tatccgtcgc gggcgtgaac tcggcttcag cctggacgag atccgcagcc tgctcgacct
     1501 cgccgcgcac ccggaaagcc cctgcgccag cgccgaccag atggtcagcg agcacctcga
     1561 caccatcgcc gcgcgcatcc gcgatctgca gaacatgcag gccgagctga gcaagctgac
     1621 cggctgccag agcgaccacg ccgaacactg ccggctactg gaggcgctgg acgaccggga
     1681 gtgctgcggc gccgccacta agcgttaacc gagcgcggca gccgggcagt ccttgcctcg
     1741 gtggaggtgc aatgagcggc ccgggctcag tgcctggcc
//
LOCUS       DATIHC010000596         4953 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_3960, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000596 DATIHC010000000
VERSION     DATIHC010000596.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4953)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4953)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4953
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3960"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..222
                     /locus_tag="VLF16_09845"
     CDS             <1..222
                     /locus_tag="VLF16_09845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004577078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin"
                     /protein_id="HSX71225.1"
                     /translation="CPFCVKTRRALHRLNVPVALRDAKNDEARRQELLEQGGKVQVPC
                     LRIEESGEVRWLYESKAIGAYLNERFAAR"
     gene            complement(263..865)
                     /locus_tag="VLF16_09850"
     CDS             complement(263..865)
                     /locus_tag="VLF16_09850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013715172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HSX71226.1"
                     /translation="MFKVYGDYRSGNCYKVKLMLHLLGHEYQWLPIDILKGETQTAEF
                     LAKNPNGKIPVLELEDGTFLWESNAILNFLADGSEFLPAEPRLRTQMLQWQFFEQYSH
                     EPYVAVARFIQLYQGLPEARRAEYENCHKGGHKAFKVMEQQLERTPYLVGDQFTLADI
                     ALYAYTHVADEGGFDLSGYPAINAWLDRVASHPRHVSMFG"
     gene            complement(868..2028)
                     /locus_tag="VLF16_09855"
     CDS             complement(868..2028)
                     /locus_tag="VLF16_09855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HSX71227.1"
                     /translation="MAFSERVARLKSSLIREILAAAQRPEVMSFAGGLPAEPMLPKVD
                     WSEMPASIGQYGMSEGEPALREAVAAEARKLGVPCDASQVLITCGSQQTLDLASKLFI
                     DPGTEILVEAPTYLAALQSFQLFGADCITVPQEADGPELEALRERLQQHKPAFAYLIP
                     TFQNPSAVRYSEAKRDAVAALLDEFDVTLIEDEPYRELVFDAGSATPIVSRLRRTSWI
                     YTGTVSKTLLPGLRVGFLIASPDLFPHLLRLKQAADLHTNRIGQWQALQWFGTEKYSA
                     HLAELRDFYRVRRDAMQVALEEHFGDLASWQVPQGGLFFWLTLNDKLDTRTLLQPAMA
                     QNVAFMPGEPFFVDPDANPGHLRLNFSHVPPEKLGEGLRRLAAVIREAQGGQ"
     gene            2113..2565
                     /locus_tag="VLF16_09860"
     CDS             2113..2565
                     /locus_tag="VLF16_09860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007960657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HSX71228.1"
                     /translation="MLDLKKPSSQQAAMEAFFFGYQAFTAKPDEMLARRGLSRVHHRI
                     LFFIARYPGLSVKELLGYLGVTKQALNIPLRQLQEMSMVESVAASDDKRKRQLGLTAE
                     GAKLEQALRREQARLLEKVFKDAGEPAVRAWLAINQALGKARQAAGED"
     gene            complement(2566..3189)
                     /locus_tag="VLF16_09865"
     CDS             complement(2566..3189)
                     /locus_tag="VLF16_09865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004422393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71229.1"
                     /translation="MDQNNPYAAPRVELVDAQAPRPLSGWSPGQLRVLGWLNLAYVVV
                     TLAVISLAFAPELTLVGDWLSLAGTLLGCYLALRLKAFLEARFDARGLTWPVWLSVAL
                     GLLLELAQLYWGEASLSGLGAPSITYFALLALLGLVLLWTGIVLLKVVNAYPSVRVLA
                     WLNVAAGVLVASVILMMIGVLPLLAAMVASALVFFRGAKELEGSQAA"
     gene            3331..3936
                     /locus_tag="VLF16_09870"
     CDS             3331..3936
                     /locus_tag="VLF16_09870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017517242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HSX71230.1"
                     /translation="MTSELLIAFVLFAFVTSVTPGPNNMMLLASGVNFGVRRSVPHML
                     GISLGFMVLVAAVGLGLGQLFERFSPLYTALRYGGAAYLLYLAWKIAGAGAPDADGKG
                     TGKPFTFLQAAAFQWVNPKAWIMAIGAITTYTPQDGFLVNVLLIAALFALVNCPSVGL
                     WTVAGSLLRRWLDKPRVLRAFNIGMALLLVASLYPILKDSF"
     gene            3936..>4953
                     /locus_tag="VLF16_09875"
     CDS             3936..>4953
                     /locus_tag="VLF16_09875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007932192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042925 - benzoate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0042919 - benzoate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="benzoate/H(+) symporter BenE family transporter"
                     /protein_id="HSX71231.1"
                     /translation="MTDSTMDDSRRLRPLADSSPSAMVAGFVSALTGYTSSLVLMFQA
                     GQAAGLSAAQISSWLWALSIGMAICTIGLSLRYRAPIVVAWSTPGAALLITSMPGVSY
                     PEAVGAFVLCAVLLAFLGLSGAFERVMRHLPASLAAALLAGILFRIGSEIFVAAQTST
                     LLVLAMFFSFLLCKRLVPRYAVMVALIVGAAVAGAQGMLDFSRFELEVAVPVWTTPSF
                     SLSAAISIGIPLFVVAMASQNIPGLAVLRADGYDVPPSPMIATTGIASLLLAPFGSHG
                     INLAAISAAICTGAEAHEDKHKRYTAALWNGVFCGIAGIFAATLAALFVALPSALILS
                     IAALA"
BASE COUNT          802 a         1720 c         1613 g          818 t
ORIGIN      
        1 tgcccgttct gcgtgaaaac ccgccgcgcc ctgcaccgcc tgaacgtgcc ggtggcgctg
       61 cgtgacgcga agaacgacga agcccgccgt caggaactgc tggaacaggg cggcaaggtg
      121 caggtgccct gcctgcgcat cgaggagtcc ggcgaagtgc gctggctgta cgagtccaag
      181 gccatcggcg cctacctgaa cgagcgtttc gccgcccggt aagcagctga agcgggcccg
      241 ccggggcccg cgccgtcaga tatcagccga acatgctcac gtggcgcggg tggctagcga
      301 cccggtcgag ccaggcgttg atcgccggat agcccgagag gtcgaagccg ccttcgtccg
      361 ccacgtgggt gtaggcgtac agggcgatgt cggccagggt gaactggtcg cccaccagat
      421 acggcgtgcg ctcgagctgc tgctccatca ccttgaaggc cttgtggccg cccttgtggc
      481 agttctcgta ctcggcacgg cgcgcctccg gcaggccctg ataaagctgg atgaagcgcg
      541 ccaccgccac gtagggttcg tggctgtact gctcgaagaa ctgccactgc agcatctgcg
      601 tgcgcaggcg cggctcagcc gggaggaact cgctgccatc ggcgaggaag ttgaggatgg
      661 cattggattc ccagaggaag gtgccatctt ccagctccag caccggaatc ttgccgttgg
      721 gattcttcgc cagaaactcg gcggtctgcg tctcgccctt gaggatgtcg atcggcagcc
      781 actggtactc gtggcccagc agatggagca tcagcttgac cttgtagcag ttgccggaac
      841 ggtaatcgcc gtagaccttg aacatcgcta ttgccctcct tgcgcttcac ggatgaccgc
      901 cgccaggcga cgcaggcctt cgcccagctt ctccggcggc acatggctga aattcaaccg
      961 cagatgacca gggttggcat ccgggtcgac gaagaacggc tcgcccggca tgaacgccac
     1021 gttctgcgcc atggccggct gcagcagggt gcgggtgtcc agcttgtcgt tcagggtcag
     1081 ccagaagaac agaccaccct gcggcacctg ccagctggcc agatcgccga agtgctcctc
     1141 cagcgccacc tgcatggcgt cgcggcgtac gcgatagaag tcgcgcagct cggccaggtg
     1201 agcgctgtac ttctcggtgc cgaaccactg cagcgcctgc cactgaccga tgcggttggt
     1261 gtgcaggtcg gcggcctgtt tcaggcgcag caggtgcggg aacaggtccg ggctggcgat
     1321 cagaaagccc acgcgcaggc ccggcagcag cgtcttcgac acggtgccgg tgtagatcca
     1381 gctggtgcgc ctgaggcggc tgacgatcgg cgtggcgcta ccggcgtcga acaccagctc
     1441 gcggtacggc tcgtcctcga tcagggtgac gtcgaactcg tcgagcagcg ccgccacggc
     1501 gtcgcgcttg gcctcgctgt agcgcacggc agacgggttc tggaaagtcg ggatcaggta
     1561 ggcgaaggcc ggcttgtgct gctgcaggcg ctcgcgcaga gcctccagct ccgggccgtc
     1621 ggcctcctgc ggcacggtga tgcagtcggc gccgaacagc tggaacgact gcagcgcggc
     1681 caggtaggtc ggcgcctcaa cgagaatttc cgtgcccgga tcgataaaca gcttgctggc
     1741 caggtccaga gtctgctgcg aaccgcaggt gatcagcacc tgactcgcgt cgcacggcac
     1801 gcccagcttg cgcgcctcgg cggccaccgc ctcgcgcagc gccggctcgc cctcgctcat
     1861 gccgtactgg ccgatggaag ccggcatctc gctccagtcc accttcggca gcatcggttc
     1921 ggccggcagg ccgccggcga aggacatcac ctccggacgt tgcgccgcgg cgaggatttc
     1981 gcggatcagg gagcttttca ggcgggcaac gcgttcggag aaggccatgg gagagtcacc
     2041 ggtagcacgg gcaggataaa ttgggtcaaa ctgtttgacc gaaactacga cgccgggaat
     2101 ggatacgtca atatgcttga cctgaaaaag ccgagctcgc agcaggccgc catggaagcc
     2161 ttcttcttcg gctaccaggc cttcaccgcc aagcccgacg agatgctggc gcgccgtggt
     2221 ctgtcccgcg tgcaccatcg catcctgttc ttcatcgccc gctatcccgg cctgagcgtg
     2281 aaggaactgc tcggctatct cggcgtcacc aagcaggcgc tgaacatccc gctgcgccag
     2341 ctgcaggaaa tgtccatggt cgagagcgtc gcggccagcg acgacaagcg caaacgccag
     2401 ctcggcctca ccgccgaggg cgccaagctc gaacaggcgc tgcgccgcga gcaggcgcgg
     2461 ctgctggaga aggtcttcaa ggacgccggc gaaccggccg tgcgcgcctg gctggcgatc
     2521 aaccaggccc tgggcaaggc ccgccaggcc gccggcgagg actgatcagg ccgcctgact
     2581 gccctcgagc tccttggcgc cgcggaagaa caccagcgcc gaggccacca tggccgcgag
     2641 caacggcaat acgccgatca tcatcaggat caccgaggcc accagcacgc ctgcggcgac
     2701 attcagccag gccaggacac gcacggaggg ataggcgttc accaccttga gcagcacgat
     2761 gcccgtccac aacagcacca gcccaagcag tgcgagcagc gcgaaatagg tgatcgaagg
     2821 cgcgccgagg ccgctcagcg acgcctcgcc ccaatacagc tgggcgagct ccagcagcaa
     2881 gcccagcgcc acgcttagcc acaccggcca ggtcaggcca cgggcatcga agcgcgcctc
     2941 gaggaacgcc ttcaggcgca gtgccagata gcagcccagc agcgtgcccg ccaggctcag
     3001 ccaatcgccg accagggtca gctcgggggc gaacgccagg ctgatcaccg ccagcgtgac
     3061 caccacatag gccaggttga gccagccgag caccctgagc tgccccggac tccagccgga
     3121 cagcgggcgc ggtgcctggg cgtctaccaa ctccacccgc ggcgcggcat agggattgtt
     3181 ctgatccatc gagcatttct ccttgtgtga cgggaacagt ctccactggc cccgccaggc
     3241 tggaaaactg tacggccgtt tgaccggatc gctgtaccgc gacgcccgga caggctgcgc
     3301 ataggctgcc agcatccacg gagaaccgcc atgacctcgg aattgctgat cgccttcgtc
     3361 ctcttcgcct tcgtcacctc ggtgacgccc ggcccgaaca acatgatgct gctggcctcc
     3421 ggagtgaact tcggcgtgcg ccgcagcgtg ccgcacatgc tcggcatcag cctgggcttc
     3481 atggtgctgg tggccgcggt gggcctgggc ctgggccagc tgttcgagcg gttctcgccg
     3541 ctgtacacgg cgctgcgcta cggcggcgcc gcgtacctgc tgtacctggc ctggaagatt
     3601 gcgggcgcag gcgccccgga cgccgacggc aagggcaccg gcaagccgtt caccttcctg
     3661 caggcggcgg ccttccagtg ggtcaatccc aaggcctgga tcatggccat cggcgccatc
     3721 accacctata ccccgcagga cggcttcctg gtcaacgtgc tgctgatcgc cgcgctgttc
     3781 gccctggtca actgccccag cgtcggcctg tggaccgtcg ccggcagcct gctgcgccgc
     3841 tggctggaca agccgcgggt gctgcgcgcc ttcaacatcg gcatggccct gctgctggtg
     3901 gcttcgctct accctattct caaggacagc ttctgatgac cgactcgacc atggacgact
     3961 cccgccgcct gcgcccgctc gccgactcct cgccctcggc catggtggcc ggtttcgtct
     4021 ccgccctcac cggctacacc agctcgctgg tgctgatgtt ccaggccggc caggccgcgg
     4081 gattgagcgc cgcgcagatt tcctcctggc tgtgggcgct gtcgatcggc atggccatct
     4141 gcaccatcgg tctgtcactg cgctaccgcg cgcccatcgt ggtggcctgg tcgacccccg
     4201 gtgcggcgct gctgatcacc agcatgccgg gggtgagcta cccggaggcg gtcggcgcct
     4261 tcgtgctctg cgcggtgctg ctcgccttcc tcggcctttc cggtgcgttc gagcgggtga
     4321 tgcgccacct gccggcctcg ctggcggcgg cgctgctggc cggcatcctg ttccgcatcg
     4381 gcagcgagat cttcgtcgcc gcgcagacca gcacgctgct ggtgctggcc atgttcttca
     4441 gcttcctgct gtgcaagcgc ctggtgccgc gctatgcggt gatggtcgcg ctgatcgtcg
     4501 gcgcagccgt ggccggcgcg cagggcatgc tcgacttcag ccgttttgaa ctggaggtgg
     4561 cggtgccggt gtggaccacg ccgagcttct ccctcagcgc cgcgatcagc atcggcatcc
     4621 cgctgttcgt ggtggcgatg gcctcgcaga acatccccgg cctcgccgtg ctgcgcgcgg
     4681 acggctacga cgtgccgccc tcgccgatga tcgccaccac cggcatcgcc tcgctgctgc
     4741 tggcgccctt cggctcccac ggtatcaacc tggcggccat cagcgcggcc atctgcaccg
     4801 gtgccgaggc ccacgaggac aaacacaagc gctacaccgc agccctgtgg aacggcgtgt
     4861 tctgcggcat cgccgggatc ttcgccgcca ccctggctgc gctgttcgtc gccctgccca
     4921 gcgccctgat cctgtccatc gcggcgctcg ccc
//
LOCUS       DATIHC010000597         3540 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_32092, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000597 DATIHC010000000
VERSION     DATIHC010000597.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3540)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3540)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3540
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32092"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..102)
                     /locus_tag="VLF16_09880"
     CDS             complement(<1..102)
                     /locus_tag="VLF16_09880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007898567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSX71232.1"
                     /translation="MKPETAVLDIHGQYRIYTELYRASGAERTIILVN"
     gene            complement(439..1131)
                     /locus_tag="VLF16_09885"
     CDS             complement(439..1131)
                     /locus_tag="VLF16_09885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017677875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HSX71233.1"
                     /translation="MRLDRFLSNLPRFSRADARLLLAAGRLKVDGATVRDARVEVREF
                     SRIELDDELLQAGKPARYFMLNKPAGVVSATQHGEHRTVLNLLDEPDKHELHIAGRLD
                     LTTTGLLIVTNDGLWSRRLTEPRSRLGKVYRVSTEQPITEEYAEVFARGLYFAYEDLT
                     TLPAELQIVDSHTALLTLHEGRYHQVKRMFGHFQNKVIGLHRERMGPLALDPNLAPGQ
                     YRALSAEEIAAV"
     gene            complement(1134..1337)
                     /locus_tag="VLF16_09890"
     CDS             complement(1134..1337)
                     /locus_tag="VLF16_09890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003451011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich CWC family protein"
                     /protein_id="HSX71234.1"
                     /translation="MNTERCPRCGRPNRCAQAGNAQPVQDCWCFHTPVAPEALEALPA
                     EARDKACLCPACAAATGDDAQPD"
     gene            complement(1334..2818)
                     /locus_tag="VLF16_09895"
     CDS             complement(1334..2818)
                     /locus_tag="VLF16_09895"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013792364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HSX71235.1"
                     /translation="MPLSTSRKAQFSLLLLLTVLLLGGFLATSLVSYYASRDSIRDSI
                     VNTELPLTSDNIYSEIQKDLIRPTQIASMMSRDTFLRDWALDGEQNAVPMTRYLREIQ
                     DHYGTFTSFFVSEKTRTYYQAKGVLKQVREDEPRDIWYFRVRDMAEPYEISVDPDLAN
                     RDRLTFFINFKVFDYEERFIGVAGVGLTVDAVVKLVDDYQRRYDRSIYFTDRHGRLVL
                     TSAAGGPMGAQRGQLLSEVPGLESMLKVLPKPATGRFDYSEGGRSHFIYVRYIPELDW
                     FLFVDKHEEHALANIRHSLYLNLIICAAISLVVLLLVHQAIRRYQRRIAALATTDVLT
                     GLPNRRGFDLLAAQALQEAIREQSPLSALLIDLDHFKNLNDTHGHLAGDQVLRGFARA
                     LQSNLRQSDIICRWGGEEFILLLKGTGSSTARQLAEKIREQTEQEVFLFNGVNLRITT
                     SIGVTELQGDENMDRLIARADRALYRAKQSGRNRVCEDAGGLQS"
     gene            complement(2850..>3540)
                     /locus_tag="VLF16_09900"
     CDS             complement(2850..>3540)
                     /locus_tag="VLF16_09900"
                     /inference="COORDINATES: protein motif:HMM:NF027432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4824 family protein"
                     /protein_id="HSX71236.1"
                     /translation="DWEGPHQENSGLSARLSWRLPELSELPDDECSDQRGLSEAQLRS
                     VGALDTRRDSVRGWAVLELDGPAYRQSVQRAEQRLQQAAERARQLPDDRRLQDAAQAA
                     RKALAEERSRESRLFLIDVGPDASALRQRYPDRARHAVLPGTVNVWSACRVGGEWHRS
                     GSVTLHSETINVPHHWREALAERIPSYYDDKRAAFTAELSIGQRFEPWLSAVRIAENP
                     ATAGDASDNAR"
BASE COUNT          504 a         1099 c         1297 g          640 t
ORIGIN      
        1 gttgaccagg atgatggtgc gctctgcgcc gctggcgcga taaagctccg tgtagatccg
       61 atattgcccg tggatatcca gcacagcggt ttccggcttc atgttcttgc cccccgacga
      121 cattcggcga ttcctggacg cgcagcgatg caccgaggct gcgcgagctt cagagcaggt
      181 aggcatgtgc ctggggaagg gaggcctggt cggctcgaag ggctggccga cgaattgttg
      241 ttggaggcgg ggtgcctgtt ccgacgggca tcggcctgga aggacgatga gggcagaccc
      301 gtgtgggtgg gaaaaggctt cttagaatgt gttttcgact tatcggtcac aaccggaccg
      361 tggttttgat tcaagcagcc ccgtgttgca ggtgcaagtc agtagtgcgg catggcaacg
      421 cattccgccg gacggtcttc acaccgccgc gatctcctcg gcgctcagcg cccggtactg
      481 cccgggcgcc aggtttgggt cgagggcgag cgggcccatg cgctcgcggt gcaggccgat
      541 gaccttgttc tggaagtggc cgaacatgcg cttgacctgg tgatagcgcc cctcgtgcag
      601 ggtcagcagg gcggtgtgtg aatcgactat ctgcagttcg gccggcagcg tggtgaggtc
      661 ctcgtaggcg aagtacaggc cgcgggcgaa gacctcggcg tattcctcgg tgatcggctg
      721 ctcggtgctg acccggtaga ccttgcccag gcggctgcgc ggctcggtga ggcggcgcga
      781 ccagaggccg tcgttggtga cgatcagcag gccggtggtg gtcaggtcca ggcgcccggc
      841 gatgtgcagt tcgtgcttgt ccggctcgtc gagcaggttg agcacggtgc ggtgttcgcc
      901 gtgttgcgtg gcgctgacca caccggccgg tttgttgagc atgaagtagc gcgccggctt
      961 gccggcctgc agcagctcgt cgtccagctc gatacggctg aactcgcgca cctcgacgcg
     1021 ggcgtcgcgc accgtggcgc cgtccacctt caggcgcccg gcggccagca gcaggcgggc
     1081 gtcggcgcgg ctgaagcgcg gcaggttgct gaggaaacgg tcgaggcgca tcgctagtcg
     1141 ggctgggcgt cgtcgccagt ggcggcggcg caggcggggc acaggcaggc cttgtcacgc
     1201 gcctcggcgg gcagtgcctc gagtgcctcg ggagcaaccg gcgtgtggaa gcaccagcag
     1261 tcctgcaccg gctgcgcgtt gccggcctgg gcgcagcggt tgggccggcc gcagcgcggg
     1321 caacgctcgg tgttcacgac tgcaggccgc cggcgtcttc gcacacgcgg ttgcggccgg
     1381 actgcttggc ccggtacagc gcgcggtcgg cgcgggcgat caggcggtcc atgttctcgt
     1441 caccctgcag ttcggtgacg ccgatgctgg tggtgatgcg cagattgacg ccgttgaaca
     1501 ggaacacctc ctgctcggtc tgctcgcgga tcttctccgc cagctggcgc gccgtgctgc
     1561 tgccggtgcc cttgagcaga aggatgaatt cctcgccgcc ccagcggcag atgatgtccg
     1621 actggcgcag gttgctctgc agcgcccggg cgaagccgcg aagcacctgg tcgccggcca
     1681 ggtggccgtg ggtgtcgttg aggttcttga aatggtccag gtcgatcagc agggcgctca
     1741 gcgggctctg ctcgcggatg gcctcctgca gtgcttgcgc ggccagcagg tcgaagccgc
     1801 ggcggttggg caggccggtg agcacgtcgg tggtggccag ggcggcgatg cgccgttggt
     1861 agcggcggat ggcctggtgc accaggagca gcaccaccag gctgatggcc gcgcagatga
     1921 tcagattgag atacaggctg tggcggatgt tggcgagcgc atgttcctcg tgcttgtcga
     1981 cgaacaggaa ccagtccagt tcggggatgt agcgcacgta gatgaagtgg ctgcgtccgc
     2041 cttcgctgta gtcgaagcgg ccggtggcgg gcttcggcag caccttcagc atcgactcca
     2101 gccccggcac ctcactgagc agctggccgc gctgcgcgcc catcgggccg cccgcggcgc
     2161 tggtcaggac caggcggccg tggcggtcgg tgaagtagat gctgcggtcg tagcggcgct
     2221 ggtagtcgtc gaccagcttg accaccgcgt ccaccgtcag gccgacgccg gccacgccga
     2281 tgaagcgttc ctcgtagtcg aacaccttga agttgatgaa gaaggtcagg cggtcgcggt
     2341 tggccaggtc cgggtcgacg ctgatctcgt agggctcggc catgtcgcgt acgcggaagt
     2401 accagatgtc gcgcggctcg tcctcgcgaa cctgcttgag cacgcccttg gcctggtagt
     2461 aggtgcgggt cttctcggag acgaagaagc tggtgaaggt gccgtagtga tcctggatct
     2521 cgcgcaggta gcgggtcatg ggcacggcat tctgctcgcc gtccagggcc cagtcgcgca
     2581 ggaaggtgtc gcgcgacatc atcgaggcga tctgcgtcgg gcggatcagg tccttctgga
     2641 tttccgagta gatgttgtcg gaggtcagcg gcagctcggt gttgacgatg ctgtcgcgga
     2701 tgctgtcgcg cgaggcgtag tagctgacca ggctggtggc gagaaaaccg cccagcagca
     2761 ggacggtcag gagcagcagc agggaaaact gggccttgcg ggacgtgctg agcggcatgg
     2821 aagcggggcc tcgaaaaagt ggcgcaatgc tatcgcgcgt tgtcgctggc gtcaccggcg
     2881 gtggccgggt tttccgcgat ccgcaccgcg ctcagccagg gctcgaaacg ctggccgatg
     2941 ctgagctcgg cggtgaaggc cgcgcgcttg tcgtcgtagt agctgggtat gcgctcggcc
     3001 agcgcttccc gccagtgatg cggcacgttg atggtctcgc tgtgcagcgt caccgagccg
     3061 ctgcgatgcc attctcctcc gacccggcag gcgctccaca cgttcaccgt gcccggcagc
     3121 acggcatggc gcgcgcggtc cgggtagcgc tggcgcagcg cgctggcgtc cggccccacg
     3181 tcgatcagga acagccggct ctcccggctg cgctcttcgg ccagggcctt gcgcgccgct
     3241 tgtgccgcgt cctgcagacg ccggtcgtcc ggcaactgcc gggcccgctc ggccgcctgc
     3301 tgcagccgtt gctcggcccg ctgtacggac tgccggtagg ccggcccgtc cagctccagt
     3361 accgcccagc cgcggacgct gtcgcgtcgc gtatcgagcg cgccgacgct gcgcagctgc
     3421 gcttcgctca ggccgcgctg gtcggaacat tcgtcgtccg gcagttccga cagttccggc
     3481 aggcgccagc tcagccgcgc gctcagtccg ctgttctcct ggtgcggtcc ttcccagtcg
//
LOCUS       DATIHC010000598         6977 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21764, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000598 DATIHC010000000
VERSION     DATIHC010000598.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6977)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6977)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6977
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21764"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..160
                     /locus_tag="VLF16_09905"
     CDS             <1..160
                     /locus_tag="VLF16_09905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253991.1"
                     /note="catalyzes the oxidative deamination of D-amino
                     acids; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="D-amino acid dehydrogenase"
                     /protein_id="HSX71237.1"
                     /translation="GTLGWTMACGSGRFLADLMAKKRPQISAEGLDISRYGNTKENHK
                     HAHPAPAH"
     gene            135..488
                     /locus_tag="VLF16_09910"
     CDS             135..488
                     /locus_tag="VLF16_09910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013713456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HSX71238.1"
                     /translation="MPIQRLRIEKRLSEIVIHNGTVYLAGQLADDYDGDIREQTRQTL
                     ANVDRFLAEAGSDKSKILSVTIYLKDMAAGYAGLNEVWDAWVAEGASPARACVEAKLY
                     DPRVLVEMTVVAAQN"
     gene            551..1639
                     /gene="alr"
                     /locus_tag="VLF16_09915"
     CDS             551..1639
                     /gene="alr"
                     /locus_tag="VLF16_09915"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008784 - alanine racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HSX71239.1"
                     /translation="MRPARALIDLEALRHNYRLAREISGAKALAVVKADAYGHGATRC
                     AQALAAEADGFAVACIEEALELRYAGIRQPILLLEGFFEESELSLIDQHQLWCVVHDA
                     WQVEAIERARLGRPLRVWLKVDSGMHRVGLHPAEYRDAHARLLASGKVDRVVLMSHFS
                     RADEPDSPRSAEQLALFNKARGDLRAEVSLRNSPAILGWPGLFQDQQASDWVRPGIML
                     YGATPFEQDQEQAARLRPVMTLESKIISVRELPAGEPVGYGARFVAERPTRVGVVAMG
                     YADGYPRHAETGTPVMVDGHASRLIGRVSMDMLTVDLTDLPGAGLGSRVELWGRNVSA
                     SAVAYGCGSIPYQLFCNVKRVPRLYSGA"
     gene            1743..2291
                     /locus_tag="VLF16_09920"
     CDS             1743..2291
                     /locus_tag="VLF16_09920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HSX71240.1"
                     /translation="MDVGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSI
                     SSLKKVLGGIPMSLVEFFSLDLEQDNQTQVVYRADELTDLSSGAVTMKLIGKAHPNRT
                     ITFLDETYPPGTDTGEEMLNHDGEEAGMLVEGRLELTVGNEVFVLEPGDSYYFDSTKP
                     HRFRNPFEGPARLISATTPANF"
     gene            2509..2931
                     /locus_tag="VLF16_09925"
     CDS             2509..2931
                     /locus_tag="VLF16_09925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012274807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HSX71241.1"
                     /translation="MNLIKKLLAAQAAVLALWAVSAQAATNDEIAERIKPVGEVCIQG
                     EECKGVGAVAVAASGGAKSPDDVIAAHCGACHNAGVLGAPKAGDTAAWQARADKEGGL
                     DGLLAKAISGINAMPPKGTCATCSDEELMGAIKKMSGL"
     gene            3047..5161
                     /locus_tag="VLF16_09930"
     CDS             3047..5161
                     /locus_tag="VLF16_09930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA hydrolase/transferase C-terminal
                     domain-containing protein"
                     /protein_id="HSX71242.1"
                     /translation="MPSRSLEQAVDEVLARIDGPIRLGLPLGLGKPNRFANALYQRIK
                     ALPQRQLIIYTALSLARPQPRSELEQRFSGPFLRRVYGDHVELDYLSDLRCGDLPANV
                     RIEEFYLQPASQLGNPLAQQSYISLNYSHVARDLQRKGINVIAQLVALDPRRPGHVSL
                     SCNPDITLDLLPGLRERRRAGETILCIAQPHAELPYMGGDAELPVGEFDLLLEPVERH
                     TLFSTPNLPVSLQDHAIGLHVSALVRDGGTLQLGIGAMADAAVAALLARQRDNARYRS
                     LLYAMDIPQRWGALVEREGGQEPFARGLYGCSEMFMHGLLALLEAGVIRRAAYPDAEL
                     QRLAECGGLDERGRLTGIGLAALDARSFVWLQRQGLLAAELRLDDQQLLLPDGRRLPA
                     DLSDPATFAALAPYLGEAHGAVLVHGGFFLGPQAFYQRLRELSDDLRRRIGMTAISRI
                     NRLYGDEPLKRLQRRDARFVNSCFVVTLLGASAADQLEDGRVLSGVGGQYDFVAQAHE
                     LEGGRSILMLRSWREDGGEVSSNIRWDYRHATIPRHLRDIVVTEYGIADLRGRSDAEV
                     IEALLRIADSRFQDELIAAAKQAGKLAEDFELAAEYRRNTPERLQALRIEFPELFAEY
                     PLGCDFSAEEQDLLRALQWLKSKLRLSEIFELGVAALFDLPDAADYAAHLQRMGLERP
                     EGLREQLYQKLLLAGLKATAAG"
     gene            complement(5488..>6977)
                     /locus_tag="VLF16_09935"
     CDS             complement(5488..>6977)
                     /locus_tag="VLF16_09935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HSX71243.1"
                     /translation="LKAYNAVDFNDLILLPVKLFQEHKDILEKWQNRIRYLLVDEYQD
                     TNASQYLLVKQLVGMRHQITVVGDDDQSIYAWRGARPENLMLLKEDYPSLKVVMLEQN
                     YRSTSRILKCANILIANNPHVFEKQLWSEMGNGDPIRVIRTRNEEAECERVALEILTE
                     HLRTERPYSDFAILYRGNYQAKLMELKLQHHQIPYRLSGGTSFFARQEVKDLMSYFRL
                     LVNPDDDNAFLRVINVPRREIGSATLEKLGNYASERKISMYAASDELGLAEHLDSRYT
                     ERLSRFKRYMDKIRELCAGNDPIGAIRSMVMDIDYENWLRQNASSDKVAEARMGNVWF
                     LVEALKNTLDKDEDGDMTVEDAIGKLVLRDMLERQQEEEEGAEGVQMMTMHASKGLEF
                     PSVYIIGFEEEILPHRSSIEADTIEEERRLAYVGITRAKRNLALTYASKRKQYGEIID
                     CSPSRFLDELPQEDLVWEGQEDAPAEVKSARGNDALANMRAMLKR"
BASE COUNT         1120 a         2361 c         2315 g         1181 t
ORIGIN      
        1 cggtactctt ggctggacca tggcctgcgg ctccggtcgc ttcctcgccg acctgatggc
       61 caagaagcgt ccgcagatca gcgccgaagg cctggacatt tcccgctacg gcaacaccaa
      121 ggagaaccac aagcatgccc atccagcgcc tgcgcattga gaagcgcctc agcgagatcg
      181 tcatccacaa cggcaccgtc tacctggcgg gccagcttgc cgacgattac gacggcgaca
      241 ttcgtgagca gacccgccag accctggcca acgtcgaccg cttcctggcc gaggccggca
      301 gcgacaagtc gaagatcctc tcggtgacca tctacctcaa ggacatggcc gccggttacg
      361 ccggcctcaa cgaggtctgg gacgcctggg tcgccgaggg tgcctccccg gcccgcgcct
      421 gcgtcgaggc caagctgtac gacccgcgcg tgctggtgga aatgacggtc gtagccgccc
      481 agaactgact cttccctgat tcgcccggca cccccgccgg gcttttttta atcgaacgaa
      541 agtagccgtc atgcgtcccg cccgtgccct gatcgacctc gaagccctgc gccacaacta
      601 ccgcctcgcc cgcgagatca gcggcgcgaa agccctggcg gtggtcaagg ccgatgccta
      661 cggccacggc gccacgcgct gcgcccaggc gctggcggcg gaggccgacg gcttcgccgt
      721 ggcgtgtatc gaagaggcgc tggagctgcg ctacgccggc atccgccagc ccattctgct
      781 gctcgagggt ttcttcgagg agagcgagct gagcctgatc gaccagcacc agctgtggtg
      841 cgtggtgcat gacgcctggc aggtcgaggc catcgagcgg gcgcgcctgg gtcggccgct
      901 gcgggtctgg ctgaaggtcg attcgggcat gcaccgggtc ggcctgcacc cggccgagta
      961 ccgcgacgcc catgcccgcc tgctggccag cggcaaggtc gacagggtcg tgctgatgag
     1021 ccacttctcc cgcgccgacg agccggacag cccgcgcagt gccgagcagc tggcgctgtt
     1081 caacaaggcg cgcggcgacc tacgggcgga agtcagcctg cgcaactcgc cggcgattct
     1141 cggctggccg gggctcttcc aggaccagca ggccagtgac tgggtgcgcc ccggcatcat
     1201 gctctacggc gccacgccct tcgagcagga ccaggagcag gccgcgcgcc tgcgcccggt
     1261 gatgacgctg gagtcgaaga tcatcagcgt gcgcgagctg ccggccggcg agccggtggg
     1321 ctatggcgcg cgcttcgtcg ccgaacgacc gacccgtgtt ggcgtggtcg ccatgggcta
     1381 tgccgacggc tacccgcgcc acgccgaaac cggcactccg gtaatggtcg atggccacgc
     1441 cagccggctg atcggccggg tgtccatgga catgctcacc gtcgacctca ccgatctgcc
     1501 gggtgccggc ctcggcagcc gggtcgagct gtgggggcgc aacgtctccg ccagtgccgt
     1561 ggcctacggg tgcggcagca tcccgtacca gctgttctgc aatgtcaaac gcgtgccgag
     1621 gctctattcc ggggcctagc cgccgcccca cggggcaatt gcatctgccg tgttgtaaat
     1681 actgaacact ggccgcatga taccgccacc caaatgcctt gctcccaagg aggacccccg
     1741 cattggacgt cggtgttcga ctgcaatcta tccgcaaact caaaggcctt tcccagcgtg
     1801 aactcgccaa gcgtgcgggc gtcaccaaca gcaccatttc gatgatcgag aagaacagcg
     1861 tgagcccctc gatcagctcg ttgaaaaagg tgctcggcgg gattcccatg tcgctggtgg
     1921 agttcttctc cctcgacctg gaacaggaca accagaccca ggtggtctac cgggccgacg
     1981 aactgaccga cctctccagc ggcgccgtga cgatgaaact gatcggcaag gcgcacccca
     2041 accgcaccat caccttcctt gacgagacct acccgccggg caccgatacc ggcgaggaaa
     2101 tgctcaacca cgacggcgaa gaggccggca tgctggtgga ggggcgcctg gagctgaccg
     2161 tgggcaacga ggtattcgtc ctcgaaccgg gcgacagcta ctacttcgac agcaccaagc
     2221 cgcaccgctt ccgcaacccg ttcgagggtc ccgcccggct gatcagcgca acaacgccgg
     2281 cgaatttcta aaaaatcggg taagtggcgg ctaattcgca agccgccagg tgccctcgac
     2341 atcccgcgtg gtgcgccgca aggcgccgag cgggacgttc gacccggccc gaaggtccaa
     2401 tgcccctgcg acaagttggg ttgttccggc cagcgggtct aaccgttata ctgcgcccgc
     2461 ccgcgaaacc gtggccgcgg gcgtgactag ccacaatgag ggtgtaccgt gaacctgatc
     2521 aagaagctgc tggcggccca ggctgccgta ttggccctgt gggctgtgag cgctcaggct
     2581 gcgaccaacg acgagatcgc cgagcgcatc aagccggtcg gcgaggtctg tatccagggt
     2641 gaagaatgca agggcgtcgg cgccgtcgcc gtcgctgcca gtggcggcgc caagtctccg
     2701 gacgatgtga tcgccgccca ctgcggcgcc tgccacaacg ccggcgtgct gggtgcgccg
     2761 aaggctggcg acaccgccgc ctggcaggcc cgtgccgaca aggaaggtgg tctcgacggc
     2821 ctgctggcca aggccatctc gggcatcaac gccatgccgc cgaaaggcac ctgcgccacc
     2881 tgctcggacg aagagctgat gggcgccatc aagaagatgt ccggcctctg atcgccggcg
     2941 tctctcgatg accgcaaggc cgccttcggg cggccttgtc gttttcgcct gagcaaaacc
     3001 gcagcgggac ggtccaacct ccgatgtcaa tcgaggagga agccgggtgc cgagtcgttc
     3061 gctggaacag gccgttgatg aagtactggc acggatcgac gggccgatcc gcctgggcct
     3121 gccgctcggg ctgggcaagc ccaaccggtt cgccaatgcg ctgtaccagc ggatcaaggc
     3181 gctgccgcag cgccagctga tcatctacac ggcgctgtcg ctggcccgtc cgcagccgcg
     3241 cagcgaactg gagcagcgct tcagcggccc cttcctgcgc cgggtctacg gcgaccatgt
     3301 cgaactcgac tatctctccg acctgcgctg cggcgacctg ccggccaacg tgcgcatcga
     3361 ggagttctac ctgcaaccgg ccagccagct gggcaatccc ctggcccaac agagctacat
     3421 cagcctgaac tacagccacg tcgcccgtga cctgcagcgt aagggcatca atgtcatcgc
     3481 ccagctggtg gcgctggacc cgcggcgccc ggggcatgtc agcctgagct gcaaccccga
     3541 catcactctc gacctgctgc ccggcctgcg cgagcgccgc cgcgccggcg agaccatcct
     3601 gtgcatcgcc cagccgcacg ccgagctgcc gtacatgggc ggcgatgccg aactgccggt
     3661 gggcgagttc gatctgttgc tggagccggt cgagcgccac accctgtttt ccacgcccaa
     3721 cctgccggtg agcctgcagg accatgccat cggcctgcac gtcagcgcgc tggtgcgcga
     3781 cggcggcacc ctgcagctcg gcatcggcgc catggccgac gccgcggtgg cggcgctgct
     3841 ggcgcggcag cgggacaacg cgcgctatcg cagcctgctg tacgccatgg acattcccca
     3901 gcgctggggc gcgctggtcg agcgcgaggg cggccaggag cccttcgccc gtgggctcta
     3961 cggctgcagc gagatgttca tgcatggcct gctggccctg ctcgaggccg gggtgatccg
     4021 ccgcgcggcc tacccggatg cggagctgca gcgactggcc gaatgcggcg ggctggacga
     4081 gcgtgggcgc ctgaccggca tcggcctcgc tgcgctcgat gcgcgcagct tcgtctggtt
     4141 gcagcgccag ggcctgctcg ccgccgaact gcgcctggac gaccagcagt tgctgctgcc
     4201 ggacgggcgc cggctgcccg ccgacctgtc cgacccggcc accttcgccg cgctggcgcc
     4261 ctatctgggc gaggcgcatg gcgcggtgct ggtgcacggc ggtttcttcc tcggtccgca
     4321 ggcgttctat cagcgcctgc gcgagctgag tgacgacctg cgccggcgca tcggcatgac
     4381 cgccatcagc cgcatcaacc ggctgtacgg cgacgagccg ctcaagcgcc tgcagcgccg
     4441 cgacgcgcgc ttcgtcaaca gctgcttcgt ggtgacgctg ctcggtgcca gcgccgccga
     4501 ccagctggag gacggccgcg tgctcagcgg ggtcggcggg caatacgact tcgtcgccca
     4561 ggctcacgag ctggagggcg ggcgttcgat cctgatgctg cgcagctggc gcgaggacgg
     4621 cggcgaggtc agctcgaaca tccgctggga ttaccgccac gccaccattc cgcggcatct
     4681 gcgcgacatc gtggtgaccg agtacggcat cgccgacctg cggggccgta gcgatgccga
     4741 ggtgatcgag gcgctgctgc gcatcgccga ttcgcgcttc caggacgaac tcatcgccgc
     4801 cgccaagcag gccggcaagc tggcggagga tttcgagctg gccgccgaat accggcgcaa
     4861 cacgccggag cgtttgcagg cgctgcgcat cgagtttccc gagctgtttg ccgaataccc
     4921 gctgggctgc gacttcagcg ccgaggagca ggatctgctg cgcgccctgc agtggctgaa
     4981 gagcaagctc aggctcagcg agatattcga gctgggcgtg gccgcgctgt tcgacctgcc
     5041 ggacgccgcc gactatgcgg cgcacctgca gcgcatgggc ctggagcgcc ccgagggatt
     5101 gcgcgagcag ctctaccaga aactcctgct ggccggcctc aaggcgaccg cggcgggtta
     5161 accgcctcgc gggccgtaaa ggctatcggt gcgcatggcg cgccttgcgc aagccgcgtc
     5221 cttcaatgcc atcggtgcgt acggaggtat gggagtggga tgcggacgta gggtgcgcta
     5281 cgcgcaacgc ttgtcccgcc gaagccgatg gtgcgcatgg cgcaccctac gcaagccgcg
     5341 tccttcaatg ccatcggtgc gtacggaggg tatgggagtc gagatgcgga cgtagggtgc
     5401 gctgcgcgca ccgcatggtt ccccaccgac gccaagggtg cgcatggttc cagccaacgc
     5461 cgatggcgca cctggcaatg gtcccggtca gcgcttgagc atcgcccgca tattggccag
     5521 ggcgtcgttg ccgcgggcgc tctttacctc ggccggggcg tcttcctggc cttcccagac
     5581 caggtcctcc tgaggtagct cgtcgaggaa gcggctcggc gaacagtcga tgatttcgcc
     5641 gtactgcttg cgcttgctgg cgtaggtcag cgccaggttg cgcttggccc gggtgatgcc
     5701 gacgtaggcc aggcggcgtt cttcctcgat ggtgtcggcc tcgatactgg aacggtgcgg
     5761 gagaatctcc tcctcgaagc cgatgatgta caccgaggga aattccaggc ccttggaggc
     5821 gtgcatggtc atcatctgca cgccctcggc gccttcttcc tcttcctgct ggcgctccag
     5881 catgtcgcgc agcaccagct tgccgatggc gtcctcgacg gtcatgtcgc cgtcttcgtc
     5941 cttgtccagg gtgttcttca gcgcctcgac gaggaaccag acgttgccca tgcgcgcctc
     6001 ggcgaccttg tcgctggagg cgttctggcg cagccagttc tcgtagtcga tgtccatcac
     6061 catgctgcgg atggcgccaa tcggatcgtt gccggcgcac agctcgcgga tcttgtccat
     6121 gtagcgcttg aagcgcgaca ggcgctcggt gtagcggctg tccaggtgct cggccaggcc
     6181 cagctcgtcg ctggcggcgt acatgctgat cttgcgctcg ctggcgtagt tgccgagttt
     6241 ctccagggtg gcggagccga tctcccggcg cggcacgttg atcacccgca ggaaggcgtt
     6301 gtcgtcgtcc gggttgacca gcaggcggaa gtagctcatc aggtccttca cctcctggcg
     6361 ggcgaagaag ctggtgccgc cggacaggcg ataggggatc tggtggtgct gcagcttcag
     6421 ctccatcagc ttggcctggt agttgccgcg gtagaggatg gcgaagtcgc tgtacgggcg
     6481 ctcggtgcgc aggtgctcgg tgaggatctc cagcgccacc cgctcgcact cggcctcctc
     6541 gttgcgcgtg cggatcaccc ggatcgggtc gccgttgccc atctccgacc acagctgctt
     6601 ctcgaacacg tgcgggttgt tggcgatgag gatgttggcg cacttgagga tgcggctggt
     6661 ggagcggtag ttctgctcca gcatcaccac cttcagcgag ggatagtcct ctttgagcag
     6721 catcaggttt tccggccgcg cgccgcgcca ggcgtagatc gactggtcat cgtcgccgac
     6781 cacggtgatc tggtggcgca tgccgaccag ctgcttcacc agcaggtact ggctggcgtt
     6841 ggtgtcctgg tactcgtcca ccagcaggta gcgaatgcgg ttctgccact tctccaggat
     6901 gtccttgtgc tcctggaaca gcttcaccgg cagcaggatc aggtcgttga agtccaccgc
     6961 gttgtacgct tttagcg
//
LOCUS       DATIHC010000599         2832 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17157, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000599 DATIHC010000000
VERSION     DATIHC010000599.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2832
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17157"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            88..393
                     /locus_tag="VLF16_09940"
     CDS             88..393
                     /locus_tag="VLF16_09940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010489576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide pyrophosphohydrolase"
                     /protein_id="HSX71244.1"
                     /translation="MDIAELTRRLHAIRDHNDWRRFHSPKNLAMAASVEMAELVEIFQ
                     WLSEDESRRLSAEQLEHAGQEVGDIVLYLLLLCAEAGIDMEQAVRAKLADSERRFAS"
     gene            536..1303
                     /locus_tag="VLF16_09945"
     CDS             536..1303
                     /locus_tag="VLF16_09945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008153735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HSX71245.1"
                     /translation="MTDRHFDELATRFAEKIYGGAKGAIRLAVLQADLKDALPERPLR
                     VLDVGAGLGHMSLWLAQRGHAVTLTEPAEPMLEGARQRFAEAGVEARFIQAPWQDLLG
                     QLTEPYDLVICHAVLEWLAEPHTILPVLHQLTAPGGWLSLAFYNKDALVYRNLLKGHF
                     RKLRKERFAGEGQSLTPQKPLDPRELAAQLDDHWQVESQSGVRVFHDYMPSEFQAKAE
                     LTDLLEMELAHRRHPSFAGLGRYLHWICRPLQHEMTR"
     gene            1472..2065
                     /locus_tag="VLF16_09950"
     CDS             1472..2065
                     /locus_tag="VLF16_09950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007914627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4136 domain-containing protein"
                     /protein_id="HSX71246.1"
                     /translation="MKALVALPLLLLLAACQSDNPYVAGGQPLPPAPPGAADHFDRSA
                     YPAAPRDFARYRDWSWRQQPAGSAWADGALVAEVVGGSLDQRGLRPARDGKAADLRVS
                     ASLRLERRQYQVRDDYGSYYGNGPYGDHYGMYGSVPLVRTYEVEVAVVHIDLFDGASG
                     QPVWSGSAEARSEGSQSERSEALRRAVEDALAAYPPG"
     gene            2129..2689
                     /locus_tag="VLF16_09955"
     CDS             2129..2689
                     /locus_tag="VLF16_09955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4136 domain-containing protein"
                     /protein_id="HSX71247.1"
                     /translation="MSPRLLLIPFLLILAACQTSRVERDFDASRDFAAYRSWSWQAPA
                     LQYRPDDPRIKSDLTEQRIRDAVGQQLDQRGLRPAQAGGSADLKVQAWLIVDQRQDQV
                     STNYGGYWGGYWGGYWGGPMYTETRTVDYKVATIQIDLFDGKDGKLVWRGSAEQIMRQ
                     SPPSPSERETAIRETVAQVLAQYPPQ"
BASE COUNT          473 a         1028 c          942 g          389 t
ORIGIN      
        1 acccaccacc tcgccatcga gcccccgacg ccaggcttgc cctccccctt cgtccgaccc
       61 aagctatgcg gcccgaagga gagccccatg gacatcgccg aactcacccg ccgcctgcac
      121 gcgatccgcg accacaacga ctggcgccgt ttccacagcc cgaagaacct ggctatggcc
      181 gccagcgtag agatggccga gctggtggag atcttccagt ggctgagcga agacgagtcc
      241 cggcgcctct ccgccgagca gctggaacac gccggccagg aggtcggcga catcgtgctc
      301 tatctcctgc tgctctgcgc cgaggccggc atcgacatgg aacaggcggt gcgcgccaag
      361 ctggccgaca gcgagcggcg cttcgcgtcg tgagaatgcc tgcaagagcg tcgcgagcgg
      421 ctcgagagcg agggggccgc gcagtgacaa gcgaggctgt acagccgagt acggcgagct
      481 tggagcaagc ggccgacgac gctatcgtgc cgcgcagcag ctattggagg cattcttgac
      541 tgaccgacac ttcgacgaac tggccacccg cttcgccgag aagatctatg gcggcgccaa
      601 gggcgccatc cgcctggcgg tgctccaggc cgatctgaag gacgcgctgc cggagcgccc
      661 gctgcgcgtg ctggacgtgg gcgccggcct cggccacatg agcctgtggc tggcccagcg
      721 cggccacgcg gtgaccctga ccgaaccggc cgaaccgatg ctcgaaggcg cgcgccagcg
      781 cttcgccgag gcgggcgtgg aggcacggtt catccaggcc ccgtggcagg acctgctcgg
      841 ccagctcacc gagccatacg acctggtgat ctgccacgcg gtgctggaat ggctggccga
      901 gccccacacc attctgccgg tgctgcacca gctcaccgcg ccgggcggct ggctgtcgct
      961 ggccttctac aacaaggacg cgctggtcta ccgcaacctg ctcaagggcc acttccgcaa
     1021 actgcgcaag gagcgcttcg ccggtgaagg ccagagcctg accccgcaga agccgctgga
     1081 cccgcgcgaa ctggcggcgc aactcgacga ccactggcag gtcgaaagcc agagcggcgt
     1141 acgcgtgttc cacgactaca tgccgagcga gttccaggcc aaggccgaac tgaccgacct
     1201 gctggagatg gaactggcgc accggcgcca tccgagcttc gccggcctcg gacgctacct
     1261 gcactggatc tgccggccgt tgcaacacga gatgactcgc tagcccagat gcaatccggg
     1321 aatgcggagc cccgccccgg attgccatcc gggctacgct gctggatctg ccggcccttg
     1381 tagcccggat gcaatccggg aatgaatcgc ccgcctcccg gattgcgtcc gggctacgct
     1441 cagccaactt ccgcatgttc cgggagccat catgaaagcc ttagttgccc tgccactgct
     1501 cctgctgctc gccgcctgcc agagcgacaa cccctacgtc gccggcggcc agccgctgcc
     1561 gccggcaccg cccggcgcgg ccgaccactt cgaccgcagc gcctatccgg ccgccccgcg
     1621 cgacttcgcc cgttaccgcg actggagctg gcgccagcag ccggccggca gtgcctgggc
     1681 cgatggcgcc ctggtggcgg aggtggtggg cggcagcctg gaccagcgcg gcctgcgccc
     1741 ggcacgcgac ggcaaggccg ccgacctgcg cgtgagcgcc tcgctgcgcc tggagcggcg
     1801 ccagtaccag gtccgcgacg actacggcag ctactacggc aacggcccct acggcgacca
     1861 ttacggcatg tacggcagcg tgccgctggt gcgcacctat gaggtggagg tagccgtggt
     1921 gcacatcgac ctgttcgacg gcgccagcgg ccagccggtg tggagcggca gcgccgaggc
     1981 gcgcagcgaa ggcagccaga gcgagcgcag cgaggccctg cgccgcgccg tggaagatgc
     2041 cctggcggcc tacccgccgg gctgagccat ggcttgccga tccggccgaa ctggagttgg
     2101 atagaggctc tatcacggag gtttcaccat gtccccgcgc ctgttgctga tcccgttcct
     2161 gctgatcctc gccgcctgcc agacgtcgcg cgtcgagcgc gatttcgacg ccagccgcga
     2221 cttcgccgcc taccgcagct ggagctggca ggcgcccgcc ctgcagtacc gcccggacga
     2281 tccgcggatc aagagcgacc tcaccgagca gcgcatccgc gacgccgtcg gccagcagct
     2341 cgaccagcgc ggcctgcgtc cggcccaggc cggcggcagc gccgacctca aggtgcaggc
     2401 ctggttgatc gtcgaccagc gccaggacca ggtcagcacc aactacggcg gctattgggg
     2461 cggttactgg ggtggctatt ggggcgggcc gatgtacacc gagacccgca cggtggacta
     2521 caaggtggcc accatccaga tcgacctgtt cgacggcaag gacggcaagc tggtctggcg
     2581 cggcagcgcc gagcagatca tgcgtcagtc gccgccgagc ccgagcgagc gcgaaacggc
     2641 gatccgcgag accgtggccc aggtgctggc ccagtacccg ccacaatgag cacacccggg
     2701 ctcgatcacc ggccggcact ggccgatgac ctcgacgagg tgctgcgctt cgcgagcagc
     2761 gccgacgaac tcttctatgc ctttccccgc gccgactggc cgctgacccg cgagcagctg
     2821 gcggcggccc ac
//
LOCUS       DATIHC010000600         4029 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36722, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000600 DATIHC010000000
VERSION     DATIHC010000600.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4029
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36722"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1113
                     /gene="uvrC"
                     /locus_tag="VLF16_09960"
     CDS             <1..1113
                     /gene="uvrC"
                     /locus_tag="VLF16_09960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HSX71248.1"
                     /translation="VQDQQSMEGGTGDVDVVAAMVNPGGACVHLISVRGGRVLGSKNF
                     FPQVGIEEEGGAVLSAFIAQYYLSNHERDLPGELIVNVTHEDLPTVATAIAELRGRDI
                     AISHRVRGTRARWQQLAVTNAEQALSARLANRQHVAARFDALAEALDLDEPPQRLECY
                     DISHSSGEATVASCVVFGPEGPLKSDYRRYNIEGVTAGDDYAAMHQALTRRFSKLKEG
                     EGKLPDILLVDGGKGQLAMAREVLQELAVPDLILLGVAKGVTRKPGLETLYLNDADHE
                     FTLPADSPALHLIQQIRDEAHRFAITGHRARRGKARRTSSLEEVAGIGPKRRRELLKH
                     FGGLQELNRASVEEIAKAPGISKKLAETIYAALHSE"
     gene            1147..1707
                     /gene="pgsA"
                     /locus_tag="VLF16_09965"
     CDS             1147..1707
                     /gene="pgsA"
                     /locus_tag="VLF16_09965"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008444 -
                     CDP-diacylglycerol-glycerol-3-phosphate
                     3-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HSX71249.1"
                     /translation="MNIPNLLTVLRVALIPVFILFFYLPFAWSYWAASAVFALAAVTD
                     WFDGYLARRWEQSTPFGAFLDPVADKLMVAVALVLLVEEHANLWLSLPAVIIIGREIV
                     VSALREWMAELGARAHVAVSNLGKWKTAAQMVALVILLGNPPQLTAWVGLGYVLLIVA
                     AALTLWSMMQYLLAAWPHLSIDTEKK"
     gene            1773..1848
                     /locus_tag="VLF16_09970"
     tRNA            1773..1848
                     /locus_tag="VLF16_09970"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1806..1808,aa:Gly,seq:gcc)
     gene            1892..1965
                     /locus_tag="VLF16_09975"
     tRNA            1892..1965
                     /locus_tag="VLF16_09975"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1924..1926,aa:Cys,seq:gca)
     gene            2090..2176
                     /locus_tag="VLF16_09980"
     tRNA            2090..2176
                     /locus_tag="VLF16_09980"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2124..2126,aa:Leu,seq:taa)
     gene            2550..2960
                     /locus_tag="VLF16_09985"
     CDS             2550..2960
                     /locus_tag="VLF16_09985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008071485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HSX71250.1"
                     /translation="MSIPFWCVFIAALLIYVAKLPVARAMKADSGGYDNHNPREQQAR
                     LRGFGARAHAAHLNSVEIFPLFAAGVLMAHTTDVFGWWVDLLAILFIVSRVLYLLFYW
                     RDLAWQRSMVWTVGLVCCLLLMLSPFFRWLMIQP"
     gene            complement(3006..3296)
                     /locus_tag="VLF16_09990"
     CDS             complement(3006..3296)
                     /locus_tag="VLF16_09990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013715391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71251.1"
                     /translation="MNKPFSYALLLALSLGLAACEKTPEDKTESAKENVSEAMESLGD
                     AAEDGGEAVEQKVDRATGNEPTAGERLDEAAEDTGEAIQDAGDEAKDAVDGQ"
     gene            complement(3412..3681)
                     /locus_tag="VLF16_09995"
     CDS             complement(3412..3681)
                     /locus_tag="VLF16_09995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019437947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71252.1"
                     /translation="MRKPFAYALMLTATLGLAACDNAAEDRAEDARDAQEDARESMND
                     AQESMNEAAEQRQEAAEERAEENNQPAPPAMPTPPPAPAGQQPQQ"
     gene            3824..>4029
                     /locus_tag="VLF16_10000"
     CDS             3824..>4029
                     /locus_tag="VLF16_10000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase"
                     /protein_id="HSX71253.1"
                     /translation="MSDNPVLERAQRFLAALRHCQVLGMAVHEAAAEGLTLRLPYSTR
                     IIGNPESGVIHGGAITTLMDTTCG"
BASE COUNT          651 a         1239 c         1344 g          795 t
ORIGIN      
        1 gtgcaggacc agcagagcat ggagggcggt acgggcgacg tggacgtggt ggccgcgatg
       61 gtcaacccgg gcggcgcctg cgttcacctg atcagcgtgc gtggcgggcg ggtattgggc
      121 agcaagaact tctttcccca ggtgggcatc gaggaggagg gcggcgcggt gctctcggcg
      181 ttcatcgcgc agtattacct gtccaatcac gagcgcgatc tgccgggcga gctgatcgtc
      241 aacgtgaccc atgaagatct gccgacggtg gcgaccgcca tcgccgagct tcggggtcgc
      301 gacatcgcca tcagtcatcg ggtgcgcggt actcgcgcgc gctggcagca gttggcggtg
      361 accaacgccg agcaggctct gagtgcgcgg ctggccaacc ggcagcacgt cgccgcgcgt
      421 ttcgatgcac tggccgaggc gcttgacctg gacgagccgc cacagcggct ggagtgctac
      481 gacatcagcc actccagcgg cgaggcaacg gtggcctcct gcgtcgtgtt cggcccggaa
      541 ggcccgctga aatccgacta tcgccgctac aacatcgagg gcgtcaccgc cggtgacgac
      601 tacgcggcca tgcatcaggc gctgacccga cgcttcagca agctcaagga gggcgagggc
      661 aagctgccgg acatcctcct ggtggacggc ggcaagggcc agctcgcgat ggcccgagag
      721 gtgctgcagg agctggcggt gccggacctg atcctgctcg gcgtggccaa gggcgtgacc
      781 cgcaagcccg gcctcgaaac cctctacctc aacgacgccg atcacgagtt caccctgccg
      841 gccgactcgc cggcgctgca cctgatccag cagatccgcg acgaggcgca ccgcttcgcc
      901 atcaccggcc accgggcccg gcgcggcaag gcgcgacgca cctccagcct cgaggaagtg
      961 gccggcatcg ggccgaagcg cagacgcgag ctgctcaaac acttcggcgg actgcaggag
     1021 ctcaatcgcg ccagcgtcga ggagatcgcc aaggcgccgg gcatcagcaa aaagctggcc
     1081 gagacaattt atgcggccct gcacagcgag tagaatgcgc gttcaactcg ctggccagtg
     1141 gtcccgatga acatccccaa tctgctcacc gtactgcgcg tcgccctgat tccggtcttc
     1201 atcctgttct tctatctgcc gttcgcctgg agttactggg ccgccagcgc ggtgttcgcc
     1261 ctggcagcgg tgaccgactg gttcgacggc tatctggcgc gtcgttggga gcagagcacg
     1321 ccattcggcg cgttcctcga tccggtggcc gacaagctga tggtggcggt ggcgctggtg
     1381 ctgctggtgg aggagcacgc caacctgtgg ctgagcctgc cggcggtgat catcatcggg
     1441 cgcgagatcg tggtgtccgc tctgcgcgag tggatggccg agctgggcgc gcgggcccat
     1501 gtggcggtgt ccaatctcgg caagtggaag accgcggcgc agatggtggc gctggtcatc
     1561 ttgctgggta atccgccgca gcttaccgcc tgggtcggcc tgggttacgt gctgctgatc
     1621 gtcgccgcgg cgctcactct gtggtcgatg atgcagtatc tgctggccgc ttggccgcac
     1681 ctcagcatcg acaccgaaaa gaaataagct tttttgaatc aaggggttga cgcggcgttt
     1741 cgaatctata gaatggcgcc cgtcaccacg acgcgggaat agctcagttg gtagagcacg
     1801 accttgccaa ggtcggggtc gcgagttcga gtctcgtttc ccgctccaga ttgttgacgt
     1861 tgacgccgct gtaagcggcg tcttcgtttg aggccgggtg gcagagtggt catgcagcgg
     1921 attgcaaatc cgtgtacgcc ggttcgattc cgacctcggc ctccactaca aggaaagccc
     1981 cgtagatcat tgatctacgg ggctttttct ttgttggccg ggcatgctgg cgaccttgcc
     2041 gggccggcat gggctgtata tagtccagcc ctcgcttcac agcgctaccg cccgaatggc
     2101 gaaatcggta gacgcaggag acttaaaatc tctcgccagc aatggcgtgc cggttcgagt
     2161 ccggcttcgg gcaccatctt ccatgcggct ttcggcgacc agctaggtcg aggccgactt
     2221 ccgcaattcc tgatctttcc cgcaactccc accgaggcgg cacagttcgt tgccgttgcg
     2281 tctcggtgtg ctctgaattc agctgcccca ggaggcagaa aaaagaaacc cggcgcgaag
     2341 gccgggctag atggggtatg gagtatcacg ctgatactgt gcgctgcgcg atgtgaaaag
     2401 agcgtgaaga cttttaccgc ctgtcggcac tcatggtcgc tattcaactg caacccaggt
     2461 caagccagac ggctccaagt ggaatggtgc ctgtccaggc gctgtgctac agctgatgta
     2521 acggctcaat ggccataagg agagaagcaa tgagcatccc gttctggtgc gtattcatcg
     2581 cggcgttgtt gatctatgtc gccaagctgc ccgtcgctcg cgccatgaag gccgactcgg
     2641 gtggatatga caaccacaac cctcgtgagc agcaggcgcg gcttcggggt ttcggtgcca
     2701 gggcgcatgc cgcccatctg aacagtgtcg agatcttccc gctgttcgcc gccggtgtgc
     2761 tgatggccca caccacggat gtgttcggct ggtgggtgga tctgctggcg attctgttca
     2821 tcgtcagccg tgtgctttat ctgctgttct actggcgcga tctggcctgg cagcgctcga
     2881 tggtgtggac ggtcggtctg gtgtgctgtc tgttgctgat gctcagcccg ttcttccgct
     2941 ggctaatgat tcagccgtaa cgaacaaggc ccgcaaaagc gggccttgac gtttctgggc
     3001 ggggctcact ggccgtcgac ggcgtccttg gcctcgtcgc ccgcatcctg gatggcttcg
     3061 ccggtgtcct cggcggcctc atccaggcgc tcgccggcgg tgggctcgtt tccggtggcg
     3121 cgatcgacct tctgctcgac ggcctcgccg ccatcttctg cggcatcacc cagcgactcc
     3181 atggcttcgg agacgttctc cttggccgat tccgtcttgt cttccggggt tttctcgcag
     3241 gcggcgagac cgaggctcag ggcgaggagc agggcatagg aaaagggctt gttcacgttt
     3301 tgattctcct tgtcgatgcg gacgccagcg atgtgcatcc gtaccgcttg gagcgaagcg
     3361 agagcggcga agttccgatg cctgcacggg gcaggcaccg gtaacctgcg cttactgctg
     3421 cggctgctgg ccggccgggg cgggcggcgg ggtcggcatg gcgggtggag ccggctggtt
     3481 gttctcttcg gcgcgctcct cggcggcctc ctgacgttgc tcggcggctt cgttcatcga
     3541 ctcctgagcg tcgttcatcg actcacgggc gtcttcctga gcatcgcggg cgtcctcggc
     3601 gcgatcttcg gcagcattgt cacaggcggc caggccgagg gtggcggtga gcatcagtgc
     3661 ataggcgaat ggtttgcgca tgggcgattt ctcctcgtgg gtaggaccat cgatgtttcg
     3721 aggctcagcc aggcgggaag gttccgactg ttttagccgc ggctgtaacc cgggcgggcg
     3781 cggcgctatc atgctgggct tttgcatcgc ccgaggagtg acgatgagcg ataaccccgt
     3841 gctcgaacgc gcccagcgtt tcctggcggc cctgcgccac tgccaggtcc tgggtatggc
     3901 cgtccatgaa gccgcggccg aggggctgac cctgcgcctg ccctacagca ctcggatcat
     3961 cggcaatccg gagtccgggg tgattcacgg cggcgccatc accacgctga tggacaccac
     4021 ctgcggcat
//
LOCUS       DATIHC010000601         1718 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_32109, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000601 DATIHC010000000
VERSION     DATIHC010000601.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32109"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..321
                     /locus_tag="VLF16_10005"
     CDS             <1..321
                     /locus_tag="VLF16_10005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71254.1"
                     /translation="LSAQEIQESLQRRLQIFSPTGNALWLRLYDARPLLRAHQAGQAF
                     PPGFWHGITSVWLQGLGNPFAAWHNPSPLDDAAPADLGITPQITLDWPLLQALANTEM
                     EIRV"
     gene            318..>1718
                     /locus_tag="VLF16_10010"
     CDS             318..>1718
                     /locus_tag="VLF16_10010"
                     /inference="COORDINATES: protein motif:HMM:NF042700.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin VasX"
                     /protein_id="HSX71255.1"
                     /translation="MTQLINPMDTYPYPVPAAQCPLLVAVLPLRYAIGPDRGFEASTL
                     NLPPLDGPFPTLDTLHKIAPSAELSYTRRLLRDGWLYLWMAEQRRLIEYRISGFLLTQ
                     TRRGGAVVDTRQLPYITLPAGTLANLAWSPEQWNDEQFQAVKTKPAVRQRVMRDFIPG
                     AGLNSGLTGGSAPKETLQVGDYMSPDSYSWSCVPDTNKRPDWIKTHFAMGHCEQQAWV
                     AVDDPWGVILDLAALLRTRKKSFDEFRRQRGEDWAMANVLHSMQISDQQLAGKMREIT
                     DYPRLEQTRQEQDREEQRYDEDIRRLSRIWAAWLDTLRGRGVATLDTACGNFDITNPA
                     SRDALEQHFALACLGPADTPAGIKAISVALAPGAPPARPWLLWSLLGLAQRLGPGELK
                     QLLDSAEQLKGNLPGAAEASAQLSRALTLSAALNTAADRLARHTPARAQEPLFAAIAP
                     VAASQARKLPDSADDLL"
BASE COUNT          355 a          598 c          472 g          293 t
ORIGIN      
        1 ctttcagctc aagaaataca ggagtccctc caacgccgcc tgcagatttt cagtccaaca
       61 ggcaatgcac tttggctccg cctgtacgac gcccgcccac tactccgcgc acatcaggcc
      121 gggcaagcct ttccgcctgg attctggcat ggcatcacct cggtttggct tcaagggcta
      181 ggcaacccct ttgctgcctg gcacaaccct tcccccctcg acgatgcagc accggcagac
      241 ctaggcatca caccgcaaat cactctggac tggccgctgc tacaagccct ggccaacacg
      301 gaaatggaaa tccgcgtatg acccagctca tcaaccccat ggacacctac ccctaccctg
      361 taccggccgc ccaatgcccg ctgctggtag cggttctgcc actgcgctac gccatcggtc
      421 cggatcgtgg cttcgaagct tccactctca acctgccccc actggatggg ccattcccta
      481 ccctcgacac actgcacaaa attgcccctt cggccgaact cagctatacc cggcgcctgt
      541 tgcgcgatgg ctggctgtac ctgtggatgg ccgaacagcg gcgcctgatc gaatatcgca
      601 tatcgggctt tcttctgacc cagaccaggc gcggaggcgc agtggtagat acgcgccagc
      661 tgccctatat cacgctaccg gcgggcaccc tggccaatct ggcttggtct cccgagcaat
      721 ggaacgacga gcagttccag gcggttaaga ccaaacctgc tgttcgccag cgagtgatgc
      781 gcgacttcat tccgggggca ggtcttaaca gtggccttac cggcggtagc gcgccgaagg
      841 aaaccttgca ggtgggcgat tatatgagcc ctgacagcta cagctggagc tgtgtacccg
      901 acaccaacaa gcgtcccgac tggatcaaga cccacttcgc catgggccac tgcgagcagc
      961 aggcttgggt agcagtggat gacccctggg gggtcatcct cgatctagcc gccctactgc
     1021 gcacacgtaa aaaaagcttc gacgagttcc gccgccaacg cggcgaagac tgggctatgg
     1081 ccaacgtact gcacagcatg cagatcagtg atcagcaact ggctggcaaa atgcgcgaga
     1141 tcaccgacta cccgagactg gagcaaacca ggcaggaaca agacagggag gagcagcgct
     1201 acgacgagga catccgcagg ctcagccgaa tctgggcagc ctggctcgac accctgcggg
     1261 gtcgaggtgt agcaactctg gataccgcct gcggcaactt cgatataacc aaccccgcca
     1321 gccgcgacgc gctggagcaa cacttcgccc tggcttgcct gggtccggcc gacactccag
     1381 ccggcatcaa ggccatatcc gtcgccctgg ctccgggtgc cccccctgcc aggccctggt
     1441 tactctggag tctgctgggg cttgctcaac gcctgggccc cggcgagctc aagcagttac
     1501 tcgacagcgc ggaacagctc aagggcaacc tgccgggcgc cgccgaggcc agtgctcaac
     1561 taagcagagc actgacgctg agcgctgcat taaacaccgc cgctgatcgc ctggcccgcc
     1621 atacgccggc ccgcgctcag gaaccgctat tcgccgctat cgccccagtc gccgccagcc
     1681 aggcacgcaa acttccggat agtgcggacg acctgctc
//
LOCUS       DATIHC010000602         2164 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13234, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000602 DATIHC010000000
VERSION     DATIHC010000602.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2164
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13234"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(74..601)
                     /locus_tag="VLF16_10015"
     CDS             complement(74..601)
                     /locus_tag="VLF16_10015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016494946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HSX71256.1"
                     /translation="MAISEREAAHRAASDVERVAWVDEQDRLLGGLPRAELRERGLIG
                     RASFILLFNTRGELCVHRRTLSKALYPGYWDVAAGGMVDEGESYADCAARELAEELGI
                     AGVPLREHGRFLFDEPGNRLWGAVFSAVSDAPLVLQPEEVLEARFLPADRALAEATPC
                     CPDSLQALRLYLADR"
     gene            complement(601..1674)
                     /locus_tag="VLF16_10020"
     CDS             complement(601..1674)
                     /locus_tag="VLF16_10020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2333 family protein"
                     /protein_id="HSX71257.1"
                     /translation="MLDWKNRADAPRGGNTNDSADGVRSYFAGGWVGKTLGTLLGLYL
                     LAALLVGWYWSGEPALFPVQQHAQASAEQAQRKLVSGYTTVETLKRVSETLLTKPGGY
                     LSNDIAPPGLWLDNMPSWEYGVLVQVRDLSRALRKDFARSQSQSTEDPDLARAEPRFN
                     FDNKSWALPASEAEYRAGIHSLDRYLAHLTSGDQSRTQFYARADNLNNWLGDVATRLG
                     SLSQRLSASVGRVRLNTDLEPNQPVPDGQVVPVREEEVKTPWLQIDNVFYEARGQAWA
                     LSHFLRAVEVDFADVLAKKNATVSVRQIIRELEAAQETLWSPMVLNGSGYGVLANHSL
                     VMANYISRANAAIIDLRTLLSQG"
     gene            1914..>2164
                     /locus_tag="VLF16_10025"
     CDS             1914..>2164
                     /locus_tag="VLF16_10025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011059044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase response regulator"
                     /protein_id="HSX71258.1"
                     /translation="MTEHEDPSRDRLKQHFAKRVIYQARQVLEVWQRLQQEEWSASVM
                     AELVETNLGLLRYAERFEQDLHIQLARSVGQCLEAVEANR"
BASE COUNT          367 a          744 c          709 g          344 t
ORIGIN      
        1 acatgcccat tgcctgcccg ccctatacct aatccgcctc gccagcgcat caggccatcc
       61 atgaggctga ggctcaacgg tcggccaggt agagcctgag cgcttgcagc gagtccgggc
      121 agcagggtgt cgcctcggcc agggcgcggt ccgctggcag gaagcgcgcc tcaagcactt
      181 cctccggctg cagcaccagc ggcgcgtcgg acaccgcgga aaacaccgcg ccccacaggc
      241 gattgcccgg ctcgtcgaag aggaagcggc catgctcgcg caacggcacg ccagcgatgc
      301 ccagttcctc ggccagctcg cgggcggcgc agtcggcgta gctctcgccc tcatcgacca
      361 tgccgccggc agccacgtcc cagtagccgg gatagagcgc cttgctcagg gtgcgacggt
      421 gcacgcacag ctcgccgcgg gtgttgaaca gcaggatgaa gctggcgcgg ccgatcagcc
      481 cacgctcgcg cagctccgcg cgcggcaggc cgccgagcag gcggtcctgc tcgtcgaccc
      541 aggccacccg ctcgacgtcg gaggcggcac ggtgcgccgc ctcgcgctcg ctaatggcca
      601 tcagccctgg ctcagcaggg tacgcaggtc gatgatcgcg gcgttggcgc gggagatgta
      661 gttggccatc accagcgagt ggttggccag cacgccataa ccgctgccat tgagcaccat
      721 cgggctccac agggtttcct gggccgcttc cagctcgcgg atgatctgtc gcacgctgac
      781 ggtggcgttc ttcttcgcca gcacatcggc gaaatcgacc tccaccgcgc gcaggaagtg
      841 cgacagcgcc caggcctggc cgcgggcctc gtagaacacg ttgtcgatct gcagccaggg
      901 ggtcttcacc tcctcctcgc gcaccggcac cacctggccg tcgggcaccg gctggttagg
      961 ttcgaggtcg gtgttcagac gtacccggcc gacgctggcc gacaggcgct gggacagcga
     1021 acccaggcgg gtcgccacgt cgcccagcca gttgttcagg ttgtcggcac gggcgtagaa
     1081 ctgggtgcgc gactggtcgc cgctggtgag atgggccagg tagcggtcca gcgagtgaat
     1141 gcccgcgcgg tactcggcct cggaggccgg cagcgcccag ctcttgttgt cgaagttgaa
     1201 gcgcggctcg gccctggcca ggtccgggtc ctcggtggac tgcgactggg agcgggcgaa
     1261 gtccttgcgc aacgcccgcg acaggtcgcg cacctgcacc agcacgccgt actcccagga
     1321 cggcatgttg tccagccaca ggccgggcgg ggcgatgtcg ttggagaggt agccgccggg
     1381 cttggtcaac agcgtctcgg acacccgctt cagcgtttcc accgtggtgt agccactgac
     1441 cagcttgcgc tgcgcctgct ccgccgaggc ctgagcatgc tgctgcaccg ggaaaagtgc
     1501 cggctcgccg ctccagtacc agcccaccag cagcgcggcc agcagataca gccccagcag
     1561 cgttcccagc gtcttgccca cccagccgcc agcgaaatag ctgcgaacgc cgtccgccga
     1621 gtcgttggtg ttgccgccac gcggcgcgtc cgcgcgattt ttccagtcca gcatgatctt
     1681 ggtccttgct tgcgtgttcg cctgatccga cctcatccgc ggcagatcgt tgacctgcac
     1741 tataagtgaa cccccagggc aacgcaggtg ccgaatgcga tacagggcgt cgattcggcc
     1801 aaaagctgga aatttggcgt caaatgaccg aaggttgttt tcagggcaat cactggtggt
     1861 agcatcacgc catcatccag ccttccaggc tgagcaacgt tcagatgtcc atcatgaccg
     1921 agcacgaaga ccccagccgc gaccggctca agcaacactt cgccaagcgc gtgatctacc
     1981 aggcgcggca ggttctggaa gtgtggcagc gcctgcagca ggaggagtgg agcgccagcg
     2041 tgatggccga gctggtcgag accaacctgg gcctgctgcg ctacgccgaa cgcttcgagc
     2101 aggacctgca catccagctg gcccgctccg tcggccagtg cctggaagcg gtcgaggcca
     2161 accg
//
LOCUS       DATIHC010000603         5199 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_10976, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000603 DATIHC010000000
VERSION     DATIHC010000603.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5199)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5199)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5199
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10976"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            84..893
                     /locus_tag="VLF16_10030"
     CDS             84..893
                     /locus_tag="VLF16_10030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71259.1"
                     /translation="MFPQLTTVFLALLIWACGAQAGSGARMFYDEPFYAQYIVDYWRA
                     PRDTSRLTPGWYPDKPFGGGGPTSGPGVAEIRGKLLRLQGELMKHPLLKDPHGFSSTV
                     GGAMGPVRGGPMPIPAVGEVSLGAYPLNPNDKRTQRMPNGRYRTPGDATMLVLRANEL
                     EDLVHRKPIGRWNDIAMVERRGGYMLVLNNSGRPLYLADPDYGYRLNPQLIDRSRPAG
                     EIQFLTVSVTGEWRGMPQKQLEPADTLGRMIGVLFLTDWKALLRQVEPSLR"
     gene            1013..2125
                     /locus_tag="VLF16_10035"
     CDS             1013..2125
                     /locus_tag="VLF16_10035"
                     /inference="COORDINATES: protein motif:HMM:TIGR02913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71260.1"
                     /translation="MKEVQYQVWSNSSALTARLLSAEPEFIGLERICGMAGDGYLRVT
                     AVSAEGQHVVGMYADPADALSLSAFVWTRAGGLQRLGGLNGGRYCSAEGISAYGRVVV
                     GTAEDGDAEGADRAFRWTRQGGMHDLGTLNFGRYSHAYACSADGLVVVGDAADGAVGH
                     ACRGFYWTFASGMRSLGVLNGGLTSHACAISANGRVIAGYADDGARDNARRAVRWTEQ
                     DGLRSLGTLNGGHYSTATAISADGSTIVGVASDGHAGEALRAFVWREETGMRSLGGLN
                     GGLVSRANGVSADGAVVVGVASDGDADDNERGFVWTAGGGMRCVESWLYEHSLAAEAV
                     PVVQVNGISADGQLLVGQLEGERAFIASVRPRWPLS"
     gene            2346..3032
                     /gene="creB"
                     /locus_tag="VLF16_10040"
     CDS             2346..3032
                     /gene="creB"
                     /locus_tag="VLF16_10040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator CreB"
                     /protein_id="HSX71261.1"
                     /translation="MPHILIVEDEAAIADTLVFALQSEGFTTTWLNLAEAALEFQQRT
                     PADLLILDVGLPDISGFEACKRLRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKP
                     FSPREVAARVRAILKRMAPRAAEPVVEAGGPFRVDAERVQIHYRGQLLVLTRHEFRLL
                     QALLAQPERVFAREQLLDALGVPADAGYERNIDSHIKSLRAKLRQVAADAEPIQTHRG
                     LGYSYSPKNA"
     gene            complement(3029..>5199)
                     /locus_tag="VLF16_10045"
     CDS             complement(3029..>5199)
                     /locus_tag="VLF16_10045"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSX71262.1"
                     /translation="PAQRYQRLDEMLRVFALDAEGRDLVADLLGLPLPEASPVREMPG
                     DLWRERMLDALLTILRANRQQPLLVVLEDAHWADSSTLQLFERLLREPEQRPLMLLIT
                     ARPEFAAQPWLEVGAQRLELPHLSAELARGMVAGLTDALDRGELQRVLAMADGVPLFI
                     EELAQWAASDGVRQGLPLTLNDLLMARIDLLGGARATAQLAAGIGREFHIELLEALHE
                     GDPAVLHGHLKDLLRSGLVNPGRQSTLYQFKHALIHQAAYLSQTRTQRRRSHARIADI
                     LRQRFPARAQHAPAQLAHHLAEAGLTSEAIPYWQRAAANARRISANREAAECLQRALA
                     CLAELPAGAERDALELELQLALGTVLNSADGYGASTTLAAFARAHALGTQVDDPELRF
                     RTLFGIWGGAGSEQTHDRVRELGQQVLEAARSTGRPVHLLIGQNCCLVGSFWGRPLQE
                     SRALAEAMIACCEPEARLECLRDYGEDPLVNARNYLLLGLWIAGQAERAQTVCHELLD
                     DVRAGGFANAVCYSLVFTSMLHFLRRDPQQVLAMAAETLDLSQRNGLQVWHDIADVMT
                     GWARVAQGDAGGMADIERGVVGNRQSMSSIEVTLGTLQLDALLRLGRHADLVREAERL
                     GEIAERRADRYLMPELLRLRAEALLALGREDEVTALLARSEELADYLGAGAWHLRLAM
                     TRLRWQPSEAHRGRLAELLNGLGAHVDPQDRADAEALLTG"
BASE COUNT          754 a         1819 c         1884 g          742 t
ORIGIN      
        1 gttccgccgg cgccgccttg ccggcgggac atgccggccg cccgtgcgat gccggcggcc
       61 cttttttccg atacgagcgc agcatgttcc cgcaactcac caccgtcttt ctcgcactgc
      121 tgatctgggc ctgtggcgcc caggccggca gcggcgcgcg catgttctac gacgagccgt
      181 tctacgccca gtacatcgtc gactactggc gggcgccgcg cgatacctcg cggctgacgc
      241 ccggctggta cccggacaag cccttcggtg gtggcggccc caccagcggc cccggcgtgg
      301 ccgagatccg cggcaagctg ctgcgcctgc agggcgagct gatgaagcat ccgctgctga
      361 aggacccgca cggcttcagc tcgacggtcg gtggcgccat gggcccggtc cgcggcggcc
      421 cgatgccgat cccggccgtc ggtgaagtga gcctcggcgc ctatccgctc aacccgaacg
      481 acaagcgcac ccagcgcatg ccgaacggcc gttaccgcac gccgggcgac gcgaccatgc
      541 tggtgctgcg ggccaacgaa ctggaggacc tggtgcaccg caagccgatc ggccgctgga
      601 acgacatcgc catggtcgag cgccgcggcg gctacatgct ggtgctgaac aacagcggcc
      661 ggccgctgta cctggccgac ccggactacg gctaccggct gaatccgcag ctgatcgacc
      721 gcagccgccc ggccggcgag atccagttcc tcaccgtcag cgtcaccggc gaatggcgcg
      781 gcatgccgca gaagcagctg gagccggccg acaccctcgg gcggatgatc ggcgtgctgt
      841 ttctcaccga ctggaaggcg ctgctgcgcc aggtcgagcc ctcgctgcgc tgagcgaacg
      901 ctgggcgaac gctgctgtgg aaaatgatcg atgcagacgg cgctcccgtg tcgggagagc
      961 tggaatgagg ggagcgccgt ctgcgctccc aagagatgaa gtggtgacaa ggatgaagga
     1021 agtgcagtac caggtctggt cgaacagctc cgcgctgacg gcccggctgc tctcggcgga
     1081 gcccgagttc ataggcttgg aacggatttg tggcatggcc ggcgatggct acctgcgggt
     1141 gaccgcggtg agcgccgaag gccagcatgt ggtcggcatg tatgccgacc cggccgatgc
     1201 cctgagcctg agcgcgttcg tctggacccg cgccggcggc ctgcagcggc tcggtggcct
     1261 gaacggcggc cgctactgct cggccgaggg catcagcgcc tacggtcgcg tggtggtggg
     1321 caccgccgag gatggcgatg ccgaaggcgc cgaccgcgcc ttccgctgga cccgccaggg
     1381 cggcatgcac gacctcggca cactcaactt cggccgctac tcccacgcct acgcctgcag
     1441 cgccgacggc ctggtggtgg tcggcgatgc cgccgacggc gccgtcggtc acgcctgccg
     1501 cggcttctac tggaccttcg ccagtgggat gcgcagcctc ggcgtgctca acggcggcct
     1561 gaccagccat gcctgcgcga tcagcgccaa cggccgggtg atcgccggct acgccgacga
     1621 cggcgcccgc gacaacgccc gccgcgccgt gcgctggaca gagcaggacg gcctgcgcag
     1681 cctgggcacg ctgaacggcg gccactactc gacggccacg gcgatcagcg ccgacggcag
     1741 caccatcgtc ggggtcgcca gcgacggtca tgccggcgag gccctgcgcg ccttcgtctg
     1801 gcgtgaggag accggcatgc gcagcctcgg cgggctcaat ggcggcctgg tatcgcgggc
     1861 caacggcgtc agcgccgacg gcgcggtggt ggtcggcgtg gccagcgacg gcgacgctga
     1921 cgacaacgag cgcggcttcg tctggacggc aggcggcggc atgcgctgcg tcgagtcctg
     1981 gctctacgaa cattcgctgg ccgccgaggc ggtgccggtg gtgcaggtca acggcatcag
     2041 tgccgatggc cagctactgg tcggccagct cgaaggcgaa cgcgccttca tcgccagcgt
     2101 gcgaccgcgc tggccgcttt cctgagtttc ggcgccacgg acggtgccac ctattcacac
     2161 gcgttgtcat gggtcgacag ggatgttgcc cacccttttt cggagcaagc gccatggagc
     2221 attggctgat cggcggcgcg ctggcgctga tttacctcag cggcctgtac gtctcgtcgc
     2281 gattgacgcc ctgagcggca tgcggcaccg tgcccggcac gttcatcccc acgcgcacgg
     2341 acgccatgcc gcacatcctc atcgtcgaag acgaagccgc catcgccgac accctggtgt
     2401 tcgccctgca gagcgaaggc ttcaccacca cctggctgaa cctggccgag gcggcactgg
     2461 agttccagca gcgcaccccg gcggacctgc tgattctcga cgtcggcctg ccggacatca
     2521 gcggtttcga ggcctgcaag cggctgcggc ggttctccga ggtgccagtg atcttcctca
     2581 ccgcgcgcga tgccgagatc gaccgcgtgg tgggcctgga gatcggtgcc gacgattacg
     2641 tggtcaagcc tttcagcccg cgcgaggtgg cggcgcgggt gcgggccatc ctcaagcgca
     2701 tggcgccgcg ggcggccgag ccggtggtgg aggcgggcgg accatttcgg gtggatgccg
     2761 agcgggtgca gatccactac cgcggccaac tactggtgct gacccgtcac gaattccgtc
     2821 tgctgcaggc gttgctggcg cagccggagc gggtgttcgc ccgcgagcag ctgctggacg
     2881 ccctgggcgt gccggccgat gccggctacg agcgcaacat cgacagccac atcaagagcc
     2941 tgcgcgccaa gctgcgccag gtggccgccg acgccgaacc gatccagacc catcgcggcc
     3001 tgggctacag ctacagcccg aagaacgcct agccggtgag cagcgcctcg gcgtcggccc
     3061 ggtcctgcgg gtcgacgtgt gcgcccagtc cgttcagcag ctcggccagc cggccgcgat
     3121 gcgcctcgct gggctgccag cgcaggcggg tcatggccag gcgcaggtgc caggcgccgg
     3181 cgcccaggta gtccgccagt tcttcggacc gcgccagcaa cgccgtcacc tcgtcttccc
     3241 ggcccaaggc cagcagcgcc tcggcgcgca ggcgcagcaa ttccggcatc aggtagcgat
     3301 cggcgcggcg ctcggcgatc tcgcccaggc gttcggcctc gcgcaccaga tccgcgtggc
     3361 ggccgaggcg caacagggca tcgagctgca gggtgccgag ggtgacctcg atgctcgaca
     3421 tggactggcg attgccgacc acgccgcgtt cgatgtccgc catgccgccg gcgtcgccct
     3481 gggccacccg ggcccagccg gtcatcacgt cggcgatgtc gtgccacacc tgcaggccgt
     3541 tgcgctggct caggtcgagg gtctccgccg ccatggccag gacctgctgc ggatcacgcc
     3601 gcaggaagtg cagcatggag gtgaacacca gcgagtagca caccgcgttg gcgaaaccgc
     3661 cggcgcgcac gtcgtcgagc agctcgtggc agaccgtctg cgcgcgctcg gcctggccgg
     3721 cgatccacag gccgagcagc aggtagttgc gggcgttgac cagcgggtcc tcgccatagt
     3781 cgcgcaggca ttccaggcgc gcctcgggct cgcagcaggc gatcatcgcc tcggccaggg
     3841 cgcgcgactc ctgcagcggg cggccccaga aggaaccgac caggcagcag ttctggccga
     3901 tcagcaggtg taccgggcgg ccggtgctgc gggccgcctc cagcacctgc tggccgagct
     3961 cgcgcacgcg gtcgtgggtc tgctcggagc cggcgccacc ccagatgccg aacagggtgc
     4021 ggaagcgcag ctccgggtcg tcgacctgcg tgccgagtgc gtgggcgcgg gcgaacgccg
     4081 ccagggtggt gctcgcgcca tagccgtcgg cggaattgag cacggtgccg agggccagtt
     4141 gcagctctag ttccagggcg tcgcgctcgg cgccggccgg cagttcggcc aggcaggcca
     4201 gggcgcgctg caggcactcg gccgcctcgc ggttggccga gatgcgccgg gcattggccg
     4261 cggcccgctg ccagtaggga atcgcctcgc tggtcaggcc ggcctcggcc aggtggtggg
     4321 ccagctgggc cggcgcatgc tgcgcgcggg ccggaaagcg ctggcgcagg atgtcggcga
     4381 tgcgcgcgtg gctgcgccgg cgctgggtgc gggtctgcga caggtaggcg gcctggtgga
     4441 tcagcgcgtg cttgaactgg tacagggtcg attgccgacc gggattgacc aggccgctgc
     4501 gcagcaggtc cttgaggtgg ccgtgcagca ccgccggatc gccctcgtgc agcgcctcga
     4561 gcagctcgat gtggaattcg cgaccgatac cggcggccag ctgggcggtg gcgcgggcgc
     4621 cgccgagcag gtcgatgcgc gccatcagca ggtcgttgag ggtcagcggc aggccctgtc
     4681 gcacgccgtc gctggccgcc cactgggcca gttcctcgat gaacagcggc acgccgtcgg
     4741 ccatcgccag cacccgctgc agctcgccgc gatccagagc gtcggtcagc ccggcgacca
     4801 tgccgcgcgc cagctcggcg ctcaggtgcg gcagctccag gcgctgcgcg ccgacctcga
     4861 gccagggctg cgcggcgaac tcggggcgcg cggtgatcag cagcatcagc gggcgctgct
     4921 ccggctcgcg cagcaggcgc tcgaacagct gcagggtcga ggagtcggcc cagtgcgcat
     4981 cctccagcac caccagcagc ggctgctggc ggttggcgcg gaggatggtc agcagcgcgt
     5041 cgagcatgcg ctcgcgccac aggtcgccgg gcatctcgcg caccggcgag gcctccggca
     5101 gtggcaggcc gagcaggtcg gcgaccaggt cgcggccctc ggcgtccagg gcgaagacgc
     5161 gcagcatctc gtccagccgc tggtagcgct gtgccgggg
//
LOCUS       DATIHC010000604         2318 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17171, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000604 DATIHC010000000
VERSION     DATIHC010000604.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2318
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17171"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..227
                     /locus_tag="VLF16_10050"
     CDS             <1..227
                     /locus_tag="VLF16_10050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020800362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71263.1"
                     /translation="VEHGYPRDEPGQANLALACNWVGQTYDCLAYTVEMPFKDHDLSP
                     DPRTGWNGARSKRLARDVLSVLAAMAGSLR"
     gene            366..2234
                     /locus_tag="VLF16_10055"
     CDS             366..2234
                     /locus_tag="VLF16_10055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012077437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HSX71264.1"
                     /translation="MARFFPTRAQCQFDTPGERRFAERLEKLLEDDYLCWANVPIGPK
                     ARYPDFVVLHPRRGVLVLEVKDWKLASIVSATPGKVSLQTLDGLKSVSNPLLQARSYV
                     MEVELLLKKDPLLRQSKSSPRPGELIMPWGWGVVLSNITRRQFEQTDLDDVLDPQRVI
                     CQDEMTESADPEDFQQRLWNMFPHVFPCALTLPQIDRVRYHLYPEVRVAQQSGQFGLF
                     EPDDAPLPSLIKVMDLQQEQLARSLGDGHRVIHGAAGSGKTMILGYRCAHLAKVSLKP
                     ILVLCYNKSLAGRLRQVIVEKGLGDKVTVQNFHAWCAEMLTSYNVDKPARSPSVETYV
                     AQLVEHTIAGVERQQIPRGQYSAVLIDEGHDFAPEWFKLVVQMVDPSTNSLLVLYDDA
                     QSIYRSKSGKSGLDFSFASVGIQAQGRTTILRLNYRNTVEILSVARGFATELLSSRDA
                     AEDGVPLISPESAGRSGAFPELIHCADERAEWDLLIARIRDEHAAGRALSDMAILYRS
                     TSQAYVAENQLRRAGLAYTSGASNKGRSQLYTDEDAVKIVSMHSSKGLEFGLVMIPGL
                     GEMPKKGEPEADEARLLYVAMTRAIDRLVMTHQGHSAFTRRVQETIVGFTAAGLSV"
BASE COUNT          424 a          725 c          751 g          418 t
ORIGIN      
        1 aggtggagca cggctacccg cgcgacgagc cgggtcaggc caacctggcg ctggcctgca
       61 actgggtcgg gcagacctac gattgcctgg cctacacggt ggagatgccg ttcaaggacc
      121 acgacctctc gccggacccg cgcaccggct ggaacggcgc gcgctccaag cgcctggcgc
      181 gcgacgtgct gagcgtgttg gcggcgatgg cgggtagctt gcgctagctg ccgtcgggaa
      241 gggattcggc acagcggtcg gatgatggca gaatgccttg gtcgcgcccg gccagttcgt
      301 tgcgttcagc catggatgaa tcgcgggcga ctccctaacg gtcacttcac ggatggaagg
      361 ctccaatggc ccgcttcttt cctacgcgcg cgcagtgcca gttcgacacg cctggcgagc
      421 ggcgtttcgc cgagcgcctg gagaaactgc tcgaggatga ttacctgtgc tgggccaatg
      481 tcccgatcgg gcccaaggcg cgctaccccg acttcgtcgt gctccatccg cggcgtggcg
      541 tgctggtgct cgaggtcaag gactggaagc tggccagcat cgtctcggcc actcccggca
      601 aggtcagtct gcagaccctt gacggtctga agagcgtcag caatcccctg ctgcaggcgc
      661 gctcctatgt catggaagtc gagctgctgc tgaagaagga cccgctgctg cggcagagca
      721 agagttcgcc gcgccccggt gaactgatca tgccctgggg ctggggcgtg gtgctgagca
      781 acatcacgcg gcgtcagttc gagcagaccg accttgatga tgtactggac ccgcagcggg
      841 tcatctgcca ggacgagatg accgagtcgg ccgaccccga ggacttccag cagcgccttt
      901 ggaacatgtt cccgcatgtc ttcccctgcg ccttgaccct gccgcaaatc gaccgcgtgc
      961 gttatcacct ctacccggag gtacgggtgg cccagcaatc gggccagttt ggtctgttcg
     1021 aacccgacga cgcgccgctg cccagcctga tcaaggtcat ggatctacag caggagcagc
     1081 tcgcccgctc gctgggcgat ggccatcggg tcatccacgg cgcggccggt agcggcaaga
     1141 ccatgatcct cggctatcgc tgcgcgcacc tggcgaaagt ctcgctgaag ccgattctgg
     1201 tgctctgcta caacaagtct ctggccgggc ggctgcgcca ggtaatcgtg gaaaaaggcc
     1261 tgggcgacaa ggtcacggtg cagaatttcc acgcctggtg cgcggagatg ctgacgagct
     1321 acaacgtcga caagcccgcc cgcagcccat cggtggagac ctatgttgcg cagctggtgg
     1381 agcacaccat tgccggcgtc gagcgccagc agattcctcg cgggcagtat tccgcggtgc
     1441 tgatcgacga ggggcatgac ttcgcgccgg agtggttcaa gctggtggtg cagatggtcg
     1501 acccgagtac caattcgctg ctggtgctgt atgacgatgc gcagtccatc tatcgcagca
     1561 agagcggcaa gtcggggttg gacttcagct tcgccagcgt cggcatccag gcccaggggc
     1621 gtactaccat cctgcggctc aactaccgta ataccgtgga aattctcagt gtcgcccgtg
     1681 gctttgccac tgagttgctc agcagtcgcg acgctgctga agatggtgtg ccattgatct
     1741 cgccggagag tgccgggcgc agtggcgctt tccccgaact tatccactgc gcggatgagc
     1801 gcgccgagtg ggacctgctg atcgcccgca tccgcgatga acatgccgct ggccgggccc
     1861 tgagcgacat ggccattctg tatcgcagca ccagccaggc ctacgtggcg gaaaaccagc
     1921 tcaggcgtgc cggccttgcc tatacctcgg gcgccagcaa caaaggacgc agccagctgt
     1981 acaccgatga ggacgcggtg aagatcgtaa gcatgcactc cagcaaaggc ctggagttcg
     2041 gcctggtgat gattcccgga ttgggcgaaa tgccgaagaa gggcgagccc gaagcggatg
     2101 aggcacgcct gctctatgtg gccatgaccc gcgccatcga tcgcctggtc atgacccatc
     2161 aggggcattc ggcctttacc cgccgggtgc aggaaaccat cgtcggattc actgccgccg
     2221 gattgtctgt ctgagccgca aggagcgaag catgcgcaag atcatccaga tacagagcct
     2281 gccaggctct tcaagtggca tctacgccct gtgcgacg
//
LOCUS       DATIHC010000605         1970 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29608, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000605 DATIHC010000000
VERSION     DATIHC010000605.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1970)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1970)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1970
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29608"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(3..440)
                     /locus_tag="VLF16_10060"
     CDS             complement(3..440)
                     /locus_tag="VLF16_10060"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009313714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HSX71265.1"
                     /translation="MSLHGTYDEQNIFAKIIRGEAPCYKLYEDDDVLAFLDLFPQSYG
                     HCLVIPKNAPARNLLEIDDANLAKLMAVVRKLTQAVVDELEPAGVQVAQFNGAPAGQT
                     VFHIHMHIVPRYEGDQLGIHASNQADADQLKALQARLVKRING"
     gene            563..1267
                     /locus_tag="VLF16_10065"
     CDS             563..1267
                     /locus_tag="VLF16_10065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015478358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HSX71266.1"
                     /translation="MPDLSAFPITRKWPATQPDRLQLYSLPTPNGVKVSIMLEEIGLP
                     YEPHLVSFETNDQTSPEFLSLNPNNKIPAILDPNGPNGAPLALFESGAILVYLAEKSG
                     ELLPQDPAARYQCLQWLMFQMGGIGPMFGQLGFFHKFASKDYEDKRPRDRYVAESARL
                     LGVLDKHLEGRAWIMGEQYSIADIATFPWVRNLIGFYEAGELVQFERFANVRRVLEAF
                     LQRPAVTAGLNIPARD"
     gene            1522..>1970
                     /locus_tag="VLF16_10070"
     CDS             1522..>1970
                     /locus_tag="VLF16_10070"
                     /inference="COORDINATES: protein motif:HMM:TIGR02098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MJ0042-type zinc finger domain-containing
                     protein"
                     /protein_id="HSX71267.1"
                     /translation="MTEDVIGVTVCDECGTRYKLRERNRHQLGKPARCQKCNTIFNVE
                     LVEPTPLENAAIKNEAEQEQEVAERKPRQRRTKEEIRQEFLDTIRAGFKSLHPRLVAM
                     DLAEKSSEENVRIWVIDSLIAALGYSHNEIDTEVRTLGKRIDIALKK"
BASE COUNT          395 a          671 c          585 g          319 t
ORIGIN      
        1 actcagccgt tgatgcgctt gaccaagcgc gcctgcagcg ccttcaactg atcggcgtcg
       61 gcctggttgc tggcgtggat gccgagctgg tcgccctcgt agcgcggcac gatgtgcatg
      121 tggatgtgga acaccgtctg ccccgccggg gcgccgttga actgcgccac ctgcacgccg
      181 gccggctcca gctcgtccac caccgcctgg gtcagcttgc gcaccacggc catcagcttg
      241 gccaggttgg cgtcgtcgat ctccaggagg ttgcgcgccg gcgcgttctt cggaatcacc
      301 aggcaatggc cgtaggactg cgggaacagg tcgaggaagg caagcacgtc gtcatcctcg
      361 tacagcttgt agcagggcgc ctcgccgcga atgatcttgg cgaagatgtt ctgctcgtca
      421 taggtgccgt gcaggctcat gggattctcc ttgtcgacaa agccaaaggg cgaaccatac
      481 cggcttccgc cgagtcaggt aaggatgtcg tcgcccttgg cggccggcta tcctgaccgt
      541 ctcgccagat accggagttc ccatgccaga cctgtccgcc ttccccatca cgcgcaaatg
      601 gcccgccacc cagcccgacc gcctgcagct ctattcactg cccacgccca acggggtcaa
      661 ggtgtcgatc atgctggaag agatcggcct gccctacgag ccgcacctgg tcagcttcga
      721 gaccaacgac cagacgagcc cggaattcct ctccctcaac ccgaacaaca agatccccgc
      781 catcctcgac cccaacgggc cgaacggcgc accgctggca ctgttcgagt ccggcgccat
      841 cctcgtctac ctggcggaga agagcggcga gctgctgccg caggatccgg ccgcccgcta
      901 ccagtgcctg cagtggctga tgttccagat gggcggcatc ggcccgatgt tcggccagct
      961 cggcttcttc cacaaattcg ccagcaagga ctacgaggac aagcgcccgc gcgaccgcta
     1021 cgtggccgag tccgcccgcc tgctcggcgt gctcgacaag cacctggaag gccgcgcctg
     1081 gatcatgggc gagcagtaca gcatcgccga catcgcgacc ttcccctggg tgcgcaacct
     1141 gatcggcttc tacgaggccg gcgaactggt gcagttcgaa cgcttcgcca acgtccgccg
     1201 cgtgctcgag gccttcctcc aacgcccggc ggtgacggcc ggcctgaaca ttcctgcgcg
     1261 ggattgaggc agacggtgcg catggcgtcc cagcggtagg gtgcgccgtg cgcaccaacc
     1321 acccgcgcgg aacgtttacc cgcggggact cgctccaccg atatcctcgg cccggaacaa
     1381 accagctcct cacgcacctt ccttccgccc tgctggccat aagccagcca aggagatata
     1441 accacaggaa aaggccggtt atgcctccag ttgccaagga cgggctatcg gcagaagaac
     1501 tcactgctgc gaggagctgc catgactgag gatgtaatcg gcgtcaccgt gtgcgatgaa
     1561 tgcggcactc gctacaagct tcgtgaaaga aatcgtcatc aactcggcaa gcccgcccgc
     1621 tgccagaagt gcaacacgat cttcaacgtc gagcttgtag agccgacccc gctcgaaaac
     1681 gcggccataa agaacgaggc ggagcaggaa caggaagtcg ccgaacgcaa gccgcggcaa
     1741 cggcggacaa aggaggagat ccgccaggaa ttcctcgaca ccatccgcgc cggcttcaag
     1801 tctctgcatc cccgcctagt ggcgatggac ctggccgaga agtcctcgga agagaacgta
     1861 cgcatctggg tgatcgacag cctgatcgcc gccctcggat acagccacaa cgagatcgac
     1921 accgaagtca gaacgctcgg aaagcgcatc gacatcgcgc tgaagaagga
//
LOCUS       DATIHC010000606         5415 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_15004, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000606 DATIHC010000000
VERSION     DATIHC010000606.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5415
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15004"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3215
                     /gene="uca"
                     /locus_tag="VLF16_10075"
     CDS             <1..3215
                     /gene="uca"
                     /locus_tag="VLF16_10075"
                     /EC_number="6.3.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003246905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004847 - urea carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="urea carboxylase"
                     /protein_id="HSX71268.1"
                     /translation="LEEALAAAEGIGYPVMLKTTAGGGGIGLTRCADAEALASAYDSV
                     KRMGEQFFSDAGVFLERFVDQARHVEVQIFGDGQGRVAALGERDCSLQRRNQKVVEET
                     PAPNLPQATRERLHAAAVQLGESVSYRSAGTVEFIYDAARDDFYFLEVNTRLQVEHPV
                     TEMVTGLDLIECMLRVAAGDALDWDALSRAPQGAAIEVRIYAEDPLKNFQPSPGVLTE
                     VHFPEGVRVDGWVSTGSEVSAFYDPMIAKLIVHGESRIDAIAKMRAALGETRLHGIAS
                     NIDYLRQVVADPRFAAGQVWTRLLDSFEFNASVIEVLEPGTYSSVQDYPGRLGYWDIG
                     VPPSGPMDDFAFRLANRIVGNHADAAGLEFTLQGPTLRFHCAALIALTGADCPATLDG
                     EAVAYWQPIPVKAGQVLKLGRALSGCRTYLAVRNGFDVPQYLGSRSTFALGQFGGHAG
                     RTLRPADMLAISQPALPACTTPAPVAAPQAVHPSLIPSYGTTWNIGVLYGPHGAPDFF
                     TPEAIEEFFAAEWEVHYNSNRLGVRLSGPKPSWTRADGGEAGLHPSNVHDCEYAIGAI
                     NFTGDFPVILTKDGPSLGGFVCPVTIAKAELWKVGQVKPGDKLRFHPIGFQQAQSLEQ
                     AQLGSLEALAAISAVTLPAPSLQPDDTVSATVLAELPAEGSRPHVVYRQAGDAYILME
                     YGDNVLDLALRLRVHLLMEALKAEPLRGLEELAPGVRSLQLRYDSRVLHQQALIDHLL
                     SLELRLGDVASLKVPTRIVHLPMAFEDSATLGAVTRYRETVRSEAPWLPNNVDFLQRI
                     NGLASRDEVKDILFDASYLILGLGDVYLDAPCAVPLDPRHRLLSSKYNPARTYTAEGT
                     VGIGGMYMCIYGMDSPGGYQLVGRTLPIWNKYVKNAQFENGEPWLLRFFDQVRFYPVS
                     EAELDDFREAFREGRAQIRIEHSQFDFAEYRRFLADNQDGIAAFQARQKAAFDAEVPL
                     WREDEVAAVAPPAAAQDDDGDLDGHLVSADMCGSVWKVLVEPGQHVEAGTPLLVVEAM
                     KMELAVTAPVSGIVKSVRCQPGKTVTPGDALLLLVPSEAA"
     gene            3217..3939
                     /locus_tag="VLF16_10080"
     CDS             3217..3939
                     /locus_tag="VLF16_10080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HSX71269.1"
                     /translation="MQLVSPDKRGRERPENLAERIYAQLKDDIFEFRLLPGDRFSEGE
                     VAERMAVSRTPVRQALYRLEREGYLEVYFRSGWQVRPFDFHYFEELYEVRIVLELEAV
                     KRLCDRPAGELPAPLEDLRRTWMVTPEERLQDGRAVSLLDERFHCQLVEATGNREMAR
                     MHAEVSEKIRIIRRLDFTQGPRVEATYAEHAQILGAILSRRQEEAQLMLRAHIEVSKA
                     EVRKITLHMLHSARQRAMAGQG"
     gene            4019..5287
                     /gene="urtA"
                     /locus_tag="VLF16_10085"
     CDS             4019..5287
                     /gene="urtA"
                     /locus_tag="VLF16_10085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0033219 - urea binding [Evidence IEA];
                     GO_function: GO:0033221 - ATPase-coupled urea
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015840 - urea transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urea ABC transporter substrate-binding protein"
                     /protein_id="HSX71270.1"
                     /translation="MQRRSLIKAFTLSASIAAMGMTWTVQAAETIKVGILHSLSGTMA
                     ISETSLKDMALMTIDEINAKGGVNGKQLEPVVVDPASNWPLFAEKARQLLTQDKVDVV
                     FGCWTSVSRKSVLPVFEELNGLLFYPVQYEGEEMSPNVFYTGAAPNQQAIPAVEYLMS
                     EDGGEAKRFFLLGTDYVYPRTTNKILRAFLHSKGVQDKDIEEVYTPFGHSDYQTIVAN
                     IKKFGSAGKKTAVVSTINGDANVPFYKELANQGIEATDIPVVAFSVGEEELRGIDTKP
                     LVGQLAAWNYFQSVDNSVNSAFVDKWKAYAKAKNLPNYQTAVTNDPMEATYVGINMWA
                     QAVEKAGTTEVDKVREALAGQTFAAPSGYTLTMDKTNHHLHKPVMIGEVQEDGQFSIV
                     WQTEGPLRAQPWSPFIPGNDKKPDYAVKSN"
BASE COUNT          969 a         1926 c         1723 g          797 t
ORIGIN      
        1 gcctggagga agccctcgcc gccgccgagg gcatcggcta cccggtgatg ctcaagacca
       61 ccgccggtgg tggcggcatc ggcctgaccc gctgcgccga tgccgaggcc ctggccagcg
      121 cctacgacag cgtcaagcgc atgggcgagc agttcttcag tgacgccggg gtattcctcg
      181 agcgcttcgt cgaccaggcg cggcatgtcg aggtgcagat cttcggcgac ggccagggcc
      241 gcgtggccgc cctcggcgag cgcgactgct cgctgcagcg gcgcaaccag aaggtggtcg
      301 aggaaacccc ggcacccaac ctgccccagg ccacccgcga acgcctgcac gccgccgccg
      361 tgcagctcgg cgagtcggtg agctaccgca gcgccggcac cgtggagttc atctacgacg
      421 ccgcccgcga cgacttctac ttcctcgaag tgaacacgcg cctgcaggtc gagcatccgg
      481 tcaccgagat ggtcaccggc ctggatctga tcgaatgcat gctgcgcgtg gccgccggcg
      541 atgcgctgga ctgggacgcc ctgagccgcg cgccacaggg cgccgccatc gaggtgcgca
      601 tctacgccga ggacccgctg aagaacttcc agcccagccc aggcgtgctc accgaagtgc
      661 acttccccga gggcgtgcgc gtcgacggct gggtcagcac cggcagcgag gtctcggcct
      721 tctatgaccc gatgatcgcc aagctgatcg tccacggcga aagccgcatc gatgccatcg
      781 ccaagatgcg tgcggctctc ggtgaaaccc gcctgcacgg catcgccagc aatatcgatt
      841 acctgcgcca agtggtggcc gacccgcgct tcgccgccgg ccaggtgtgg acccgcctgc
      901 tcgacagctt cgagttcaac gccagcgtca tcgaggtgct ggagcccggc acctattcca
      961 gcgtgcagga ctacccgggc cgcctcggct actgggacat cggcgtgccg ccgtccgggc
     1021 cgatggacga tttcgccttt cgcctggcca accgcatcgt cggcaaccac gccgatgccg
     1081 ccggcctgga attcaccctg cagggcccga ccctgcgctt ccactgcgct gcgctgatcg
     1141 ccctcaccgg tgccgattgc ccggcgaccc tggatggcga ggccgtggcc tactggcagc
     1201 caatcccggt caaggccggc caggtgctca agctcggccg cgcgctcagc ggttgccgca
     1261 cctacctggc ggtgcgcaac ggcttcgatg tgccgcagta cctgggcagc cgctcgacct
     1321 tcgccctcgg ccagttcggc ggccacgccg gccgcaccct gcgcccggcc gacatgctgg
     1381 ccatctcgca acccgccctg ccggcctgca ccacgccagc cccggtcgcc gcgccgcaag
     1441 ccgtgcaccc gagcctgatc cccagctacg gcaccacctg gaacatcggc gtgctctacg
     1501 gcccgcacgg cgcgccggac ttcttcacgc ccgaggcgat cgaggagttc ttcgccgccg
     1561 aatgggaggt gcactacaac tccaaccggc tcggcgtgcg tctcagtggc ccgaagccaa
     1621 gctggacccg cgccgacggc ggcgaggccg gcctgcaccc gtccaacgtg cacgactgcg
     1681 aatacgccat cggcgcgatc aacttcaccg gcgacttccc ggtgatcctg accaaggacg
     1741 gcccgagcct cggtggcttc gtctgcccgg tgaccatcgc caaggccgag ctgtggaagg
     1801 tcgggcaggt caaaccgggc gacaagctgc gcttccaccc catcggtttc caacaggcac
     1861 agagcctgga gcaggcgcag ctgggcagcc tcgaagccct ggccgcgatc agtgcggtga
     1921 ccctgccggc accttcgctg cagccggacg acacggtgtc cgccaccgtg ctggccgagt
     1981 tgccggccga gggcagccgt ccgcacgtgg tctatcgcca ggccggcgac gcctacatcc
     2041 tcatggagta cggcgacaac gtgctcgacc tggccctgcg cctgcgcgtg cacctgctga
     2101 tggaggcgct gaaggccgag ccgctgcgcg gcctggaaga gctggcaccc ggcgtgcgct
     2161 cgctgcagct gcgctacgac agccgcgtac tgcaccagca ggcgctgatc gaccacctgc
     2221 tgtcactgga attgcgcctc ggtgatgtcg ccagcctcaa ggtgccgacc cgtatcgtcc
     2281 acctgccgat ggccttcgag gacagcgcca ccctcggtgc cgtcacccgc taccgcgaga
     2341 ccgtgcgcag cgaggcgccg tggctgccga acaacgtcga cttcctgcag cgcatcaacg
     2401 gcctggccag tcgcgacgag gtgaaggaca tcctgttcga cgccagctac ctgatcctcg
     2461 gcctaggcga tgtctacctc gacgcgccct gcgccgtacc gctggacccg cgccaccgcc
     2521 tgctcagctc caagtacaac ccggcgcgca cctacaccgc cgaaggcacg gtaggtatcg
     2581 gtggcatgta catgtgcatc tacggcatgg actcgcccgg cggctaccag ttggtcggcc
     2641 gtaccctgcc gatctggaac aagtacgtga agaacgccca gttcgagaac ggcgagccat
     2701 ggctgctgcg cttcttcgat caggtacgtt tctacccggt cagcgaagcc gagctggacg
     2761 acttccgtga agccttccgc gagggccgcg cgcagatccg catcgagcac agccagttcg
     2821 atttcgccga gtaccggcgc ttcctcgccg acaaccagga cggcatcgcc gccttccagg
     2881 cccggcagaa ggccgccttc gacgccgagg tgccgctgtg gcgcgaggac gaggtcgctg
     2941 ccgtcgcacc gccggccgcc gcccaggacg acgacggcga tctcgacggt cacctggtga
     3001 gcgccgacat gtgcggcagc gtgtggaagg tgctggtcga gcccggccag cacgtcgagg
     3061 ccggcacgcc gctgctggtg gtcgaggcga tgaagatgga gctggcggtc accgcgccgg
     3121 tgtccggcat cgtcaagtcg gtgcgctgcc agccgggcaa gacggtgacg ccgggcgacg
     3181 cgctgctcct gctggtcccg agcgaggccg cctgacatgc agttggtcag tcccgacaag
     3241 cgcggccgcg agcgcccgga gaacctggcc gagcgcatct acgcccagct caaggacgac
     3301 atcttcgagt tccgcctgct gcccggcgac cgcttctccg aaggcgaagt cgccgagcgc
     3361 atggccgtca gccgcacccc ggtgcgccag gccctgtacc ggctggagcg cgagggctac
     3421 ctggaggtgt atttccgcag cggctggcag gtgcggccgt tcgacttcca ctacttcgaa
     3481 gagctgtacg aggtgcgcat cgtcctcgaa ctggaggcgg tcaagcgcct gtgcgatcgc
     3541 ccggccggcg agctgccggc gccgctggaa gacctgcggc gcacctggat ggtaacgccg
     3601 gaggagcgcc tgcaggacgg acgcgccgtg tcgctgctcg acgagcgctt ccactgccag
     3661 ctggtggagg ccaccggcaa ccgcgagatg gcccgcatgc acgcggaagt cagcgagaag
     3721 atccgcatca tccggcgcct ggacttcacc caggggccac gcgtggaggc gacctacgcc
     3781 gaacacgcac agatcctcgg cgcgatcctg tcgcgccgcc aggaagaagc acagctgatg
     3841 ctcagagccc acatcgaggt gagcaaggcg gaagtgcgca agatcaccct gcacatgctg
     3901 cacagcgccc ggcagcgggc gatggccggg caagggtgac gcgatgacct tttggacgac
     3961 tgccaaccaa caaccagaaa ccagcagtac tcacattagc tcgaatggag atcgcaccat
     4021 gcaacgtcgc agcctgatca aggccttcac cctttccgca tccatcgccg ccatgggcat
     4081 gacctggacc gtacaggccg ccgagaccat caaggtcggc atcctgcact cgctgtccgg
     4141 caccatggcc atctccgaaa cctcgctgaa agacatggcg ctgatgacca tcgacgagat
     4201 caacgccaag ggcggcgtca atggcaagca gctcgagccg gtggtggtcg acccggcctc
     4261 caactggccg ctgttcgccg agaaggcgcg ccagctgctg acccaggaca aggtcgacgt
     4321 ggtcttcggc tgctggacct cggtgtcgcg caagtccgtg ctgccggtgt tcgaggagct
     4381 caacggcctg ctgttctacc cggtgcagta cgaaggcgaa gagatgtcgc cgaacgtgtt
     4441 ctacaccggc gccgcgccga accagcaggc gatcccggcc gtggaatacc tgatgagcga
     4501 agacggcggc gaggccaagc gcttcttcct gctgggcacc gactacgtct acccgcgcac
     4561 caccaacaag atcctgcgcg ccttcctgca ttccaaaggc gtacaggaca aggacatcga
     4621 agaggtctac acccccttcg gtcatagcga ctatcaaacc atcgtcgcca acatcaagaa
     4681 gttcggttcg gcgggcaaga agacggcggt ggtctccacc atcaacggtg acgccaacgt
     4741 tccgttctac aaggagctgg ccaaccaggg catcgaagcc accgacatcc cggtggtggc
     4801 cttctcggtc ggcgaggaag aactgcgcgg catcgacacc aagccgctgg tgggccagct
     4861 ggccgcctgg aactacttcc agtcggtgga caactcggtc aacagcgcct tcgtcgacaa
     4921 gtggaaggcc tacgccaagg ccaagaacct gccgaactac cagaccgcgg tgaccaacga
     4981 cccgatggaa gccacctacg tcggcatcaa catgtgggcc caggccgtcg agaaagccgg
     5041 caccaccgaa gtcgacaagg tgcgcgaggc cctggccggt cagaccttcg ccgcgccgag
     5101 cggctacacc ctgaccatgg acaagaccaa ccaccacctg cacaagccgg tgatgatcgg
     5161 cgaagtccag gaagacggtc agttctccat cgtctggcag accgaaggcc cgctgcgcgc
     5221 ccagccgtgg agcccgttca tccccggcaa cgacaagaag ccggactacg cggtgaagag
     5281 caactaagcg aagcccctct ccctagccct ctcccaccag tgggagaggg aacggcctgg
     5341 tgttgcttgc tacacctcag caacgccggg gcgtttccct cccctctccc gttcacggga
     5401 gaggggccgg gggag
//
LOCUS       DATIHC010000607         4883 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36727, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000607 DATIHC010000000
VERSION     DATIHC010000607.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4883
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36727"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..540)
                     /locus_tag="VLF16_10090"
     CDS             complement(<1..540)
                     /locus_tag="VLF16_10090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019725943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod-binding protein"
                     /protein_id="HSX71271.1"
                     /translation="MDINVPAGLSRGKHFDSGAYTDLTRLSQFKVGGDSDSNIKKVAQ
                     EFESVFVNEMMKAMRKANEVFGEDNFMNSNASKTYQDMYDQQLAVTMSKSANGIGLAN
                     VLERQLSKMKGGDHRTNPFPQMAAVASNDAAVSRPGAFKAAASQEPNPGRDDSKLLAQ
                     RRLTLPPRLTDRLLAGIVPA"
     gene            complement(552..1652)
                     /locus_tag="VLF16_10095"
     CDS             complement(552..1652)
                     /locus_tag="VLF16_10095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003456927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HSX71272.1"
                     /translation="MKRLISVFCLLLATGVAQAERLKDLASIQGVRSNQLIGYGLVVG
                     LNGTGDQTTQTPFTLQTFNNMLAQFGIKVPVGGGNVQLKNVAAVSVHAELPAFSKPGQ
                     TLDVTISSIGNAKSLRGGSLLMTPLKGIDGNVYGIAQGNLVVGGFDATGGDGSRITVN
                     VPSAGRIPGGATVERPVPSGFDQGNTLTLNLNRPDFTTAKNIVDQINGLLGPGVAQAL
                     DGGSIRVSAPLDPNQRVDYLAVLENIEIEAGQAAAKVIINSRTGTIVIGQNVKVQPAA
                     VTHGSLTVTITEDPIVSQPNALSGGQTAVVPRSRVDAAEEAKPMFKFGPGTTLDEIVR
                     AVNQVGAAPSDLMAILEALKQAGALQADLIVI"
     gene            complement(1667..2380)
                     /gene="flgH"
                     /locus_tag="VLF16_10100"
     CDS             complement(1667..2380)
                     /gene="flgH"
                     /locus_tag="VLF16_10100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009427 - bacterial-type flagellum basal
                     body, distal rod, L ring [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HSX71273.1"
                     /translation="MNRPMMIVCLLGCAALSGCVSPPPKPDDPYYAPVLPRTPLPAAQ
                     TNGAIYQPGFENNLYGDRKAYRVGDIITINLSERTQASKSAGSNLSKDSSANLGLTSL
                     FGGGVSLSNPNSSLNPLKADDLSLDVGYRGTRATEGDSAADQSNSLTGSITVTVAEVL
                     PNGILAVRGEKWLTLNTGDELVRIAGMVRADDIATDNTVSSTRVANARITYSGTGAFA
                     DASQPGWFDRFFMSPLFPF"
     gene            complement(2428..3213)
                     /gene="flgG"
                     /locus_tag="VLF16_10105"
     CDS             complement(2428..3213)
                     /gene="flgG"
                     /locus_tag="VLF16_10105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009426 - bacterial-type flagellum basal
                     body, distal rod [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HSX71274.1"
                     /translation="MLPALWVSKTGLSAQDMNLTTISNNLANVSTTGFKRDRAEFQDL
                     LYQIRKQPGAQSTQDSELPTGLQLGTGVRIAGTQKIFTQGSLQTTEQPLDIAINGRGF
                     FQILMPDGTVSYTRDGSFHLNSDGQVVTDQGYPLEPAIVLPPEVQTFMVGEDGTASIT
                     TFGNPAPQVIGNIQTADFINPAGLQAIGGNLFLETASSGAPQVGTPGLTGLGQVLQNT
                     LENSNVSVVEELVNMITTQRAYEMNSKVISTADQMLSFVTQNL"
     gene            complement(3259..4002)
                     /locus_tag="VLF16_10110"
     CDS             complement(3259..4002)
                     /locus_tag="VLF16_10110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgF"
                     /protein_id="HSX71275.1"
                     /translation="MDKMLYVSMTGAKENTLAMRAHANNLANVSTTGFKRDFEQARSM
                     PVFGDHFPARVYAMSERPGTDFTAGTLQETGNDLDVAVEGQGWVAVQAADGSEAYVRT
                     AAMQIDALGILRTGSGLPVLGNGGPIAVPPEQKVEIGADGTISIRALGEAPNVMAEVD
                     RIKLVNPDPSTLEKGLDGMIRVKDQTEPLAPDANVRVVSGFLEASNVNAVEEMTAILS
                     LSRQFELHVKMMRTAEEDATAAARVLQSS"
     gene            complement(4202..>4883)
                     /locus_tag="VLF16_10115"
     CDS             complement(4202..>4883)
                     /locus_tag="VLF16_10115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003086405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein"
                     /protein_id="HSX71276.1"
                     /translation="NWTMNVLVDGRNPSDPASTEPYTVAVPFDDSGNLGTMVPGTPTT
                     GAGFSIADNVLTLSDWVPAQSDGGTPPVWAANGAAASDIDLDMRGSTQYSSAFAVNSI
                     EQDGYTTGQLSGLEIDAEGNVFARYTNGQSKIQGQVVLANFANPQGLTPVGKTSWVQS
                     SESGEPVIGTPRSGTLGALQSGALEASNVDISTELVDLIVAQRNYQANAKTIETESAI
                     TQTIINLR"
BASE COUNT          771 a         1503 c         1674 g          935 t
ORIGIN      
        1 ggcgggcacg atgccagcca gcagccggtc ggtgagccgc ggtggcaggg tcaggcggcg
       61 ctgggccagc agcttggaat cgtcgcgacc gggattcggt tcttggctgg cagcggcttt
      121 gaacgcaccc ggacgcgaga cggcagcatc gttgctggcc acggcggcca tctgcgggaa
      181 gggattggtc cgatggtcgc cgcccttcat cttgctcagc tgacgctcca gcacattggc
      241 cagaccgatg ccattggcac tcttggacat ggtcacggcc agctgctggt cgtacatgtc
      301 ctggtaggtc ttgctggcgt tgctgttcat gaagttgtct tcgccgaaga cctcgttggc
      361 cttgcgcatc gccttcatca tttcattgac gaagaccgac tcgaactcct gcgccacctt
      421 cttgatgttg ctgtcgctgt cgccgccgac cttgaactgg ctgagccggg tcaggtcggt
      481 gtaggcgccg ctgtcgaagt gcttgccacg ggacaggccg gccgggacgt tgatatccat
      541 gggctgcctc ctcagatcac gatcaggtcg gcctggagcg caccggcctg cttgagggct
      601 tccaggatgg ccatcaggtc ggacggcgcc gcgcccacct gattgacagc cctgacgatt
      661 tcgtcgagcg tggtgccggg gccgaacttg aacatcggct tggcctcctc cgccgcgtcc
      721 acgcgcgagc gcggcaccac tgcggtctgg ccgccggaca gcgcgttggg ctggctgacg
      781 atggggtctt cggtgatggt caccgtcagg ctgccgtggg tcaccgcggc cggctgcacc
      841 ttaacgttct gaccgatgac aatggtgccg gttcgggaat tgatgatgac tttcgccgcc
      901 gcctgccctg cctcgatctc gatgttctcc agcaccgcca gataatcgac gcgctggttc
      961 gggtccagcg gcgcgctgac gcggatcgag ccgccatcca gcgcctgggc cacgcccggg
     1021 ccgagcaggc cgttgatctg gtcgacgatg ttcttggcgg tggtgaagtc cgggcgattg
     1081 agattgagcg tcagggtgtt gccctgatcg aagccactcg gcacgggccg ctcgacggtg
     1141 gcgccgccgg ggatacgtcc cgccgacggc acgttgacgg tgatgcgcga gccgtcgccg
     1201 ccggtggcgt cgaagccgcc gaccaccagg ttgccctggg cgatgccgta gacgttgccg
     1261 tcgatgccct tcagcggggt catcagcagg ctgccgccgc gcaggctctt ggcgttgccg
     1321 atggaggaaa tggtcacgtc cagggtctgg ccgggcttgg aaaaagccgg caactcggca
     1381 tgcacggaga ccgccgcgac gttcttcagc tgcacattgc cgccgccgac cggcaccttg
     1441 atgccgaact gcgccagcat gttgttgaag gtctgcaggg tgaacggcgt ctgggtggtc
     1501 tggtcgcccg tgccgttgag gccgaccacc aggccgtagc cgatcagttg gttgctccgc
     1561 acgccctgga tgctggccag atcctttagc cgctcggcct gggccacgcc cgtggcgagc
     1621 agcaggcaga agacggatat cagtcgtttc atgctcggtt acctgctcag aacgggaaca
     1681 acgggctcat gaagaaccga tcgaaccagc ccggctgact ggcatcggcg aaggcgccgg
     1741 tgccggaata ggtgatgcgc gcgttggcca cgcgggtcga ggacacggtg ttgtcggtgg
     1801 cgatgtcgtc cgcgcggacc atgccggcga tgcgcaccag ctcgtcgccg gtgttcaggg
     1861 tcagccactt ctcgccgcgc acggcgagaa tgccgttggg cagcacctcg gccacggtca
     1921 cggtgatcga gccggtcagg ctgttgctct ggtccgccgc gctgtcaccc tcggtggcgc
     1981 gggtgccgcg gtagcccaca tccaggctga ggtcgtcggc cttgagcggg ttgaggctgg
     2041 aattcggatt gctcagcgac acgccgcctc cgaacagcga ggtcaggccc aggttggcgc
     2101 tgctgtcctt ggacaggttg gagcccgccg acttgctcgc ctgggtgcgc tcgctcaggt
     2161 tgatggtgat gatgtcgccg acccggtagg ccttgcgatc cccatacaga ttgttctcga
     2221 aaccgggctg gtagatagcg ccgttggtct gggcggcggg cagcggcgtg cgcggcagca
     2281 ccggtgcgta ataggggtcg tccggcttcg gtggcgggga gacgcatcca ctcagagccg
     2341 cgcatcccag caggcaaaca atcatcatcg gccggttcat aacctggtac ctcacagcgc
     2401 gacgccgacg gagccggcgc ctatggatca aagattctgg gtaacgaagg acagcatctg
     2461 gtcggcggtg gagatgacct tggagttcat ctcgtaggca cgttgggtgg tgatcatgtt
     2521 caccagctcc tcgaccacgc tgacgttgga gttttccagg gtgttctgca gcacctggcc
     2581 gaggccggtg aggcccggcg tgccgacctg cggcgcgcca ctggacgcgg tttccaggaa
     2641 caggttgccg ccgatggcct gcaggccggc cgggttgatg aagtcggcgg tctggatgtt
     2701 gcctatcacc tgcggcgccg ggttgccgaa ggtggttatc gacgcggtgc cgtcctcgcc
     2761 gaccatgaag gtctgcacct ccggcggcag cacgatggcc ggctccagcg gatagccctg
     2821 atcagtgacc acctgaccgt ccgaattgag gtggaagctg ccgtcgcggg tgtaggacac
     2881 ggtgccgtcg ggcatcagga tctggaagaa gccccggccg ttgatggcga tgtccagcgg
     2941 ctgctcggtg gtctgcaggc tgccctgggt gaagatcttc tgggtaccgg cgatgcgcac
     3001 accggtaccc agctgcaggc cggtgggcag ctcgctgtcc tgggtggact gggcgccggg
     3061 ctgcttgcgg atctggtaca gcaggtcctg gaactcggca cggtcgcgct tgaagccggt
     3121 ggtcgaaacg ttcgccaggt tgttggagat ggtggtcagg ttcatgtcct gggcggacag
     3181 accggtttta ctgacccaaa gtgccggaag cataagtgtt ctcctgaagc gtcgacgtca
     3241 tgacgctact acgggtgatt agctggactg caggactctt gccgccgcag tcgcatcctc
     3301 ttcggcggta cgcatcatct tcacgtgcag ttcgaattgc cgagacagcg agagaatggc
     3361 cgtcatctct tccacggcgt tcacgttgct ggcttctagg aagccggaga ccactcgcac
     3421 gttggcgtcc ggcgccagcg gctcggtctg atccttgaca cggatcatgc cgtcgaggcc
     3481 cttttccagg gtgctcggat cgggattgac cagtttgatg cggtccacct cggccatcac
     3541 gttcggcgct tcgccaaggg cacggatgct gatggtgccg tcggcgccga tttccacctt
     3601 ctgctcgggc ggcacggcga tcggcccgcc attgccgagc accggcaagc cgctgccggt
     3661 acgcaggatg ccgagggcgt cgatctgcat ggcggcggta cgtacgtacg cctcgctacc
     3721 gtccgccgcc tgcacggcga cccagccttg gccctcgacg gccacatcca ggtcgttgcc
     3781 ggtttcctgc agcgttcccg ccgtgaagtc ggtgcccgga cgctcgctca tggcgtacac
     3841 gcgcgccgga aagtgatcgc cgaatacggg catcgagcga gcctgctcga agtcacgctt
     3901 gaaaccggtc gtcgaaacat tcgccagatt gttggcatgc gcgcgcatgg ccaacgtgtt
     3961 ctctttggcg cccgtcatgg agacgtacag catcttgtcc atggtggtcc tccgctggga
     4021 cattgacgcc ccgtgtgcta ttggcaggta ttcagcaatc cctatgccaa cgccgcgaaa
     4081 aaacccataa gtaactgata gatataggga aacagaaaac aaagaagccc cgcgaggggc
     4141 ttcgagtcgg gaaagcggcg atccgctgcc gccagcggca acggacttgc cgccgccggg
     4201 atcaacgcag gttgatgatg gtctgggtga tggcgctttc ggtctcgatg gtcttggcgt
     4261 tcgcctggta attacgctgc gccacgatca ggtcgaccag ctcggtggag atatccacgt
     4321 tggaagcctc cagcgcaccg gactggaggg cgcccagggt gccggagcgc ggcgtgccga
     4381 tcaccggctc gccggattcc gaggattgca cccaggaagt cttgccgacc ggggtcagcc
     4441 cctgcgggtt ggcgaagttg gctagcacca cctggccctg gatcttcgac tggccgttgg
     4501 tgtagcgggc gaacacgttg ccctcggcgt cgatctccag gccggacagc tgaccggtgg
     4561 tgtagccgtc ctgctcgatg ctgttcaccg cgaaggcgct ggaatactgg gtggagccgc
     4621 gcatgtcgag gtcgatgtcc gaggcggcgg caccgttggc ggcccacacc ggcggcgtgc
     4681 cgccatccga ctgcgccggc acccaatcgc tgagcgtcag cacgttgtcg gcgatggaga
     4741 agccggcgcc ggttgtcggc gtgcccggca ccatggtgcc cagattgccg ctgtcatcga
     4801 agggcaccgc cacggtgtag ggctcggtgg acgcggggtc ggacgggttg cgaccgtcga
     4861 ccagcacgtt catggtccag ttg
//
LOCUS       DATIHC010000608         2351 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36731, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000608 DATIHC010000000
VERSION     DATIHC010000608.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2351
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36731"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..253
                     /locus_tag="VLF16_10120"
     CDS             <1..253
                     /locus_tag="VLF16_10120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010482873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HSX71277.1"
                     /translation="TNLENGQSSVLKARGEIGARLNVVDSTITSNEDLSLINASIRSD
                     LEDLDYAEALSRLSLQSVVLEAAQQSFVRISSLSLFNKL"
     gene            302..1633
                     /locus_tag="VLF16_10125"
     CDS             302..1633
                     /locus_tag="VLF16_10125"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003247073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose/GDP-mannose dehydrogenase family
                     protein"
                     /protein_id="HSX71278.1"
                     /translation="MKISVFGAGYVGLVQAAVLANVGHDVLCVDVDAEKVESLKRGVM
                     PIYEPGLEGLVNSNAAEGRLHFTTRVVDAVEHADIHFIAVGTPPDAQGMADLRYVYEV
                     AEAIGQHMSRDKVVISKSTVPVGTADEIKRRIGAALQARGREDLVIDVVANPEFLKQG
                     AAVSDCQRPDRIIVGADSDRGVQVLQELYAPFNRNREKIILMDVRSAELTKYAANSFL
                     ATKISFMNEMANLAELFEADIEMVRKGIGADPRIGYDFIYPGCGYGGACFPKDVRALK
                     ESASRVGYEPAILRAVESVNERQKRKLVANIQSCYGEDLRGRVFALWGLAFKANTGDM
                     REAPSRALLEGLWQAGARVRAFDPEAMPECRRLYGERDDLHLVDSKEEALAGADALVV
                     VTDWQSFKAPDFDLLRQELRDARVFDGRNLYDPQVMRRYGLRYHSIGRSPV"
     gene            1761..>2351
                     /gene="rfbF"
                     /locus_tag="VLF16_10130"
     CDS             1761..>2351
                     /gene="rfbF"
                     /locus_tag="VLF16_10130"
                     /EC_number="2.7.7.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012315549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047343 - glucose-1-phosphate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate cytidylyltransferase"
                     /protein_id="HSX71279.1"
                     /translation="MKAVILAGGLGTRISEESHLRPKPMIEIGGKPILWHIMKIYSHH
                     GIQDFVICLGYKGYVIKEYFANYFLHMSDVTFDMSSNTMEVHQRYVEPWRVTLVNTGE
                     DTLTGGRLRRVREHLGDEPFCFTYGDGVADVDIRALIDFHQAHGKPATVTAIQPPGRY
                     GALNMDGDRVGAFQEKPAGDGSWINGGFFVLDPSVID"
BASE COUNT          429 a          751 c          766 g          405 t
ORIGIN      
        1 gaccaacctg gaaaacggcc agtcctcggt gctcaaggcg cgcggcgaga tcggcgcgcg
       61 cctcaacgtg gtggactcga ccatcaccag caacgaagac ctgtcgctga tcaatgccag
      121 catccgctcg gatctggaag atctcgacta cgccgaggcc ctgtcgcgcc tgtcgctgca
      181 gtcggtggtg ctggaagcgg cgcagcagag cttcgtgcgg atttcctcgc tgagcctgtt
      241 caacaagttg taagacccgt gcgctagcct ctaggcgagc actcgttcag acaggtaggt
      301 catgaagata tcggtattcg gtgcgggtta tgtggggctg gtgcaggcgg cggtgctggc
      361 gaatgtcggt cacgacgtgc tctgcgtgga cgtcgatgcg gaaaaggtcg agtcgctcaa
      421 gcgcggcgtg atgccgatct acgagcccgg cctggaaggg ctggtcaaca gcaatgccgc
      481 cgaggggcgc ctacacttca ccacccgggt ggtcgacgcc gtcgagcatg cggacatcca
      541 tttcatcgcc gtgggcacgc cgccggatgc ccagggcatg gccgatctgc gatatgtcta
      601 cgaagtggcc gaggccatcg gccagcacat gtcccgtgac aaggtggtga tcagcaagtc
      661 caccgtgccg gtgggcaccg ccgacgagat caagcgtcgc atcggcgccg cgctgcaggc
      721 ccgcggccgc gaggatttgg tgatcgacgt ggtcgccaac ccggaattcc tcaagcaggg
      781 cgccgccgtg tccgactgcc agcgaccgga tcgcatcatc gtcggcgccg acagcgatcg
      841 cggcgtccag gtgctgcagg agctgtacgc gccgttcaac cgcaaccgcg aaaagatcat
      901 cctgatggac gtgcgcagcg cggagctgac caagtacgcg gccaactcct tcctcgccac
      961 caagatctcc ttcatgaacg aaatggccaa cctggccgag ttgttcgagg cggacatcga
     1021 gatggtgcgc aagggcatcg gcgccgatcc acgcatcggt tacgacttca tctacccggg
     1081 ctgcggctac ggcggcgcct gtttccccaa ggacgtgcgc gcgctcaagg agtcggcctc
     1141 gcgggtcggc tacgagccgg ccatcctgcg ggcggtggag tcggttaacg agcggcagaa
     1201 acgcaagctg gtcgccaaca tccagagctg ctatggcgag gatctgcgcg gtcgcgtctt
     1261 cgccctgtgg ggcctggcct tcaaggccaa caccggcgac atgcgcgagg cgcccagccg
     1321 cgcgctgctg gaagggctgt ggcaggccgg cgcccgggtt cgcgcgttcg accccgaggc
     1381 gatgcccgaa tgccgccgcc tgtacggcga gcgcgacgac ctgcatctgg tcgacagcaa
     1441 ggaagaggcg ctggccggcg ccgatgcgct ggtggtggtg accgactggc agagcttcaa
     1501 ggcgccggat ttcgatctgc tgcgccagga gctgcgggac gcccgcgtgt tcgacggccg
     1561 caatctctac gacccgcagg tcatgcgccg ttacggcctg cgctaccact ccatcggccg
     1621 ctcgccggtc tgattcccgc cctcgctcga caagcaggcc acgcagatgc gtggcctgct
     1681 tattgctata cctgtatatc ggacaacaaa atgtcgacta attgacggtt ggtcgggtat
     1741 ccgcggtcga gggagtagcg atgaaggcgg tcattcttgc cggtgggttg ggcacgcgta
     1801 tcagcgagga gtctcacctg agacccaagc cgatgatcga gatcggcggc aagccgatcc
     1861 tctggcacat catgaagatc tactcccatc acggcatcca ggacttcgtg atctgcctcg
     1921 gttacaaggg ctacgtgatc aaggagtact tcgccaacta cttcctgcac atgtccgacg
     1981 tgaccttcga catgtcgagc aacaccatgg aagtccacca gcgctacgtc gaaccctggc
     2041 gggtaaccct ggtcaacacc ggagaggaca ccctgaccgg tggccggctg cgcagggtgc
     2101 gcgagcacct gggtgacgag ccgttctgct tcacctatgg cgatggcgtg gcggatgtcg
     2161 acatccgtgc gctgatcgac ttccaccagg cccatggcaa gccggccacc gtgaccgcca
     2221 tccagccgcc gggccgctac ggcgccctga acatggacgg cgaccgtgtc ggagccttcc
     2281 aggaaaagcc cgccggcgac ggctcctgga tcaacggcgg gttcttcgtc ctcgaccctt
     2341 cggtcatcga c
//
LOCUS       DATIHC010000609         2514 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8812, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000609 DATIHC010000000
VERSION     DATIHC010000609.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2514
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8812"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1039
                     /gene="hisC"
                     /locus_tag="VLF16_10135"
     CDS             <1..1039
                     /gene="hisC"
                     /locus_tag="VLF16_10135"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HSX71280.1"
                     /translation="VEELARELSLDPAGIVKLASNENPLGPSPKALEAIRAELAELTR
                     YPDGNGFELKSRLAARCGVAPAQVTLGNGSNDILDLVARAWLAPGLNAVFSQYAFAVY
                     PIVTQAVGAQGKVVPAREHGHDLEAMLAAIDANTRVVFVANPNNPTGTWFGPDALESF
                     LARVPENVLVVLDEAYIEYAEGDELPDGLDYLARYPNLLVSRTFSKAYGLASLRVGYA
                     LSSPQVADALNRVRAPFNVNSLALAAACAALDDADYLAASRRTNDAGMAQLEEGFRRL
                     GLTWIPSRGNFIAVDFARDAAPINQALLQAGVIVRPVAGYGMPTFLRVSIGTEQENAR
                     FLEALEQMLRG"
     gene            1032..>2514
                     /locus_tag="VLF16_10140"
     CDS             1032..>2514
                     /locus_tag="VLF16_10140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012075022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004665 - prephenate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_function: GO:0008977 - prephenate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006571 - tyrosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase/arogenate dehydrogenase
                     family protein"
                     /protein_id="HSX71281.1"
                     /translation="MADAMPLQQASRRLGRLVVVGLGLIGGSFAKGIREKGLFSEVVG
                     VDLDAESRRLAVELGVVDRCETELSAACQGAAVIQLAVPILAMEKVLAQLAQCDLGDA
                     VLTDVGSAKGNVVRAARLAFGGEVKRFVPGHPIAGSEQSGVEASNAELFRRHKVILTP
                     QPYTDAEALALIDGLWRALGADVEHMEVEHHDQVLAATSHLPHLLAFTLVDSLAKRSE
                     NLEIFRYAAGGFRDFTRIAGSDPVMWHDIFLANREAVLRTLDAFRDDLDALRGAVDAG
                     DGRQLLGVFTRARYAREHFSKILARRAYVDAMHSNDLIYLANPGGSLSGRIRVPGDKS
                     ISHRSIMLGSLAEGTTQVEGFLEGEDALATLQAFRDMGVVIEGPHHGKVTIHGVGLNG
                     LKPPPGPLYLGNSGTSMRLLSGLLAAQPFDTVLTGDASLSKRPMNRVAKPLREMGAVI
                     ETGVEGRPPMHIKGGQRVLSFEKAFHLSGALGQRAEHDRAVRDG"
BASE COUNT          389 a          840 c          844 g          441 t
ORIGIN      
        1 ggttgaagaa ctggcgcgcg agctgagttt ggaccccgca ggaatcgtca agctggccag
       61 caacgagaac ccgctgggcc cgtcgcccaa ggcgctggaa gcgatccgcg ccgaactggc
      121 cgagctgacc cgttacccgg acggcaatgg cttcgagctg aagtccaggc tggccgcacg
      181 ctgtggtgtg gctccggccc aggtgaccct gggcaacggc tccaacgaca ttctcgatct
      241 ggtcgcccgc gcctggctgg cgccggggct gaatgccgtg ttcagccagt acgccttcgc
      301 cgtgtacccg attgttaccc aggcggtcgg tgcccaaggc aaggtggtgc cggccagaga
      361 gcatgggcac gacctcgaag ccatgctggc ggccatcgac gccaacaccc gtgtggtgtt
      421 cgtcgccaac ccgaacaacc cgaccggcac ctggttcggc ccggacgcgc tggagtcctt
      481 cctcgctcgt gtgccggaga acgtgctggt ggtgctggac gaggcctata tcgaatacgc
      541 agagggtgac gagctgccgg acggcctcga ttacctggcg cgctacccga acctgctggt
      601 ctcgcgcacc ttctccaagg cctacggcct ggcctcgctg cgcgtcggct acgcgctgag
      661 ctcgccgcag gtcgccgatg cgctcaatcg cgtgcgtgcg ccgttcaacg tcaatagcct
      721 ggccctggcc gccgcctgcg ccgcgctgga cgatgccgac tacctggctg ccagtcgacg
      781 caccaacgat gccggcatgg cgcagttgga agagggcttc cgccgcctgg gcctgacctg
      841 gattccatcc aggggcaact tcatcgccgt cgacttcgcc cgtgatgccg caccgatcaa
      901 ccaggctctg ctgcaggccg gcgtgatcgt gcgtccggtg gccggctacg gcatgccgac
      961 cttcctgcgc gtgtccatcg gcactgagca ggagaacgcc cgcttcctcg aggcgctgga
     1021 gcaaatgctc cgtggctgat gcaatgccgt tgcaacaagc ctcgcgcaga ctcggccgcc
     1081 tggtggtggt ggggcttggc ctgatcggcg gctccttcgc caaggggatt cgcgagaaag
     1141 ggctgttcag cgaagtggtg ggagtggatc tggacgccga gtcgcgtcgt ctagccgtgg
     1201 agctgggcgt ggtcgaccgc tgcgagacgg agctgtcggc cgcctgtcag ggcgccgcgg
     1261 tgatccagct ggcggtgcct atcctggcca tggaaaaggt gctggcccaa ctggcgcagt
     1321 gcgaccttgg cgatgcggtg ctcaccgacg tgggcagcgc caagggcaat gtggtgcgcg
     1381 cggcgcgcct ggccttcggg ggcgaggtga agcgcttcgt tcccggtcat ccgatcgccg
     1441 gctccgagca gagcggggtg gaggcttcca atgccgaact gttccgccgt cacaaggtca
     1501 tccttactcc gcagccgtac actgatgccg aggcgctggc gctgatcgac ggcctgtggc
     1561 gcgccttggg cgccgacgtg gaacatatgg aggtggagca ccacgatcag gtgctcgctg
     1621 ctaccagcca cttgccgcat ctgctggcct ttaccctggt cgactcgctg gccaagcgca
     1681 gcgagaacct ggagattttc cgttacgccg ccggcggctt ccgcgatttc acgcggatcg
     1741 ccggcagcga tccggtgatg tggcacgaca tcttcctcgc caatcgcgag gcggtgttgc
     1801 gcaccctcga cgcgtttcgc gacgacctcg acgccctgcg cggcgcggtc gacgctgggg
     1861 acgggcgtca gctgctgggc gtgtttaccc gcgcccgtta cgcccgcgag catttcagca
     1921 aaatcctggc ccgcagggcc tatgtggacg ccatgcactc gaacgacctg atctacctcg
     1981 ccaatcccgg tggttccctc tccggccgta tccgcgtacc gggcgacaag tccatctcgc
     2041 accgctcgat catgctcggc tcgctggccg agggcaccac tcaggtggaa ggctttctcg
     2101 aaggagagga cgcgctggcc accctgcagg ccttccgcga catgggcgtg gtgatcgaag
     2161 gcccgcatca cggcaaggtg accattcacg gcgtgggcct gaatggcctg aagccgccgc
     2221 ccggtccgct gtacctgggc aactccggca cttccatgcg cctgctctcc ggcctgctgg
     2281 ccgcgcagcc gttcgatacc gtgctgaccg gcgacgcctc tttgtccaag cgcccgatga
     2341 accgcgtggc caagccgctg cgcgagatgg gcgcggtgat cgagaccggt gttgaaggtc
     2401 gtccgccgat gcatatcaag ggtggccagc gcgtcctctc cttcgagaaa gccttccacc
     2461 tgagtggggc cctcggccag cgagccgagc atgatcgagc ggtgcgagat ggac
//
LOCUS       DATIHC010000610         4043 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8820, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000610 DATIHC010000000
VERSION     DATIHC010000610.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4043
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8820"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..818)
                     /gene="glyQ"
                     /locus_tag="VLF16_10145"
     CDS             complement(<1..818)
                     /gene="glyQ"
                     /locus_tag="VLF16_10145"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_064729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009345 - glycine-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HSX71282.1"
                     /translation="MSQTTPDVSTFQGLILALQSYWAEQGCVILQPYDMEMGAGTFHT
                     ATFLRAIGPETWNAAYVQPSRRPADGRYGENPNRLQHYYQFQVVLKPNPENIQDLYLE
                     SLRRIGVDTLVHDIRFVEDNWESPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGVECYP
                     VTGEITYGLERLAMYLQGVDSVYDLVYSDGPFGKVTYGDVFHQNEVEQSTFNFEHANV
                     DKLFDLFDFYESEANRLMELQLPLPAYEMVVKASHTFNLLDARRAISVTARQQY"
     gene            985..1536
                     /locus_tag="VLF16_10150"
     CDS             985..1536
                     /locus_tag="VLF16_10150"
                     /EC_number="3.2.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008725 - DNA-3-methyladenine glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HSX71283.1"
                     /translation="MPRCFWCNDDPLYIAYHDEEWGVPQRDPQWLFEMLLLEGFQAGL
                     SWITVLKKRERYRQVLFGFDPERLAAMTDAEIEERMQDPGIIRNRAKLRAARQNAQAW
                     LKLEDPAGLLWSFVGGAPKINHFSGRGDVPAVTPEAEVMSKALKKLGFTFVGPTICYA
                     YMQAAGMVMDHTTDCDRYHVLKG"
     gene            1592..2479
                     /locus_tag="VLF16_10155"
     CDS             1592..2479
                     /locus_tag="VLF16_10155"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014335795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase"
                     /protein_id="HSX71284.1"
                     /translation="MERLKGALVVGFLRLFALLPWGAVQAAGSAIGWLMWKLPNGSRD
                     VVRINLAKCFPELDPAERERLVGATLRDIGKTLTESACAWIWPVERTLKLVREVEGLE
                     VLQAALASGKGVVGVASHLGNWEVLNHYFCSQCKPIIFYRPPKLQALDELLQRQRAQM
                     GNRVAPSTKEGILSVIKEVRRGGVVGIPADPEPSRSSGLFVPFCAIQALTSKFVPGML
                     AGGKAVGIFLNAVRLPDNSGFKVIFEAVPEDMYSEDPAVSAAAMSRELERYVRAYPSQ
                     YLWSMKRFKKRPAGEKKWY"
     gene            2538..2804
                     /locus_tag="VLF16_10160"
     CDS             2538..2804
                     /locus_tag="VLF16_10160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003100272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HSX71285.1"
                     /translation="MDNKRDHLRTPLKVQLRIDHPLHGQMLVTTRDISESGVFVVIDD
                     AQRLLQIGEVVQGQVQGLPIPAPLVQMQVIRFEPSGVALRFQRD"
     gene            complement(2801..3133)
                     /locus_tag="VLF16_10165"
     CDS             complement(2801..3133)
                     /locus_tag="VLF16_10165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013713226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSX71286.1"
                     /translation="MTTPESLEKLLARGVDNALLRFGLGKAYLDGGDAERAAEHLQKC
                     LGFDPNYSAAWKLLGQACQRREMFEEARQAWHNGLEVARKRGDKQTEKEMMVFLRRLE
                     KVTGNEGR"
     gene            complement(3152..>4043)
                     /gene="trkA"
                     /locus_tag="VLF16_10170"
     CDS             complement(3152..>4043)
                     /gene="trkA"
                     /locus_tag="VLF16_10170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015079 - potassium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HSX71287.1"
                     /translation="GGPLVGQQLRQLREHMPNVDTRVAAIFRRNRPIMPKGDTVIEAD
                     DEVFFIAAKAHIRAVMSELRRLEDSYKRIVIAGGGHIGERLAEAIESRYQVKIIEMNA
                     TRCRHLSDNLESTIVLQGSASDRDLLVEENINEADIFLALTNDDEANIMSSLLAKRLG
                     ARKVMTIINNPAYVDLVQGGDIDIAISPQLATIGTLLTHVRRGDIESVHSLRRGAAEA
                     IEAIAHGDARSSKVVGKMIEEIALPPGTTIGAVIRDEEVLIAHDDTVIASGDHVILFL
                     VDKKYIRDVERLFQVGLTFF"
BASE COUNT          672 a         1277 c         1339 g          755 t
ORIGIN      
        1 atgtactgct ggcgcgcggt gaccgaaatg gcgcgacggg catcgagcag gttgaaggtg
       61 tgcgaggcct tgaccaccat ctcgtaggcc ggcagcggca gctgcagctc catcaggcgg
      121 ttggcctcgg actcgtagaa gtcgaacagg tcgaacagct tgtcgacgtt ggcgtgctcg
      181 aagttgaagg tggactgctc cacttcgttc tggtggaaca cgtcgccgta ggtgaccttg
      241 ccgaacgggc cgtcggagta gaccaggtcg tacaccgagt cgacgccttg caggtacatg
      301 gccaggcgct cgagaccgta ggtgatttcg ccggtaaccg ggtagcactc gacgccgccg
      361 acctgctgga aataggtgaa ctgggtgact tccatgccgt tcagccagac ttcccagccc
      421 aggccccagg cgccgagggt cggcgattcc cagttgtctt cgacaaagcg gatgtcgtgc
      481 accagggtgt ctacgccgat gcggcgcagc gactccaggt acaggtcctg gatgttctcc
      541 gggttcggct tgagcaccac ctggaactgg tagtagtgct gcaggcggtt ggggttctcg
      601 ccgtagcggc cgtcggccgg gcggcgcgag ggctgcacgt aggcggcgtt ccaggtctcc
      661 ggaccgatgg cgcgcaggaa ggtggcggtg tggaaggtgc cggcccccat ctccatgtcg
      721 tagggttgca ggatcacgca gccttgctcg gcccaatagc tctgcagggc gaggatcagg
      781 ccttggaagg tgctcacgtc gggcgttgtc tggctcacga attccaccgg tgtcgaggcg
      841 tttgcataaa gccgcgcagt ataccccaag gctgcgcggc aacgagggtg ccaccggcgc
      901 gagcggcagg ccggccatga gctgtattta catacagtat cgattggcta tagttcgctt
      961 cgattccttc acaggtgccc tgccatgccc cgctgcttct ggtgcaacga cgacccgctg
     1021 tacatcgcct accacgacga ggaatggggc gtgccgcagc gcgacccgca gtggctgttc
     1081 gagatgctct tgctggaggg tttccaggcg gggctgtcgt ggatcaccgt gctgaagaag
     1141 cgcgaacgct atcgccaggt actgttcggc ttcgaccctg agcgcctggc ggcgatgacc
     1201 gacgcggaga tcgaagagcg catgcaggac cccggcatca tccgcaaccg cgccaaactc
     1261 agggccgcgc ggcagaacgc ccaggcctgg ctcaagctgg aagacccggc cggcctgctc
     1321 tggtccttcg tcggtggcgc gccgaagatc aatcacttca gcggccgcgg cgacgtgccg
     1381 gcggtgacgc ccgaagccga agtcatgagc aaggctttga agaagctcgg cttcaccttc
     1441 gttggcccga ccatctgcta cgcctacatg caggccgccg gcatggtgat ggaccatacg
     1501 accgactgcg acaggtacca cgttctcaaa ggctgaaccc ttcggtcaca accgttacaa
     1561 tgcccgcctt ttgcgtttcc gggagttgtt cgtggagaga ttgaaaggcg ccctggtggt
     1621 cggctttctg cgcctgttcg ccctgctgcc ctggggtgcg gtgcaggccg ccggctcggc
     1681 catcggctgg ttgatgtgga agctgcccaa tggctcgcgc gacgtggtgc gcatcaacct
     1741 ggccaagtgt ttccccgaac tcgacccggc agagcgcgag cgcctcgtcg gcgcgaccct
     1801 gcgcgacatc ggcaagaccc tcaccgaaag tgcctgcgcc tggatctggc cggtcgaacg
     1861 cacgctcaaa ctggtgcgcg aggtcgaggg tctcgaggtg ctgcaggccg cgctcgcttc
     1921 gggcaagggc gtggtcggcg tggccagcca cctgggcaac tgggaggtgc tgaaccacta
     1981 cttctgctcc cagtgcaaac cgatcatctt ctaccgtccg ccgaagctgc aggccctcga
     2041 cgagctgctg cagaggcagc gcgcacagat gggcaatcgt gtggcgccct cgaccaagga
     2101 aggcatcctc agcgtcatca aggaggtgcg ccgcggtggt gtggtgggca ttcccgccga
     2161 cccggagccg agccgttcca gcggcctatt cgtgccgttc tgcgcgatcc aggcgctgac
     2221 cagcaagttc gtccccggca tgctcgctgg cggcaaggcg gtcgggatct tcctgaacgc
     2281 cgtgcgtctg ccggacaaca gcggcttcaa ggtgatcttc gaagcggtgc ccgaggacat
     2341 gtacagcgag gatccggccg tgtctgccgc ggccatgagc cgggaactcg aacgctatgt
     2401 gcgtgcctat cccagtcagt acctgtggag catgaagcgt ttcaagaagc gcccggcggg
     2461 cgaaaagaag tggtattgat gcgccgcgcg taactcagta ccgtcagagc actttttccc
     2521 acgacgacag gacaggcatg gacaacaagc gcgatcacct gcgtaccccg ctcaaggtcc
     2581 agctgcgtat cgaccatccg ctgcacgggc agatgctggt gaccacccgg gatatctccg
     2641 agagcggcgt gttcgtggtg atcgacgatg cccagcgcct gttgcagatc ggtgaagtgg
     2701 tccagggcca ggtccagggc ctgcctattc cggcgcccct ggtgcagatg caggtgatcc
     2761 gcttcgagcc cagcggcgtc gccctcaggt tccagcgcga ctagcgaccc tcgttgcccg
     2821 tcaccttctc caggcgacgc aggaacacca tcatttcctt ttcggtctgc ttgtcgccgc
     2881 gtttgcgcgc cacttccagg ccgttgtgcc atgcctggcg cgcttcctcg aacatttccc
     2941 gacgctggca cgcctggccc agcagcttcc acgccgccga ataattggga tcgaagccca
     3001 ggcatttctg caggtgttcg gccgcgcgct cggcatcgcc gccgtcgagg taggccttgc
     3061 ccaggccgaa gcgcagcagg gcgttgtcca ccccacgggc cagcagtttt tccagggact
     3121 cgggcgtggt catgccgggg cgcctcgtgg ctcagaagaa ggtcagaccg acctggaaca
     3181 ggcgctccac gtcgcggatg tacttcttgt cgacgaggaa cagtatcacg tggtcgccgg
     3241 acgcgatgac cgtgtcgtca tgggcgatca gtacctcctc gtcgcggatc accgcgccga
     3301 tggtggtgcc cggcggcagg gcgatctcct cgatcatctt gccgaccacc ttgctcgagc
     3361 gcgcgtcgcc atgggcgatg gcctcaatgg cctcggccgc gccacgccgc aggctgtgca
     3421 cgctctcgat gtcaccgcgg cgcacgtggg tcagcagggt gccgatggtg gccagctgcg
     3481 ggctgatggc gatatcgata tcgcctccct ggaccagatc gacgtaggcc gggttattga
     3541 tgatggtcat caccttgcgc gcgcccaggc gcttggccag cagcgaggac atgatgttgg
     3601 cctcgtcgtc gttggtcagg gcgaggaaga tgtcggcctc gttgatgttc tcctccacca
     3661 gcaggtcgcg gtcggaggcg ctgccctgca gcacgatggt gctttccagg ttgtccgaga
     3721 ggtggcggca gcgcgtcgcg ttcatctcga tgatcttcac ctggtagcgg ctttcgatgg
     3781 cctcggccag gcgctcgccg atatgcccgc cgccggcgat gacgatgcgc ttgtagctgt
     3841 cctcgaggcg gcgcaactcg ctcatcaccg cgcggatgtg cgccttggcg gcgatgaaaa
     3901 acacctcgtc atcggcctcg atcaccgtgt cgcccttcgg catgatcggc cgattgcggc
     3961 ggaaaatggc ggccacgcgg gtgtcgacgt tgggcatgtg ctcgcgcagc tggcgcagct
     4021 gctgaccgac cagcggcccg ccg
//
LOCUS       DATIHC010000611         1870 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13247, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000611 DATIHC010000000
VERSION     DATIHC010000611.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1870)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1870
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13247"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..405)
                     /locus_tag="VLF16_10175"
     CDS             complement(<1..405)
                     /locus_tag="VLF16_10175"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSX71288.1"
                     /translation="MTTTPLLRVQGLTKTFRMYHLDSMLHAFEGVSFDLHEGEFLLLR
                     GHNGAGKSTLLRTIWRSYLPVAGHVYYCSRHGEIDLANAADVDIALLRREEIGFVTQF
                     LNARPRVAAQDIVAEPLRLAGVSQAEALDQARH"
     gene            complement(416..1237)
                     /locus_tag="VLF16_10180"
     CDS             complement(416..1237)
                     /locus_tag="VLF16_10180"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSX71289.1"
                     /translation="MSLDLGLPALERAAPRLMRAEPLLTMRDISKTYGDVRALRHVDA
                     TVYPGEVMGIVGESGSGKSTLLRMMNLEDTPDSGDYTLRLPGRENENLFDLARYERRM
                     LCARHIGIVYQNPHLGLLMMHSSSGNVAERLLIAGERSFDVLRDKAREALDASEFPLD
                     RMDARPIELSGGMQQRVQLAKAIALEPALLLLDEPTTGLDVSVQALVLDTLKRLQRDR
                     KITMVLVSHDLGVIRTMADRVMVMRHGEVVEQGLPDQVFQDPQHAYTQQLVHAKL"
     gene            complement(1234..>1870)
                     /locus_tag="VLF16_10185"
     CDS             complement(1234..>1870)
                     /locus_tag="VLF16_10185"
                     /inference="COORDINATES: protein motif:HMM:NF017788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0019700 - organic phosphonate catabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-D-ribose 1-methylphosphonate 5-phosphate
                     C-P-lyase PhnJ"
                     /protein_id="HSX71290.1"
                     /translation="RVSGAAETWDTLDASIVQSRHRVPEETMREDQILVLQVPNPEPL
                     RGVEPNISIARQMHADADYGKLWLTLYEQIVRKGRIMQGASYPAMVNGRHVMTPSPIP
                     RWDVPKLNMARHLTFLSAGREKRLHAVPPYTRVEPLVFSDRPYLVEDHADLTCRRSGV
                     QGYFMNELPQDGGGSVFEVSDSNLGIKTLNKAEGTPSEIGETWYRNGEFSA"
BASE COUNT          339 a          543 c          659 g          329 t
ORIGIN      
        1 gtggcgggcc tgatcgagcg cctcggcttg cgacacgcca gccaggcgca gcggctcggc
       61 gacgatgtcc tgcgcggcaa cgcgcgggcg ggcattgagg aactgggtga caaagccgat
      121 ttcctcgcgg cggagaagag cgatgtcgac atcggcagca ttggcgaggt caatctcgcc
      181 atggcgggag caatagtaga catgcccggc aaccggcagg tagctgcgcc agatggtacg
      241 cagaagcgtc gacttgccgg cgccgttgtg gccgcgcagc aggaggaact cgccttcatg
      301 gaggtcaaag ctgacgcctt caaaggcatg cagcatgctg tcgaggtggt acatgcggaa
      361 ggtcttggtg agaccctgaa cgcgcaggag tggcgtggtt gtcatgggtc tggcctcaga
      421 gcttggcgtg gacgagttgc tgggtatagg cgtgctgcgg gtcctggaag acctggtcgg
      481 ggaggccctg ttccaccact tcgccatggc gcatgaccat gacccggtca gccatggtgc
      541 ggatgacgcc gaggtcgtgg ctgaccagaa ccatggtgat cttgcgatcc cgctgcaggc
      601 gcttgagcgt atcgagcacc agagcctgta ccgagacgtc aagaccggtg gtcggttcgt
      661 cgagcagcaa cagcgccggt tcgagggcaa tggccttggc cagctgcacg cgctgctgca
      721 tgccgcccga gagttcgatg gggcgcgcat ccatgcggtc gagcgggaac tcggaagcgt
      781 cgagcgcctc gcgggccttg tcgcgcagca cgtcgaagct gcgctcgcca gcgatgagaa
      841 ggcgctcggc gacattgccg ctggacgaat gcatcatcag caggcccaga tgcgggttct
      901 ggtagacgat gccgatatgg cgggcgcaga gcatgcggcg ctcgtagcgg gcgagatcga
      961 aaaggttctc gttctcgcgg cccggcaggc gcaatgtgta gtcgccgcta tcgggcgtgt
     1021 cctctaggtt catcatccgc aacagcgtcg acttgcccga gccgctttcg cccacaatgc
     1081 ccatgacttc gccgggatag accgtggcat cgacatggcg cagggcgcgg acgtcaccat
     1141 aggtcttgga aatgtcgcgc atggtgagaa gcggttcggc ccgcatcagg cggggtgcgg
     1201 cgcgctccag cgccggaagg cccagatcaa ggctcatgct gaaaactccc cgttgcgata
     1261 ccaggtttcg ccgatctcgg acggcgtccc ttcggccttg ttgagggtct tgatccccag
     1321 attgctgtcg gagacttcga acaccgaacc accgccatcc tgcggcagct cgttcatgaa
     1381 atagccctgt acgcccgagc ggcggcaggt gagatcggca tggtcttcga cgagatatgg
     1441 gcgatcggag aaaaccagcg gttcgacccg cgtatagggc ggcacggcat ggagacgctt
     1501 ttcgcggccg gccgagagga aggtcaggtg cctggccata ttgagcttgg gcacgtccca
     1561 acgcgggatg ggcgaggggg tcatgacgtg gcggccattg accatggcgg ggtaggatgc
     1621 gccctgcatg atgcggccct tgcgcacgat ctgctcgtaa agcgtgagcc agagcttgcc
     1681 gtaatcggca tcggcatgca tctgccgggc gatggagata ttgggctcga ccccgcgcag
     1741 cggctcggga ttggggacct gcagcacgag tatctgatcc tcgcgcatgg tctcctccgg
     1801 cacacggtga cgcgactgga cgatcgaggc gtcgagcgtg tcccaggttt cggcggcgcc
     1861 cgaaacacgg
//
LOCUS       DATIHC010000612         4973 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43680, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000612 DATIHC010000000
VERSION     DATIHC010000612.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4973)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4973)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4973
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43680"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3120)
                     /locus_tag="VLF16_10190"
     CDS             complement(<1..3120)
                     /locus_tag="VLF16_10190"
                     /inference="COORDINATES: protein motif:HMM:NF012901.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I polyketide synthase"
                     /protein_id="HSX71291.1"
                     /translation="MSSAPIAIIGMACIFPQAPDLAAFWRNILAGADAVGEPQDEWEA
                     QRYLDSGRINTQHGGYLNDLYRFDPREFGIMPNSVDGGEPDQFLALKVAFDALQDAGY
                     AGEGVDHRDTGIILGHSTYLHRGQVSHIQNHIVLDQTLELLKAAQPSLSADDLARLRI
                     ALQKQLPPSNTDIAPGLVPNVMTGRIANRLNLRGPNYIVDAACSSSLLAVNAAMDELR
                     SGRSRLMIAGGVNASLPAEVSVIFTQLGALSGRGKVRPFEQGSDGTLLGEGLGMVVLK
                     RVDDALADGDRIYAVLRGIGQASDGRGTGLLAPSEEGEALSIRRAYESSGVDPASISL
                     VEAHGTGIPLGDKTEIAALRSVLGERQGLLGSVAIGSVKSMISHCIPAAGIAGLIKTS
                     LALHHKVLPPTLCGTVNPALGIDATPLYVNTVSKPWIAKPQSPRRAGINSFGFGGINT
                     HAVLEEAPAAAPRPLSFARRECELCVFAAADEAALLARLQQVQAYIENNPGVALLDLA
                     ATLATRDSADKPARLAVLAGDVAELAKKLQQAAKKIAEAKSPRWMTRTGLIFSSQPLQ
                     GKLAFLFPGEGSQYLNMLVDLAQQFPEVREWFDFWQGLYDEQPGSTRTDILFPPASEL
                     DDELRQRLEARLFDMDVGSEAVFVASQALFSLLGALGVEPDAMLGHSTGESSALAASG
                     AMAFSDRGQLADFIRELNKVYRGVLDGGGIATGALLTVGALKREVVDRHIAARTEPVV
                     VAMDNCQNQLVLFSDRATIEALLRLLGEEGGICSILPFDRAYHTPLFAAVTSAFHQYY
                     RDVGLQAPKTPLYSCASADLFPTEPEAVCELAAAQWSSTVRFRETIAHMHRDGVRYFV
                     EVGPSGNLTGFVNDILGGEEYLAIASNARKRSGVEQLFNLLGSLFANGKAVDLGRLYR
                     GIACRVLDLDQPLPQPKRGMRVKNTMPVVHVNESLGELLRELFQPVAAVPAQPLAASP
                     TAPLLVDIQRQGERLSARCPLWSTDRFLADHVLSGPGSYHQPELQGLACVAMMASLEI
                     MAEACALLAG"
     gene            complement(3120..>4973)
                     /locus_tag="VLF16_10195"
     CDS             complement(3120..>4973)
                     /locus_tag="VLF16_10195"
                     /inference="COORDINATES: protein motif:HMM:NF020243.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSX71292.1"
                     /translation="VFRTQADEVVAEDLLPPVENAVVLATGGARGITAEVLREIARPG
                     NVLVLTGRSPLADEDVATAGLRDERQLRQHFIGEVRAGRLAMTPAEMQKRTAALIGLR
                     EMRSNIADLRARGATVEYLAVDATDEAALAAAIDGIRQRHGKLSGVVHGAGVIEDKLL
                     EDKTPDSWMRVVGTKVLGMLLLHKLVRVEELEFFAVFSSVAGRYGNSGQLDYATANEL
                     MSRLCCQLQRLWGDKTKLLSLNWGPWGPTLFGAGMVTAETENKFADKGVALVGAAQGR
                     RLFDEALRLKAGHAVEVVAGDGPWEGHEAEVGRWQEETVYTPQTARQPLLTQCRIEDG
                     EKGTQVLHFILDASHGYLQEHCIDGVPVLPAAVALEIIAEAATLMWPGWIVAEVAELR
                     LLKGVQLSEPTQALSLLINPPTYASSEGFDASISIRSGSGKQQRMHYRAAVKMAQHLP
                     EAPRHVLSEYHGRELPVAKAYQEWLFHGPRFQVIRGIRGLSSQGAAALMCPSSPQQWL
                     AGGRVEQQWIIDPAVLDAAPQMALLWARTFHDGSALPAQFGRVIRYVERLPERFHMDF
                     QCLPGEAQQVRANVFFSDDEGRLLLLIEDLQCIVDARLNRLGGTHLRKETE"
BASE COUNT          748 a         1674 c         1762 g          789 t
ORIGIN      
        1 gccggccagc agcgcgcagg cctcggccat gatttccagg ctggccatca tcgccacgca
       61 ggccaggccc tgcagctcgg gctgatggta ggaaccgggg ccggacagca cgtggtcggc
      121 gaggaagcgg tcggtggacc acagagggca ccgggcgctg agccgctcgc cctggcgctg
      181 gatatccacc agcagcggcg ccgtcgggct cgctgccagc ggctgcgcgg gcacggctgc
      241 gaccggctgg aacagttcgc gcagcagctc gccgagcgat tcgttcacat gcaccaccgg
      301 catggtgttc ttcacccgca tgccgcgctt gggctgtggc agcggctggt cgaggtcgag
      361 cacgcggcag gcgatgccgc ggtagagcct gccgaggtcc accgccttgc cgttggcgaa
      421 caggctgccg agcaggttga acagctgctc cacgccgctg cgcttacggg cgttggaggc
      481 gatggccagg tactcctctc cgccgaggat gtcgttgacg aagccggtca ggttgcccga
      541 gggaccgacc tcgacgaagt agcgcacgcc atcgcggtgc atgtgggcga tggtttcgcg
      601 aaagcgcacg gtgctcgacc actgcgccgc cgccagctcg cacaccgcct caggctcggt
      661 cgggaacagg tcggcactgg cgcaggaata cagcggcgtc ttcggcgcct gcaggccgac
      721 atcgcggtag tactggtgga aggcgctggt caccgcggcg aacagcggcg tgtggtaggc
      781 acggtcgaac ggcaggatcg aacagatgcc gccctcttcg ccgagcagcc gcagcagggc
      841 ctcgatggtg gcgcggtcgg aaaacagcac cagctggttc tgacagttgt ccatggccac
      901 caccaccggt tcggtgcggg ccgcgatgtg gcgatccacc acctcgcgct tgagcgcgcc
      961 aacggtgagc agcgcgccgg tggcgatgcc accaccgtcc agcacgccgc ggtagacctt
     1021 gttcagctcg cgaatgaagt cggccagctg gccgcggtcg ctgaaggcca tcgcgccgct
     1081 ggcagccagg gccgaggact cgccggtgct gtggccgagc atggcgtccg gctccacgcc
     1141 cagggcgccg agcaggctga acagggcctg gctggcgacg aacaccgcct cggagcccac
     1201 gtccatgtcg aacaggcgcg cttccaggcg ctggcgcagc tcgtcatcca gctcgctggc
     1261 cggcgggaac aggatgtcgg tgcgggtcga gccgggttgt tcgtcgtaca ggccctgcca
     1321 gaagtcgaac cactcgcgca cttcggggaa ctgctgggcc aggtcgacca gcatgttcag
     1381 gtactgcgag ccttcgccgg ggaacaggaa ggccagcttg ccctgcagcg gctggctgct
     1441 gaatatcagc ccggtgcggg tcatccagcg cgggctcttg gcctcggcga tcttcttcgc
     1501 cgcctgctgc agcttcttcg ccagttcggc cacatcgccg gccagcacgg ccaggcgcgc
     1561 cggcttgtcg gcactgtcgc gggtggccag ggtggcggcc aggtccagca gtgccacgcc
     1621 gggattgttc tctatatagg cctgtacctg ctgcagccgc gccagcagtg cagcctcgtc
     1681 ggctgcggcg aacacgcaca gctcgcactc gcggcgggcg aagctcaacg gccgcggggc
     1741 ggcggccggc gcctcctcca acaccgcatg ggtattgatg ccgccaaagc cgaacgagtt
     1801 gatgccggcg cggcgcgggc tctgcggctt ggcgatccag ggcttgctga cggtgttgac
     1861 gtacagcggc gtggcgtcga tgcccagtgc cgggttgacc gtgccacaca gggtcggcgg
     1921 cagcaccttg tggtgcaggg ccaggctggt cttgatcagg ccggcgatgc cggcggccgg
     1981 gatgcagtgg ctgatcatcg acttcaccga gccgatggcc acgctgccga gcaggccctg
     2041 gcgctcgccg agcacgctgc gcagggcggc gatctcggtc ttgtcgccga gcggaatgcc
     2101 ggtgccgtgg gcctcgacca gggagatgct ggccggatcg acgccgctgc tctcataggc
     2161 gcggcggatc gacagggcct cgccctcctc actcggcgcc agcaggccgg tgccgcggcc
     2221 atcgctggcc tggccgatgc cacgcagcac tgcgtagatg cggtcgccgt cggccagggc
     2281 gtcatccacg cgtttgagca ccaccatgcc caggccttcg ccgagcaagg tgccgtcgct
     2341 gccctgttcg aacgggcgca ccttgccgcg cccgctgagg gcgccgagct gggtgaagat
     2401 caccgagacc tcggccggca acgaggcatt gaccccaccg gcgatcatca ggcggctacg
     2461 cccgctgcgc agctcgtcca tggcggcgtt gaccgccagc agcgaggacg aacaggcggc
     2521 gtcgacgata tagttggggc cccgcaggtt aaggcggttg gcgatgcgcc cggtcatcac
     2581 gttgggcacc aggcccgggg cgatgtcggt attggacggc ggcagctgct tctgcagggc
     2641 tatgcgcagg cgcgccaggt cgtccgcact cagactcggc tgggcggcct tgagcagctc
     2701 cagggtctgg tcgaggacga tgtggttctg gatatggctg acctggccgc ggtgcaggta
     2761 ggtgctgtgg ccgaggatga tgccggtgtc gcgatggtcg acgccttcgc ccgcgtagcc
     2821 ggcatcctgc agggcgtcga aggccacctt gagggcgagg aactggtccg gctcaccgcc
     2881 atccaccgag ttgggcatga tgccgaactc gcgcggatcg aagcggtaca ggtcgttcag
     2941 gtagccgccg tgctgggtat tgatgcgccc ggagtccaga tagcgctgcg cctcccactc
     3001 gtcctgtggc tcgccgacgg catcggcgcc ggccaggatg ttgcgccaga aggccgccag
     3061 gtccggggcc tgcgggaaga tgcaggccat gccgatgatg gcgataggcg cgctgctcat
     3121 cactcggttt ccttgcgcag gtgggtgccg cccaggcgat tgaggcgcgc atcgacgatg
     3181 cactgcaggt cttcgatcag cagcagcagg cggccctcgt cgtcactgaa gaacacgttc
     3241 gcgcgcacct gctgggcctc gccaggcagg cactggaagt ccatatggaa gcgctcgggc
     3301 agccgctcta cgtagcggat cacccggccg aactgggccg gcagcgccga accgtcgtgg
     3361 aaggtgcgag cccagagcag ggccatctgc ggcgcggcat cgagcacggc cgggtcgatg
     3421 atccactgct gttcgacacg tccgccggcc agccactgtt gcggcgagct cgggcacatc
     3481 agcgccgcgg cgccctggct ggacaggcca cggatgccac gaatcacctg gaagcgcggg
     3541 ccgtggaaca gccactcctg ataggccttg gccaccggca gctcacgacc gtggtactcg
     3601 ctgagcacat ggcgcggcgc ctcgggaaga tgctgggcca ttttcaccgc ggcgcggtag
     3661 tgcatgcgtt gctgcttgcc gctgccggaa cggatgctga tgctggcgtc gaagccttca
     3721 ctgctggcat aggtcggcgg gttgatcagc agcgacaggg cctgggtcgg ctcgctcagc
     3781 tgcacgccct tgagcaggcg cagctcggcc acctcggcga cgatccagcc cggccacatc
     3841 agggtggcgg cctcggcgat gatctccagg gccacggccg ccggcagtac cgggacgccg
     3901 tcgatgcaat gttcctgcag gtagccgtgg ctggcgtcga gaatgaagtg caggacctgg
     3961 gtgccctttt cgccgtcctc gatgcggcac tgggtcagca gtggctgtcg ggcggtctgc
     4021 ggggtgtata cggtctcttc ctgccagcgg cctacctccg cttcgtgacc ttcccagggg
     4081 ccgtcgccgg ccaccacttc gaccgcatgg ccggccttca ggcgcagggc ctcgtcgaac
     4141 aggcggcggc cctgagcggc accgaccagg gccacgccct tgtcggcgaa cttgttctcg
     4201 gtctcggcag taaccatgcc ggcgccgaac agggtcggcc cccaggggcc ccagttcagt
     4261 gacagcagct tggtcttgtc gccccacagg cgctgcaact ggcagcacag gcggctcatc
     4321 agctcgttgg cggtggcgta gtcgagctgg ccgctgttgc cgtagcgccc ggccaccgag
     4381 ctgaacacgg cgaagaactc cagttcctcg acgcgcacca gcttgtgcaa caacagcatg
     4441 cccaacacct tggtgccgac cacgcgcatc cagctgtccg gtgtcttgtc ttccagcagc
     4501 ttgtcttcga tcaccccggc gccatgcacc acgccgctga gcttgccgtg gcgctggcgg
     4561 atgccgtcga tggcggcagc cagggccgcc tcgtcggtgg catccaccgc caggtattca
     4621 accgtcgcgc cgcgggcgcg caggtcggcg atgttgctgc gcatttcgcg caagccgatc
     4681 agcgcggcgg tgcgcttctg catttcggcc ggggtcatgg cgagacggcc ggcgcgcacc
     4741 tcgccgatga agtgctggcg cagctgccgc tcgtcccgca agccggcggt agcaacgtcc
     4801 tcatcggcca gcgggctgcg cccggtcagc accagcacat tgccggggcg ggcgatctcg
     4861 cgcagcacct cggcggtgat gccgcgggcg ccgccggtgg ccagcaccac ggcgttttcc
     4921 accggcggca gcaggtcctc ggcgacgacc tcgtcggcct gggtgcggaa cac
//
LOCUS       DATIHC010000613         1611 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36736, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000613 DATIHC010000000
VERSION     DATIHC010000613.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1611
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36736"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            102..1337
                     /locus_tag="VLF16_10200"
     CDS             102..1337
                     /locus_tag="VLF16_10200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008431639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HSX71293.1"
                     /translation="MDRQNKPVETALERLYREESRRVLATLIRLLGDFDLAEEALHEA
                     FRAAMEQWPEQGVPANPRAWLVSAGRFKAIDQLRRQARFQALDDVEEPAAGEAWNGEH
                     LEDDRLRLIFTCCHPALAPDAQVALTLREVCDLTTEEIASAFLATPPTIAQRIVRAKN
                     KIRDARIPYEVPGRRELPERLEAVLRVVYLVFNEGYFASSGDELTRQHLSAEAIRLGR
                     LLCELLPESEVRGLLALMLLQESRRAARSDAEGQPVLLEEQDRDLWDRALIAEGEAQI
                     KAAFDSGEIGPYCLQAAIAAVHAEAASVESTDWAQIVGLYDVLLGAAPSPVIELNRAV
                     ALAMRDGAETGLHQVEAILERGELADYHLAHAARADLNRRLGRWSEARAAYQRALQLS
                     QQGADRQFLERRLAELPGA"
     gene            1426..>1611
                     /locus_tag="VLF16_10205"
     CDS             1426..>1611
                     /locus_tag="VLF16_10205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020797067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HSX71294.1"
                     /translation="MKYLCLIYSDEKLLHSLPESPRDPECFDYAETVQQSGRLLAAEP
                     LEPVATATTVRVRGGKLS"
BASE COUNT          250 a          576 c          556 g          229 t
ORIGIN      
        1 ctccaatacc aagcgccgct gagcgcccgc cggtcgcgcg gagtgcagat cggcaccgca
       61 gtggttaggc tctggggtct accgtaccga cggacgcgcc gatggatcgc cagaacaagc
      121 ccgtagaaac agcgctggag cgcctgtacc gcgaggaatc ccgccgggtg ctggccaccc
      181 tgattcgcct gctgggcgac ttcgacctgg ccgaggaggc cctgcacgaa gccttccgcg
      241 ccgccatgga gcagtggccc gagcagggtg tgccggccaa cccgcgcgcc tggctggtct
      301 cggccggacg cttcaaggct atcgaccagc tgcgccgcca ggcgcgtttc caggccctcg
      361 acgatgtcga ggagccggcc gccggcgagg cctggaatgg cgagcatctg gaagacgacc
      421 gcctgcgcct gatcttcacc tgctgccacc cggccctggc gcccgacgct caggtggcgc
      481 tgaccctgcg cgaggtctgc gacctcacca ccgaggagat cgccagcgcc ttcctggcca
      541 cgccgccgac catcgcccag cgcatcgtgc gggccaagaa caagatccgc gacgcgcgca
      601 ttccctacga agtaccgggc cgccgcgagc tgcccgaacg cctggaggcg gtgctgcggg
      661 tggtctacct ggtgttcaac gagggctatt tcgccagcag cggcgacgag ctgacccgcc
      721 agcacctgtc cgccgaggcc atccgtctcg gccgcctgct ctgtgagctg ctgccggagt
      781 ccgaggtgcg cggcctgctg gcgctaatgc tgctgcagga gtcgcgccgc gccgcgcgta
      841 gcgatgccga gggccagccg gtgctgctgg aggaacagga tcgcgatctg tgggaccgtg
      901 cgctgatcgc tgagggcgag gcgcagatca aggcggcctt cgactccggc gagatcggcc
      961 cctactgcct gcaggccgcc atcgccgccg tgcatgccga ggcggcgagc gtcgagtcca
     1021 ccgactgggc gcagatcgtc ggcctgtacg acgtgctgct cggcgccgcg ccctcgccgg
     1081 tgatcgagct caaccgcgcc gtggccctgg ccatgcgcga cggcgccgag accggactgc
     1141 atcaggtgga ggccatcctc gaacgcggcg agctggccga ctaccacctg gcccacgcgg
     1201 cccgcgccga tctgaaccgc cgcctgggtc gctggagcga ggcgcgcgcc gcctaccagc
     1261 gcgccctgca gctgagccag cagggcgccg accggcagtt tctcgaacgc cgcctggccg
     1321 agttgccggg cgcctgaaga tttttttcgc ggccctgtcg aaatgccgat acgccgctcg
     1381 accagaggat gacagcagcg atttccgctg ccagggagga gagcgatgaa atatctgtgc
     1441 ctgatttata gcgacgagaa gctcctgcac agcctgccgg agagcccgcg cgatccggag
     1501 tgcttcgact atgccgagac cgtgcagcag agcggccgcc tgctggccgc cgagccgctg
     1561 gagccggtcg ccaccgccac cacggtgcgc gtgcgcggcg gcaagctgag c
//
LOCUS       DATIHC010000614         4055 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21780, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000614 DATIHC010000000
VERSION     DATIHC010000614.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4055)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4055)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4055
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21780"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..255)
                     /gene="tsaB"
                     /locus_tag="VLF16_10210"
     CDS             complement(<1..255)
                     /gene="tsaB"
                     /locus_tag="VLF16_10210"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HSX71295.1"
                     /translation="MTTLLALDTATEACSVALLHEGRVLSHYEVIPRLHAQRLLPMVR
                     QILDEAGVALSALDAIAFGRGPGAFTGVRIAIGVVQGLAFA"
     gene            complement(387..1034)
                     /gene="adk"
                     /locus_tag="VLF16_10215"
     CDS             complement(387..1034)
                     /gene="adk"
                     /locus_tag="VLF16_10215"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004017 - adenylate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HSX71296.1"
                     /translation="MRVILLGAPGAGKGTQAGFITKKFGIPQISTGDMLRAAVKAGTE
                     LGLQAKSVMDAGGLVSDDLIINLVKERIAQPDCANGFLFDGFPRTIPQAEAMKEAGVT
                     IDNVVEIAVDDEEIVQRIAGRRVHEASGRVYHVVYNPPKVEGKDDETGDELVQRKDDT
                     EETVRHRLSVYHSQTKPLVDFYQKLSAAQGTPKYSAIAGVGSVEEITAKVLEALS"
     gene            complement(1191..3827)
                     /gene="ppc"
                     /locus_tag="VLF16_10220"
     CDS             complement(1191..3827)
                     /gene="ppc"
                     /locus_tag="VLF16_10220"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008964 - phosphoenolpyruvate carboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0015977 - carbon fixation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HSX71297.1"
                     /translation="MAEIDARLREEVHLLGELLGKTIRNQLGDEFLDKVELIRQGSKA
                     GRQGSQAGGQQLRETLDGLSDDELLPVARAFNQFLNLANIAEQYHRIRRRRPDEAQPF
                     DDRVLAELLQRLVQGGHKREQLARQIGRLDIELVLTAHPTEVARRTLIQKYDAIAGHL
                     AALDHTDLSAAERAEVQLGLRRLIAEAWHTEEIRRNRPSPVDEAKWGFAVIEHSLWEA
                     VPSFLRKADQALHRACGLHLPLGAAPVRFASWMGGDRDGNPNVTAEVSRKVLLLARWM
                     AADLYLRDVDRLAAELSMQQASDELRVHVGVHPEPYRAVLKRLRERLRATRAWAEAAL
                     DDDVAPGPEVLHDNRELIDPLELCYQSLHACGMGVIAEGQLLDCLRRAACFGLFLVRL
                     DIRQDAARHAAALAEITDYLGLGNYSEWDEDQRLEFLQRELDNRRPLLPPQHRPSAET
                     AEVLETCRVIAAAPAASLGTYVISMAGAPSDVLAVQLLLKEAGLQRPMRVAPLFETLA
                     DLDNAGPAIDRLLGLHGYRARLHGPQEVMIGYSDSAKDAGTTAAAWAQYRAQEALVNI
                     CRRHEVELLLFHGRGGTVGRGGGPAHAAILSQPPGSVNGRFRITEQGEMIRFKFGLPA
                     LAEQNLNLYLAAVLEATLLPPPAPEPAWRGAMDRLAADGVAAYRAVVREHEQFVEYFR
                     QATPEQELGRLPLGSRPAKRRAGGVESLRAIPWIFAWTQTRLMLPAWLGWERALAKAI
                     DGGGRGLLEDMREHWPFFRTRIDMLEMVLAKADLSIATLYDERLVADELRPLGAHLRD
                     LLSQCRSLVLGLTHQSELLTHSPETREAITVRNIYLDPLHLLQAELLARSRLRENPVD
                     SPLEQALLVSVAGIAAGLRNTG"
BASE COUNT          648 a         1361 c         1415 g          631 t
ORIGIN      
        1 ggcaaaggcc aggccctgga ccacgccgat ggcgatgcgc acgccggtga aggcccccgg
       61 gccgcggccg aaggcgatgg catccagcgc cgacagcgcc acgccggcct cgtcgaggat
      121 ctgccggacc atcggcagca ggcgctgggc gtgcagacgc gggatcacct cgtaatggct
      181 gagcacccgg ccctcgtgca gcagggcgac ggagcaggct tcggtggcgg tatccagggc
      241 cagcagagtg gtcatcgggg catccggtcg ggcagaaaaa gggcggcatt ataaacgcca
      301 acggcccgcg attgcgggcc gtcgagcgag cggtgtgatc gagcgagctg gagctacccc
      361 cagctacgcc tgggccacgc agctatttag ctgagcgcct cgagcacctt ggcggtgatc
      421 tcttccaccg agccgacgcc ggcgatggcg ctgtacttgg gggtgccttg ggcggcggag
      481 agcttctggt agaagtccac cagcggcttg gtctgcgaat ggtagacgga caggcggtga
      541 cgcacggttt cctcggtgtc gtccttgcgc tggaccagct cgtcgccggt ctcgtcgtcc
      601 ttgccctcga ccttcggcgg gttgtagacc acgtggtaga cgcggccact ggcctcgtgc
      661 acgcggcgac cggcgatgcg ctggacgatc tcttcgtcgt cgacggcgat ctcgaccacg
      721 ttgtcgatgg tcacgccggc ttccttcatg gcctcggcct ggggaatggt gcgcgggaaa
      781 ccgtcgaaca ggaagccgtt ggcgcaatcc ggctgggcga tgcgctcctt gaccaggttg
      841 atgatcagat catcggaaac caggccgccg gcatccatca cgctcttggc ctgcaggccc
      901 agctcggtgc cggccttgac cgccgcacgc agcatgtcgc cggtggagat ctgcggaatg
      961 ccgaacttct tggtgatgaa accagcttgg gtacctttgc cggcaccggg cgcccccagc
     1021 agaatcacgc gcatcgaagt gctcctcaaa tagacagaaa agtcgtcgga ctcgcctcgt
     1081 ggggccaatc tcgttaatgg gtttccgcgt cgctgagcgg cgaaaggatg gccacgatac
     1141 acagcgcatc ggtgcggcac aagccaccga aagtcggagt cggagaggcc tcagccggtg
     1201 ttgcgcagcc ccgccgcgat gcccgccacg ctgaccagca aagcctgctc cagagggctg
     1261 tccaccggat tctcgcgcag cctggaacgg gccagcagct cggcctgaag caggtgcagc
     1321 gggtccaggt agatgttgcg cacggtaatc gcctcgcgcg tctccgggct gtgggtgagc
     1381 agctcggact gatgggtcag accgagcacc agactgcggc actgcgacaa taggtcgcgc
     1441 aagtgcgcac ccagtggtcg cagttcgtcc gcgaccagcc tctcgtcgta cagcgtggcg
     1501 atgctcaggt cggccttggc cagcaccatc tccagcatgt cgatgcgcgt gcggaagaac
     1561 ggccagtgct cgcgcatgtc ttccagcagg ccacgcccgc cgccgtcgat ggccttggcc
     1621 agcgcgcgct cccagcccag ccaggcgggc agcatcaggc gcgtctgggt ccaggcgaag
     1681 atccagggaa tcgcgcgcag gctctccacg ccaccggcgc ggcgcttggc cggacgactg
     1741 cccagcggca ggcgaccgag ctcctgttcg ggcgtggcct ggcggaaata ctcgacgaac
     1801 tgctcgtgct cgcgcaccac cgcgcggtag gcggccacac cgtcggcggc caggcgatcc
     1861 atggccccgc gccaggccgg ctcgggtgcg ggcggcggta gtagggtcgc ctccagcacg
     1921 gcggccaggt acaggttgag gttctgctcg gccagggccg gcaggccgaa cttgaagcgg
     1981 atcatctcgc cctgttcggt gatgcggaag cgtccgttca ccgagcctgg cggctgcgag
     2041 aggatcgccg catgggccgg gccgccgccg cgtcccacgg tgccgccacg gccgtggaac
     2101 agcagcagtt ccacctcatg acgacgacag atattcacca gcgcttcctg agcgcggtac
     2161 tgggcccagg cggcggccgt ggtgccggcg tccttggcag agtcggagta gccgatcatc
     2221 acctcctgcg gaccgtgcag gcgcgcgcgg tagccgtgca ggccgagcag gcggtcgatg
     2281 gcggggccgg cgttatccag gtcggccagg gtctcgaaca ggggtgcaac ccgcatcggt
     2341 cgctgcagcc cggcttcctt caatagcagt tgcaccgcca gcacgtcgga gggagcaccg
     2401 gccatggaga tgacgtacgt gccgagcgac gcggccggcg cggcggcgat cacccggcag
     2461 gtctccagca cttccgcagt ctcggccgag ggccggtgtt gcgggggcag cagcgggcga
     2521 cggttgtcca gttcgcgctg gaggaattcc aggcgctgat cctcgtccca ctcgctgtaa
     2581 ttgccgaggc cgaggtagtc ggtgatctcg gccagcgcgg cggcatgccg ggcggcgtcc
     2641 tggcggatgt ctaggcgcac caggaacagg ccgaagcagg ccgcacggcg caggcagtcg
     2701 agcagctgcc cttcggcgat cacgcccatg ccgcaggcat gcagcgactg gtaacagagc
     2761 tccagcggat cgatcagctc gcggttgtcg tgcagcacct ccgggcccgg cgccacgtcg
     2821 tcgtccagcg ccgcctcggc ccaggcacgg gtggcgcgca ggcgctcgcg cagccgcttg
     2881 agcaccgccc gatagggttc ggggtgcacg cccacatgta cacgcagctc gtcgctggcc
     2941 tgctgcatgg acagctcggc cgcgaggcgg tcgacgtcgc gcagatagag gtccgcggcc
     3001 atccagcggg ccagcagcag caccttgcgg ctgacctcgg cggtgacgtt ggggttgccg
     3061 tcgcggtcgc cgcccatcca ggaggcgaag cgcaccggcg cggcgcccag cggcagatgc
     3121 aggccgcacg cccgatgcag ggcctggtcc gccttgcgca ggaaactcgg cacggcctcc
     3181 cacagcgaat gctcgatcac cgcgaagccc cacttggcct cgtccaccgg gctcggccgg
     3241 ttgcgcctga tctcctcggt atgccaggcc tcggcgatca gtcggcgcaa cccgagttgc
     3301 acctcggcac gctctgccgc cgacaggtcg gtgtggtcaa gcgccgcgag gtgcccggcg
     3361 atggcgtcgt acttctggat cagcgtgcgc cgcgccacct cggtggggtg cgcggtgagc
     3421 accagctcga tatccagccg accgatctgg cgggccagtt gctcgcgctt gtggccgcct
     3481 tggaccaggc gctgcaacag ctcggccagc acccggtcat cgaagggttg cgcctcatct
     3541 gggcggcgtc ggcggatgcg gtgatactgc tcggcgatgt tggccagatt gaggaactgg
     3601 ttgaaggcgc gcgccaccgg cagcagctcg tcgtcactga ggccgtcgag ggtttcgcgc
     3661 agttgctgac cgccggcctg cgagccctgg cgcccggcct tggagccctg gcggatgagc
     3721 tcgaccttgt cgagaaactc gtcgccgagc tggttgcgga tggtcttgcc gagtagctcg
     3781 ccgagcaggt gaacctcttc gcgcaggcgc gcatcgatct ccgccatgtc cgtctctccg
     3841 ccgtcaggga agcctcagat tgcacagcgc gacccgttct tacaagcagg cgacgaacgg
     3901 ccgcagtcgc cgaaccggca agctagtctc aacactgcgg gtgctggccg gcccaaccgg
     3961 accgcgccgc ccgccacgat gggtaaccga ggtgtctatg aagattcgcg aactcgtccg
     4021 ccactgggaa cagaactcca gaggccgact gaccc
//
LOCUS       DATIHC010000615         1673 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29625, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000615 DATIHC010000000
VERSION     DATIHC010000615.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1673)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1673)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1673
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29625"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..471
                     /locus_tag="VLF16_10225"
     CDS             <1..471
                     /locus_tag="VLF16_10225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016495397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HSX71298.1"
                     /translation="VLTKPLYDEPFFALLPAGHPWAERDTIDKEMLNDKSLLLLGEGH
                     CFRDQVLEACPSLRKGGEDAAKHTTVESSSLETIRHMVASGLGISILPFSAVDSHHYA
                     PGVIEVRPLTAPAPFRTVAIAWRASFPRPKAIEVLADSIRLCSVARPQGEAIPA"
     gene            468..>1673
                     /locus_tag="VLF16_10230"
     CDS             468..>1673
                     /locus_tag="VLF16_10230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSX71299.1"
                     /translation="MTELAQVPVTALKGVGDALAEKLGKVGLESLQDVLFHLPLRYQD
                     RTRITPIGALRPGQDAVVEGVVAGADVAMGRRRSLLVRLQDGTGTLSLRFFHFSQAQK
                     DGLKRGTALRCYGEVRPGATGLEIYHPEYRAQSGDEPAPVEQTLTPIYPTTEGLTQQR
                     LRQLSQQALARLGPHSLPDWLPAELARDYQLGPLDQAIRYLHRPPPDADVDELAEGRH
                     WAQHRLAFEELLTHQLSLQRLREQVRAQQAPTLPLAKRLPQLFLQNLGFAPTGAQQRV
                     GAEIAYDLSQAEPMLRLVQGDVGAGKTVVAALAALQALEAGYQVALMAPTEILAEQHF
                     LNFSKWLQPLGIEVAWLAGKLKGKARATALEQIAAGAPMVVGTHALFQDEVRFQKLAL
                     VIIDEQHRFG"
BASE COUNT          259 a          629 c          556 g          229 t
ORIGIN      
        1 gtgctgacca agccgctgta cgacgagccc ttcttcgccc tgctgccggc cggccatccc
       61 tgggccgagc gcgacaccat cgacaaggaa atgctcaacg acaagagcct gctgctgctc
      121 ggcgagggtc actgcttccg cgaccaggtg ctcgaagcct gcccgtcgct gcgcaagggt
      181 ggcgaagacg cggccaagca caccacggtg gagtccagct cgctggagac catccgccac
      241 atggtcgcct ccggcctggg catctcgatc ctgccgttct ccgcggtcga cagccaccac
      301 tacgccccgg gcgtgatcga ggtgcgcccg ctcaccgcac cggcgccgtt ccgcaccgtg
      361 gccatcgcct ggcgcgccag cttcccgcgg cccaaggcca tcgaggtgct ggccgactcg
      421 atccgcctgt gctcggtggc gcgcccccaa ggtgaagcca ttccggcatg accgaactgg
      481 cgcaggtacc ggtcaccgcg ctgaagggcg tcggtgatgc gctggccgag aagctgggca
      541 aggtcggact ggagagcctg caggacgtgc tgttccactt gccgctgcgc taccaggacc
      601 gcacccgcat caccccgatc ggtgcgctgc gtccgggcca ggacgcggtg gtcgagggcg
      661 tggtggccgg cgccgacgtc gccatgggcc gccgccgcag cctgctggta cgcctgcagg
      721 acggcaccgg caccctgtcc ctgcgcttct tccacttcag ccaggcgcag aaggacggcc
      781 tcaagcgcgg caccgccctg cgctgctacg gcgaagtgcg ccccggcgcc accggtctgg
      841 agatctacca cccggaatac cgcgcccaga gcggcgacga gccggcgccg gtggaacaga
      901 ccctgacgcc catctacccg accaccgagg gtctgaccca gcagcgcctg cgccagctca
      961 gccagcaggc cctggcccgt ctgggacccc acagcctgcc ggactggcta ccggccgaac
     1021 tggcccgcga ctatcagctg ggcccgctgg accaggcgat ccgctacctg caccggccgc
     1081 cgccggatgc cgacgtggac gagctggccg agggccggca ctgggcccag caccgcctgg
     1141 ccttcgagga actgctgacc caccagctgt cgctgcaacg cctgcgcgag caggtgcgcg
     1201 cccagcaggc gccgacgctg ccgctggcca agcgcttgcc gcagttgttt ctgcagaacc
     1261 tcggcttcgc ccctaccggc gcgcagcagc gggtcggcgc ggagatcgcc tacgacctgt
     1321 cccaggccga gcccatgctg cgcctggtgc agggcgacgt cggcgccggc aagaccgtgg
     1381 tcgcggccct ggccgccctg caagcgctgg aggccggcta ccaggtggcg ctgatggcgc
     1441 cgaccgaaat cctcgccgag cagcacttcc tcaacttcag caagtggctg cagccgctcg
     1501 gcatcgaggt cgcctggctg gccggcaagc tcaagggcaa ggcgcgcgcc acggcgctgg
     1561 aacagattgc cgctggcgca ccgatggtgg tcggcaccca cgcgctgttc caggacgagg
     1621 tgcgcttcca gaaactcgca ctggtgatca tcgacgagca gcaccgcttc ggc
//
LOCUS       DATIHC010000616         4951 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_41625, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000616 DATIHC010000000
VERSION     DATIHC010000616.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4951
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41625"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1561
                     /locus_tag="VLF16_10235"
     CDS             <1..1561
                     /locus_tag="VLF16_10235"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase II"
                     /protein_id="HSX71300.1"
                     /translation="AAAAGRLIIDGIEALRSATWSFPSFSLENVAQTLLGEGKAIDTP
                     YARMDEINRMFAEDKPALARYNLKDCELVTRIFAHTRLIDFLLERAATTGLPADRSGG
                     SVAAFTHLYLPAMHRAGFVAPNLGEKMPQASPGGFVMDSRPGLYESVLVLDYKSLYPS
                     IIRTFLIDPVGLIEGLREPDDEHSVEGFRGARFSRTRHCLPAIVERVWQGREAAKREG
                     NAPLSQALKIIMNAFYGVLGSSGCRFFDTRLASSITLRGHAIMKRTRELIEAEGYRVI
                     YGDTDSTFVWLGHEHAEEDAGRIGRALVAKVNQWWREHLREEMGLESALELQYESHYR
                     RFLMPTVRGAEEGSKKRYAGLVRRADGSEEMVFKGLETVRTDWSPLAQRFQQELYRLI
                     FDRQPFEAYVREYVRRTLAGELDELLIYRKRLRRRLDDYERNVPPHVRAARLADEHND
                     RLGRPRQYQRGAWISYLITTAGPEPLETRRGAIDYDHYVSRQLQPVADAILPFVGSDF
                     ASLIDPQLGLL"
     gene            complement(1565..2941)
                     /gene="gudD"
                     /locus_tag="VLF16_10240"
     CDS             complement(1565..2941)
                     /gene="gudD"
                     /locus_tag="VLF16_10240"
                     /EC_number="4.2.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016489311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008872 - glucarate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0019394 - glucarate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate dehydratase"
                     /protein_id="HSX71301.1"
                     /translation="MTLQTHAPAFDRAASPVLDTPVVTELQVVPVAGHDSMLLNLSGA
                     HGPYFTRNVVILRDSAGNVGVGEVPGGERIRETLEDARQLVVGQPIGHYQRVLNAMRQ
                     TFAARDAGGRGLQTFDLRITIHAVTAMEAALLDLLGQHLGVPVAALLGEGQQRDAVKM
                     LGYLFYIGDRGKTDLPYRAEPEADNDWFRVRHEAAMTPEAVVRLAEAAHARYGFADFK
                     LKGGVLRGEEEIEAVTALAERFPEARITLDPNGAWSLKQAVALCRDQHRVLAYAEDPC
                     GAENGYSGREVMAEFRRATGLRTATNMIATDWREMGHAISLQSVDIPLADPHFWTMAG
                     SVRVAQMCHDWGLTWGSHSNNHFDISLAMFTQVAAAAPGEITAIDTHWIWQDGQRLTK
                     EPLRIENGHVKVPERPGLGVELDLDQLAKAHELYKGMGLGARDDSVAMQFLIPGWRFD
                     NKRPCLVR"
     gene            complement(2960..4207)
                     /locus_tag="VLF16_10245"
     CDS             complement(2960..4207)
                     /locus_tag="VLF16_10245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009049882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSX71302.1"
                     /translation="MFIVNYIDRVNIGFVRPYLESDLGIGAAAYGLGAGLFFIGYALF
                     EVPSNMLLQRVGARVWLTRIMFTWGIVATCMAFVQNETQFYILRFLLGVAEAGFFPGV
                     IYYFTRWLPAAERGKAIAIFLSGSAVASLISGPLAGALMQIQGMNMHGWQWMLFIEGM
                     ASVVLCFFVWFWLDSKPQDAKWLSADEQQALVEAIDHEQREREAAGTIKTSSWALLKD
                     RQIVLFCLIYFCIQLTIYAATFWLPSIIKSMGGLSDMQVGFLNSIPWLISILAMYAFA
                     ACSARWKFQQAWVAAALVVAAVGMFMSTTGGPVFAFVAVCFAAIGFKSASALFWPIPQ
                     GYLDARIAAAVIALINSIGNLGGFVAPTTFGLLEEQTGSIQGGLYGLAVTSVLAAIVV
                     FFVRTKPRSAADAPHATALNQTH"
     gene            complement(4358..>4951)
                     /locus_tag="VLF16_10250"
     CDS             complement(4358..>4951)
                     /locus_tag="VLF16_10250"
                     /EC_number="4.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012699203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-4-deoxyglucarate dehydratase"
                     /protein_id="HSX71303.1"
                     /translation="GILLLPHYLTEACEAGLIAHVEQVCRAVDCSVVVYNRNVCQLSA
                     EGLEILAERCPNLIGFKDGIGDIESMVQIRRRLGERLTYLGGLPTAEVYAAAYKALGV
                     PVYSSAVFNFIPRTAIEFYQAIAADDHATVARLIDDFFLPYLDIRNRCAGYGVSIVKA
                     GARLVGHDAGPVRAPLTELTPDENERLAALIDRLGPQ"
BASE COUNT          787 a         1627 c         1804 g          733 t
ORIGIN      
        1 tgccgccgcg gccgggcggc tgatcatcga cggcatcgag gcgctgcgtt cggccacctg
       61 gagcttcccc tcgttcagcc tggagaacgt ggcgcagacc ctgctcggcg agggcaaggc
      121 gatcgacacg ccctatgcgc gcatggacga gatcaaccgc atgtttgccg aggacaagcc
      181 cgccctggcg cgatacaacc tcaaggactg cgagctggtc acgcgcatct tcgcgcacac
      241 ccggctgatc gacttcctgc tcgagcgcgc cgccaccacc ggcctgccgg cggaccgcag
      301 cggcggctcg gtggcggcct tcacccacct gtacctgccg gcgatgcacc gggccggctt
      361 cgtcgccccc aacctcggcg agaagatgcc ccaggccagc ccgggcggct tcgtcatgga
      421 ctcgcggccg gggctctacg agtcggtgct ggtgctggac tacaagagcc tgtacccgtc
      481 gatcatccgc accttcctga tcgacccggt gggcctgatc gagggcctgc gcgagccgga
      541 tgacgaacac tcggtagagg gctttcgcgg cgcgcgcttc tcgcgcaccc ggcactgcct
      601 gccggccatc gtcgagcggg tctggcaggg ccgcgaggcg gccaagcgcg agggcaacgc
      661 gccgctgtcg caggcgctga agatcatcat gaacgccttc tacggcgtgc tcggctccag
      721 cggctgccgc ttctttgaca cgcgcctggc ctcgtccatc accctgcgcg ggcacgccat
      781 catgaagcgc acccgcgagc tgatcgaggc cgagggctac cgggtgatct acggcgacac
      841 cgactccacc ttcgtctggc tcggccacga gcacgccgag gaggacgccg ggcgcatcgg
      901 ccgcgcgctg gtggcgaagg tcaaccagtg gtggcgcgag cacctgcgcg aggagatggg
      961 cctggagagc gcgctggagc tgcagtacga gagccattac cggcgctttc tgatgcccac
     1021 cgtgcgtggc gccgaggagg gcagcaagaa gcgctacgcc ggcctggtgc ggcgcgccga
     1081 cggcagcgag gagatggtgt tcaagggcct ggagacggtg cgtaccgact ggtcgccgct
     1141 ggcccagcgc ttccagcagg agttgtaccg gctgatcttc gaccgccagc cgttcgaggc
     1201 ctatgtgcgc gagtacgtgc gccgcaccct ggccggcgaa ctggacgagc tgctgatcta
     1261 ccgcaagcgc ctgcgccgcc ggctcgacga ctacgagcgc aacgtgccgc cgcatgtgcg
     1321 cgccgcgcgc ctggccgacg agcacaatga ccgcctgggc cgcccgcggc agtaccagcg
     1381 cggcgcgtgg atcagctacc tgatcaccac cgccggcccc gaaccgctgg agacgcggcg
     1441 cggagccatc gactacgacc actacgtgag ccgccagctg cagccggtgg ccgacgccat
     1501 cctgcccttc gtgggcagcg acttcgccag cctgatcgac ccgcagctgg ggctgctcta
     1561 ggcctcagcg caccaggcag ggacgcttgt tgtcgaagcg ccagccgggg atcaggaact
     1621 gcatcgccac gctgtcgtcg cgggcgccca ggcccatgcc cttgtacagc tcgtgggcct
     1681 tggccaactg gtccaggtcc agctcgacgc ccagccccgg gcgctccggc accttcacgt
     1741 ggccattttc gatgcgcagc ggctccttgg tcaggcgctg gccgtcctgc cagatccagt
     1801 gggtgtcgat ggcggtgatc tcgccggggg cggcggccgc cacctgggtg aacatcgcca
     1861 gcgagatgtc gaagtggttg ttggagtgcg agccccaggt caggccccag tcgtggcaca
     1921 tctgcgccac gcgcaccgag ccggccatgg tccagaagtg cgggtccgcc agcggaatat
     1981 cgaccgactg cagggagatg gcgtggccca tctcgcgcca gtcggtggcg atcatgttgg
     2041 tggcggtgcg caggccggtg gcgcggcgga actcggccat cacctcgcgc ccggaatagc
     2101 cgttctcggc gccgcacggg tcctcggcgt aggccagcac ccggtgctgg tcgcggcaca
     2161 gggccacggc ctgcttcagc gaccaggcgc cgttcgggtc gagggtgatg cgcgcctcgg
     2221 ggaagcgctc ggccagggcg gtgaccgcct cgatctcctc ctcgccgcgc agcacgccgc
     2281 ccttcagctt gaagtcggcg aagccgtagc gggcgtgggc ggcctcggcc aggcgcacca
     2341 ccgcctcggg ggtcatcgcc gcctcgtggc gcacgcggaa ccagtcgttg tcggcctccg
     2401 gctcggcgcg gtagggcagg tcggtcttgc cccggtcgcc gatgtagaac aggtagccga
     2461 gcatcttcac cgcgtcgcgc tgctggcctt cgccgagcag ggcggccacc ggcacgccga
     2521 ggtgctggcc gagcaggtcg agcagtgcgg cctccatggc ggtgacggcg tggatggtga
     2581 tgcgcaggtc gaaggtctgc aggccgcggc cgccggcgtc gcgcgcggcg aaggtctggc
     2641 gcatggcgtt gagcacgcgc tggtagtggc cgatgggctg gccgactacc agctggcggg
     2701 cgtcctcgag ggtctcgcgg atgcgctcgc cgccgggcac ttcgccgacg ccgacattgc
     2761 cggcgctgtc gcgcaggatc accacgttgc gggtgaagta cgggccatgg gcgccgctga
     2821 ggttgagcag catgctgtcg tggccggcca ccggcaccac ctgcagctcg gtgacgacgg
     2881 gcgtatcgag tacgggcgag gcggcgcggt cgaaggcggg agcgtgggtc tggagggtca
     2941 tgatgcgatt ccgtaaggct cagtgggtct ggttcagcgc cgtggcgtgc ggggcgtcgg
     3001 cggcggagcg gggtttggtg cgcacgaaga acaccacgat ggcggccagc accgaggtca
     3061 cggccaggcc gtacaggccg ccctggatcg agccggtctg ttcttccagc aggccgaagg
     3121 tggtgggggc gacgaaaccg ccgaggttgc cgatagagtt gatcagggcg atcaccgccg
     3181 cggcgatgcg ggcgtccagg tagccctggg ggatcggcca gaacagcgcc gaggcggact
     3241 tgaagccgat ggcggcgaag cacacggcga cgaaggcgaa caccgggccg ccggtggtgg
     3301 acatgaacat gccgacggcg gcgaccacca gcgcggcggc cacccaggcc tgctggaact
     3361 tccagcgcgc ggagcaggcg gcgaaggcgt acatggccag gatcgagatc agccagggga
     3421 tggagttgag gaagccgacc tgcatgtcgc tcaggccgcc catgctcttg atgatgctcg
     3481 gcagccagaa ggtggcggcg tagatggtca gctggatgca gaagtagatc aggcagaaca
     3541 gcacgatctg gcggtccttg agcagcgccc aggacgaggt cttgatggtg ccggcggctt
     3601 cgcgctcgcg ctgctcatgg tcgatggcct cgaccagcgc ctgctgctcg tcggccgaca
     3661 gccacttggc gtcctgcggc ttggagtcga gccagaacca gacgaagaag cacagcacca
     3721 ccgacgccat gccctcgatg aacagcatcc actgccagcc gtgcatgttc atgccctgga
     3781 tctgcatcag cgcgccggcc agcggcccgg agatcagcga ggccacggcc gatccgctga
     3841 ggaagatggc gatggccttg ccgcgttcgg cggccggcag ccagcgggtg aagtagtaga
     3901 tcaccccggg gaagaagccc gcctcggcca cgccgagcag aaagcgcagg atgtagaact
     3961 gggtttcgtt ctgcacgaag gccatgcagg tggcgacgat gccccaggtg aacatgatgc
     4021 gggtcagcca gacgcgcgcg cccacccgct gcaggagcat gttggagggc acttcgaaca
     4081 gcgcgtaacc gatgaagaac aggccggcgc cgaggccgta ggcagccgcg ccgatgccca
     4141 ggtcgctctc cagatagggg cggacgaagc cgatgttgac gcggtcgatg tagttgacga
     4201 tgaacatgat gacgaacagc ggcagcacgt ggcgcttgac cttggccacg gcgctggcga
     4261 gcgcctcgtc ggtacggggt agggtgtcgg tcactgtcgg aactcccact aattgttgtt
     4321 gtgcgggttg cgccggcggg ccggcgcggt cgaaggctta ctgcgggccg agtcggtcga
     4381 tcagcgcggc gaggcgctcg ttctcgtccg gggtcagctc ggtgagcggt gcgcgcaccg
     4441 ggccggcgtc gtggccgacc aggcgggcgc cggccttgac gatgctcacg ccgtagccgg
     4501 cgcagcgatt gcggatgtcg agatagggca ggaagaaatc gtcgatcagc cgcgccacgg
     4561 tggcgtggtc gtcggcggcg atggcctggt agaactcgat ggcggtgcgc gggatgaagt
     4621 tgaacaccgc cgaactgtac accggcacgc ccagcgcctt gtaggccgcg gcgtagacct
     4681 cggcggtggg caggccgccg aggtaggtca ggcgctcgcc gaggcggcgg cggatctgca
     4741 ccatcgactc gatgtcgccg atgccgtcct tgaagccgat caggttcggg cagcgctcgg
     4801 cgaggatctc cagaccctcg gcgctcagct ggcagacgtt gcggttgtac accaccacgc
     4861 tgcagtcgac ggcgcggcag acctgctcga catgcgcgat caggccggcc tcgcaggcct
     4921 cggtcaggta atgcggcagc agcaggatgc c
//
LOCUS       DATIHC010000617         2324 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43688, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000617 DATIHC010000000
VERSION     DATIHC010000617.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2324
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43688"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..549
                     /gene="yidC"
                     /locus_tag="VLF16_10255"
     CDS             <1..549
                     /gene="yidC"
                     /locus_tag="VLF16_10255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015479778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0032977 - membrane insertase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HSX71304.1"
                     /translation="VLTIIIKLAFFPLSAASYRSMARMRAVSPKLQALKEQHGDDRQK
                     MSQAMMELYKKEKINPLGGCLPILVQMPVFLALYWVLLESVEMRQAPWLGWITDLSIK
                     DPFFILPIIMGATMFIQQRLNPTPPDPMQAKVMKLMPIIFTFFFLWFPAGLVLYWVVN
                     NVLSIAQQWYITRKIEAATAKA"
     gene            628..1995
                     /gene="mnmE"
                     /locus_tag="VLF16_10260"
     CDS             628..1995
                     /gene="mnmE"
                     /locus_tag="VLF16_10260"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HSX71305.1"
                     /translation="MTTARETIAAVATAQGRGGVGIVRVSGPRARAIGITLAGLEPKP
                     RHAHYGPWHDDDGEVIDQGLLLFFPGPHSFTGEDVLELQGHGGPVVLDMLLQRCLQLG
                     ARQARPGEFSERAFLNDKLDLAQAEAIADLIEASSTQAARNALRSLQGEFSRRVHELT
                     ERLIQLRIYVEAAIDFPEEEIDFLADGHVLSQLDGVRDHLSTVLREAGQGALLRDGMN
                     VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRD
                     TDDHVERIGVERALKAIGEADRVLLVVDSTAPEAADPFALWPEFLDTRPDPARVTLIR
                     NKADLSGEAVLLCTSDDGHVTISLSAKSAEGLDLLREHLKACMGFEQTAESGFSARRR
                     HLEALRQAQTSLEHGRNQLTLMGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSS
                     FCIGK"
BASE COUNT          437 a          764 c          691 g          432 t
ORIGIN      
        1 gtcctgacca tcatcatcaa actggccttc ttcccgctgt ccgccgccag ctatcgctcc
       61 atggcccgca tgcgcgccgt gtcgcccaag ctgcaggcac tgaaggagca gcacggggac
      121 gatcgccaga agatgtccca ggcgatgatg gagctgtaca agaaggagaa gatcaatccg
      181 ctcggcggct gcctgccgat cctggtgcag atgccggtgt tcctggccct ctactgggtg
      241 ctgctggaaa gcgttgagat gcgtcaggcc ccatggctgg gctggatcac cgacctgtcg
      301 atcaaggacc cgttcttcat cctgccgatc atcatgggcg ccaccatgtt tatccagcag
      361 cgcctcaacc cgacgccgcc ggaccccatg caggccaagg tgatgaagct gatgccgatc
      421 atcttcacct tcttcttcct ctggttcccg gccggtctgg tgctgtactg ggtggtcaac
      481 aacgtcttgt ccattgccca gcagtggtac attacgcgca agatcgaggc cgcgacggcg
      541 aaagcctgag tccgctgaag ctgcacaaga cgccccctcg tggggcgttt tgctatccgt
      601 acgatatcca cagtcgagag cccgcccatg accactgccc gcgaaaccat agccgccgtc
      661 gccaccgccc agggccgcgg gggcgtcggc atcgtgcgcg tatccggccc gcgcgctcgc
      721 gcaatcggca tcaccctggc cggcctggaa cccaagccac gccatgccca ttacggcccc
      781 tggcacgacg acgatggtga ggtgatcgac cagggcctgc tgctgttctt ccccggcccc
      841 cattccttca ccggcgagga tgtgctcgaa ctgcaaggcc acggcggccc ggtggtgctc
      901 gacatgctgc tgcagcgttg cctacagctg ggtgcccgcc aggcgcgacc gggcgaattc
      961 agcgaacgcg ccttcctcaa cgacaagctc gacctggctc aggccgaggc catcgccgat
     1021 ctgatcgagg ccagctccac ccaggccgcg cgcaacgcgt tgcgctcact gcagggcgaa
     1081 ttctcgcggc gggtgcatga gctgacggag cggctgatcc agttgcgcat ctacgtcgag
     1141 gcggccatcg acttccccga ggaggagatc gacttcctgg ctgatggcca cgtactcagc
     1201 cagctagacg gtgtgcgcga ccatttatcc acagtgctgc gcgaggcggg ccagggcgct
     1261 ctgctgcgtg atggcatgaa cgtggtgatt gccggtcgcc ccaatgccgg caagtccagc
     1321 ctgctcaacg ccctggcggg gcgcgaggcg gccatcgtca ccgatatcgc cggcaccacc
     1381 cgcgatgtgc tgcgcgaaca tatccacatc gacggcatgc ctctgcatgt ggtggatacc
     1441 gccggcctgc gcgacaccga cgaccatgtc gaacgcatag gcgtggagcg cgcgctcaag
     1501 gccatcggcg aggcggatcg ggtgctgctg gtggtggatt ccaccgcacc ggaggcggcc
     1561 gatccctttg ccctgtggcc ggagttcctc gataccaggc ccgatccggc gcgggtcacc
     1621 ctgatccgca acaaggcgga cctgtctgga gaagccgtgc tgctgtgcac cagcgacgat
     1681 ggccacgtga ccatatcact gtctgccaaa tcggccgaag ggctggatct gctgcgtgag
     1741 catctgaagg cctgcatggg ctttgagcag accgccgaga gcggcttcag cgcccgccgt
     1801 cgtcacctcg aagccctgcg ccaggcccag accagcctcg agcacggccg caatcagctg
     1861 accctgatgg gcgccggtga gctgctggcc gaggacctgc gtcaggccca gcaggccttg
     1921 ggcgaaatca ccggagcctt cagctcggac gacctgctcg ggcgcatctt ctccagcttc
     1981 tgcatcggca aataagcgtc ttgaaccctg tggaaaacca cgcctgagcc cggtcgataa
     2041 gcctggtgac aattgggtgg aaaacctgcc tgtgcataaa acgccttttc atccacaggc
     2101 gttatccagc ttgcccaacg gataaggtca ggaacggcac agccttatac atcgctgtag
     2161 gccatggtag atggacgctg tagcgatcta tccacagaaa agcgttccac catacataaa
     2221 cacaaaaact aggctttata agatttctct cttttattct ctatttctct gaaagatcga
     2281 cctggctatt ttttgtgcag aaggcttcat tcgggcaggt caac
//
LOCUS       DATIHC010000618         2459 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_15011, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000618 DATIHC010000000
VERSION     DATIHC010000618.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2459)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2459)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2459
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15011"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1478)
                     /gene="rpsA"
                     /locus_tag="VLF16_10265"
     CDS             complement(<1..1478)
                     /gene="rpsA"
                     /locus_tag="VLF16_10265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HSX71306.1"
                     /translation="MSESFAELFEESLKSLDMQPGAIITGIVVDIDGDWVTVHAGLKS
                     EGVIPLDQFFNEQGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAESWLVLEAAF
                     NAEEVVKGVINGKVKGGFTVDVNGIRAFLPGSLVDVRPVRDTTHLEGKELEFKVIKLD
                     QKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLL
                     HITDMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPE
                     GTRVTAKVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLD
                     IDEERRRISLGIKQCKSNPWEDFSGQFNKGDRISGTIKSITDFGIFIGLDGGIDGLVH
                     LSDISWNEVGEEAVRRFKKGDELETVILSVDPERERISLGIKQLEDDPFSNYASLNEK
                     GTIVRGTVKEVDAKGAIIDLGNDIEATLKASEISRDRVEDAR"
     gene            complement(1629..2294)
                     /gene="cmk"
                     /locus_tag="VLF16_10270"
     CDS             complement(1629..2294)
                     /gene="cmk"
                     /locus_tag="VLF16_10270"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017677359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004127 - cytidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HSX71307.1"
                     /translation="MSAVVITIDGPSGSGKGTIAGLLANKLGWNLLDSGALYRLLAFA
                     AGNHGIDLTNEEALKTLAAHLDVQFVDKRIILEGEEVTDAIRNEQVGAGASMVASLPA
                     VREALLQRQRAFLEAPGLVADGRDMGTVVFPDAPLKIYLTASAEERARRRYLQLKGKV
                     EGVSLPSLLDEIRARDERDMQRAVAPLKPAVDAIQLDSTELSIEQVLDRILSEVANRD
                     LAG"
     gene            complement(2291..>2459)
                     /locus_tag="VLF16_10275"
     CDS             complement(2291..>2459)
                     /locus_tag="VLF16_10275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71308.1"
                     /translation="VWSHGDHRIAMSFSVASLRATAPIRIHDCANVATSFPNFLGLAA
                     QTGIRVTEEGK"
BASE COUNT          439 a          754 c          748 g          518 t
ORIGIN      
        1 ttgcgggcgt cttcaacgcg gtcgcggctg atttcggaag ccttcagagt ggcctcgatg
       61 tcgttgccca gatcgatgat ggcgcccttg gcgtccactt ccttgacggt accgcgcacg
      121 atggtgcctt tctcgttcag ggaggcgtag ttggagaacg gatcgtcttc cagctgcttg
      181 atgcccaggg agatgcgctc gcgctccgga tcaacggaga ggatgacggt ttccagctcg
      241 tcgcccttct tgaaacgacg tacggcttct tcgcccactt cgttccagga gatgtcggac
      301 aggtgaacca ggccgtcgat gccgccgtcc aggccgatga agataccgaa atcggtgatc
      361 gacttgatgg tgccggagat gcggtcgccc ttgttgaact ggccagagaa gtcttcccac
      421 gggttggact tgcactgctt gatgcccagg gagatacgac gacgctcttc gtcgatgtcc
      481 agaaccatga cttccacttc gtcgccgacc tgaacgacct tggacgggtg gatgttcttg
      541 ttggtccaat ccatctcgga cacgtgcacc aggccttcca cgccctcttc cagctcggcg
      601 aagcagccgt agtcggtcag gttggtgact ttggcggtga cgcgggtgcc ttccggataa
      661 cgggccttga tggcgaccca cggatcttcg cccagctgct tcagacccag ggagacgcgg
      721 ttgcgttcgc ggtcgtactt caggaccttg acgtcgatct cgtcgccaac gttgacgatc
      781 tcggacggat gcttgatgcg cttccaggcc atgtcggtga tgtgcagcag accatctacg
      841 ccgcccaggt caacgaacgc accgtagtcg gtgaggttct tgacgatacc tttgacctgc
      901 tggccttcct gcagggattc cagcagagct tcgcgctcgg cgctgttctc ggcttccagc
      961 acgctgcgac gggaaacgac aacgttgttg cgcttctggt ccagcttgat gaccttgaac
     1021 tccagctctt tgccttccag gtgggtggta tcacgcaccg gacggacgtc gaccagggag
     1081 cccggcagga acgcgcggat gccgttgacg tcaacggtga agccgccttt gaccttgccg
     1141 ttgataacgc ccttgaccac ttcctcagcg ttgaacgcag cttccagaac cagccaggac
     1201 tcggcgcgct tggctttctc gcgggacagc ttggtttcac cgaagccgtc ttccacagcg
     1261 tccagcgcaa cgtggacttc gtcaccgacc ttgatggtca gctcgccttg ttcgttgaag
     1321 aactggtcga gcgggatgac gccctcggac ttcaggccgg catgtacggt gacccagtca
     1381 ccgtcgatgt cgaccacgat gccggtgatg attgcacccg gctgcatgtc gagggatttc
     1441 aggctttctt caaaaagttc tgcaaagctt tcgctcatgt tgattcctgt tgatcaaggg
     1501 cggggattcg cccaaaccac actccagaca atgtgggttc gttcatgtaa aaagaggcct
     1561 gcgggactat gactggtctc ccgcatgcct ccttgcgagc ctttcgactt aagtcagccg
     1621 cggctcattt acccggcgag atcgcgattg gcgacctcac tgagaattct gtccagcacc
     1681 tgctcgatgc tcagctcggt ggaatccagc tggatggcgt ctaccgccgg cttcagcgga
     1741 gccaccgctc gctgcatgtc gcgctcgtcg cgagcacgaa tctcgtctag cagactcggc
     1801 aggctaacac cttcgacttt tcctttcaac tgcaggtagc gacggcgagc gcgctcctcg
     1861 gcgctggcgg tcaggtagat cttcagcggc gcatccggaa acaccacggt acccatgtcg
     1921 cggccgtcgg ccaccaggcc cggcgcctcg aggaaggcgc gctgacgctg cagcagcgcc
     1981 tcgcgcacgg cgggcaggga agcgaccatg gaagcaccgg caccgacctg ctcgttgcgg
     2041 atggcgtcgg tgacctcctc gccctcgaga atgatgcgct tgtcgacgaa ctgcacgtcc
     2101 aggtgagcag ccagcgtctt cagcgcctct tcgttggtca ggtcgatacc atgattgccg
     2161 gcggcgaagg ccagcaggcg ataaagagcc ccggaatcca gcagattcca gcccagcttg
     2221 ttggccagca gaccggcgat ggtgcccttg cccgagccgc tcggcccgtc gatggtgatg
     2281 actacggcgc tcatttgccc tcctccgtta cgcgaatacc ggtttgagcg gccagcccga
     2341 ggaaattggg gaaggacgtg gcgacgttgg cgcaatcatg gatgcgaatc ggcgccgtgg
     2401 cgcgcaggga ggcaacgctg aaggacatgg cgatgcggtg gtcgccgtga ctccacacc
//
LOCUS       DATIHC010000619         2424 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_45138, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000619 DATIHC010000000
VERSION     DATIHC010000619.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2424)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2424)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2424
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45138"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2424)
                     /gene="putA"
                     /locus_tag="VLF16_10280"
     CDS             complement(<1..>2424)
                     /gene="putA"
                     /locus_tag="VLF16_10280"
                     /EC_number="1.2.1.88"
                     /EC_number="1.5.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012017789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0003842 - 1-pyrroline-5-carboxylate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0004657 - proline dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0010133 - proline catabolic process to
                     glutamate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional proline dehydrogenase/L-glutamate
                     gamma-semialdehyde dehydrogenase PutA"
                     /protein_id="HSX71309.1"
                     /translation="LCFAPELAGWNGIGFVIQAYQKRCPYVIDYVIDLAKRSRHRLMI
                     RLVKGAYWDSEIKRAQVDGLEGYPVYTRKPYTDVSYIACARKLLAVPEAIYPQFATHN
                     AHSLSAIYQIAGQNYYPGQYEFQCLHGMGEPLYEQVVGSIKDGKYNRPCRIYAPVGSH
                     ETLLAYLVRRLLENGANTSFVNRIADHSISLKELVLDPVEQVERMASQEGTLGLPHPR
                     IPLPRDLYGEARLNSEGIDLANEHRLGSLSSALLSSTNTAYVAAPILGCDAPNPGPAE
                     PVRNPADHRDLVGHVHEASEADVKSAILCAQSSGQIWQSTLPAERAAVLERAADQMEG
                     ETQQLMGLLVRESGKTFANAIAEVREAVDFLRYYAAQARTFSNDSYRPLGPVVCISPW
                     NFPLAIFTGQVCAALAAGNTVLAKPAEQTPLIAAQAVRILLEAGVPGGAVQLLPGRGE
                     TVGARLVGDERVRGVMFTGSTEVAGILARNIAGRLDAQGRTIPLIAETGGLNAMIVDS
                     SALAEQVVVDVVSSAFDSAGQRCSALRVLCVQDDVADRVIEMLKGAMAEYRIGSPERL
                     CTDIGPVIDAEAKAGIEAHIAAMREKGRKVFQAARADAEEFKRGTFVLPTLIELDSFD
                     EMKREIFGPVLHLVRYPRAELGGLLQQINDSGYGLTLGVHTRIDETIAQVVDSARVGN
                     LYVNRNIVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLSTRPQDAVAQQLKGDNVHA
                     LGAPAELDKARNAFADWAAKQEPAQAELFTRYRELSQSFTSHVLAGPTGERNTYSLLP
                     RERVLCLAEE"
BASE COUNT          346 a          797 c          894 g          387 t
ORIGIN      
        1 ctcctcggcc aggcacagca cgcgctcgcg cggcagcagg ctgtaggtat tgcgttcgcc
       61 ggtcggcccc gccagcacat ggctggtgaa gctctgcgac aactcgcggt agcgggtgaa
      121 cagctcggcc tgcgccggct cctgcttggc agcccagtcg gcgaaggcgt tgcgcgcctt
      181 gtccagctcg gccggcgcac ccagggcgtg cacgttgtcg cccttgagct gctgggccac
      241 cgcgtcctgc gggcgggtcg acagcaggcg atacaggtat agcgggccgc cggccttggg
      301 accggtgccg gacaggccct cgccgccgaa cggctgtacg ccgaccacgg cgccaacgat
      361 gttgcggttg acgtagaggt tgccgacgcg agccgagtcg accacctggg cgatggtctc
      421 gtcgatgcgg gtatgcacgc cgagggtcag gccgtagccg ctgtcgttga tctgctgcag
      481 caggccgccc agctcggcgc gcgggtagcg caccaggtgc agcacggggc cgaagatctc
      541 gcgcttcatc tcgtcgaagc tgtccagctc gatcagggtc ggcagcacga aggtgccgcg
      601 cttgaactcc tcggcatcgg cgcgggcggc ctggaacacc ttgcggccct tctcgcgcat
      661 ggcggcgatg tgcgcctcga tgccggcctt ggcctcggcg tcgatcaccg ggccgatgtc
      721 ggtgcacagg cgctccggcg atccgatgcg gtactcggcc atggcgccct tgagcatctc
      781 gatcacgcgg tcggccacgt cgtcctgtac gcagagtacg cgcagggccg agcagcgctg
      841 gccggcgctg tcgaaggcgg agctgaccac gtcgaccacc acctgctcgg ccagggccga
      901 ggagtcgacg atcatggcgt tgaggccgcc ggtctcggcg atcagcggga tggtacggcc
      961 ctgggcgtcc aggcggccgg cgatgttgcg cgcgaggatg ccggcgactt cggtggagcc
     1021 ggtgaacatc acgccgcgca cgcgctcgtc gcccaccagg cgggcaccga cggtctcgcc
     1081 gcggcccggc agcagctgca cggcaccgcc gggcacgccg gcctccagca ggatgcgcac
     1141 ggcctgggcg gcgatcagtg gcgtctgctc ggccggcttg gccagcacag tattgccggc
     1201 ggccagcgcc gcgcagacct ggccggtgaa gatcgccaga gggaagttcc acgggctgat
     1261 gcacaccacc ggacccagcg gacggtagct gtcgttgctg aaggtgcggg cctgcgccgc
     1321 gtagtagcgc aggaagtcca ccgcctcgcg cacttcggcg atggcgttgg cgaaggtctt
     1381 gccggactcg cgcaccagca ggcccatcag ttgctgggtc tcgccttcca tctggtcggc
     1441 ggcgcgctcc agcacggcgg cgcgctcggc cggcagggtc gactgccaga tctgtccgct
     1501 ggactgggcg cagaggatgg cgctcttgac gtcggcctcg ctggcctcgt gcacatggcc
     1561 gaccaggtcg cggtggtcgg ccgggttgcg caccggctcg gccgggccgg ggttcggcgc
     1621 gtcgcagccg agaatcggcg cggccacgta ggcggtgttg gtggacgaca gcagcgccga
     1681 ggacagcgag cccagacggt gctcgttggc gaggtcgatg ccctcggagt tcaggcgtgc
     1741 ctcgccgtac aggtcacgcg gcaggggaat gcgcgggtgc ggcaggccca gggtgccttc
     1801 ctgcgaggcc atgcgctcga cctgctcgac cgggtccagc accagctcct tgagcgagat
     1861 gctgtggtcg gcgatgcggt tgacgaagct ggtgttggcg ccgttctcca gcaggcgacg
     1921 gaccaggtag gccagcagcg tctcgtggct gccgaccggg gcgtagatgc ggcacgggcg
     1981 gttgtacttg ccgtccttga tcgaacccac cacctgctcg tacagcggct cgcccatgcc
     2041 gtgcaggcac tggaactcgt actggcccgg gtagtagttc tgcccggcga tctggtagat
     2101 ggccgacagc gagtgggcgt tgtgggtggc gaactgcggg tagatggcct ccggcacggc
     2161 cagcagcttg cgcgcgcagg cgatgtagga aacgtcggtg tacggcttgc gggtgtacac
     2221 cggatagcct tccaaaccat cgacctgggc gcgcttgatc tcgctgtccc agtaggcgcc
     2281 cttcaccagg cggatcatca ggcggtggcg gctgcgcttg gccaggtcga tgacgtagtc
     2341 gatcacgtac gggcagcgct tctggtaggc ctggatgacg aagccgatgc cgttccagcc
     2401 ggccagttcc ggggcgaagc acag
//
LOCUS       DATIHC010000620         2604 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29641, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000620 DATIHC010000000
VERSION     DATIHC010000620.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2604
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29641"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..585)
                     /locus_tag="VLF16_10285"
     CDS             complement(<1..585)
                     /locus_tag="VLF16_10285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase family protein"
                     /protein_id="HSX71310.1"
                     /translation="MSKPTVEKAANFLRPIVQADLDSGKHAKIITRFPPEPNGYLHIG
                     HAKSICLNFGLAQEFGGECNLRFDDTNPAKEDQEYIDAIKADVQWLGFQWAGEERYAS
                     NYFDQLHAWAVALIEAGKAFVCDLNAEEMRAYRGSLTEPGKNSPFRERSVEENLDLFA
                     RMKAGEFPDGARSLRAKIDMASPNINMRDPVLYRI"
     gene            778..1272
                     /locus_tag="VLF16_10290"
     CDS             778..1272
                     /locus_tag="VLF16_10290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019339172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HSX71311.1"
                     /translation="MIKLHTNHGVITLELFADKAPETVANFEQYVREGHYNGTVFHRV
                     IGNFMIQGGGFEPGMKQKSTRAPIKNEANNGVSNKVGTVAMARTMDPHSASAQFFINV
                     ADNTFLDHSAPTMQGWGYAVFGQVTEGMDVVEKIKGVDTTMKSGHQDVPVEDVIIEKA
                     EVVE"
     gene            1277..1999
                     /gene="lpxH"
                     /locus_tag="VLF16_10295"
     CDS             1277..1999
                     /gene="lpxH"
                     /locus_tag="VLF16_10295"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017360731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008758 - UDP-2,3-diacylglucosamine
                     hydrolase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HSX71312.1"
                     /translation="MILLISDLHLEEERPDITRAFLHFLQTRARGAGALYILGDFFEA
                     WIGDDGMSPFQQSIARALRELSDAGTRIFLMHGNRDFLIGRSFCRLAGCTLLKDPSIV
                     QFNGEPVLLMHGDSLCTLDVGYMKLRRLLRNPLSLFILRHLPLSTRHKLARKLRSESR
                     AQTSMKAREIIDVTPDEVPRIMAEHGVRTLIHGHTHRPAVHALELNGQPARRIVLGDW
                     DKQGWALQVDEQGFHQAPFPLA"
     gene            2106..>2604
                     /locus_tag="VLF16_10300"
     CDS             2106..>2604
                     /locus_tag="VLF16_10300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008099284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protease subunit, stomatin/prohibitin"
                     /protein_id="HSX71313.1"
                     /translation="MDIPNGTASKLSLIKYVAVPLVVAAACLVGFNGIFFYNEAGYAT
                     HVRTLFGEEKIVDDVGYATKWFGRATPWKKALSVQSVLGEDHEVDTSFDNDSLGATIE
                     AFPIVFLGNVDAKVESSARFRLPSGDQFLKIAQEYRNPDNFIKTALVPAIKETLQATA
                     SLMSAD"
BASE COUNT          466 a          899 c          801 g          438 t
ORIGIN      
        1 gatccgatag agcaccgggt cgcgcatgtt gatgttcggc gaggccatgt cgatcttggc
       61 gcgcagcgag cgggcgccgt ccgggaactc gccggccttc atgcgggcga acaggtccag
      121 gttctcttcc accgagcgct cgcggaacgg gctgttcttg cccggctcgg tgaggctgcc
      181 gcggtaggcg cgcatttcct cggcgttgag gtcgcagacg aaggccttgc cggcctcgat
      241 cagcgccacc gcccaggcgt gcagctggtc gaagtagttg gaggcgtagc gctcctcgcc
      301 cgcccactgg aagcccagcc actgcacatc ggccttgatc gcgtcgatgt attcctggtc
      361 ttccttggcc gggttggtgt cgtcgaaacg caggttgcac tcgccgccga actcctgggc
      421 caggccgaag ttcaggcaga tgctcttggc gtggccgatg tgcaggtagc cattgggttc
      481 cggcgggaag cgggtgatga tcttggcgtg cttgccgctg tccagatcgg cctgaacgat
      541 ggggcgcagg aaattggcgg ctttttcgac ggtgggcttg ctcatgatgt ccttagcttc
      601 gaggtgcgcg gcccgcggcc cgtggcggtt cgccccaggg taggccggtc aagacaaagg
      661 ccgtatgata cccaacccgt caaccccctg acagccgcaa agcgaccagg cgtggccccc
      721 agcgcaaatg cgccgcccgc cctgcccgcc ttgcccgaat tcgagagcgc atccgccatg
      781 atcaagctgc acaccaacca cggcgtcatc accctggaac tgttcgccga caaggccccg
      841 gaaaccgtcg ccaacttcga gcagtacgtg cgcgaaggcc actacaacgg caccgtgttc
      901 caccgcgtga tcggcaactt catgatccag ggcggcggtt tcgagccggg catgaagcag
      961 aagtccaccc gcgccccgat caagaacgag gccaacaacg gcgtttccaa caaggtcggc
     1021 accgtcgcca tggcccgcac catggacccg cactcggctt ccgcgcagtt cttcatcaac
     1081 gtcgccgaca acaccttcct cgaccacagc gcaccgacca tgcagggctg gggctacgcc
     1141 gtattcggcc aggtgaccga gggcatggac gtggtcgaga agatcaaggg cgtggacacc
     1201 accatgaagt ccggccatca ggacgtaccg gtggaagacg tgatcatcga gaaggccgaa
     1261 gtcgtcgagt gattcgatga tcctgctgat ctccgatctg cacctggaag aggaacgccc
     1321 ggacatcacc cgggcgtttc tgcatttcct gcagacccgc gcccgcgggg ccggggcgct
     1381 gtacatcctc ggcgacttct tcgaggcctg gatcggcgat gacggcatgt cgcccttcca
     1441 gcagagcatc gcccgcgccc tgcgcgagct gagcgatgcc ggcacgcgca tcttcctgat
     1501 gcacggcaac cgcgatttcc ttatcggcag aagcttctgt cgtctggccg gttgcaccct
     1561 gctgaaggac cccagcatcg tgcagttcaa cggcgagccg gtgctgctga tgcacggcga
     1621 cagcctgtgc accctggatg tgggctacat gaagttgcgc cgcctgctgc gcaacccgct
     1681 cagcctgttc atcctgcgcc acctgccgct gtccacccgc cataagctgg cgcgcaagct
     1741 gcgcagcgag agccgcgcgc agaccagcat gaaggcccgc gagatcatcg acgtgacccc
     1801 ggacgaggtg ccgcggatca tggccgaaca cggcgtgcgc acgctgatcc acggccacac
     1861 ccaccgcccc gctgtgcacg cactcgagtt gaacggccag ccggccagac gcatcgtcct
     1921 cggcgactgg gacaagcagg gctgggccct gcaggtggac gagcagggct tccaccaggc
     1981 gccgtttccg ctggcctgag gccgccgcga gaggcgctgc acataccggc acagtgccac
     2041 ttgacgctcc cttggcggct ccccagcatt cgcgctcctt tctcgcagtc aaggaccggt
     2101 agttcatgga catccccaac ggaacggctt ccaaactctc cctgatcaag tacgtcgcgg
     2161 tgccgctggt ggtcgccgcc gcctgcttgg tcggcttcaa cggcatcttc ttctacaacg
     2221 aggccggtta cgccacccac gtgcgcaccc tcttcggcga ggagaagatc gtcgacgacg
     2281 tcggctacgc caccaagtgg ttcggccgcg ccaccccctg gaagaaggca ctcagcgtgc
     2341 agtcggtgct cggcgaggac cacgaggtcg acaccagctt cgacaacgac agcctgggcg
     2401 ccaccatcga ggccttcccc atcgtcttcc tcggcaacgt ggacgccaag gtcgagtcct
     2461 cggcgcgctt ccgcctgccc tccggcgacc agttcctgaa gatcgcccag gaataccgca
     2521 acccggacaa cttcatcaaa accgcgctgg tgccggccat caaggaaacc ctgcaggcca
     2581 ccgcctcgct gatgagcgcc gacg
//
LOCUS       DATIHC010000621         2022 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34362, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000621 DATIHC010000000
VERSION     DATIHC010000621.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2022
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34362"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..276
                     /locus_tag="VLF16_10305"
     CDS             <1..276
                     /locus_tag="VLF16_10305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HSX71314.1"
                     /translation="DIGLDDTAAACGVDRFRLSRAFKSAFGIAPHAYLIQLRLAKARQ
                     RLARGDTPADVASALGFADQSHLGRWFRRAYRLTPADYRRRCSKLPD"
     gene            369..962
                     /locus_tag="VLF16_10310"
     CDS             369..962
                     /locus_tag="VLF16_10310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007905732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HSX71315.1"
                     /translation="MQSLLPFLLFAFVASITPGPTNILALSHGARFGVRATLPLVLGA
                     CLAAALIVLLVGLGLGEALLRYPRVQLAMSWAGALWLSWLAWQLLRSAAAPLNTTDAR
                     ELGPLGAAALQLVNPKVWMMAVAVVSVFAAGSEDKAMRVLQLSLIFLLLAVPSMTAWA
                     LLGAGSARLLQSPKRMQRFNQLLALLLFVSTWLAVLL"
     gene            complement(1126..1659)
                     /locus_tag="VLF16_10315"
     CDS             complement(1126..1659)
                     /locus_tag="VLF16_10315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009044782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3087 domain-containing protein"
                     /protein_id="HSX71316.1"
                     /translation="MFEIQPMSPELYRQQTRRSTFVVIAIFLVLGMLCATASTQLFGG
                     APGDNFTWNLLGVLTGLALTVVLVRQQLWHRPFMAAAAYGWGLKRNLMRITNVMHHVK
                     AGVAAGDASAMKLLRFYHLGVSQMHQLDGNSSELSQMVREIDAHREAMQQQGLDPQQN
                     RLDPAWIDAVKRIPATR"
     gene            complement(1761..1988)
                     /locus_tag="VLF16_10320"
     CDS             complement(1761..1988)
                     /locus_tag="VLF16_10320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003174539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3079 domain-containing protein"
                     /protein_id="HSX71317.1"
                     /translation="MAKKFPLNPSHPERICWGCDLYCPATSLACGNGADRTMHPVETF
                     GEDWYQFGDLGFTPEDGAKHVELIPVVFVGE"
BASE COUNT          281 a          682 c          716 g          343 t
ORIGIN      
        1 gacatcggcc tggacgacac ggcggcggcc tgcggcgtgg atcgcttccg cctcagccgc
       61 gccttcaaga gcgccttcgg catcgcaccg cacgcctacc tgatccagct gcgcctggcc
      121 aaggcacgcc agcgcctggc ccgtggcgac acgccggccg atgtggccag cgctttgggc
      181 ttcgccgacc agagccacct gggccgctgg ttccgccgcg cctatcggct cactcccgcc
      241 gactaccgtc gccgctgctc aaagcttcca gactgatcgg ccgccacgcc gcagcatggg
      301 cctccctgat acggagaaac catgccatgc gtacccacca ttctcgtcac gcgcggaggg
      361 gctgagtcat gcagtccctg ctgcccttcc tgctgttcgc cttcgtcgcc agcatcacgc
      421 cggggccgac caatatcctg gcgctcagcc acggcgcgcg cttcggcgtg cgcgccaccc
      481 tgccgctggt gctcggcgcc tgcctggcgg cggcgctgat cgtgttgctg gtgggcctgg
      541 gcctgggcga ggcgttgctg cgctacccac gcgtgcagct ggcgatgagc tgggccggcg
      601 cgctgtggct gagctggctg gcctggcagc tgctgcgcag cgcggccgcg ccgctgaaca
      661 ccacggatgc gcgcgaactc ggcccgctgg gtgcggcggc gctgcagctg gtgaacccca
      721 aggtgtggat gatggcggtc gcggtggtca gcgtgttcgc cgccggcagc gaggacaagg
      781 ccatgcgcgt gctgcagttg tcgctgatct tcctgctgct ggccgtgccg agcatgaccg
      841 cctgggccct gctcggcgcc ggcagcgcgc gcctgttgca gtcgccgaag cgcatgcagc
      901 gcttcaacca gttgctggcg ctgctgctgt tcgtttcgac ctggctggcg gtgttgcttt
      961 agatgagctg accgggatgc gccccactga ccgggcgacg aggttgcttc gaggaaagga
     1021 tgccggggcg aaagccgcct ggtgcgcgcg gcgcacccta cgagctgcaa acaggaccag
     1081 gcggtgcccg gcgtagggtg cgccgtgcgc accgagcggt ggcggtcagc gcgtcgcggg
     1141 gatgcgtttc accgcgtcga tccaggccgg gtcgaggcgg ttctgctgcg ggtccaagcc
     1201 ctgctgctgc atggcttcgc ggtgcgcgtc gatctcgcgg accatctggc tcagctcgct
     1261 gctgttgcca tccagctggt gcatctggct cacgcccagg tgatagaagc gcagcagctt
     1321 catggcgctg gcatcgcccg ccgccacgcc ggccttcacg tggtgcatga cgttggtgat
     1381 gcgcatcagg ttgcgcttga ggccccagcc gtaggccgcg gccgccatga acggacggtg
     1441 ccacagctgc tggcgcacca ggaccacggt cagcgccagg ccggtgagca cgccgagcag
     1501 gttccaggtg aagttgtcgc cgggcgcgcc gccgaacagc tgggtgctgg cggtggcgca
     1561 gagcatgccc agcaccagga agatggcgat gaccacgaag gtgctgcggc gggtctgctg
     1621 gcggtagagc tcggggctca tgggctggat ttcgaacatg actgatccgg gggtgatgcg
     1681 ggaccgccac cttgcctgat cgaacccgag gggtcgagcc cggagtatga cgcgtcttga
     1741 tctgcatcag ccgcgcgcgg ctattcgccg acgaacacca ccggaatcag ctcgacatgc
     1801 ttggctccgt cctcgggcgt gaagcccagg tcgccgaatt ggtaccagtc ctcgccgaag
     1861 gtctcgaccg ggtgcatggt gcggtcggcg ccgttgccgc aggccagcga ggtggccggg
     1921 caatacagat cgcaccccca gcagatgcgc tcgggatgcg acgggttgag cggaaatttc
     1981 ttggccatgg gcgcgcctcg tgccgactgc tgcgataccc gc
//
LOCUS       DATIHC010000622         1811 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21793, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000622 DATIHC010000000
VERSION     DATIHC010000622.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1811
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21793"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..482
                     /locus_tag="VLF16_10325"
     CDS             <1..482
                     /locus_tag="VLF16_10325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71318.1"
                     /translation="LGRALVRIAAKAAASVFCALTLLTGCASETRLPPAEHRLGIHPA
                     RTAALDGLQAMTDRHSGVRLWVTPQPVLTEADVRQAEMAFTPAGEPAVVLTLSEEGRA
                     TLAELTRGSLGQPLAFVVDGELRLAPLIEEPVLDGRVALTGFDSLQEAEALVRDWRR"
     gene            894..>1811
                     /locus_tag="VLF16_10330"
     CDS             894..>1811
                     /locus_tag="VLF16_10330"
                     /inference="COORDINATES: protein motif:HMM:TIGR04214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CSLREA domain-containing protein"
                     /protein_id="HSX71319.1"
                     /translation="MSRTADRFDPACVSDCSLREAIYRANRTPGSTRIMLRAGTYTLT
                     LSDPIWNQETDPDPDENECWRGDLDVRGELTIIGAGQAETIIRSTGEPLTGDRLIEVV
                     EGASLSLRRLTLRDGLSDTQGGALRNHGRARVQQVSFIDNRSSAGIEGQGGAIANYGR
                     LTISQALFERNQSIGEEGFFGLGGAIFNQGIVQVRDTTFRDNIATDYNDTDLAQGGAL
                     YNEGHADVARSTFVGNAAGLSLDNGGGAAIANRLSGVLILTNSTLSGNIGTDTNGVLA
                     NGISGYPEDAQAQARLVNVTLAGNEGLALS"
BASE COUNT          286 a          623 c          602 g          300 t
ORIGIN      
        1 gccttggccg cgcgctcgta cgcatcgcgg ccaaggccgc tgcctcagtg ttctgcgccc
       61 tgacgctgct gaccggctgc gccagcgaga cgcgtctgcc gcccgccgaa caccggctgg
      121 gcatccatcc ggcccgcacc gccgccctcg acgggctgca ggcgatgacc gaccggcaca
      181 gcggcgtgcg cctgtgggtg acgccgcagc ccgtgctgac cgaggcggac gtgcgacagg
      241 cggagatggc cttcacaccc gcaggtgagc cggccgtggt gctgacgctg agcgaagaag
      301 gtcgcgccac cctggccgag ctgacccgcg gcagcctcgg ccagccgctg gccttcgtgg
      361 tcgacggcga actgcgcctg gccccgctca tcgaggagcc ggtgctcgat ggccgcgtcg
      421 ccctgaccgg cttcgactcg ctgcaggaag ccgaagcgct ggtgcgcgac tggcgtcggt
      481 gagtcgacag aagggtcggt gagcgtttca ccggcccggt ggcggcttca cgcaagcatt
      541 ccgtgctcaa tgcgacctgt acggtttcgg ccagcctgcc cgcggtcgta caacccagcg
      601 aagcgggtgg gggcgcggcg agtgttcggg tggcagtcac ccttttcgat gagcggtgct
      661 tctcgtgctt accactggtc agccggccgc ctgcagtgcg tggcgggtga tctaacctgc
      721 gttcgcgggc ctgccggggc ctgcctctcg cccagtcgtt accggcactg agttgtctcc
      781 cacaaggctc catgtctcag aggcggtttc gtatgttcgc gtccagattc gcgggtgccg
      841 cgcttctcct tgctctgtgt tcgccatggg tcatggcaga gaacgtcatc tccgtgagcc
      901 gaacggcgga tcgcttcgat cccgcctgtg tcagcgactg ctcgctgcgc gaggccatct
      961 atcgcgccaa ccgtacgccc gggtccacgc gcatcatgct gcgtgccgga acctacaccc
     1021 tgaccctgag cgacccgatc tggaatcagg aaaccgaccc cgatcccgat gagaacgagt
     1081 gctggcgcgg tgacctggat gtccgcggtg agctgacgat catcggcgcc ggccaggccg
     1141 aaaccatcat ccgcagcacc ggcgagccgc tcaccggaga caggctgatc gaggtggtcg
     1201 agggtgcctc gttgagcctg cgccggctta cgctgcgcga cggcctttcc gatacccagg
     1261 gtggtgccct gcgcaaccat ggccgggcgc gggtgcagca ggtcagtttt atcgacaacc
     1321 gctccagcgc cggcatcgag ggccagggcg gggcgattgc caattacggc cgcctcacca
     1381 tcagccaggc cttgttcgag cgcaatcagt ccatcggcga agagggcttc ttcggcctgg
     1441 gcggggcgat cttcaatcag gggattgtgc aggtccgcga caccaccttt cgcgacaata
     1501 tcgccaccga ctacaacgac accgatctcg cccagggcgg ggcgctgtac aacgaaggcc
     1561 acgcggatgt cgcacggagc accttcgtgg gcaatgcagc gggcctttcg ctcgataacg
     1621 gtggcggcgc agccatcgcc aaccgcctga gcggcgtgtt gatcctgacc aacagcaccc
     1681 tgagcggcaa catcggtacc gacaccaacg gcgtgctggc taacggcatc agcggctatc
     1741 ccgaggatgc ccaggcccag gcgcggctgg tcaacgtcac cctcgccggc aacgaaggcc
     1801 tggccctgag c
//
LOCUS       DATIHC010000623         2010 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_6506, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000623 DATIHC010000000
VERSION     DATIHC010000623.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2010
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6506"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..270
                     /locus_tag="VLF16_10335"
     CDS             <1..270
                     /locus_tag="VLF16_10335"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007962091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HSX71320.1"
                     /translation="DQQQLWWETTRLAEWLKGAFAADKMNVATLGNVVSQLHMHVIAR
                     AQQDPAWPGPVWGRHPARPYIEEEIAAIRARLRPVLTGDFQFVEA"
     gene            276..482
                     /locus_tag="VLF16_10340"
     CDS             276..482
                     /locus_tag="VLF16_10340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012017892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SlyX family protein"
                     /protein_id="HSX71321.1"
                     /translation="MDMESRIIELESRLAFQDDTIAALNDVVVEQQRAIERLQLQVAV
                     LARRQEEMAGQFGIAEDEAPPPHY"
     gene            complement(531..740)
                     /locus_tag="VLF16_10345"
                     /pseudo
     CDS             complement(531..740)
                     /locus_tag="VLF16_10345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249850.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
     gene            complement(810..1133)
                     /locus_tag="VLF16_10350"
                     /pseudo
     CDS             complement(810..1133)
                     /locus_tag="VLF16_10350"
                     /inference="COORDINATES: protein motif:HMM:NF041604.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein membrane
                     protein"
     gene            complement(1263..>2010)
                     /locus_tag="VLF16_10355"
     CDS             complement(1263..>2010)
                     /locus_tag="VLF16_10355"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003241658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HSX71322.1"
                     /translation="EGDVQRSVTGSQHYQASLSHGLAALQEPIVDDLPSVLNDLQLST
                     QQMQEQQEKFLYRLRSAQSEIQNLRGQLERAQAAATLDSLTHVFNRHAFTRLLEQALA
                     GDTKGLALVMLDIDHFKQFNDQYGHPLGDRVLQHVGQLLRELLPARGVAARYGGEEFC
                     VILHDCFDLETVGEFAERLRQKIQSLRVKVRSTDKVLDTITASFGLALAEPGDTFDSL
                     VTRADDALYQAKRNGRNQIHPPAPETALTA"
BASE COUNT          368 a          564 c          709 g          369 t
ORIGIN      
        1 gatcagcagc aactatggtg ggaaacgaca cgcctggcgg aatggctcaa gggtgctttt
       61 gccgcggata agatgaatgt cgcgaccctg ggtaatgtcg tgagtcagct gcacatgcat
      121 gtcatcgcgc gtgctcagca agatccggcc tggccagggc cggtctgggg caggcatcct
      181 gctcggccct atatagagga agagatcgct gccattcgtg cgcgactacg cccggtgctg
      241 acgggcgact tccagttcgt cgaggcatga gggtgatgga tatggaatct cgcatcatcg
      301 agctggaaag tcggctggcc tttcaggatg acaccattgc cgcgctaaac gacgtggtgg
      361 tcgagcagca gcgggcgatc gaacgcttgc aattgcaggt tgcggtgctg gctcgtcggc
      421 aggaggaaat ggcggggcag ttcggtattg ccgaggacga agcgccgcca ccgcattatt
      481 gatacccata aaaaagcccg catcagcggg cttttttaat cgcgatggaa tcagcggggc
      541 agggcgatga tcacgtcttc ggcctgcagg cctttgtcac gctgcatcac cgagaactcc
      601 acacgctggc cttcgaccag gatacggtgg ccctcgccgc ggatggcgcg gaagtgcacg
      661 aagatgtcat cgccgctgtc gcgcgcgatg aagccgaagc ccttggacgt attgaaccac
      721 ttgacggtac cggtctcgcg gctgtcgtca ttgtcgcggc gagcgacggg ggcgctcgga
      781 gtgcgcttgc cgagattgat ggccaggtgc agagcggcgg cgatcagtag tgtggcgagg
      841 ctcagggcaa cggccggctg gctgccaatc tgcgccagcg gcgcgagcag aatcagcgcc
      901 tgcaggacgc tggcgaagac cagcagagcg gagaccaggg cttgcagctg gctgcgaacg
      961 ccctcgtggc gaaccggcag cagcggggag atcagcagat tgagcaggcc gaacagggcc
     1021 aggtagatgg cgtcgggttg ctgcagataa ggcatggcct cgctgcgcag ggtgggtgcg
     1081 aaggacaaca gcagagcgcc gccgcctgtg atcaggtgaa cgatcttcaa catgtcaggg
     1141 actcacttgt tcgagaaagg ctgtcaatga gcgggctgcc cggtgattgg gctcggctcc
     1201 gcctatgccg cagcaatgcg gcaccgggcg ctatttaaca gcaaagggga tgtctactca
     1261 aatcaagcgg ttagcgcggt ttccggcgcg ggtgggtgta tctggttgcg gccgttgcgt
     1321 ttggcctgat aaagcgcatc gtcggcgcgg gtgaccaggc tgtcgaaggt gtctccgggt
     1381 tcggccaggg ccaggccgaa cgaggcggtg atggtgtcga gcaccttgtc cgtgctgcgc
     1441 accttcacgc gcagggactg gatcttctgg cgcagccgtt cggcgaattc gccaacggtc
     1501 tccagatcga aacagtcgtg caggatcacg cagaactcct cgccgccata ccgcgcggcg
     1561 acgccgcggg cagggagcag ttcgcggagc agctggccga cgtgctgcag cacgcggtca
     1621 cccagcgggt ggccgtattg gtcgttgaac tgcttgaaat ggtcgatatc cagcatcacc
     1681 agggccagtc ccttggtgtc gccggccagc gcctgctcca gcaggcgggt gaaagcgtgg
     1741 cgattgaaca cgtgggtcag gctgtccagg gtggcggcgg cctgggcgcg ttccagctgg
     1801 ccgcgcagat tctggatctc ggactgcgcc gagcgcaggc ggtagagaaa tttctcctgc
     1861 tgctcctgca tctgttgggt gctcagctgc aggtcgttga gcacgctggg caggtcgtcg
     1921 acgatcggtt cctgcagagc ggcgaggcca tgcgacagac tggcctggta gtgctggctg
     1981 ccggtcacgc tgcgctgcac gtcgccctcg
//
LOCUS       DATIHC010000624         3212 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_932, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000624 DATIHC010000000
VERSION     DATIHC010000624.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3212
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_932"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1110
                     /locus_tag="VLF16_10360"
     CDS             <1..1110
                     /locus_tag="VLF16_10360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019579912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HSX71323.1"
                     /translation="KVAIAREIGLTLAKRFDVRALQVMAQYDPELRDNTVSEWRARLL
                     LRHGRWEDAYQLTSRLPAELGSTSRWRYWHARSLQLAKPEDQQALALYEQLAKERDFY
                     GFLAADRIQAPYSLNNKPMAIDPQLMQKVRSTAGIRRALEFHDRGQIVDGRREWYHVS
                     RLFSREELVAQAKLAFDRQWYFPAIRTISQAKYWDDLDIRFPMAHRSSLTQQAKVRGL
                     HSSWVFAITRQESAFMADARSPVGAMGLMQLMPGTAKETARKFGIALGDPRQALVPEK
                     NIQLGAAYLSQVHAQFNGNRVLASAAYNAGPGRVRQWLRGADHLAFDVWVENIPFDET
                     RQYVQNVLSYSVIYGQKLGAPQPLVDWHERFFDDQ"
     gene            complement(1414..2217)
                     /locus_tag="VLF16_10365"
     CDS             complement(1414..2217)
                     /locus_tag="VLF16_10365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HSX71324.1"
                     /translation="MQLSALYRYPLKSARGESLVSSPLESLGLHGDRRWMLVEPESGR
                     FLTQRLLPQLSQLSALYNADGGLSLSAPGFDGLEVALPQPDQDLRGVTLWRDTLRVPD
                     AGDAAAEWLSRFIGRPCRLVQVPEARARQVDTGYAQPGDKVAFADGFPLLLIGQASLD
                     DLAARVGRPLEMLRFRPNLVIEGSAPYAEDGWKRIRIGDLEFDVAKGCSRCILTTIDP
                     QTGERNADREPLTTLKTYRERNGEVYFGQNLLPRGVGELRVGMPVEVLE"
     gene            2353..>3212
                     /locus_tag="VLF16_10370"
     CDS             2353..>3212
                     /locus_tag="VLF16_10370"
                     /inference="COORDINATES: protein motif:HMM:NF012245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSX71325.1"
                     /translation="MPAHQIAAGQAEPDRPTLPRAYPLLVCCQLLLIAAVLTQADNGL
                     RLVALALAVPIFALGWRLRATQRVNILSERLTAINGGLVDLSESQATPTGQDNGIGTL
                     QRLTGRLRESIGSLQRSSLRVAVGAAGARLQAERAAEDARQQQSLAEQIFQASEQTTA
                     ALQDAASRSGGITEMNSRNLDLARQSQARLGEACQQMQDIGQLMDGFQRNITELDGTS
                     TRVREILATVQDFSTQTNMLALNAAIEAARAGEAGRGFAVVADEVRNLSLKVGSAAQQ
                     IGELMGQMTSA"
BASE COUNT          559 a         1163 c         1021 g          469 t
ORIGIN      
        1 aaggtcgcca tcgcccgcga aatcggcctg accctggcca agcgcttcga cgtgcgcgcc
       61 ctgcaggtca tggcccagta cgacccggaa ctgcgcgaca acaccgtctc cgagtggcgc
      121 gcccgcctgc tgctgcgcca cggccgctgg gaggacgcct accagttgac cagccgcctg
      181 cccgccgaac tcggcagcac cagccgctgg cgctactggc acgcgcgcag cctgcagctg
      241 gccaagccgg aggaccagca ggccctggcg ctttacgaac agctggccaa ggagcgcgac
      301 ttctatggtt tcctcgccgc cgaccgcatc caggcgccct acagcctgaa caacaagccg
      361 atggccatcg acccgcagct gatgcagaag gtacgcagca ccgccggcat ccgccgcgcg
      421 ctggaattcc atgaccgcgg ccagatcgtc gacggccgcc gcgagtggta ccacgtcagc
      481 cgcctgttca gccgcgagga gctggtggcc caggccaagc tggccttcga caggcagtgg
      541 tacttcccgg ccatccgcac catcagccag gccaagtact gggacgacct ggacatccgc
      601 ttccccatgg cccaccggag cagcctgacc cagcaggcca aggtgcgcgg cctgcactcc
      661 agctgggtat ttgccatcac ccgccaggag agcgccttca tggccgacgc ccgctcgccg
      721 gtcggcgcca tgggcctgat gcagctgatg ccgggcaccg ccaaggagac cgcgcgcaag
      781 ttcggcattg cgctgggcga cccgcgccag gcgctggtgc cggagaagaa catccagctc
      841 ggcgccgcct acctgagcca ggtgcatgcg cagttcaacg gcaaccgggt gctcgcctcc
      901 gccgcctaca acgccggccc cggccgcgtg cgccaatggc tgcgcggcgc cgatcacctg
      961 gccttcgatg tgtgggtgga gaacattccc ttcgacgaaa cccgccagta cgtgcagaac
     1021 gtgctgtcct actcggtgat ctacggccag aagctcggcg cgccgcagcc gctggtggac
     1081 tggcacgagc gcttcttcga cgaccagtga gaacctgccc acgagcacgc tgcgcgttgg
     1141 aaaactgcgc tgggaatagc ctggatcgcc agcccggtcg gattgctcat tgaccatccg
     1201 tcaactcgcg tgcgagccca gtccgcttcc tccgctctcc ccgcctggtt tttctccagc
     1261 tcgctagctg atgaacgggt tcgaacaata ataagggcgc ccatgggcgc ccttatcgtt
     1321 tctgctacag ccccactcca gtgtgctgta gcccggatgc aatccgggca tcatctcctc
     1381 gcgacttccc ggatgacatc cgggctgcgc cagctactcc agcacctcca ccggcatgcc
     1441 cacgcgcagc tcgccgacgc cgcgcggcag caggttctgg ccgaaataca cttcgccgtt
     1501 gcgctcgcgg taagtcttca gggtggtcag aggctcgcgg tcggcgttgc gctcgccggt
     1561 ctgcgggtcg atggtggtga ggatgcagcg gctgcagccc ttggccacgt cgaactccag
     1621 gtcgccgatg cgaatgcgct tccagccgtc ctcggcgtag ggcgcgctcc cctcgatcac
     1681 cagattggga cgaaagcgca gcatctccag cggccggccg acccgcgcgg ccagatcgtc
     1741 cagcgaggcc tggccgatca gcagcaatgg gaaaccgtcg gcgaacgcca ccttgtcgcc
     1801 gggctgggca tagccggtgt cgacctggcg cgcccgcgcc tcgggcacct gcaccaggcg
     1861 gcagggccgg ccgatgaagc ggctcagcca ttccgccgcg gcgtcgccgg catccggtac
     1921 gcgcagcgtg tcgcgccaca gggtcacgcc gcgcagatcc tggtcgggct gcggcagcgc
     1981 cacctccagg ccgtcgaaac ccggcgcgct caggctgagg ccgccatccg cgttgtacaa
     2041 cgcactcagc tggctcagct gcggcaacag gcgctgggtg agaaagcgcc cgctctccgg
     2101 ctccaccagc atccaccggc gatcgccgtg cagcccgagg ctctccagcg gcgaactgac
     2161 gaggctctcg ccgcgagcgg acttgagcgg gtagcgatag agggcggaca gctgcatgga
     2221 agcctcggat aggaagaaag gattaaccgc tcgttcaacc gaaagagcga tgtgctcggc
     2281 gtcacactat ttgcaaccat gccggagcga gttcaagcca ataaaaccaa taacagcgct
     2341 gcaggtgtac tcatgcccgc ccatcagatt gccgccggcc aggccgagcc ggatcgcccc
     2401 actcttccca gggcctaccc gctgctggtg tgctgccagc tcctgttgat cgctgcggta
     2461 ctgacccagg cggacaatgg tctgcgtctg gtcgccctgg cgctggccgt gccgatcttc
     2521 gccctcggct ggcgcctgcg tgcgacgcag cgggtaaaca tactgagcga gcgcctgacg
     2581 gcaatcaatg gcggcctcgt cgacctcagc gaaagccaag ccacgcccac cgggcaggac
     2641 aatggcatcg gcacgctgca acggctcacc ggccgcctgc gcgagagcat cggcagcctg
     2701 cagcgcagca gcctgcgggt ggccgtcggt gcggccggcg cgcgcctgca ggccgaacgc
     2761 gcggccgagg atgcccgtca gcagcagtcg ctggccgaac agatcttcca ggccagcgag
     2821 cagaccactg ccgccctgca ggacgcggcc tcacgcagcg gcggtatcac cgagatgaac
     2881 agccgcaacc tggacctggc gcgccagtcc caggcccggc tcggcgaggc ctgccagcag
     2941 atgcaggaca tcggccagct gatggacggt ttccagcgca acatcaccga actcgacggc
     3001 acctccacgc gggtgcgcga aatcctcgcc acggtgcagg acttctccac ccagaccaac
     3061 atgctcgcgc tcaacgccgc catcgaggcc gcccgagccg gcgaggccgg gcgcggcttc
     3121 gccgtggtcg ccgacgaggt gcgcaacctg tcgctcaagg tcggcagcgc ggcccagcag
     3181 atcggcgaac tcatgggtca gatgaccagc gc
//
LOCUS       DATIHC010000625         3522 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36749, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000625 DATIHC010000000
VERSION     DATIHC010000625.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3522
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36749"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..915)
                     /gene="alr"
                     /locus_tag="VLF16_10375"
     CDS             complement(<1..915)
                     /gene="alr"
                     /locus_tag="VLF16_10375"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008784 - alanine racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HSX71326.1"
                     /translation="MRPLVATIDLAAVVHNYQLAKRCAPGRQAFAVVKANAYGHGVRE
                     VVSALHGEADGFAVASLEEAAEVRAMHGEARILLLEGCFAADELPMAAHLGLDLVLQG
                     PEQVDALLAAELARPLNVWLKLDSGMHRLGLEPAAVRALFPRLRGAAQVAELNLLSHF
                     ACADEREHSLNEVQLECFLDLLDLDFDQRSLANSAALLMIPASHMDWVRPGIMLYGAT
                     PFAEHSAAELGLKPAMSLDAQLIAVREVAQGESVGYGAGWVAERPSRIGTVSCGYADG
                     YPRHAPAGTPVWIGGRRLPLAGRVCMDML"
     gene            complement(1164..2558)
                     /gene="dnaB"
                     /locus_tag="VLF16_10380"
     CDS             complement(1164..2558)
                     /gene="dnaB"
                     /locus_tag="VLF16_10380"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HSX71327.1"
                     /translation="MNDISVPQQYDLETAALKVPPHSIEAEQAVLGGLMLDNNAWERV
                     SDAVSDGDFYRHDHRLIFRAIFTLAERNSPFDVVTLSEQLDKEGHLSQVGGLGYLGEL
                     AKNTPSVANIKAYAQIIRERATLRQLIGISNDIADMAYAPQGKSAVEVLDEAERQIFQ
                     IAEARPKAGGPVGINEILVKTIDRIDELFNTNEGLTGISTGFTDLDGMTSGLQPADLV
                     IVAGRPSMGKTTFAMNLVENAVLRSDKVILVFSLEMPSDSIVMRMLSSLGRIDQTKVR
                     SGKLDDDDWPRLTSAVNLLNERKLFIDDTAGISPTEMRARARRLAREHGDIGMIMVDY
                     LQLMRIPGSSGDNRTNEISEISRSLKALAKEFNCPVIALSQLNRSLEQRPNKRPVNSD
                     LRESGAIEQDADIIMFVYRDEVYHPETEYKGVAEIIIGKQRNGPIGTCRLAFIGKYTR
                     FDNLAPGLYNFEED"
     gene            complement(2709..3155)
                     /gene="rplI"
                     /locus_tag="VLF16_10385"
     CDS             complement(2709..3155)
                     /gene="rplI"
                     /locus_tag="VLF16_10385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004883587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HSX71328.1"
                     /translation="MEVILLEKIANLGNLGDKVNVKAGYGRNYLLPQGKATAATAENV
                     AAFEARRAELEKAAAEKKASAESRAAQLAELEVTITAVAGDEGKLFGSIGTHDIAEAL
                     TASGVEVSKAEVRLPNGTIRQVGEFDVAVHLHTDVETTVKVIVVAA"
     gene            complement(3177..>3522)
                     /locus_tag="VLF16_10390"
     CDS             complement(3177..>3522)
                     /locus_tag="VLF16_10390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020306867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71329.1"
                     /translation="GGFGLEFRALRLPAPLAFGLLAVMFLAPNLGLELAMLTPMCSVP
                     LALAGVALLHGLAAAGRLARFWLVGLYVSMLLFMQLVYPLLVVLATVDSLMDFRGRLA
                     RKDGAGPANGEG"
BASE COUNT          589 a         1144 c         1204 g          585 t
ORIGIN      
        1 cagcatgtcc atgcacaccc gaccggccag cggcagccgg cgcccgccga tccagaccgg
       61 cgtgccggcg ggggcgtggc gtgggtagcc gtcggcgtaa ccgcagctca ccgtaccgat
      121 gcgcgacggc cgctcggcga cccagccggc gccgtagccg acgctctcgc cctgcgccac
      181 ctcgcgcacg gcgatcagct gcgcgtccag gctcatggcc ggtttcaggc ccagctcggc
      241 ggcggaatgc tcggcgaacg gcgtggcacc gtagagcatg atgccggggc ggacccagtc
      301 catgtgcgac gccgggatca tcagcagcgc cgccgaattg gccaggctgc gctggtcgaa
      361 gtccaggtcg agcagatcga ggaagcactc cagctgcact tcgttgaggc tgtgctcgcg
      421 ctcgtcggca caggcgaagt ggctgagcag gttcagctcg gcgacctggg ccgcaccacg
      481 caggcgcggg aacagcgcgc gcacggccgc gggctcgagg cccaggcgat gcatgccgga
      541 atccagcttg agccagacgt tcagcggccg cgccagctcg gcggcgagca acgcatcgac
      601 ctgctccggg ccttgcagca ccaggtccaa ccccaggtgc gcagccatcg gcaactcgtc
      661 ggcggcgaag cagccctcta gcagcaggat gcgcgcctcg ccgtgcatgg cgcgcacttc
      721 ggcagcctcc tccaggctgg ccacggcgaa gccgtccgcc tcgccatgca gcgcgctcac
      781 cacctcgcgc acgccgtgcc cgtaggcatt cgccttgacc accgcgaagg cctggcgccc
      841 cggcgcgcag cgcttggcca actggtagtt gtggacgacg gcggccagat cgatggtggc
      901 gacgaggggg cgcatgaggg gcttccggaa agaaaacggg cgcccatctt aaccgctggg
      961 cgcccgtttt cattgagcgg gatcagcccc ttcgccgctc agaccgtagc gaacgcaagg
     1021 agcccgaaac gcggcaagcg gagtggacca gcggttcagg agcatgactc gcgacgctcg
     1081 ccctgtggac gttcagccgg aggctgtacg ggcaccgcgc gacacagtcc aggcatcgcg
     1141 cagtcggcga gaccggtgaa gggtcagtct tcctcgaagt tgtagagccc cggcgccaag
     1201 ttgtcgaagc gcgtgtactt gccgatgaag gccaggcggc aggtgccgat ggggccgtta
     1261 cgctgcttac cgatgatgat ctcggccacg cccttgtact cggtctccgg gtgatacacc
     1321 tcgtcgcggt agacgaacat gatgatgtcg gcgtcctgtt cgatcgcccc ggattcacgc
     1381 aggtcggagt tgaccgggcg cttgttgggg cgctgttcca gggagcggtt gagctgcgac
     1441 agggcgatca ccgggcagtt gaattccttg gccagggcct tgagcgagcg cgagatctcg
     1501 gagatctcgt tggtgcggtt gtcgccgctt gatcccggga tgcgcatcag ctgcaggtag
     1561 tcgaccatga tcatgccgat atcgccgtgc tcgcgggcca ggcggcgggc gcgagcgcgc
     1621 atttcggtcg ggctgatgcc agcggtatcg tcgatgaaca gcttgcgctc gttgagcagg
     1681 ttgaccgcgg aggtcaggcg cggccagtcg tcgtcgtcca gcttgccgga acgcaccttg
     1741 gtctggtcga tgcgaccgag cgacgagagc atacgcatca cgatcgagtc gctgggcatc
     1801 tccagggaga acaccagaat caccttgtcc gaacgcagca cggcgttctc caccaggttc
     1861 atggcgaagg tggtcttacc catggacgga cggccggcga cgatcaccag gtccgccggc
     1921 tgcaggccgc tggtcatgcc gtccaggtcg gtgaagccgg tggagatgcc ggtcaggccc
     1981 tcgttggtgt tgaacagctc gtcgatgcgg tcgatggtct tgaccaggat ctcgttgatc
     2041 cccaccgggc cgccggcctt gggccgcgcc tcggcgatct ggaatatctg tcgctcggcc
     2101 tcgtcgagca cctcgacggc gctcttgccc tggggcgcgt aggccatgtc ggcgatgtcg
     2161 ttgctgatgc caatcagctg gcgcagcgtg gcgcgctcgc gaatgatctg cgcgtaggcc
     2221 ttgatgttgg ccaccgacgg ggtgttcttg gccagctcgc cgaggtagcc gaggccgccg
     2281 acctggctga ggtggccttc cttgtccagc tgctcggaca gggtcaccac gtcgaacggc
     2341 gagttgcgct cggccagggt gaagatggcg cggaagatca ggcggtggtc atgccggtag
     2401 aagtcgccgt cggacaccgc gtcggagacc cgctcccagg cattgttgtc gagcatcagg
     2461 ccgcccagca cggcctgttc ggcctcgatg gaatgcggcg gcaccttgag tgcggcggtt
     2521 tccaggtcgt actgctgagg gacgctgata tcgttcatgg cacctgtgat tccgggcatt
     2581 cagaggcttt tgcgcaggca ggctccgcaa aaggctctcg caaaaaacaa cgggcacgca
     2641 ccgcgaagcg atgagtgccc gattgtcggc aggcccgcac gtgtgcgcaa gcccgcgggt
     2701 cgctcgcctt aggcggcgac cacgatcacc ttgacggtgg tctcgacgtc ggtgtgcagg
     2761 tgcacggcaa cgtcgaactc gccgacctgg cggatggtgc cgttcggcag acgcacttcg
     2821 gccttggaca cttccacgcc ggaggcggtc agggcttcgg cgatgtcgtg ggtaccgatg
     2881 gaaccgaaca gcttgccttc gtcaccggcc acggcagtga tggtgacttc cagctcggcc
     2941 agctgagcag cgcgagattc ggcggaggcc ttcttctcgg cagcggcttt ttccagctcg
     3001 gcgcgacggg cttcgaacgc ggcgacgttc tcggcggtag cggcggtggc cttgccctgc
     3061 ggcagcaggt agttacgacc gtaaccggcc ttgacgttca ccttgtcgcc caggttgccc
     3121 aggttggcga ttttttccag caggataact tccatttggg tcttacctct taacttttaa
     3181 ccttcaccgt tcgcggggcc ggcgccatct ttgcgcgcca ggcgaccgcg aaaatccatc
     3241 agactgtcga cggtggccag gaccaccagc aacggataaa ccagctgcat aaacagcagc
     3301 atcgacacgt acagccccac cagccagaag cgggccaggc gccccgccgc ggccaggccg
     3361 tgcagcagag cgacaccggc cagcgccagc ggcacgctgc acatcggcgt cagcatggcc
     3421 agctccaggc ccaggttggg cgccaggaac atgaccgcca acagcccgaa ggccagcggt
     3481 gcgggcaggc gcagggcacg aaactcgagc ccgaagccgc cg
//
LOCUS       DATIHC010000626         1731 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_15015, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000626 DATIHC010000000
VERSION     DATIHC010000626.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1731)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1731
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15015"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1480)
                     /gene="glnD"
                     /locus_tag="VLF16_10395"
     CDS             complement(<1..1480)
                     /gene="glnD"
                     /locus_tag="VLF16_10395"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008773 - [protein-PII]
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0018177 - protein uridylylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="[protein-PII] uridylyltransferase"
                     /protein_id="HSX71330.1"
                     /translation="MPQMDPELFDRGQFQAELALKSSPIAAFKKAIKQAREVLDTRFR
                     EGRDIRRLVEDRAWFVDQILQEAWKRFAWSEDADIALLAVGGYGRGELHPYSDIDLLI
                     LLDSADHETFREPIECFLTLLWDIGLEVGQSVRSVDECAEEARADLTVVTNLMESRTI
                     AGPERLRQRMQEVTSSAQMWPSKHFFLAKRKEAKARHAKYNDTEYNLEPNVKGSPGGL
                     RDIQTILWVARRQFGSLNLHSLVQQGFLVDSEYSMLASAQEYLWKVRYALHMLAGRAE
                     DRLLFDHQRNIAALLGFEDGDGKLAVERFMQKYYRVVMGVAELSELINQHFEDVLLRE
                     SESGTAQPLNSRFQVRDGYIEVVHPNVFKRTPFAILEVFVLMAQRPEIKGVRADTIRL
                     LRDNRHLIDDEFRKDIRNTSLFIELFKSPQGIHRNLRRMNRYGILGRYLPEFGHIVGQ
                     MQHDLFHIYTVDAHTLNLIKHLRKLKWPELAEKFPLASKVIDK"
     gene            complement(1567..>1731)
                     /locus_tag="VLF16_10400"
     CDS             complement(1567..>1731)
                     /locus_tag="VLF16_10400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HSX71331.1"
                     /translation="NQGRPETRLLGDGWTAITKDRKLSAQWEHTVLVTESGYEILTLR
                     SDDTLPRTSA"
BASE COUNT          265 a          521 c          612 g          333 t
ORIGIN      
        1 gcttgtcgat gaccttgctg gccagcggga atttctccgc cagctcgggc cacttcagct
       61 tgcgcaggtg cttgatcagg ttgagcgtgt gggcgtcgac cgtatagatg tggaacaggt
      121 cgtgctgcat ctgcccgacg atgtggccga actccggcag atagcggccg aggatgccgt
      181 agcggttcat ccgccgcagg ttgcggtgga tgccctgggg cgacttgaac agctcgatga
      241 acaggctggt gttgcggatg tccttgcgga actcgtcgtc gatcaggtga cggttgtcgc
      301 gcagcaggcg gatggtgtcg gcgcgcacgc ccttgatctc ggggcgctgg gccatcagca
      361 cgaagacttc gaggatggcg aacggggtgc gcttgaagac gttgggatgg acgacctcga
      421 tatagccgtc gcggacctgg aagcggctgt tcagcggctg cgccgtcccg ctctcgctct
      481 cgcgcaggag tacgtcctcg aaatgctggt tgatcagctc ggacagctcg gcgacgccca
      541 tcaccacccg gtagtacttc tgcatgaagc gctcgacggc gagcttgccg tcgccgtcct
      601 cgaagccgag cagggcggcg atattgcgct gatggtcgaa cagcaggcgg tcctcggcgc
      661 ggcccgccag catgtgcagc gcgtaacgca ccttccacag gtattcctgg gccgaggcca
      721 gcatgctgta ttcgctgtcg accagaaaac cctgttgcac cagcgagtgc aggttgaggc
      781 tgccgaactg gcggcgggcg acccagagga tcgtctggat gtcgcgcagg ccgccgggcg
      841 agcccttcac attgggctcc aggttgtact cggtgtcgtt gtacttggcg tggcgcgcct
      901 tggcttcctt gcgcttggcg aggaagaagt gcttgctcgg ccacatctgc gcgctgctgg
      961 tgacctcctg catgcgctgg cgcaggcgct cggggccggc gatggtgcgg ctctccatca
     1021 ggttagtgac caccgtcagg tcggcgcgcg cttcttcggc gcattcatcc acgctgcgca
     1081 cgctctggcc gacttccagg ccgatgtccc agagcagggt gaggaagcac tcgatgggtt
     1141 cgcggaaggt ctcgtggtcg gcgctgtcga ggaggatcag caggtcgatg tcggagtagg
     1201 ggtgcagctc gccgcggcca tagccgccaa cggccagcag ggcgatgtcg gcgtcttcgc
     1261 tccaggcgaa gcgcttccag gcctcctgga gaatctggtc gacgaaccag gcgcggtctt
     1321 cgaccaggcg acgaatgtcg cggccctcgc gaaagcgcgt gtccagcacc tcgcgcgcct
     1381 gcttgatggc cttcttgaag gcggcgatgg ggctggactt gagtgccagt tccgcctgga
     1441 actggccgcg gtcgaacaac tccgggtcca tctgcggcat cgcgccttcc tcatatatat
     1501 ggggtgcgcg ttgcgcacca tgcgccaaga aaaccggtgc ggcaggcgcg ccgcacgcga
     1561 cagccgtcag gccgaggtgc gcggcagggt gtcgtcgctg cgcagggtga ggatctcgta
     1621 gccgctttcg gtgaccagca cggtgtgttc ccactgggcg gagagcttgc gatccttggt
     1681 gatggcggtc cagccgtcgc cgagcaggcg ggtttccggg cggccctggt t
//
LOCUS       DATIHC010000627         1704 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4048, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000627 DATIHC010000000
VERSION     DATIHC010000627.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4048"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1062
                     /locus_tag="VLF16_10405"
     CDS             <1..1062
                     /locus_tag="VLF16_10405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003240518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015129 - lactate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015727 - lactate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HSX71332.1"
                     /translation="PLIMVLMLTRFFGREKSWKAGFEVLPFAVFAGLAFTLPYAATGI
                     LLGPEFPSLLGGLIGLAIVTTAARAGFLVPKRHWDFAPASEWPNEWLGSVEMKLDSLT
                     VKPMSTLRAWLPYVLVGALLVISRVFPEVGAALKSVVLVFPDILGEAGVKADFMPLYL
                     PGGILVAVVAATFFLHGMKLGELTAAVKESSRVLLGAGFVLLFTVPMVRILINSGVNA
                     ADLASMPITMARYVADSVGDIYPLLAPSVGALGAFIAGSNTVSNMMLAQFQFGVAHNL
                     GISTALIVAVQAIGAAAGNMVAIHNVVAASATVGLLGREGTTLRKTIWPTLYYVLFTG
                     LIALFAIYVMGISDPLIAR"
     gene            1125..>1704
                     /locus_tag="VLF16_10410"
     CDS             1125..>1704
                     /locus_tag="VLF16_10410"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HSX71333.1"
                     /translation="MIISASTDYRAAAQRKLPPFLFHYIDGGAYAEYTMRRNVEDLAG
                     IALRQRVLKNMSELSLETELFGEKLAMPVALAPVGLTGMYARRGEVQAARAAAAKGIP
                     FTLSTVSVCPIEEVAPSIDRPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPT
                     PGARYRDAHSGMSGPNAAARRMLQAVTHPAWAW"
BASE COUNT          253 a          626 c          536 g          289 t
ORIGIN      
        1 ccgctgatca tggtgctgat gctgacccgc ttcttcggcc gcgaaaaaag ctggaaggcg
       61 ggattcgagg tactgccctt cgccgtcttc gccggcctgg ccttcaccct tccctatgcc
      121 gccaccggca tcctgctcgg cccggaattc ccgtccctgc tgggcggcct gatcggcctg
      181 gccatcgtca ccaccgccgc gcgcgcgggt ttcctggtgc cgaaacggca ctgggacttc
      241 gctccggcca gcgagtggcc caacgaatgg ctgggcagcg tggaaatgaa gctggacagc
      301 ctcaccgtca aacccatgag caccctgcgg gcctggctgc cctatgtact ggtgggcgcc
      361 ctgctggtga tcagccgcgt ctttcccgaa gtcggcgccg ccctgaagtc cgtggtcctg
      421 gtgttcccgg acatcctcgg cgaggccggc gtcaaggccg acttcatgcc gctctacctg
      481 cccggcggca tcctcgtcgc ggtcgtcgcg gcgaccttct tcctgcacgg catgaagctc
      541 ggcgagctga cggcggcggt gaaggaatcc tcgcgcgtgc tgctcggcgc cggcttcgtc
      601 ctgctgttca ccgtgcccat ggtgcgcatc ctgatcaact cgggcgtcaa tgccgccgac
      661 ctggccagca tgccgatcac catggcgcgc tacgtggccg acagcgtggg tgacatctac
      721 ccgctgctgg ccccgagtgt cggcgcgctg ggtgccttca tcgccggctc caacacggtc
      781 agcaacatga tgctggcgca gttccagttc ggcgtggcgc acaacctggg catctccacg
      841 gcgctgatcg tcgcggtaca ggccatcggt gccgccgccg gcaacatggt cgccattcac
      901 aacgtcgtcg cggcctccgc caccgtcggc ctgctcgggc gcgaagggac tacgctgcgc
      961 aagaccatct ggccgaccct gtactacgtg ctgttcaccg gcctgatcgc cctgttcgcg
     1021 atctacgtca tgggcatcag cgatccgctg atcgcccgct gaccccaccg ggcccgggca
     1081 tcagtcccgg gcccggccgc atcaaaccag atagaaacga gcccatgatc atttccgcct
     1141 ccactgatta ccgcgccgcc gcgcagcgca agctgccgcc gttcctgttc cactacatcg
     1201 acggcggcgc ctacgccgag tacacgatgc ggcgcaacgt cgaggacctg gccggcatcg
     1261 ccctgcgtca gcgcgtgctg aagaacatgt ccgagctgag cctggaaacc gagctgttcg
     1321 gcgagaagct ggccatgccg gtggccctgg ccccggtcgg cctgaccggc atgtacgccc
     1381 gccgcggcga ggtgcaggcg gccagggcgg cggcggccaa gggcatcccc ttcaccctgt
     1441 ccaccgtctc ggtctgcccg atcgaggaag tggcaccaag catcgaccgg ccgatgtggt
     1501 tccagctcta cgtgctgaag gaccgaggtt tcatgcgcaa cgccctggag cgggccaagg
     1561 ccgccggcgt caccaccctg gtattcaccg tcgacatgcc cacccccggc gcgcgctacc
     1621 gcgatgccca ctccggcatg agcggcccga acgcggcggc gcggcgcatg ctgcaggccg
     1681 tcacccaccc ggcctgggcc tggg
//
LOCUS       DATIHC010000628         2855 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36752, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000628 DATIHC010000000
VERSION     DATIHC010000628.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2855)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2855)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2855
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36752"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..283
                     /locus_tag="VLF16_10415"
     CDS             <1..283
                     /locus_tag="VLF16_10415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003282433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSX71334.1"
                     /translation="AWPGNVRELQNAAERFAMGLELGLDLPGGEAEPYAGGQSLGERV
                     DAYEKALIAAEMAKGHGSLRSLAEALGLPRKTLHDRMRKHGLDMGADED"
     gene            complement(280..657)
                     /locus_tag="VLF16_10420"
     CDS             complement(280..657)
                     /locus_tag="VLF16_10420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015275284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5064 family protein"
                     /protein_id="HSX71335.1"
                     /translation="MFRPGHVEVQQQPSARVPGYRLCLEYSVCRDEAGARVEFELDGE
                     VAGQAIHGRFCLRRDVAYNFLHCAGRCLRRHGIRPTHPALFAFHQDYDRVFVDLRQQL
                     QASPGEPVDLQRFLLDRGEVKPN"
     gene            1013..2440
                     /gene="arcD"
                     /locus_tag="VLF16_10425"
     CDS             1013..2440
                     /gene="arcD"
                     /locus_tag="VLF16_10425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018610727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0043858 - arginine:ornithine antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006527 - arginine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine-ornithine antiporter"
                     /protein_id="HSX71336.1"
                     /translation="MSSSAQKLRLGALIALVVGSMVGGGIFSLPQNMANSAGAGAVLI
                     GWAITAVGMLTLAFVFQTLANRKPELDSGVYAYAKAGFGDYMGFSSAWGYWISAWLGN
                     VSYFVLLFSTLGYFFPVFGEGNTVAAVIGASLVLWGVHFLVLRGIKEAAFINTVTTIA
                     KMVPLVLFIVIATIAFKMDVFTADFWGQGNPELGSVMDQVRNMMLVTVWVFIGIEGAS
                     VYSARAEKRSDVGKATVLGFVGVLLLLVLVNVLSLGIMHQAELAGLKNPSMAYVLEHV
                     VGRWGAIFISVGLIVSLAGALLSWTLLCAEILFAAAKDHTMPDFLKKENVNQVPANAL
                     WLTNGLIQLFLIVTLFNNSTYLSLLYLATSMILVPYLWSAAYAVLLALRGETYENASG
                     ERNKDLLIGGIALVYAIWLVYAGGMQYLLLSALLYAPGAILFAKAKREQNQPVFTTVE
                     KLIFAAVVIGAIVAGYGLYDGFLSL"
     gene            2457..>2855
                     /locus_tag="VLF16_10430"
     CDS             2457..>2855
                     /locus_tag="VLF16_10430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003246302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase family protein"
                     /protein_id="HSX71337.1"
                     /translation="MSKVKLGVHSEAGKLRKVMVCSPGLAHLRLTPNNCDELLFDDVI
                     WVSQAKRDHFDFMTKMRERGIEVVEMHNLLEETVRNKEALAWILDRKITPDSVGLGLQ
                     GEVRSFIEGLEPRRIAEYLIGGVSGADLVRH"
BASE COUNT          511 a          937 c          876 g          531 t
ORIGIN      
        1 cgcctggccg ggcaacgtgc gcgagctgca gaacgccgcc gagcgcttcg ccatgggcct
       61 ggaactgggc ctcgacctgc ccggcggcga ggccgagccc tacgcgggcg ggcagagtct
      121 cggcgagcgc gtcgacgcct acgagaaggc gctgatcgcc gccgaaatgg ccaaggggca
      181 tggctcgctg cgcagcctgg ccgaggcgct cggcctgccg cgcaagaccc tgcacgatcg
      241 gatgcgcaag catggcctcg acatgggcgc ggacgaggac tagttcggct tcacctcgcc
      301 acggtccagc agaaagcgct gcaggtcgac cggctcgccc gggctggcct ggagctgctg
      361 acgcaggtcg acgaacaccc ggtcgtaatc ctgatgaaaa gcgaacagcg ccggatgcgt
      421 cggccggatg ccgtgccggc gcaggcagcg ccccgcgcag tgcagaaagt tgtaggcgac
      481 gtcgcggcgc aggcagaagc ggccgtgtat cgcctgcccg gcgacttcgc cgtccagctc
      541 gaactcgacg cgggcgcccg cctcgtcacg gcacaccgaa tattccaggc agaggcgata
      601 gcccggcacc cgtgccgaag gctgttgctg cacctcgaca tgccctgggc gaaacatatg
      661 tgtctcctct atgccgctgc ggcatatatg caacttcgag atataaaaac ttcatttaat
      721 tgcatccagt cagaaagcac tttgctatta gcgcaagttt ttttgttacc ggacttgcgg
      781 cccgcaaaac ctcgactagc ttaatttcca cgcccaacga aacggcgtgc tagagcggcc
      841 gcacagccta agccagcggt cgctaaaagc ccctttccaa agatcgatag ttgtttcagg
      901 gatagcctcc gacggaatgg atagctcgct attgatcagg atcaatatcg cttcctacat
      961 cggcgcgccc aataagacat aacttctctc cgccaaatga tggaggtgtg cgatgtcctc
     1021 ttcagcgcaa aaacttcgat taggagcact gattgccctg gtagtgggtt cgatggtcgg
     1081 cggcggcatc ttctcgttgc cacagaacat ggccaacagc gccggcgccg gagccgtgct
     1141 gatcggctgg gcgatcaccg ccgtcggcat gctgaccctg gccttcgtct tccagaccct
     1201 ggccaaccgc aagccggagc tggattcggg ggtctacgcc tacgccaagg ccggcttcgg
     1261 cgactacatg ggcttctcct ccgcctgggg ctactggatc agcgcctggc tgggcaacgt
     1321 cagctacttc gtcctgctgt tctccaccct cggctacttc ttcccggtct tcggcgaggg
     1381 caacaccgtc gccgcggtga tcggcgcctc gctggtgctc tggggcgtgc acttcctggt
     1441 gctgcgcggg atcaaggagg cggccttcat caacaccgtc accaccatcg ccaagatggt
     1501 gccgctggtg ctgttcatcg tcatcgccac catcgccttc aagatggacg tgttcaccgc
     1561 ggacttctgg ggccagggca accccgagct gggcagcgtg atggaccaag tgcgcaacat
     1621 gatgctggtc accgtgtggg tgttcatcgg catcgagggc gccagcgtct actccgcccg
     1681 ggcggaaaag cgcagcgacg tgggcaaggc caccgtgctc ggcttcgtcg gcgtgctcct
     1741 gctgctggtg ctggtcaacg tactgtcgct gggcatcatg catcaggccg aactggccgg
     1801 cctgaagaac ccgtcgatgg cctacgtgct ggagcacgtg gtcgggcgct ggggtgcgat
     1861 cttcatctcg gtcggcctga tcgtctccct ggccggtgcc ctgctgtcct ggaccctgct
     1921 gtgcgccgag atcctcttcg ccgcggccaa ggaccacacc atgccggact tcttgaagaa
     1981 ggagaacgtc aaccaggtgc cggccaacgc cctgtggctg accaacggcc tgatccagct
     2041 gttcctcatc gtcaccctgt tcaacaactc gacctacctg agcctgctgt acctggccac
     2101 ctcgatgatc ctggtgccgt acctgtggtc cgccgcctac gcggtgctgc tggccctgcg
     2161 tggcgagacc tacgagaacg cctcgggcga acgcaacaag gatctgctga tcggcggcat
     2221 cgccctggtc tacgcgatct ggctggtcta tgccggcggc atgcaatacc tgctgctctc
     2281 cgccctgctc tacgcgcccg gcgcgatcct cttcgccaag gccaagcgcg agcagaacca
     2341 acccgtattt accacggttg agaagctcat cttcgcggcc gtcgtgatcg gcgccatcgt
     2401 cgccggctac ggcctctacg acggcttcct cagcctttaa ccccaggagg ttcaccatgt
     2461 ccaaggtcaa actcggcgtc cattcggaag caggcaagct gcgcaaggtg atggtctgct
     2521 cgcctggact cgcccacctg cggctgaccc ccaacaactg cgacgaactg ttgttcgacg
     2581 acgtgatctg ggtgagccag gccaaacgcg accacttcga cttcatgacc aagatgcgcg
     2641 agcgcggcat cgaggtggtg gagatgcaca acctgttgga agagaccgtg cgcaacaaag
     2701 aggcgctggc ctggatcctc gatcgcaaga tcaccccgga cagcgtcggc ctcggcctgc
     2761 agggcgaggt gcgttcgttc atcgaaggtc tggagccgcg ccgcatcgcc gaatacctga
     2821 tcggcggcgt gtccggtgct gacctggtgc ggcac
//
LOCUS       DATIHC010000629         1610 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11052, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000629 DATIHC010000000
VERSION     DATIHC010000629.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1610
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11052"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            80..1153
                     /locus_tag="VLF16_10435"
     CDS             80..1153
                     /locus_tag="VLF16_10435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009047793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HSX71338.1"
                     /translation="MLNNDRLLVQILLLALLGACAWVLAPFFSALFWAGVLAFASWPL
                     MRLLTRALDGRETTAAAILTGCWMVLVAVPLVLLGFNLADHIRDATELFKGFQVDGLP
                     DPPAWLGDLPLVGERLVGVWTRIDQEGVALLASVRPYLGQVGNWLLARSAQIGGGMLE
                     LALSLVLVFFFYRDGPRMAAFAHSLLERLIGDRADHYLELVAGTVQRVVNGVIGTAAA
                     QALLAMIGFYIAGVPGALVLGLITFVLSLIPMGPPLVWIPATAWLVSQEQYGMAVFLG
                     IWGMFVISGVDNVLKPYLISRGGNLPLVVVLLGVFGGILAFGFMGLFLGPTLLAVAFS
                     LLGDWVASTPRVAAVEAERKDRE"
     gene            1347..>1610
                     /locus_tag="VLF16_10440"
     CDS             1347..>1610
                     /locus_tag="VLF16_10440"
                     /inference="COORDINATES: protein motif:HMM:NF017870.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF945 family protein"
                     /protein_id="HSX71339.1"
                     /translation="MKKSAGIAVGALVAVAAIGAGGAWYTGNQLPKVLDESIKQANAD
                     MAKTLPALGLDASIELLSLERQFLSSNARYRITFNGSLDGDEPR"
BASE COUNT          221 a          543 c          547 g          299 t
ORIGIN      
        1 cggggctgcg tttgcaacaa ctacgctgaa caatggtgcg tgccgggccg cttctgcccg
       61 gttcttggaa tctcgaatca tgctgaacaa tgatcgcctg ctggtgcaga tcctgttgct
      121 ggcgctgctc ggcgcctgtg cctgggtgct ggcgccgttc ttctccgcct tgttctgggc
      181 cggcgtgctg gcctttgcca gctggccgct gatgcgcctg ctgacccgcg ccctggatgg
      241 ccgtgaaacc accgccgcgg ccattctcac cggctgctgg atggtgctgg tggcggtgcc
      301 gctggtgctg ctcggcttca atttggccga ccacattcgc gatgccaccg agctgttcaa
      361 gggcttccag gtcgacggcc tgccggaccc gcccgcctgg ctcggcgacc tgccgctggt
      421 gggcgagcgt ctggtcggcg tctggacgcg catcgatcag gagggcgtgg ccctgctggc
      481 gtcggtgcgc ccttacctgg gccaggtggg caactggctg ctggcccgca gtgcgcagat
      541 cggcggcggc atgctggagc tggccctgag cctggtgctg gtgttcttct tctaccgcga
      601 cggcccacgc atggcggcct tcgcccacag cctgctggag cggttgatcg gcgaccgcgc
      661 cgaccattac ctggaactgg tggccggcac cgtgcagcgg gtggtcaacg gcgtgatcgg
      721 caccgccgcg gcgcaggcgc tgctggccat gatcggcttc tacatcgccg gcgtgccggg
      781 cgcgctggtg ctgggcctga tcaccttcgt cctcagcctg atccccatgg gcccgccgct
      841 ggtgtggatt cccgccaccg cgtggctggt cagccaggag cagtacggca tggcggtgtt
      901 cctcggcatc tggggcatgt tcgtcatcag cggcgtggac aacgtgctca agccctacct
      961 gatcagccgt ggcggcaacc tgccgctggt ggtggtgctg ctcggcgtgt tcggcggcat
     1021 tctggccttc ggcttcatgg gcctgttcct cggcccgacc ctgctggcgg tggccttcag
     1081 cctcctcggc gactgggtcg ccagcacgcc gcgggtcgcc gcggtagagg cggagcgcaa
     1141 ggaccgggag tagttggcat cctgtgcaga atcctgctca ccccgcttgg tgggcatgcg
     1201 gaggcggtga tagccttgcc cggcttcccg gcccactagc agccggagca gggctgacgc
     1261 cccgcctcag accgcgacga tcgagtccgt agaggccacg cgcggttcag ggaagaaaga
     1321 ccaacaccac acaacggaca tatgccatga aaaaatctgc aggtatcgct gtaggcgcac
     1381 tcgttgccgt cgccgccatc ggcgcgggcg gcgcctggta caccggcaac cagctgccca
     1441 aggtactgga cgaatcgatc aagcaggcca acgccgacat ggccaagacc ctgccggcac
     1501 tgggcctgga cgcttccatc gagctgctgt cgctggagcg ccagttcctc agcagcaacg
     1561 cccgctaccg catcaccttc aacggctcgc tggacggcga cgagccgcgc
//
LOCUS       DATIHC010000630         2527 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_32196, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000630 DATIHC010000000
VERSION     DATIHC010000630.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2527
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32196"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..182)
                     /locus_tag="VLF16_10445"
     CDS             complement(<1..182)
                     /locus_tag="VLF16_10445"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003114776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HSX71340.1"
                     /translation="MSDKRLLHTAHIPVRWGDMDNYGHVNNTVYLEYVQEARVAWFAS
                     VGIDIDHAPQGPVVLQT"
     gene            293..991
                     /locus_tag="VLF16_10450"
     CDS             293..991
                     /locus_tag="VLF16_10450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008099224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HSX71341.1"
                     /translation="MRMIDASWLDRLGRLCACALLAALPLAANAEEDPWEGFNRPVFR
                     FNDTLDTYALKPVAKGYQAVTPQFLEDGVHNVFRNIGDVTNLANNLLQGKVHDAGVDT
                     GRLIFNTTFGLLGFFDVASEMGLQRSDEDFGQTLGAWGVGSGPYLVIPLLGPSSLRDA
                     PARFPDSFLGPYPYIDHVPTRNVTRAVNVVDTRASLLSAEKMVTGDKYIFIRNAYLQN
                     REFRVQDGEVVDDF"
     gene            complement(1041..1340)
                     /locus_tag="VLF16_10455"
     CDS             complement(1041..1340)
                     /locus_tag="VLF16_10455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014820049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HSX71342.1"
                     /translation="MSQNDRAYSEKRDFIRMRLEAPVILHHAGQEIEAQCLDLSSTGM
                     QVEANCQIAVGDRVKVHIPSEHSELKGLDAQAEVVRVTPLDDGRASIGLAILSMS"
     gene            1556..>2527
                     /locus_tag="VLF16_10460"
     CDS             1556..>2527
                     /locus_tag="VLF16_10460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX71343.1"
                     /translation="MHKPSAKLLLIDDDEVVRASIAAYLDDSGFQVLQAGNGLQGLEV
                     FEREQPDVIICDLRMPQIDGLELIRRINVINSEIPVIVVSGAGVMSDAVEALRLGAAD
                     YLIKPLEDLAVLEHSVHRALDRSHLRLENQRYREKLEAANRELQASLHLLQEDQNAGR
                     QVQMNMLPNTPWQVDGLEFAHQIIPSLYLSGDFVDYFRVDERRVAFYLADVSGHGASS
                     AFVTVLLKFMTTRLLYEWKRNGTLPEFKPSDVLGHINRGLLNCKLGKHVTMLGGVIDE
                     ESGQLTYSIGGHLPLPVLFSEGETRYLEGRGLPVGLFQEASYHDQVMQ"
BASE COUNT          441 a          818 c          795 g          473 t
ORIGIN      
        1 gtctgcagca ccaccgggcc ctggggcgcg tgatcgatgt cgatgccgac gctggcgaac
       61 cacgccaccc gggcttcctg cacgtactcc agatagaccg tgttgttgac gtggccgtag
      121 ttgtccatgt cgccccagcg aacggggatg tgggcggtgt ggagaaggcg tttatccgac
      181 atgctggagt ccgctatgct gctgccatga acggcggcga ggtttatact gcgcggcctg
      241 ttccagagcg gccgcgggcc gccacactac tgatgccatg gagagactgc aaatgcgaat
      301 gatcgatgcg agctggctcg atcgtctggg ccgcctgtgt gcctgcgccc tgctggccgc
      361 gttgccgctg gcggcgaacg ccgaggaaga tccctgggag ggcttcaacc gcccggtctt
      421 ccgcttcaac gataccctcg acacctatgc gctgaagccc gtggcaaagg gctaccaggc
      481 ggtgaccccg cagtttctcg aagacggcgt gcacaacgtg ttccgcaaca tcggcgacgt
      541 gaccaacctg gccaacaacc tgctgcaggg caaggtccac gacgcgggcg tcgataccgg
      601 tcgcctgatc ttcaacacca ccttcggtct gctcggtttc ttcgacgtgg ccagcgagat
      661 ggggctgcag cgcagcgacg aagacttcgg ccagacgctg ggtgcctggg gtgtgggcag
      721 cggcccgtac ctggtgatcc cgctgctcgg cccgagcagc ctgcgcgacg ccccggccag
      781 gttcccggac agcttcctcg gtccgtaccc gtacatcgac cacgtgccga cccgcaacgt
      841 cacccgcgcg gtgaatgtcg tcgacacccg cgccagcctg ctgtcggcgg agaagatggt
      901 caccggcgac aagtacatct tcatccgcaa cgcctatctg cagaaccgcg agttccgcgt
      961 gcaggacggc gaggtggtgg acgacttctg attcgtccag tcgaaaagca gaaaggcggc
     1021 ctaggccgcc tttcttcgtt tcagctcatc gacagtatcg ccagacctat ggaggcgcgg
     1081 ccatcgtcca gcggcgtcac gcgcaccact tcggcctggg cgtcgagtcc cttgagttcg
     1141 ctgtgctcgg agggaatgtg caccttgacc cggtcgccca cggcgatctg gcagttggct
     1201 tccacctgca tgccggtgct ggacagatcc aggcactggg cctcgatctc ctggccggcg
     1261 tgatgaagaa tgaccggggc ttccagtcgc atgcggatga agtcacgttt ctcgctgtac
     1321 gcgcgatcgt tctggctcat ggaccctatc ctcttgtttt aagggcgctc ccccgagggg
     1381 tcttataacc cccgtcgatt tcgggtgtaa aggcgcctgg cgacaatcgg cagcggcttg
     1441 aatcgcctgg cggatgggag taccgtctgc gccttgaatc gtccgagcac aggtgttttt
     1501 cccctttcgg acggcaactc aatccttttt ccggcgtcgt ttgcctggat gacccatgca
     1561 caaacccagc gccaagctgc tgcttatcga tgatgacgag gtagtgcgag cgagcatcgc
     1621 cgcctatctg gacgacagcg gtttccaggt gttgcaggcc gggaacgggc tgcagggact
     1681 ggaagtattc gaacgcgaac agcccgacgt gatcatctgc gacctgcgca tgccgcagat
     1741 cgacggtctc gagctgatcc gccggatcaa tgtgatcaac agcgaaatcc cggtcatcgt
     1801 cgtctccggt gccggagtca tgagcgacgc ggtcgaggcc ctgcgcctcg gcgccgccga
     1861 ttacctgatc aagcccctcg aagacctggc cgtgctcgag cactcggtgc accgcgcgct
     1921 ggatcgttcg cacctgcgcc tggagaacca gcgttaccgc gagaagctgg aggcggccaa
     1981 ccgcgagctg caggccagtc tgcacctgct gcaggaagac cagaacgccg gacgccaggt
     2041 gcagatgaac atgctgccca acacgccctg gcaggtggac gggctggagt tcgcccacca
     2101 gatcattcct tcgctgtatc tctccggcga tttcgtcgac tacttccgcg tggacgagcg
     2161 ccgcgtcgcc ttctacctgg ccgacgtctc cggccacggc gcctcgtcgg ccttcgtcac
     2221 ggtgctgctc aagttcatga ccacgcgcct gctgtacgag tggaagcgca acggcacgct
     2281 gcccgaattc aagccgtccg acgtgcttgg ccacatcaac cgcggcctgc tcaactgcaa
     2341 gctcggcaag cacgtgacca tgctcggcgg ggtgatcgac gaggagagcg gccagctgac
     2401 ctacagcatc ggcggccatc ttccactccc ggtgctgttc agcgagggcg agacccgtta
     2461 cctggaaggg cgtggcctgc cggtggggct gttccaggag gcgagctacc acgatcaggt
     2521 catgcag
//
LOCUS       DATIHC010000631         2836 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_32206, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000631 DATIHC010000000
VERSION     DATIHC010000631.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2836
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32206"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..428
                     /gene="bamC"
                     /locus_tag="VLF16_10465"
     CDS             <1..428
                     /gene="bamC"
                     /locus_tag="VLF16_10465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007941449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamC"
                     /protein_id="HSX71344.1"
                     /translation="SVSLLAARSYDAPSRVSLSQDGAGNPVLSLSTDFDRAWSSVGRA
                     LELGDVRVDDINRSLGVYYVNLAEGAKKPEEEKGFISGLFSSEPTQEEIDARAERYQV
                     RLTSSAGGDVQVTVEKDINTVAPEDVSRRVLTLIQENLG"
     gene            521..1390
                     /locus_tag="VLF16_10470"
     CDS             521..1390
                     /locus_tag="VLF16_10470"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003290052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HSX71345.1"
                     /translation="MTTPTTLSLKKIYSGKVRDLYEIDEKRMLMVATDRLSAFDVILE
                     QPIPEKGKILTAISNFWFDKLKDVVPNHFTGDKVEDVVPAAELPLVEGRAVVAKRLKP
                     VAVEAIVRGYIVGSGWKEYQKSGTVCGIQLPAGLKEAAKLPQPIFTPSTKAAVGDHDE
                     NISFEQCEAIIGAELAAKVRDTAIALYSAAVEYAATRGIIIADTKFEFGLDEDGTLTL
                     MDEVLTPDSSRFWPADSYAEGSNPPSFDKQFVRDWLESTGWNKEPPAPAVPADVAQKT
                     ADKYREALTRLTQ"
     gene            1514..1603
                     /locus_tag="VLF16_10475"
     tRNA            1514..1603
                     /locus_tag="VLF16_10475"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1548..1550,aa:Ser,seq:cga)
     gene            2041..2703
                     /locus_tag="VLF16_10480"
     CDS             2041..2703
                     /locus_tag="VLF16_10480"
                     /inference="COORDINATES: protein motif:HMM:NF024852.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HSX71346.1"
                     /translation="MRLAVFGATGATGRHVVSQALAAGHEVIAIARDPGKVAPRPNLI
                     VRAGDVLDAESLRESCRGAEVVISCIGPSSSPGAGAITNNLRPGKTMSIGTVNMVAAA
                     EAAGVRRFVFQSGIGLSDGSEMTAADRWVLRLLWRPVFGAALRDKGEGERSLVGSPLD
                     WVIVRPVGLKDAAAPSGYRAGPGQRVALFSALSFADCAACLLRAASEPGWTRQIVNVG
                     PS"
BASE COUNT          524 a          936 c          921 g          455 t
ORIGIN      
        1 gctccgtatc gctgctggcc gcgcgcagtt atgacgcgcc gagccgcgtc agcctgtccc
       61 aggacggcgc cggcaatccg gtgctcagcc tcagcaccga cttcgaccgc gcctggtcga
      121 gcgtcggccg cgccctggag ctgggtgacg tgcgtgtcga cgacatcaac cgcagcctgg
      181 gcgtgtacta cgtcaacctc gccgagggcg cgaagaagcc ggaagaagag aagggcttca
      241 tcagcggcct gttcagcagc gagccgaccc aggaagagat cgacgcgcgt gccgagcgct
      301 atcaggtgcg cctgaccagc agcgccggtg gcgacgtgca ggtgaccgtg gagaaggaca
      361 tcaacaccgt agcgccggaa gacgtgtccc gccgcgtgct gaccctgatc caggaaaacc
      421 tcggctgaat ccgctccggc ctcggccgga gccgcagcga accgataggc gaacccccag
      481 ggtttcgcct gtttcgtttt gaaccaggcg gaatatcgac atgaccactc ccaccaccct
      541 gagcctgaag aagatctact ccggcaaagt ccgcgacctc tacgagatcg acgagaagcg
      601 catgctgatg gtcgcgactg atcgcctgtc ggcgttcgac gtgattctcg agcagccgat
      661 tccggagaag ggcaagatcc tcaccgccat ctccaacttc tggttcgaca agctcaagga
      721 tgtggtgccc aaccacttca ccggcgataa ggtggaggac gtggtgccgg ccgccgagct
      781 gccgctggtg gaagggcgcg ccgtggtggc caagcgactc aagccggttg ccgtcgaggc
      841 catcgtgcgc ggctacatcg tcggttccgg ctggaaggaa tatcagaaga gcggcaccgt
      901 ctgcggcatc cagctgccgg caggcctgaa ggaagcggcc aagctgccgc agccgatctt
      961 cacgccctcg accaaggccg ccgtcggcga ccatgacgag aacatcagct tcgagcagtg
     1021 cgaggccatc atcggtgccg agctggcggc caaggtgcgc gacaccgcca tcgccttgta
     1081 cagcgcggcg gtcgaatacg ccgccacccg cggcatcatc atcgccgaca ccaagttcga
     1141 gttcggcctg gacgaagacg gcaccctgac cctgatggat gaagtgctga ccccggattc
     1201 cagccgcttc tggccggccg acagctacgc cgaaggcagc aacccgccga gcttcgacaa
     1261 gcagttcgtg cgcgactggc tggagtccac cggctggaac aaagagccgc cggccccggc
     1321 cgtaccggcc gacgtcgcgc agaagaccgc cgataagtac cgcgaggcgc taacccgtct
     1381 gactcagtga cgcgcgccat gcgaaggaag gggagctgcg gctccccttt tcgttgccgc
     1441 tgcgcaagca cctgatcgca cacgaaaaat cgctggacta acgaccctca actggtatca
     1501 tgcgcaccgc tttgggaaga tgccggagtg gtcgaacggg acggattcga aatccgttgt
     1561 gtcagcaatg gcacctaggg ttcaaatccc tatcttcccg ccatacaaga aagccccgtg
     1621 attctttgga tcacggggct ttttctttgc cttgtcgggg gcagaaaaat gcccagggca
     1681 aattggtcat catccaggcg acttcaggtc gctcgagaca agctcctctc atctcctgac
     1741 tcctttcgga acgtgggcct gcaccgtgag aggcggccac ccgcccatga agattccact
     1801 gtaccgagcg ctgagcctag tcggtgagcg cctgcggttt cccgcgcgct cgttgcgcaa
     1861 tggatggagt ccgatctagt gattgatcgt cacgtgacgg ataccgagcg caaaagcgac
     1921 acgaactgct gtagggtttg cgaactgttg acacgaaggt cgacctcgta ccaggcgagt
     1981 cggtcgctcc gctcaggcgg agcatcagcc tcacgcgaat aacctgtatt ggagcaacac
     2041 atgagactgg ccgtattcgg cgcaacgggc gcgacggggc gtcacgtggt gagccaggcg
     2101 ctcgccgccg gtcacgaggt catcgccatc gcgcgtgacc cgggcaaggt ggcgccgcgc
     2161 ccgaacctga tcgttcgcgc cggcgatgtg ctcgatgccg agagcctgcg cgagagctgc
     2221 cggggcgcgg aggtggtgat ctcctgcatc gggcccagca gcagccccgg cgccggcgcg
     2281 atcacgaaca acctgcgccc cggcaagacc atgtccatcg gcaccgtcaa catggtggcc
     2341 gccgccgagg ccgccggcgt gcgccgcttc gtcttccaga gtggcatcgg gctcagcgac
     2401 ggcagcgaga tgacggccgc cgatcgctgg gttctgcgtc tgctgtggcg gccggtgttt
     2461 ggcgcggccc ttcgcgacaa gggcgagggc gagcgaagcc tcgtcggcag tcccctcgac
     2521 tgggtgatcg tgcgccccgt cggcctgaag gacgccgcgg ctcccagcgg ttaccgggcc
     2581 ggccccggcc agcgcgtcgc cctgttctcg gcgctgtcct tcgccgactg cgccgcgtgt
     2641 ttgctgcgcg ccgcgagcga gcccggctgg acgcggcaga tcgtcaacgt cgggccgtcc
     2701 tgacacccat gcaccggcgg gcgctcgatc cgcggcctgc gtagaacgcc ctaggccgcc
     2761 agcacttcct gcagataggc gagaaacgcg cggatgcgac tggactcccg caggctaggc
     2821 ggatacagcg cgtgga
//
LOCUS       DATIHC010000632         1852 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21800, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000632 DATIHC010000000
VERSION     DATIHC010000632.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1852
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21800"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            281..484
                     /locus_tag="VLF16_10485"
     CDS             281..484
                     /locus_tag="VLF16_10485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003444954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbtH family NRPS accessory protein"
                     /protein_id="HSX71347.1"
                     /translation="MSLDNPQTIFLVVVNDEQQYAIWPAYKAVPAGWKEDGVRGDKAT
                     CLAHIASVWTDMRPRSLREAMDA"
     gene            484..1209
                     /locus_tag="VLF16_10490"
     CDS             484..1209
                     /locus_tag="VLF16_10490"
                     /inference="COORDINATES: protein motif:HMM:NF013166.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HSX71348.1"
                     /translation="MQLFCLAHAGASAMPYARWRKRLPRWLEVCPLELPGRGAREGEP
                     LCQDLPALLADLRQAWSRECNGPYLLWGHSLGAMLAFELAQALIGEGHEAPLALFASA
                     SRAPSRRLQAPRMTTRSDGELFAGLDGFARLPRELLADPLFRRELLPVLRSDFALAES
                     YRYQRRAPLPCALHVLGARRDCLSEDDLRAWRRETCGTFTLEWLDGDHAYLRPQEEEL
                     LSLIEFHASRLLRREAAGVPLGA"
     gene            1232..>1852
                     /locus_tag="VLF16_10495"
     CDS             1232..>1852
                     /locus_tag="VLF16_10495"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HSX71349.1"
                     /translation="MNAPVPSIIALQWAPLSFAQQRLWFFSRLESGSSAYNIGGLLRF
                     DGALDLDSLRHGLDQVYSRHAALRTVFREQDGLAQQAVLPAGPMPLEIIDLSQGSERV
                     EALARAFIEADYDLTRGPLVRCALYRLGENSHALAVGMHHIISDAWSVRVMVEEMAEF
                     YRARQQNRQPFMTPQPVQYSEYAVGQREWLDSEAGAQQMAFWRERLG"
BASE COUNT          291 a          641 c          612 g          308 t
ORIGIN      
        1 gtcctggcca tcacccatga cgaccactac ttcgaccagg ccgaccgtct gctgaagatg
       61 gatggcggtc gcctcagcga actcaccggc gaagcccgcg accgcgccac ccaggacgcg
      121 gtgcgcgaga tcggcggctc aatcccggcc tgaacgcatg tgtctcggcc ctcagcaatg
      181 ggggtgagag cactgtcatg tccgcgaaat cgaattaagt gaaaattatt cgcatctttg
      241 tgcgtcttta aaacgtgcca ctttgaacga gggatacccc atgagcctgg acaacccgca
      301 aaccatcttc ctggtcgtgg tcaacgacga gcagcagtac gccatctggc cggcctacaa
      361 ggccgtgccg gccggctgga aggaagacgg cgtgcgcggc gacaaggcga cctgtctggc
      421 gcacatcgcc agcgtctgga ccgacatgcg tccgcgcagc ctgcgcgagg ccatggacgc
      481 ctgatgcagc tgttctgcct ggctcatgcc ggcgccagcg ccatgcccta cgcacgctgg
      541 cgcaagcgcc tgccacgttg gctggaagtc tgcccgctgg agttgccagg tcgcggcgcc
      601 cgcgagggtg agccgctgtg ccaggacctg ccggcgctgc tggccgacct gaggcaggcc
      661 tggtcgcgcg aatgcaacgg tccgtacctg ctgtgggggc acagcctggg cgccatgctc
      721 gccttcgagc tggcccaggc gctgatcggc gaggggcatg aggcgccgct ggcgttgttc
      781 gcctcggcct cgcgggcgcc ctcgcgacgc ctgcaggcgc cgcgcatgac tacacgcagc
      841 gatggcgaac tgttcgccgg cctcgatggc ttcgcccgct tgccacgcga gctgctggcc
      901 gacccgctgt tccgtcgcga actgctgccg gtactgcgca gcgactttgc cctggccgag
      961 agctaccgct accagcgccg tgcgccattg ccctgcgccc tgcatgtgct gggcgcgcgg
     1021 cgcgactgcc tgagcgagga cgacctgcgc gcctggcgcc gcgaaacctg cggcaccttc
     1081 accctggaat ggctggatgg cgatcacgcc tacctgcgcc cccaggaaga agaactgctg
     1141 tccctgatcg aattccatgc ctcgcgcctg ctgcggcgcg aggcggctgg cgtgccactg
     1201 ggcgcctagc cactctttgc gaggttctgc catgaacgca cctgtcccga gcatcattgc
     1261 cctgcaatgg gcgccgctgt ccttcgccca gcagcggctg tggttcttca gccgcctgga
     1321 aagcggcagc agcgcctaca acatcggcgg cctgctgcgt ttcgacgggg cgctggacct
     1381 ggacagcctg cgtcatggcc tggaccaggt gtattcacgc cacgcggcgc tgcgcaccgt
     1441 gttccgtgag caggatggcc tggcccagca ggccgtgctg ccggccggcc cgatgccgct
     1501 ggagatcatc gacctgtcgc agggtagcga acgcgtcgag gcattggcgc gcgcctttat
     1561 cgaggccgac tacgacctga cccgtggccc gctggtgcgc tgcgccttgt atcggctcgg
     1621 cgaaaacagc cacgccctgg ccgtgggcat gcaccacatc atctccgacg cctggtcggt
     1681 gcgggtgatg gtcgaggaga tggccgagtt ctatcgtgcc cgccagcaga accgccagcc
     1741 gttcatgacc ccgcaaccgg tgcagtacag cgagtacgcc gtcggccagc gcgagtggct
     1801 ggacagcgag gccggcgccc agcaaatggc cttctggcgc gaacgcctgg gc
//
LOCUS       DATIHC010000633         1828 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_20371, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000633 DATIHC010000000
VERSION     DATIHC010000633.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1828)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1828)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1828
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20371"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..491)
                     /locus_tag="VLF16_10500"
     CDS             complement(<1..491)
                     /locus_tag="VLF16_10500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004373080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX71350.1"
                     /translation="MNLHHLKVFLAVAQAGSISAGAARLHISQPAVTREIRELEANLG
                     LPLFDRHPRGVQPTEGGQRLLQFAERIFALEQAAERDLRDLAGLGHGELALGASATLG
                     AYWLPPLLNRFRADHPGVFVSLQVSNTQEVLQQLDDAVISLGFVEGPFPATDYQHRQL
                     ARDR"
     gene            598..1746
                     /locus_tag="VLF16_10505"
     CDS             598..1746
                     /locus_tag="VLF16_10505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004373077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDT family transporter"
                     /protein_id="HSX71351.1"
                     /translation="MPRPFTRLPEPWAFVRHFTPNWFAMTMGTGVLALVVAHLPWRLP
                     GQMALAEALWLFGVALFTLFGLLFLARVLVFRETIWPMLLHPVQSMFLGAIPMGLAML
                     IGGLVQFGPARWGAEVYQLAHALWWLDAAMALGSALLVPYLMFTRQSHALEKMTAVWL
                     LPIVAPEVAAGAAGGLAPHLDPASARLMLSVGFVLWGMSLSLAFSLITLVLLRLALHK
                     LPDTDFAATSWLPLGPLATGCLGLLTMGQDAPAAFAGTALAGAADVASGLGLVGGLAL
                     WGAGLWWLVTAIFFTRHYIRDNMPFNLGWWGFTFPLGVFTLATFELARLTDLRFFALV
                     GLVLAVQLAAVWLLVLQRTLRGVWHGELFEAPCLEGPQSRAHGVFSAD"
BASE COUNT          212 a          608 c          660 g          348 t
ORIGIN      
        1 cggtcgcggg ccagttggcg gtgctgatag tcggtggcgg ggaaggggcc ctcgacgaag
       61 ccgaggctga tcaccgcgtc gtcgagctgc tgcagcactt cctgggtgtt gctcacctgc
      121 aggctgacga agacgccggg atggtcggcg cggaagcgat tgagcagcgg cggcagccaa
      181 taggcgccga gggtggcgct ggcgcctagc gccagctcgc catggccgag gccggccagg
      241 tcgcgcaagt cacgctcggc ggcctgttcc agggcgaaga tgcgttcggc gaactgcagc
      301 aggcgctggc cgccctcggt cggctgcacg ccgcgggggt ggcgatcgaa caggggcagt
      361 ccgaggttgg cctccagttc gcggatctcg cgggtcaccg ccggctggct gatgtgcagg
      421 cgcgcggcgc cggcgctgat gctgccggcc tgggcgaccg ccaggaagac cttgaggtga
      481 tgcagattca tggcattcgc ataaataaaa agtatgcaga tcatgctgaa tatgtatttt
      541 taatatggca agcggctctc tagccttggc gcctcgttta tctccttcgg agcccccatg
      601 ccgcgcccct tcacccgcct gcccgagccc tgggccttcg ttcgccactt cacgcccaac
      661 tggttcgcca tgaccatggg caccggcgtg ctcgccctgg tggtcgccca tctgccctgg
      721 cgcctgcccg ggcaaatggc gctggccgag gcgctgtggc tgttcggcgt ggcgctgttc
      781 accctgttcg gcctgctgtt cctggcgcgg gtgctggtgt tccgcgagac gatctggccg
      841 atgctgctgc acccggtgca gtcgatgttc ctcggcgcga ttcccatggg cctggccatg
      901 ctgatcggcg gcctggtgca gttcggcccg gcgcgctggg gggcggaggt ttatcagctg
      961 gcccatgcgc tctggtggct ggacgcggcg atggcgctgg gcagcgcgct gctggtgcct
     1021 tacctgatgt tcacccggca gagccacgcg ctggagaaga tgaccgcggt ctggctgctg
     1081 ccgatcgtcg cgcccgaggt ggcggccggc gcggccggcg gcctggcgcc gcacctggat
     1141 ccggcctcgg cgcggctgat gctgtcggtc ggcttcgtgc tctggggcat gtcgctgtcc
     1201 ctggccttct cgctgatcac cctggtgctg ctgcgcctgg ccctgcacaa gctgccggac
     1261 accgacttcg ccgccaccag ctggctgccg ctggggccgc tggccaccgg ctgcctgggc
     1321 ctgctgacca tgggccagga cgcaccggcc gccttcgccg gcaccgcgct ggctggtgcc
     1381 gccgacgtgg ccagcggcct cggcctggtc ggcggcctgg cgctgtgggg tgcggggctg
     1441 tggtggctgg tcacggcgat cttcttcacc cgtcactaca tccgcgacaa catgccgttc
     1501 aacctcggct ggtggggctt caccttcccg ctgggcgtgt tcaccctggc caccttcgag
     1561 ctggcgcggc tcaccgacct gcgcttcttc gccctggtcg ggctggtgct ggcggtgcaa
     1621 ctggcggccg tctggctgct ggtgctgcag cgcaccctgc gcggggtgtg gcatggcgag
     1681 ctgttcgagg cgccctgtct ggaggggccg cagagccgtg cgcatggggt gttcagcgcc
     1741 gattgagggc gttcgaccat ctgtcattgc ccctggaggg ccggctgggc gaaaatacgc
     1801 gcctttttta ccgtgacccg tcccccca
//
LOCUS       DATIHC010000634         4263 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43734, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000634 DATIHC010000000
VERSION     DATIHC010000634.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4263
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43734"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..642
                     /locus_tag="VLF16_10510"
     CDS             <1..642
                     /locus_tag="VLF16_10510"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HSX71352.1"
                     /translation="ERRTRPLPIHRHDELGQLARSFAQMQEEILGQLDELNQRRDALE
                     HLARHDPLTGLPNRRVFFERLDHALASARRSAKPLAVLFVDLDHFKELNDSLGHGVGD
                     RVLQAVANLLRSATRESDTVARLGGDEFVILIEQLDDPQQVLAVLHKLHERFQLPMLV
                     DRHEVQVQASMGVSLFPRDGDDIESLLQQADRAMYAAKNAGRNTYNYEAQDPR"
     gene            735..1736
                     /locus_tag="VLF16_10515"
     CDS             735..1736
                     /locus_tag="VLF16_10515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017675454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX71353.1"
                     /translation="MLPLLVCDDSTMARKQLIRALPPEWPVSITQASHGEEAMTAIRQ
                     GLGQVVLLDLTMPVMDGYQVLAQVREEGHACRILVVSGDIQDEARRRVAELGALDFIR
                     KPATPEELRETLERLGLFDHRAAAEAQPSRTEADFKVGFRDALREVSNVAMGRAAALL
                     AEELGVFVQLPVPAVNLFEASELHMALADANRGERLSAVCQGFVGEAIAGEALLLFHD
                     SEVADIAHLLGLRPGGDEATSEMLLDLASIIIGACLAGIAEQLDIRFSQGHPQLLGQH
                     ARSIDELIHFNGARWRKTLAVEISYALEDRAVRFDLLLLFTEASVPRLTAKIQYLME"
     gene            1740..2183
                     /locus_tag="VLF16_10520"
     CDS             1740..2183
                     /locus_tag="VLF16_10520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004420263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HSX71354.1"
                     /translation="MAGQAQIDMRELHWLLDIVQCLDVGVLVMDRNFRIEVWNSFMEN
                     HSGLGADQVQGRSLFELFPEIDRVWLERKVGTVLRLGTRAFSLWQQRPYLLRFETYRP
                     ITGQADFMYQNLTIMPLAAAGREVEHVCLMIYDATEAAEAQLREG"
     gene            complement(2197..3528)
                     /locus_tag="VLF16_10525"
     CDS             complement(2197..3528)
                     /locus_tag="VLF16_10525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSX71355.1"
                     /translation="MSFEPLGLIEPLLRTLEALDYREPTPVQKQAIPAVLKGRDVLAA
                     AQTGTGKTAGFALPLLQKLTMEGSQVAANSVRALVLVPTRELAEQVAQAVQQYAQNLP
                     LRTYSVYGGVSINPQMMKLRKGIDLLVATPGRLLDLYRQNAVRFDQLQALVLDEADRM
                     LDLGFAKELDELFSALPRKRQTLLFSATFSDAIRLMAKELLRDPLSIEVSPRNAAAKS
                     VKQWLVTVDKKRKSELLLHLYRERGWDQLLVFAKTRKGVDELEQLLLAEGISADSIHG
                     DKPQPSRLRALQRFKAGEVRVLAATDVAARGLDISELPRVVNLDLPIVAEDYVHRIGR
                     TGRAGATGEAVSLVCADEVELLAAIETLIGQIIRREDEPGFVPDHRVPQTAPGGAVLK
                     KPKKPKVKVVPGAGKGKIHMGNWFEADDDKPKAKAVRAVPKFGEKPRPKKK"
     gene            complement(3637..>4263)
                     /locus_tag="VLF16_10530"
     CDS             complement(3637..>4263)
                     /locus_tag="VLF16_10530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004424947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HSX71356.1"
                     /translation="LKLKQLFPTFEPMQTSLGALNGDASLSGTGNSVAALLGSANGEL
                     KMLINDGAVSRSLLEIAGLNVGNYLVGKLFGDDEVTINCAAADLGIKQGLMSTRLFVI
                     DTENAVIKVDGSANFAREQLDFEIVPAAKGLRIFSLRSPLYVRGTFKEPNAGVQATPL
                     ALRGVGLLALGVAVAPAAGLLALVAPSEGEEPSQCAPLLQQMQKGGKG"
BASE COUNT          653 a         1497 c         1431 g          682 t
ORIGIN      
        1 gaacgccgca cccgtccctt gccgatccac cgccacgacg aactgggcca gctggcgcgc
       61 agcttcgcgc agatgcagga ggaaatcctc ggccagctgg acgagctcaa ccagcgccgc
      121 gacgccctcg aacacctggc acgccacgac ccgctgaccg gcctgcccaa ccgccgcgtg
      181 ttcttcgagc gcctcgacca tgccctggcc agcgcccggc gcagcgccaa gccgctggcc
      241 gtgctgttcg tcgacctcga ccatttcaag gagctcaacg acagcctcgg ccacggcgtg
      301 ggcgaccggg tgctgcaggc ggtggccaac ctgctgcgct cggccacccg cgagagcgac
      361 acggtggcgc gcctgggcgg cgacgagttc gtcatcctca tcgagcagct ggacgacccg
      421 cagcaggtgc tggcggtgct gcacaagctg cacgagcgct tccagctgcc catgctcgtc
      481 gacaggcacg aggtgcaggt ccaggccagc atgggcgtca gcctgttccc gcgcgacggc
      541 gacgacatcg agtcgctgct gcagcaggcc gaccgggcca tgtacgcggc caagaacgcc
      601 gggcgcaaca cctataacta cgaggcccag gacccgcgct gacacgccat tcggcaggcc
      661 cggcgcaacg tatcgcgggc ctgccgacgc gacgtctatg cttgcgatat cgactctctc
      721 ccggggtacc ccacgtgctg ccactgctgg tctgcgatga ttccaccatg gcgcgcaagc
      781 agctgatccg cgccctgccg ccggaatggc cggtgtccat cacccaggcc agccacggcg
      841 aggaggccat gacggcgatc cgccagggcc tgggccaggt ggtgctgctg gacctgacca
      901 tgccggtgat ggacggctac caggtgctcg cccaggtccg cgaggaaggc cacgcctgcc
      961 gcattctggt ggtgtccggc gacatccagg acgaggcccg gcgccgggtc gccgaactcg
     1021 gcgcattgga cttcatccgc aagccggcca cgcccgagga actgcgcgag accctggagc
     1081 gcctcggcct gttcgaccac cgagccgccg ccgaggccca accgtcgcgg accgaggcgg
     1141 acttcaaggt cggtttccgc gatgccctgc gcgaagtcag caacgtcgcc atgggccgcg
     1201 ccgccgcgct gctggccgag gagctgggcg tgttcgtgca gttgccggtg ccggcggtga
     1261 acctgttcga ggccagcgag ctgcacatgg ccctggccga cgccaaccgc ggcgagcgct
     1321 tgagcgcggt atgccagggc ttcgtcggcg aggccatcgc cggcgaggcg ctgctgctgt
     1381 tccacgattc ggaagtggcg gacatcgccc acctgctcgg cctgcgcccg ggcggcgacg
     1441 aggcgacctc ggagatgttg ctggacctgg cgagcatcat catcggtgcc tgcctcgccg
     1501 gcatcgccga gcagctcgac atccgcttct cccagggcca cccgcagctg ctcggccagc
     1561 atgcgcgcag catcgacgag ctgatccatt tcaacggcgc gcgctggcgc aagaccctgg
     1621 cagtggagat cagctacgcc ctggaggacc gcgccgtgcg cttcgacctg ttactgctgt
     1681 tcaccgaggc ctccgtgccg cggctgaccg ccaagatcca gtacctgatg gagtagacca
     1741 tggccggcca agcccagatc gacatgcgcg agctgcactg gctgctggac atcgtccagt
     1801 gcctggacgt gggcgtgctg gtgatggacc gcaacttccg catcgaggtg tggaacagct
     1861 tcatggagaa ccattccggc ctcggtgccg accaggtgca gggccgcagc ctgttcgagc
     1921 tgtttccgga gatcgaccgg gtctggctgg aacgcaaggt cggcacggtg ctgcgcctgg
     1981 gcactcgcgc gttcagcctg tggcagcagc gcccctacct gctgcgcttc gagacctacc
     2041 ggcccatcac cggccaggcg gacttcatgt accagaacct caccatcatg ccgctggccg
     2101 ccgccgggcg tgaggtggaa cacgtgtgcc tgatgatcta cgacgccacc gaggccgccg
     2161 aggcgcagct gcgcgaaggc tgagcccgcc cggcgctcac ttcttcttcg gccgcggctt
     2221 ctcgccgaac ttgggcaccg cgcgcacggc cttggccttg ggtttgtcgt cgtcggcctc
     2281 aaaccagttg cccatgtgga tcttgccctt gccggcgccg ggaaccacct tgaccttggg
     2341 cttcttcggc ttcttcagta ccgcgccgcc gggggcggtc tgcggcaccc ggtgatccgg
     2401 cacaaagccc ggttcgtcct cgcggcggat gatctggccg atcagcgtct cgatggccgc
     2461 cagcaactcg acctcgtcgg cgcaaaccag cgacaccgcc tcaccggtgg cgccggcacg
     2521 gccggtacgg ccgatgcggt gcacgtagtc ttcggcgacg atcggcaggt cgaggttgac
     2581 cacccgtggc agctcgctga tgtccaggcc ccgcgcggcc acgtcggtgg cggccagcac
     2641 gcggacttcg ccagccttga agcgctgcaa ggcgcgcagg cgcgatggct gtggcttgtc
     2701 gccgtggatc gagtcggcag aaatgccttc ggccagcagc agctgctcca gctcgtcgac
     2761 gcccttgcgc gtcttggcga ataccagcag ctggtcccag ccgcgttcgc ggtacaggtg
     2821 cagcagcagc tcgctcttgc gcttcttgtc caccgtcacc agccactgct tgacgctctt
     2881 ggccgccgca ttgcgcgggc tgacctcgat ggacagcggg tcgcgcagca gctccttggc
     2941 catcaggcgg atggcatcgg agaaggtggc ggagaacagc agggtctggc gcttgcgcgg
     3001 cagcgcgctg aacagctcgt ccagctcctt ggcgaaaccc aggtcgagca tgcggtcggc
     3061 ctcgtccagc accagcgcct gcagctgatc gaagcgcacc gcgttctgcc ggtacaggtc
     3121 gagcaggcgg ccgggggtgg ccaccagcag gtcgatgccc ttgcgcagct tcatcatctg
     3181 cggattgatg ctgaccccgc cgtacaccga gtaggtgcgc agcggcaggt tctgcgcgta
     3241 ctgttgcact gcctgcgcca cctgctcggc cagctcgcgc gtcggcacca gcaccagcgc
     3301 acgcaccgag ttggccgcta cctgcgagcc ttccatggtc agcttctgca gcagcggcag
     3361 ggcgaaaccg gcggtcttgc cggtgccggt ctgcgccgcg gcgagcacgt cgcgcccctt
     3421 gagcacggcg ggaatggcct gcttctgcac cggggtgggc tcgcggtagt cgagcgcctc
     3481 cagggtacgc agcaggggtt cgatcaggcc gaggggttcg aaggacatgg cggagcaacc
     3541 ggcaaacagt ggacgtgcag tttacccgct ccggcccacc gctcgtaggg tgcgccgtgc
     3601 gcaccctgct ttgtgcaaca ggtgcacgcg ccgcccctag cccttgccgc ctttctgcat
     3661 ctgctgcagc agcggcgcgc actggcttgg ctcctcgcct tcgctgggtg ccaccagcgc
     3721 cagcaggccg gcggccgggg ctacggccac gcccagtgcc agcaggccga cgccgcgcag
     3781 ggccagcggg gtggcctgca cgccggcgtt gggctccttg aacgtgccgc gcacgtagag
     3841 cggcgagcgc agggagaaga tgcgcagccc cttggcggcc ggcacgatct cgaaatcgag
     3901 ctgctcgcgg gcgaagttgg ccgagccatc gaccttgatc accgcgttct cggtatcgat
     3961 cacgaacagc cgggtgctca tgagcccctg tttgatgccc aggtcggcgg ccgcacagtt
     4021 gatggtgacc tcgtcgtcgc cgaacagctt gccgaccaga taattgccca cgttgaggcc
     4081 ggcgatctcg agcaggctgc ggctcaccgc gccatcgttg atcagcatct tcagctcgcc
     4141 gttggcgctg cccagcaagg ccgccacgga attgccggtg ccgctcaggc tggcgtcgcc
     4201 gttgagcgcg ccgaggctgg tctgcatcgg ctcgaaggtc gggaacagct gcttgagctt
     4261 gag
//
LOCUS       DATIHC010000635         2056 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43737, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000635 DATIHC010000000
VERSION     DATIHC010000635.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43737"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..499)
                     /gene="miaA"
                     /locus_tag="VLF16_10535"
     CDS             complement(<1..499)
                     /gene="miaA"
                     /locus_tag="VLF16_10535"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003246511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HSX71357.1"
                     /translation="MTERLPPAIFLMGPTASGKTDLALALADALPCELVSVDSALIYR
                     GMDIGTAKPDKATLARYPHRLVDIRDPAESYSAAEFRADALAAMAEITARGRIPLLVG
                     GTMLYYKALLEGLADMPGADPVVRAELEAWAAAEGWEVLHRELARLDPESAARIHPND
                     PQRLIR"
     gene            complement(646..>2056)
                     /gene="mutL"
                     /locus_tag="VLF16_10540"
     CDS             complement(646..>2056)
                     /gene="mutL"
                     /locus_tag="VLF16_10540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HSX71358.1"
                     /translation="FNTPARRKFLRAEKTEFDHLQEVIKRLALARFDVAFHLRHNGKT
                     VFALHEAPDEISRARRVASVCGPAFLEQALPIEVERSGLRLWGWVGLPTFSRSQADLQ
                     YFYVNGRMVRDKLVAHAVRQAYRDVLFNGRHPTLVLFLEIDAGVVDVNVHPTKHEVRF
                     RDSRMVHDFLYGTLHRALGEVRPEDQLAAPAAAGQIVRPSGQAAGEFGPQGEIGLAAT
                     VLERPAVESSVWRSPGAGYQSPRPQPAIPQAEAQGAYREYFAPLAEPSSALPQPQGDI
                     PPLGYALAQLKGVYILAENAQGMVLVDMHAAHERITYERLKTAMACEGLRGQPLLVPE
                     SIALSQREADCAEEHGQWFQRLGFELQRLGEESLAIRQIPALLKQAEATQLVRDVLAD
                     LLEYGTSDRIQAHLNELLATMACHGAVRANRRLTLPEMNALLRDMEHTERSGQCNHGR
                     PTWTQLGMDDLDKLFLRGR"
BASE COUNT          332 a          699 c          715 g          310 t
ORIGIN      
        1 cccggatcag gcgctggggg tcattgggat gaatgcgcgc cgccgactcc ggatcgagtc
       61 gcgcgagctc ccggtgcagc acctcccagc cctcagccgc ggcccaggcc tccagctcgg
      121 cacgaacgac aggatcggcg cccggcatgt ccgccaggcc ttcgagcaac gccttgtaat
      181 aaagcatggt gccgcccacc agcagcggaa tgcgcccgcg cgccgtgatt tcggccatgg
      241 cggcgagggc gtcggcgcgg aattccgccg ccgaatagct ctcggccgga tcgcgaatgt
      301 ccaccagccg gtgcggatag cgcgccagcg tggctttgtc aggcttggcc gtgccgatat
      361 ccatgccacg gtagatcagc gccgaatcga cgctgaccag ctcgcacggc agcgcatcgg
      421 ccagggctag cgccaggtcg gtcttgccgg aggcagtggg gcccatcagg aagatggcgg
      481 ggggcaggcg ctcggtcata actctggagt cgctcgctga gcgtcgcaag tgacgctcga
      541 gcgagacatg aatcggtgag ggacgcgcag tttacccgcc gcacacgagc aatccgaacg
      601 gattttcaac gtgacgcgag cacgcgcagc cgcacgaacg atgcctcagc gaccgcgcag
      661 gaacagcttg tccagatcgt ccatgcccaa ctgggtccag gtcggccgac cgtggttgca
      721 ctgcccgctg cgctcggtgt gctccatgtc gcgcagcagg gcgttcatct ccggcagggt
      781 caggcgccgg ttggcgcgca ccgcgccgtg gcaggccatg gtcgccagca actcgttgag
      841 atgggcctgg atgcggtcgc tggtgccgta ctccagcagg tcggcgagca cgtcgcgcac
      901 cagttgggtc gcctcggcct gcttgagcag cgcgggaatc tgacggatcg ccaggctctc
      961 ctcgcccaaa cgctgcagct cgaagcccag tcgctggaac cactggccgt gctcttcggc
     1021 gcaatcggcc tcgcgctggc tcagggcgat ggattccggc accagcagcg gctggccgcg
     1081 caggccctcg caggccatgg cggtcttcag ccgctcatag gtgatgcgct cgtgagccgc
     1141 gtgcatgtcc accagcacca tgccctgggc gttctcggcg aggatgtaga cgcccttgag
     1201 ctgagccagg gcgtagccca gcggcgggat atcgccctgg ggctgcggca aggcggacga
     1261 cggctcggcc agcggcgcga agtactcgcg ataagcaccc tgggcctccg cctgcgggat
     1321 ggccggctgc ggccgcggcg actggtaacc ggcgcccggc gagcgccaga cggacgactc
     1381 gaccgcgggc cgctccagca cggtggcggc cagaccgatc tcgccctgtg ggccgaactc
     1441 gccggccgcc tgaccactcg gacgcacgat ctgccccgcc gccgccggag ccgccaactg
     1501 gtcctctggc cgtacctcgc ccagcgcccg gtgtagggtg ccatagagga agtcgtggac
     1561 catgcggctg tcgcggaagc gcacctcatg cttggtcggg tgcacattga cgtcgactac
     1621 ccccgcatcg atctcgagga acagcacgag ggtcggatga cggccattga acagcacgtc
     1681 gcggtaggcc tggcgcacgg cgtgggcgac cagtttgtcg cgcaccatgc ggccattgac
     1741 gtagaaatac tgcaggtctg cctggctgcg cgagaatgtc ggcaggccga cccagcccca
     1801 caggcgcagg ccgctgcgct ccacctcgat gggcagcgcc tgctcgagga aggccgggcc
     1861 gcagacgctg gccacccggc gggcgcgact gatctcgtcc ggcgcctcgt gcagggcgaa
     1921 taccgtcttg ccgttgtggc gcaggtggaa ggcgacatcg aagcgggcca gggccaggcg
     1981 cttgatcacc tcctgcaggt gatcgaactc ggtcttctcg gcgcgcagga acttgcgccg
     2041 cgccggggta ttgaag
//
LOCUS       DATIHC010000636         1563 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34408, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000636 DATIHC010000000
VERSION     DATIHC010000636.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1563
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34408"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..618)
                     /locus_tag="VLF16_10545"
     CDS             complement(<1..618)
                     /locus_tag="VLF16_10545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017677926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HSX71359.1"
                     /translation="MDSLTQAVLGASLQGALLGRWQGRRALLYGAMLGTLPDLDVVID
                     YGDAVADMTYHRGFSHSLLVLSLLAVAITLLARWLRPDPGYSRRRLFFAVWLVLITHP
                     LLDAFTSYGTQLFWPLETPPIAWSSIFIIDPLYTVPLLVAVVVGLVRGLRDRPQWLAI
                     SALCLSSVYLASTLAGKWMAEQRVQDVLAERGIQSDVLFSTPTPFN"
     gene            753..>1563
                     /locus_tag="VLF16_10550"
     CDS             753..>1563
                     /locus_tag="VLF16_10550"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017677922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HSX71360.1"
                     /translation="MHPRVLEVTERLIERSRATRARYLAMIAAAADQGPQRGKLQCAN
                     FAHGVAGCSGADKQTLRLPNAANVAIVTAYNDMLSAHQPYEDYPQRIKTALHEVGSVG
                     QVAGGVPAMCDGVTQGEPGMEIGIASRETIAMSTAVALSHNMFDAALCLGICDKIVPG
                     LLVGALRFGHLPTIFVPAGPMPSGLSNKEKAEVRERYAEGKASREELLASEMAAYHSP
                     GTCTFYGTANTNQMLMEVMGLHLPGASFVNPGTPLRDALTREAAQQVVRLTR"
BASE COUNT          278 a          546 c          536 g          203 t
ORIGIN      
        1 gttgaacggc gtcggcgtgc tgaacagcac gtcggactgg atgccgcgct cggccagcac
       61 gtcctgcacg cgctgttcgg ccatccactt gccggccagg gtgctggcca ggtacacgct
      121 ggacaggcac agcgccgaga tcgccagcca ctgcgggcgg tcgcgcaggc cgcggaccag
      181 gccgaccacc accgccacca gcagcggcac ggtgtacagc gggtcgatga tgaagatcga
      241 cgaccaggcg atcggcggcg tctccagcgg ccagaacagc tgggtgccgt agctggtgaa
      301 ggcatcgagc agcgggtggg tgatcaacac cagccacacg gcgaagaaca gccgtcgcct
      361 cgagtagccc ggatcgggcc gcagccagcg tgccagcagg gtgatcgcca ccgccagcag
      421 gctgagcacc agcagcgagt ggctgaagcc gcggtggtag gtcatgtcgg ccacggcgtc
      481 gccgtaatcg atcaccacgt cgaggtcggg cagggtgccg agcatggcgc catagagcag
      541 cgcgcggcgg ccttgccagc ggccgagcag ggcgccctga aggctggcgc cgagtaccgc
      601 ctgggtgagt gaatccatga tgcgtccttg agaaagccag gcggctacgt tagcgccggt
      661 gcggtatggg cggcagcccg gaattccgac gaaagatttc aaccgcctgc ggggttacag
      721 tgtcgcaata gcaaagcctg aggagccgac ccatgcatcc ccgcgttctc gaagtcaccg
      781 agcgcctgat cgagcgcagc cgcgccaccc gcgcgcgcta cctggcgatg atcgccgcgg
      841 ccgccgacca gggcccgcag cgcggcaagc tgcagtgcgc caacttcgcc cacggcgtgg
      901 ccggttgcag cggcgcggac aagcagaccc tgcgcctgcc aaacgcggcc aatgtggcca
      961 tcgtcaccgc ctacaacgac atgctctccg cgcaccagcc ctacgaggat tacccgcagc
     1021 ggatcaagac ggcgctgcac gaggtcggct cggtcggcca ggtggccggc ggcgtgccgg
     1081 ccatgtgcga cggcgtgacc cagggcgagc cgggcatgga gatcggcatc gccagccgcg
     1141 agaccatcgc catgagcacc gccgtggcgc tgtcgcacaa catgttcgac gccgcgctgt
     1201 gcctgggcat ctgcgacaag atcgtccccg gcctgctggt cggcgccctg cggttcggcc
     1261 acctaccgac gatcttcgtg ccggccgggc cgatgccctc gggcctctcc aacaaggaaa
     1321 aggccgaggt gcgcgagcgc tacgccgagg gcaaggccag ccgcgaggaa ctgctcgcct
     1381 cggaaatggc cgcctaccac agccccggca cctgcacttt ctacggcacg gccaacacca
     1441 accagatgct gatggaggtg atgggcctgc acctgcccgg cgcctccttc gtcaaccccg
     1501 gcacgccgct gcgtgacgca ctgacccgcg aggcggcgca gcaggtggtg cgtctgaccc
     1561 gcc
//
LOCUS       DATIHC010000637         4025 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_6538, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000637 DATIHC010000000
VERSION     DATIHC010000637.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4025
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6538"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            124..1092
                     /locus_tag="VLF16_10555"
     CDS             124..1092
                     /locus_tag="VLF16_10555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003460056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HSX71361.1"
                     /translation="MQSSSELFPVALVSAELRGDLSEDVYRLKPGNAPDFSVELALTR
                     LGLAGQQGRGVPVILLHGSFSNRRFWYSPRGIGLGPFLARAGFDVWIAEMRGHGLSPR
                     NQAYKHNSVAEYARYDLPAIAAFVREQSGQAPHWVGHSLGGITLAAALGGGYLTAEHA
                     GSAALFGAQVSRVYWPLKVPPVEWGGRLLLNGFQHISGARFKRGPEDEPVGVALESLR
                     WHRLFGRFGDAERDWWAGMADVQVPLLAVSAAGDLQDPAWACRKLFEQFSSASRSFLL
                     LGKEQGFSSNFGHVEMLVSKEAQTEVWPLVEHWLRERRLPADKQHD"
     gene            1157..1456
                     /locus_tag="VLF16_10560"
     CDS             1157..1456
                     /locus_tag="VLF16_10560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske (2Fe-2S) protein"
                     /protein_id="HSX71362.1"
                     /translation="MFVALERLINLQDGYRRTVRVAGRELLLLVVEQQPLLLENRCPH
                     QGAPLHNATLSGRVLRCARHGVEFDLYSGQPLNARCPALNRFDLAYDGDRIGIDV"
     gene            1477..1965
                     /gene="rraA"
                     /locus_tag="VLF16_10565"
     CDS             1477..1965
                     /gene="rraA"
                     /locus_tag="VLF16_10565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008428 - ribonuclease inhibitor activity
                     [Evidence IEA];
                     GO_process: GO:0051252 - regulation of RNA metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E activity regulator RraA"
                     /protein_id="HSX71363.1"
                     /translation="MQYVTPDLCDAYPELVQVVEPMFANFGGRDSFGGEIVTVKCHED
                     NSLVKSQADQPGQGKVLVVDGGGSLRRALLGDMIAEKAAKNGWEGMVIYGCVRDVDVL
                     AQTDLGVQALASHPMKTDKRNIGDLNVAVTFGGVTFQPGHYVYADNNGIIVSPEPLKM
                     PE"
     gene            1979..2959
                     /locus_tag="VLF16_10570"
     CDS             1979..2959
                     /locus_tag="VLF16_10570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015885348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZntB"
                     /protein_id="HSX71364.1"
                     /translation="MFEKSNLHWGLVHAFVLDGRGGARSLEWDQLPGLQLADQESLWL
                     HWDRGHPETHDWLRRHSGLSEFSCDLLLEENTRPRLLTLPEHALLLFLRGVNLNPGAA
                     PEDMISLRIFADARRVISLRLRPLRATEELIALLEKGQGPRDSAELVQQLAHYMTDRV
                     DGLLEKLSEQVEGQEERLDGDARFMPDHGLVLQVRRRAAGLRRFLSPQRDIFAQLTRN
                     GFGDADQWNELNNRLTRHLEELEMVRERVGLVLESEHRRMSEKMNRAMYLLGVTTVFF
                     LPMSFLTGLLGINVGGIPGADSNYGFFLICAILASVGALQWWVFRRLRWL"
     gene            3016..3255
                     /locus_tag="VLF16_10575"
     CDS             3016..3255
                     /locus_tag="VLF16_10575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CrfX protein"
                     /protein_id="HSX71365.1"
                     /translation="MYDPFEESLRDLLKSSPADHDDDATLGRVLKTANRQVGVGDLFG
                     LMGRGLEALMIALNNGSPHLTPVSRSSARSADKAD"
     gene            3258..>4025
                     /locus_tag="VLF16_10580"
     CDS             3258..>4025
                     /locus_tag="VLF16_10580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HSX71366.1"
                     /translation="MELDPWTQALVAAMTTLWSKIAGFIPNLFVALVLVLLGFVVAKL
                     LDTLISKLLAKLGLDRLMAGTGLTKLMARIGIQVSVSTLIGKIVYWFVLLIFLVSAAE
                     SLGLQRVSATLDVLALYLPKVFGAALVLLAGVLLAQLVSSLVRGAAEGVGLDYAAGLG
                     RIAQGLVIIISISVAIGQLEVKTDLLNNVIAIVLISVGLAVALALGLGSREIAGQILA
                     GIYVRELYEVGQQVKVGEVEGQIEEIGTVKTVLLTDEG"
BASE COUNT          647 a         1272 c         1353 g          753 t
ORIGIN      
        1 ccccgaagcc gttaccagaa gggtgggagc gatcccgccc ttttttatgg cctgtcatcc
       61 aggccgagct gccaccgcga aacggcgttg gaatgcccgg ccactttctt gtgcaagagc
      121 aacatgcaga gcagtagtga gttgtttccc gtcgcgctgg ttagcgccga actgcgcggc
      181 gacctgagcg aagacgtcta tcgcctgaag cccggcaacg cgccggattt ctccgtcgag
      241 ctggcgctca cccggctggg cctggcaggc cagcaggggc ggggtgtgcc ggtgatcctg
      301 ctgcatggca gcttctccaa ccggcgcttc tggtattcgc cacgcggcat cggcctcggg
      361 ccttttctcg cgcgtgcggg tttcgatgtc tggatcgcgg agatgcgggg gcatgggctg
      421 tcgccacgca atcaggcgta caagcacaac agcgtcgccg agtacgcccg ctacgacctg
      481 ccggccatcg ccgccttcgt ccgcgagcag agcggccagg cgccgcattg ggtcggtcat
      541 tctctcggcg gcatcaccct ggcggcggcg ctgggcggcg gttacctcac ggccgagcat
      601 gccggctcgg cggcgctgtt cggcgcgcag gtcagccgcg tgtactggcc gctcaaggtg
      661 ccgccggtgg agtggggcgg gcgcctgctg ctgaatggct tccagcatat ctccggcgcc
      721 cgtttcaagc gtggcccgga ggacgaaccg gtcggcgtgg cgctggagag cctgcgctgg
      781 caccgactgt tcggccgttt cggcgatgcc gagcgcgact ggtgggcggg catggccgat
      841 gtgcaggtgc cgctgctggc cgtgagcgca gccggtgatc tgcaggatcc ggcctgggcc
      901 tgtcgcaagc tgttcgagca gttcagctcc gcgtcgcgca gctttctgct gctgggcaag
      961 gagcagggct tttccagcaa ctttggccat gtcgagatgc tggtcagcaa ggaggcgcag
     1021 accgaagtgt ggccactggt cgagcactgg ctgcgcgagc ggcgactgcc cgcagataag
     1081 cagcacgatt gaggttacaa gggttcaggc atacggctaa gatgtgacga aattcgccgg
     1141 tgcggtcacg attcgcatgt ttgtcgccct ggaacgcctg atcaacctgc aggatggcta
     1201 ccggcgtacc gttcgcgtcg ccggccgcga gctgctgttg ctggtggtcg agcagcagcc
     1261 actgctactg gagaaccgct gcccgcatca gggcgcgccg ctgcacaacg ccacgctgag
     1321 cggccgggtg ctgcgttgcg cccgccacgg cgtcgagttc gatctgtaca gcgggcagcc
     1381 gctcaatgcg cggtgcccgg cgctgaaccg gtttgacctg gcctatgacg gcgaccgcat
     1441 cggtatcgat gtctgattca accaaaggag cttcccatgc aatacgtcac tcccgacctg
     1501 tgcgacgcct acccggaact ggtccaggta gttgagccga tgttcgccaa cttcggcggc
     1561 cgcgattcct tcggcggcga gatcgtcacc gtcaagtgcc atgaggacaa ctcgctggtg
     1621 aagtcgcagg ccgaccagcc ggggcagggc aaggtactgg tggtggatgg tggcggctcc
     1681 ctgcgtcgcg cgctgctggg cgacatgatt gccgagaagg ccgcgaagaa cggttgggaa
     1741 ggcatggtca tctatggttg cgtgcgtgac gtcgacgtgc tggcgcagac cgatctgggc
     1801 gtgcaggccc tggccagcca cccgatgaag accgacaagc gcaacatcgg cgacctcaac
     1861 gtggccgtga ccttcggcgg agtgaccttc cagccgggcc actacgtgta tgccgacaac
     1921 aacggcatca tcgtgtcgcc cgaaccgctg aagatgccgg agtaaggcgc acggcgggat
     1981 gttcgagaaa agcaatctgc attgggggct ggtgcacgcc ttcgtcctcg acgggcgagg
     2041 cggcgcccgc agcctggaat gggaccagct tcctgggctg cagttggcgg accaggagag
     2101 tctctggctg cactgggatc gcggccaccc cgagacccac gactggctgc gtcggcacag
     2161 cggcctcagc gagttcagct gtgatctgct gctcgaggaa aacacccgcc cgcgtctgct
     2221 gacgctgccc gagcacgcgc tgctgctgtt cctgcgcggc gtcaacctga accccggtgc
     2281 ggcgcccgaa gacatgattt cgctgcgcat ttttgccgat gcccgccgcg tcatttcctt
     2341 gcgcctgcgt ccgctgcgcg ccaccgaaga gctcatcgcg ctgctggaaa agggccaggg
     2401 cccgcgcgac agcgcggagc tggtgcagca gctggctcat tacatgaccg accgcgtcga
     2461 cgggctgctg gaaaagctct cggagcaggt cgaaggccag gaagaacggc tcgacggcga
     2521 tgcgcgcttc atgcccgatc atggtctggt gttgcaggtg cgtcgccgcg cggccggcct
     2581 caggcgcttc ctgtcgccgc agcgggacat cttcgcccag ctgacgcgca acggtttcgg
     2641 cgacgccgat cagtggaacg agctgaacaa tcgcctcacc cgtcatctgg aggagctgga
     2701 gatggtccgc gaacgggtag ggctggtgct ggaatccgag caccggcgga tgagcgagaa
     2761 aatgaatcgc gccatgtacc tgctcggtgt cacgaccgtg ttcttcctgc ccatgagctt
     2821 tctcaccggc ctgctcggca tcaacgtcgg cggcattccc ggtgcggaca gcaactacgg
     2881 tttctttctg atctgcgcaa tcctggccag tgtcggcgct ctgcaatggt gggtttttcg
     2941 ccgcctgcgc tggctgtagc gtgtgacccg tgacccgctc gccacgtcta ggcaacaaat
     3001 ccgtgcgagg tacgcatgta cgatcccttt gaagaatccc tgcgcgactt gttgaagtcg
     3061 tcgcccgcgg accacgacga cgatgcgacc ctcgggcgcg tgctcaagac cgccaaccgc
     3121 caggtcggcg tcggcgacct gttcggcctg atgggccgcg gcctggaagc cctgatgatc
     3181 gccctcaaca acggttcgcc gcacctgacg ccggtgtccc gttcttccgc ccgttctgca
     3241 gacaaggctg actgaatatg gaactcgatc cctggaccca agcgctggtc gcagcgatga
     3301 ccaccctctg gagcaagatc gcgggcttca tccccaatct gttcgtcgcc ctggtcctcg
     3361 tgctgctcgg cttcgtggtg gccaagctgc tcgacaccct gatctccaag ctgctggcca
     3421 agctcggctt ggaccgtttg atggccggaa ccgggttgac caagctgatg gcgcggatcg
     3481 gtatccaggt gtcggtctcg accctgatcg gcaagatcgt ctactggttc gtgctgctga
     3541 tcttcctcgt ctcggccgcc gaatccctgg gcctgcagcg tgtttcggcg actctcgacg
     3601 tgcttgccct gtacctgccg aaggtgttcg gcgcggcctt ggtactgctc gccggcgtgc
     3661 tcctggcgca gctggtcagc agtctggtac gcggcgccgc cgagggtgtc gggttggact
     3721 atgccgccgg cctcggccgc atcgcccagg gcctggtgat catcatcagc atctcggtcg
     3781 ccatcggcca gctggaggtg aagaccgacc tgctgaacaa cgtgatcgcc atcgtgctga
     3841 tttcggtggg cctggcggtg gcgctggcgc tcggcctggg cagccgggag attgccgggc
     3901 agatcctggc cggcatttat gtgcgcgaac tctatgaggt cgggcaacaa gtgaaggtcg
     3961 gcgaggtcga aggccagatc gaggaaatcg gcacggtgaa aaccgttctg ctgaccgacg
     4021 agggc
//
LOCUS       DATIHC010000638         2015 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4065, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000638 DATIHC010000000
VERSION     DATIHC010000638.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2015
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4065"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..616)
                     /locus_tag="VLF16_10585"
     CDS             complement(<1..616)
                     /locus_tag="VLF16_10585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009684079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSX71367.1"
                     /translation="MASETFATAYPWVERLIRLDTTSALSNLELIEMVQTYFHAHGLE
                     TYLTFDQTRAKANLFATVPAHDGSVTGGLVLSGHTDVVPVKGQAWSSDPFVPTVRDGK
                     LFGRGACDMKGFLGVALEMLPAMLDAKLAAPMHFALSYDEEIGCAGAPSMVRDLVQRG
                     VAPKGCIVGEPTGMGVVVAHKGINAYRCRVRGHAAHSSLQPEGVN"
     gene            complement(655..>2015)
                     /locus_tag="VLF16_10590"
     CDS             complement(655..>2015)
                     /locus_tag="VLF16_10590"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020798448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003941 - L-serine ammonia-lyase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009063 - amino acid catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HSX71368.1"
                     /translation="FDLFKIGIGPSSSHTVGPMRAARLFVEALERHGVLQTTARVRVE
                     LYGSLSATGRGHGTVDAILLGLCGETPEAVDPDLAAGVVARVRREDEIALWRRGRNIR
                     LRLDEDLLFMATALPQHPNGMRLSARDSAGIELLAQTYFSIGGGFIVAEDQLGILVEA
                     EADGQPLAFASAAELLALCDEHGKDIAGIMWARERLLRDDSALRDGLLGIWRTMSSCI
                     DRGMRTGGHLPGPLGVRRRAADLFARLGARGNGRTAPEAALDWLSLYAMAVNEENACG
                     GRVVTAPTNGAAGIIPAVIRYYLDFVPGADEDGVIRFLLTAAAIGILYKLNASISGAE
                     VGCQGEVGVACSMAAAGLCAVLGGTPTQVENAAEIGMEHHLGLTCDPVGGRVQIPCIE
                     RNAMGAVKAVNAARIALFGDGQHVVSLDAVIRTMKQTGADMQSKYKETSQGGLAVNII
                     EC"
BASE COUNT          291 a          679 c          751 g          294 t
ORIGIN      
        1 cattcacccc ctcgggctgc agcgaggaat gcgccgcgtg gccgcggacg cggcagcggt
       61 aggcgttgat gcccttgtgc gccaccacca cgcccatgcc cgtcggctcg ccgacgatgc
      121 agcccttcgg cgccacgccg cgctggacca ggtcacgcac catcgacggc gcgccggcgc
      181 agccgatctc ttcgtcgtag gagagcgcga agtgcatcgg cgcggcgagc ttggcatcga
      241 gcatcgccgg cagcatctcc agggccacgc cgaggaagcc cttcatgtcg caggcgccgc
      301 ggccgaacag cttgccgtcg cgcacggtgg gcacgaacgg gtcggagctc caggcctggc
      361 ccttcaccgg caccacgtcg gtgtgccccg acagcaccag cccgccggtg acgctgccgt
      421 cgtgggcggg caccgtggcg aagaggttgg ccttggcgcg cgtctggtcg aaggtcaggt
      481 aggtctccag gccatgggcg tggaagtacg tctgcaccat ctcgatgagt tcgaggttgg
      541 agagcgcgct ggtggtgtcg aggcggatca gtcgctccac ccaggggtag gcggtggcga
      601 aggtttcgct ggccatgtcg gtaaatcctt gtgcggtcga agccggcgcg ccgctcaaca
      661 ctcgatgatg ttgacggcga gcccgccttg ggaggtttct ttgtatttgc tctgcatgtc
      721 ggcgccggtc tgcttcatgg tgcggatcac cgcgtccagc gagaccacgt gctggccgtc
      781 gccgaacagg gcgatgcggg cggcgttgac ggccttcacc gcgcccatgg cgttgcgttc
      841 gatgcagggg atctgcacgc ggccgcccac cggatcgcag gtcaggccga ggtggtgttc
      901 catgccgatc tcggcggcgt tctcgacctg ggtcggggtg ccgccgagca ccgcgcacag
      961 gcccgcggcg gccatcgagc aggcgacgcc gacctcgccc tggcagccga cctcggcgcc
     1021 ggagatggag gcgttgagct tgtagaggat gccgatggcg gcggcggtga ggaggaagcg
     1081 gatcacgccg tcctcgtccg cgccggggac gaagtccagg tagtagcgga tcaccgcggg
     1141 gatgatcccg gcggcgccgt tggtgggcgc ggtcaccacg cgcccgccgc acgcgttctc
     1201 ctcgttcacc gccatggcgt acaggctcag ccagtcgagg gcggcctcgg gcgcggtgcg
     1261 gccgttgccc cgggcgccga gacgggcgaa caggtcggcg gcgcggcgcc ggacgcccag
     1321 cggccccggc agatggccgc cggtacgcat gccgcggtcg atgcaggacg acatggtccg
     1381 ccagatgccc agcagcccgt cgcgcagcgc ggagtcgtca cgcagcaggc gctcgcgggc
     1441 ccacatgatg ccggcgatgt ccttgccgtg ctcgtcgcac agcgccagca actcggcggc
     1501 gctggcgaag gcgaggggct gcccgtcggc ctcggcctcg acgaggatgc cgagctggtc
     1561 ctcggcgacg atgaagccgc cgccgatgga gaaataggtt tgggccagca gctcgatgcc
     1621 ggccgaatca cgcgcactca ggcgcatgcc gttcgggtgc tggggcaggg cggtggccat
     1681 gaagagcagg tcctcgtcca gccgcaggcg gatgttgcga ccgcggcgcc acagggcgat
     1741 ttcgtcctcg cgccgcactc gggcgaccac accggcagcg aggtcggggt ccacggcttc
     1801 cggggtctcg ccgcacaggc ccaggaggat ggcgtccacc gtgccgtgac cgcggccggt
     1861 ggcgctcagc gagccgtaca gctccacgcg cacccgggcg gtggtctgca gcacgccgtg
     1921 gcgttcgagc gcctcgacga acaggcgggc cgcgcgcatc gggccgacgg tgtgcgagct
     1981 ggagggcccg atgccaatct tgaagaggtc aaaca
//
LOCUS       DATIHC010000639         6385 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8912, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000639 DATIHC010000000
VERSION     DATIHC010000639.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6385
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8912"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..180)
                     /locus_tag="VLF16_10595"
     CDS             complement(<1..180)
                     /locus_tag="VLF16_10595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017362049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylulose kinase"
                     /protein_id="HSX71369.1"
                     /translation="MSRDDRLVLAVDLGSSGCKTALVGLDGRVRAFAFRAVSNHLLPG
                     AGVEQCPEDWWRAFEE"
     gene            355..1026
                     /locus_tag="VLF16_10600"
     CDS             355..1026
                     /locus_tag="VLF16_10600"
                     /inference="COORDINATES: protein motif:HMM:NF037005.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HSX71370.1"
                     /translation="MANKTLSSTPDAKPRTPRAPKQERSQARFEAILRTALELIAARG
                     YEAVSMREIAREAGLPIASLYLYFPTKLAIVKEVWQRYTSSVSERLEADLQRIVDPSN
                     SADAGLLIERLIDLMVEIQVSHPGFVEVWGCVAAAPELRELNQADTLATAGMVAMAIR
                     SVHPNVDPEQAEGLALVLCEGGSSVTKLALSLPEPQRQQRVQQLKRTLQFIYTSSLEA
                     FARQA"
     gene            1169..2968
                     /locus_tag="VLF16_10605"
     CDS             1169..2968
                     /locus_tag="VLF16_10605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1302 domain-containing protein"
                     /protein_id="HSX71371.1"
                     /translation="MSHNKSKIALAVGVGIWGIQAQAFEIDTGPNVTTSLESVAEFTS
                     VYRTSSPERIEQSGQNVFINNNDGSEYYDTGFVSNEFKLTSELHVRTEQDGLFVRGTA
                     WYDTQIMDHDPSGDGFDTHNTDSDERYPSDLENRAGHRARLLDAYLYTNRYLGDMPAS
                     LRLGRQVINWGEGIFYADGLNVINPVDIGRVVLPNASLKDALLPTNMVSAQLGLTDRL
                     DVEAFYGLEWKGHELIPTGAFLNNQDYFGKGSNGVLVDLRGELGPLADLVPGLNGENG
                     IVAGARYGREHDARDDGQFGVAMRYLMEEWNNTEFSLYYLNYHSKVPFLRVQKGQSFA
                     CSAGSGGRFGDLCSLAQLLDPASVPLVDGLALLDSTYYDFVYPEDIRLFGLSVSGTIG
                     DTSVAGELTYRPNAPLEPSMTYELEQMAEGALGGGGASGGSIDLGEFGDGSANDPRRS
                     IDLYKRDELYTGSLSAIHTFGPTAGLDDLMLLGEAAFNYIPGGLLDTVNYDYLDAFAW
                     GYTVNLSGLIQDVQPNFDLMPAITFRQDVSGTSPALNENFIQGRKSATVELGAKYGQK
                     LAGKLAYTSFWGARKDNALIDRDHVALNVSYSF"
     gene            2983..4335
                     /locus_tag="VLF16_10610"
     CDS             2983..4335
                     /locus_tag="VLF16_10610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016491979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1329 domain-containing protein"
                     /protein_id="HSX71372.1"
                     /translation="MTRTALSAATLLFALLPLAAQAKVSAEQAAQLGAALTPFGAERQ
                     GDAAKGIAEWSGGLQAPAGYGGPGSFHVDPFADEKPLRVVDAQNMAADAANLSPGVKA
                     LLKTYPQSFKVPVYPSHRSFAAPEEIAANTRRNAEQATLAEGGNGLKDAYAGIPFPIP
                     ADGREAIWNHIARWQGRYIDEVSVTAQVTTSGSHSILREHLQLLSNYYNPQKDAGSLD
                     NILYYFASELLPPSRDVGRALLVHETIDQVAEPRSAWIYNPGQRRVRRAPTLAYDTPI
                     DGIYADDTDMYNGATDRYDWKLIGKQSLLVPYHNYAMEKPGREVDELVKPGHLNSDLT
                     RWEMHRVWVVEATLRQGQRHVHAKRRFYLDEDSWYALMVENYDARGELWHVNLAFSKN
                     AYEVPTITPVNIVYHDLIARTYTVIGLRNNEKAPRQFLLTPPPESYFTPSSLRRRGTQ
                     "
     gene            5169..6053
                     /locus_tag="VLF16_10615"
     CDS             5169..6053
                     /locus_tag="VLF16_10615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015886118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar nucleotide-binding protein"
                     /protein_id="HSX71373.1"
                     /translation="MRMRLLLLGGGNALGQALVRQGAEEDIGFLAPRPPEGGWDRASL
                     TQLLDETRPDALINLAYYHDWFQAEHYDERRFALQERAVERLAELCQHHNILLLQPSS
                     YRVFDGSRATAYSEKDEPVPLGLRGQALLRIEQCVRATCPRHVLLRFGWLLDESPDGL
                     LGRFLRRAELEQELFMADDRRGNPTPVDDAARVILAVLKQLDCQSPLWGIYHYGGHEA
                     TTPLALGQAVIGEMRGLHPLKVQEVTPQAHAARPDAAEEPQHAVLACKKILHTFGIKP
                     RAWRAGLPALLDRHYRRA"
     gene            6071..>6385
                     /locus_tag="VLF16_10620"
     CDS             6071..>6385
                     /locus_tag="VLF16_10620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSX71374.1"
                     /translation="MSDSLILVTGGAGFIGSHLCDALLAAGHRVRVLDNLSTGQRENL
                     PLQDARIELIEGDVADAARVRHAMAGCSAVAHLAAVASVQASVDDPVSTHQSNFVGTL
                     NVC"
BASE COUNT         1067 a         2278 c         2038 g         1002 t
ORIGIN      
        1 ctcctcgaag gcgcgccacc agtcttccgg gcactgttcg acgccggcgc cgggcaacag
       61 gtggttgctc accgcgcgga aggcgaaggc acgcacgcgg ccatccaggc cgaccagggc
      121 ggtcttgcag ccggagctgc cgaggtccac ggccagtacc aaacggtcgt cgcggctcat
      181 cgcggcgcgt tcccgcaggg cgcgccctgc gcaccttcgc cacgcccgaa gcgcttggcg
      241 tctgtcgtgc gccgctgtac tgcgcggtgt ttccggctgt tttgcatcgg cccctttcca
      301 ttttttcaga gtcgcgctaa aacataagca ttgctcatgt ttttcgagaa tgctgtggcc
      361 aacaaaacct tgtcaagcac ccccgacgcg aaaccccgta cgccgcgtgc acccaagcag
      421 gagcgtagcc aggcgcgctt cgaggcaatc ctgcgcactg cgctggagct gatcgcggcg
      481 cgcggttacg aggcggtgtc gatgcgcgag atcgcccgcg aggccggctt gccgatcgcc
      541 tcgctgtacc tgtatttccc gaccaagctg gccatcgtca aggaggtctg gcagcgctac
      601 accagcagcg tcagcgagcg cctggaagcc gatctgcaac ggatcgtcga cccgagcaac
      661 agcgccgacg ccggcctgct gatcgagcgg ctgatcgatt tgatggtgga gatccaggtc
      721 agccatcccg gcttcgtcga ggtgtggggc tgcgtggccg cggcgccgga gctgcgcgag
      781 ctgaaccagg cggacaccct ggccaccgcc ggcatggtcg ccatggcgat ccgtagcgtg
      841 catccgaacg tcgatccgga gcaggccgag ggcctggcgc tggtgttgtg cgagggcggc
      901 agctcggtga ccaagctggc gctgagcctg cccgagcctc agcgccaaca gcgggtgcag
      961 cagctcaagc gcaccctgca gttcatttac accagcagcc tcgaggcctt tgctcgacag
     1021 gcgtgaaggg cgctgcgcag agggctgcgt ggcacctgtg tagaaatgtt tcaagggccc
     1081 tttcggcgac gctttttgtc cgcttcggcc ccatggaggt tttagcaagt cggctagttt
     1141 cgccacatca ccgctagggg acagcagcat gtcgcataac aagagcaaga tagcgctggc
     1201 agttggggta ggtatctggg ggattcaggc tcaggcgttc gagatcgaca ccgggccgaa
     1261 tgtcaccacg tcgctggaga gcgtcgccga gttcacctcg gtgtatcgca ccagttcgcc
     1321 cgagcgcatc gagcagagtg ggcagaacgt cttcatcaac aacaacgacg gcagcgagta
     1381 ctacgacacc ggcttcgtct ccaacgagtt caagctgacc tccgagctgc acgtgcgtac
     1441 cgagcaggac ggcctgttcg tccgtggcac cgcctggtac gacacccaga tcatggacca
     1501 cgaccccagc ggcgacggct tcgacaccca caacaccgac agcgacgagc gctacccctc
     1561 ggacctggag aaccgcgccg gccaccgcgc gcgcctgctc gacgcctacc tgtacaccaa
     1621 ccgctacctg ggcgacatgc cggccagcct gcgcctgggg cggcaggtga tcaactgggg
     1681 cgagggcatc ttctacgccg acggcctcaa cgtgatcaac ccggtggaca tcggccgtgt
     1741 ggtgctgccc aacgccagcc tcaaggacgc gctgctgccg accaacatgg tctccgccca
     1801 gctcggcctc accgaccggc tcgacgtgga ggcgttctac ggcctggagt ggaagggcca
     1861 cgagctgatc cccaccggcg ccttcctcaa caaccaggac tacttcggca agggcagcaa
     1921 cggcgtgctg gtcgacctgc gcggcgagct gggcccgctg gccgacctgg tgcccgggct
     1981 caacggcgag aacggcatcg tcgccggcgc ccgctacggc cgcgagcacg acgcccgtga
     2041 cgacggccag ttcggcgtcg ccatgcgcta cctgatggag gagtggaaca acaccgagtt
     2101 cagcctctac tacctcaact accacagcaa ggtgccgttc ctgcgggtgc agaaggggca
     2161 gtcgttcgcc tgcagcgccg gcagcggcgg ccgcttcggc gacctgtgca gcctggcgca
     2221 gctgctcgac ccggcctcgg ttccgctggt cgacggcctg gccctgctcg acagcaccta
     2281 ctacgacttc gtctaccccg aggacatccg cctgttcggc ctcagcgtct ccggcacgat
     2341 cggcgacacc agcgtcgccg gcgagctgac ctaccggccc aacgcgccgc tggagccctc
     2401 gatgacctac gagctggagc agatggccga aggcgccctg ggcggcggcg gggccagcgg
     2461 cggcagcatc gacctcggcg agttcggcga cggctcggcc aacgatccgc gtcgcagcat
     2521 cgacctgtac aagcgcgacg agctctacac cggctcgctg tccgccatcc acaccttcgg
     2581 ccccaccgcc ggcctggacg acctgatgct gctgggcgag gccgccttca actacatccc
     2641 cggcggcctg ctggacacgg tcaactacga ctacctggac gccttcgcct ggggctacac
     2701 ggtgaacctc tccggcctga tacaggacgt gcagcccaac ttcgacctga tgccggcgat
     2761 caccttccgc caggacgtgt ccggcacctc gccggcgctc aacgagaact tcatccaagg
     2821 gcgcaagtcc gccaccgtcg agctgggcgc caagtacggc cagaaactgg ccggcaagct
     2881 ggcgtacacc tcgttctggg gcgcgcgcaa ggacaacgcg ctgatcgacc gcgaccacgt
     2941 cgccctcaac gtctcctact ccttctgatg gcagggatca ccatgactag aacagctttg
     3001 agtgccgcga ccctcttgtt cgccctgctg ccgctggcgg cccaggccaa ggtcagcgcc
     3061 gagcaggcgg cacagctcgg cgccgcgctg acgcccttcg gtgccgagcg ccagggcgat
     3121 gccgccaagg gcatcgccga gtggtccggc ggcctgcagg cgccggccgg ctatggcggc
     3181 cccggcagtt tccacgtcga tcccttcgcg gatgaaaagc cgctgcgggt ggtcgatgcg
     3241 cagaacatgg cggccgacgc ggccaacctc agccccgggg tgaaagcgct gctcaagacc
     3301 tacccgcaga gcttcaaggt gccggtctac ccgagccacc gcagcttcgc cgcccccgag
     3361 gagatcgccg ccaacacccg gcgcaacgcc gagcaggcga ccctggccga gggcggcaac
     3421 gggctcaagg acgcctacgc cggcattccc ttcccgatcc cggcggacgg ccgcgaggcg
     3481 atctggaacc acatcgcccg ctggcagggg cgctacatcg acgaggtgtc ggtgaccgcc
     3541 caggtcacca ccagcggcag ccattccatc ctgcgcgagc acctgcagct gctctccaac
     3601 tactacaacc cgcagaagga cgccggcagc ctcgacaaca tcctctacta cttcgcctcc
     3661 gaactgctgc cgccatcgcg cgacgtgggc cgcgcgctgc tggtgcacga gaccatcgac
     3721 caggtcgccg agccgcgctc ggcgtggatc tacaaccccg gccagcgccg cgtgcgccgc
     3781 gctccgaccc tggcctacga cacgccgatc gacggcatct acgccgacga caccgacatg
     3841 tacaacggcg ccaccgaccg ctacgactgg aagctgatcg gcaagcagag cctgctggtg
     3901 ccctaccaca actacgccat ggagaagccg ggccgcgagg tggatgaact ggtcaagccc
     3961 ggccatctga acagcgacct gacccgctgg gagatgcacc gcgtatgggt ggtcgaggcg
     4021 accctgcgcc agggccagcg ccacgtgcat gccaagcgtc gtttttacct ggacgaggac
     4081 agctggtacg ccctgatggt ggagaactac gacgcccgcg gcgagctgtg gcacgtcaac
     4141 ctggccttca gcaagaacgc ctacgaggtg ccgaccatca ccccggtgaa catcgtctac
     4201 cacgacctga tcgcccggac ttacacggtg atcggcctgc gcaacaacga gaaggcgccc
     4261 cgccagttcc ttctcacccc accgccggag agctacttca ccccgtccag cctgcgccgc
     4321 cgcggcacgc agtgacttcg cgccgcattc ccatgccgga agcgctcctc tcctctgtgg
     4381 gggctgggga agagggtgtc ggttgtcgag cgtcggccct ctccctgacc ctctcccgta
     4441 aacgggagag ggaaatgggg gcgcctgcgt actcttcacc ccgatccgtc tggccaccgc
     4501 gggacttgtg atctctctct gctccacgcc ggtgcgctcc cctcttccat ttatgggaaa
     4561 ggagctgggg gagagggtgc ggattgtcga gcgttggccc tctccctaac cctctcccgt
     4621 aagcgggaga gggatttggg acgcctgcgt tcgtgtcatc catcccgtct ggccgccgcg
     4681 ggacttgtga tctctctctc cctgcttcac gccggtgcgc tcccctctcc cattgatggg
     4741 aaaggggctg ggggagaggg tgcggattgt cgagcgttgg ccctctccct agccctctcc
     4801 cgtaaacggg agagggaagt ggggggcgcc tgcgtactct tcaccccgat ccgtctggcc
     4861 gccgcgggac tggtgatctt tccttgctcc gtgccggatc gctcccctct cccatttatg
     4921 ggagaggggc ccgggggaga gggtgccggg tcgactgagc attggcccac gcggaccctc
     4981 tcctgtaagc gggggaggga agtgggggac acccacgccc gtcgtcccta cgacaatctc
     5041 gcaggccacc ggccagcccc cacacccggg ccggtagtga cgcgccgccg tgaaacccgc
     5101 aaaatgccca ctttcgcccc gtcgctcagg cggtcggggc ctggtcagtc tttcgggtcc
     5161 tgttcttaat gcgaatgcgg ctgttattgc tgggtggggg caatgccctg ggtcaggcgc
     5221 tggtgcgcca gggtgccgag gaagacatcg gcttcctcgc cccgcgtccg ccggaaggtg
     5281 gctgggaccg cgccagcctg acccagctgc tcgacgaaac ccgccccgat gcgctgatca
     5341 acctcgccta ctaccacgac tggttccagg ccgagcacta cgacgagcgc cgcttcgccc
     5401 tgcaggaacg cgccgtcgaa cgcctggccg agctgtgcca gcaccacaac atcctcttgc
     5461 tgcagccctc cagctaccgc gtgttcgacg gctcgcgcgc caccgcctac agcgagaagg
     5521 acgagccggt gcccctgggc ctgcgcggcc aggcgctgct gcgcatcgaa cagtgcgtgc
     5581 gcgccacctg cccgcgccat gtgctgctgc gcttcggctg gctgctggac gagagcccgg
     5641 acggcctact cggccgcttc ctgcgccgcg ccgagctgga gcaggagctg ttcatggccg
     5701 acgaccgccg cggcaatccg acgccggtgg acgacgccgc gcgggtgatc ctcgccgtgc
     5761 tcaagcagct ggactgccag agcccgctat ggggcatcta ccactacggc ggccacgaag
     5821 ccaccacgcc gctggccctg gggcaggcgg tgatcggcga gatgcgcggc ctgcacccgc
     5881 tcaaggtgca ggaagtcact ccccaggccc acgcggcccg gccggatgcc gccgaagaac
     5941 cgcaacacgc ggtgctggcc tgcaagaaga tcctgcacac cttcggcatc aagccacggg
     6001 cctggcgcgc cggcctgccg gctctgctgg accgccacta ccgacgcgcc tgacgctttc
     6061 gagaattccc atgtccgact ccctgattct ggtcaccggc ggcgccggct tcattggctc
     6121 ccacttgtgc gatgcgctgc tggcggccgg ccaccgggtg cgcgtgctgg acaacctgtc
     6181 caccggccag cgcgagaacc tgccgctgca ggacgcgcgc atcgagctga tcgagggcga
     6241 cgtggctgac gccgcgcggg tgcgccacgc gatggccggc tgcagcgcgg tggcgcacct
     6301 ggccgcggtg gcctcggtac aggcctcggt ggacgacccg gtgagcaccc accagagcaa
     6361 tttcgtcggc accctcaacg tctgc
//
LOCUS       DATIHC010000640         3294 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36778, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000640 DATIHC010000000
VERSION     DATIHC010000640.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3294
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36778"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..209
                     /locus_tag="VLF16_10625"
     CDS             <1..209
                     /locus_tag="VLF16_10625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71375.1"
                     /translation="EEVAQFYLVAESLRSRDLQDLARPDFQRLKLVALGRERAATPSV
                     PGYRLDDRSRWTSTPNSYLTVDCR"
     gene            221..1003
                     /locus_tag="VLF16_10630"
     CDS             221..1003
                     /locus_tag="VLF16_10630"
                     /inference="COORDINATES: protein motif:HMM:NF028441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA];
                     GO_process: GO:0044874 - lipoprotein localization to outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein-sorting protein"
                     /protein_id="HSX71376.1"
                     /translation="MRISLLGLGLLLSFPVFAEALDPTAIMRGVRDRDEGQDRRSELS
                     LVQTMADGFVRERKLLMLEKEYGEERKSTLYFTAPSDTAGTGILMHSYAEAQAREDDQ
                     WLYLPALRKTRRIATNSKEGPFLGTDFSFADIERMRVDDYQYKLLREEVYQGRPVYVI
                     EARTADGLENPRTGYSQRLIYVDRERKLILRDEFFRGGRQIKTFEVLDVAQVEGFWTV
                     NESRMSNLVEGGETRLVRSAADYNLDLGDQNFSERALRNGIR"
     gene            1003..2208
                     /locus_tag="VLF16_10635"
     CDS             1003..2208
                     /locus_tag="VLF16_10635"
                     /inference="COORDINATES: protein motif:HMM:NF018662.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1302 family protein"
                     /protein_id="HSX71377.1"
                     /translation="MRTVLIGLLGSLVGLAAQAATLSGRGHLEDGYHHDTTGASSSGH
                     RVEALLESRISEGNWTLDSVLLGRYRSQYDDAGGKLEDRMESDQDLRELYLTWAGDNW
                     QWRLGQQQIAWGRGDYFRLVDVLNPLDLREFLLPYIDDYSLGRQTRPMAVVEIYGDSL
                     EQQFVVAPRTRTTRYAPAGADFAIAGRPEGLDEDDEHERPDIGWRGKTFVDGTDLDFY
                     LFDGLSPDPLYVVEEGRLVEQQRRRSLVGASFARPAGDWVVRGDLVHLFNEPLQTPEG
                     ADNVPRSAALLGLDLTRNEWTVNLQATVSHRHGAPDSLQRATGWEASAAVLKDWSRQR
                     LNAGILWLYNRDVQSSHMLKANLGYRPWNQWYLEAGYIGFSGGQLTQYGQFDDRDRLY
                     LQVRRDFSL"
     gene            2310..3059
                     /locus_tag="VLF16_10640"
     CDS             2310..3059
                     /locus_tag="VLF16_10640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003095695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsiV family protein"
                     /protein_id="HSX71378.1"
                     /translation="MRVIAVAGLLSLSFLLSGCQALLSAAKPQSGLSVSRQAWEHRTP
                     GCEGKECPLVNIDLQKLDDLPELNARIEQELLKLTVELPGDPPPPSLDVYEREFLASA
                     KPGWMSYLQAKVLEQHDRLVVIELSSYRFTGGAHGIPGRAYLNYDREKGRLLSLDEML
                     LPDGQADFWRQAELAHQAWLKANGLDQDLDYQANWPFERTANVALLRGVVMLKYEVGR
                     IAPYASGHPELRIPYSRLNGVLKPAYFPGRG"
     gene            complement(3152..>3294)
                     /locus_tag="VLF16_10645"
     CDS             complement(3152..>3294)
                     /locus_tag="VLF16_10645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71379.1"
                     /translation="SMKITQEVRDYAKDNGLTDEQKAIEAGFAEQAERFKGEGSVIYK
                     QV"
BASE COUNT          550 a         1154 c         1076 g          514 t
ORIGIN      
        1 acgaggaggt ggcgcagttc tacctggtcg ccgagagcct gcgcagccgc gacctgcagg
       61 acctcgcccg gcccgatttc cagcgcctca agctggtcgc cctgggccgc gagcgcgccg
      121 ccacgccgag cgtgccgggc taccgcctgg acgaccgatc ccgatggaca tccaccccga
      181 acagttacct gacagtcgac tgtcgctaag gagttttccc atgcgtattt ccctgctggg
      241 cctcggcctg ctgctgagct tcccggtgtt cgccgaggcc ctcgacccca ccgccatcat
      301 gcgcggcgtg cgcgaccgcg acgaaggcca ggaccgccgc tccgaactga gcctggtgca
      361 gaccatggcc gacggcttcg tgcgcgagcg caagctgctg atgctggaga aggagtacgg
      421 cgaggagcgc aagtccaccc tgtacttcac cgcccccagc gacaccgccg gcaccggcat
      481 cctcatgcac agctacgccg aagcgcaggc ccgcgaggac gaccagtggc tgtacctgcc
      541 ggccctgcgc aagacccggc gcatcgccac caactccaag gaaggcccgt tcctcggcac
      601 cgacttctcc ttcgccgata tcgagcgcat gcgcgtcgat gactaccagt acaagctgct
      661 gcgcgaggag gtttaccagg gccgcccggt ctacgtgatc gaggcgcgca ccgccgatgg
      721 cctggagaac ccgcgcaccg gctacagcca gcgcctgatc tacgtcgacc gcgagcgcaa
      781 gttgatcctg cgcgacgagt tttttcgcgg tgggcgccag atcaagacct tcgaggttct
      841 ggatgtagcc caggtcgagg gtttctggac agtcaacgag tcacgcatga gcaacctggt
      901 ggagggcggc gagacccgcc tggtgcgcag cgccgccgac tacaacctgg acctcggtga
      961 ccagaacttc agcgagcgcg ccctgcgcaa cgggattcgc tgatgcgcac agtgttgatt
     1021 ggcctgcttg gcagtctggt cggcctggcc gcgcaggccg cgaccctcag cggtcgcggt
     1081 catctggaag acggctacca ccacgacacc accggcgcca gcagctccgg ccaccgcgtc
     1141 gaggcgctgc tggagagccg catcagcgag ggcaactgga cgctcgacag cgtgctgctc
     1201 ggtcgctacc gcagccagta cgacgatgcc ggcggcaagc tggaggaccg catggagtcc
     1261 gaccaggacc tgcgcgagct gtacctgacc tgggccggcg acaactggca gtggcgcctc
     1321 ggccagcagc agatcgcctg gggccgcggc gactacttcc gcctggtcga cgtgctcaac
     1381 ccgctggacc tgcgcgagtt cctgctgccc tacatcgacg actactccct cggccgccag
     1441 acccgtccga tggccgtggt ggagatctac ggcgacagcc tggagcagca gttcgtcgtc
     1501 gcgcccagga ccaggaccac ccgctacgcc ccggccggtg ccgacttcgc catcgccggg
     1561 cggccggaag gtctggacga ggacgacgag cacgaaaggc cggacatcgg ctggcgcggc
     1621 aagaccttcg tcgacggcac cgacctggac ttctacctgt tcgacggcct cagtcccgat
     1681 ccgctgtatg tggtggagga gggccggttg gtcgagcagc agcgccggcg cagcctggtc
     1741 ggcgcctcgt tcgcgcggcc ggccggcgac tgggtagtgc gcggcgacct ggtgcatctg
     1801 ttcaacgagc cgctgcagac accggaaggc gcggacaacg tgcccaggtc tgcggcgctg
     1861 ctgggcctcg acctgacccg caacgagtgg acggtcaacc tgcaggccac ggtcagccat
     1921 cgccacggcg cgccggacag cctgcaacgg gcgaccggct gggaggcctc ggcggcggtg
     1981 ctcaaggact ggtccaggca gcgtctcaat gccggcatcc tctggctgta caaccgcgac
     2041 gtgcagagca gccacatgct caaggccaac ctcggctacc ggccctggaa ccagtggtat
     2101 ttggaggcgg gctacatcgg tttcagcggc ggccagctca cccagtacgg ccagttcgac
     2161 gaccgcgacc gcctctacct gcaggtgcgc agggacttca gcctgtgatt gtcccgctgc
     2221 gctccggccg gcgacaatga cgccaccgcc ccgggaacgc ccgcggcggc atgcagtcga
     2281 aacgcccgtc gccgtcccga ggaaagccca tgcgtgtcat cgccgtagcc ggcctgctgt
     2341 ccctgtcgtt cctgctcagc ggctgccagg cgctgctgtc cgccgccaag ccccagtcgg
     2401 gcctgtccgt cagccgtcag gcctgggagc accgcacgcc ggggtgcgaa ggcaaggaat
     2461 gcccgctggt caacatcgac ctgcagaagc tggatgacct gccggagctg aacgcgcgca
     2521 tcgagcagga gctgctcaaa ctgaccgtcg agctgccggg cgatccgccg ccgccgtcac
     2581 tggacgtcta cgagcgcgag tttctcgcca gcgccaaacc gggctggatg agctacctgc
     2641 aagccaaggt cctggagcag catgaccgcc tggtggtgat cgaactgtcc agctatcgct
     2701 tcaccggcgg cgcccacggc attcccgggc gcgcctacct caattacgac cgcgagaagg
     2761 gtcgcctgct gagcctggac gagatgttgc tgccggacgg gcaggccgac ttctggcggc
     2821 aggccgagct ggcgcaccag gcctggctca aggccaacgg cctggaccag gacttggatt
     2881 accaggccaa ctggccgttc gagcgcaccg ccaatgtggc cctgctgcgc ggcgtggtga
     2941 tgctcaagta cgaggtcggc cgcatcgcgc cctacgccag cggccatccc gagctgcgca
     3001 ttccctattc gcgcctgaac ggcgtgctca agcccgccta ctttccgggg cgtggctgag
     3061 cggctcgact ggcgtaatag cggcgcgcag cgcacgctgt gaatgaaaaa gccggggcat
     3121 gccccggctt ttctgtgtga cggccgctcg atcagacctg cttgtagatc accgaaccct
     3181 cacccttgaa gcgctcggcc tgttcggcga agccggcctc gatagccttc tgctcgtcgg
     3241 tcaggccgtt gtccttggcg tagtcgcgta cttcctgggt gatcttcatc gagc
//
LOCUS       DATIHC010000641         2686 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17220, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000641 DATIHC010000000
VERSION     DATIHC010000641.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2686
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17220"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..207
                     /locus_tag="VLF16_10650"
     CDS             <1..207
                     /locus_tag="VLF16_10650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HSX71380.1"
                     /translation="LLIFGMGPFRIGDVVELLDVADKPGIKGRVLGVNLFYTTLEDQG
                     PEASGGLLQVPNSLFFQKAVRRWR"
     gene            281..913
                     /gene="rhtB"
                     /locus_tag="VLF16_10655"
     CDS             281..913
                     /gene="rhtB"
                     /locus_tag="VLF16_10655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine/homoserine lactone efflux protein"
                     /protein_id="HSX71381.1"
                     /translation="MALETWLAFFVACWVISLSPGAGAIASMSSGLQYGFWRGYWNAL
                     GLQIGLALQIAVVAAGVGAILSASATAFAAIKWFGVAYLVWLAIKQWQALPGDLDAGS
                     AERPLGRPLTLVLRGFLVNASNPKAIVFMLAVLPQFLDPHQPLLAQYLIMGVTMIVVD
                     LIVMAGYTGLAARVLRALRTPRQQRLMNRTFAALFVGAAALLATVRRAPV"
     gene            1028..>2686
                     /locus_tag="VLF16_10660"
     CDS             1028..>2686
                     /locus_tag="VLF16_10660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004373368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0033573 - high-affinity iron permease
                     complex [Evidence IEA];
                     GO_function: GO:0005381 - iron ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0034755 - iron ion transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family protein"
                     /protein_id="HSX71382.1"
                     /translation="MSRSLFAWLCLPLLALCSLFALAEPGDGAIQALHLLGYLGADYP
                     ATVSAGQVVDPAEYREQLEFAGVLQGLIVALPAKAGRDELEQGVQHLRRDIDARAEGA
                     AVATNARQLAARLAELYQVRLTPAITPDPSRGAPLYAQHCAVCHGDTGSGDGPAGLGL
                     EPPPANLGDAARMDHLSLYDLFNTLGLGIEGTDMPAFADQLDERERWDLASYIAGFTA
                     APATGAKTFAMAELAGSTPAEIAAGGGDVAAFRAQRAQPPQVQRGPAELIEHTRVTLE
                     QSLAAYREGNVEQAYDLSVGAYLEGFELVESALDNLDAAQRKTTERALMAYRQALQDG
                     ASVSQAAQALELAKAELATSAALLADGAMNASLSFLSSVLILLREGLEAILVLAAILA
                     FLRNTGQQAAARSVHVGWGLALLAGVATWAVAAYLIDISGAQRELLEGATALFASVVL
                     LWVGVWMHDRRHAAAWQDYIKSSLVGGGGRFGFAVLAFFSVYRELFEVILFYETLWLQ
                     AGPAGHGMVLAGAAAALVLLLGLAWVILKGSRKLPLAAFFSANAV"
BASE COUNT          355 a          959 c          909 g          463 t
ORIGIN      
        1 ctgctgatct tcggcatggg gccgttccgc atcggcgacg tggtcgagct gctcgacgtg
       61 gccgacaagc ccggcatcaa aggcagggtg ctcggcgtga acctgttcta caccaccctc
      121 gaagaccagg gccccgaggc cagcggcggc ctgctgcagg tgcccaacag cctgttcttc
      181 cagaaggccg tgcgccgctg gcgctgacgg gctggccggc ggtgcgacgg aggggtaggc
      241 tgttcggcct gccccttttc gcttttccga ggtactcacc atggctcttg aaacctggct
      301 cgctttcttc gtcgcctgct gggtgatcag cctgtcgccg ggcgccggcg ccatcgcctc
      361 aatgtccagc ggcctgcagt acggcttctg gcgcggctac tggaacgccc tgggtctgca
      421 gatcggcctg gccctgcaga tcgccgtcgt cgccgccggc gtcggcgcca tcctctccgc
      481 ctcggctacc gccttcgccg ccatcaagtg gttcggcgtc gcctacctgg tgtggctggc
      541 gatcaagcag tggcaggccc tgccgggcga cctcgacgcc ggctccgccg agcgtcccct
      601 cggtcgcccg ctgaccctgg tactgcgcgg ctttctggtc aacgccagca acccgaaggc
      661 gatcgtcttc atgctcgccg tgctgccgca gttcctcgac ccgcaccagc cgctgctggc
      721 ccagtacctg atcatgggtg tgaccatgat cgtggtcgac ctgatcgtca tggccggcta
      781 caccggcctc gccgcccgcg tgctgcgcgc cttgcgcaca ccgcgccagc agcgcctgat
      841 gaatcgcacc ttcgccgcgt tgttcgtcgg tgccgcggcg ctgctggcta ccgtgcggcg
      901 cgcgccggtc tgagctcgtc gaacggactg ttcgacgagc tgtaaccgaa tatttccgat
      961 tttgcttgag agaaatcgtt agctaggcaa caattcaatg ccattcattc tcatttggaa
     1021 tgcattgatg tcgcgatctc tctttgcctg gctgtgcctg cccctgctgg cgctgtgcag
     1081 cctgttcgcc ctggccgaac cgggcgatgg cgcgatccag gccctgcacc tgctgggcta
     1141 cctgggcgcc gactatcccg ccaccgtgag cgccggccag gtggtcgacc ccgccgaata
     1201 ccgtgagcag ctggagttcg ccggcgtgct gcagggcctg atcgtcgcat tgccggccaa
     1261 ggccggacgt gacgagctgg agcagggcgt gcagcacctg cgccgcgata tcgacgcccg
     1321 cgccgagggt gccgccgtcg ccaccaatgc ccgccagctg gccgcacgcc tggccgagct
     1381 gtaccaggtg cgcctgaccc cggcgatcac tcccgacccc agccgcggcg cgccactgta
     1441 cgcccagcac tgcgccgtct gccacggtga cacggggtcc ggcgacggtc cggcgggtct
     1501 gggcctggag ccgccgccgg ccaacctggg cgatgccgcg cggatggatc acctgagcct
     1561 gtacgacctg ttcaacacgc tggggctggg catcgaaggc accgacatgc cggccttcgc
     1621 cgaccaactg gacgagcgcg agcgctggga cctggcgagc tacatcgccg gctttaccgc
     1681 cgcgcccgcc accggtgcca agaccttcgc catggccgag ctggccggaa gcacgcccgc
     1741 cgagatcgcc gccggcggcg gcgacgtcgc cgcgttccgt gcccagcgcg cccagccgcc
     1801 gcaggtgcag cgtggcccgg ccgagctgat cgagcacacc cgcgtcactc tggagcagag
     1861 cctggcggcg taccgcgagg gcaacgtcga acaggcctac gacctgtccg tcggcgccta
     1921 tctggagggc ttcgagctgg tcgagagcgc cctggacaac ctcgacgcgg cccagcgcaa
     1981 gaccaccgag cgcgcgctga tggcctaccg tcaggcactg caggacggcg ccagcgtgtc
     2041 ccaggcggcg caggcgctgg agctggccaa ggccgagctg gccacgtccg cggcgctgct
     2101 ggccgatggc gcgatgaacg cctcgctgag cttcctctcc agcgtgctga tcctgctgcg
     2161 cgaggggctg gaggcgatcc tggtgctggc ggcgatcctc gccttcctgc gcaacaccgg
     2221 ccaacaggcc gcggcgcgca gcgtgcacgt cggctggggc ctggcgctgc tggccggtgt
     2281 cgccacctgg gcggtcgcgg cgtacctgat cgacatcagc ggcgcccagc gcgaactgct
     2341 ggagggcgcc accgcgctgt tcgccagcgt ggtgctgttg tgggtcggcg tgtggatgca
     2401 cgaccgtcgt cacgcggcgg cctggcagga ctacatcaag agcagtctgg tcggcggtgg
     2461 cggccgcttc ggcttcgccg tgctggcctt tttctcggtg taccgcgagc tgttcgaggt
     2521 catcctgttc tacgaaaccc tatggctgca ggcaggcccg gccggtcacg gcatggtcct
     2581 ggccggcgcg gccgcggcgt tggtgctgct gctcggcctg gcctgggtga ttctcaaggg
     2641 ctcgcgcaag ttgccgctgg ccgcgttctt cagcgccaac gccgtg
//
LOCUS       DATIHC010000642         2684 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36789, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000642 DATIHC010000000
VERSION     DATIHC010000642.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2684
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36789"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1055)
                     /locus_tag="VLF16_10665"
     CDS             complement(<1..1055)
                     /locus_tag="VLF16_10665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSX71383.1"
                     /translation="MNKLKLVMVGNGMAGVRTLEELLRLAPDLYEITVFGAEPHPNYN
                     RILLSPVLAGEQTFDEIVLNGVDWYERHGIDLRLGRKVVAIDRKKRQVIADDGSTAQY
                     DRLILATGSNPFILPVPGNRLDGVIAYRDIADTETMMETARTHSHAVVIGGGLLGLEA
                     ANGLRQRGMDVTVVHLADWLLERQLDRTAGELLKQALEARGIRFRLREQTEELLDYGT
                     GRVCAVQFKSGDTIPADLVVMAAGVRPNTELAEKAGLPCNRGIQVDDCLQTYDPRIYA
                     VGECANHRGIAYGLVAPLYEQAKVCANHLAMLGTARYQGSVTSTKLKVTGIDLFSAGD
                     FMGGDGTESIILSDPIG"
     gene            complement(1333..>2684)
                     /locus_tag="VLF16_10670"
     CDS             complement(1333..>2684)
                     /locus_tag="VLF16_10670"
                     /EC_number="2.7.11.-"
                     /EC_number="3.1.3.-"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003240047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional protein-serine/threonine
                     kinase/phosphatase"
                     /protein_id="HSX71384.1"
                     /translation="LILRGRRFTLAHVGDCRAYRLHHGQLERLSEDHVWEQPGMQHVL
                     KRALGLDQHLVVDYLEGELREGERYLLVSDGVWSTLGDAGIRSLLLDESDPAAACQAL
                     VAAAHLAGSQDNASAVLVQVDALPDNDLADTLAQLQQWPLPPKLREGQEFEGWQIERV
                     LAESRQSLVYRVRDGQARRWLLKTLPASRHDEAQAGPALLLEEWFLRRVAGRHFPEAH
                     PLPQRQHLYYVQREYAGQTLAEHLRLSGPLGLPEWLDLAPRLLKALGLLHRRNILHRD
                     IKPENLLWCDDGELRLLDFGLAYCPGLSRDEQHALPGTPSYIAPESFAGAAPDRQQDL
                     YAAGVTLYRLLTGHYPYGEIEAFQHPRFGSPAAPSRYRPDLPAWLDDCLLRAVATDPA
                     ARFETAEEWLLALEHGERQALSVRPRPLLEREPLKVWRGMALASLLANLVLLVLWLN"
BASE COUNT          388 a          880 c          978 g          438 t
ORIGIN      
        1 ctgccgatgg ggtcggagag gatgatgctc tcggtgccgt cgccgcccat gaagtcgccg
       61 gcggagaaca ggtcgatgcc ggtgaccttg agcttggtcg aggtcaccga gccctggtag
      121 cgggcggtac cgagcatggc caggtggttg gcgcagacct tggcctgctc gtacagcggc
      181 gcgaccagcc cataggcgat gccgcggtgg ttggcgcatt cgccgaccgc gtagatgcgc
      241 gggtcgtagg tctgcaggca gtcgtcgacc tggatgccgc ggttgcaggg caggccggcc
      301 ttctccgcca gttcggtatt ggggcgcacg ccggcggcca tcaccaccag gtcggcggga
      361 atggtgtcgc cactcttgaa ctgcacggcg cagacgcggc cggtgccgta gtcgagcagc
      421 tcctcggtct gttcgcgcag gcggaagcgg atgccgcggg cctccagcgc ctgtttcaga
      481 agttcgcccg cggtgcggtc cagttggcgt tccagcagcc agtcggccag gtgcaccacg
      541 gtcacgtcca tgccgcgctg gcgcaggccg ttggccgctt ccaggccgag caggccgccg
      601 ccgatcacca cggcgtggct gtgggtgcgg gcggtctcca tcatcgtctc ggtgtcggcg
      661 atgtcacggt aggcgatcac gccgtccagg cggttgcccg gcacgggcag gatgaacgga
      721 ttggacccgg tagccagaat cagccggtcg tactgggcgg tactgccgtc atcggcgatc
      781 acctggcgct tcttgcggtc gatggcgacc accttgcggc ccaggcgcag gtcgatgccg
      841 tggcgctcgt accagtcgac gccattgagc acgatctcgt cgaaggtctg ttcgccggcc
      901 agcacggggg agagcaggat gcggttgtag ttgggatgcg gctcggcgcc gaacaccgtg
      961 atctcgtaca gatcgggggc gagccggagc agctcctcca gggtcctgac cccggccatg
     1021 ccgttgccta ccatcaccag cttgagcttg ttcatgccgg ccatctcctg cgtaaaaatc
     1081 gtgagcaaca aaaaaggcgt cccgctagct gcctagcgag gacgcctttg tcctggtccc
     1141 gatctgtcgg gaggcagcac cttcaacgtt gagggcactg ccgttatgta gtctcgaggt
     1201 ctgtttttgc aggtgccgtg ccaagtcatc aaagccgcgg ctgacgcggt ctgggttggt
     1261 gcttctggcg ctttcagcct cgctaatcgc acccctttaa ggcgactcgc gcccttgtgg
     1321 tgcaccgctg cgctagttca gccacagcac cagcaacacc aggttggcca gcagcgaggc
     1381 gagggccatg ccgcgccaga ccttcagcgg ctcacgctcg agtagcggcc gcggtcgtac
     1441 gctgagcgcc tggcgctcgc cgtgctccag ggccagcagc cattcctcgg cggtctcgaa
     1501 gcgcgccgcg gggtcggtgg ccacggcgcg cagcaggcag tcgtcgagcc aggccggcag
     1561 atcggggcgg taacggctgg gcgccgccgg gctgccgaag cgcggatgct ggaacgcctc
     1621 gatctcgccg taggggtagt ggccggtgag cagccggtag agcgtgacgc cggcggcgta
     1681 gaggtcctgc tggcggtccg gggcggcgcc ggcgaaggac tccggggcga tgtagctggg
     1741 cgtgccgggc agggcgtgct gctcgtcgcg ggacaggccg gggcaatagg ccaggccgaa
     1801 gtcgagcaga cgcagctcgc cgtcgtcgca ccagagcagg ttctccggct tgatgtcgcg
     1861 gtgcaggatg ttgcgccggt gcagcaggcc tagggccttg agcaggcgcg gcgccaggtc
     1921 cagccactcc ggcaggccca gcgggccgct caggcgcagg tgctcggcca gggtctggcc
     1981 ggcgtattcg cgttgcacgt aatacaggtg ctggcgctgt ggcagcggat gcgcttcggg
     2041 gaagtggcgg ccggccacgc ggcgcaggaa ccattcctcc agcagcaatg ccgggccggc
     2101 ctgggcctcg tcgtggcggc tggccggcag ggtcttcagc agccagcgtc gtgcctggcc
     2161 atcgcgcacc cggtagacca gcgactggcg cgactcggcc agcacccgct cgatctgcca
     2221 gccctcgaac tcctggccct cgcgcagctt gggcggcaac ggccactgct gcagctgggc
     2281 cagggtatcg gccaggtcgt tgtccggcag cgcgtcgacc tgcaccagca cggcgctggc
     2341 gttgtcctgg ctgccggcca ggtgagccgc agccaccagc gcctggcagg cggcggccgg
     2401 gtcgctctcg tccagcagca ggctgcggat gccggcgtcg cccagggtcg accagacgcc
     2461 atcgctgacc agcaggtagc gctcgccctc gcgcagctcg ccctccaggt agtcgaccac
     2521 cagatgctgg tccaggccca gggcgcgctt gagcacgtgc tgcatgcccg gctgctccca
     2581 cacatggtcc tcgctgaggc gttccagctg gccgtggtgc aggcggtagg cacggcagtc
     2641 accgacatgc gccagggtga agcggcggcc gcgcaggatc aggg
//
LOCUS       DATIHC010000643         1624 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36790, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000643 DATIHC010000000
VERSION     DATIHC010000643.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1624
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36790"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..514)
                     /locus_tag="VLF16_10675"
     CDS             complement(<1..514)
                     /locus_tag="VLF16_10675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016495457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HSX71385.1"
                     /translation="MPRSTPSADKILDTALDLAEACGWERLHLHDVAAALNCDLGAIA
                     RHYGQKDDLVEAWLDRADRALFERAGSPDLAALSPAKRLEELLVAWLGGMAAHRALTG
                     QMLLYKLELGHLHLQAGALLRVSRTVQWWREAARRQNLHLSRVAEESMLSAVFLRTFV
                     HWLRNPDRDAA"
     gene            complement(583..>1624)
                     /locus_tag="VLF16_10680"
     CDS             complement(583..>1624)
                     /locus_tag="VLF16_10680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HSX71386.1"
                     /translation="RFFERAEIKNAVAYLRLLDGRHNDAALERVINVPTRGVGEKTVE
                     AIREHARHADLSMWAAMQQLIAAKALPGRAAGALAGFVELIENLSAKVLDMPLHLMTQ
                     TVIEQSGLIAWHQAEKGEKGQARVENLEELVSAARNFENTEDDELSPLAAFLTHASLE
                     AGDTQAEEHEDCVQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSLEEPGRLEEERRLA
                     YVGVTRAMQQLVLTYAETRRLYGSETYNKVSRFVREIPPLLIQEVRLSNSVSRPYSAP
                     TTTMSGGSMFSGAAVPETPFSLGQAVRHSLFGEGVILNFEGSGAQARVQVNFAGEGSK
                     WLMLAYAKLEAV"
BASE COUNT          220 a          565 c          575 g          264 t
ORIGIN      
        1 cggcggcgtc ccggtccggg ttgcgcagcc agtgcacgaa ggtgcgcagg aacacggcgc
       61 tgagcatgct ctcctcggcc acccgcgaca ggtgcaggtt ctgccgccgc gccgcctcgc
      121 gccaccactg cacggtgcgg ctgacccgca gcagcgcgcc ggcctgcaga tggaggtgcc
      181 cgagttccag cttgtacagc agcatctgcc cggtcagcgc gcggtgcgcg gccatgccgc
      241 cgagccaggc gaccagcagc tcctccagac gcttggccgg gctcagcgcg gccaggtcgg
      301 ggctgccggc gcgctcgaac agcgcgcggt cggcccgatc cagccaggcc tcgaccagat
      361 cgtccttctg tccgtagtgg cgggcgatgg cgcccaggtc gcagttcagc gccgcggcca
      421 catcgtgcag gtgcaggcgc tcccagccgc aggcttcggc caggtcgagg gcggtatcga
      481 ggatcttgtc ggcggatggc gtcgagcggg gcatgcgcag tacctccgct cgacagtatg
      541 gccagccagg acggcgactc ggcgcggcct gaccggcggc gactacaccg cttccagctt
      601 ggcgtaggcc agcatcagcc acttgctgcc ttcgccagcg aagttgacct gcacccgcgc
      661 ctgggcgccg ctgccttcga agttgaggat cacgccttcg ccgaacaggc tgtggcgcac
      721 ggcctggccg agactgaagg gcgtctccgg gacggcggcg ccgctgaaca tggagccgcc
      781 gctcatggtc gtggtcggcg ccgagtacgg tcggctgacg ctgttggaca ggcgcacttc
      841 ctggatcagc agtggcggga tctcgcggac gaagcgcgag accttgttgt aggtctcgct
      901 gccgtacagg cggcgggtct cggcgtaggt cagcaccagc tgctgcatgg cgcgggtgac
      961 gccgacgtac gccaggcgcc gctcctcttc gagacggccg ggctcttcca ggctcatctt
     1021 gtgcgggaac aggccttcct ccatgccgac cagaaacacc agcgggaact cgaggccctt
     1081 ggcactgtgc agggtcatca gctgcacgca gtcctcgtgc tcctcggcct gggtgtcgcc
     1141 ggcctccagc gaggcgtggg tgaggaaggc ggccaggggc gacagttcgt cgtcctcggt
     1201 gttctcgaag ttgcgcgcgg cgctgaccag ttcctccagg ttctccaccc gcgcctggcc
     1261 cttctcgccc ttctcggcct ggtgccaggc gatcagcccg ctctgctcga tgacggtctg
     1321 ggtcatcagg tgcagcggca tgtccagcac cttggcgctc aggttctcga tcagctcgac
     1381 gaagccggcc agcgcgccgg cggcgcggcc gggcagggcc ttggcggcga tcagctgctg
     1441 catggccgcc cacatcgaca ggtcggcgtg gcgggcgtgc tcgcggatcg cctcgacggt
     1501 cttctcgccc acgccgcggg tcggcacgtt gatcacccgc tccagcgcgg cgtcgttgtg
     1561 gcgtccgtcg agcaggcgca ggtaggccac ggcgttcttg atctcggcgc gctcgaagaa
     1621 gcgc
//
LOCUS       DATIHC010000644         4014 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11093, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000644 DATIHC010000000
VERSION     DATIHC010000644.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4014
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11093"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..684)
                     /locus_tag="VLF16_10685"
     CDS             complement(<1..684)
                     /locus_tag="VLF16_10685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004657356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine synthase"
                     /protein_id="HSX71387.1"
                     /translation="MSDLREEILLEEVRDAWGVVRVLEVGDYRFLEFGEAIEQSCTYT
                     RDPAWLEYDYTRAMLIGALCHEAPESALFLGLGGGTLTQACLQFLELDDVEIIELRPE
                     VPRLAMQYLGLADDPRLTVRIGDALELLDSAETADLIFVDLYTDTGPAVGHLAWRFLE
                     NCQKRLNPGGWLVINQWGTDDGRPLGAALLRGLYHRHYWEIPVKEGNVILLVPADLDQ
                     PLDVAALTAP"
     gene            complement(681..1649)
                     /locus_tag="VLF16_10690"
     CDS             complement(681..1649)
                     /locus_tag="VLF16_10690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017516525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSX71388.1"
                     /translation="MSSTPSVTVHYTQAILQAAERLALPLPAELRAPSHETRIPLARQ
                     DALWEAFCAAAGDPLIGLRLGNALQVGHLDMVGALLMSCETLGEALEALLEYYPIVGE
                     GGEFALSEEGAQLRLTYQPHYDVRREERVEAVLASLAHLTRWITGERVQPLELQFGHA
                     PRAAEAPYIEMLGCPLEFSAADNALLFDRADLAVPLIQANAPMREHLRGLANSLLERL
                     GQQSLAVRVQQQLRAQPRWGKERVAEQLELSGRHLNRKLAEEGTSFKLLRDQVLHQMA
                     EQRLRESARMADVAEGLGFSDESAFAKAFRRWSGMTPGQFRQGLGQ"
     gene            1796..3133
                     /locus_tag="VLF16_10695"
     CDS             1796..3133
                     /locus_tag="VLF16_10695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010488760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HSX71389.1"
                     /translation="MHAIIGAGPMGLAAARQLQRHGIPFVGFELHSDVGGLWDITNPH
                     STMYESAHLISSKGTTAFAEFPMPDAVPSYPHHRQIGQYFRDYAEHFGLRQHYQFDTR
                     VVRLERLSQGWRLVSEQDGTLREWQFEGVLIANGTLHTPNQPALPGRFTGELLHASAY
                     KNAELFADKRVLVIGCGNSACDIAVDAVHRAQSVDLSVRRGYHFLPKFILGKPTDTFG
                     GAIKLPRRLKQLVDGLLVRALLGKPSQYGLPDPEYRLYESHPVMNSLVLHHIGHGDIQ
                     PRGDIRAVDGKRVTFANGDSAEYDLILQATGYKLDYPFIDRSELNWPLEADAPQLYLN
                     VFHPLHDDLFMLGMIEASGLGWQGRAEQAELVALTILQQQRNSASARRLRDIVLERSS
                     QRLDGGYAYLKLPRMAYYVHKDSYRAALKAHIAELRRDLTTTTEERLDVQRQS"
     gene            3114..>4014
                     /locus_tag="VLF16_10700"
     CDS             3114..>4014
                     /locus_tag="VLF16_10700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010488763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
                     /protein_id="HSX71390.1"
                     /translation="MSSVNLEFSPTAMIALNAIIALMMFGVSLELRAGDFSRILRSPK
                     APVIGMLVQFLLLPAATCGLTLLLPIEPELALGMILVATCPSGTFSNIMTWLARGNVA
                     VSASVTAVSSLTAGIFTPLNFALYAGLNPNTRALLTEIHVEPLDLLAMVILVLILPML
                     AGMALGKRRPLLARKLEKPLRHFSLLVLLAFVGGALVKNFDQFIEHFHLFFWLVVTLN
                     AMALVLGYLCARLWRLSDADVRAVTLESGIHNSALGMALIFTFFPQSGGMLLIAAFWG
                     CWQLLAGLALALLWARRAPVGAVA"
BASE COUNT          611 a         1429 c         1310 g          664 t
ORIGIN      
        1 gggagccgtg agggcggcaa cgtccagcgg ctggtcgaga tcggccggca ccagcaggat
       61 gacgttgccc tccttcaccg gaatctccca gtaatggcgg tggtacaggc cgcgcagcag
      121 cgccgcgccg agcgggcggc catcgtctgt gccccactgg ttgatcacca gccagccacc
      181 ggggttgagg cgcttctggc agttctccag aaagcgccag gccaggtggc cgaccgccgg
      241 gccggtgtcg gtgtacaggt cgacgaagat caggtccgcc gtctcggcac tgtcgagcag
      301 ctccagggcg tcgccgatgc gcacggtcag gcgcgggtca tccgccagcc ccaggtactg
      361 catggccagg cgcggcacct cggggcgcag ctcgatgatt tcgacgtcat ccagctcgag
      421 aaactgcaga cacgcctggg tcagggtgcc gccgcccagg ccgaggaaca gcgccgactc
      481 cggcgcctcg tggcacagcg cgccgatcag catggcgcgg gtgtagtcgt attccagcca
      541 ggccgggtcg cgggtatagg tgcagctctg ctcgatggcc tcgccgaact cgaggaagcg
      601 gtagtcgccg acctccagca cgcgcaccac gccccaggca tcgcgcacct cttccagcag
      661 gatttcttcg cgcaggtcgc tcattggccg agcccctggc ggaactggcc gggcgtcatg
      721 ccgctccagc ggcggaaggc cttggcgaag gcgctctcgt cggagaagcc gaggccctcg
      781 gcgacgtctg ccatgcgcgc cgactcgcgc aggcgctgct cggccatctg gtgcagcacc
      841 tggtcgcgca acagcttgaa gctggtgccc tcctcggcca gcttgcggtt caggtggcgc
      901 ccgctcagct ccagctgctc ggcgacacgc tccttgcccc agcgcggctg ggcgcgcagc
      961 tgctgttgca cgcgcaccgc caggctctgc tggccgaggc gctcgagcag gctgttggcc
     1021 aggccgcgca gatgctcgcg catcggcgca ttggcctgga tcagcggcac ggccaggtcg
     1081 gcgcggtcga acagcaacgc gttgtccgcc gcggagaact ccagcgggca accgagcatt
     1141 tcgatataag gcgcttcggc ggcccgcggg gcatggccga actgcagctc cagcggctgc
     1201 acgcgctcgc cggtgatcca gcgggtcaag tgcgccaggc tggccagcac cgcttccacc
     1261 cgctcctcac ggcgtacgtc gtaatgcggc tggtaggtca ggcgcagctg ggcgccctcc
     1321 tcgctcaggg cgaactcgcc gccctcgccg acgatggggt agtactccag cagcgcctcc
     1381 agcgcctcgc ccagggtctc gcagctcatc agcagcgcgc cgaccatgtc caggtggccg
     1441 acctgcaggg cgttgcccag gcgcaggccg atcagcgggt cgccggcggc ggcgcagaag
     1501 gcctcccaca gggcgtcctg acgggccagc ggaatgcgcg tctcgtgact cggcgcgcgc
     1561 aactcggccg gcagcggcag agccaggcgc tcggcggcct ggaggatggc ctgggtgtag
     1621 tggacggtaa cggaaggcgt gctgctcatg ggtcccgaat taaccggcga aggtcctgat
     1681 tgagccgtta cggcgaaggg tcggctgcct atgctggggc cagataacga ggctgcgcgc
     1741 gacaggcccg cgttgtacca cgccaacgca gcgcagccca tagagagagc cttgcatgca
     1801 tgccatcatc ggtgccggcc ccatggggct ggccgctgcg cgccagttgc agcgccatgg
     1861 tatccccttc gtcggcttcg agctgcatag cgatgtcggc ggcctgtggg atatcaccaa
     1921 tcctcacagc acgatgtacg aatcggcgca cctgatctcg tcgaaaggca ccaccgcctt
     1981 cgccgaattc cccatgccgg acgcggtgcc gtcctaccct caccatcgcc agatcggcca
     2041 gtactttcgc gactacgccg agcacttcgg cctgcgccag cactaccagt tcgacacccg
     2101 cgtggtgcgc ctggaacgct tgagccaggg ctggcgcctg gtcagcgagc aggacggcac
     2161 gctgcgcgag tggcagttcg agggcgtgct gatcgccaac ggcaccctgc acacgccaaa
     2221 ccagccggcg ctgcccggtc ggtttactgg ggagctgctg cacgcctcgg cctacaagaa
     2281 cgccgagctg ttcgccgaca agcgcgtgct ggtaatcggc tgcggcaact cggcctgcga
     2341 tatcgccgtg gatgccgtgc accgcgccca gtcggtggac ctgtcggtgc gccgcggcta
     2401 ccacttcctg cccaagttca tccttggcaa gcccaccgac accttcggcg gcgcgatcaa
     2461 actgccacgc cggctcaagc agctggtcga cggcctgctg gttcgtgccc tgctcggcaa
     2521 gccctctcag tacggcctgc ccgacccgga ataccgcctg tacgagtcgc acccggtgat
     2581 gaactcgctg gtgctgcatc acatcggcca cggcgatatc cagccgcgcg gcgacattcg
     2641 cgcggtggac ggcaagcggg tgaccttcgc caacggcgac agcgccgagt acgacctgat
     2701 cctgcaggcc accggctaca agctggacta cccctttatc gaccgttccg agctgaactg
     2761 gccgctggag gccgacgccc cgcagctcta cctcaatgtg ttccacccgc tgcacgacga
     2821 cctgttcatg ctcggcatga tcgaggcctc gggcctgggt tggcagggcc gcgccgaaca
     2881 ggccgaactg gtcgccctga ccattctcca gcagcagcgc aacagcgcct cggccaggcg
     2941 cctgcgcgac atcgtgctgg agcgctccag ccagcgcctg gacggcggct acgcctacct
     3001 caagctgccg cggatggcct actacgtgca caaggacagc taccgcgccg cactcaaggc
     3061 gcatatcgcc gagctgcgcc gcgacctcac caccacgacc gaggagcggc tcgatgtcca
     3121 gcgtcaatct tgagttctcg cccacggcga tgatcgccct caacgcgatc atcgcgctga
     3181 tgatgttcgg cgtgtccctg gagctgcgcg ctggcgactt cagccgcatc ctgcgttcgc
     3241 ccaaggcgcc ggtgatcggc atgctggtgc agttcctgtt gctgccggcg gccacctgcg
     3301 ggctgacgtt gctgctgccg atcgagccgg agctggccct gggcatgatc ctggtcgcca
     3361 cctgccccag cggcaccttc tccaacatca tgacttggct cgcgcgcggc aacgtcgccg
     3421 tgtccgccag cgtcaccgcc gtgtccagcc tgaccgccgg catcttcacc ccgctcaact
     3481 tcgccctgta cgccgggctc aatcccaaca cccgcgccct gctcaccgag atccatgtcg
     3541 agccgctgga cctgctggcc atggtgatac tggtgctgat cctgccgatg ctcgccggca
     3601 tggccctggg caagcgccgt ccgctgctgg cgcgcaagct ggagaagccg ctacggcact
     3661 tctccctgct ggtgctgctg gccttcgtcg gcggcgcctt agtgaagaac ttcgaccagt
     3721 tcatcgagca cttccacctg ttcttctggc tggtagtgac gctcaatgcc atggccctgg
     3781 tgctcggcta cctgtgcgcc cgcctgtggc gcctgagcga cgccgacgtg cgcgcggtga
     3841 ccctggagag cggcatccac aactcggccc tgggcatggc gctgatcttc accttcttcc
     3901 cgcagtccgg cggcatgctg ttgatcgccg cgttctgggg ttgctggcaa ctgctggccg
     3961 gtctcgcgct ggccctgctg tgggcgcgtc gtgctccggt cggcgccgtg gccg
//
LOCUS       DATIHC010000645         1506 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4091, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000645 DATIHC010000000
VERSION     DATIHC010000645.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1506
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4091"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..400)
                     /gene="surE"
                     /locus_tag="VLF16_10705"
     CDS             complement(<1..400)
                     /gene="surE"
                     /locus_tag="VLF16_10705"
                     /EC_number="3.1.3.5"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004879068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008253 - 5'-nucleotidase activity
                     [Evidence IEA];
                     GO_function: GO:0008254 - 3'-nucleotidase activity
                     [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HSX71391.1"
                     /translation="MRILISNDDGVMAPGIAALHGALQDYAECTIVAPTEDKSGASSS
                     LTLDRPLHPATMPNGYIGLNGTPTDCVHLGLNGLLEQVPDMVVSGINLGANLGDDVLY
                     SGTVAAALEGRFLAKPAFAFSLVSRRTDNLA"
     gene            complement(388..1446)
                     /gene="truD"
                     /locus_tag="VLF16_10710"
     CDS             complement(388..1446)
                     /gene="truD"
                     /locus_tag="VLF16_10710"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011535253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HSX71392.1"
                     /translation="MTELELLGPRAHGEACGQAVLKATAEDFQVDEVLDIPLSGNGEH
                     LWLWVEKRGLNTEEAARRLARAAGVSQRNISYAGLKDRQALTRQWFSLHLPGKADPDL
                     SAAEGETLAILKAVRHSRKLQRGAHSANGFTLRLTSLTADRDVLEQRLQRIREQGVPN
                     YYGLQRFGWQGGNVADARAFAERSELPEQRNTRSRLLSSARSHLFNRALAARVADGSW
                     NQARVGDLLAFTDSRSFFMAGESECSDPRLAILDLHPTGPLWGEGSSPAGGAAQALEQ
                     GVAEAEPALAAWLAKAGMAHERRILRLPIAELTWHYPEPEIVQLQFVLPAGCFATAVV
                     RELVDLLPAGQTDSPCEF"
BASE COUNT          240 a          509 c          521 g          236 t
ORIGIN      
        1 tggcgagatt gtcggtacgc cgcgacacca gcgagaaggc gaaggccggc ttggccagga
       61 aacgcccttc gagggcggcg gccacggtgc cggaatagag cacgtcatcg ccgaggttgg
      121 cgcccaggtt gatgcccgac accaccatgt ccggcacctg ttcgagcaag ccgttgaggc
      181 ccaggtgcac gcagtcggtc ggtgtgccgt tgaggccgat atagccgttg ggcatggtcg
      241 ccggatgcag cgggcggtcc agggtcagcg agctgctggc gccgctcttg tcctcggtcg
      301 gcgcgactat ggtgcactcg gcgtagtcct gcagcgcgcc atgcagcgcg gcgataccgg
      361 gcgccatcac cccgtcgtcg ttggaaatca gaattcgcat ggagagtccg tctgccctgc
      421 cggcagcaaa tcgaccagtt cgcgcaccac ggcggtggcg aagcaaccgg ccggcaggac
      481 gaattgcaat tgcactatct cgggctcggg ataatgccac gtcagttcgg caatggggag
      541 gcgcaggatg cgccgttcgt gcgccatgcc cgccttcgcc aaccaggcgg ccagcgcagg
      601 ctcggcctcg gcaacgccct gctccagcgc ctgcgcggca ccgcctgccg gagaagaacc
      661 ttcgccccac agcggcccgg tcggatgcag atcgagaatg gccaggcgcg ggtcgctgca
      721 ctcgctctcc ccggccatga agaagctgcg gctgtcggtg aaggccagca ggtcgccgac
      781 ccgcgcctgg ttccagctgc cgtcggccac ccgcgcggcc agcgcacggt tgaacagatg
      841 gctgcgcgcc gacgagagca gacgcgagcg ggtgttgcgt tgttccggca actcgctgcg
      901 ttcggcaaag gcgcgcgcat cggccacgtt gccgccttgc cagccgaagc gctgcagacc
      961 gtagtagttg ggcacgccct gctcgcggat gcgctgcagg cgttgctcca gcacgtcacg
     1021 gtcggccgtc agactggtca ggcggagggt aaaaccgttg gccgaatggg cgccgcgctg
     1081 cagtttgcgt gaatggcgca cggccttgag gatcgccagg gtctcgcctt cggcggcgga
     1141 cagatccgga tcggccttgc ccggcaggtg caggctgaac cactggcggg tcagcgcctg
     1201 gcggtccttc agcccggcgt agctgatatt gcgctgcgac actccggccg cgcgggccag
     1261 gcgacgcgcc gcctcctcgg tattgaggcc gcgcttctcc acccacagcc acaggtgctc
     1321 gccattgccg gacagcggaa tgtccagcac ctcgtcgacc tggaagtcct cggcggtggc
     1381 cttgagcacg gcctggccac aggcctcgcc atgggcgcgc gggcccagca gttccagctc
     1441 ggtcatgctt taaccagcag cgccacggcg tgaaccgcga tgccttcctc acggccggtg
     1501 aaaccg
//
LOCUS       DATIHC010000646         3244 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4100, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000646 DATIHC010000000
VERSION     DATIHC010000646.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3244
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4100"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..801
                     /locus_tag="VLF16_10715"
     CDS             <1..801
                     /locus_tag="VLF16_10715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003295276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HSX71393.1"
                     /translation="ALSRQLAQLEAALGLRLLERTTRRLRLTEAGSEVFERCREMLGA
                     AEAAVAVGERLMSDARGQVRLSVPKAFGKYLVAPLMADFLARHPEVDVSLNLSDRSPD
                     PIAEGFDLIIRITEQPPEQMAGRPLCQVEHLLCATPQYLADHGTPQHPQDLVRHRCLY
                     LDERADDHRWHFAKDGEQCTVVVRGRFASNHSEVRLNGALDHLGIACLPSFTADEALA
                     DGRLVQVLGDWRYTGYYHGTAWALYPSNRHLPPKLRALIDHLAAGLAG"
     gene            complement(991..1557)
                     /locus_tag="VLF16_10720"
     CDS             complement(991..1557)
                     /locus_tag="VLF16_10720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003196187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HSX71394.1"
                     /translation="MSAALAVAELFALCRQQAQADYIGEAVSQLEHMVQAAELARDEG
                     ADEELILAAFCHDVGHFCVPPAAHNSMAGLGRQGHERVGARWLRGLGFSARLSGLVAL
                     HVEAKRYLCRREPGYLAALSPASLQTLSWQGGPMSEAQADAFERDPLFADSLRLRRWD
                     EAAKVPGRPAAELAWLEELALRVHAARS"
     gene            complement(1554..2711)
                     /locus_tag="VLF16_10725"
     CDS             complement(1554..2711)
                     /locus_tag="VLF16_10725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003196189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03364 family FAD-dependent oxidoreductase"
                     /protein_id="HSX71395.1"
                     /translation="MSQYDCDLLVVGAGMLGLAHAWAGAKRGLKVKVFERTATPLGAS
                     IRNFGQALVTGQAPGPMLDLARQAHGLWAELGKAAGLALKQQGSLVFARTEAEEAMLE
                     AFCAGRARELGYRVELLRGAALDGLYAGRFAHHRAALHGLDDQQLYSREALPQIVDHL
                     RGLGVEFHFSTLVRDVESGSALTTAGRFTARHILVCSGHDYQTLLAEPMAALKPSVCR
                     LQMLRARLERPLDLQHAVLTGLSCVHYGAFADLPEAEAIQAEIRRDYPALEQYGIHLL
                     VSPTPYGELIIGDSHDYGSDAAPFNAEDVDQLLISLAEHTLGGRLQVLERWQGVYGSR
                     GPGPFSVLRAAEGVTAVLMHTGLGMSVGLGLGERTIAALLGEGDWPVALPA"
     gene            complement(2903..>3244)
                     /locus_tag="VLF16_10730"
     CDS             complement(2903..>3244)
                     /locus_tag="VLF16_10730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014592747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative 2-aminoethylphosphonate ABC transporter
                     substrate-binding protein"
                     /protein_id="HSX71396.1"
                     /translation="VQLKRKGAPLDIVLPKEGLGWEIEATGIVKGTDQLDAAKKLADF
                     AASREAMELYKANFAVLAQPGIAERFQELPADYEQRLIKNDFAWASENRDKILAEWRK
                     RYDGKSEPVAQ"
BASE COUNT          468 a         1144 c         1167 g          465 t
ORIGIN      
        1 gcgctgagtc gccagctcgc ccagctggag gcggccctgg gcctgcgcct gctggaacgc
       61 accacccgcc gcctgcgcct gaccgaggcc ggcagcgagg tgttcgagcg ctgccgggag
      121 atgctcggcg ccgccgaggc cgccgtggcg gtgggcgagc gattgatgag cgatgcccgc
      181 ggccaggtgc gcctgtcggt gcccaaggcc ttcggcaagt acctggtggc gccgctgatg
      241 gcggactttc tcgccaggca cccggaggtc gacgtcagcc tcaacctcag cgaccgcagc
      301 cccgacccga tcgccgaggg gttcgacctg atcatccgca tcaccgagca gccgccggag
      361 cagatggccg gccggccctt gtgccaggtc gagcacctgc tgtgcgccac gccgcagtac
      421 ctggccgacc acggcacgcc gcaacacccg caggacctgg tacgccatcg ctgcctgtac
      481 ttggacgagc gcgccgacga ccaccgctgg cacttcgcca aggacggcga acagtgcacg
      541 gtggtcgtgc gcggccgctt cgccagcaac cacagcgaag tgcgcctcaa cggcgcgctc
      601 gatcacctgg gcatcgcctg cctgccgagc ttcaccgccg acgaggcgct ggcagacggc
      661 aggctggtgc aggtgctcgg ggactggcgc tacaccggct actaccacgg cacggcctgg
      721 gcgctgtacc cgtccaaccg ccacctgccg cccaagctgc gcgcactgat cgatcacctg
      781 gcggccgggc tggccggcta agtggtgtgc agccgtaggg tggacaaccg cgcagcgttg
      841 tccgccgtgg gcgcccatgg tggaaaaggc ctgcggccgt tttccaccct acgcagggcc
      901 gtcatgcagc gggttggggc gaaccgcgta agaggccgaa gcccagcagc ggcgtgtgag
      961 cccgttgggc ttcgttgcgc gcagcccagc ctacgacctc gcggcgtgca cgcgcagggc
     1021 cagctcttcc agccaggcca gctcggcggc gggacggccg ggcaccttgg ccgcctcgtc
     1081 ccagcggcgc aggcgcaggc tgtcggcgaa cagcggatcg cgctcgaagg catcggcctg
     1141 ggcctcgctc atcggcccgc cctgccagct cagcgtctgc aggctggccg ggctgagcgc
     1201 cgccagataa cccggttcac gccggcacag gtagcgcttg gcctcgacat gcagggccac
     1261 caggccgctg agccgcgcgg agaaacccag gccgcgcagc cagcgcgcgc cgacccgctc
     1321 gtggccctgg cggccgaggc cggccatgct gttgtgcgcc gccggcggca cgcagaagtg
     1381 gccgacgtcg tggcagaagg cggcgaggat cagctcctcg tcggcgccct cgtcgcgcgc
     1441 cagctcggcg gcctggacca tgtgttcgag ctggctgacc gcctcgccga tgtagtcggc
     1501 ctgagcctgc tggcggcaca gggcgaacag ctcggccacc gccagcgcgg cactcacgcc
     1561 ggcagcgcca cgggccagtc accctcgccg agcagcgcgg cgatggtgcg ctcgcccagg
     1621 ccgaggccca cgctcatgcc caggccggta tgcatcagca ccgcggtcac cccctcggcg
     1681 gcgcgcagca cgctgaacgg gccggggcca cgggagccgt acacgccctg ccagcgctcc
     1741 agcacctgca ggcgaccgcc cagggtgtgc tcggccagtg aaatcagcag ctggtcgacg
     1801 tcctcggcat tgaacggcgc ggcgtcgctg ccgtagtcgt gggagtcacc gatgatcagc
     1861 tcgccatagg gcgtcgggct gaccagcagg tggatgccgt attgctccag cgccgggtag
     1921 tcgcggcgga tctcggcctg gatcgcttcg gcctcgggca gatcggcgaa ggcgccgtag
     1981 tgcacgcagc tgagcccggt gagcacggcg tgctgcaggt ccagcgggcg ttccaggcgc
     2041 gcgcgcagca tctgcaggcg gcacaccgaa ggcttcagcg cggccatggg ttcggccagc
     2101 agggtctggt agtcgtgccc ggagcagacc aggatgtgcc gcgcggtgaa gcgcccggcg
     2161 gtggtcagcg cgctgccgga ttcgacatcg cggaccaggg tggagaagtg gaactcgacg
     2221 ccgaggccgc gcagatgatc gacgatctgc ggcagtgcct cgcgcgagta cagctgctgg
     2281 tcgtccagcc catgcagggc ggcgcggtgg tgggcgaaac ggccggcgta caggccgtcc
     2341 agggcggcgc cgcgcagcag ttcgacgcgg tagccgagct cacgcgcacg gccggcgcaa
     2401 aaggcttcga gcatggcctc ctcggcctcg gtgcgggcga ataccagcga gccctgctgc
     2461 ttcagcgcca ggcccgcggc cttgcccagc tcggcccaca gaccgtgggc ctggcgcgcc
     2521 aggtcgagca tcggccccgg cgcctggccg gtgaccagag cctggccgaa gttgcggatg
     2581 gaggcgccga gcggcgtggc ggtgcgctcg aagaccttga ccttgaggcc gcgcttggcg
     2641 ccggcccagg catgggcaag gccgagcatg ccggcgccga cgaccagcag gtcgcagtcg
     2701 tactgactca tggggaaact cctggaaatc tgtagcccgg atgcaatccg gggatgggtg
     2761 ttgcgggtgt cccggattgc atccgggcta cgggcaggtc tcccctcgcc cacttgtggg
     2821 agaggggcgt gttgtcgcgc cctctcccca ccctctccac taggcgtgcc cccgtaacgg
     2881 gggaggggcc atccgtgcag gcttattgcg ccaccggctc ggacttgccg tcgtagcgct
     2941 tgcgccactc ggcgaggatc ttgtcgcggt tttccgaggc ccaggcgaag tcgttcttga
     3001 tcaggcgctg ctcgtagtcg gccggcagct cctggaagcg ctcggcgatg cccggctggg
     3061 ccagtacggc gaagttggcc ttgtacagct ccatggcctc gcggctggcg gcgaagtcgg
     3121 cgagcttctt ggctgcgtcc agctggtcgg tgcccttgac gatgccggtg gcctcgatct
     3181 cccaacccag gccttccttg ggcagcacga tgtccagcgg cgcgcccttg cgcttgagct
     3241 gcac
//
LOCUS       DATIHC010000647         4843 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_32272, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000647 DATIHC010000000
VERSION     DATIHC010000647.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4843)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4843)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4843
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32272"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..660
                     /locus_tag="VLF16_10735"
     CDS             <1..660
                     /locus_tag="VLF16_10735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71397.1"
                     /translation="QLALTIKLYRAYRAGRLAVMMGQLAALRAGTALAGGWVGAVTLG
                     LTLTVLGGLIARSYTQNTPLEQWVARTRFGVNRAAWAGNYVSEMTELYKVVFPITLEL
                     ERYPELNPRTSDHIQVTWLILRLPAQTRLEDWMIHFTGAEVWDNHGWLGLRDSTRLVE
                     WTGEDFDADIGSRRPQELGVARYRRVYHEDKLLGQLKKFRGKLVYTPLEGVHLPPLVL
                     E"
     gene            664..1653
                     /locus_tag="VLF16_10740"
     CDS             664..1653
                     /locus_tag="VLF16_10740"
                     /inference="COORDINATES: protein motif:HMM:NF042867.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6708 domain-containing protein"
                     /protein_id="HSX71398.1"
                     /translation="MLNKLRTMLAERFGSQYPTVVLSAHQATGQQPMQLNEVDEHTKY
                     YLSLKHFEDVAKGMWTGALVQVGSLIGLLVAGMAFIDGEFAWGIKGLAIAALFFLIPF
                     TWEVLHPLPLPTLLNRRTRELYFELNGTLYHTPWDQVEAVTYEYQMVHQNTGAMRHAP
                     LEVLMHCYGKPDQTILVNLVIPVGRSIEINLHFWEYLRAYMNNGPWFDPDGHHSESNE
                     FVKSKLADQLQPSGYLAHSIQTIAEQKKAAGGRNYLTGIDTAILVGEMFFYPMHRTQQ
                     FTYAMAKRRSRNQWPAEVAERLRPDGPSTRLIDLEIDRGLITPAVSAEPTRSL"
     gene            1935..2993
                     /locus_tag="VLF16_10745"
     CDS             1935..2993
                     /locus_tag="VLF16_10745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010222864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71399.1"
                     /translation="MPENPYERLPQAGDFERETGTEVFYLAPRPVPTGMPAFSGQNLH
                     QEANDVFLDVAAGQASVEFDARAYIGSVMTLVILHSFTAGLAAWLRRDKEPFWPSSLH
                     YELNPFMWGFIACIAALAGYNMFRIIRNLGSRSPLRFNRQRREVALVFRGEASVYVPW
                     EEVIACVSASQIVTQYAVMPSFALMLGLRDASSGDVHWVTIPGGNLGLVVSEWEAIRV
                     YMEEGPAALPTPVLSDEEFQEGTVAYLHMCRGVYRKEHWWPRYAFGFLVIQFCSGWTL
                     PCHIAQWVNRRPKAVFPQEVLDWSQPLPDEQQSKPSEALLKESAEIRKAFAKGQNLLD
                     YYQIKFAEPATESPATAG"
     gene            3550..4173
                     /locus_tag="VLF16_10750"
     CDS             3550..4173
                     /locus_tag="VLF16_10750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71400.1"
                     /translation="MQQKRIRLFANNAHFTDNEFDRFKPLVRQPNTHRGKVFSACALI
                     PFGLFLLGLVTEQGWLACIMLIATPILPFAVFWWLERGIPPDRVEAYAEQDGLLLEFE
                     CGHFPELSTAIRIPFAEIESITLESKTVHEGRHGTHRWRQYRIKTSRSGKFPHLLINT
                     FRPLHLVMSDLQRLSPLMPHRIDIHLVGPQSEIAACNAQWKGEYSTE"
     gene            complement(4181..>4843)
                     /locus_tag="VLF16_10755"
     CDS             complement(4181..>4843)
                     /locus_tag="VLF16_10755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017676170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSX71401.1"
                     /translation="PEKRLLPQHIEQSEPAGPGLLWRHYKGLLAQPGMLAWLAVVLTF
                     KLGDALGSPMIKPMLVDQGWTTTELGQLTLISSLAGIGGALLGGLLYARIGALRSLLA
                     FGALQALGIAGMALLVGRGGDAGLVYAVSLFEQAADGMSTVALFAVMMRMCRPEHEGA
                     DFTLQASAQVLLAGVVGACSGVLAKVVGYQGLFLGAALLGLAMLVWVVRYFRGQGQPK
                     AA"
BASE COUNT         1014 a         1525 c         1368 g          936 t
ORIGIN      
        1 cagcttgccc tgacgatcaa gctctatcgg gcctaccggg ccggccgcct ggcggtaatg
       61 atgggccaac tggccgccct tcgcgcgggt acggcactcg cgggcggctg ggtcggcgct
      121 gtcaccttgg ggctgaccct aaccgtgctc ggtggactga ttgcccgctc ctatacacaa
      181 aacacaccgt tagaacagtg ggttgcgcga acacgtttcg gcgtcaaccg ggctgcctgg
      241 gccggtaact atgtttcgga gatgacagag ctttataagg tggtattccc catcaccctg
      301 gagctggaac gctatcccga actgaaccca cgcaccagcg atcacattca agtgacctgg
      361 ctcattttgc gcctaccggc gcagactcgc ctggaggact ggatgatcca tttcacgggt
      421 gcggaggtct gggataatca cggctggctc ggcctgcgcg atagcacccg tctggtggaa
      481 tggaccggcg aggacttcga tgccgacatc ggcagccgcc gcccccaaga gctgggcgta
      541 gctcgctacc gccgcgtata ccacgaggac aaacttctgg gccaactgaa gaaattcagg
      601 ggcaaactcg tctacacgcc actggaaggc gtacatctgc cgccactggt gctggaataa
      661 agaatgctaa acaagctccg caccatgctg gccgaacgat tcggtagtca gtaccccacc
      721 gtcgtcctgt cggcgcacca agccacgggg caacagccca tgcagctgaa cgaagtggac
      781 gaacatacaa agtactacct gtcccttaag cacttcgagg atgttgccaa agggatgtgg
      841 acaggcgcgc tggtgcaagt tggaagtctt attgggttgc ttgtggccgg catggccttc
      901 attgatgggg agttcgcatg gggcatcaaa gggctggcaa tagcagccct tttcttcctc
      961 attcctttta cttgggaagt gcttcatcca ctgcccctgc ccaccttact caaccgccgc
     1021 actcgcgaac tttacttcga gcttaatggc acgctctacc acaccccctg ggaccaggtc
     1081 gaagctgtca cctacgaata ccagatggtg catcagaata ccggcgcaat gcgccacgcc
     1141 cctctggagg tgctgatgca ctgctacggc aaaccagatc agaccattct ggttaatctg
     1201 gtgatccccg ttgggcgaag catcgagatc aacctgcact tctgggaata cctacgcgcc
     1261 tatatgaaca acgggccatg gttcgatccg gatggtcacc acagcgagtc aaatgagttc
     1321 gtcaaaagta aacttgcaga tcaattgcaa ccctcgggtt acttggccca ctcaatccag
     1381 accattgccg aacagaagaa agctgccggc ggcaggaact acctgacggg tatcgacacc
     1441 gcaattctgg tgggcgagat gttcttctac cccatgcacc gcactcagca gttcacctac
     1501 gccatggcca agcgccgctc gcgcaaccaa tggccagcgg aggtagccga gcgcctgcgc
     1561 cccgacggcc ccagcacccg cctgatcgac ctggaaatcg accgcggctt gatcactcca
     1621 gcagtgagcg ctgagcccac caggtcgctt tgaagagtct ggctttcggc tctggcatgt
     1681 ggccgccccg aggaccagtg gatgaccagc agcgctggat gcgggttgct gctggggcct
     1741 ggccgaggcc agcatgcgcc cactggtcac cgttcaaggc ctggtccagc gttcctagga
     1801 tggcgaagac tcgcgccgcc tgctgctgag cctggccagc ctgcgccagc atccgctacg
     1861 cctcacagcg gaatgggaat atccgctcgg ctggcccgca aaggacatca gcgaaatctc
     1921 cccggagcac ctgcatgcct gaaaacccat atgaacgcct gcctcaagcc ggtgacttcg
     1981 agcgcgaaac cggcaccgag gtgttctacc tggcccccag accggtgccc accggcatgc
     2041 cggccttcag cgggcagaac ttgcatcagg aggccaatga cgtctttctg gatgtggccg
     2101 ccggccaggc cagcgtcgag ttcgacgcta gggcctatat cggctcagtc atgacgctgg
     2161 tgatattgca ctcctttacg gcgggtttgg ctgcctggct gcgacgggat aaagagccat
     2221 tctggcccag ttcgctgcat tacgaactta acccgtttat gtggggtttt attgcctgca
     2281 ttgccgcttt ggccggctac aacatgtttc gcattatccg caatcttggt tctcgctcgc
     2341 ccttgcgttt taaccgccag cgccgcgagg tagccctggt ttttcgcggc gaagcctctg
     2401 tctatgtgcc ctgggaagag gtgatcgcct gcgtttcggc cagccagatc gtcacccagt
     2461 acgctgtcat gcccagcttt gccctaatgc tcggcctgcg cgacgccagt agcggcgatg
     2521 tccattgggt caccatcccc ggcggcaacc tgggcctggt ggtcagcgag tgggaagcca
     2581 ttcgggtgta tatggaagaa ggccctgcgg ccctgccgac gccggtactg tccgatgaag
     2641 agttccagga aggtaccgtg gcctacctcc atatgtgccg gggcgtgtac cgcaaggaac
     2701 actggtggcc acgttatgcc ttcggttttc tggtcatcca gttctgcagc ggctggacct
     2761 taccctgcca cattgcccaa tgggtcaacc gccgtcccaa ggccgtcttt ccacaggagg
     2821 tgctggactg gtcgcagccc ttgcccgacg agcagcagtc caagccgagc gaagccctgc
     2881 tcaaggaaag cgccgagatc cgcaaggcct tcgccaaggg ccaaaacctg ctggactact
     2941 accagatcaa attcgcagag ccagccaccg aatcacctgc cacagcaggt taaagcacga
     3001 cctccgaggg cctcacccgt atcgccccgc agtgtatcgg ctggctttta tcccttggga
     3061 agatctaatg gcctgcgtct cggtggagca gaccatcacc caatatgcgc tcaacaccca
     3121 tttcgcctta cggctaggat ttcacgacac ccaagaaggg cagatgtact ggcttagcgc
     3181 gccagctccc agtctggtgt tcgtcattag cgagtgggag gcactgcggg ttatatggaa
     3241 caaggccccg acgccctgcc tccaccaccg ccagccgagt atgaggaagg cagccaggct
     3301 attttccggg cgacctgcga tatctaccgc gaagaactcc gctttatccg ctatcgctgg
     3361 accatacctt gcaaggttgc cgagtggttc ggtcgcctgc ccaaggccgg tttcccaaag
     3421 ccgcgagggc cgaacgggta gctcgccact aggcgtttaa gacaaacatg agggttaacc
     3481 actactccaa cacgatctat accagcagca tcagggcgga gcggtggatc aaatttcaca
     3541 ggaatggcca tgcagcagaa acggattcga cttttcgcca acaacgctca cttcactgac
     3601 aacgaatttg atcgtttcaa gccactggtg cgccagccaa acacccaccg agggaaagtc
     3661 ttcagcgcat gtgccctgat tccattcggg ctattcctgt tgggcctggt gacagagcag
     3721 ggctggttag cgtgcatcat gctcatagcg acgccgatcc tcccttttgc agttttctgg
     3781 tggcttgagc gtggcatacc gccggacagg gtcgaggcat atgcggaaca ggatggcctt
     3841 ctactagagt tcgagtgtgg tcactttcca gagctcagta ccgctatccg gattccgttt
     3901 gccgaaatcg agtcgattac tctggaatca aagacagtgc atgaagggcg gcacggaaca
     3961 catcgctgga gacaataccg tatcaagacc tctcgctcag gtaagtttcc acacttgctg
     4021 atcaatacct tccgcccatt gcacttggtg atgagcgatt tacagcgact gtccccattg
     4081 atgccccaca ggatagacat tcatcttgtg ggtccacaga gcgaaatagc cgcttgcaac
     4141 gctcagtgga aaggcgaata ttcaacggag tagcgataac ctaggcagcc ttgggctgcc
     4201 cttgacctcg aaaatagcga accacccaca caagcatggc taaccccaac aacgccgccc
     4261 caaggaacag cccctgatat cccaccacct tggccaacac cccgctgcac gcccccacca
     4321 cacctgccag cagcacctga gcactggcct gcagggtgaa gtccgcccct tcgtgctcgg
     4381 ggcggcacat gcgcatcatc acggcgaaca gggcgacggt ggacatccca tcggcagcct
     4441 gctcgaacag cgagaccgcg tagaccaggc ctgcatcgcc gcctcgcccc accagcagcg
     4501 ccatgccggc aatacccagg gcctgcagcg cgccaaaggc caataaagac cgaagggcgc
     4561 cgatgcgcgc gtagagcagg ccaccgagca gggcgccgcc gatgccggcc aggctgctga
     4621 tcagggtcag ctggccgagt tcggtggtgg tccagccctg gtccaccagc atcggcttga
     4681 tcatcggtga gccgagggcg tcgccgagct tgaacgtcag caccaccgcc agccaggcca
     4741 gcatgcccgg ctgtgccagc agccccttgt agtggcgcca aagcaaaccg gggccggcgg
     4801 gttcggactg ctcgatgtgc tgtggcagca ggcgcttctc ggg
//
LOCUS       DATIHC010000648         2915 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_20448, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000648 DATIHC010000000
VERSION     DATIHC010000648.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2915)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2915)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2915
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20448"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(362..1240)
                     /locus_tag="VLF16_10760"
     CDS             complement(362..1240)
                     /locus_tag="VLF16_10760"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HSX71402.1"
                     /translation="MRAAELIDLLRQYDPDTDIPVAYTDTEFGAEPQLRVASCYSSGD
                     TRCYQNLVEQAQEGLVVLDPFGRVTYMNPFMQQFLGYSPAEALGRPLAQVISADLVEV
                     VLMQRRQGPSAERYPMRIEARDGRVRWVQMSATPIPSADGSDRGSLLTITDISHRESH
                     ADKLGDQENLGQKVWRISEQLDSLKSLRLNLLAELEALQDSPRIAATPYWHQQRYLYL
                     VRPQKDGKRVREYVGAQPERISEALAAVRREQRYQDVCRELQEMEEKIRTSTFKLDSF
                     LWELARVPQNLHKLVS"
     gene            1466..2065
                     /locus_tag="VLF16_10765"
     CDS             1466..2065
                     /locus_tag="VLF16_10765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003459150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HSX71403.1"
                     /translation="MSHADVEVLQRETCFKGFYRLDRLHLRHRQFAGGMGPQLSRELF
                     VRHDAVCVLPYDPQRDTVVLIEQFRVGALEKSANPWLLELVAGLIDKDEQPEEVAHRE
                     AEEEADLTLAALWPITQYYPSPGGSDERVHLYLGRCDSEGVGGVHGLAEEGEDIRVHV
                     WPLEDALQAIKDGRIDNAASIIALQWLALNRAEVRGLWA"
     gene            2056..2508
                     /locus_tag="VLF16_10770"
     CDS             2056..2508
                     /locus_tag="VLF16_10770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1249 domain-containing protein"
                     /protein_id="HSX71404.1"
                     /translation="MGVNLLRERYRVDLVELQAACEANYARLLRLLPDMREAEGERRV
                     AVSQGDLLLGVLVVRVLENCPYTTTLEVRQEHSLPWLPVPRLEVRAYHDARMAEVIGA
                     ENARRFRSIYPYPNAAMHQPDEKTQLNLFLGEWLSHCIACGHELVPVL"
     gene            2672..>2915
                     /locus_tag="VLF16_10775"
     CDS             2672..>2915
                     /locus_tag="VLF16_10775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003171324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HSX71405.1"
                     /translation="MSRPSSLVPDRPVLLVQLSDSHLFAEPDGKLLGMNTHDSLEKVV
                     EQVRAEQQDIDLILATGDLSQDGSVASYRHFHELTSG"
BASE COUNT          511 a          958 c          946 g          500 t
ORIGIN      
        1 ggagccgcaa ccggcgatga ggatcaccgc ctcgcgcagg ccgcactggt cgtcggcgct
       61 gatgaagccg gcgttgcgca gggtgagttc gcggtagaac tgatcgtgat ccaggggagg
      121 cgatgggaga gtcatggttg cgtcctgcat gggtagggag gcgggcatcc tatgcagcgc
      181 tttaatggca caacaagaac caatcacccc ccgctgacat taatccatga gcaatctatc
      241 tcattgtttt ataaggatat tttatctgtg atcacagata ttcagagcgc agaaacgaca
      301 accgccccgg aatggggcgg tcgttgatgg aaccgtggtc gaaaaagccg gtcgcgaggc
      361 tctagctcac cagcttgtgc aggttctgcg gcaccctggc cagctcccag aggaagctgt
      421 ccagcttgaa ggtggaagtg cggatcttct cctccatctc ctgcagctcg cggcacacgt
      481 cctggtagcg ctgctcgcgg cgcacggcgg ccagggcttc gctgatccgc tccggctgcg
      541 cgccgacgta ctcgcgcacg cgcttgccgt ccttctgcgg gcgcaccaga tagaggtagc
      601 gctgctggtg ccagtacggc gtggcggcga tgcgcggcga atcctgcagc gcctcgagtt
      661 cggccagcag gttcaggcgc agcgacttga ggctgtccag ctgctcggag atgcgccaga
      721 ccttctgccc gaggttttcc tgatcgccga gtttgtcggc atggctctcg cggtgggaga
      781 tgtcggtgat ggtcagcagg ctgccacggt cgctgccgtc ggcactggga atcggtgtgg
      841 cactcatctg cacccagcgc acccgtccgt cgcgagcctc gatgcgcatc gggtagcgct
      901 cggccgatgg cccctggcga cgttgcatca gcaccacctc gaccaggtcg gcggaaatca
      961 cctgggccag cgggcggccc aacgcctcgg ccggggaata gccgagaaac tgctgcatga
     1021 aggggttcat gtaggtgacg cgcccgaagg ggtcgagcac caccaggcct tcctgggcct
     1081 gctccaccag gttctggtag cagcgcgtgt cgccgctgct gtagcagctg gccacgcgta
     1141 actgcggctc cgcaccgaac tcggtgtcgg tataggccac cgggatatcc gtgtccggat
     1201 cgtactgacg gagcagatcg atcagctctg cggcgcgcat acccacctcc ctgttgagtc
     1261 ggtacagaca tcgccgagta tactcgccgg tagccaatgc aaaagactgc catttgcagg
     1321 aaatgccgag cggttcttca tttagcgccg ggcgcacggc ccgggaacgt tcggagagcg
     1381 gccttgccaa agcatgtccg cggcgcgcac attcagcgct gatgcgatag gaacgcgggg
     1441 gcgaccccgc acaaggggga gttgcatgtc acatgccgat gtcgaggtgc tccagcgcga
     1501 gacctgtttc aagggcttct accgcctgga ccgcctgcat ctgcgccatc gccagttcgc
     1561 cggtggcatg ggcccgcagc tcagccgcga gctgttcgtg cgtcacgacg ccgtctgcgt
     1621 gctgccctac gacccgcaac gcgacaccgt ggtgctgatc gagcagttcc gcgtcggcgc
     1681 cctggaaaag agcgccaacc cctggttgct ggaactggtg gcggggctga tcgacaagga
     1741 cgagcagccc gaggaagtcg cccatcgcga ggccgaggaa gaggccgacc tgaccctcgc
     1801 cgcgctctgg cccatcaccc agtactaccc ctcccccggc ggctccgacg agcgcgtcca
     1861 cctctatctc ggccgttgcg acagcgaagg cgtcggcggc gtgcacggtc tggccgagga
     1921 aggcgaggac atccgcgtgc atgtctggcc cctggaagac gccctgcagg ccatcaagga
     1981 tggccgcatc gacaacgccg ccagcatcat cgccctgcaa tggctggcgc tgaaccgcgc
     2041 cgaagtgcga gggctgtggg cgtgaacctg ctgcgcgagc gctaccgcgt cgacctggtc
     2101 gagctgcagg ccgcctgcga ggccaactat gcgcgcctgc tgcgcctgct gccggacatg
     2161 cgcgaggccg aaggcgagcg ccgcgtggcg gtcagccagg gcgatctgct gctcggcgtg
     2221 ctggtggtcc gcgtcctcga gaactgcccc tacaccacga ccctggaggt gcgccaggag
     2281 cacagcctgc cctggctgcc ggtgccgcgc ctggaggtgc gggcctacca cgacgcacgc
     2341 atggccgagg tgatcggcgc ggaaaacgcc cggcgcttcc gcagcatcta cccctatccc
     2401 aacgccgcca tgcaccagcc ggacgagaag acccagctca acctgttcct cggcgaatgg
     2461 ctgagccact gcatcgcctg cggccacgag ctcgtcccgg tgctctgacc gttgcctcgg
     2521 cgacctcgcg agccgcatgg ccacgggagt cgcacagttc gacgaaacgg ccaggttgca
     2581 accgcgcaaa tgtgacaggt tcacgtttgt cgggtttacc gaatcgccgt tcacccacca
     2641 taatcctggg aacccgctca ggagttggcc cttgtcgcgc ccgtcgtctc ttgtccccga
     2701 tcgtccggta ctgctggtgc agttgtcgga cagccacctt tttgccgagc cggacggcaa
     2761 gctgctgggc atgaacaccc acgacagcct ggaaaaggta gtcgagcagg tacgggcgga
     2821 acagcaggac atcgacctga tcctggccac cggcgacctg tcacaggacg gcagcgtggc
     2881 ctcctaccgg catttccacg aactcacttc gggcc
//
LOCUS       DATIHC010000649         2737 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34456, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000649 DATIHC010000000
VERSION     DATIHC010000649.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2737
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34456"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..109
                     /locus_tag="VLF16_10780"
     CDS             <1..109
                     /locus_tag="VLF16_10780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017149198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX71406.1"
                     /translation="FQAMKVKAFLDFLMASLPQASLLEPVAAGLLTSRP"
     gene            136..1620
                     /gene="gltX"
                     /locus_tag="VLF16_10785"
     CDS             136..1620
                     /gene="gltX"
                     /locus_tag="VLF16_10785"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009332 - glutamate-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HSX71407.1"
                     /translation="MTKVRTRIAPSPTGDPHVGTAYIALFNLCFARQHGGEFILRIED
                     TDQLRSTRESEQQIFDALRWLGIEWNEGPDVGGPHGPYRQSERGAIYKKYSDELVAKG
                     HAFPCFCSAERLDQVRAEQMAKKETPRYDGHCIHIAPEEAQKRIDAGESHVVRMKVPS
                     EGVCVVPDMLRGDVEIPWDRMDMQVLMKADGLPTYFLANVVDDHLMEITHVLRGEEWL
                     PSAPKLIKLYEYFGWEQPKLCYMPLLRNPDKSKLSKRKNPTCITFYERMGFMPEALLN
                     YLGRMGWSMPDEREKFSLDEMIEHFDLSRVSLGGPIFDIEKLSWLNGQWLRELPVEQF
                     ARRVQDWAFNSRYMMQIAPHVQQRVETFSDIAPLGSFFFSGGVQLDPALLAHKKLTPD
                     QVRQALQLLLWELEALRQWDKEKITGCIQFVCEGLGLKLRDLMPLIFPAITGKASSVS
                     VLDAMEILGADLSRFRLRQAVELLGGVTNGETKEWKKLLESFRG"
     gene            1772..1847
                     /locus_tag="VLF16_10790"
     tRNA            1772..1847
                     /locus_tag="VLF16_10790"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1805..1807,aa:Ala,seq:ggc)
     gene            1897..1972
                     /locus_tag="VLF16_10795"
     tRNA            1897..1972
                     /locus_tag="VLF16_10795"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1931..1933,aa:Glu,seq:ttc)
     gene            2441..>2737
                     /locus_tag="VLF16_10800"
     CDS             2441..>2737
                     /locus_tag="VLF16_10800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003091412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="keto-hydroxyglutarate-aldolase/keto-deoxy-
                     phosphogluconate aldolase"
                     /protein_id="HSX71408.1"
                     /translation="MSLTMEAVLQRARPVLPVLVIEDSELAVDMARALHAGGINVLEV
                     TLRTPRALDALAAIRKALPELLVGAGTVIHAEQFQEARDAGAQFAVSPGCTERLA"
BASE COUNT          480 a          875 c          883 g          499 t
ORIGIN      
        1 cttccaggcc atgaaggtca aggcgttcct cgatttcctc atggccagtc tgccgcaggc
       61 cagcctgctg gagccggtgg cggccggcct gctaacatcg cgcccctgaa tcactccccg
      121 tttccgagac ttgtcatgac caaagtccgc acccgtattg cgccgtcgcc caccggcgat
      181 ccgcacgtcg gcactgccta cattgccctg ttcaacctgt gcttcgcccg ccagcatggc
      241 ggcgagttca tcctgcgcat cgaggacacc gaccagctgc gctcgactcg cgagtccgag
      301 cagcagatct tcgacgccct gcgctggctg ggcatcgagt ggaacgaggg gccggacgtc
      361 ggcggtccgc acggcccgta tcggcagagc gagcgcggcg cgatctacaa gaagtactcg
      421 gacgagctgg tcgccaaggg ccacgccttt ccctgcttct gctccgccga acgcctggac
      481 caggtgcgcg ccgagcagat ggcgaagaag gaaactccgc gctacgacgg ccactgcatc
      541 catatcgccc cggaagaggc gcaaaagcgc atcgacgccg gcgaatccca cgtggtgcgc
      601 atgaaggtgc cgagcgaggg cgtctgcgtg gttccggaca tgctgcgtgg cgacgtggag
      661 atcccatggg atcgcatgga catgcaggtg ctgatgaagg ccgacggcct gcccacctat
      721 ttcctggcca acgtggtcga cgatcacctg atggagatca cccacgtcct gcgcggcgag
      781 gagtggctgc cgtcggcgcc gaagctgatc aagctgtacg agtacttcgg ctgggaacag
      841 cccaagctct gctacatgcc gctgctgcgc aatccggaca agtccaagct gtccaagcgc
      901 aaaaacccga cctgcatcac cttctacgag cgcatgggtt tcatgcccga ggcgctgctc
      961 aactacctgg gccgcatggg ctggtcgatg ccggacgagc gcgagaagtt ctccctggac
     1021 gagatgatcg agcacttcga cctgtcgcgc gtctcgctcg gcgggccgat cttcgacatc
     1081 gagaagctct cctggctcaa cggccagtgg ctgcgcgagc tgccggtgga gcagttcgcc
     1141 aggcgcgtgc aggactgggc cttcaactcc cggtacatga tgcagatcgc cccgcacgtg
     1201 cagcagcgcg tcgagacctt cagtgacatc gcgccgctgg gcagtttctt cttcagcggc
     1261 ggcgtgcaac tcgatcccgc gctgctggcg cacaagaagc tgaccccgga ccaggtgcgc
     1321 caggcgctgc agctgctgct gtgggagctg gaggcgctgc gccagtggga caaggagaag
     1381 atcaccggct gcatccagtt cgtctgcgag ggccttggcc tcaagctgcg cgacctgatg
     1441 cctctgattt tcccggccat caccggcaag gccagctcgg tctcggtgct cgatgccatg
     1501 gaaattctcg gcgccgatct atcgcgcttc cgcctgcgtc aggccgtcga actgctcggt
     1561 ggcgtgacca acggcgaaac caaggaatgg aagaagctgc tggagagttt ccgcggctga
     1621 ggaggggagt cgccggtcat cgccctgtgc gagagagatg gccggcgctc gggtaagtgg
     1681 ttgttctgcc tccagaattt tttcggctcc ggcgaaaaat tgtgttgaca ggcaaatacc
     1741 ccgcccctaa tatgcgcccc gtccaagcga cggggctata gctcagctgg gagagcgctt
     1801 gcatggcatg caagaggtcg acggttcgat cccgtctagc tccaccaaat cactgacagg
     1861 gccagcctag tgctggcctt gttcttcgaa ggttctgtcc ccttcgtcta gtggcctagg
     1921 acaccgccct ttcacggcgg taacaggggt tcgagtcccc taggggacgc cactttcttt
     1981 ccgcgttttg cggacttcaa gggtcattct tcggaatggc ccttttgttt ttccggcatt
     2041 tgatttcccg cgatatgtgg tcgcgcgctt cgcctgatgg ggcgtcatga gcgcgaagac
     2101 ggccgcaatc cgccggcgcc cagcaccgga cgaggcaatg ggtgccgccg gcaataccgt
     2161 ccgcggcctc cacgcaactt cgagaaggtt gatgctggaa gcgttccgag aattgctcgg
     2221 tctgttcggc agcctcgatt cgaacgccga gagcgcatcg agaggtcagc gaaacggctc
     2281 tggcgtcctg attacgcccg gaacgcaaac cgctgcgggc cgctctaagg cgttacactc
     2341 cctccccatg ttcctgggcc ggagttgtgc ttcggtccga gccggcgccg tcacagcagg
     2401 cgatgccgtt cggccagaaa ctcgatgagg ggagaatgac atgagcctga cgatggaagc
     2461 ggtgctgcaa cgggcacgtc cggtgctgcc ggtactggtg atcgaggaca gcgaactggc
     2521 ggtggacatg gcgcgggcac tgcacgccgg cggcatcaac gtgctcgagg tgacgctgcg
     2581 cacgccgcgc gcgctcgacg ccctggcggc gatccgcaag gctctaccgg agctgctggt
     2641 gggggcgggc acggtgatcc atgccgagca gttccaggag gcccgcgatg ccggcgccca
     2701 gttcgccgtg agccccggtt gcaccgagcg cctggcg
//
LOCUS       DATIHC010000650         1909 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_32293, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000650 DATIHC010000000
VERSION     DATIHC010000650.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1909
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32293"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..842)
                     /locus_tag="VLF16_10805"
     CDS             complement(<1..842)
                     /locus_tag="VLF16_10805"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003251241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HSX71409.1"
                     /translation="MFKQSAQHVGTYYAATYGPVPLRPRLQETLDCDVVIVGAGFSGL
                     HTGLRLALAGKKVVLLEASRLAWAASGRNGGQALPGWSCDMPPLEKALGTERARRLWD
                     SMVWAAEEMRELPERHGFDIDYRTGALYTAVLPRRVRQLQENLEEAEHTYGYRQLSFI
                     AQQDLPEWIASPRYLAALHDTGAAHLNPLKLAQGLAGAIEAAGGRIFEQSRALDWQET
                     PAGYRVRTEHGEVRGDVLVLACNAYVDGLDRELSKRLLPVGSYQVATAPLDPELARSL
                     LPRGT"
     gene            complement(920..1825)
                     /locus_tag="VLF16_10810"
     CDS             complement(920..1825)
                     /locus_tag="VLF16_10810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX71410.1"
                     /translation="MKTSLDELQAFTQVVDGGSISAAAEQLGQTASGISRALGRLEDK
                     LGVTLLRRTTRRLELTEEGAAFLAQARRILAAVEEAEEQMALRRQVPAGRLRVNAASP
                     FMLHVLVPLVAGFRERYPQIELELNSNDLIIDLLEQRTDLAIRIGALRDSSLHARPLG
                     RSRIRVLASPAYLAARGTPQSPAELRDHGLLGFTQPDSLNLWPLRHDRGDQLQIAPTL
                     KASSGETLRQLALAGAGLVCLSDFMTAEDRRSGALVEVLAAHNVDTRQPINAVYYRNT
                     ALAARITCFLDYLSECLAGQAWSQN"
BASE COUNT          282 a          624 c          695 g          308 t
ORIGIN      
        1 gtgccgcgcg gcagcagcga gcgggccagc tcggggtcga gcggggcggt ggccacctga
       61 tacgagccga ccggcagcag gcgtttcgac agctcacggt cgagcccgtc gacataggcg
      121 ttgcaggcca gcaccagcac atcgccgcgg acttcgccgt gctccgtgcg cacgcggtag
      181 cccgccggtg tctcctgcca gtccagagcc cggctctgct cgaagatgcg cccgccggcc
      241 gcctcgatgg caccagccag gccctgggcc agcttcagcg ggttgaggtg ggcggcgccg
      301 gtgtcgtgca gggcggccag gtagcgtggg ctggcgatcc actcgggcag atcctgctgg
      361 gcgatgaagc tgagctggcg gtagccgtat gtgtgctcgg cctcttccag gttctcctgc
      421 agctggcgca cccggcgcgg cagcacggcg gtgtagagcg cgccggtgcg gtagtcgatg
      481 tcgaagccgt ggcgctcggg cagctcgcgc atctcctcgg cggcccagac catgctgtcc
      541 cacaggcgcc gcgcgcgttc ggtgcccagg gccttttcca ggggcggcat gtcgcaggac
      601 caaccgggca gggcctgtcc gccgttgcgg ccggaggcgg cccaggccag acggctggcc
      661 tccagcaaca ccaccttctt gccggccagg gccaggcgca ggccggtgtg caagccgctg
      721 aagcctgcgc cgacgatcac cacgtcgcag tcgagggttt cctgaaggcg cgggcgcagc
      781 ggaaccgggc cgtaggtggc ggcgtaatag gtgccgacgt gctgggcgga ttgcttgaac
      841 atgcgggcct catgaaattt cttgttttct atttcatgaa aaaatacaca agaaaattca
      901 caaggccaag gccggtcggt cagttttgcg accaggcctg ccccgccagg cactcgctca
      961 ggtagtcgag gaagcaagtg atacgcgccg ccagcgcggt gttgcggtag tacacggcgt
     1021 tgatcggctg gcgggtatcg acgttgtgcg cggccagcac ttccaccagc gcgccggacc
     1081 gccgatcttc cgcggtcatg aagtccgaca ggcagaccag cccggcgccg gccagggcca
     1141 gctggcgcag ggtctcgccg ctggaggcct tgagcgtcgg ggcgatctgc agctggtcac
     1201 cccgatcgtg gcgcaggggc cagaggttga ggctgtccgg ctgggtgaag ccgagcaggc
     1261 catggtcccg cagctccgcg ggcgattgcg gcgtgccacg cgccgccagg taggccgggc
     1321 tggccagcac gcggatgcgg ctgcgcccca gcggtcgggc gtgcaggctg gagtcgcgca
     1381 gggcgccgat gcggatggcc aggtcggtgc gctgttccag caggtcgatg atcaggtcgt
     1441 tgctgttcag ctccagctcg atctgcggat agcgctcgcg gaagccggcc accagcggca
     1501 ccagcacgtg cagcatgaag ggcgaggcgg cgttgacccg caaacgcccg gccggcactt
     1561 ggcggcgcag ggccatctgc tcctcggcct cttcgacggc ggcgagaatg cgccgggcct
     1621 gggcgaggaa cgccgcgccc tcctcggtca gctccaggcg ccgcgtggtt cggcgcagca
     1681 aggtgacacc gagcttgtcc tcgaggcggc ctagggcgcg gctgatgccc gaggcagtct
     1741 gccccagctg ctcggcagcg gcgctgatgg agccgccgtc caccacctgg gtgaaggcct
     1801 gcagttcgtc caggctggtc ttcattcgtg attccttggc aaatatcttt ggcgtactac
     1861 cgggtttttc cgcatgagtc tggcgtggag actgcgcgtc atccagtcc
//
LOCUS       DATIHC010000651         1748 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34466, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000651 DATIHC010000000
VERSION     DATIHC010000651.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34466"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..283
                     /locus_tag="VLF16_10815"
     CDS             <1..283
                     /locus_tag="VLF16_10815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003155552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TrmH family RNA methyltransferase"
                     /protein_id="HSX71411.1"
                     /translation="YSLQDCITAIRPDRILAFTTKASHSYAQMKYQAGDMLLFGPESR
                     GLPAEILAQYPDEQRLRMPMRPQCRSLNLSNAVAVVVYEAWRQLDFAGS"
     gene            complement(329..805)
                     /gene="secB"
                     /locus_tag="VLF16_10820"
     CDS             complement(329..805)
                     /gene="secB"
                     /locus_tag="VLF16_10820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003453349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0051262 - protein tetramerization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HSX71412.1"
                     /translation="MTEQANNGAAQSNEGPQFSLQRIYVKDLSFEAPKSPEIFRLEWA
                     PSVALDLNTKQKQLEGDFHEVVLTLSVTVKTGEEIAFIAEVQQAGIFLIKGLDAASMS
                     HTLGAFCPNILFPYAREALDSLVIRGSFPALMLSPVNFDALYAQELQRQQQGTAQA"
     gene            complement(840..1094)
                     /gene="grxC"
                     /locus_tag="VLF16_10825"
     CDS             complement(840..1094)
                     /gene="grxC"
                     /locus_tag="VLF16_10825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 3"
                     /protein_id="HSX71413.1"
                     /translation="MSEVVVYSSAWCPYCIRAKQLLTAKGVAFREISVDGKPDVRAEM
                     TRKAGRTSVPQIWIGATHVGGCDDLFALERAGRLDALLNA"
     gene            complement(1096..1509)
                     /locus_tag="VLF16_10830"
     CDS             complement(1096..1509)
                     /locus_tag="VLF16_10830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002551466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HSX71414.1"
                     /translation="MLAQLIEFATNHYALAGCFAVLLVLLIVTELRKGGQSLSSRELT
                     ALVNSDQGVVLDVRNQKDFSAGHIVDAVNIPFDKLSSRMVELEKYKAKTIIVVDAMGQ
                     HAGAVARDLKKAGYTAAKLAGGISSWRGDNLPVVK"
     gene            1649..>1748
                     /locus_tag="VLF16_10835"
     CDS             1649..>1748
                     /locus_tag="VLF16_10835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012020033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71415.1"
                     /translation="MSATPKPLVLIILDGFGHSDSPDYNAIHAASTP"
BASE COUNT          321 a          552 c          549 g          326 t
ORIGIN      
        1 ctattctttg caggactgta tcacagccat tcgccccgac agaatcctgg cattcaccac
       61 caaggctagt cacagctacg cgcagatgaa ataccaagcg ggcgatatgt tgctattcgg
      121 acccgagagt cgcggcctgc ctgccgagat actggcccag tatcccgacg aacagcgcct
      181 gcgtatgccg atgcgcccgc aatgccgcag cctcaatttg tccaacgccg tcgccgtggt
      241 ggtctatgag gcttggcgcc agctggattt cgccggctcc tgaaacaaaa aagccgcctg
      301 atggcggctt tttcatgcag aacggcgatc aggcctgagc ggtgccttgc tgctgacgct
      361 gcagctcctg ggcgtacagg gcgtcgaagt tcaccggcga cagcatcagc gccgggaagg
      421 agccgcggat caccaggctg tccagcgcct cgcgggcgta ggggaatagg atgttcgggc
      481 agaacgcgcc gagggtgtgg ctcatggaag ccgcgtccaa ccccttgatc aggaagatac
      541 cggcctgctg cacttcggcg atgaaggcga tctcttcgcc ggtcttcacg gtcacggaga
      601 gggtcagcac cacttcgtga aagtcgcctt ccagctgctt ctgcttggta ttcaggtcca
      661 gcgccacgct cggcgcccac tccagacgga aaatctccgg gctcttcggc gcctcgaagg
      721 acaggtcctt gacgtagatg cgctgcaggg agaattgcgg cccttcgttg ctctgagcgg
      781 cgccgttgtt cgcttgttcg gtcatgagga ttcttcttgt gacgggtttc tgagagggtt
      841 caggcgttca gcagcgcgtc gagccggccg gcgcgctcca gggcgaagag gtcgtcgcag
      901 ccaccgacat gggtggcgcc gatccagatc tgcggcaccg aggtgcggcc ggccttgcgc
      961 gtcatctcgg cacgcacatc cggcttgccg tccacgctga tttcgcggaa ggccacgccc
     1021 ttggcggtga gcagctgttt ggcgcggatg cagtaggggc accaggcgct ggaatagacg
     1081 acgacttcgg acatgtcact tgaccacggg caggttgtca ccgcgccagc tggagatgcc
     1141 gccggccagc ttggcggcgg tatagccggc cttcttcagg tcgcgggcca cggcaccggc
     1201 gtgctggccc atggcatcga ccacgatgat ggtcttggcc ttgtactttt ccagttccac
     1261 catacggctg gacagcttgt cgaaggggat gttcacggcg tcgacgatgt ggccggcgga
     1321 gaagtccttc tgattgcgca cgtccagcac cacgccctgg tcgctgttga ccagcgcggt
     1381 cagttcgcgg ctggagaggc tctgcccgcc cttgcgcagc tcggtgacga tgagcagcac
     1441 caggagcacg gcgaagcagc cggccagcgc atagtggtta gtggcaaatt caatcagttg
     1501 ggccaacatc gtgaggttcc aaagccttaa aatggcggcc agtatacaca gcgcgcccat
     1561 cgggccaagc cccgcacggc ggtgacgcca gagccccacg ccggtagaat gcgcgacctt
     1621 ttttgatcac cacagagagc cagtcttcat gagcgcgacg cccaaacccc tggtcctgat
     1681 catcctcgac ggcttcggcc acagcgacag ccccgactac aacgccatcc acgcggccag
     1741 caccccgg
//
LOCUS       DATIHC010000652         1708 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29801, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000652 DATIHC010000000
VERSION     DATIHC010000652.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1708
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29801"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..556
                     /gene="rpoB"
                     /locus_tag="VLF16_10840"
     CDS             <1..556
                     /gene="rpoB"
                     /locus_tag="VLF16_10840"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011784241.1"
                     /note="DNA-dependent RNA polymerase catalyzes the
                     transcription of DNA into RNA using the four
                     ribonucleoside triphosphates as substrates; beta subunit
                     is part of the catalytic core which binds with a sigma
                     factor to produce the holoenzyme; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HSX71416.1"
                     /translation="VGPEAAWTKDVPSAAVKSAAGTPVATPVFDGAKESEIKAMLKLA
                     DLPESGQMRLTDGRTGNQFERPTTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
                     GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEAG
                     MPESFNVLIKEIRSLGIDIELETE"
     gene            613..>1708
                     /locus_tag="VLF16_10845"
     CDS             613..>1708
                     /locus_tag="VLF16_10845"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252959.1"
                     /note="DNA-dependent RNA polymerase catalyzes the
                     transcription of DNA into RNA using the four
                     ribonucleoside triphosphates as substrates. Subunit beta'
                     binds to sigma factor allowing it to bind to the -10
                     region of the promoter; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HSX71417.1"
                     /translation="MKDLLNLLKNQGQIEEFDAIRIGLASPEMIRSWSFGEVKKPETI
                     NYRTFKPERDGLFCAKIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERM
                     AHIELASPVAHIWFLKSLPSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLL
                     NDEQYFEALEEFGDDFDARMGAEAVRELLNAIDLDHEIGRLREEIPQTNSETKIKKLS
                     KRLKLMEAFKDSGNHPEWMVLTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN
                     NRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK
                     QGRFRQNLLGKRVDYSGRSVITVGPTLRLHQ"
BASE COUNT          345 a          539 c          527 g          297 t
ORIGIN      
        1 cgtcggcccc gaggcggcct ggaccaagga cgtcccgtcc gcggccgtga agagcgccgc
       61 cggcacgccc gtcgccaccc cggtgttcga cggtgccaag gaaagcgaga tcaaggccat
      121 gctgaagctg gccgatctgc cggaaagcgg ccagatgcgc ctgaccgacg gccgtaccgg
      181 caaccagttc gagcgtccga ccaccgtcgg ctacatgtac atgctcaagc tgaaccacct
      241 ggtcgacgac aagatgcacg cccgttccac cggttcctac agcctggtta cccagcagcc
      301 gctgggtggt aaggcgcagt tcggtggtca gcgtttcggt gagatggagg tctgggcgct
      361 ggaagcctac ggcgccgcct acaccctgca ggaaatgctg acggtcaagt ccgacgacgt
      421 gaacggccgg accaagatgt acaagaacat cgtggacggc gatcaccgca tggaggccgg
      481 catgccggag tccttcaacg tgttgatcaa agagatccgt tcgctcggta tcgacatcga
      541 actggaaacc gaataacacg ccttgctgcg gccgcatcgc cggccgcagc aggtccgtga
      601 ggaggaaagg ccttgaaaga cttgctgaat ctgttgaaaa accagggtca aatcgaagag
      661 ttcgatgcca ttcgtattgg tctggcctcg cccgagatga tccgttcctg gtccttcggt
      721 gaagtgaaga agccggagac catcaactac cgtaccttca agccggagcg cgatggcctg
      781 ttctgcgcca agatcttcgg cccggtgaag gattacgagt gcctgtgcgg taagtacaag
      841 cgcctcaagc accgcggcgt gatctgcgag aagtgcggcg tggaagtggc cctggccaag
      901 gtccgtcgtg agcgcatggc gcacatcgag ctggcctcgc cggtcgccca catctggttc
      961 ctgaagtccc tgccgtcccg tatcggcctg ctgctggaca tgaccctgcg tgacatcgaa
     1021 cgcgtgctct atttcgagag ctacgtggtg atcgatccgg gcatgaccac cctggagaag
     1081 ggtcagctgc tgaacgacga gcagtacttc gaagccctcg aagagttcgg tgacgacttc
     1141 gacgcgcgca tgggcgccga ggccgttcgc gagctgctca acgccatcga cctggatcac
     1201 gagatcggcc gcctgcgcga agagattccg cagaccaact ccgagaccaa gatcaagaag
     1261 ctgtccaagc gcctgaagct gatggaagcc ttcaaggact ccggcaacca cccggagtgg
     1321 atggtcctga ccgttctgcc ggtactgccg ccggacctgc gtccgctggt tccgctggat
     1381 ggcggccgct tcgcgacttc cgatctcaac gatctgtacc gtcgcgtgat caaccgtaac
     1441 aaccgtctga agcgcctgct cgacctggcc gctccggaca tcatcgtgcg caacgaaaag
     1501 cgcatgctgc aggaagcggt cgacgccctg ctggacaacg gccgtcgcgg tcgcgccatc
     1561 accggctcga acaagcgtcc gctgaagtcc ctggccgaca tgatcaaggg taagcagggt
     1621 cgcttccgcc agaacctgct cggtaagcgc gtggactact ccggtcgttc cgtgatcacc
     1681 gtgggcccga ccctgcgcct gcaccagt
//
LOCUS       DATIHC010000653         1573 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_8954, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000653 DATIHC010000000
VERSION     DATIHC010000653.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8954"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..217)
                     /locus_tag="VLF16_10850"
     CDS             complement(<1..217)
                     /locus_tag="VLF16_10850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-transfer associated ATP-grasp
                     domain-containing protein"
                     /protein_id="HSX71418.1"
                     /translation="MGLWKTWKALEAKGIMGINRRNADYVLKYNKRHLYPIVDDKIIT
                     KERALAAGIHVPELYGVISTEKEIEKFG"
     gene            complement(225..>1573)
                     /locus_tag="VLF16_10855"
     CDS             complement(225..>1573)
                     /locus_tag="VLF16_10855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="inactive transglutaminase family protein"
                     /protein_id="HSX71419.1"
                     /translation="VQMFVPPLNQDYVSLNESFISNNYGVSVNRVDGNRKLTWSARRA
                     NGNQTLYYRLVLTKRYSGEPAKAKGPIFRDSIPVEGPEKIAAEALLAPIRQHSADVQT
                     FISETIKRVNNANDDNVKLLLGGDASTANKAKVIDLLLSIAHVPMERVHTIRLIADAQ
                     QGPELWLRSFNGENWLYFNPESGEQGLPTDRVVWWTGDDPLVSIEGGKKPQVTFTLNN
                     SEMNAIRLAKLTDENTDVDFLEYSLYGLPLQTQQTYQIMIMIPIGVLVILILRNLGGL
                     QTLGTFTPVLIALAFRETQLGFGIVLFTIITALGLSLRSYLEHLKLQMLPRLSVVLTF
                     VVVLIAVISLFSHKLGLERGLSVALFPMVILTMTIERLSITWEERGGTHAFKVAVGTL
                     IAASLAHALMSIPQLTYFVFTFPAVLLVLVGFMLAMGRYRGYRLTELFRFKAFLKD"
BASE COUNT          270 a          448 c          546 g          309 t
ORIGIN      
        1 cgccgaactt ctcgatctcc ttctccgtgg agatcacgcc gtacagctcg ggcacgtgga
       61 tgccggcggc gagggcgcgc tccttggtga tgatcttgtc atcgacgatc gggtacaggt
      121 gccgcttgtt gtacttcagc acgtagtccg cgttgcggcg gttgatgccc atgatgcctt
      181 tggcttcgag ggccttccat gtcttccaca gaccgatcat gggttcaatc cttcaggaag
      241 gctttgaaac ggaacagctc ggtcaggcgg tagccgcggt agcgacccat cgccagcatg
      301 aagcccacca gtaccagcag cacggccggg aaggtgaaga cgaagtaggt cagctgcgga
      361 atgctcatca gcgcgtgggc cagggatgcg gcgatcaggg tgccgacggc gaccttgaag
      421 gcgtgggtgc cgccgcgctc ttcccaagtg atggacaggc gttcgatggt catggtcagg
      481 atcaccatgg ggaacagcgc caccgacagg ccgcgttcca ggccgagctt gtggctgaac
      541 aggctgatca cggcgatcag caccaccacg aaggtcagca ccaccgacag gcgcggcagc
      601 atctgcagct tgaggtgctc gaggtacgag cgcagcgaca ggccgagggc ggtgatgatg
      661 gtgaacagca cgatgccgaa gcccagctgg gtttcgcgga aggcgagggc gatcagtacc
      721 ggggtgaagg tgccgagagt ctgcagacca ccgaggttgc gcaggatcag gatcaccagt
      781 acgccgatcg ggatcatgat catgatctgg taggtctgct gggtctgcag cggcaggccg
      841 tacagggagt attcgaggaa gtcgacgtcg gtgttctcgt cggtcagctt ggccaggcgg
      901 atggcgttca tctcgctgtt gttcagggtg aacgtgacct gaggcttctt gccgccctcg
      961 atgctcacca gcgggtcgtc gccggtccac cacaccacgc ggtcggtcgg caggccctgt
     1021 tcgccgctct ccgggttgaa gtacagccag ttctcgccat tgaagctacg cagccacagc
     1081 tccgggccct gctgggcatc ggcgatcagg cggatggtgt gtacgcgctc catcggcacg
     1141 tgggcgatgg acagcagcag gtcgatcacc ttggccttgt tggcggtgga ggcgtcgccg
     1201 ccgagcagca gtttgacgtt gtcgtcattg gcgttgttga cgcgcttgat ggtctcgctg
     1261 atgaaggtct gcacgtcggc cgaatgctgg cggatgggcg cgagcagggc ttcggcggcg
     1321 atcttctcgg ggccttcgac cgggatgctg tcgcggaaga tcgggccctt ggccttggcc
     1381 ggctcgccgc tgtagcgctt ggtcagcacc aggcggtagt agagagtctg gttgccgttg
     1441 gcgcgacggg ccgaccaggt cagcttgcgg ttgccgtcca cgcggttgac gctcacgccg
     1501 tagttgttgg agatgaaact ctcgttgagg ctcacgtagt cctggttcag cggcggcacg
     1561 aacatctgca cct
//
LOCUS       DATIHC010000654         5123 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_6608, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000654 DATIHC010000000
VERSION     DATIHC010000654.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5123
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6608"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..226)
                     /gene="tusB"
                     /locus_tag="VLF16_10860"
     CDS             complement(<1..226)
                     /gene="tusB"
                     /locus_tag="VLF16_10860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017938285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusB"
                     /protein_id="HSX71420.1"
                     /translation="MATLHLLSHSPFSDSRLASCLRLLGPDDGVLLSGDAVYALQPGT
                     AQLQALELMPASIALYALDEDLQARALNAPA"
     gene            complement(226..585)
                     /gene="tusC"
                     /locus_tag="VLF16_10865"
     CDS             complement(226..585)
                     /gene="tusC"
                     /locus_tag="VLF16_10865"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016498867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusC"
                     /protein_id="HSX71421.1"
                     /translation="MSKSMLIISRQAPWAGPSAREALDIALAGGAFDLPLGLLFLDDG
                     VFQLVAGQQSAALQQKDLTANLQALPLFGVEELFVSSRSLAERGLSDAQLTLPAEELD
                     DRALAQLLDRFDQVVTI"
     gene            complement(585..977)
                     /gene="tusD"
                     /locus_tag="VLF16_10870"
     CDS             complement(585..977)
                     /gene="tusD"
                     /locus_tag="VLF16_10870"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008369116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusD"
                     /protein_id="HSX71422.1"
                     /translation="MKFAIALFAPSHAPSSRRALRFAQATVDGGHEIVRLFFYQDGVH
                     SASSNVVSPQDELDLAGEWRNFVQQHNLDAVVCIAAALRRGVLNAEEAQRYGRPAANL
                     DAPWELSGLGQLHEAAQMADRLVCFGGQ"
     gene            complement(1068..1736)
                     /locus_tag="VLF16_10875"
     CDS             complement(1068..1736)
                     /locus_tag="VLF16_10875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HSX71423.1"
                     /translation="MHEQDYALAHAHADQLETSKVLRNTYGLLAMTLVFSALCAFFSA
                     QLNLPHPGIIVTLVGFYGLFFLTAKLRNSGWGLLTTFALTGFMGYVLGPILNMYLGMA
                     NGGELIASALGMTALVFFGLSAYVLTTRKDMSFLGGFITAGFFVLLGAMIAGFFFQIS
                     GLQLAISAGFVLFSSACILFQTSAIIHGGERNYVMATISLYVSIYNLFISLLQIFGIM
                     GSDD"
     gene            1858..1945
                     /locus_tag="VLF16_10880"
     tRNA            1858..1945
                     /locus_tag="VLF16_10880"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1892..1894,aa:Ser,seq:tga)
     gene            complement(2019..2462)
                     /locus_tag="VLF16_10885"
     CDS             complement(2019..2462)
                     /locus_tag="VLF16_10885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71424.1"
                     /translation="MGFLFSKRLIFVLLATTLFCKAAQAAAEQQLKADLSWTAFTCAV
                     LARNSGDKPEYERLFALGYEAGLAFLQAVRAGTASLDGAPTGFLMVNGGPNYEFILGR
                     AYQALEEVYSVQLDQQAQRGIRREVAAGRLFEGNNCSLIGVPPGT"
     gene            complement(2509..3837)
                     /locus_tag="VLF16_10890"
     CDS             complement(2509..3837)
                     /locus_tag="VLF16_10890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71425.1"
                     /translation="MIRIAGAFGLAALLIGCSLPLRSPTSSDLAQAGRHREAAELNLN
                     DASRSERQGFKSSAASYYVMAADNFRQSALPERELAALEAGHRVALQAWQQSEGVTDR
                     RPLEGEALTAVEGRLAEYWLERDASKAARYYGAMLERRDDVRMLYAGPGLELVKAASR
                     SEALKDRRQTMRLYLFGLSGQYVESAGDLYPQLATGFARRHGFEGEARLLRQRLARVK
                     RLEADAAADLPAATVDQELSATETRRAHYASQGEHSLAAVYADQAARLERIEEKRPGV
                     MRSPQQVAQVNRGIEQLAARLAAVGTRPSAPQPSAPEVAVQSGANPVNGCIQITSSGA
                     NTITLINNCDHNVSVAWCSIPAPGALQSEKMPVAGNQICIHNGTDFPRAVLGRSGTGA
                     DIAKTYRSWELPYSQNTIYHIACDAGEKGEALPQISGFDDNLRGSCPAIN"
     gene            4254..4898
                     /gene="uvrY"
                     /locus_tag="VLF16_10895"
     CDS             4254..4898
                     /gene="uvrY"
                     /locus_tag="VLF16_10895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrY/SirA/GacA family response regulator
                     transcription factor"
                     /protein_id="HSX71426.1"
                     /translation="MIKVLVVDDHDLVRTGITRMLADIDGLQVIGQADSGEEALKKVR
                     ELRPDVVLMDVKMPGIGGLEATRKLLRSHPDLKVVAVTACEDDLFPTRLLQAGAAGYL
                     TKGAALEEMVQAIRMAFAGQRYLSPQIAQQLALKSFQPNNGGSPFDLLSEREIQIALM
                     IANCQKVQTISDKLCLSPKTVNTYRYRIYEKLSITSDVELALLAVRHGMVDAVS"
     gene            4969..>5123
                     /locus_tag="VLF16_10900"
     CDS             4969..>5123
                     /locus_tag="VLF16_10900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HSX71427.1"
                     /translation="MSTPFDPSAFLATCSGRPGVYRMFDEAGKLLYVGKASNLKKRLA
                     SYFRKTG"
BASE COUNT          897 a         1558 c         1713 g          955 t
ORIGIN      
        1 gagccggtgc attcagcgcg cgggcctgca ggtcttcgtc gagcgcgtac agggcgatgc
       61 tggccggcat cagttccagc gcctgcagct gcgcggtgcc gggctgcagg gcatagacgg
      121 cgtcaccgct tagcagcacg ccgtcgtcgg ggccgagcag gcgcaggcag ctggccaggc
      181 ggctgtcgct aaagggcgaa tgggacaaca ggtgcaatgt ggccatcaga tggttaccac
      241 ctggtcgaaa cggtcgagaa gctgggcgag ggcgcgatca tccagctcct ccgctggcag
      301 agtcagctgc gcgtcgctca ggccacgctc ggccaggctg cggctggaga caaacagttc
      361 ttccacaccg aacagcggca gcgcctggag gttggcggtg aggtccttct gctgcagcgc
      421 ggcggactgc tggccggcga ccagctggaa tacgccgtcg tcgagaaaca gcagccccag
      481 cggcaggtcg aaggcgccac cggccagggc gatatccagt gcctcacggg cgctggggcc
      541 tgcccagggc gcctggcggc tgatgatcag catggatttg ctcatcactg gcccccgaag
      601 cagaccaggc ggtccgccat ttgcgcagct tcgtgcagct ggccgaggcc ggacagctcc
      661 cagggcgcgt ccagattggc ggccggcctg ccgtagcgct gcgcctcttc ggcgttcagt
      721 acgccgcggc gcagtgccgc ggcgatgcac accacggcgt cgagattgtg ctgctgcacg
      781 aagttgcgcc attcgcccgc caggtcgagt tcgtcctgcg ggctcaccac gttgctggac
      841 gcactgtgca ccccgtcctg gtagaaaaac aggcggacga tctcgtggcc gccatctacc
      901 gtcgcctggg cgaagcgcaa ggcgcggcgc gaggagggcg catggctggg agcgaacagg
      961 gcgatggcga acttcatggc ggctcggcgg cggtatgaat ggcgcaatga taaacgccga
     1021 ggcatgaaaa agcccgccga agcgggctcg ttaaatagtg cggcgactca gtcgtcgctg
     1081 cccatgatgc cgaagatctg cagcaggctg atgaacaggt tgtagatcga cacgtacagg
     1141 ctgatggtgg ccatcacgta gttgcgttcg ccgccatgaa tgatggcgct ggtctggaac
     1201 aggatgcagg ccgacgagaa cagcacgaag ccggcgctga tggcgagttg caggccgctg
     1261 atctggaaga agaagcccgc gatcatggcg cccagcagga cgaagaagcc ggcggtgatg
     1321 aagccgccga ggaagctcat gtccttgcgg gtggtcagca cgtaggcgga cagaccgaag
     1381 aacaccagtg cggtcatgcc cagggcgctg gcgatcagct cgccgccgtt ggccatgccc
     1441 aggtacatgt tgaggatcgg gcccagtaca tagcccatga aaccggtcag ggcaaaggtg
     1501 gtgagcagac cccagccgct gttgcgcagc ttggcggtga ggaagaacag tccgtagaaa
     1561 ccgaccagag tgacgatgat gccgggatgg gggaggttaa gttgcgcgct gaagaaggcg
     1621 cagagcgcgc tgaacaccag ggtcatggcc agcaggccat aggtgttgcg caggaccttg
     1681 ctggtctcca gctggtccgc gtgcgcgtgg gcgagtgcgt aatcctgttc gtgcatgaca
     1741 tccctcctga ggggctgaaa tccgtggtca ggccgatcat agcagagccc cttgccctgc
     1801 caatgccgag agtttgacag tgtgttgcgt tcgggtagta tggcggcccg caaatgcgga
     1861 ggtgtggccg agtggtttaa ggcagcggtc ttgaaaaccg ccgatgggca actatccgtg
     1921 agttcgaatc tcaccgcctc cgccatccaa attctgccgt cggcagatcg agaaaaggag
     1981 cctttcaggc tcctttttct ttgcccggat ttccatgctc aggtgccggg cggcaccccg
     2041 atgagcgagc agttgttgcc ctcgaacagc cgcccggccg cgacttcccg gcgaatgccg
     2101 cgctgggcct gctggtcgag ctgcacgcta tagacctctt cgagtgcctg ataggcgcgc
     2161 cccaggatga actcgtagtt gggcccgccg ttgaccatca gaaagccggt cggcgcgcca
     2221 tcgagggaag cggtgccggc ccgtactgcc tggaggaagg ccagcccagc ctcgtagccc
     2281 aaagcgaaca ggcgctcgta ctccggcttg tcgccgctgt tgcgggccag taccgcgcag
     2341 gtgaaggccg tccaggacaa atcggctttc aactgctgct cggccgcggc ttgcgcggcc
     2401 ttacagaaca aagtcgtcgc cagcagtacg aagatcagcc gcttgctgaa aagaaatccc
     2461 atgcccgtgc tccgctcggt gatatgacct gtgctgcgtc cggcaaggct agttgatcgc
     2521 cgggcagctg ccgcgcaggt tgtcgtcgaa accgctgatc tgcggcagcg cctcaccctt
     2581 ttcgcccgcg tcgcaggcga tgtggtagat ggtgttctgg ctgtagggca gctcccagga
     2641 acggtaggtc ttggcgatgt cggcaccggt gccggaacgg ccgagcacgg cgcgagggaa
     2701 gtccgtaccg ttgtgaatgc agatctggtt gccggcgacc ggcatcttct ccgattgcag
     2761 cgcgcccggt gccgggatgg aacaccaggc cacgctgacg ttatggtcgc agttgttgat
     2821 cagggtgatg gtgttggcgc cgctgctggt gatctggatg cagccgttca ccgggttcgc
     2881 gccgctttgt acggcaacct ctggcgccga tggctggggc gcactgggcc gggtgccgac
     2941 ggccgccaga cgcgccgcga gttgctcgat gccgcggttc acctgagcca cctgctgtgg
     3001 gctgcgcatc acgccggggc gcttctcctc gatgcgctcg agccgcgccg cctggtcggc
     3061 atagaccgcg gccaggctgt gttcgccctg gctggcgtaa tgcgcacgtc gggtctcggt
     3121 cgcgctcagc tcctgatcga ccgtggctgc gggcaagtcg gccgcagcat ctgcctcgag
     3181 gcgcttcacg cgagccaggc gctgacgcag aagccgggcc tcgccctcga aaccatgccg
     3241 tctggcgaat ccggtggcga gttgcggata gaggtcgccg gcgctttcca cgtattggcc
     3301 cgacaggccg aacagataga ggcgcatggt ctgccggcga tccttcagcg cttcggagcg
     3361 gctggcggct ttgaccagtt ccaggccggg gccggcgtac agcattcgta cgtcgtcacg
     3421 gcgctcgagc atcgcgccgt agtacctggc ggctttcgag gcgtcacgtt ccagccagta
     3481 ttcggccagg cggccctcga ctgcggtcag tgcttcgccc tccagcgggc ggcggtccgt
     3541 tactccctcg gattgctgcc aggcctgcag ggccactcga tggcccgctt ccagggcggc
     3601 gagttcgcgt tcggggaggg cgctctggcg gaagttgtcg gccgccatca cgtaatagga
     3661 ggcggcgctg cttttgaatc cctgacgctc gctacggctg gcatcgttca ggttgagctc
     3721 ggcggcttca cgatggcggc cggcctgagc aaggtccgag ctggtagggc tcctgagcgg
     3781 cagcgagcag ccgatcagca gggccgcgag cccgaatgcc ccggcgattc tgatcaccca
     3841 tcctgtcatc tgccttttcc ttgttcgatt ggttacagct acgtccccgt ttggccgagc
     3901 ccggcgagcc aagttcccgt ttggtttcct tggaggactt cgcccgcgtc atgcttaggc
     3961 atgaattccc gatggccgcc gtctccgctc ggtcttcgtg tgtcataaaa tcaaaataag
     4021 ttattgatat ataagtattt atctttggtt gttgactgcc tgtcgagttt tgcggccggc
     4081 aaccgatgcg tgtaatatcg ccaaattcct gcctggtcgg cattccgaca agggctgcgt
     4141 atcgcaaccg cgatcatcca ggagcagttt tttggcgttt gctttctgac gtgattgcgc
     4201 caagctggat aggtcgatgc gaatggtgcg gtgacgatgc aacgaggtgt cgcttgatta
     4261 aggtgctggt ggtcgacgac cacgatctgg tgagaacggg cattacccgc atgctggccg
     4321 acatcgacgg gctgcaggtg attgggcagg ccgactccgg cgaagaggcg ctcaagaagg
     4381 tgcgcgagct gcgcccggac gtggtgctga tggacgtgaa gatgcccggc atcggcggcc
     4441 tcgaagccac ccgtaaattg ctgcgcagcc atccggacct gaaggtggtc gcggttaccg
     4501 cctgtgaaga tgatctgttt cccacccgcc tgctgcaggc cggcgccgcc ggctatctga
     4561 ccaagggggc ggcgttggag gaaatggtcc aggccatccg catggcgttc gccggacagc
     4621 gttacctgag cccgcagatc gcccagcagc tggcactcaa atccttccag ccgaacaacg
     4681 gcggctcgcc gttcgatctg ctctccgagc gtgaaatcca gatcgccctg atgatcgcca
     4741 actgtcagaa ggtgcagacc atctccgaca agctctgcct gtcgccgaag acggtgaaca
     4801 cctaccgcta tcgcatttac gagaagctct cgatcaccag cgatgtcgag ttggcgctgc
     4861 tggcggtacg ccacggcatg gtcgacgccg tcagttgagc cttaggcaag ccggagaaga
     4921 ggacgtaaac tgcgtcctct tcgtttttcc ggcctatcga tttcgatgat ttccacgccc
     4981 ttcgatccca gcgccttcct ggccacctgc agcggccggc cgggcgtcta tcgcatgttc
     5041 gacgaggcgg gcaagctgct ctacgtcggc aaggcgtcca acctgaagaa gcgcctggcc
     5101 agctatttcc gcaagaccgg cca
//
LOCUS       DATIHC010000655         3229 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_45187, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000655 DATIHC010000000
VERSION     DATIHC010000655.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3229
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45187"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1573)
                     /gene="acnA"
                     /locus_tag="VLF16_10905"
     CDS             complement(<1..1573)
                     /gene="acnA"
                     /locus_tag="VLF16_10905"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HSX71428.1"
                     /translation="MPSLDSLNCRRDLQVGAKTYRYYSLPEAAKRLGDIQRLPMSLKV
                     LLENLLRFEDDHTVSPRDIQAMVDWLGQRRSDHEIQYRPARVLMQDFTGVPAVVDLAA
                     MRAAMAKAGGDPQKINPLSPVDLVIDHSVMVDKYASPSAFGQNVDIEMQRNGERYAFL
                     RWGQNAFANFSVVPPGTGICHQVNLEYLARTVWTKDEDGATFAFPDTLVGTDSHTTMV
                     NGLGVLGWGVGGIEAEAAMLGQPVSMLIPEVIAFKLSGKLREGITATDLVLTVTQMLR
                     KKGVVGKFVEFYGDGLADLPLADRATIANMAPEYGATCGFFPVDDITLGYLRLSGRPE
                     QSVQLVEAYAKAQGLWRLPGHEPVFTDSLALDLGSVEASLAGPKRPQDRVALPDVPAA
                     FEDFLGVQLKPPSKEEGRLLSEGGGGVAVGNAAQVNEAEYHYEGATHRLQHGAVVIAA
                     ITSCTNTSNPSVMMAAGLLAKKAVEKGLTRKPWVKSSLAPGSKVVTEYFKAAGLTPYL
                     DQLGFDLVGYGCTTCI"
     gene            1716..2765
                     /gene="rlmM"
                     /locus_tag="VLF16_10910"
     CDS             1716..2765
                     /gene="rlmM"
                     /locus_tag="VLF16_10910"
                     /EC_number="2.1.1.186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007961801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytidine(2498)-2'-O)-methyltransferase
                     RlmM"
                     /protein_id="HSX71429.1"
                     /translation="MNTLLLHCRPGFEGEVCAEVSDHAARLDVAGYAKSKPSSAHAEF
                     VCSEPQGAERLMRALRFSKLIFPRQWARGGYLQLPETDRISVLLQALAEYPLCGSLWL
                     EVFDTNEGKELSNFCKKFEGPLRKALEKAGKLVDDPSKPRLLLTFKSGREVFLGIAEA
                     NNQALWPMGIPRLKFPREAPSRSTLKLEEAWHTFIPREQWETRLSDEMTGVDLGAAPG
                     GWTYQLVRRGMLVTAIDNGPMAESLMDTGLVTHLMVDGFTWKPKQPVDWMVCDIVEKP
                     ARTTAMVEEWIGGGHCREAVVNLKLPMKQRYAEVCKLLQRLEDAFAERKIKVSIACKQ
                     LYHDREEVTCHLRRH"
     gene            2901..3140
                     /gene="tusA"
                     /locus_tag="VLF16_10915"
     CDS             2901..3140
                     /gene="tusA"
                     /locus_tag="VLF16_10915"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097163 - sulfur carrier activity
                     [Evidence IEA];
                     GO_process: GO:0002143 - tRNA wobble position uridine
                     thiolation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA"
                     /protein_id="HSX71430.1"
                     /translation="MSQQPDAILDACGLNCPEPVMMLHNKVRDLPAGGLLKVLATDPS
                     TKRDIPKFCLFLGHELLEQGEDAGTYLYWIRKKLD"
BASE COUNT          525 a         1081 c         1086 g          537 t
ORIGIN      
        1 cgatgcaggt ggtgcagccg tagccgacca ggtcgaagcc caactggtcc agataaggcg
       61 tcaaaccggc ggccttgaag tattcggtga ccaccttgga gccgggggcc agcgagctct
      121 ttacccaggg cttgcgggtc aggccctttt ccactgcctt cttcgccagc aggccggcgg
      181 ccatcatcac gctggggttg gaggtattgg tgcaggaggt gatcgctgcg atcaccaccg
      241 cgccatgctg caggcggtgg gtggcgcctt catagtggta ttcggcctcg ttgacctggg
      301 cggcattgcc caccgccacg ccgccgccac cttcgctgag caggcggcct tcctccttgc
      361 tcggcggctt cagctgcacg ccgaggaagt cctcgaaggc ggccggcacg tccggcagcg
      421 cgacccggtc ctgcgggcgt ttagggccgg ccaggctggc ttcgacgctg cccagatcca
      481 gcgccaggct gtcggtgaac accggctcgt ggccgggcag gcgccacagg ccctgggcct
      541 tggcgtaggc ttccaccagc tgcacgctct gttccgggcg gccggacagg cgcaggtaac
      601 ccagggtgat gtcgtccacc gggaagaagc cgcaggtggc gccgtactcc ggtgccatgt
      661 tggcgatggt ggcgcggtcg gccagcggca ggtcggcgag gccgtcgccg tagaactcga
      721 cgaatttccc caccacacct ttcttgcgca gcatctgggt gacggtcagc accagatcgg
      781 tggcggtgat gccctcgcgc agcttgccgc tgagcttgaa agcgatcacc tcgggaatca
      841 gcatcgacac cggctggccg agcatggccg cctcggcctc gatgccgccc acgccccagc
      901 cgagcacgcc gaggccgttg accatggtgg tgtgcgagtc ggtgcccacc agggtgtcgg
      961 ggaaggcgaa ggtggcgccg tcttcgtcct tggtccacac ggtgcgggcc aggtattcca
     1021 ggttgacctg gtggcagatg ccggtgcccg gcggcaccac gctgaagttg gcgaaggcgt
     1081 tctgccccca gcgaaggaag gcgtagcgct cgccgttgcg ctgcatctcg atgtcgacgt
     1141 tctggccgaa tgcggaaggc gaggcgtact tgtcgaccat caccgaatgg tcgatcacca
     1201 ggtccaccgg cgacagcggg ttgatcttct gcgggtcacc accggccttt gccatggccg
     1261 cgcgcatggc ggccaggtcg accaccgccg gtacgccggt gaagtcctgc atcagtaccc
     1321 gcgccgggcg gtactggatc tcgtggtcgg aacggcgctg gccgagccag tcgaccatgg
     1381 cctggatatc gcgggggctg acggtgtggt cgtcctcgaa gcgcagcagg ttctccagca
     1441 gcaccttgag cgacatgggc aggcgttgaa tatcgccgag gcgcttggcg gcctccggca
     1501 ggctgtagta gcggtaggtc ttggcgccta cctgcaggtc acgtcggcaa ttcaggctat
     1561 ccagggaagg catggtcggg ctcctgctcg gttgaacctc tgaaactaga ccgtcaggtc
     1621 agctcctgcc actgcactgg acttgccgag cgcgcctggg gttcccgatg gggctcccga
     1681 ctccgctatc atgcgcggcc tgaggagagc cgccgatgaa caccctacta ctgcactgcc
     1741 gccccggttt cgagggcgag gtctgcgccg aggtcagcga ccacgccgcg cgcctggacg
     1801 tggccggcta cgccaagtcc aagcccagca gcgcccatgc cgaattcgtc tgcagcgagc
     1861 cccagggagc cgagcgcctg atgcgcgcgc tgcgcttcag caagctgatc ttcccgcgtc
     1921 agtgggcgcg cggcggctac ctgcagctgc cggagaccga ccgtatcagc gtgctgctgc
     1981 aggcgctggc cgagtatccg ctgtgcggca gcctgtggct ggaggtcttc gataccaacg
     2041 agggcaagga gctgtcgaac ttctgcaaga agttcgaggg gccgctgcgc aaggcgctgg
     2101 aaaaggccgg caagctggtc gacgacccga gcaagccgcg tctgctgctg accttcaaga
     2161 gcggccgcga ggtgttcctc ggcatcgccg aggccaataa ccaggcgctc tggccgatgg
     2221 gtatcccgcg cctgaagttc ccgcgcgagg cgccgagccg ctcgaccctc aagctggaag
     2281 aggcctggca cacctttatt ccgcgcgagc agtgggaaac gcgcctgtcg gacgagatga
     2341 ccggtgtcga cctgggtgcc gcgcccggcg gctggaccta tcaattggtg cgccgcggca
     2401 tgctggttac cgccatcgac aacggcccca tggccgagag cctgatggac accggcctgg
     2461 tcacccacct gatggtcgac ggcttcacct ggaagcccaa gcagccggtg gactggatgg
     2521 tctgcgacat cgtcgagaag ccggcgcgca ccacggcgat ggtcgaggag tggatcggtg
     2581 gggggcactg ccgcgaggcg gtggtcaacc tcaagctgcc gatgaagcag cgctacgccg
     2641 aagtctgcaa gctgctgcag cgcctggaag atgccttcgc cgagcgcaag atcaaggtct
     2701 ccatcgcctg caagcagctg taccacgacc gcgaggaagt cacctgccac ctgcgccgtc
     2761 actgaggcgg tgcggacgcc gcgggtgagc ggcgctcgcc gcccgagccc aggtatcgcc
     2821 gccggccacc gttcggcctc ccgcgctggg cgcgtctgac cctttgcgcc acaatagccg
     2881 cccgttttcc ggagtagccc atgtcccagc aacccgacgc catcctcgac gcctgcggcc
     2941 tcaactgccc ggagccggtg atgatgctgc acaacaaggt gcgcgacctg ccggccggcg
     3001 gcctgctcaa ggtgctcgcc accgacccct cgaccaagcg tgacattccc aagttctgcc
     3061 tgttcctggg ccacgagctg ctggagcagg gcgaggacgc gggcacctat ctgtactgga
     3121 ttcgcaagaa gctcgattga tccaccggcg cccgcgcagg cgccccgagt tccccatgct
     3181 ttactacttc gcctacggct ccaacatgaa ccccgcacgc atgcaggcc
//
LOCUS       DATIHC010000656         3175 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_32300, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000656 DATIHC010000000
VERSION     DATIHC010000656.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3175
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32300"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..340
                     /locus_tag="VLF16_10920"
     CDS             <1..340
                     /locus_tag="VLF16_10920"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251319.1"
                     /note="Catalyzes two discrete reactions in the de novo
                     synthesis of purines: the cleavage of adenylosuccinate and
                     succinylaminoimidazole carboxamide ribotide; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HSX71431.1"
                     /translation="RNLGVGFAHSVIAYEASLKGIGKLELNEQRIAADLDACWEVLAE
                     PIQTVMRRYAIENPYEKLKELTRGKGITPEALLAFIDGLDMPAAAKEELKQLTPASYI
                     GNAVAQAKRI"
     gene            419..1585
                     /locus_tag="VLF16_10925"
     CDS             419..1585
                     /locus_tag="VLF16_10925"
                     /EC_number="1.14.11.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043687 - post-translational protein
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HSX71432.1"
                     /translation="MNPDTPLQLLGGLTPREFLRDYWQQKPLLVRQAIPGFESPISAD
                     ELAGLALEEEVESRLVLEHGAHPWELRRGPFAEDAFSQLPERDWTLLVQAVDQFVPEV
                     AEVLKDFGFLPSWRIDDLMISFAAPGGSVGPHFDNYDVFLLQAEGQRRWKIGQMCDAD
                     SKLLQHADLRILADFEQTDEWVLEPGDMLYLPPRLAHYGIAEDDCMTYSVGFRAPSAA
                     EVLTHFTDFLAQFLPDEERYSDAGMAPISDSHQIQQDALDRLKALLAEHMSDERLLLT
                     WFGQFMTEPRYPELVNGPEIEEQDFLGALQDGAVLVRNPSARLAWSEVDVGLVLFASG
                     QSRLLPAHLRELLRLICAAEALHGDNLAPWLADEDGRTLVRELVQQGSLEFADE"
     gene            1578..2003
                     /locus_tag="VLF16_10930"
     CDS             1578..2003
                     /locus_tag="VLF16_10930"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010483921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSX71433.1"
                     /translation="MSDIHVRLAHWQKDNADLRRIREAVFVAEQAVPAELEWDDEDIE
                     AMHFLACEGDYPIGTARLLADGQIGRVSVLKDWRGLKVGDALMRAAIEAAEERGQREQ
                     RLSAQVHAAAFYERLGFCIEGDEYLEAGIPHVMMVRHSD"
     gene            2013..2645
                     /locus_tag="VLF16_10935"
     CDS             2013..2645
                     /locus_tag="VLF16_10935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003240667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone acetyltransferase HPA2"
                     /protein_id="HSX71434.1"
                     /translation="MSEENAPIDENEPELPAIDFQSPGRFSVRNPQSQPGIASEPREP
                     APFVLGGHGDLERFTRPEQAQAHALALLQQAQFSLCLYSPDLEAWLYSHSSVQDACAR
                     FLLASPKNRLRILVRDAGKPVKQGHRLLNLAQRITSNLHIRRINPDHPIDESAYLLAD
                     DRGLLLREVAEQYAGYALYNDPGRVRQRQAQFDRAWDISLSDPDLRSFLL"
     gene            2642..>3175
                     /locus_tag="VLF16_10940"
     CDS             2642..>3175
                     /locus_tag="VLF16_10940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003090446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secretin N-terminal domain-containing protein"
                     /protein_id="HSX71435.1"
                     /translation="MTLRACLLALSLGLSLPLQAATELIQLNYRTAEDVLPVVQSALD
                     GQGKVSPYGNQLVINASPEKIQEVRDLLQQLDTAPRRLLISLDTSESSFQDRDGYRVD
                     GSASAGDAEVIAGRGEVHGRDQVRIIRRSTDSRSGGTQQVQATEGYPALIQVGQSVPL
                     TTTSVGPYGQVYQNTEYR"
BASE COUNT          566 a         1105 c         1006 g          498 t
ORIGIN      
        1 gcgcaacctc ggcgtcggct tcgcccatag cgtcatcgcc tacgaagcca gtctcaaggg
       61 catcggcaag ctggagctga acgagcaacg gatcgccgcc gatctggacg catgctggga
      121 agtcctcgcc gagccgatcc agaccgtgat gcgtcgctac gccatcgaaa acccctacga
      181 aaagctcaag gagctgaccc gcggcaaggg catcaccccg gaggcgctgc tcgccttcat
      241 cgatggcctg gacatgccgg ctgccgccaa ggaggagctc aagcagctca ccccggcgag
      301 ctacatcggc aacgccgtcg cccaggccaa gcgcatctga gcgccaccag cctctccaac
      361 gcccggctga gccgggcgtt tttgtttcag ccatttcatc tctttcaagg gcttagccat
      421 gaatcctgat actcctctgc agctgctggg cggcctcact cctcgcgagt tcctgcgcga
      481 ctactggcaa cagaagcccc tgctggtccg tcaggccatc cccggcttcg aaagcccgat
      541 cagcgccgac gaactggccg gcctggcgct ggaagaggaa gtcgaatcgc gcctggtgct
      601 ggagcacggc gcccacccgt gggaactgcg ccgcggcccg ttcgccgagg acgccttcag
      661 ccagttgccc gaacgcgact ggaccctgct ggtgcaggcc gtcgaccagt tcgtgccgga
      721 agtggccgaa gtgctcaagg acttcggctt tctgcccagc tggcgtattg acgacctgat
      781 gatcagcttc gctgcgcccg gcggcagcgt aggcccgcac ttcgacaact acgacgtgtt
      841 cctgctgcag gccgaaggcc agcgccgctg gaagatcggc cagatgtgcg acgccgacag
      901 caagctgctg cagcacgccg atctgcgcat cctcgccgac ttcgagcaga ccgacgaatg
      961 ggtgctggaa cccggcgaca tgctctatct gccgccgcgc ctggcccact acggcatcgc
     1021 cgaagacgac tgcatgacct actcggtggg cttccgcgcg ccgagcgccg ccgaggtgct
     1081 gactcacttc accgacttcc tggcccagtt cctgcccgac gaggagcgct acagcgacgc
     1141 cggcatggcg ccgatcagcg actcgcacca gatccagcag gatgccctcg accgcctcaa
     1201 ggccctgctg gccgagcaca tgagcgacga gcgcctgctg ctgacctggt tcggccagtt
     1261 catgaccgag ccgcgctatc cggaactggt caacggcccc gagatcgagg aacaggactt
     1321 cctcggcgcc ctgcaggatg gtgccgtgct ggtgcgtaat cccagcgcgc gcctggcctg
     1381 gagcgaggtg gacgttggcc tggtgctgtt cgccagcggc cagagccgcc tgctgccggc
     1441 ccacctgcgc gagctgctgc gcctgatctg cgccgccgaa gcgctgcatg gcgacaacct
     1501 ggcgccttgg ttggccgacg aggacgggcg tacactggta cgcgaactgg tccagcaagg
     1561 aagtttggag tttgctgatg agtgatatcc acgtccgcct cgcccactgg cagaaggaca
     1621 atgccgacct gcgacgcatc cgggaggcgg tgttcgtcgc ggaacaggcg gtgccggccg
     1681 agctcgaatg ggatgacgag gacatcgagg ccatgcactt cctcgcctgc gagggcgact
     1741 acccgatcgg taccgcgcgc ctgctggcgg acggtcagat cggccgggtt tcggtgctca
     1801 aggactggcg cggcttgaaa gtgggtgatg cgctgatgcg cgccgccatc gaggccgccg
     1861 aagagcgtgg tcagcgcgag cagcggctca gcgcccaggt tcacgccgcc gccttctacg
     1921 agcgcctggg cttctgcatc gagggcgacg agtatctcga ggccggtatt ccccacgtga
     1981 tgatggtgcg ccatagcgac taggatcgaa gcatgagcga agaaaacgcc ccgatcgacg
     2041 agaacgagcc cgagctaccg gccatcgatt tccagtcgcc ggggcgtttt tccgtgcgca
     2101 atccgcagag ccagcccggc atcgccagcg agccgcgcga accggcgccg tttgtcctcg
     2161 gcgggcatgg tgacctggag cgtttcaccc gcccggaaca ggcccaggcc cacgccctgg
     2221 cgctgttgca gcaggcgcaa ttcagtctgt gcctgtacag ccccgatctt gaggcctggc
     2281 tgtacagcca cagcagcgtg caggacgcct gcgcacggtt ccttctggcc agcccgaaga
     2341 accgcctgcg catcctggta cgcgatgccg gcaagccggt gaagcagggt catcgcctgc
     2401 tcaacctcgc ccagcgcatc accagcaacc tgcacatccg caggatcaat cccgatcacc
     2461 ctatcgacga aagcgcctac ctgctggcgg acgatcgcgg cctgctgctg cgtgaagtgg
     2521 cggagcaata cgcaggctac gccctgtaca acgaccccgg ccgcgtgcgc cagcgccagg
     2581 cgcagttcga ccgggcctgg gacatcagcc tttccgaccc cgacctgcgg agcttcctgc
     2641 tatgaccttg cgcgcctgcc tgcttgccct gtcgctcggc ctcagcctgc ctctgcaggc
     2701 ggccaccgag ctgatccagc tcaactaccg caccgccgag gatgtgctgc cagtggtgca
     2761 gtcggcgctc gacggccagg gcaaggtcag cccctacggc aaccagctgg tgatcaacgc
     2821 ctcgccggag aagatccagg aagtacgcga tctgctgcag cagctggaca ccgcgccgcg
     2881 ccgcctgctg atcagcctcg acaccagcga aagcagcttt caggaccgcg acggctaccg
     2941 tgtcgatggc agcgccagcg caggcgacgc ggaggtcatc gccgggcgtg gcgaggtgca
     3001 tggccgcgac caggtgcgaa tcatccgccg ctccaccgac agccgcagcg gtggcacaca
     3061 gcaggtgcag gccaccgagg gttacccggc actgatccag gtcggccaga gcgtgccgct
     3121 gaccaccacc agcgtcggtc cttacggcca ggtgtaccag aacaccgagt accgc
//
LOCUS       DATIHC010000657         2951 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11127, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000657 DATIHC010000000
VERSION     DATIHC010000657.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2951
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11127"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..590
                     /locus_tag="VLF16_10945"
     CDS             <1..590
                     /locus_tag="VLF16_10945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007994031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TIGR03862 family flavoprotein"
                     /protein_id="HSX71436.1"
                     /translation="AGAPLKNVTLALDDEAPRRGEFVLTEHGIEGSLVYALSAAIRQR
                     IEQHGSARIYLDLQPDRDLEKVTALLSKPRGSASMAKHLHRQLGLDGAKAALLRELTS
                     ADDFADMSRLAQAIKSLPIELLRTRPLDEAISSAGGVTFAALDEHLMLRQLPGIFCAG
                     EMLDWEAPTGGYLLTACFASGRAAGLGALEWLQQQ"
     gene            complement(678..>2951)
                     /locus_tag="VLF16_10950"
     CDS             complement(678..>2951)
                     /locus_tag="VLF16_10950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016495024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YgiQ family radical SAM protein"
                     /protein_id="HSX71437.1"
                     /translation="DYSKYWAECFGPAPFLPMSREEMDQLGWDSCDIIIVTGDAYVDH
                     PSFGMAIIGRLLEAQGFRVGIIAQPDWRSKDDFMKLGQPNLFFGVAAGNMDSMINRYT
                     ADKKVRSDDAYTPGGLAGARPDRASLVYSQRCKEAYSQTPVILGGIEASLRRIAHYDY
                     WQDKVRRSILMDATADILLYGNAERAVVEIAQRLAGGESVEQMTDIRGTAFVRRDTPQ
                     DWFEIDSTRIDRPGKIDKIINPYVNTQDTAACAIEQEKGAAEDPNEAKVIELLPNPKL
                     TRERTVIRLPSFEKVRNDPVLYAHANRVLHLETNPGNARALVQKHGEVDVWFNPPPIP
                     MSTEEMDYVFGMPYARVPHPAYGKAKIPAYEMIRFSVNIMRGCFGGCTFCSITEHEGR
                     IIQNRSHESILAEIEEMKKVPGFTGVVSDLGGPTANMYRIACKSPEIEKHCRKPSCVF
                     PGICENLNTDHSSLIELYRKARALPGVKKILIASGLRYDLAVESPEYVKELVTHHVGG
                     YLKIAPEHTEEGPLNQMMKPGIGSYDKFKRMFEKYSKEAGKEQYLIPYFIAAHPGTTD
                     EDMMNLALWLKRNGFRADQVQAFYPSPMASATAMYHSGKNPLRKVTYKSDGVTIVKSE
                     EQRRLHKAFLRYHDPKGWPMLRAALERMGRSDLIGNGKHQLIPTYQPQTDEYQSARRK
                     NSTPAGSKKVAGNGGDKGKTVGRILTQHTGLPPRGSDGSKSWDKREQAKAAAEARRKA
                     EKSGAGKKPSKRPVAPR"
BASE COUNT          422 a          943 c         1028 g          558 t
ORIGIN      
        1 tcgccggcgc gccgctgaag aacgtgaccc tggcgctgga cgacgaggcg ccacggcgcg
       61 gcgaattcgt cctgaccgaa cacggcatcg agggcagcct ggtctacgcg ctatccgccg
      121 ccattcgcca acgcatcgag cagcacggca gcgcgcgaat ctatctggac ctgcagccgg
      181 accgcgatct ggagaaagtc actgcgctgc taagcaaacc gcgcggctcg gcgtcgatgg
      241 ccaagcacct gcaccgccag ctcggcctgg acggggccaa ggccgcgctg ctgcgcgaac
      301 tgaccagcgc cgacgacttc gccgacatga gccgtctggc gcaggcgatc aagtcactgc
      361 cgatcgaact gctgcgcacc cgcccactgg acgaggccat ctccagcgcc ggcggcgtga
      421 ccttcgcggc gctggacgaa cacctgatgc tgcgccagct gcccggcatc ttctgcgccg
      481 gcgagatgct cgactgggag gcgcccaccg gcggctacct gctcaccgcc tgcttcgcca
      541 gcggccgcgc cgccgggctg ggtgcgctgg agtggcttca gcagcagtaa cctgatgctt
      601 tcgggcccca tccgtagggt gggctcagga gcgcagcgaa cagcccaccg agcccagaag
      661 gtgtactgcc tgcggattta gcgcggggcg accgggcgct tgctgggctt cttgccggcg
      721 ccggacttct ccgccttgcg ccgggcctcg gcggcggcct tggcctgttc gcgcttgtcc
      781 cagctcttgc tgccgtcgct gccgcgcggc ggcaggccgg tgtgctgggt gaggatacgg
      841 ccgaccgtct tgcccttgtc gccgccgttg ccggcgacct tcttgctgcc ggccggggtg
      901 gagttcttgc gtcgggcgct ctggtactcg tcggtctgcg gctggtaggt cgggatcagc
      961 tgatgcttgc cgttgccgat caggtcgctg cggcccatgc gttccagcgc ggcgcgcagc
     1021 atcggccagc ccttggggtc gtggtagcgc aggaaggcct tgtgcaggcg gcgctgctcc
     1081 tcgctcttga cgatggtcac gccgtcgctc ttgtaggtga ccttgcgcag cgggttcttg
     1141 cccgagtggt acatggcggt ggcgctggcc atgggcgacg ggtagaaggc ctgcacctgg
     1201 tcggcgcgga agccattgcg cttgagccac agggcgaggt tcatcatgtc ctcgtcggtc
     1261 gtcccaggat gggcggcgat gaagtacggg atcagatact gctctttgcc tgcttccttc
     1321 gagtacttct cgaacatgcg cttgaacttg tcgtagctgc cgatgcccgg cttcatcatc
     1381 tgattcagcg ggccttcttc ggtgtgctcc ggggcgatct tcaggtagcc accgacgtgg
     1441 tgggtgacca gttccttgac gtactccggc gattccacgg ccaggtcata acgcaagccc
     1501 gaggcgatca ggatcttctt cacccccggc agcgcgcggg ccttgcggta cagctcgatc
     1561 aaggacgagt ggtcggtgtt gaggttctcg cagatgcccg ggaacacgca cgacggcttg
     1621 cggcagtgct tctcgatctc cgggctcttg caggcgatgc ggtacatgtt ggcggtcggc
     1681 ccgccgaggt cggagaccac gccggtaaag cccggcacct tcttcatctc ctcgatctcg
     1741 gcgaggatcg attcgtgcga gcggttctgg atgatgcggc cctcgtgctc ggtgatcgag
     1801 cagaaggtgc agccgccgaa gcagccacgc atgatgttca ccgagaagcg gatcatctcg
     1861 taggccggaa tcttcgcctt gccatacgcc gggtgcggca cgcgcgcata gggcatgccg
     1921 aacacgtagt ccatttcctc ggtgctcatc gggatgggcg gcgggttgaa ccagacgtcc
     1981 acctcgccgt gcttctgcac cagggcgcgg gcgttgcccg ggttggtctc caggtgcagc
     2041 acgcggttgg cgtgggcgta gagcaccggg tcgttgcgca ccttctcgaa ggacggcagg
     2101 cggatcaccg tccgctcgcg ggtcagcttc gggttgggca gcagctcgat gaccttggcc
     2161 tcgttggggt cctcggccgc gcccttctcc tgctcgatgg cgcaggcggc ggtgtcctgg
     2221 gtgttgacgt agggattgat gatcttgtcg atcttgcccg ggcggtcgat gcgcgtggag
     2281 tcgatctcga accagtcctg cggggtatcg cggcgcacga aggcggtgcc acggatatcg
     2341 gtcatctgct cgacgctctc gccgccggcc aggcgctggg cgatctcgac cacggcgcgc
     2401 tcggcgttgc cgtacagcag gatgtcggcg gtggcgtcca tcaggatcga gcgacgcacc
     2461 ttgtcctgcc agtagtcgta gtgggcgatg cggcgcagcg aggcctcgat gccgccgagg
     2521 atcaccgggg tctggctgta ggcttccttg cagcgttggc tgtacaccag gctggcgcgg
     2581 tccgggcggg cgccggccag gccgccgggg gtgtaggcgt cgtccgagcg gaccttcttg
     2641 tccgcggtgt agcggttgat catcgagtcc atgttgcccg ccgccacgcc gaagaacagg
     2701 ttcggctggc cgagcttcat gaagtcgtcc ttcgagcgcc agtccggttg ggcgatgatg
     2761 ccgacgcgga agccctgggc ctcgagcagg cggccgatga tggccatgcc gaacgaggga
     2821 tgatcgacgt aggcgtcacc ggtgacgatg atgatgtcgc agctgtccca gccgagctga
     2881 tccatctctt cccggctcat cggcaggaag ggcgcaggcc cgaaacactc ggcccagtac
     2941 ttggagtagt c
//
LOCUS       DATIHC010000658         3025 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_24202, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000658 DATIHC010000000
VERSION     DATIHC010000658.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3025
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24202"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..335)
                     /locus_tag="VLF16_10955"
     CDS             complement(<1..335)
                     /locus_tag="VLF16_10955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HSX71438.1"
                     /translation="MPYRHILIAVDLTEECHPVAERAMAIAATNGAKVSLVHIVEPMA
                     MAFGGDVPMDLSLLQQQQFDQAREHLQSFAGRYPALGPDQRHLAYGQPRQELHRLAEE
                     QGCDLIVVG"
     gene            418..855
                     /locus_tag="VLF16_10960"
     CDS             418..855
                     /locus_tag="VLF16_10960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003153149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71439.1"
                     /translation="MTWWIVLLLVGVALSPLVWLRPSHRQRGQMELRLAARRMGLGMQ
                     LGRQEWPHWLEGNPPERCAHYHRGRRPGRSDSWAYWQTAPGQWCNQWREPCADAAMLE
                     RLHGLPADVYKVEADTQMVSLYWGERGGENELRQVAEFLTSAA"
     gene            1185..>3025
                     /gene="fadB"
                     /locus_tag="VLF16_10965"
     CDS             1185..>3025
                     /gene="fadB"
                     /locus_tag="VLF16_10965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003857 - 3-hydroxyacyl-CoA dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0004165 - delta(3)-delta(2)-enoyl-CoA
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0004300 - enoyl-CoA hydratase activity
                     [Evidence IEA];
                     GO_function: GO:0008692 - 3-hydroxybutyryl-CoA epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009062 - fatty acid catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid oxidation complex subunit alpha FadB"
                     /protein_id="HSX71440.1"
                     /translation="MIYEGKAITVKALEGGIVELNFDLKGESVNKFNRLTLSELRQSV
                     DAIKADGSIKGVIVTSGKDVFIVGADITEFVENFKLPDEELVAGNLEANKIFSDFEDL
                     AVPTVVAINGIALGGGFEMCLAGDYRVASETAKIGLPEVKLGIYPGFGGTVRLPRVIG
                     SDNAIEWIASGKESKAADALKVGAVDAVVAPAKLKDAALDLIKRAISGELDYKAKRQP
                     KLEKLKLNAIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAA
                     GFVKLAKTSVAESLVGLFLNDQELKKKAKKHDEIARDVKLAAVLGAGIMGGGIAYQSA
                     SKGTPILMKDIREEGIQMGLDEASKLLGKRVEKGRMTPAKMAEALNAIRPTMSYGDFK
                     EVDIVVEAVVENPKVKHAVLAEVEGQVKDDAIIASNTSTISISFLAQALKRPENFVGM
                     HFFNPVHMMPLVEVIRGEKSSEVAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYF
                     GGFAKLLEFGVDFVRIDKVMEKFGWPMGPAYLSDVVGIDTGHHGRDVMAEGFPDRMAV
                     EGKTAVDVMYDANRLGQKNGKGFYAYEMDKRGKPKKVQDPQAYEILKP"
BASE COUNT          578 a          941 c          985 g          521 t
ORIGIN      
        1 ctgccgacga cgatcagatc gcagccctgt tcctcggcca ggcgatgcag ctcctggcga
       61 ggctggccgt aggccaggtg gcgctgatcg gggccgagcg ccgggtagcg cccggcgaag
      121 ctctgtaggt gctcacgggc ctggtcgaat tgctgctgct ggagcagcga caggtccatc
      181 ggtacgtcgc cgccgaaggc catggccatg ggctcgacga tgtgcacgag ggaaaccttg
      241 gcgccgttgg tggcggcgat ggccatggca cgctcggcga ccggatggca ttcctcggtc
      301 aggtcgacgg cgatcaggat gtgtcggtac ggcatctgag tctcctccac tgagtggcat
      361 gcttgcagta tggtgctgct cccttcataa cacaggcttt ttccccgcgt gaacgatatg
      421 acctggtgga tcgtgctttt gctcgtcggt gttgcgctca gtccactggt ctggctgcgc
      481 ccgtcacatc gccagcgcgg gcagatggaa ctgcgcctgg cggcgcggcg catgggcctc
      541 ggcatgcagc tcgggcggca ggaatggccg cactggctgg agggcaatcc gccggagcgc
      601 tgcgcccact accatcgtgg ccgccggccg ggccgcagcg acagttgggc ctactggcag
      661 accgcgccgg ggcagtggtg caaccagtgg cgcgagccgt gcgccgacgc cgcgatgctc
      721 gaacgcctgc acggcctgcc ggcggacgtg tacaaggtcg aggccgatac gcagatggtc
      781 tcgctgtact ggggcgagcg cggtggcgag aacgagctgc gtcaggttgc cgagttcctg
      841 acctccgcgg cttgaaccgg atcgctcgct cgccctcgaa tagacggtga gcggcgcgcg
      901 tggccggatt tatgattctg gtcattccgt gacgccgcac tcatccgagg cgcctgcgac
      961 gggcaattga caattgccgg gttttcactg aatgtacgcc cacccaaatc aaacgggcgt
     1021 atgaatcgag cgtttctgcc taggcagcgc ctttacagcc cgattatcgc gtcggcgggt
     1081 gtgtcggatc gattgggact atgctcgacg gccatgccta gagcggcccc ggccggttgg
     1141 ctccgatgtg tacagttcag cttccatacc gtggagatca gttgatgatt tacgaaggta
     1201 aagccatcac ggttaaggct cttgagggcg gcatcgtcga attgaatttc gacctcaagg
     1261 gtgagtccgt taacaagttc aaccgtctga ccctgagcga gctgcgccag tcggtcgacg
     1321 ccatcaaggc cgacggttcg atcaagggcg taatcgtcac cagcggcaaa gacgtgttca
     1381 tcgtcggcgc cgacatcacc gaattcgtcg agaacttcaa gctgcccgac gaagagctgg
     1441 ttgccggcaa cctcgaagcc aacaagatct tcagcgattt cgaagacctg gccgttccga
     1501 ccgtcgtcgc catcaatggc atcgccctgg gtggcggttt cgagatgtgc ctggccggcg
     1561 actaccgcgt cgcttccgag accgccaaga tcggcctgcc ggaagtcaaa ctgggcatct
     1621 acccgggctt cggcggcacc gtgcgcctgc cgcgcgtgat cggtagcgac aacgccatcg
     1681 aatggatcgc ctccggtaag gaaagcaagg ccgccgacgc cctgaaagtg ggtgccgtcg
     1741 acgccgtcgt ggcgcctgcc aagctgaagg acgccgccct ggacctgatc aagcgcgcca
     1801 tctccggcga gctggactac aaggccaagc gtcagccgaa gctggagaag ctgaagctca
     1861 acgccatcga gcagatgatg gccttcgaga ccgccaaggg cttcgtcgcc ggtcaggccg
     1921 gcccgaacta cccggccccg gtcgaagcca tcaagaccat ccagaaggcc gccaacttcg
     1981 gccgcgacaa ggctctggaa gtcgaggccg ccggcttcgt caaactggcc aagacctcgg
     2041 tcgccgagag cctggtcggt ctgttcctga acgatcagga gctgaagaag aaggccaaga
     2101 agcacgacga gatcgcgcgt gacgtgaaac tggccgccgt gctcggcgcc ggcatcatgg
     2161 gtggcggcat cgcctaccag tccgcctcca agggcacccc gatcctgatg aaggatatcc
     2221 gcgaagaggg tatccagatg ggcctggacg aggcctccaa gctgctcggc aaacgcgtcg
     2281 agaagggccg catgaccccg gccaagatgg ccgaggcgct caatgcgatc cgtccgacca
     2341 tgtcctatgg cgacttcaag gaagtcgaca tcgtggtcga ggccgtggtc gagaacccga
     2401 aggtcaagca cgccgtgctg gccgaggtgg aaggccaggt gaaggacgat gcgatcatcg
     2461 cctccaacac ctcgaccatt tccatcagct tcctggccca ggccctgaag cgtccggaaa
     2521 acttcgtcgg catgcacttc ttcaacccgg tgcacatgat gccgctggtt gaggtgatcc
     2581 gcggcgagaa gtccagcgaa gtggccgtgg ccaccaccgt ggcctacgcc aagaagatgg
     2641 gcaagaaccc gatcgtggtc aacgactgcc ccggcttcct ggtcaaccgc gtgctgttcc
     2701 cgtacttcgg cggcttcgcc aagctgctgg aattcggtgt cgacttcgtg cgcatcgaca
     2761 aggtcatgga gaagttcggc tggcccatgg gcccggccta cctgtccgac gtggtcggca
     2821 tcgacaccgg ccaccacggc cgggacgtga tggccgaagg cttcccggac cgtatggccg
     2881 tggaaggcaa gaccgccgtc gacgtgatgt acgacgccaa tcgcctgggc cagaagaacg
     2941 gcaagggctt ctacgcctac gaaatggaca agcgcggcaa gccgaagaaa gtccaggacc
     3001 cgcaggcgta cgagatcctc aagcc
//
LOCUS       DATIHC010000659         1651 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_45202, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000659 DATIHC010000000
VERSION     DATIHC010000659.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1651
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45202"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..436
                     /locus_tag="VLF16_10970"
     CDS             <1..436
                     /locus_tag="VLF16_10970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSX71441.1"
                     /translation="FDALRGAAEPHVLGMNVRWQCDARLGELLCNRDTLVGAVLNLIE
                     NAIQAGGREASLKVHLYTRGNDLRLSISDNGPGIAPATLARLGEPFFTTKTTGTGLGL
                     AVVQAVVRAHQGEVRLRSRVGRGTCVTLVLPLIHAAQPDIQE"
     gene            440..>1651
                     /gene="fleR"
                     /locus_tag="VLF16_10975"
     CDS             440..>1651
                     /gene="fleR"
                     /locus_tag="VLF16_10975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016851890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent response regulator
                     transcription factor FleR"
                     /protein_id="HSX71442.1"
                     /translation="MTAKVLLVEDDRALREALADTLLLGGHEFRAVECAEAAVEALTQ
                     EAFGLVISDVNMPGMDGHQLLALIRSRYPQLPVLLMTAYGAVERAVEAMRQGAADYLV
                     KPFEPRTLLELVARHAQGRLGSEGEGPVAFEPASRQLLELAARVARSDSTVLISGESG
                     TGKEVLARYIHQQSGRAEGPFIAINCAAIPDNMLEATLFGHEKGAFTGAIAAQPGKFE
                     LADGGTLLLDEISEMPLGLQAKLLRVLQEREVERVGARKPISLDIRVLATTNRDLAGE
                     VAAGRFREDLYYRLSVFPLAWRALRERPADILPLAERLLTKHVKKMNHAAVRLSPQAR
                     SALLAHAWPGNVRELDNAIQRALILQQGGLIEPHDLCLTAPIGMAPMPAAPSLSLVPG
                     APLGAGAQAGEE"
BASE COUNT          256 a          584 c          564 g          247 t
ORIGIN      
        1 gttcgatgcc ctgcgcggcg ccgcggaacc tcacgtgctg ggcatgaacg tgcgctggca
       61 gtgcgacgcc cgcctgggcg agctgctgtg caaccgcgac acgctggtcg gcgccgtgct
      121 caacctgatc gagaacgcca tccaggccgg tgggcgcgag gcgagcctca aggttcacct
      181 gtacacgcgc ggcaatgacc tgcgcctgag cattagcgac aacggcccgg gcatcgcgcc
      241 cgccacgctg gcgcgcctgg gcgaaccctt cttcaccacc aagaccaccg gcaccggctt
      301 gggcctcgcc gtagtccagg cggtggtgcg cgcccaccag ggcgaggtgc gcctgcgctc
      361 gcgcgtcggc cgcggcacct gcgtcaccct cgtactgccg ctgatccacg cggcgcaacc
      421 ggatattcag gagtaagcca tgaccgccaa ggttctgctg gtcgaagacg accgcgcgct
      481 gcgcgaggcc ctcgccgaca ccctgctgct gggcggccat gaattccggg ccgtggagtg
      541 cgcagaggcg gctgtcgagg cgctgaccca ggaggcgttt ggcctggtga tcagcgacgt
      601 caacatgccg ggcatggacg gccaccaatt gctcgcgctg atccgcagcc gctatccgca
      661 gctgccggtg ctgctgatga ccgcctacgg cgccgtcgag cgcgcggtgg aggccatgcg
      721 tcagggcgcc gccgattatc tggtcaagcc tttcgagccc agaaccctgc tcgaactggt
      781 ggctcgccac gcccaaggcc gtctcggcag cgagggcgag gggccggtgg ccttcgagcc
      841 ggccagccgc cagctgctgg aactggccgc acgggtcgcc aggagcgatt cgaccgtgct
      901 catctccggc gaatccggca ccggcaagga agtgctggcg cgctatatcc accagcagtc
      961 cggccgtgcg gaaggtccct tcatcgccat caactgcgcg gcgattcccg acaacatgct
     1021 cgaggccact ctgttcggcc acgagaaggg cgccttcacc ggcgccatcg ccgcccagcc
     1081 gggcaagttc gagctggccg acggcggtac cctcctgctg gacgagattt ccgagatgcc
     1141 gctgggcctg caggccaagt tgctgcgggt gctgcaggaa cgcgaagtgg agcgtgtcgg
     1201 cgcgcgcaag ccgatcagcc tggatatccg cgtgctggcg accaccaacc gcgatctggc
     1261 cggtgaagtg gccgccggac gcttccgtga agacctctat taccggctgt cggtattccc
     1321 gctggcctgg cgcgcgctgc gcgagcggcc cgccgacatc ctgccgttgg ccgagcggct
     1381 gctgaccaag cacgtcaaaa aaatgaacca cgccgccgtg cgactttcgc cccaggctcg
     1441 ctcggcgctg ctggcccatg cctggccggg caacgtgcgg gaattggaca acgccatcca
     1501 gcgcgcgctg atcctgcagc agggcggtct gatcgagccg cacgacctgt gtctgaccgc
     1561 ccctatcggc atggcgccga tgccggccgc gccgagcctg agcctggtgc cgggagcgcc
     1621 gctcggcgca ggcgcccagg ctggcgagga g
//
LOCUS       DATIHC010000660         2259 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_1003, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000660 DATIHC010000000
VERSION     DATIHC010000660.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2259)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2259)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2259
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1003"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..650)
                     /locus_tag="VLF16_10980"
     CDS             complement(<1..650)
                     /locus_tag="VLF16_10980"
                     /inference="COORDINATES: protein motif:HMM:NF015722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUMF1/EgtB/PvdO family nonheme iron enzyme"
                     /protein_id="HSX71443.1"
                     /translation="MKTGSLVMLGTLLLPGCGPTTPAPQVALVDIPAGVVRYQLPGAA
                     TPVAERIDGFAIMRRQVSQAEYAACVADGACAAPDGPARGTVAADLPAVGLSWLDAGA
                     YAAWLSRRRGERYRLPRYGEWVLAAGSAYEDETPIIDDPRDPSRRWLAEYEREARRGV
                     PSVQLRRFGGYGESSSGLLDVAGNVWEWTDSCFGPALGGFCGIRVAAGRHPSGLSD"
     gene            complement(661..1737)
                     /gene="nirK"
                     /locus_tag="VLF16_10985"
     CDS             complement(661..1737)
                     /gene="nirK"
                     /locus_tag="VLF16_10985"
                     /EC_number="1.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019340092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050421 - nitrite reductase (NO-forming)
                     activity [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper-containing nitrite reductase"
                     /protein_id="HSX71444.1"
                     /translation="MNVLKPLAMVVSLVVVGQALAAGADGLQRVKVDLVAPPQVHAHE
                     QAVTRAPQVVQFRMVIQEKKVVIDNQGTTLQAMTFDGSMPGPTMVVHEGDYVELTLVN
                     PASNSMPHNIDFHAATGALGGAKLTFVAPGQEAVLRFKADRSGTFVYHCAPEGMVAWH
                     VLAGMSGTLMVLPREGLKDPDGNSLHYDRAYTIGEFDLYIPKGPDGKYKDYPSLMASY
                     PDTREAMRTLTPTHVVFNGKVGALTGENAMTAKVGETVLFIHSQANRDTRPHLIGGHG
                     DWVWETGKFANAPEKNLETWFIRGGSAGAALYTFKQPGVYAYVNHNLIEAMELGAAGH
                     VKVEGAWNDDLMKQVKAPGPITRE"
     gene            1944..>2259
                     /locus_tag="VLF16_10990"
     CDS             1944..>2259
                     /locus_tag="VLF16_10990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HSX71445.1"
                     /translation="MATANPSRGYPLGIAAYLIWGLFPLYFKAIQAVPALEIIAHRAI
                     WSALFGALLLALWKHPGWWRELRDNPKRLAVLTASGLLIASNWLVYVWAVNNGRMLEA
                     SLG"
BASE COUNT          317 a          803 c          763 g          376 t
ORIGIN      
        1 aagtcggaga gcccgctcgg atgccggccg gccgccacgc gaatgccgca gaaaccgccc
       61 agcgccgggc cgaagcagct gtcggtccac tcccagacat tgccggccac gtcgagcagg
      121 ccgctggaac tctcgccgta gccgccgaag cgccgcaact gcaccgaggg cacgccgcgg
      181 cgcgcctcgc gctcgtactc ggcgagccag cggcgtgaag ggtcgcgggg atcgtcgatg
      241 atcggcgtct cgtcctcata ggccgagccc gccgccagca cccattcgcc atagcgcggc
      301 aggcgatagc gttcgccgcg gcgccgcgac agccaggcgg cataggcgcc ggcgtccagc
      361 cagctgaggc cgaccgccgg caggtcggcg gcgacggtac cgcgcgccgg gccgtccggc
      421 gccgcgcagg cgccatcggc gacgcaggcc gcgtactcgg cctggctgac ctggcggcgc
      481 atgatggcga agccgtcgat ccgctccgcc accggcgtcg ccgcgcccgg caactggtag
      541 cgcaccacgc cggccgggat atccaccagc gccacctgcg gtgctggcgt cgtcggcccg
      601 cagcccggca acagcagcgt gccgagcatc accaggctcc ccgtcttcac gctgcgtccc
      661 tcactcgcgg gtgatcgggc ctggcgcctt gacctgcttc atcaggtcgt cgttccacgc
      721 gccctcgacc ttgacgtgcc cggcggcgcc cagctccatc gcctcgatca ggttgtggtt
      781 gacataggcg tacaccccgg gttgcttgaa ggtgtacagc gccgcgcccg ccgagccgcc
      841 gcggatgaac caggtctcca ggttcttctc cggcgcgttg gcgaacttgc cggtctccca
      901 cacccagtcg ccgtggccgc cgatcaggtg cggacgggtg tcgcggttgg cctgggagtg
      961 gatgaacagc acggtctcgc cgaccttggc ggtcatcgcg ttctcgccgg tcagggcgcc
     1021 gaccttgccg ttgaatacca cgtgggtcgg cgtcagggtg cgcatcgcct cgcgagtgtc
     1081 cgggtagctg gccatcaggc tgggatagtc cttgtatttg ccgtccgggc ccttggggat
     1141 gtacaggtcg aactcgccga tggtgtaggc gcggtcgtag tgcagcgagt tgccgtccgg
     1201 gtccttcagg ccttcgcgcg gcagcaccat cagcgtgccg ctcataccgg cgagcacgtg
     1261 ccaggcgacc atgccctcgg gcgcgcagtg gtagacgaag gtgccgctgc ggtcggcctt
     1321 gaagcgcagc acggcctcct ggcccggcgc cacgaaggtc agcttggcgc cgcccagcgc
     1381 gccggtggcg gcgtggaagt cgatgttgtg cggcatgctg ttgctggccg ggttgaccag
     1441 ggtcagttcg acgtagtcgc cctcgtgcac gaccatggtc gggccgggca tggaaccgtc
     1501 gaaggtcatc gcctgcaggg tggtgccctg gttgtcgatc accaccttct tctcctggat
     1561 caccatgcgg aactgcacca cttgcggcgc tcgggtcacc gcctgttcgt gggcgtgcac
     1621 ctgcggcggt gcgaccaggt cgaccttgac ccgctgcaat ccgtcggcgc ccgccgccag
     1681 cgcctgccct acgacgacca gcgacaccac catggccagg ggttttaaga cgttcatcgc
     1741 gaagctcctt tttcgttggc ttggcccatt gcaggccaag cgggaacctc gtttgttgtc
     1801 ctggagcaat gaaagcggcg cttctgccgg gccgggtcct tttgtcgcag gcccgacctg
     1861 ttgaccggcg ggttgctgac cgaacggaca ggcgccgagc cgcgggatag aatcgctgcc
     1921 tgcttacccc tgcaaggact cccatggcca ccgccaaccc cagccgcggc tacccgctcg
     1981 gcatcgccgc ctatctcatc tggggcctgt tcccgctgta cttcaaggcc atccaggccg
     2041 tgccggcgct ggagatcatc gcccaccggg cgatctggtc cgcgctgttc ggcgccctgc
     2101 tgctggccct gtggaagcac cccggctggt ggcgcgaact gcgcgacaac cccaagcgcc
     2161 tggcggtgct gaccgccagc ggcctgctga tcgccagcaa ctggctggtc tatgtctggg
     2221 cggtgaacaa cggacgcatg ctcgaagcca gcctgggct
//
LOCUS       DATIHC010000661         2211 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_6611, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000661 DATIHC010000000
VERSION     DATIHC010000661.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2211)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2211)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2211
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6611"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..272
                     /locus_tag="VLF16_10995"
     CDS             <1..272
                     /locus_tag="VLF16_10995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017701499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HSX71446.1"
                     /translation="CVLIASEPRLLQAGLNAGLWCVGLATCGSLCGLALGDWQALSAT
                     EREKLRVQATLELYRLGAHSVIDHPGELPACLEDLAVRRSKGEKP"
     gene            392..655
                     /locus_tag="VLF16_11000"
     CDS             392..655
                     /locus_tag="VLF16_11000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4404 family protein"
                     /protein_id="HSX71447.1"
                     /translation="MSERLSQHLQQLREEIAGDVPLDAEDRAALLELMQEIDLKLARE
                     LASDPDASLVDGVNLAVERFESQHPTLTGTLRNILQSLANMGI"
     gene            complement(698..1525)
                     /gene="queF"
                     /locus_tag="VLF16_11005"
     CDS             complement(698..1525)
                     /gene="queF"
                     /locus_tag="VLF16_11005"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251496.1"
                     /note="Catalyzes the NADPH-dependent reduction of
                     7-cyano-7-deazaguanine (preQ0) to
                     7-aminomethyl-7-deazaguanine (preQ1) in queuosine
                     biosynthesis; Derived by automated computational analysis
                     using gene prediction method: Protein Homology.
                     GO_function: GO:0033739 - preQ1 synthase activity
                     [Evidence IEA];
                     GO_function: GO:0043867 - 7-cyano-7-deazaguanine
                     tRNA-ribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HSX71448.1"
                     /translation="MQHPAEQSPLGKSSEYVFQYAPELLFPIPRAAKWAELGLLAGQL
                     PYQGVDYWNCYELSWLTPSGKPVVAIGEFAIPADSPNIIESKSFKLYLNSLNQTPYAD
                     RAEVEALLARDLSACAGAPVAVRVRGLDEVAAEGVATLPGRCIDELEIEVSDYAHPRP
                     ELLRCADEVVEETLYSHLLKSNCPVTGQPDWGTLVVEYRGPRLDAASLLAYVVSFRQH
                     QDFHEQCVERVFLDLQRLLRPQKLTVYARYVRRGGLDINPYRSTEAIAPDNRRLVRQ"
     gene            complement(1559..2077)
                     /locus_tag="VLF16_11010"
     CDS             complement(1559..2077)
                     /locus_tag="VLF16_11010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010566468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin family protein"
                     /protein_id="HSX71449.1"
                     /translation="MRAPISCALLCLLSLPALAAGDHGGRGSHAHGEQAASPFGQPAA
                     AGQATRTVEVVLGDMYYRPDSLEVQAGETVRFVLENEGKLPHEFSLGDAASHAEHQQQ
                     MLAMQQMGHGMLHEDATTASVAPGERAELTWTFAEAGTLQFACNIPGHYQAGMVGELR
                     VKPKSRSSGAGV"
BASE COUNT          378 a          742 c          745 g          346 t
ORIGIN      
        1 gttgcgtgct gatcgccagc gagccgcgcc tgctgcaggc cgggctcaac gcaggactct
       61 ggtgcgtcgg gctggccacc tgcggctcgt tgtgcggcct ggccctgggc gactggcagg
      121 cgctttcggc gacggagcgc gagaagctgc gcgtgcaggc cacgctggag ctgtaccgcc
      181 tcggcgccca ctcggtgatc gatcacccgg gcgagctgcc ggcctgcctc gaggacctgg
      241 ccgttcgccg cagcaagggt gaaaaaccct gacagcaaaa cttgctgtgg atcaggcagg
      301 cgcgcccggc ctggattaac tttcagacac atcttcagcg aacccaggcc agcgagccgg
      361 gtccactctg ggtagtcaga aggagaagac catgtccgaa cgcctgagcc aacacctcca
      421 gcaactgcgt gaagaaatcg ccggcgacgt gccgctggat gccgaagacc gcgccgcgct
      481 gctcgagctg atgcaggaaa tcgacctcaa gctggcgcgg gaactggcca gcgatcccga
      541 cgccagcctg gtggacggcg tcaacctggc ggtggagcgc ttcgagagcc agcaccccac
      601 cctcaccggc accctgcgca acattctgca gagcctggcc aacatgggca tctagcccag
      661 cccgctcgaa aaaagcccgc gtcagcgggc tttttcgtta ctggcgcacc agccggcgat
      721 tgtccggcgc gatggcctcg gtgctgcgat aggggttgat gtccagcccg ccgcggcgca
      781 catagcgcgc atacaccgtc agcttctgcg ggcgcagcag acgctgcaag tcgaggaata
      841 cccgctccac gcactgctcg tggaagtcct ggtgctgacg gaagctcacc acgtaggcca
      901 gcaggctcgc ggcatccagg cgcgggccgc ggtactcgac taccaatgtg ccccagtccg
      961 gctggccggt gaccgggcag ttggatttga gcagatggct gtacagcgtt tcctcgacga
     1021 cctcgtccgc gcagcgcagc agctccgggc gcggatgcgc gtagtcgctg acctcgatct
     1081 cgagttcgtc gatgcagcgc ccgggcagcg tggccacgcc ctcggcggcc acctcatcca
     1141 ggccgcgcac gcgcaccgcc accggcgcac cggcgcaggc cgacaggtcg cgcgccagca
     1201 gcgcctcgac ctcggcgcgg tcggcatagg gcgtctggtt cagcgagttg aggtagagct
     1261 tgaacgactt ggactcgatg atgttcggcg aatcggccgg aatggcgaac tcgccaatcg
     1321 ccaccaccgg cttgccggac ggcgtcagcc aggacagctc gtagcagttc cagtagtcaa
     1381 cgccctggta tggcagctgg ccggccagca ggcccagctc ggcccatttg gcggcacgcg
     1441 ggatggggaa cagcagttcg ggggcgtact ggaagacgta ctcgctggac ttgcccagcg
     1501 gcgattgttc ggcgggatgc tgcatgacga cggcctggaa agcgaaaaac ggcgtgcatt
     1561 atacgcccgc cccgctcgat cgggacttcg gctttacccg cagctcgccg accatgcccg
     1621 cctggtaatg gccggggatg ttgcaggcaa actgcagcgt gccggcttcg gcgaaagtcc
     1681 aggtcagctc ggcccgttcg cccggcgcca ccgaggcggt ggtggcgtcc tcgtgcagca
     1741 tgccgtggcc catctgctgc atcgccagca tctgctgctg atgctcggcg tgggatgccg
     1801 cgtcgcccag gctgaactcg tgcggcagct tgccctcgtt ctccagcacg aagcgcaccg
     1861 tctcgccggc ctgcacctcg agggaatcgg ggcggtagta catgtcgccg agcacgacct
     1921 cgacggtgcg tgtcgcctgc cccgcagcgg caggttggcc gaatggcgac gcggcctgtt
     1981 cgccgtgagc gtgggagccg cggccgccgt gatcgcccgc ggccagcgcc ggcaggctga
     2041 gaaggcacag cagagcgcag gagatgggag cgcgcatggg tattccttcc gatccgtgaa
     2101 aaaaccgcag cctaaaacct tgccaccgtg gcaatgcaag ctgtttcagg ccgtgcgcgc
     2161 ttccagatgc tccgcgtgga tcggccgcca gcgccgcagc agggtataca g
//
LOCUS       DATIHC010000662         2081 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4146, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000662 DATIHC010000000
VERSION     DATIHC010000662.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2081
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4146"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..353
                     /locus_tag="VLF16_11015"
     CDS             <1..353
                     /locus_tag="VLF16_11015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004373080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HSX71450.1"
                     /translation="LPMSELQHHELYMREPGSGARASIEQAYAEHGLEARAAMVGGGT
                     EPLKRLIASGRGIAWLSQLVVEEELADGRLVQLDVRDLRIERDLHVLWRQGSQLNPAP
                     AAFLQLIEGNIKTF"
     gene            400..1407
                     /locus_tag="VLF16_11020"
     CDS             400..1407
                     /locus_tag="VLF16_11020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HSX71451.1"
                     /translation="MSLRVPQLRFEPADELAALCKAGGDPLRLNVLRALANDSFGVLE
                     LAQIFATGQSGMSHHLKVLAQAGLVATRREGNAIFYRRALPQGELLGGTLHGALLEEV
                     DGLRLPDEVQARIAAVHAQRAAASRDYFARTADKFQAQQDLIAGLPQYRDSVLALLDA
                     LGFAPAATALEVGPGDGGFLPELARRFAHVVALDNSEAMLELARQRCAKERLGNVELQ
                     LADALNDEIGAADCVVVNMVLHHFAAPAEALKQLARLVNTGGSLLITELCSHDQSWAR
                     TACGDLWLGFEQEELARWADAAGLTPGESLYIGLKNGFQIQVRHFAKPDAKQTRQTRY
                     E"
     gene            1417..>2081
                     /gene="metK"
                     /locus_tag="VLF16_11025"
     CDS             1417..>2081
                     /gene="metK"
                     /locus_tag="VLF16_11025"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004373084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HSX71452.1"
                     /translation="MSEYSLFTSESVSEGHPDKIADQISDAVLDAIITQDKHARVAVE
                     TLVKTGVAVVAGEVTTSAWVDLEELVRKVILDIGYDSSEVGFDGATCGIVNIIGKQSP
                     DIAQGVDRAKPEDQGAGDQGLMFGYASNETDVLMPAPIRFSHALVERQAEARKSGLLP
                     WLRPDAKSQVTCRYENGQVVGIDAVVLSTQHNPDVSLPDLREAVMELIVKHSLPAELL
                     HKDT"
BASE COUNT          370 a          730 c          670 g          311 t
ORIGIN      
        1 acctgcccat gagcgagctg cagcaccacg agctgtacat gcgcgagccc ggctccggcg
       61 cccgcgccag catcgagcag gcctacgctg aacacggcct ggaggcacgg gcggcgatgg
      121 tcggcggcgg caccgaaccg ctgaagcgcc tgatcgccag tggccgcggc atcgcctggc
      181 tgtcgcaact ggtggtggag gaagagctgg ccgacggtcg cctggtgcaa ctcgacgtgc
      241 gtgacctgcg catcgaacgc gacctgcacg tgctctggcg ccagggcagc cagctcaacc
      301 ccgcgcccgc cgcattcctg cagctaatcg aaggcaatat caaaactttt tgatattgct
      361 gttgctgtat gaaaaatgac cgactagact gcgcacccca tgagcctgcg cgtccctcag
      421 ctccgtttcg agcccgccga tgaactggcc gccctgtgca aggccggcgg cgacccgctg
      481 cgcctgaacg tgctgcgggc gctggccaac gactcgttcg gcgtgctgga gctggcgcag
      541 atcttcgcca ctggccagtc gggcatgagc catcacctca aggtactggc ccaggccggc
      601 ctggtggcca cccgccgcga gggcaacgcg atcttctatc gccgcgccct gccccagggc
      661 gagctgctcg gcggcaccct gcatggggcg ctgctggaag aggtcgacgg cctgcggctg
      721 ccggacgagg tccaggcgcg catcgccgcc gtgcatgccc agcgcgccgc cgcgagccgc
      781 gactacttcg cccgcacggc ggacaagttt caggcccagc aggacctgat cgccgggctg
      841 ccgcagtacc gcgacagcgt gctggccctg ctcgacgccc tgggcttcgc cccggcggcg
      901 acggccctgg aggtcggccc cggagacggc ggcttcctcc cggaactggc gcgccgcttc
      961 gcccacgtgg tggcgctgga caacagcgag gcgatgctgg aactggcgcg ccagcggtgc
     1021 gccaaagaac gactgggcaa tgtcgagctg cagctcgctg atgccctgaa cgacgagatc
     1081 ggcgccgccg actgcgtggt ggtgaacatg gtgctgcacc atttcgctgc cccggccgag
     1141 gcgctgaaac agctggcccg cctggtgaac accggcggca gcctgctgat caccgagttg
     1201 tgcagccatg accagagttg ggccaggacg gcctgcggcg atctctggct aggcttcgag
     1261 caggaagaat tggcccgttg ggccgatgcc gcggggctca cgcccggcga gagcctctac
     1321 attggcctca agaacggctt tcagattcag gtacggcact tcgccaagcc ggatgcgaag
     1381 caaacccgcc aaaccaggta tgaataggat tttgaaatga gcgaatactc cctgtttacc
     1441 tccgaatccg tgtccgaagg ccatccggac aagatcgccg accagatttc cgatgccgtc
     1501 ctcgacgcca tcatcaccca ggacaaacac gcccgcgtgg ccgtggaaac cctggtcaag
     1561 accggcgtcg ccgtcgtcgc cggcgaagtc accacctccg cctgggtcga cctggaagag
     1621 ctggtgcgca aggtcatcct cgacatcggc tacgacagct ccgaagtcgg cttcgacggc
     1681 gccacctgcg gcatcgtcaa catcatcggc aagcagtccc cggacatcgc ccagggtgtc
     1741 gaccgcgcca agccggaaga ccagggcgcc ggcgaccagg gcctgatgtt cggctacgcc
     1801 agcaacgaga ccgacgtgct gatgccggca ccgatccgct tctcccacgc cctggtcgag
     1861 cgccaggccg aggcccgcaa gtccggcctg cttccgtggc tgcgcccgga cgccaagagc
     1921 caggtcacct gccgctacga gaacggccag gtggtcggca tcgacgccgt ggtgctgtcc
     1981 acccagcaca acccggacgt ctcgctaccc gacctgcgcg aagcggtgat ggagctgatc
     2041 gtcaagcact ccctgccggc cgaactactg cacaaggaca c
//
LOCUS       DATIHC010000663         4812 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11135, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000663 DATIHC010000000
VERSION     DATIHC010000663.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4812
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11135"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..138
                     /locus_tag="VLF16_11030"
     CDS             <1..138
                     /locus_tag="VLF16_11030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate-binding protein"
                     /protein_id="HSX71453.1"
                     /translation="KPLSPLEAEFLKLVLSKQGQEVVVKDGYIPLPAKVVEKTKKELG
                     L"
     gene            313..2592
                     /locus_tag="VLF16_11035"
     CDS             313..2592
                     /locus_tag="VLF16_11035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014818691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease"
                     /protein_id="HSX71454.1"
                     /translation="MNDLANNRMSASNSHRIDFDTPALQRKRRMRALKDRMARWYVSI
                     GGLAVLACITLIFFYLAYVVAPMFGGADMESREAQQPSWLAGQGEALLLSVEEQNRVA
                     MRLSRSGRVQFFAVKDSAAMSDFQLPLPAGASIASVSEDQPGSRRVALGLSNGQVLVF
                     EHAYKVSYPNNVKTITPELIYPFGEAPITLDDQGRALEHVAVSQSGESLMLSASTGAE
                     LHVLNISREENLMTGEVTLGEERIALPQIAEPIKAMVIDPRQQWLFVINGKATADVFD
                     LRNKSLNGRYKLLTGEAEVTAVNPLLGGVSLMIGDSKGGIAQWFMVRDDDGKAALTRI
                     RGFQLEDAAITQILPEERRKGFIALDAAGNLGIFHSTAHRTLLIEKVAEGAGSAALSP
                     RANRVLVESGGQLQRFIIDNPHPEISWSALWGKVWYESYDEPQYVWQSTSANSDFEPK
                     MSLAPLTFGTLKAAFYAMLLAAPLAICAAIYTAYFMAPAMRRKVKPVIELMEALPTVI
                     LGFFAGLFLAPYVEGHLPGIFSLLLLTPVGVLLAAFAWSRLPERIRLVIPDGWEAALL
                     IPVIIVIGWSSLGMSGYLENWFFGGDMRLWISNDLGITFDQRNALVVGLAMGFAVIPN
                     IYSIAEDAVFSVPKSLTFGSLALGATPWQTLTRVVILTASPGIFSALMIGLGRAVGET
                     MIVLMATGNTPIMDMNIFQGLRTLAANVAVEMPESEVGSTHYRVLFLSALVLLSFTFV
                     MNTLAELIRTRLRKKYASL"
     gene            2615..4291
                     /gene="pstA"
                     /locus_tag="VLF16_11040"
     CDS             2615..4291
                     /gene="pstA"
                     /locus_tag="VLF16_11040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HSX71455.1"
                     /translation="MKTKEQNLKTWFKSGSPWVWMTASGVSIAVIMTIGLLAVIAMRG
                     LGHFWPADVIEAQYQVPGEAARVMAGELVQEEQVPRARLAAAGLPVDVKGGEFMTREL
                     FKVGNREVYGSDFSWTVAEWMSEPRTPEDLVVMERREWGNFYGYLVNVKENGQVVAEG
                     EAAWDELQKRISRVDDLHAQVVELEKGDIGRINHGLEQLRLESRKLELKGQLDAAAQA
                     DLEARRAELDAEYKGLESRLIDLNQQLARDSVAVKTADGRQQDIVLSKVVRAYQPNAM
                     GTGAKLGFYAAKLWEFVSDEPREANTEGGIFPAIFGTIMMTLIMAVIVTPFGVLAAIY
                     LREYAKQGPMTRIIRIAVNNLAGVPAIVYGVFGLGFFVYVLGGSIDRLFFPESAPAPT
                     FGTPGLLWASLTLAILAVPVVIVATEEGLARIPRALREGSLALGATKAETLWKVVLPM
                     ASPAMMTGMILAVARAAGEVAPLMLVGVVKLAPSLPVDGNYPYLHLDQKIMHLGFHIY
                     DVGFQSPNVEAARPLVYATAFLLVLVIALLNLSAVFIRNHLREKYKALDH"
     gene            4357..>4812
                     /locus_tag="VLF16_11045"
     CDS             4357..>4812
                     /locus_tag="VLF16_11045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSX71456.1"
                     /translation="MQHEVHTHGIDMAALGRQKQGLNLADETVALEVPGLNLFYGEKQ
                     ALFDVAMNIPKQRVTAFIGPSGCGKSTLLRTFNRMNDLVDGCRVQGEIRLDGHDIYKK
                     GVDVAELRRRVGMVFQKPNPFPKSIYENVVYGLRIQGVNQKRVLDETVEW"
BASE COUNT          830 a         1656 c         1538 g          788 t
ORIGIN      
        1 aagccgctgt ccccgctgga agccgaattc ctgaagctcg tgctgtcgaa gcagggccag
       61 gaagtggtag tgaaggatgg ttacatcccg ctgccggcca aagtggtcga gaagaccaag
      121 aaggaactgg gcctctaacc agccccaggg tgcgccggaa ccccatctcc ggcgctccat
      181 ccgacgcgcc cgctactctt cagagtcgcg ggcgttgtcg cgtcaccgct ctgtaatctt
      241 tctgtcacac aagccggata gattgacgta cctcacattg agcgggcttg tccgccgcgc
      301 cgagatatcc tcatgaacga cctggccaat aaccgcatga gtgcttccaa cagccaccgg
      361 atcgatttcg atacccccgc cctgcagcgc aagcggcgca tgcgcgccct caaggaccgc
      421 atggcgcgct ggtacgtgtc catcggcggc ctggccgtgc tggcctgtat caccctgatc
      481 ttcttctacc tcgcctatgt cgtcgcgccc atgttcggcg gcgccgacat ggagtcccgc
      541 gaagcccagc agccgagctg gctggccggc cagggcgagg ctctgctgct ctccgtcgaa
      601 gagcagaacc gcgtcgccat gcgcctgtcg cgcagcggcc gggtgcagtt cttcgccgtg
      661 aaggacagcg ccgccatgag cgacttccag ctgccgctgc cggcgggcgc gagcatcgcc
      721 tcggtgtccg aggaccagcc cggcagccgc cgcgtggcgc tcggcctgtc caacggccag
      781 gtgctggtgt tcgagcacgc ctacaaggtg agctacccga acaacgtaaa gaccatcacc
      841 cccgagctga tctacccgtt cggcgaggcg cccatcaccc tcgacgacca gggccgtgcc
      901 ctcgagcacg tagccgtcag ccagagcggc gagagcctga tgctcagcgc ctccaccggt
      961 gccgagctgc acgtgctgaa catcagccgt gaagagaacc tgatgaccgg cgaggtcacc
     1021 ctgggcgagg agcgcatcgc cctgccgcag atcgccgagc cgatcaaggc gatggtcatc
     1081 gacccgcgcc agcagtggct gttcgtgatc aacggcaagg ccaccgccga cgtcttcgac
     1141 ctgcgcaaca agagcctcaa cggtcgctac aagctgctca ccggcgaggc cgaggtcacc
     1201 gcggtcaacc cgctgctcgg cggcgtctcg ctgatgatcg gcgacagcaa gggcggcatc
     1261 gcccagtggt tcatggtgcg tgacgacgac ggcaaggccg cgctgacccg catccgcggc
     1321 ttccagctgg aagatgccgc catcacccag atcctgcccg aggagcgccg caagggcttc
     1381 atcgcgctgg acgccgccgg caacctaggc atcttccaca gcaccgcgca ccgcaccctg
     1441 ctgatcgaga aggtcgccga aggtgccggc agcgccgccc tgtcgccgcg cgccaaccgc
     1501 gtgctggtgg agtccggcgg ccagctgcag cgcttcatca tcgacaaccc gcacccggaa
     1561 atctcctgga gcgcgctgtg gggcaaggtc tggtacgaga gctacgacga gcctcagtac
     1621 gtctggcagt ccacctccgc caacagcgac ttcgaaccga agatgagcct ggcgccgctg
     1681 accttcggca ccctcaaggc cgccttctac gccatgctgc tggccgcccc gctggccatc
     1741 tgcgcagcca tctacaccgc ctacttcatg gccccggcca tgcgccgtaa ggtcaagccg
     1801 gtgatcgagc tgatggaggc gctgccgacg gtgattctcg gcttcttcgc cggcctgttc
     1861 ctggcgccgt atgtcgaagg ccacctgccg ggcatcttca gcctgctgct gctgacaccg
     1921 gtcggcgtgc tgctcgccgc cttcgcctgg agccgcctgc cggagcgcat ccgcctggtg
     1981 atcccggacg gctgggaagc ggcgctgctg atcccggtga tcatcgtcat cggttggagc
     2041 tcgctgggca tgagcggcta cctggagaac tggttcttcg gcggcgacat gcgtctgtgg
     2101 atcagcaatg acctgggcat caccttcgac cagcgcaacg ccctggtggt cggtctggcc
     2161 atgggcttcg cggtgatccc gaacatctac tcgatcgccg aagacgccgt gttcagcgtg
     2221 cccaagagcc tgaccttcgg ctccctggcc ctcggtgcca cgccctggca gacgctgacc
     2281 cgcgtggtga tcctcactgc cagcccaggc atcttctcgg cgctgatgat cggcctgggc
     2341 cgcgccgtcg gcgaaaccat gatcgtgctg atggccaccg gcaacacgcc gatcatggac
     2401 atgaacatct tccagggcct gcgcaccctg gccgccaacg tggcggtgga gatgccggaa
     2461 tccgaggtgg gcagtaccca ctaccgcgtg ttgttcctct ccgcgctggt gctgctgagc
     2521 ttcaccttcg tgatgaatac cctggcggag ctgatccgta cccgcctgcg caagaagtac
     2581 gcgtcgctct gagaactggg aaaggtagac gtccgtgaaa accaaagagc aaaacctcaa
     2641 gacctggttc aagagcggtt cgccctgggt gtggatgacc gcgagcggtg tgtccatcgc
     2701 cgtgatcatg accatcggcc tgctcgccgt gatcgccatg cgcggcctcg gccacttctg
     2761 gccggccgat gtgatcgagg cccagtacca ggtgccgggc gaagccgccc gcgtgatggc
     2821 cggcgaactg gtccaggaag aacaggtgcc gcgcgcgcgc ctggccgccg ccggcttgcc
     2881 ggtggatgtg aagggcggcg agttcatgac ccgcgagctg ttcaaggtcg gtaaccgtga
     2941 ggtctacggt tccgacttca gctggaccgt ggccgagtgg atgagcgagc cgcgcacccc
     3001 ggaagacctg gtggtcatgg aacgccgcga gtggggcaac ttctatggct acctggtcaa
     3061 cgtcaaggag aacggccagg tggtcgccga aggcgaggcc gcctgggacg agctgcagaa
     3121 gcgcatctcc cgtgtcgacg atctgcacgc ccaggtggtg gagctggaga agggcgacat
     3181 cggccgcatc aaccacggcc tcgagcagct gcgtctggaa agccgcaagc tggaactgaa
     3241 gggccagctg gacgccgccg cccaggccga cctggaggcg cgccgcgccg aactggacgc
     3301 cgagtacaag ggcctcgagt cgcgcctgat cgacctcaac cagcagctgg cccgcgacag
     3361 cgtggcggtg aagaccgccg acggccgcca gcaggacatc gtcctcagca aggtggtgcg
     3421 cgcctaccag cccaacgcca tgggcaccgg cgccaagctc ggcttctacg ccgccaagct
     3481 gtgggagttc gtcagcgacg agccgcgcga ggccaacacc gagggcggta tcttcccggc
     3541 catcttcggc accatcatga tgaccctgat catggccgtg atcgtcaccc cgttcggcgt
     3601 gctggcggcc atctacctgc gcgaatacgc caagcagggg ccgatgaccc gcatcatccg
     3661 catcgccgtg aacaacctgg ccggcgtgcc ggccatcgtc tacggcgtgt tcggcctggg
     3721 cttcttcgtc tacgtgctgg gcggctcgat cgaccgcctg ttcttccccg agtccgcccc
     3781 ggcgccgacc ttcggcaccc cgggcctgct gtgggcctcg ctgaccctgg cgatcctcgc
     3841 cgtgccggtg gtgatcgtcg ctaccgagga aggcctggcg cgcatcccgc gggccctgcg
     3901 cgaaggctcc ctggcgctcg gcgcgaccaa ggccgagacc ctgtggaagg tggtcctgcc
     3961 gatggccagc ccggccatga tgaccggcat gatcctcgcc gtggcccgcg ccgccggcga
     4021 agtggcgccg ctgatgctgg tcggcgtggt caagctggcg ccgagcctgc cggtggatgg
     4081 caactacccg tacctgcacc tggaccagaa gatcatgcac ctgggcttcc atatctacga
     4141 cgtcggcttc cagagcccca acgtcgaggc cgcccgcccg ctggtatacg ccaccgcgtt
     4201 cctgctggtg ctggtgattg cgctgctcaa cctgagcgcg gtattcatcc gtaaccacct
     4261 gcgcgagaag tacaaggcgc tggatcattg atgacttgcg tcgccgcggc accggccgcg
     4321 gcggcatgaa cgaattgtta gcgtagggag cctcccatgc agcacgaagt acacacccac
     4381 ggtatcgaca tggccgccct cggccgacag aagcagggcc tcaacctggc ggacgagacc
     4441 gtcgccctgg aagtgcccgg cctgaacctg ttctacggcg agaagcaggc gctgttcgac
     4501 gtcgccatga acattcccaa gcagcgcgtg accgccttca tcggcccgtc cggctgcggc
     4561 aagtcgaccc tgctgcgcac cttcaaccgg atgaacgatc tggtcgacgg ctgccgcgtc
     4621 cagggcgaga tccgcctcga cggccacgac atctacaaga agggtgtgga cgtggccgag
     4681 ctgcgtcgcc gcgtcggcat ggtgttccag aagcccaacc cgttccccaa gagcatctac
     4741 gagaacgtgg tgtacggcct gcgcatccag ggcgtgaacc agaagcgcgt gctcgacgag
     4801 accgtggagt gg
//
LOCUS       DATIHC010000664         2570 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17257, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000664 DATIHC010000000
VERSION     DATIHC010000664.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2570
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17257"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..381)
                     /locus_tag="VLF16_11050"
     CDS             complement(<1..381)
                     /locus_tag="VLF16_11050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S4 domain-containing protein"
                     /protein_id="HSX71457.1"
                     /translation="MSEKDDGKVRLDKWLWAARFYKTRALAKEAIEGGKVHCRGERCK
                     PGKEPKVGEEFVIRAGFEERTVVVRALSTVRRGAPEAQLLYEETPDSIARREEAAAQR
                     KAGALGVQTDGRPNKKQRRQLLGLR"
     gene            481..948
                     /locus_tag="VLF16_11055"
     CDS             481..948
                     /locus_tag="VLF16_11055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc protease"
                     /protein_id="HSX71458.1"
                     /translation="MKTFDQLSVIGLREWINLPELGMIGLRAKIDTGASTSTLHASDI
                     VPFERDGERWVRFTAHFGTLVQRRHPCEAKVVTVKTIKSSNGQAQTRYVISTLLTLGD
                     RSWPVDFTLACRKTMRYRVLLGAHALVDGQLVVNPALTYVQDKPQLPILSGAQ"
     gene            945..1850
                     /gene="rimK"
                     /locus_tag="VLF16_11060"
     CDS             945..1850
                     /gene="rimK"
                     /locus_tag="VLF16_11060"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6--L-glutamate ligase"
                     /protein_id="HSX71459.1"
                     /translation="MKIAILSRNPRLYSTRRLIQAGEERGHEVVVIDTLRAYMNIASH
                     KPQIHYRGKPLEGFDAVIPRIGASVTFYGCAVLRQFEMQGVFPLNESVAISRSRDKLR
                     SLQLLSRKGIGLPVTGFAHSPDDIPDLIQMVNGAPLVIKVLEGTQGIGVVLCETEKAA
                     ESVIEAFMGLKQNIMVQEYIKEAGGADIRCFVVGDKVIAAMKRQAKPGEFRSNLHRGG
                     EASLIKITPEERMTAIRAAKVMGLSVAGVDILRSNHGPLVMEVNSSPGLEGIETTTGK
                     DVAGIIVQYLEKNAIPGQTRTKGRG"
     gene            complement(1863..>2570)
                     /locus_tag="VLF16_11065"
     CDS             complement(1863..>2570)
                     /locus_tag="VLF16_11065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013713570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSX71460.1"
                     /translation="EVYRAFNQMAEDIEQGARERELMLAGVSHDLRTPLTRLRLSLEM
                     LGGDAEMTEDMIRDIEHMDTILDQFLAFIRDGRDERSELCDLGELVREVVAPYNQHSE
                     QVRLYLEQLPAFPLRRVSIKRLLVNLLENALRYGGQSVEVVTNLAGDESAPYVVLSVL
                     DRGPGIAASEMGEIFNPFIRGDRARGGKGTGLGLAIVKRIAALHGGSVELRNRSGGGL
                     EARICLPLGLLLPRDAN"
BASE COUNT          425 a          900 c          831 g          414 t
ORIGIN      
        1 gcgcaggccg agcagctgcc ggcgctgctt cttgttcggc cggccgtcgg tctgcacgcc
       61 cagggcgccg gccttgcgct gcgcggcggc ttcctcacgc cgggcgatgc tgtcgggcgt
      121 ctcttcatac agcagctgcg cctccggcgc gccgcggcgc acggtagaga gcgcccgcac
      181 caccacggtc ctctcctcga agcccgcgcg gatcacgaac tcttcgccca ctttcggctc
      241 cttgccgggt ttgcagcgct cgccgcggca atgcaccttg ccgccctcga tggcctcctt
      301 ggccagcgcc cgggtcttgt agaaacgcgc ggcccatagc cacttgtcca gtcgtacctt
      361 gccgtcgtct ttctcgctca tcgccgttcc aggaaatagg tgaatcaccc tgtgaatctt
      421 gcctgatgca gttgtcacat ggcgcatcta gaatgcctcc atcgcctgtg gaagcccgta
      481 ttgaagactt tcgaccaact ctccgtgatc ggcctgcgcg aatggatcaa cctgccggag
      541 ctcggcatga tcggcctgcg cgcgaagatc gacaccggcg ccagcacctc gaccctgcac
      601 gccagcgaca tcgtcccgtt cgagcgcgac ggtgaacgct gggtgcgctt caccgcccac
      661 ttcggcaccc tggtgcagcg ccgccaccca tgcgaggcca aggtggtgac ggtgaagacc
      721 atcaagagct ccaacggcca ggcccagacc cgctacgtga tcagcaccct gctcaccctg
      781 ggtgatcgca gctggccggt ggacttcacc ctggcctgcc gcaagaccat gcgctatcgc
      841 gtactgctcg gcgcccacgc cctggtcgac ggccagctgg tggtcaaccc ggcgctgacc
      901 tacgtgcaag acaaaccgca gctccccatt ctttccggtg cccaatgaag atcgccatcc
      961 tgtcgcgcaa tccgcgcctg tactcgacgc gtcgcctgat ccaagccggc gaggagcgtg
     1021 gccacgaggt ggtggtgata gacaccctgc gcgcctacat gaacatcgcc agccacaagc
     1081 cgcagatcca ctaccgcggc aagccgctgg aaggcttcga cgcggtgatc ccgcgcatcg
     1141 gtgcctcggt gaccttctat ggctgcgccg tgctgcgcca gttcgagatg cagggcgtgt
     1201 tcccgctcaa cgagtcggtg gccatcagcc gctcgcggga caagctgcgc tcgctgcagc
     1261 tgctgtcgcg caagggcatc ggcctgccgg tgaccggctt cgcccactcg ccggacgaca
     1321 tccccgacct gatccagatg gtcaacggcg cgccgctggt gatcaaggtg ctggagggca
     1381 cccagggcat cggcgtggtg ctctgcgaga cggagaaggc cgccgagtcg gtgatcgagg
     1441 cgttcatggg cctgaagcag aacatcatgg tgcaggagta catcaaggaa gccggcggcg
     1501 ccgacatccg ctgcttcgtg gtcggcgaca aggtgatcgc ggcgatgaag cgccaggcca
     1561 agcccggcga gttccgctcc aacctgcacc gcggcggcga ggccagcctg atcaagatca
     1621 ccccggaaga acgcatgacc gccatccgcg cggccaaggt catgggcctg tcggtggccg
     1681 gggtcgacat attgcgctcc aaccacggcc cgctggtgat ggaggtgaac tcctcgccag
     1741 gcctggaggg catcgagaca accaccggca aggacgtggc cggcatcatc gtgcagtacc
     1801 tggagaagaa cgccatcccc ggccagaccc gcaccaaggg caggggctga ggcgccgccc
     1861 gctcagttgg cgtcgcgcgg cagcaacagc cccagcggca ggcagatgcg cgcctccagg
     1921 ccgccgcccg agcggttgcg cagctcgacg ctgccgccgt gcagtgcggc gatgcgcttg
     1981 acgatggcca gaccgaggcc ggtgcccttg ccgccacggg cgcgatcgcc acggatgaac
     2041 gggttgaaga tctcgcccat ctccgaggcg gcgatgccgg gaccgcggtc aagcacgctg
     2101 agcaccacgt aaggcgcgct ctcgtcgccg gccagattgg tcaccacctc cacgctctgg
     2161 ccgccgtagc gcagggcgtt ttccagcagg ttcaccagca ggcgcttgat cgagacccgg
     2221 cgcagtggga aggctggcag ctgctccagg tacaggcgca cctgctcgct gtgctggttg
     2281 tagggcgcga ccacctcgcg caccagctcg cccaggtcgc agagctccga gcgctcgtcg
     2341 cggccgtcgc ggatgaaggc gagaaactgg tcgaggatgg tgtccatgtg ctcgatgtcg
     2401 cggatcatgt cctcggtcat ctcggcgtcg ccgccgagca tctccagcga caggcgcagg
     2461 cgcgtcagcg gcgtgcgcag gtcatgggag acgccggcga gcatcagctc gcgctcgcgg
     2521 gcgccctgct cgatgtcctc ggccatctgg ttgaaggcgc ggtacacctc
//
LOCUS       DATIHC010000665         2103 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_1009, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000665 DATIHC010000000
VERSION     DATIHC010000665.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2103)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2103)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2103
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1009"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..655
                     /gene="selD"
                     /locus_tag="VLF16_11070"
     CDS             <1..655
                     /gene="selD"
                     /locus_tag="VLF16_11070"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004756 - selenide, water dikinase
                     activity [Evidence IEA];
                     GO_process: GO:0016260 - selenocysteine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HSX71461.1"
                     /translation="CDAACIPLAGGHSIDAPEPIFGLAVTGVVEKRHMKRNDTASAGC
                     KLYLTKPLGIGILTTAEKKAKLREQDVGLARDWMCTLNKPGARFGKLTGVQAMTDVTG
                     FGLLGHLVEMADGAGLTAQVVYASVPRLPGVDYYLAEGCVPGGTLRNFDSYGEKIAPI
                     SEEQQHLLCDPQTSGGLLVAVAPEGEAEFLAVAAELGLDLAPIGRLVSRQSHAVEVL"
     gene            655..1758
                     /gene="mnmH"
                     /locus_tag="VLF16_11075"
     CDS             655..1758
                     /gene="mnmH"
                     /locus_tag="VLF16_11075"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004887581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043828 - tRNA 2-selenouridine synthase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HSX71462.1"
                     /translation="MRDNTADYRELFLNDVPMMDMRAPVEFTKGAFPHTVSLPLMTDI
                     ERQKVGTCYKQHGQQAAIELGHQLVAGKVKAERVEAWAAFAKANPNGYLYCFRGGLRS
                     QIVQQWLKDAGIDYPRVIGGYKAMRTFLIETLDSAVAECDFVIVGGMTGTGKTEVVAA
                     LDNSVDLEGHANHRGSSFGKRATGQPAQIDFENRLAIDLLKRRARGQQQFVLEDESRL
                     IGTCSLPLSLHQGMQQYPLVWLEDSVEGRVERILKDYVIDLAAEFLAVHGEEQGFALF
                     AARLLQSMDNIQKRLGGERHARLRGILQQALEEQGSSGAVDLHRGWIEGLLSEYYDPM
                     YAYQRESKASRIEFAGEQDAVLAYLRERAQRRS"
     gene            1758..>2103
                     /locus_tag="VLF16_11080"
     CDS             1758..>2103
                     /locus_tag="VLF16_11080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71463.1"
                     /translation="MSLKDHPDALDCTLYRPDENDPDAEEAELGDGHVLFEGAFEAPA
                     EWDAVEREDYFDGSDPALFFNARIESPAKADSNDFFIAEPGDYVAVMRGMTVEMYYVY
                     DRADASYVLIRDD"
BASE COUNT          380 a          704 c          710 g          309 t
ORIGIN      
        1 gtgtgacgcc gcatgcattc cgctggccgg cggccactcg atcgatgcgc cggagccgat
       61 cttcggcctg gccgtgaccg gcgtggtcga gaagaggcac atgaagcgca acgacaccgc
      121 cagcgccggc tgcaagcttt acctgaccaa gccgctgggc atcggcatcc tgaccacagc
      181 agagaagaag gccaagctgc gcgagcagga tgtgggcctg gcgcgtgact ggatgtgcac
      241 cctgaacaag cccggtgcgc gcttcggcaa actgaccggt gtgcaggcga tgaccgatgt
      301 caccggcttc ggcctgctcg gtcatctggt ggagatggcc gatggcgccg gcctgaccgc
      361 ccaggtggtg tatgccagcg tgccgcgcct gccaggcgtc gactactacc tggccgaggg
      421 ctgcgtgccc ggcggcactc tgcgcaactt cgacagctac ggcgagaaga tcgcgccgat
      481 ctccgaggaa cagcagcacc tgctgtgcga cccgcagacc agtggcggcc tactggtggc
      541 cgtggcgccg gagggcgagg ccgagttcct cgccgtggct gccgagctgg gtcttgatct
      601 ggcgcccatc ggccgactgg tctcgcgaca gagccacgcg gtagaggtgc tgtgatgcgc
      661 gacaacaccg ccgactaccg cgaactcttc ctcaacgatg tgccgatgat ggacatgcgc
      721 gccccggtcg aattcaccaa gggcgccttc ccgcacaccg tcagcctgcc gctgatgacc
      781 gatatcgagc ggcagaaggt cggcacctgc tacaagcagc acggccagca ggcggccatc
      841 gagctgggcc accagctggt cgccggcaag gtcaaggccg agcgcgtcga ggcctgggcg
      901 gccttcgcca aggccaaccc gaatggctac ctgtactgct tccgcggcgg cctgcgctcg
      961 cagatcgtcc agcagtggct gaaggacgcc ggcatcgatt acccgcgggt gatcggcggc
     1021 tacaaggcca tgcgtacctt cctgatcgag accctggaca gcgccgtggc cgagtgcgac
     1081 ttcgtcatcg tcggcggcat gaccggcacc ggcaagaccg aggtggtcgc ggccctggac
     1141 aacagcgtcg acctcgaagg ccacgccaat caccgtggct ccagcttcgg caagcgcgcc
     1201 accgggcaac cggcgcagat cgacttcgag aaccgcctgg ccatcgacct gctcaagcgc
     1261 cgcgcccgcg gccagcagca gttcgtgctg gaggacgaga gtcgtctgat cggcacctgc
     1321 tcgctgccgc tgtccttgca ccagggcatg cagcagtacc cgctggtgtg gctggaggac
     1381 agcgtcgagg gccgcgtcga gcgcatcctc aaggactacg tgatcgacct ggccgccgaa
     1441 ttcctcgccg tgcatggcga ggagcagggc ttcgcgctgt tcgccgcgcg cctgctgcag
     1501 agcatggaca atatccagaa acgcctgggc ggcgagcgcc acgcgcggct gcgcggcatc
     1561 ctccagcagg cgctggaaga gcagggcagc agcggcgcgg tggacctgca ccgcggctgg
     1621 atcgagggcc tgctgagcga atactacgat cccatgtacg cctaccagcg cgagagcaag
     1681 gcctcgcgca tcgaattcgc cggcgagcag gatgcggtgc tggcctacct gcgcgaacgc
     1741 gcgcaacgga gaagctgatg agcctgaaag accaccccga cgcgctggac tgcaccctct
     1801 accgtccgga cgagaacgat ccggatgccg aggaagcaga gctcggcgac ggccatgtgt
     1861 tgttcgaggg cgccttcgag gcaccggccg aatgggacgc cgtcgaacgc gaggactact
     1921 tcgacggcag cgacccggcg ctgttcttca acgcccgcat cgagagcccg gccaaggccg
     1981 acagcaacga cttcttcatc gccgagcccg gcgactacgt ggcggtgatg cgcgggatga
     2041 cggtggagat gtattacgtc tacgaccgcg ccgacgccag ctatgtgctg atccgcgacg
     2101 acc
//
LOCUS       DATIHC010000666         2308 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29863, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000666 DATIHC010000000
VERSION     DATIHC010000666.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2308)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2308
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29863"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1646)
                     /locus_tag="VLF16_11085"
     CDS             complement(<1..1646)
                     /locus_tag="VLF16_11085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012700051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSX71464.1"
                     /translation="MTLLKFSDVSLAYGAMPLLDGVSWQIARGERVCIIGRNGTGKSS
                     MLRLVKGDQMADDGEIWRAPALKIGELPQELPRADERTVYDVVAEGLADVGALLAQYH
                     HLSQHISGDDDLAMLTRVQQELEAKDGWRLQQLVESTLSRLQLPADKTLAELSGGWRR
                     RVLLAQALVAEPDLLLLDEPTNHLDIGAIAWLEEALLGFGGAVLFITHDRSFLQNMAT
                     RILELDRGHLIDWNGDYASFLVHKEQQLAAEETANALFDKRLAQEEVWIRQGIKARRT
                     RNEGRVRALKAMRQERGERRERQGKANIQLDAAEKSGKQVIVAENVSFAHPGGAALIR
                     DFSSVLQRGDRIGLLGANGTGKTTLLKLLLGDLQPTSGTIVAGSKLEVAYFDQLRHQL
                     EPEKTVIDNLAEGREFISIDGQNRHVLSYLGDFLFSPQRARTPVKALSGGERARLLLA
                     KLFSKPANLLVLDEPTNDLDVETLELLEEVLLNFPGTVLMVSHDRAFLDNVVTSTLVF
                     EGEGRVREYVGGYQDWLRQGGSPRLLGVGESKPARGDTSVA"
     gene            1806..>2308
                     /locus_tag="VLF16_11090"
     CDS             1806..>2308
                     /locus_tag="VLF16_11090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003456276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
                     /protein_id="HSX71465.1"
                     /translation="MPRRLYQLLSLLLVSTLSLSAQAASLTQQRQMYDEAKRALAKGD
                     KGPYLRYANALADYPLEPYLAYDELTARLKWASNDEIEAFLTEHGDLPQAGWMKLRWL
                     RWLAERGEWQTFANHYDPKLNFTELDCLYGQYLYKQGMKAEARAATEKLWLVGKSQPD
                     ACDALFST"
BASE COUNT          368 a          813 c          724 g          403 t
ORIGIN      
        1 gccacggatg tatcgccccg ggccggcttg ctctcgccga cgcccagcag ccgtggcgaa
       61 ccgccctggc gcaaccagtc ctggtagccg ccgacgtatt cgcgcacccg tccctcgcct
      121 tcgaagacca gggtgctggt caccacgttg tcgaggaacg cccggtcgtg gctgaccatc
      181 agcacggtgc cggggaaatt cagcaggact tcctcgagca gctcgagggt ttccacatcg
      241 aggtcgttgg tcggttcgtc cagcaccagc aggttggccg gcttgctgaa cagcttggcc
      301 agcagcaggc gtgccctctc ccctccggac agcgccttga ccggcgtgcg tgcccgttgc
      361 ggactgaaca ggaaatcccc gagataactc agcacgtggc ggttctgccc gtcgatgctg
      421 atgaattcgc gaccttctgc gaggttgtcg atgacggtct tctccggctc cagctgatgg
      481 cgcagctggt cgaagtaagc cacctcgagt ttactacctg ccactatcgt gccactagtg
      541 ggctgcaggt cgccgagcag cagcttgagc agcgtggtct tgccggtgcc gttggcgccg
      601 agcaggccga tgcggtcgcc acgctgcagc accgaggaga aatcgcggat cagcgcggct
      661 ccccctgggt gcgcaaaact gacattttcc gccactatca cctgcttgcc ggacttctcc
      721 gccgcgtcca gctggatgtt cgccttgccc tggcgctcgc gccgctcgcc gcgctcctgg
      781 cgcatggcct tgagcgcgcg aacgcgtccc tcattgcggg tacgtcgcgc cttgatgccc
      841 tggcgaatcc acacctcctc ctgggccagg cgcttgtcga acagcgcgtt ggcggtctct
      901 tccgccgcca gttgctgctc cttgtgcacc aggaagctgg cgtagtcgcc gttccagtcg
      961 atcaggtggc cgcggtccag ctcgaggatg cgcgtcgcca tgttctgcag gaaggaacgg
     1021 tcgtgggtga tgaacagcac ggcgccgccg aagcccagca gcgcctcttc cagccaggcg
     1081 atggcaccga tgtccaggtg gttggtcggc tcgtccagca gcagcagatc gggctcggcc
     1141 accagcgcct gggccagcag cacgcgacgg cgccagccgc cggagagttc ggcgagggtc
     1201 ttgtcggccg gcagctgcag gcgactcaga gtgctctcca ccaattgctg cagacgccag
     1261 ccatccttcg cttccagctc ctgctgcacg cgggtcagca tggccaggtc gtcgtcgcca
     1321 ctgatgtgct ggctgagatg gtgatactgg gcgagcaacg cgccgacgtc ggccaggccc
     1381 tcggcaacca cgtcgtacac cgtgcgctca tcggcgcgcg gcagctcctg cggcaactcg
     1441 ccgatcttca gcgccggggc gcgccagatc tcgccgtcgt cggccatctg gtcgcccttg
     1501 accaggcgca acatgctcga cttgccggtg ccgttgcggc cgatgatgca cacccgctcg
     1561 ccccgcgcga tctgccagga caccccgtcg agcaggggca tggcaccgta ggccagggaa
     1621 acgtcggaaa acttgagcag ggtcattggc taccaccttc gtgaacaggc gcgcattcta
     1681 accgagttgg ccggacgggc cgcggccggt ttgtcgcggc ggccttgcca ttctcccggc
     1741 aggtgcgaca ggctaagcta gcgttctcgt tgccccgctc cgttcctgct gcccccggat
     1801 gtaccatgcc ccgtcgcctg tatcagctgc tgtccctcct gctcgttagc accctttccc
     1861 tgtccgccca ggccgccagc ctgacccagc agcggcagat gtacgacgaa gccaagcgcg
     1921 ccctggccaa gggcgacaag ggcccgtacc tgcgctacgc caacgccctc gccgactacc
     1981 cgctcgagcc gtacctggcc tatgacgagc tgaccgcgcg actgaaatgg gcgagcaacg
     2041 acgagatcga ggccttcctc accgagcacg gcgaccttcc ccaggccggc tggatgaaac
     2101 tgcgctggct gcgctggctg gccgagcgcg gcgagtggca gaccttcgcc aaccactacg
     2161 acccgaaact caacttcacc gagctggatt gcctctacgg ccagtacctg tacaagcagg
     2221 gcatgaaggc cgaggcgcgc gccgcgaccg agaagctgtg gctggtcggc aagtcccagc
     2281 ccgacgcctg cgacgccctg ttcagcac
//
LOCUS       DATIHC010000667         1834 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13419, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000667 DATIHC010000000
VERSION     DATIHC010000667.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1834
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13419"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..998
                     /locus_tag="VLF16_11095"
     CDS             <1..998
                     /locus_tag="VLF16_11095"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HSX71466.1"
                     /translation="QLLALREKYAQPRPWRSTWQVLVTLVPHFALNGLIYWSWGGPLW
                     ITLALLVVNSLFLNRLVVVFHDLLHGSMYRSRGLGNLLGRLISPLIFMPAAHWQYEHN
                     FHHASANDLSRRGYGDMPLLTVREYQALGPWARFRYRVLRHPLFLFGPHALYKLMIFP
                     RTVANPAWPRRVKRSVHLTNLTLVVIGLTLWALGLERLIWIQLLSYAISTPTTVLLFY
                     INHHFEEAHWSPAEQWDFFGAALKGTSVLVYPPVMRWFACGIGLHCMHHLVPRIPNYN
                     LEACWKENALFADAAVIPLFWKGLATTRLRLWDEQAGRYVGSEGYRLAQRHTATT"
     gene            complement(1024..1734)
                     /locus_tag="VLF16_11100"
     CDS             complement(1024..1734)
                     /locus_tag="VLF16_11100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017675476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71467.1"
                     /translation="MRALPIICLLITASPLPAAELDGRYQATLDQRPVELVLRSQGER
                     VEGEYREGQRRFTLSGRLDGQTLLAQISEPASGQVLANLSANYANDMLAASLAARDPH
                     SGETLLRETLFQRVAPPPAPVDPNQDPALVGTWVYEQMTNSEGLEFASLTTVTTLRIR
                     ADGSIEQWRRSVAGGSEWSYDRPGELQYRGHWRSDHGLLLVQLQGAADFQPAARYRFD
                     TPYLVTESNTGRMIWQRR"
BASE COUNT          258 a          614 c          627 g          335 t
ORIGIN      
        1 ggcaactgct cgccctgcgg gaaaagtacg cgcagccccg cccctggcga tccacctggc
       61 aagtgctggt caccctcgtg ccacatttcg cgctgaacgg gttgatctac tggagctggg
      121 gcggtccgct gtggatcacc ctggcactgc tggtcgtcaa cagcctgttt ctcaatcgcc
      181 tggtggtggt gttccacgat ctgttgcatg gctccatgta ccgctcgcgt ggcctcggca
      241 acctgctcgg ccggctgatc agtccgttga tcttcatgcc ggcggcgcac tggcagtacg
      301 aacacaactt ccatcatgcg agcgccaacg acctcagccg ccgcgggtac ggcgacatgc
      361 cgctgctgac cgtgcgcgag tatcaggcgc tcgggccctg ggccaggttc cgctatcggg
      421 tgttgcgcca tccgctgttc ctgttcggtc cccatgcgct ctacaagctg atgatcttcc
      481 cgcgcacggt cgccaacccg gcatggccgc gacgggtcaa gcgctctgtc catctgacca
      541 acctgacgct ggtggtgatc gggctgacgc tctgggcgct cggcctggag cggctgatct
      601 ggatccagct gctgagctac gccatcagca cgccgaccac cgtgctgctg ttctacatca
      661 accaccattt cgaagaggcg cactggtcgc cagcggagca atgggacttc ttcggagcgg
      721 ccctgaaggg cacctcggtg ctggtctacc cgccggtgat gcgctggttc gcctgcggca
      781 tcggcctgca ctgcatgcac catctggtac cgcggatacc caactacaac ctggaggcct
      841 gctggaagga gaacgcgctg ttcgccgatg ccgcggtgat cccgctgttc tggaagggcc
      901 tggccaccac gcgcctgcgg ctgtgggacg agcaggccgg gcgctatgtc ggtagcgagg
      961 gctatcgtct ggcgcagcgc cataccgcga cgacctgagc gcaggtcgga ggcataccgc
     1021 ggctcagcgc cgctgccaga tcatcctgcc ggtgttgctc tcggtcacca ggtaaggcgt
     1081 gtcgaagcgg tagcgtgccg ccggctggaa gtctgccgcg ccctgcagtt gcaccagcag
     1141 caggccatgg tcgctgcgcc agtggccgcg gtactgcagc tcgccggggc ggtcataact
     1201 ccattcgctg ccgccggcca cgctgcgccg ccattgctcg atgctgccgt cggcgcggat
     1261 gcgcagggtg gtgacggtgg tcagcgaggc gaattccagc ccttcgctgt tggtcatctg
     1321 ctcgtacacc caggtgccga ccagcgccgg gtcctggttc gggtcgaccg gcgccggggg
     1381 cggcgcgacg cgctggaaca gtgtctcgcg cagcagggtt tcgccgctgt gcgggtcgcg
     1441 ggcggccagg ctggcggcga gcatgtcgtt ggcatagttg gcgctcaggt tggccagcac
     1501 ctggccggag gcgggctcgc tgatctgcgc cagcagggtt tggccatcga gcctgccgct
     1561 gagcgtgaag cggcgctggc cctcgcggta ttccccttcc acccgctcgc cctgactgcg
     1621 cagcaccagc tccacgggac gctggtcgag ggtcgcctgg tagcggccgt ccagctcggc
     1681 cgccggcagc ggcgaggcgg tgatcagcag gcagatgatc ggcagggcgc gcatgacggc
     1741 tctcctcgtg gtcccatgtt gcagcctaga tcgcccgggc cggtcttgcc gcggcggctg
     1801 gcggggatcg cgccgatagg cgcaagatag ggcc
//
LOCUS       DATIHC010000668         1811 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_26649, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000668 DATIHC010000000
VERSION     DATIHC010000668.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1811
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26649"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            406..939
                     /locus_tag="VLF16_11105"
     CDS             406..939
                     /locus_tag="VLF16_11105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013715810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat U domain-containing protein"
                     /protein_id="HSX71468.1"
                     /translation="MNNFAKASATLLSLFSASAWAAGELQGQLNVQLTAGSGCTITNG
                     GQTGGTNTFGTLAFGDYTGLDNIIDGRSLGSGGGSSFGVQCSLGTNYAIAIDNGANSA
                     GGQRRMQSGGEFIEYNLYPDSARAVPWGDGGAGGTVLAGTGTGTSEEVIVYGRVPPQT
                     TPSPGTYLDTVQVTISW"
     gene            983..1495
                     /locus_tag="VLF16_11110"
     CDS             983..1495
                     /locus_tag="VLF16_11110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013715811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat U domain-containing protein"
                     /protein_id="HSX71469.1"
                     /translation="MRRSFYPCFTALLLLAPLPAQAVDKTASIGLRVEGLPACQAGSA
                     GGGSVDFGVLDFGTHFALDNTISVAGQPNAGALRVNCQQNVPYRVLINGGQNGSVGDR
                     RMIGPSAAEVAYNLYTAADYTTVWDDSTGVTGVGNGQDQWLPVYGRVPAQAVSQVGNY
                     GDTLTVTVSW"
     gene            1495..>1811
                     /locus_tag="VLF16_11115"
     CDS             1495..>1811
                     /locus_tag="VLF16_11115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017676674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein U domain-containing protein"
                     /protein_id="HSX71470.1"
                     /translation="MSCLPRRAWSALICLPLWTPTLADTGVNDQVVSQSFELRAQVVP
                     GCLLGAGSSDVTTFGSISFGQISTLNSNLDVVSTPGSGSIVVQCSPGTNFTLALNAGN
                     HAS"
BASE COUNT          326 a          643 c          567 g          275 t
ORIGIN      
        1 ttcggcccgc ccgggccgtc ggcgcctgcg gccatgccgg cctgtcgggc gcccgaagcg
       61 ctggctcctg gccatcgtct ccctgtctta cgcgacgcga acagcgacct cgctcctccg
      121 cccatgcagc agcgggctcc agcgccggcg atctgatcga aaagtcagaa tccagcccga
      181 gttgcgggta atccatgcgc ggaatgccct gtaatccatc cgccataagc tgatgtgcgt
      241 aacggcctac aagactgcag aaagtcattt ttgatcagtt acttagctca aaactgcaca
      301 gcaagcggaa cgggagatca ggcagtaccc ggaatttgag aggcccggat cgctgaacta
      361 tggtcccaat caggggagca cttcgcctgc aggaaggatt aggccatgaa caatttcgca
      421 aaagcctcgg caacactctt gagtctcttc agcgcctcgg cctgggccgc gggggagctg
      481 caggggcagc tcaacgtgca actcaccgcc ggctccggct gcaccatcac caacggcggg
      541 cagaccggcg ggaccaacac cttcggcacc ctggccttcg gtgactacac cggcctggac
      601 aacatcatcg acggccgctc gctgggcagc ggcggcggca gctctttcgg cgtgcagtgc
      661 agcctcggca ccaactacgc catcgccatc gacaacggcg ccaattccgc cggcggccag
      721 cgccgcatgc agagcggcgg cgagttcatc gagtacaacc tgtacccgga cagcgcacgc
      781 gccgtgccct ggggcgacgg cggtgccggc ggcaccgtgc tggccggcac cggcaccggc
      841 accagcgagg aagtgatcgt ctacggccgc gtcccgccac aaaccacgcc gagccccggc
      901 acctatctgg ataccgtcca ggtcaccatc agctggtaag ccagcgcagc tttcccgaga
      961 acccgcagct caaggaagaa ccatgcgccg ctcgttctat ccctgcttca cggcattgct
     1021 cctgctcgcc ccgctgccgg cgcaggccgt cgacaagacc gccagcatcg gcctgagggt
     1081 cgagggattg ccggcctgcc aggcgggcag cgccggtggc ggcagcgtcg atttcggcgt
     1141 cctcgacttc ggcacccact tcgccctcga caacaccatc agcgtggccg gccagcccaa
     1201 cgccggcgcg ctgcgcgtca actgccagca gaacgtgccg taccgggtgc tgatcaatgg
     1261 cggccagaac ggctcggtcg gcgaccgccg gatgatcggc cccagcgccg ccgaggtggc
     1321 ctacaacctt tacaccgccg cggattacac cacggtctgg gacgacagca ccggagtcac
     1381 cggtgtgggc aacggccagg accagtggct gccggtgtac ggccgggtgc cggcgcaggc
     1441 ggtgtcgcag gtgggcaact acggcgacac cctcaccgtc acggtgagct ggtgatgtcg
     1501 tgcttgccgc gccgcgcctg gtctgccctg atctgcctgc ccctgtggac accaacgctg
     1561 gccgacaccg gggtcaacga tcaggtcgtg agccagagct tcgagctgcg cgcccaggtg
     1621 gtgcccggct gcctgctggg cgccggcagc agcgacgtga ccaccttcgg cagcatctcc
     1681 ttcggccaga tcagcacgct gaacagcaat ctggatgtgg tcagcacgcc gggcagcggc
     1741 tcgatcgtcg tgcaatgctc gcccggcacc aacttcaccc tggcgctgaa tgccggcaac
     1801 cacgccagca g
//
LOCUS       DATIHC010000669         2527 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_20560, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000669 DATIHC010000000
VERSION     DATIHC010000669.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2527
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20560"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..486
                     /locus_tag="VLF16_11120"
     CDS             <1..486
                     /locus_tag="VLF16_11120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016492984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71471.1"
                     /translation="SLDAGSVGFEAGSGILALALTSHPDFDDTPQLDENGDGKKDNDG
                     GLWHSHWVVLTKDASCGPAGLKVRDIPEGAKPKLPATWPGAPIYIDSPGYDLSVKDDA
                     ARIRVPLAAVGFPQSFNYDGVTAALQVNADLHNPLLCVTSVWDVASGDLSLPATWNEE
                     K"
     gene            488..742
                     /locus_tag="VLF16_11125"
     CDS             488..742
                     /locus_tag="VLF16_11125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012076906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2024 family protein"
                     /protein_id="HSX71472.1"
                     /translation="MNVKVFDTHVRTVDGGYLHFDVLIEGNDQALAARYAREWLASRG
                     VEDADVSQSRCQFCHSEPAHPEVAAAIAQQGYFILPLQGC"
     gene            755..1033
                     /locus_tag="VLF16_11130"
     CDS             755..1033
                     /locus_tag="VLF16_11130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009050814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rho-binding antiterminator"
                     /protein_id="HSX71473.1"
                     /translation="MNAYQPLNCDLHDFLEIACMHSYRLQVEMVEGPSFVAKALDTRT
                     APSKEEFLVLQTEAGKQEVRLDQLLAITPLDPGASFGRVELAGMICSI"
     gene            complement(1085..1294)
                     /locus_tag="VLF16_11135"
     CDS             complement(1085..1294)
                     /locus_tag="VLF16_11135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71474.1"
                     /translation="MTKEEAAVFLQHVKAAQKALEQAANYLLELEPTTAHQALRRQAA
                     EIIALTITDLELPIINRYAELNPYK"
     gene            complement(1411..2292)
                     /locus_tag="VLF16_11140"
     CDS             complement(1411..2292)
                     /locus_tag="VLF16_11140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009315247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSX71475.1"
                     /translation="MNASVETSNWPLPAGGLRFIVPPRLRRVLSRHALTSGCFPLALG
                     YYPEAAGHRMQRSEPDDHLLIYCRAGRGWLETQDGRFEVGGGDLLLLPRGAAHAYGAD
                     AGRPWTIHWVHFDGALCDDFLRLLGKAGVRRIGVQPRLLADFEALLGLHRQGLNPAHF
                     IHAAHQLQALLSSLAVLPARTTLKSGRVLDVDAVQAVMRSHLHGSLNLDELAAQFKLS
                     RFHFAKTYRALTGHAPIQDFIQLKMAQACRLLDQGSLEVRQIAEQLGYDDPYYFSRLF
                     RKVVGMAPSHYRALHHG"
     gene            2412..>2527
                     /locus_tag="VLF16_11145"
     CDS             2412..>2527
                     /locus_tag="VLF16_11145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003114170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonate-semialdehyde dehydrogenase (CoA
                     acylating)"
                     /protein_id="HSX71476.1"
                     /translation="MPHVIPQLIDGQWQASHARELIEVTDPATQEVLALAPKA"
BASE COUNT          480 a          843 c          804 g          400 t
ORIGIN      
        1 agcctggacg ccggcagcgt cggcttcgag gcaggctcgg gcatcctcgc cctggcactg
       61 acctcgcacc cggatttcga cgacaccccg cagctggatg aaaacggcga cggcaagaag
      121 gacaacgacg gcggtctctg gcactcccac tgggtggtgc tgaccaagga cgccagctgc
      181 ggccctgccg gcctcaaggt gcgcgacatt cccgaggggg ccaaacccaa gctgccggcc
      241 acctggcccg gcgcgccgat ctacatcgac tcacccggct acgacctgag cgtgaaggac
      301 gacgccgcgc gcatccgcgt gccgctggcc gccgtcggct ttccgcagag cttcaactac
      361 gacggcgtga ctgcggctct gcaggtcaat gccgacctgc acaacccgct gctgtgcgtc
      421 accagcgtgt gggacgtggc ctccggcgac ctgtcgctgc ccgccacctg gaacgaggag
      481 aaatgacatg aacgtgaaag tcttcgacac ccacgtgcgc acggtcgacg gtggttacct
      541 acacttcgac gtgctcatcg aaggcaacga tcaggcactc gccgcccgct acgcccgcga
      601 atggctcgcc agccgcggcg ttgaggacgc ggacgtctcg cagagccgct gccagttctg
      661 ccacagcgaa ccggcccacc ccgaggtagc cgccgccatc gcccagcagg gctacttcat
      721 cctcccgctg cagggttgtt aaggagataa ggccatgaac gcgtaccagc ccctgaactg
      781 cgatctgcac gacttcctgg agatcgcttg catgcacagc taccgcctgc aggtcgagat
      841 ggtcgagggt ccgagcttcg tggccaaggc gctggatacg cgcacggccc cgagcaagga
      901 ggagttcctc gtcctgcaga ccgaagcagg caagcaggag gtgcgtctcg accaactgct
      961 ggccatcacc ccgctcgacc ccggcgccag tttcggccgg gtggagctgg cggggatgat
     1021 ctgctcgatc tgaccgggca aagccgcagc tgtcaggcct gcggctttgt acaaacccaa
     1081 gcggttactt gtaaggattg agttccgcat agcgattgat gatcggcagt tcaagatcag
     1141 taatggtgag cgcaatgatc tcagcggcct gcctacgcaa ggcttgatgg gccgtggtgg
     1201 gttccaactc cagcaggtaa ttggcagctt gctcgagcgc cttctgagcg gccttgacgt
     1261 gctgtagaaa tacggcggcc tcttccttgg tcattttcac ctccaatgac atcgacaggt
     1321 cttagtcctg aaacttcgat cttaactggc acaacgccaa agattgcttg accacacccg
     1381 atacaggggc atgcacacag cggaccctgc ttacccgtgg tgcaacgccc gatagtgact
     1441 gggcgccatg cccaccacct tcctgaacag ccgcgaaaag taataggggt cgtcgtagcc
     1501 cagctgctcg gcgatctgcc gtacctccag gctgccctgg tcgagcaggc ggcaggcctg
     1561 ggccattttc agctggatga agtcctggat cggcgcgtgg ccggtcaggg cgcggtaggt
     1621 cttggcgaag tggaagcgcg acagcttgaa ctgcgcggcc agctcgtcga ggttgagact
     1681 gccgtgcagg tggctgcgca tcaccgcctg caccgcgtcc acgtccagca cccgcccgga
     1741 cttcagcgtg gtgcgcgccg gcagcacggc cagcgagctg agcagcgcct gcagctggtg
     1801 ggcggcgtgg atgaagtgcg ccgggttgag gccctggcgg tgcaggccga gcagcgcctc
     1861 gaagtccgcc agcaaacgcg gctgcacgcc gatgcgccgc acgccggcct tgcccagcag
     1921 acgcaggaag tcgtcgcaca gggcgccatc gaagtgcacc cagtggatgg tccagggccg
     1981 cccggcatcg gcgccatagg cgtgggcggc gccgcgcggc agcagcagaa gatcgccgcc
     2041 gccaacctcg aatcgtccat cctgcgtttc cagccagccg cgcccggcgc ggcagtagat
     2101 cagcaggtgg tcatccggct cggagcgctg catgcggtgc ccggctgcct ccgggtaata
     2161 gcccagggcc agcgggaagc agccgctggt cagagcatga cgggacaaca cgcgcctgag
     2221 ccggggcggc acgatgaagc gcaggccacc ggccggcagt ggccagttgg aagtttccac
     2281 cgaggcgttc atggcgccct ctttcttgct cgaatgccaa gatcgtccat ccgatgagca
     2341 agatcgtcaa tccacaggat catccgctac ggctataaca gggccacaca agaacaatca
     2401 ggaggcccac gatgccccac gtgatcccgc agctgatcga cggccaatgg caggccagcc
     2461 acgcccgcga actgatcgaa gtgaccgacc cggccaccca ggaagtcctg gccctggcgc
     2521 ccaaggc
//
LOCUS       DATIHC010000670         3500 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11150, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000670 DATIHC010000000
VERSION     DATIHC010000670.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3500
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11150"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..95
                     /locus_tag="VLF16_11150"
     CDS             <1..95
                     /locus_tag="VLF16_11150"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HSX71477.1"
                     /translation="VVFSAPVGEVQGPVKTQFGYHLVEVTSRQD"
     gene            343..1188
                     /locus_tag="VLF16_11155"
     CDS             343..1188
                     /locus_tag="VLF16_11155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020289040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HSX71478.1"
                     /translation="MNSRRLPCLTALLLAVSLPLQAADEPLDRTGQIKDDAYHAVLAG
                     EWRSSENQLRDPQRRPMETLRFFDLSPTQTVIEISPDDGWYSEILAPLLRDQGQYIAA
                     VRSSDDPQQGERADALRAKLKGDPARYDKARIIELDPKSPKLGEAESADLVLSFDDLH
                     NWEEAGSEESMFKAIYAVLKPGGKLGVTAFRAAKGDTLEAVRGSGYLPTAHVVERAKA
                     AGFVLATMEQMHSNPRDDHDHPQGVWSLPPFFAEGEKDRKDYEAVGEPDRMTLLFVKP
                     SAPRP"
     gene            1735..2436
                     /locus_tag="VLF16_11160"
     CDS             1735..2436
                     /locus_tag="VLF16_11160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007927175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HSX71479.1"
                     /translation="MGAQWKAKPKEAAANARGKIFGRLVKEIMVAARNGADPDTNAKL
                     RVAVHAAKKASMPKDTLERAIKKGAGLLGETVNFERTTYEGFAPHQVPVVVECLTDNL
                     NRTVAEIRVLFRKGQMGASGSVTWDFSHVGMIEASTDSGADPELAAIEAGAQDFEPAE
                     EGDTLFITEMTDLDAVCKALPEHGFTVNSAKIGYIPKNPVSGLSDAQMEEVEAFLEAL
                     DNHDDVQNVYVGLAG"
     gene            2446..2634
                     /locus_tag="VLF16_11165"
     CDS             2446..2634
                     /locus_tag="VLF16_11165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015277550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71480.1"
                     /translation="MSRSQFHQQHAARAEAEARRLLQQRVELGARWLDWVAAELYCLT
                     PPEYAAMVRRELQRLNDA"
     gene            2631..3029
                     /locus_tag="VLF16_11170"
     CDS             2631..3029
                     /locus_tag="VLF16_11170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003138184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HSX71481.1"
                     /translation="MRLLHIAAVCLLDDAGRLLLVRKRDTRAFMLPGGKIEADETPLA
                     ALRRELREELQLEIDEAKLVPLGQFRAPAANEADTEIEARIYRARLPHPVRPAAELEA
                     LRWHALDAPESNDLAPLLRLHVLPALRRRL"
     gene            3143..3268
                     /locus_tag="VLF16_11175"
     CDS             3143..3268
                     /locus_tag="VLF16_11175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013982366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71482.1"
                     /translation="MSKGLDRHKEAKKKPLKSAQEKRLAKRGKKSGTTLLGSHTA"
BASE COUNT          634 a         1276 c         1080 g          510 t
ORIGIN      
        1 aggtggtgtt cagcgctccg gtcggcgaag tccagggccc ggtgaagacc cagttcggct
       61 accacctggt ggaagtcacc agccgccagg actgatgctc tcggcggggg ttctgctccc
      121 gccaccttcc cttccgccaa cggcgcttcc gccgccaggc gaccccgctc cgtgttcacc
      181 tcgctcgctc gttagcccct cgctccttcc tcccgcacct ggcgaaccct cgcgccagag
      241 gcctcgccgt gtcggacgca gcgtcgtcgg cgaaatcaga ttgagcgttc cggcgcttcg
      301 ccggtcgcaa ctacatgagc tcgccgcgga ggaaaacgcc cgatgaacag ccgtcgactg
      361 ccctgcctga ccgcccttct gctcgccgtc agcctgccgc tgcaggccgc cgacgagccc
      421 ctcgaccgca ccggccagat caaggatgac gcctaccacg ccgtgctggc cggcgaatgg
      481 cgctcgtccg agaaccagct gcgcgacccc cagaggcgtc cgatggagac gctgcgcttc
      541 ttcgacctgt cgcctaccca gacggtgatc gagatcagcc cggacgacgg ctggtacagc
      601 gagatcctcg ctccgctgct gcgcgaccag ggccagtaca tcgccgcggt acgcagcagc
      661 gacgatccgc agcagggtga gcgggccgat gcgctgcgcg ccaagctgaa aggcgatccg
      721 gcgcgctacg acaaggcgcg gatcatcgaa ctggacccca agtcgcccaa gctgggcgag
      781 gcggaatcgg ccgacctggt gctgagcttc gacgacctgc acaactggga agaggccggc
      841 agcgaggaat ccatgttcaa ggccatctac gccgtgctca agccgggcgg caagctgggc
      901 gtgaccgcct tccgcgctgc caagggcgat accctcgagg ccgtgcgcgg cagcggctac
      961 ctgcccaccg cccatgtggt cgagcgtgcc aaggccgccg gcttcgtgct ggccaccatg
     1021 gagcagatgc actccaaccc gcgcgacgac cacgaccacc cgcagggcgt ctggtcgctg
     1081 ccgcccttct ttgccgaagg cgaaaaggac cgcaaggact acgaggccgt cggcgaaccc
     1141 gaccgcatga ccctgttgtt cgtcaaaccc agcgctccga ggccgtaaac gaaggcctag
     1201 aagagggttc gacccgtagg gggcattcgt ctccgtaggt gcccggcccg tagggtgccc
     1261 tcgccgaagg cagtgcacca acccggcagc accgggcgtc gagcccgctc cgggctccgc
     1321 ctggtgggct gtcgctgcgc tccgagacca ccctacgacg ataagctcgc cccgcggaaa
     1381 gtccttgcct ccatagggtg tgctcgtctc cgaatggcgt gcatgcctcc gaatggtgtg
     1441 cttctcggta gggtgccctc gccgaaggca gtgcaccaac ccggcagctc cgggcatcga
     1501 gccagctctg gaccaagcct ggtgggctgt cgctgcgctc cgagaccacc ctacggatgc
     1561 ttcgagacaa ccttggccca actggctaca ggcatttgcg ctgaccatac ctgccgcgct
     1621 agcgactctt cctgccttgc catcgccctc tcaggacgaa gccgttagaa tctgcgcctt
     1681 cagttcgccc cgcgtcgcgg ggcttccgtc agacgcaacc cgcgagaaca cgtcatgggc
     1741 gcacagtgga aagccaaacc taaagaagcc gcagccaacg ccaggggcaa gatcttcggc
     1801 cgcctggtca aggagatcat ggtcgccgcc cgtaacggcg ccgatccgga caccaacgcc
     1861 aagctgcgcg tcgccgtcca cgcggccaag aaggcctcga tgcccaagga caccctggag
     1921 cgcgcgatca agaagggcgc cggtctgctc ggcgagaccg tcaacttcga gcgcaccacc
     1981 tacgaaggct tcgccccgca tcaggtgccg gtggtcgtcg agtgcctgac cgacaacctg
     2041 aaccgcaccg tggcggaaat ccgcgtgctg ttccgcaagg gccagatggg tgcttccggt
     2101 tcggtgacct gggacttcag ccacgtcggc atgatcgaag cctccaccga cagcggtgcc
     2161 gaccctgagc tggccgccat cgaagccggt gcccaggact tcgagccggc cgaggaaggc
     2221 gacaccctgt tcatcaccga gatgaccgac ctcgacgccg tgtgcaaggc gctgccggag
     2281 catggcttca ccgtcaactc ggcgaagatc ggctacatcc cgaagaaccc ggtcagcggc
     2341 ctgagcgacg cgcagatgga agaagtcgaa gccttcctcg aagccctcga caaccacgac
     2401 gacgtgcaga acgtctacgt cggcctcgcc ggctgatcgc cgcgcgtgag ccgcagccag
     2461 ttccaccagc aacacgctgc gcgcgccgag gccgaagccc ggcgcctgct gcagcagcgc
     2521 gtcgagctcg gcgcgcgctg gctggactgg gtggccgccg aactgtactg cctcaccccg
     2581 cccgaatacg cggccatggt gcgccgcgag ctgcaacgcc tgaacgacgc atgaggctgc
     2641 tgcacatcgc cgccgtctgc ctgttggacg acgccggccg cctgctgctg gtacgcaagc
     2701 gcgacacccg cgccttcatg ctgcccggtg gcaagatcga agccgacgag acgccgcttg
     2761 ccgccctgcg ccgcgagctg cgcgaagaac tgcagttgga aatcgacgag gccaaactcg
     2821 tcccactcgg gcagttccgt gccccggccg ccaacgaggc cgacaccgag atcgaggcac
     2881 gcatctaccg cgcccgcctg ccgcacccgg tccgccccgc cgccgaactg gaggcgctgc
     2941 gctggcatgc cctcgacgcc ccggaaagca acgacctggc gccgctgctg cgcctgcacg
     3001 tgctgccggc cctgcgccga cgcctctgaa cggccggccc gttcggggct atgctcaaga
     3061 catcgcatgg gcaggctggc gcagcctggg aggtggcaaa tcgtttcgtt cgcaccgatc
     3121 gccccttacg gaggaatcca ccatgagcaa aggtctcgac aggcacaagg aggcgaagaa
     3181 gaagcctctg aagtccgccc aggaaaaacg cctggccaag cgcggcaaga agtccggcac
     3241 cacactgctg ggtagccaca ccgcctgatc cacctcgcac ccggcgctcg ccgggtgctt
     3301 cgtttcctcc cctcgcgaat gcctggccag gcgccagtac ccattcgtcc agaaccgagc
     3361 gcaacgctga acttcccgag gcagacgggt cggaacccca ccgttacgtt tacccgagga
     3421 ggatgccgat gcttgacctg accacctgga acctgaccgt tcccgccacc gaatccgcca
     3481 cgctgatcag caccgaacgc
//
LOCUS       DATIHC010000671         3149 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_32331, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000671 DATIHC010000000
VERSION     DATIHC010000671.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3149
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32331"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..486
                     /gene="dcd"
                     /locus_tag="VLF16_11180"
     CDS             <1..486
                     /gene="dcd"
                     /locus_tag="VLF16_11180"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009394 - 2'-deoxyribonucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HSX71483.1"
                     /translation="RGADDSRVISYGVSSYGYDVRCAAEFKVFTNIHSAVVDPKNFDE
                     KSFVDINSDVCIIPPNSFALARTVEYFRIPRDVLTICLGKSTYARCGIIVNVTPLEPE
                     WEGHVTLEFSNTTNLPAKIYAHEGVAQMLFLQSDEACEVSYADRGGKYQGQTGVTLPK
                     A"
     gene            556..1095
                     /locus_tag="VLF16_11185"
     CDS             556..1095
                     /locus_tag="VLF16_11185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71484.1"
                     /translation="MKWLKALVLLLMLGSGPALAELQVFTDGDVLGLMPDAPPSAFIE
                     RLGPPTVELPLRQGRSGLLYGNSLLLVFEGERLREVRCWLVPQFTDELFLGWLQDVER
                     EGKPEGFVVDRYVRLGITREEVSRVLVGLEGDGDERSDLRMKNGRQLWLGYGAAPDYS
                     AGDDAEQQVLVSISVLYGG"
     gene            1159..1338
                     /locus_tag="VLF16_11190"
     CDS             1159..1338
                     /locus_tag="VLF16_11190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012313047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71485.1"
                     /translation="MYRTAIHLSPGPQDRWLNGTIPGQPDPDVPDQPGKPDLPPVPGE
                     PTIPDQPPPAPVAWL"
     gene            complement(1339..2166)
                     /gene="nadE"
                     /locus_tag="VLF16_11195"
     CDS             complement(1339..2166)
                     /gene="nadE"
                     /locus_tag="VLF16_11195"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014592584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003952 - NAD+ synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0004359 - glutaminase activity [Evidence
                     IEA];
                     GO_function: GO:0008795 - NAD+ synthase activity [Evidence
                     IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-dependent NAD(+) synthetase"
                     /protein_id="HSX71486.1"
                     /translation="MSNRQAEIAAALDVVPPFADEAALVAEIERRKGFIKNCLTNSGL
                     KVLVLGISGGVDSTTAGRLAQVSVEELRAESGDDGYRFIAVRLPHGTQHDEKDAQDSL
                     TFVAADENATVNIADSVRGLGQQVEHMQQLSEARRDFVNGNVKARIRMVAQFTIANAT
                     NGLVIGTDHAAEAVMGFFTKFGDGACDLAPLSGLVKNQVRAIARHLGAPQHLVMKTPT
                     ADLEELRPGKPDEEAHGVSYAEIDAFLHGEKVSDAAYATIVRTYDNTRHKRELPLVP"
     gene            complement(2177..>3149)
                     /gene="pncB"
                     /locus_tag="VLF16_11200"
     CDS             complement(2177..>3149)
                     /gene="pncB"
                     /locus_tag="VLF16_11200"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004516 - nicotinate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0019358 - nicotinate nucleotide salvage
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HSX71487.1"
                     /translation="FLERIPFMKPDFIRFLGLFRFNPRHVQTGIEDGQLCIRLRGPWL
                     HVILYEIPLLAIISEVRNRYRYREVLLEQASERLYEKFDWLKREASADELDGFQVADF
                     GTRRRFSFRVQEQMVKIMKRDFPGRFVGTSNVHLARELDLKPLGTMAHEWLMAHQQLG
                     PRLIDSQSAALDCWVREYRGLLGIALTDCITMDAFLRDFDLYFAKLFDGLRHDSGDPL
                     QWAEKAIAHYEKLGIDPMSKTLVFSDGLDFEKSLQLYRALHGRIHVSFGVGTRLTCDI
                     PGVEPMNIVIKMTACNGQPVAKISDTPGKTQCRDENFVSYLKHVFRV"
BASE COUNT          514 a          968 c         1085 g          582 t
ORIGIN      
        1 cgcggtgcag acgacagccg ggtgatctcc tacggcgtct ccagctacgg ctacgacgta
       61 cgctgcgccg ccgaattcaa ggtgttcacc aatatccact cggcggtggt cgacccgaag
      121 aacttcgacg agaagagctt cgtcgacatc aacagcgacg tctgcatcat cccgccgaac
      181 tccttcgccc tggctcgcac cgtcgagtac ttccgcatcc cgcgcgatgt gctgaccatc
      241 tgcctgggca agagcaccta tgcccgctgc ggcatcatcg tcaacgtcac cccgctggag
      301 ccggagtggg agggtcatgt gaccctggag ttctccaaca ccaccaacct gccggcgaag
      361 atctacgccc atgaaggcgt ggcgcagatg ctgttcctgc agtccgacga ggcctgcgaa
      421 gtgtcctacg ccgaccgcgg cggcaagtac cagggccaga ccggcgtgac gctgccgaag
      481 gcctgatctg agccagttca aagagccggg catcgcccgg cttttttctg tccgcgagac
      541 aaggaggtga gtgtgatgaa gtggctgaag gcgctggtgc tgctgctgat gctgggttcc
      601 ggcccggcac tggccgagct gcaggtattc accgatggcg acgtgttggg cctgatgccg
      661 gatgcgccac cctctgcctt tatcgaacgg ctgggcccgc ccaccgtgga gctgccgtta
      721 cgccaagggc gaagcggatt gctgtacggc aattcactgc tgctggtgtt cgagggcgag
      781 cgcttgcgcg aggtgcgttg ctggctcgta ccacagttca ccgatgagct ttttctcggc
      841 tggctgcagg acgtggagcg cgagggcaag ccggagggtt tcgtggtcga ccggtacgtg
      901 cgcctgggga taacacgcga ggaggtgagc cgcgtgctcg taggcctgga gggcgatggc
      961 gacgagcgct ccgacctgcg catgaagaat ggcaggcagc tgtggctggg gtatggcgct
     1021 gcgcccgact acagtgccgg cgacgatgcc gagcagcagg tgctggtgtc gatcagcgtg
     1081 ctgtacggcg gttaaatcct gtgaattctt ccacgcgggc gaactctacc ttcagagttc
     1141 gccgtggagg gcacaaccat gtacaggaca gcgattcatc tatcgccggg gccgcaggat
     1201 cgttggctca acggcaccat tcccggccag cccgatccgg atgtgccgga tcagccgggc
     1261 aagccggacc tgccgccggt accgggcgag ccgaccattc ccgatcagcc gccgcccgca
     1321 ccggtggcct ggctctgatc agggcaccag cggcagctcg cgcttgtggc gcgtgttgtc
     1381 gtaggtgcgc acgatggtgg cgtaggccgc gtcgctgacc ttttcgccgt gcaggaaggc
     1441 gtcgatttcg gcgtagctca cgccatgagc ctcttcgtcc ggcttgcctg ggcgcagttc
     1501 ttccaggtcg gcggtcgggg tcttcatcac cagatgctgt ggggcgccga ggtgcctggc
     1561 gatggcacgc acctgattct tcaccaggcc ggacagcggg gcgaggtcgc aggcgccgtc
     1621 gccgaacttg gtgaagaagc ccatcaccgc ctcggcggcg tggtccgtgc cgatcaccag
     1681 gccgttggtg gcgttggcga tggtgaactg ggcaaccatg cggatgcgtg ccttgacgtt
     1741 gccgttgacg aagtcgcggc gggcctctga cagctgctgc atgtgttcga cctgctggcc
     1801 caggccgcgg acgctgtcgg cgatgttgac cgtggcgttc tcgtcggccg cgacgaatgt
     1861 cagcgagtcc tgggcgtcct tctcgtcatg ctgggtaccg tgcggcagac gcacggcgat
     1921 gaagcggtaa ccgtcgtcgc cgctctcggc gcgcagctcc tctacggaca cctgggccag
     1981 gcgcccggcg gtggtggagt cgacgccgcc gctgatgccc agcaccagca ccttcaggcc
     2041 cgaattcgtc aggcagttct tgatgaagcc cttgcgccgc tcgatctccg ccaccagggc
     2101 ggcctcgtcg gcgaagggcg gcaccacgtc cagggcggcg gcgatttcgg cttggcggtt
     2161 gctcatgctg gggtcctcat acgcggaaaa cgtgtttcag gtagctgacg aagttttcgt
     2221 cgcggcactg ggtcttgccc ggtgtgtcgg aaatcttggc gacgggctgg ccgttgcagg
     2281 cggtcatctt gatcacgatg ttcatcggct ccacgcccgg tatgtcgcag gtcagccggg
     2341 tgccgacgcc gaagcttacg tggatacgac cgtgaagtgc acggtagagc tgcagcgact
     2401 tttcgaagtc gaggccgtcg gagaacacca gggtcttgct catggggtcg atgcccagtt
     2461 tctcgtaatg cgcgatggcc ttttccgccc actgcagcgg gtcgccggag tcgtggcgca
     2521 ggccgtcgaa cagcttggcg aagtacagat cgaaatcgcg caggaaggcg tccatggtga
     2581 tgcagtcggt cagggcgatg ccgagcaggc cgcggtactc gcggacccag cagtccagcg
     2641 cggcgctctg gctgtcgatc aggcgcgggc cgagctgctg gtgggccatc agccactcgt
     2701 gggccatggt gccgagcggc ttgaggtcca gctcgcgggc caggtgcacg ttgctggtgc
     2761 cgacgaagcg tccggggaag tcgcgcttca tgatcttcac catctgctcc tgcacccgga
     2821 aggagaagcg ccggcgggta ccgaagtcgg cgacctggaa accgtccagc tcatcggccg
     2881 aggcctcgcg cttgagccag tcgaacttct cgtacaggcg ctcgctggcc tgctccagca
     2941 gcacttcgcg gtagcgatag cggttgcgca cctcgctgat gatcgccagc agcgggatct
     3001 cgtagaggat cacgtgcagc caggggccgc gcaggcgaat gcacagctgg ccatcctcga
     3061 tgccggtctg cacgtggcgc gggttgaagc ggaacaggcc gaggaagcgg atgaagtccg
     3121 gcttcatgaa cgggatgcgc tcgaggaag
//
LOCUS       DATIHC010000672         2960 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43822, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000672 DATIHC010000000
VERSION     DATIHC010000672.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2960)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2960)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2960
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43822"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..501)
                     /locus_tag="VLF16_11205"
     CDS             complement(<1..501)
                     /locus_tag="VLF16_11205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline racemase family protein"
                     /protein_id="HSX71488.1"
                     /translation="MQRIRVLDSHTGGEPTRLVLEGFPDLGRGSMAERRQLLAERFDE
                     WRAASVLEPRGSDVLVGALLCEPVDPSACAGVIFFNNTGYLGMCGHGTIGLVVSLAHL
                     GRIGPGVHRIETPVGTVEATLHDDRSVSVRNVPAYRYRKAVAVEVPGHGRVTSDIAWG
                     GNWFFLI"
     gene            complement(612..1283)
                     /locus_tag="VLF16_11210"
     CDS             complement(612..1283)
                     /locus_tag="VLF16_11210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013793489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HSX71489.1"
                     /translation="MPLPRFNAPNLGIVPSASEVIAKHLRDAIISGQFAEDEPIRQDD
                     IAGLFNVSKIPVREALKRLEAEGLVLFQRNKGAVVTRISEPEMAQMFEVRVLLEVRAI
                     RLAVPNMTEDTFAAAERICEAFLGEEDVGRWAELNWQLHACLYEPAQRPFLVGLIRSI
                     HDKLERYLRMQMSLSEGKDRADHEHREIIAACRAGDADTAARLIETHINGVCQTLYEH
                     LPNRL"
     gene            complement(1346..2287)
                     /locus_tag="VLF16_11215"
     CDS             complement(1346..2287)
                     /locus_tag="VLF16_11215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017676160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX71490.1"
                     /translation="MRKSLMRMTFRQLRVFRAVCESRSYSRAAEEMALTQPAVSLQVR
                     QLEELIGQPLFDYVAKKLHLTPAAEALLRASEDVFGRLEALDMQLSDLQGSLQGQLSL
                     AVESSAKYLVPHLFAAFREQHPEVSLQLVVVNHGQAVRRLSASRDDLLIMSQPPGDQP
                     LDFFPFLNNPIVAVAPPQHPLCTLEKLRLADLTAFPLLVREAGSGTRRACEEYCHQKR
                     AHFAQTLEVGSSESQIEAVIAGLGLALLPRHAVRLELASGLLRELPVEELPLQRSWCV
                     VHPRGKHLSPVAQAFRDFIRGERAQIAALEERFSRAG"
     gene            2478..>2960
                     /locus_tag="VLF16_11220"
     CDS             2478..>2960
                     /locus_tag="VLF16_11220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HSX71491.1"
                     /translation="MIKKILIANRGEIAVRIVRACAEMGIRSVAIYSDADRQALHVKR
                     ADEAHSVGDDPLAGYLNPRKLVNLAVETGCDALHPGYGFLSENAELAEICAERGIKFI
                     GPSAEVIRRMGDKTEARRSMIAAGVPCTPGTEGNVADIAEALSEAERIGYPVMLKATS
                     G"
BASE COUNT          478 a          968 c         1042 g          472 t
ORIGIN      
        1 gatcaggaag aaccagttgc cgccccaggc gatatcgctg gtcacccggc catggcccgg
       61 cacctcgacg gcgaccgcct tgcggtagcg gtaggccggc acgttgcgca cgctcaccga
      121 gcggtcgtcg tgcagggtcg cctcgacggt gccgaccggc gtttcgatcc tgtgcacgcc
      181 aggtccgatg cggcccaggt gcgccaggga gaccaccagg ccgatggtgc cgtggccgca
      241 catgccgagg tagccggtgt tgttgaagaa gatcactccg gcacaggcgc tggggtcgac
      301 cggctcgcac agcagggcgc cgaccagcac gtcgctgccg cgcggctcca gcacgctggc
      361 ggcgcgccac tcgtcgaagc gctcggccag cagctggcgg cgctcggcca tgctgccgcg
      421 gccgaggtcg ggaaagcctt cgaggaccag gcgggttggt tcaccgccgg tgtgcgagtc
      481 gagtacacgg atgcgttgca tggatggccc ctggcgatgg atgttccagc aagggtgccg
      541 ctccggcggc tccgacggct tgaggcattt cggtggtcgc catgacgaaa tcggcacagc
      601 ggcgagacgc ctcagaggcg gttgggcagg tgctcgtaga gggtctggca gacgccgttg
      661 atgtgcgtct cgatcagccg ggcggcggtg tcggcgtcgc cggcgcggca ggcggcgatg
      721 atctcgcggt gctcgtggtc ggcgcggtcc ttgccctcgg acaggctcat ctgcatgcgc
      781 agatagcgct ccagcttgtc atggatcgag cggatcaggc cgaccaggaa gggtcgctgc
      841 gccggctcgt agaggcaggc gtgcagctgc cagttgagtt cggcccagcg gccgacgtct
      901 tcctcgccga ggaaggcttc gcagatgcgc tcggcggcgg cgaaggtgtc ctcggtcatg
      961 ttcggcaccg ccaggcggat cgcccgcacc tcgagcagta cgcgtacctc gaacatctgc
     1021 gccatctccg gctcggagat gcgcgtgacc accgcgccct tgttgcgctg gaacagcacc
     1081 aggccttcgg cctccaggcg cttgagggcc tcgcgcacgg ggatcttgct gacgttgaac
     1141 agcccggcga tgtcgtcctg gcggatcggc tcatcctcgg cgaactgccc ggagatgatg
     1201 gcgtcgcgca ggtgcttggc gatgacctct gaggccgagg gaactatccc aaggttgggg
     1261 gcattgaagc ggggtagggg cacgatgcgt caccgggtcg gctggtcgat gcgaatatca
     1321 tatacgaaat ccctgatttt ccagttcacc ccgcccggct gaagcgctcc tccagcgcgg
     1381 cgatctgcgc gcgctcgcca cggatgaagt cgcggaaggc ctgagccacc ggcgacaggt
     1441 gcttgccgcg cgggtgcacc acgcaccagc tgcgttgcag cggcagttct tccaccggca
     1501 gttcgcgcag cagcccgctc gccagttcca ggcgcacggc gtgacgcggc agcagggcca
     1561 gtccgaggcc ggcgatgacc gcctcgatct gggattcact ggagccgacc tcgagcgtct
     1621 gcgcgaagtg ggcgcgcttc tggtggcaat actcctcgca ggcgcggcgg gtgcccgagc
     1681 cggcctcgcg gaccagcagc ggaaaggcgg tgagatcggc caggcgcagc ttctccagcg
     1741 tgcacagcgg gtgctgcggc ggtgccaccg cgacgatggg gttgttgagg aagggaaaga
     1801 aatccagcgg ctggtcgccg gggggctgcg acatgatcag caggtcgtcg cggctggccg
     1861 acaggcggcg caccgcctgg ccatggttga ccaccaccag ctgcaggctg acctccgggt
     1921 gctgctcgcg gaaggcggcg aacaggtgcg gcaccaggta cttggcgctg gactccacgg
     1981 ccaggctcaa ctggccctgt agcgagccct gcaggtcgga gagctgcatg tccagcgcct
     2041 ccagccggcc gaacacgtcc tcgctggcgc gcagcagggc ctcggcggcg ggggtcaggt
     2101 gcagcttctt ggccacgtaa tcgaacagcg gctggccgat cagctcctcc agctggcgca
     2161 cctgcaggct caccgccggc tgggtcaggg ccatctcctc ggccgcccgg ctgtaggagc
     2221 gactctcgca caccgcacgg aacacccgca gctggcgaaa agtcattcgc atcaaggact
     2281 tgcgcatctg tagaggagct ccagcaggcg atgaatgcgg caactataag tcttgactaa
     2341 tgcttatccc aataattatt catttttggt aatccagccg cggcgctagc ttagaaagca
     2401 agaccgccgc gggctgtgcg gtcattcgcg gaccgctttg cggcggtcct ttgctcacgt
     2461 gatcgaggac caggctcgtg atcaagaaga ttctcatcgc caaccgcggc gagatcgcgg
     2521 tgcgcatcgt gcgtgcctgc gccgaaatgg gcatccgctc ggtggccatc tactccgatg
     2581 cggaccgcca ggcgctgcac gtcaagcgtg ccgacgaggc gcacagcgtc ggcgacgacc
     2641 cgctggccgg ctacctgaac ccgcgcaagc tggtgaatct ggcggtggag accggctgcg
     2701 acgcgctcca cccgggctac ggcttcctct cggagaacgc cgagctggcg gagatctgcg
     2761 ccgagcgcgg gatcaagttc atcggcccct cggccgaggt gatccgccgc atgggcgaca
     2821 agaccgaggc gcggcgcagc atgatcgccg ccggcgtgcc ctgcaccccg ggcaccgagg
     2881 gcaacgtcgc cgacatcgcc gaggcgctgt ccgaggccga gcgcatcggc tatccggtga
     2941 tgctcaaggc cacttccggc
//
LOCUS       DATIHC010000673         2360 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_1019, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000673 DATIHC010000000
VERSION     DATIHC010000673.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2360)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2360)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2360
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1019"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            189..>2360
                     /locus_tag="VLF16_11225"
     CDS             189..>2360
                     /locus_tag="VLF16_11225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019581889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel MscK"
                     /protein_id="HSX71492.1"
                     /translation="MSSLRPLLAGLLLSLCLTSPLFAAEPPSTKAVQDSLNGLEARKL
                     PEAEHNALKARLEETLAFLANRDESRERLEALKVQLRDAPRLTSEAQRELTRIKATPP
                     TAIASRFARSSVQQLEQMLAERSTQLSDWQQQLTEASSLLITAQTRPERAQAEISSNQ
                     TRTMQINNLLKVGKEGGKALSGERRDQLNAELAALEAQTELLRQELAGNNLLQDLGSA
                     RHELLQERIRRLDQESLDLQALISEKRRATSEQTVAELSREAEKATPDSLLAQESATN
                     LKISDYLLRATERLNQVTRMNLEAKQQLDSVTQAAQALEEQVSVLKGSLLLAKILYQQ
                     KQALPRLQLDSDLANEIADIRLYQFELNQERGKLDDLNVYVDSLLASQPSEQVTPELR
                     KTLLDLATTRGQLLDHMNRELNALLNESINLQLNQKQLQAMVDELRDTLEEQMFWIPS
                     NKPLDFAWLQQVPNLLERQLKEMPWGSGVRELGAGLVDRPWLFIPLLLVIGGLLWRRS
                     WLFGKLQQLHEDIGHYKRDGQLHTPLAVFLNVLLALPVTLFLTLCGIALLVDARGQNA
                     TLGSALLEMAQAWLVFYTLYRILAPGGVGELHFRWPPARVTYLRTQVRRLGLVVMALV
                     AVVTVAEHQPAVLAEDVIGIFVVLGCFALMAWLLSRVLLARPMREDGSPFRTVIGLGF
                     TLLPIGLFVAVCFGYYYTALKLTDRLIDTLYLLILWLVLEAA"
BASE COUNT          418 a          837 c          749 g          356 t
ORIGIN      
        1 ctgacctgga cagtcgcggt gatggaaggg aacaaggtgc gcaaggtcgg cgtccgattc
       61 cccgaaggcc aggccaaacc cggactcttc ctctgacagg cgcgccgaat ctgccgtgca
      121 cctcggcgcg ggcggtgcgc ctggcatatc attagccgca tttccgtcca agagccgcac
      181 ccgcgaccat gtcttccctg cgccccctgc tagccggcct gctgctgagc ctgtgcctga
      241 cctctcccct cttcgccgcc gaaccgccgt cgaccaaggc cgtgcaggac agcctgaacg
      301 gcctcgaagc gcgcaagctg ccggaggccg agcacaacgc cctgaaggcg cgcctggaag
      361 aaaccctggc gttcctggcc aaccgcgacg agagccgcga gcgcctggag gcgctcaagg
      421 tgcagctgcg cgatgccccg cgcctgacca gcgaggccca gcgcgagctg acccggatca
      481 aggccacccc gccgaccgcc atcgccagcc gtttcgcgcg ctccagcgtg cagcagctgg
      541 agcagatgct ggccgagcgc agcacgcaac tgagcgactg gcagcaacag ctgaccgagg
      601 ccagcagcct gctgatcacc gcccagaccc gcccggaacg cgcccaggcg gagatcagca
      661 gcaaccagac ccgcaccatg cagatcaaca acctgctcaa ggtcggcaag gaaggcggca
      721 aggcgctcag cggcgaacgc cgcgaccagc tcaacgccga gctggccgcc ctcgaagcgc
      781 agaccgagct gctgcgccag gagctggccg gcaacaacct gctgcaggac ctgggcagcg
      841 cgcgccacga gctgttgcag gagcgcatcc gccgcctcga ccaggagagc ctggacctgc
      901 aggcgctgat cagcgagaag cgccgcgcga cttccgagca gacggtcgcc gaactctccc
      961 gcgaggccga gaaggccacg cccgacagcc tgctggccca ggagagcgcg accaacttga
     1021 agatttccga ctacctgctg cgtgccaccg agcgcctcaa ccaggtcacc cgcatgaacc
     1081 tggaggccaa gcagcagctg gacagcgtga cccaggcggc ccaggccctg gaagagcagg
     1141 tcagcgtgct caagggcagc ctgttgctgg ccaagatcct ctaccagcag aagcaggcct
     1201 tgccgaggct gcagctggac agcgacctgg ccaacgaaat cgccgacatt cgcctgtatc
     1261 agttcgagct gaaccaggaa cgcggaaagc tcgacgacct caatgtctac gtcgacagcc
     1321 tgctggccag ccagccgagc gagcaggtca cgccggagct gcgtaagacc ctgctggacc
     1381 tggccaccac ccgcggccag ttgctcgacc acatgaaccg cgagctcaat gcgctgctca
     1441 acgaatccat caacctgcag ctgaaccaga agcagctgca ggcgatggtg gacgagctgc
     1501 gcgatacgct ggaagagcag atgttctgga ttcccagcaa caagccgctc gatttcgcct
     1561 ggctgcagca ggtgccgaac ctgctcgagc gtcagctcaa ggaaatgcca tggggctccg
     1621 gcgtgcgcga gctgggcgcc ggcctggtcg accgtccttg gctgttcatt ccgctgctgc
     1681 tggtgatcgg cgggctgctg tggcggcgta gctggctgtt cggcaagctg caacagctgc
     1741 acgaggacat cggccactac aagcgcgacg gtcagttgca tacgccgctg gcggtcttcc
     1801 tcaacgtcct gctggcgctg ccggtgacgc tgttcctcac cctctgcggc atcgccctgc
     1861 tggtcgacgc ccgcgggcag aacgccaccc tgggcagtgc cttgctggaa atggcccagg
     1921 cctggctggt gttctacacc ttgtatcgca tcctcgcccc gggcggagtc ggcgaactgc
     1981 acttccgctg gccgccggcg cgcgtcacct acctgcgcac ccaggtgcgc cgtctgggcc
     2041 tggtggtgat ggcgctggtc gcggtggtca ccgtggccga acaccagccc gccgtgctgg
     2101 ccgaggacgt gatcggcatc ttcgtggtac tcggctgctt cgccctgatg gcctggctgc
     2161 tcagccgcgt gctgctggcg cggccgatgc gcgaggacgg ctcgccgttc cgcaccgtca
     2221 tcggcctggg cttcaccctt ctgccgatcg gtctgttcgt cgccgtgtgc ttcggctact
     2281 actacacggc gctcaagctc accgaccggc tgatcgacac gctctacctg ctgatcctct
     2341 ggctggtgct ggaggccgcc
//
LOCUS       DATIHC010000674         2234 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17273, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000674 DATIHC010000000
VERSION     DATIHC010000674.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2234)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2234)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2234
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17273"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..455
                     /locus_tag="VLF16_11230"
     CDS             <1..455
                     /locus_tag="VLF16_11230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003459332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HSX71493.1"
                     /translation="DALIAAWKDASRYDSQVLVEQMIDGPEYTIAMLRGQVLPPIGLG
                     TPHTFYDYDAKYLASDTQYRIPCGLPADKEAELKELTARACEAVGTQGWARADVMQDA
                     SGKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVEARG"
     gene            459..1322
                     /locus_tag="VLF16_11235"
     CDS             459..1322
                     /locus_tag="VLF16_11235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013792648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HSX71494.1"
                     /translation="MVATLRHHSQPIGGATRRKPAPARGASRMVAREPLAARLPKPDF
                     GVLKRLTWPLLLVALGLGTYELAQRLLPYADRPIARVSVQGELSYISQKAVKERIAPY
                     VSASFFTVDLAGMRAELEQMPWIAHAEVRRVWPDQVAISLEEQLPVARWGDGALLNNQ
                     GRAFAPREAANYEHLPLLSGPKRAQQRVMQQYQVLSQLLRPLGFTISSLELREHGSWF
                     ISTAQGVDILLGRDHLVDKMRRLASIHDKVLKQQIANIARIDLRYANGLAVAWRTPVA
                     PAATETTVAVQ"
     gene            1346..>2234
                     /gene="ftsA"
                     /locus_tag="VLF16_11240"
     CDS             1346..>2234
                     /gene="ftsA"
                     /locus_tag="VLF16_11240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HSX71495.1"
                     /translation="MASVQSGKMIVGLDIGTSKVVALVGEVTADGELDIVGIGTSPSR
                     GLKKGVVVNIESTVQSIQRAIEEAQLMAGCRIHSAYVGIAGNHIRSLNSHGIVAIRDR
                     EVSPADLERVLDAAQAVAIPADQRVLHTLPQDYVIDNQEGVREPLGMSGVRLEAKVHV
                     VTCATNAAQNVEKCVRRCGLEVDDIILEQLASAYSVLTEDEKELGVCLVDIGGGTTDI
                     AIFTEGAIRHTAVIPIAGDQVTNDIAMALRTPTQYAEEIKIRYACALAKLAGAGETIK
                     VPSVGERAPRDLSRQSLAEV"
BASE COUNT          394 a          752 c          753 g          335 t
ORIGIN      
        1 tcgatgcact gatcgccgcc tggaaggatg ccagtcgcta cgactcgcag gtgctggtcg
       61 agcagatgat cgacggcccc gaatacacca ttgccatgct gcgcggccag gtgctgccac
      121 ccatcggcct gggcacgccg cacaccttct acgattacga cgccaagtac ctggccagtg
      181 acacccagta ccgcattccc tgcggcctgc cggccgacaa ggaagccgag ttgaaggagc
      241 tgaccgcacg cgcctgcgaa gccgtgggca cccagggctg ggcgcgcgcc gatgtgatgc
      301 aggacgccag cggcaagttc tggctgctgg aagtgaacac cgtgccgggc atgaccgatc
      361 acagcctggt gccgatggcc gcgcgcgccg ccggtctgga tttccagcag ctggtgctgg
      421 cgatcctggc cgacagcgtc gaggcgaggg gctaagccat ggtcgccacc ctccgtcatc
      481 actcgcagcc gatcggcggt gctacccggc gcaagccggc gcctgcccgc ggcgcgagcc
      541 ggatggtggc cagggagcca ttggccgcgc gtctgccgaa gccggatttc ggcgtgctca
      601 agcgcctgac ctggccgctg ctgctggtag cgctcggctt gggaacctat gagctggcac
      661 agcgtctgct gccctatgcc gatcggccga tcgcccgggt gagcgtgcag ggcgagctga
      721 gttacatcag ccagaaggcc gtgaaggagc gcatcgcgcc gtacgtttcg gcgagctttt
      781 tcaccgtcga cctggccggc atgcgtgccg agctggagca gatgccctgg atcgcccacg
      841 ccgaagtccg tcgggtttgg cccgatcagg tggcgatcag cctggaggaa caattgccgg
      901 tggcccgctg gggcgatggc gcgctgctga acaaccaggg ccgcgccttc gccccgcgcg
      961 aggcggccaa ctacgaacac ctgccgctgc tgtccgggcc caagcgcgcc cagcagcgtg
     1021 tgatgcagca ataccaagtg ctcagccagc tgttgcggcc gctgggcttc accatcagca
     1081 gcctggagct gcgcgagcat ggcagctggt tcatcagcac cgcccagggc gtggacatcc
     1141 tgctcgggcg ggatcatctg gtcgacaaga tgcggcgtct cgccagcatt cacgacaagg
     1201 tgctgaagca gcagatcgcg aatatcgcgc gcatcgacct gcgttacgcc aacggcctgg
     1261 ccgtggcctg gcgtacgccg gtggcgccgg cggcgaccga aacgacggtc gccgtccagt
     1321 gaatcgaggg agaacagaag aaatcatggc aagcgtgcag agcggcaaga tgatcgtcgg
     1381 cctggacatc ggtacctcca aggtggtggc actggtgggc gaggtgaccg ccgatggcga
     1441 gctggacatc gtcggcatcg gcaccagtcc gtcgcgcggc ctgaagaagg gcgtggtggt
     1501 gaacatcgag tccaccgtgc aatccatcca gcgcgccatc gaagaggcgc agctgatggc
     1561 cggctgccgc atccactcgg cctatgtcgg catcgccggc aatcacatcc gcagcctcaa
     1621 cagccacggc atcgtcgcca tccgcgaccg cgaagtgagc ccggccgacc tggagcgcgt
     1681 gctcgacgcc gcccaggcgg tggccattcc cgccgaccag cgcgtgctgc acaccctacc
     1741 gcaggactac gtgatcgata accaggaggg cgtgcgcgag ccgctcggca tgtccggcgt
     1801 gcgcctggaa gccaaggttc acgtggtcac ctgcgccacc aacgccgcgc agaacgtcga
     1861 gaagtgcgtg cgtcgctgcg gcctggaagt ggacgacatc attctggagc agctggcctc
     1921 ggcctactcg gtcctgaccg aggacgaaaa ggagctgggc gtctgcctgg tggacatcgg
     1981 cggcggcacc accgacatcg ccatcttcac cgagggcgcg attcgccata cggcggtgat
     2041 cccgatcgcc ggcgatcagg tcaccaacga catcgccatg gccctgcgta cgccgaccca
     2101 gtacgccgaa gagatcaaga tccgctacgc ctgcgccctg gccaagctgg ccggcgccgg
     2161 cgagaccatc aaggtgccga gtgtcggcga gcgcgccccg cgcgacctgt cccgccagtc
     2221 cctggccgag gtgg
//
LOCUS       DATIHC010000675         1574 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36869, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000675 DATIHC010000000
VERSION     DATIHC010000675.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1574
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36869"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            294..602
                     /locus_tag="VLF16_11245"
     CDS             294..602
                     /locus_tag="VLF16_11245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71496.1"
                     /translation="MYLQRILLPIVAFAVLIAPAVQAQAGQVGGQIGISLAIVKSCQV
                     ASETSFDTYRVSSQGCEASAFQLQDERGRPMAAQPSGQDAVTRVESADGAGSRVVVYW
                     "
     gene            complement(610..>1574)
                     /locus_tag="VLF16_11250"
     CDS             complement(610..>1574)
                     /locus_tag="VLF16_11250"
                     /inference="COORDINATES: protein motif:HMM:NF017079.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="spore coat protein U domain-containing protein"
                     /protein_id="HSX71497.1"
                     /translation="GLLALLMLLGLLAASPARAVCITATTAVNLGSTNSLSLRTQPQQ
                     AAAGAGLGCEGVLTLLTAAYVRVTVNTPAPLLLRDGNGNQIPFQIYQDIGYTQPLPPG
                     TPRQLDSVNLLTLGASATAIALYFRTDIGPNVPAGTYTASVNLRWQWAICTLGLINIC
                     AWERSPGLTQNCPLGICGVPTNWGTGSPVTLNVTLVVTKACQINNVPPVNFGSHALVS
                     QFSPQVQSVTVTCTNTEGYTLGFDNGENYQSTWRRMEAGAGQFLRYHLYRPSSNVIWD
                     NATPLSAIGTGAAQIFPYRAVIDPGQPNVPAGTYIDNVLLIISY"
BASE COUNT          264 a          486 c          532 g          292 t
ORIGIN      
        1 caacgcgaga gagccgatct gcatgctgcg attaaggcat tgacggcatc gcctgctggc
       61 ctgggacagg gcgatccgta atcctacccg tccgctgact tcccacaccc ttgtaagcca
      121 aaagctatct ctttcgtcgg aaaaagggtg attccacatt gatatcaccg tttcgcccgc
      181 ttaccctgtg cccactatcg cttcaactgt cggcccgtga ggcccgtcag ttccagttct
      241 acggatggac tattcagcaa ccaataggcc gcagttaccg tagagcagtc ggtatgtacc
      301 tccagcgaat tctcctcccc atcgtggcgt ttgccgttct catcgcccct gctgtccagg
      361 cccaggcggg gcaggtgggc gggcagatcg gcatcagcct ggccatcgtc aagagctgcc
      421 aggtggcgag cgaaacctcc ttcgatacct accgggtcag cagccagggc tgcgaagcct
      481 cggcattcca gctgcaggac gaacgcggcc ggcccatggc cgcgcaaccc tccgggcagg
      541 acgccgtcac ccgcgtggaa agcgccgacg gcgctggctc gcgcgtggtc gtgtactggt
      601 aggcccgctt cagtagctga tgatcagcag cacgttgtcg atgtaggtgc ccgccggcac
      661 gttgggctgg ccggggtcga tgaccgcccg ataggggaaa atctgcgcag cgccggtgcc
      721 gatggcgctc aggggcgtcg cgttgtccca gatgacgttg ctgctggggc ggtacaggtg
      781 atagcgcagg aattggccgg ctcccgcttc catccgtcgc caggtcgact ggtagttctc
      841 accgttgtcg aagcccaggg tgtagccctc ggtgttggtg caggtcaccg tgaccgattg
      901 cacctgcggg ctgaactggc tgacgagcgc gtggctgccg aagttcaccg gcggcacgtt
      961 gttgatctga caggccttgg tgaccaccag ggtgacattc agcgtgaccg gcgagccggt
     1021 gccccagttg gttggtacgc cgcagatgcc gagcgggcag ttctgggtca gcccagggct
     1081 gcgctcccag gcgcagatgt tgatcagacc gagtgtgcag atcgcccatt gccagcgcag
     1141 gttgacgcta gccgtatagg tgccggctgg cacattgggt ccgatgtcgg tgcggaaata
     1201 cagggcgatc gccgtcgcgc tggcgcccag ggtcagtagg ttgacgctgt ccagctggcg
     1261 cggcgtcccc gggggcagcg gctgggtgta gccgatgtcc tgatagatct ggaaagggat
     1321 ctggttgcca ttgccgtcgc gcagcagcag cggtgccggg gtgtttaccg tgacccgcac
     1381 ataggcggcg gtgagcagcg tcagcacgcc ctcgcagccc aggccggcac cagcggcggc
     1441 ctgctggggt tgagtgcgca ggctcaacga gttggtgctg cccagattga ccgccgtggt
     1501 ggcggtgatg caaaccgccc gtgccggcga ggccgccagc agtccgagca gcatcagcag
     1561 agcgagcagg ccgc
//
LOCUS       DATIHC010000676         2991 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21860, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000676 DATIHC010000000
VERSION     DATIHC010000676.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2991)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2991)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2991
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21860"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2990)
                     /locus_tag="VLF16_11255"
     CDS             complement(<1..2990)
                     /locus_tag="VLF16_11255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003298077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="error-prone DNA polymerase"
                     /protein_id="HSX71498.1"
                     /translation="MPRYVELHCLSNFSFQRGASSAQELFERAHRLGYRALAITDECS
                     LAGIVRAWQAAKESDVPLIVGCELRIEAGPKLVLLVENLAGYQRLCQLITLARRRADK
                     GRYRLLREDLQAPLEGLLAIWLPDQQHEDGHWLHALFPQRLWLGVELHRGPDDVERLA
                     ELRALAEQTGIPAVACGDVHMHARGRRALQDCMTAIRHHLTVAEAGQYLFANGERHLR
                     RLDELRELYPPELLEESLRIAERCRFDLDELKYEYPHEVVPKGETPTTWLRHLVEQGA
                     HKRWPDGVTQKAREQLEKELQLIAELEYESYFLTVHDIVAYARSQHILCQGRGSAANS
                     AVCFVLGITELDPLQEGRRLLFERFLSRERNEPPDIDVDFEHERREEVIQYVFRRYGR
                     DRAALTAVVNTYHGAGAIRDVAKALGLPAQQQGDLADCCGRWTDRLPSPERLREAGFD
                     PESPALRRVLALTDALIGFPRHLSQHPGGFVISERPLTELVPVENAAMAERTVIQWDK
                     DDLDEVGLLKVDVLALGMLTALRRCFDLIERYRGQRWTLATLPEEDKATYDMISRADT
                     IGVFQIESRAQMAMLPRLKPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRRNKQEEVTY
                     PSEELKKVFERTLGVPLFQEQVMELAVVAAGYTHGEADDLRRCMAAWKRRGGLEPHQQ
                     RLTEGMLARGYTAEFAARIFEQIKGFGNYGFPESHSASFALLTYASSWLKCHEPAAFT
                     CALINSWPMGFYSPDQLLQDARRHHIEIRPLDVHHSDWDCSLEPGENGQPALRLGLRL
                     IRGLREEQARRLEAVRRLRPFSDIADLCLRADLDDRCRALLADAGALHNLVGHRHLAR
                     WAIAGVERQAPLFADLPAADEVPVDLPRPSLGEEVQTDYATLGTTLGPHPLSLLRDDL
                     RARRCRSSQDLDGLSNGRLVKVAGLVIGRQRPQTASGITFVTLEDEHGMLNVVVRLEL
                     AERQRRVLVGSRLMQVDGHLEQADG"
BASE COUNT          447 a          962 c         1078 g          504 t
ORIGIN      
        1 ccgtcggcct gttccagatg gccgtccacc tgcatcagcc gcgagccgac cagtacgcgg
       61 cgctggcgct cggccagttc caggcggacc actacgttga gcatgccgtg ctcatcctcc
      121 agggtgacga aagtaatgcc gctggcggtc tgtggccgct ggcggccgat gaccaggccg
      181 gcgaccttga ccaggcggcc gttgctgagc ccatccagat cctgagagct gcggcagcgg
      241 cgtgcgcgca ggtcatcacg cagcaggctc agcgggtgcg ggcccagggt ggtgccgagg
      301 gtggcgtagt cggtctgcac ttcctcgccc aggctgggcc gcggcaggtc gacgggcacc
      361 tcgtcggcgg ccggcaggtc ggcgaacagc ggtgcttgac gctccacgcc ggcgattgcc
      421 cagcgcgcca ggtggcggtg gccgaccagg ttgtgcaggg cgcccgcgtc ggcgagcagg
      481 gcgcggcaac ggtcgtccag gtcggcgcgc aggcagaggt cggcgatatc gctgaagggg
      541 cgcaggcggc gcacggcctc caggcgtcgc gcctgttcct cgcgcagccc gcggatcagt
      601 cgcaggccca ggcgtagagc cggttgtccg ttctcgcccg gctccaggct gcagtcccag
      661 tcgctgtggt gcacgtccag cgggcgtatc tcgatgtggt gtcgtcgggc gtcctgcagc
      721 agttgatcgg gactgtagaa gcccatcggc cagctgttga tcagggcaca ggtgaaggcc
      781 gctggttcgt ggcacttgag ccagctgctg gcgtaggtga gcagggcgaa gctggcggag
      841 tgggattccg ggaagccgta gttaccgaag cccttgatct gctcgaagat gcgcgcggcg
      901 aactcggcgg tgtagccgcg cgccagcatg ccctcagtca ggcgctgctg gtgtggttcc
      961 agcccgccgc ggcgcttcca ggcggccatg cagcggcgca ggtcgtcggc ctcgccatgg
     1021 gtgtaaccgg cggcgaccac ggccagctcc atcacctgct cctggaacag cggcacgccc
     1081 agggtgcgct cgaagacctt cttcagttcc tcgctggggt aggtgacttc ttcttgtttg
     1141 ttgcgacgac gcagataggg atggaccatg tcgccctgga tcggacccgg ccgaacgatg
     1201 gccacctcga tcaccaggtc gtagaacttc tcgggtttca gccgcggcag catggccatc
     1261 tgcgcccgcg actcgatctg gaacacgccg atggtgtcgg cccggctgat catgtcgtag
     1321 gtggccttgt cctcctcggg tagcgtcgcc agggtccagc gctggccgcg atagcgttcg
     1381 atcaggtcga agcagcggcg cagagcggtg agcatgccca gggccagcac gtcgaccttg
     1441 agcaggccga cctcgtccag atcgtccttg tcccactgga tcaccgtgcg ctcggccatg
     1501 gccgcattct ccaccggtac cagttcggtc aggggccgct cggaaatgac gaagccgccg
     1561 gggtgttgcg acaggtgccg gggaaaaccg atcagcgcgt cggtcagtgc cagcacccgg
     1621 cgcagtgccg ggctttccgg gtcgaagccg gcctcgcgca ggcgctcggg tgatggcagg
     1681 cgatcggtcc agcggccgca gcagtcggcc aggtcgcctt gctgttgcgc aggcaggccg
     1741 agggccttgg ccacgtcgcg aatggcgccg gcgccgtggt aggtgttgac cacggcggtg
     1801 agggcggcgc ggtcgcgacc gtagcgacgg aacacgtact ggatgacttc ctcgcggcgc
     1861 tcgtgctcga aatccacgtc gatatccggc ggctcgttgc gctcgcgtga cagaaagcgt
     1921 tcgaacagca gtcggcggcc ttcctgtaag gggtcgagct cggtgatgcc gagcacgaaa
     1981 cacaccgccg agttggccgc agaaccgcgg ccctggcaaa ggatgtgctg gctacgggcg
     2041 taggccacga tgtcgtggac ggtgaggaag tagctctcgt attccagttc ggcgatcagc
     2101 tgcagctcct tctccagctg ttcgcgggcc ttctgtgtca cgccatctgg ccagcgtttg
     2161 tgtgcgcctt gctcgaccag gtggcgcagc caggtggtgg gcgtctcgcc cttgggcacg
     2221 acttcatggg gatattcgta cttcagctca tcgaggtcga agcggcagcg ctcggcgatg
     2281 cgcaggctct cctccagcag ctcgggcggg tacagctcgc gcagctcgtc cagacggcgc
     2341 aggtggcgtt cgccgttggc gaacaggtac tggccggcct cggccacggt caggtgatgg
     2401 cggatggcgg tcatgcagtc ctgcagggca cgacgaccgc gggcatgcat gtgcacatcg
     2461 ccgcaggcca cggcggggat gccggtttgt tcggccagtg cccgtagctc ggccaggcgc
     2521 tcgacatcgt ccgggccgcg gtgcagctcc acgcccagcc acagccgctg gggaaacagc
     2581 gcgtgcagcc agtggccgtc ctcgtgttgc tggtcgggca gccagatcgc cagcaggcct
     2641 tcgagcggtg cctgcaggtc ctcgcgcagc agacggtagc gacccttgtc ggcgcgccga
     2701 cgggcgaggg tgatcagctg gcacaggcgc tggtaacccg ccaagttctc caccagcagg
     2761 accagcttgg ggccggcctc gatgcgcagc tcgcagccga cgatcagggg tacgtcgctt
     2821 tccttggccg cctgccaggc acgcacgatg ccggccaggc tgcactcgtc ggtgatggcc
     2881 agggcgcgat agcccaggcg atgggcgcgc tcgaacagtt cctgggcgct ggaagcgccg
     2941 cgctggaagc tgaagttcga caggcagtgc agttccacgt agcgcggcag c
//
LOCUS       DATIHC010000677         2750 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11175, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000677 DATIHC010000000
VERSION     DATIHC010000677.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2750
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11175"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..136)
                     /locus_tag="VLF16_11260"
     CDS             complement(<1..136)
                     /locus_tag="VLF16_11260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015474833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HSX71499.1"
                     /translation="MHISPAELEARLRLHSLPELGPRRFRRLLEAFGHASAALSAPAA
                     A"
     gene            complement(199..1239)
                     /locus_tag="VLF16_11265"
     CDS             complement(199..1239)
                     /locus_tag="VLF16_11265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HSX71500.1"
                     /translation="MRKSLLALLLVAAGGLAQAGLVQAEVQLKDGHPDRYTVVKGDTL
                     WDISGKFLSQPWKWPELWHANPQIENPHLIYPGDTLNLVYIDGQPRLMLNRGASRGTI
                     KLSPKVRSTPMAEAIPTIPLEAINSFLLSNRIVNSAEEFNGRPYVVAGNAERVVSGAG
                     DRIYARGQFDEGQSIYGIFRQGKVYTDPETEEFLGINADDIGGGEVVAEEGDIATLNL
                     TRSTQEVRLGDRLFPTEERAVNSTFMPSEPETEVNGVILDVPRGVSRVGQYDVVTINK
                     GKIDGLSEGNVLAIYKTGETVRDRITGESVKIPDERSGLLMVFRTYEKLSYGLVLYAT
                     RDLALMDKVKNP"
     gene            1373..1879
                     /gene="def"
                     /locus_tag="VLF16_11270"
     CDS             1373..1879
                     /gene="def"
                     /locus_tag="VLF16_11270"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HSX71501.1"
                     /translation="MAILNILEFPDPRLRTIAKPVTVFDAALSQLIDDMFETMYAAPG
                     IGLAATQINVHKRVVVMDLSEDKSEPRVFINPEFESLTEEMDQYQEGCLSVPGFYENV
                     DRPQKVRIKAQDRDGSHYELVAEGLLAVCIQHECDHLNGKLFVDYLSQLKRDRIKKKL
                     EKQHRQQA"
     gene            1941..>2750
                     /gene="fmt"
                     /locus_tag="VLF16_11275"
     CDS             1941..>2750
                     /gene="fmt"
                     /locus_tag="VLF16_11275"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013713229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HSX71502.1"
                     /translation="MRIVFAGTPEFAAQHLQALLDAGKQVVAVYTQPDRPAGRGQKLM
                     PSPVKQLALQHAIPVYQPQTLRDPAAQAELDALQPDLMVVVAYGLILPQVVLDSPRLG
                     CINSHASLLPRWRGAAPIQRAVQAGDAESGVTVMQMEAGLDTGPMLLKVSTAIGAEDT
                     GGSLHDRLAALGSQAVVEAVSKLAAGELRGEVQDDSLATYAHKLNKDEARLDWSRPAE
                     ELERLVRAFNPWPICHSTLNGEPLKVLAAQLGEGGGAPGTVLAVDKSGLTVA"
BASE COUNT          495 a          880 c          877 g          498 t
ORIGIN      
        1 acgcggcggc gggtgcgctg agggcggcgg aggcatggcc gaaggcttcc agcaggcggc
       61 ggaagcgccg cggcccgagc tccggcaggc tgtgcaggcg cagtcgcgcc tccagttcgg
      121 cgggggagat gtgcatggcg atcgtccttg atcgtggccg gaaagcagaa cccccgcacg
      181 gggcgggggt tcggggtgtt acgggttctt caccttgtcc atcaacgcca ggtcgcgggt
      241 ggcgtagagc accagaccat agctgagctt ctcgtaggtg cggaacacca tcagcaggcc
      301 ggagcgctcg tccgggatct tcaccgactc gccggtgatg cgatcacgca cagtctcgcc
      361 ggtcttgtag atagccagta cgttgccttc gctgaggcca tcgatcttgc ccttgttgat
      421 ggtcaccacg tcgtactgac cgacccggct cacaccgcgc ggcacgtcca gaatgacacc
      481 gtttacctcg gtctccggct cgctgggcat gaaggtggag ttgacggcac gttcttcggt
      541 ggggaacagg cggtcgccaa ggcgcacttc ctgggtcgag cgggtcaggt tgagcgtggc
      601 gatgtcgcct tcttcagcca caacctctcc gccaccgata tcgtcggcat tgatacccag
      661 aaactcctcg gtctcggggt ctgtgtagac cttgccctgg cggaaaatgc cgtaaatgga
      721 ctggccttca tcgaattggc cacgcgcata tatgcggtcc ccggcaccgc tgacgactcg
      781 ctcggcgtta ccagcgacca cgtacggacg cccattaaac tcttcggcac tattcacgat
      841 ccgattgctc agcaggaaac tgttgatggc ttccagcgga atggtcggaa tggcttcggc
      901 catcggcgtg ctgcggacct tgggcgacag cttgatggtg ccgcgcgagg cgccgcggtt
      961 gagcatcaga cgcggctggc cgtcgatgta gaccaggtta agggtgtcgc ccgggtagat
     1021 caggtgcggg ttttcgatct gcgggttggc gtgccacagc tcgggccact tccacggctg
     1081 gctgaggaac ttgccagaga tgtcccagag ggtatcgccc ttgaccaccg tataacggtc
     1141 cggatgacca tccttgagct gcacttcggc ctggaccagt ccggcctggg ccagaccgcc
     1201 cgcggcgacc agcagcaggg cgagtagtga tttcctcata cggtgaatcc ctttattatg
     1261 tggctggcgc ctgaaggccg cggaaacagc ggcttttgag ccgtttttca aagctgctca
     1321 tcatcttagc agcggttttt tactttattc cacaagtgca tcacaaacag ccatggccat
     1381 tctaaacatc ctcgaattcc ccgatccgcg cctgcgcacc atcgccaagc cggtgaccgt
     1441 tttcgacgcc gcactctcgc agctgatcga tgacatgttc gagaccatgt acgccgcgcc
     1501 cggcatcggt ctggccgcca cgcagatcaa tgttcacaag cgggtggtgg tgatggacct
     1561 gtccgaggac aagtccgagc cgcgggtatt catcaatccc gagttcgagt cgctgaccga
     1621 ggagatggac cagtaccagg aaggctgcct ctcggtaccc ggcttctacg agaacgtcga
     1681 ccgcccgcag aaggtgcgga tcaaggccca ggaccgcgac ggcagccatt acgagctggt
     1741 cgccgagggc ctgctcgccg tgtgcatcca gcacgagtgc gatcacctca acggcaagct
     1801 gtttgtcgat tacctgtcgc agctcaagcg cgaccggatc aagaagaagc tggaaaaaca
     1861 gcaccgccag caggcttgat cctctgactc ccaaaggctt gctccggcaa gcctttttct
     1921 tttcatgcag tgagtgatcc atgcgtatcg ttttcgccgg caccccggaa ttcgccgccc
     1981 agcatttgca ggccctgctc gatgcgggca agcaggtagt cgccgtctac acacagccgg
     2041 accgcccggc cggccgcggg cagaagctga tgcccagccc ggtgaagcag ctggccctgc
     2101 agcacgctat cccggtgtac cagccgcaga ccttgcgcga cccggcagcc caggccgaac
     2161 tggacgcgct ccagccagac ctgatggtgg tggtcgccta cggcctgatc ctgccgcaag
     2221 tggtgctgga cagcccacgt ctgggctgca tcaacagcca cgcctcgctg ctgccgcgct
     2281 ggcgcggcgc cgcgccgatc cagcgcgcgg tgcaggccgg cgatgccgag tccggcgtca
     2341 ccgtcatgca gatggaggcg ggtctggaca ccggccccat gctgctcaag gtgagcaccg
     2401 ccatcggtgc cgaagacacg ggtggcagcc tgcatgatcg cctggccgcg ctgggctccc
     2461 aggccgtggt cgaagccgta agcaaactgg ccgccggcga gctacgtggc gaagtgcagg
     2521 acgacagtct ggccacctac gcccacaagc tgaacaagga cgaggcgcgc ctcgactgga
     2581 gtcgcccggc cgaggagctg gagcgcctgg tgcgcgcctt caacccctgg ccgatctgcc
     2641 acagcacgct gaatggcgaa ccgctcaagg tgctggccgc gcaactgggc gagggcggcg
     2701 gcgctccagg taccgtgctg gccgtcgaca agagtggcct gaccgtcgcc
//
LOCUS       DATIHC010000678         2526 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_9044, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000678 DATIHC010000000
VERSION     DATIHC010000678.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2526
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9044"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..194
                     /locus_tag="VLF16_11280"
     CDS             <1..194
                     /locus_tag="VLF16_11280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016495463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HSX71503.1"
                     /translation="FFNRLFTGADLSLRLNDFHEEAFAAFEAGDAKGARHAMEQDLIY
                     FARFLLNLLELEGRQARGR"
     gene            407..1801
                     /locus_tag="VLF16_11285"
     CDS             407..1801
                     /locus_tag="VLF16_11285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012018727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pectin acetylesterase-family hydrolase"
                     /protein_id="HSX71504.1"
                     /translation="MPMKTARLACCVSAAALITATPAHAELGDYGFWKTLLNLSAPPP
                     ADNPVTPEQGLGPYPLLNNPGGFNAGFKPGNYYGWQAVQLAPQTGAVCGNGSPYKFFV
                     NRVPNTSNTIIYLEGGGACWDYASCTGQTGIRGARNPDGIPDDYMSLLNPGASLVSPL
                     VVRLHPWTRTKTQNWNMVYVPYCTGDIYTGDRVAVYDDPQGQQPPLVWHHNGLRNTRA
                     VVAWLKNNLPRPAQLLTTGCSAGGAGSLTNYASIRQDIAPTRGFLLDDSGPVFSAPPG
                     SDIGQYPSRPLQDHIRAVWGLNDGIVPYLQSRLPGLDAADLGSLYTALSTNLPGDRLG
                     HTHFWQDLNYSSYSYERFHPDIVNAPDAATKEALIHAKWAVDTGRLRDQLSNLSNFGG
                     YFPQYRAVNESHCTSIIEFANSDIQEQNLQLEHFVDNLLNGSGAVLSASESSDAADKA
                     KPFNLLYYILDQLL"
     gene            complement(1950..>2526)
                     /locus_tag="VLF16_11290"
     CDS             complement(1950..>2526)
                     /locus_tag="VLF16_11290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71505.1"
                     /translation="WLGLAGSGRTPADAPAPSAPLANAGAANGRPAPLDPAARQALLN
                     DPAVQGYRARLQFGADYQSFIKTSADLDEAQRRQRAAALAKEIDRREAAGELALSEAL
                     LLQIGLAQAEGGDEAAQKARADALVARYQALSQAREARNRTSDARFSQYKSDEKRIVE
                     EVMALDSIPDGLSRDQYLRQRLQEAREQVYQ"
BASE COUNT          409 a          913 c          808 g          396 t
ORIGIN      
        1 cgttcttcaa tcggctgttc accggcgccg acctctcgct gcggctcaac gacttccacg
       61 aggaagcctt cgccgccttc gaggccgggg acgccaaggg cgcgcgccac gccatggagc
      121 aggacctgat ctacttcgcc cgcttcctcc tcaacctgct ggagctggaa ggccggcagg
      181 cgcgcggccg ctgaaaagcg gtgagccgat ggcgaccgat cgcggcgcta tcggctcagt
      241 tagctccttt tggcagcgct atcccgaatc aatataaggc tggcttggtc ctcgtcggcc
      301 gcctgtacta gcgtccctga tgtgcctggc cccgtgcggg accgcaccgg gcatggacgt
      361 ctccggccgt ggccccatgc tccgagaaga acaacaagac gaggacatgc cgatgaagac
      421 tgcccggttg gcctgctgcg tcagcgcggc ggcgttgatc accgccaccc ctgcccacgc
      481 cgagctcggt gactacggtt tctggaagac cctgctcaac ctcagcgcgc cgccgccggc
      541 ggacaacccg gtcacgcccg aacagggcct tggcccttat ccgctgctga acaatccggg
      601 tggtttcaac gcgggcttca agcccggcaa ctactacggc tggcaggccg tccagctggc
      661 gccgcagacc ggcgcggtgt gcggcaacgg ctcgccctac aagttcttcg tcaaccgcgt
      721 gccgaacacc agcaacacca tcatctacct ggaaggcggc ggcgcctgct gggactacgc
      781 cagctgcacc gggcagaccg gcatccgcgg ggcgcgcaac ccggacggca ttcccgacga
      841 ctacatgagc ctgctcaacc ccggcgccag cctggtcagc ccgctggtgg tgcgcctgca
      901 cccctggacg cggaccaaga cgcagaactg gaacatggtc tacgtgccct attgcaccgg
      961 cgacatctac accggcgacc gggtcgcggt gtacgacgac ccgcagggtc agcaaccgcc
     1021 gctggtgtgg caccacaacg gcctgcgcaa cacccgcgcc gtggtcgcct ggttgaagaa
     1081 caacctgccg cgcccggcgc agctgctcac caccggttgc agcgccggcg gcgccggcag
     1141 cctgaccaac tacgcgagca tccgccagga catcgccccg acgcgcggct ttctgctcga
     1201 cgattccggc ccggtgttca gcgcgccgcc cggcagcgat atcggccagt acccgtcgcg
     1261 gccgctgcag gaccacatcc gcgcggtctg ggggctcaac gacggcatcg tgccctacct
     1321 gcagagccgt ctgccggggc tggacgcggc cgatctcggc agcctgtaca cggcgctgtc
     1381 gaccaacctg ccgggcgacc gcctgggcca cacgcacttc tggcaggatc tcaactactc
     1441 gtcctactcc tacgaacgct tccatccgga catcgtcaac gcccccgacg cggcgaccaa
     1501 ggaggcgctg atccatgcca agtgggcggt ggacaccggc cgcctgcgcg accagctgag
     1561 caacctgagc aatttcggcg gctacttccc gcagtaccgg gcggtaaacg agagccactg
     1621 caccagcatc atcgagttcg ccaactcgga catccaggag cagaacctgc agctggagca
     1681 cttcgtcgac aacctgctga acggcagcgg cgcagtgctc tcagcctcgg aaagcagcga
     1741 tgcggcggac aaggccaagc cgttcaacct gctgtactac atcctcgacc agctgctctg
     1801 agagatctgc tgcacgccgg ccaaagggct gaggaggcgg tctgggacgc ggcgtctcgg
     1861 aatgctcatt tgcttgcgtg actgcgcttc ctcggcccct tccgccaccc tgtgtctcga
     1921 gctcgcgaga ccttgatcag actctctggc tactggtaca cctgctcccg cgcctcctgc
     1981 aggcgctggc gcaggtactg gtcgcggctg agaccgtcgg gaatgctgtc cagcgccatc
     2041 acctcctcga cgatgcgctt ctcgtcggac ttgtactgcg agaagcgcgc atcggaggtc
     2101 ctgttacgcg cttcgcgcgc ctggctgagc gcctggtagc gggcgaccag ggcgtcggcc
     2161 cgggccttct gcgccgcctc gtcgccacct tcggcctggg ccaggccgat ctgcagcaac
     2221 aacgcctcgc tcagcgccag ttcgccggcc gcctcgcgcc ggtcgatctc cttggccagc
     2281 gctgccgcgc gctggcggcg ctgcgcctcg tcgaggtcgg cggaggtctt gatgaagctc
     2341 tggtagtcgg cgccgaactg cagacgggcc cggtagccct gcacggcggg atcgttcagc
     2401 agcgcctgac gggcggcggg gtcgagcgga gcggggcggc cattcgcggc gccggcgttt
     2461 gccaggggag ccgatggcgc aggcgcatcg gcgggcgtgc gcccggagcc ggccagaccg
     2521 agccac
//
LOCUS       DATIHC010000679         2275 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_32344, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000679 DATIHC010000000
VERSION     DATIHC010000679.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2275)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2275)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2275
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32344"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            53..682
                     /locus_tag="VLF16_11295"
     CDS             53..682
                     /locus_tag="VLF16_11295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017938076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HSX71506.1"
                     /translation="MRNLILSAAFAGLSLLGLGAQAADIEAGRQYVELSNPVPVSQPG
                     KIEVVELFWYGCPHCYQFEPTLNPWVEKLPEDVNFVRIPALFGGIWDVHGQLFITLES
                     MGVEQQVHEAVFNAIHREKRKLATPEEMAEFLAGQGVDKGKFLSTFNSFAVKGQMAKA
                     KKLAVAYQITGVPVLIVNGKYRFDVSSSGGEQETLQVADHLIQQERSAN"
     gene            693..1538
                     /locus_tag="VLF16_11300"
     CDS             693..1538
                     /locus_tag="VLF16_11300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014854449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HSX71507.1"
                     /translation="MLRRWNSGRSASLRQAQVNGLCADSGGGCGDGRLRLLSFNIQVG
                     ISTGRYHHYLTRSWQHLLPHPGRAGNLQRIGALLGDYDLVALQEVDGGSLRSGYVNQV
                     ERLAELGDFPYWYQQLNRNLGRMAQHSNGVLSRLRPDRLEDHPLPGPPGRGAILLRFG
                     EGPDALVVLNLHLALGARTRTRQLAYVRELIEGHRHVVLMGDMNTHAVELLQHSPLRE
                     LGLVAPQIEATFPSWRPQRCLDHILLSPELVLERVEVLSQPISDHLPVAVDIRLPTGN
                     NLPML"
     gene            1563..>2275
                     /locus_tag="VLF16_11305"
     CDS             1563..>2275
                     /locus_tag="VLF16_11305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014335822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HSX71508.1"
                     /translation="MTDEAQRWKAKYLESLEQQEREEQRWNERLDLLRRGLVRSSLAA
                     EGSDKAVDQCMQELRELIRGEKMDAGLSALIPRLEKAVLDSEQRRQQRVEQNIAGLTG
                     LAQQLLALEPPREVRKALKQFAKRIDERAGQPRELPALLAELSSLQGKTLSVLGSEPV
                     ERPGLLQRLFGGGRDEAPVEAQAVQPQAQPSPSVAMDAEDDEDLPTPTPTPTPTPTPT
                     PTPTPTPTPTSTPMPQPSPV"
BASE COUNT          383 a          796 c          756 g          340 t
ORIGIN      
        1 ggtcgaaccg agccgccgcg ctcgcgcggt ccccatcgtc aaggagttct gcatgcgtaa
       61 cctgattctc agcgccgcct tcgccggcct cagtctgctg ggcctgggcg cccaggccgc
      121 cgacatcgaa gccggtcgcc agtatgtcga gctgagcaac ccggtaccgg tctcgcagcc
      181 gggcaagatc gaggtggtcg agctgttttg gtacggctgc ccgcactgct accagttcga
      241 gccgaccctc aacccctggg tcgagaagct gccggaagac gtcaatttcg tgcgcatccc
      301 cgccctgttc ggcggcatct gggacgtgca tggtcagctg ttcatcaccc tggaatccat
      361 gggcgtagag cagcaggtac acgaggcagt gttcaacgcc atccaccgcg agaagcgcaa
      421 gctggccacg ccggaagaga tggccgagtt cctcgccggc cagggcgtgg acaagggcaa
      481 gttcctcagc accttcaact ccttcgccgt gaagggccag atggccaagg ccaagaagct
      541 ggcggtggcc taccagatca ccggcgtgcc ggtgctgatc gtcaacggca agtaccgctt
      601 cgacgtgagc tcgtccggtg gcgagcagga aaccctgcag gtggccgacc acctgatcca
      661 gcaagagcgt tccgccaact gagtgaaccg ccatgttgcg ccgctggaat tccgggcgtt
      721 ctgctagcct gcgccaggcg caggtcaacg gcctttgcgc ggattccggc ggcggctgtg
      781 gcgacggccg tctgcgcctg ctcagcttca acatccaggt cggcatcagc accggccgct
      841 accatcacta cctgacccgc agctggcagc acctgctgcc gcaccccggt cgcgccggca
      901 acctgcagcg gatcggcgcc ctgctcggcg actacgacct ggtcgcgctg caggaggtgg
      961 acggcggcag cctgcgctcg ggctacgtca atcaggtcga gcgcctggcc gagctgggcg
     1021 acttccccta ctggtaccag caactcaacc gcaatctcgg gcgcatggcg cagcacagca
     1081 acggggtgct cagccggctg cgcccggacc gcctcgagga ccatccgctg ccaggcccgc
     1141 ccggccgcgg ggcgatcctg ctgcgcttcg gcgaggggcc ggacgccctg gtggtgctca
     1201 acctgcacct ggcgctcggc gcccgtaccc gcacgcgcca gctggcctat gtgcgcgagc
     1261 tgatcgaggg ccatcgccac gtggtgctga tgggcgacat gaacacccat gccgtcgagc
     1321 tgctgcagca ttcgccgctg cgcgagctgg gcctggtggc gccgcagatc gaggcgacct
     1381 tccccagctg gcggccgcag cgctgtctcg accacattct gctcagcccc gaactggtgc
     1441 tggagcgcgt cgaggtgctg agccagccga tttccgatca cctgccggtg gcggtggata
     1501 tccgcctgcc gacgggcaac aacctgccta tgctgtagtg gccctgccac tggatcgtca
     1561 ccatgaccga tgaagcccag cgctggaaag ccaagtacct ggagagcctc gagcagcagg
     1621 agcgcgagga gcaacgctgg aacgagcgtc tcgacctgct gcgccgcggc ctggtgcgca
     1681 gttcgctggc cgccgaaggc agcgacaagg cggtggacca gtgcatgcag gagctgcgcg
     1741 agctgatccg cggcgagaag atggatgccg gcctctccgc gctgattccg cgcctggaga
     1801 aggcggtgct ggactctgag caacgccgcc agcagcgtgt cgagcagaac atagccggcc
     1861 taaccggcct ggctcagcaa ctgctggccc tggagccgcc gcgggaagtg cgcaaggcgc
     1921 tcaagcaatt cgccaagcgc atcgacgaac gtgccggtca gccccgcgag ttgccggcgc
     1981 tgctggccga actgagcagc ctgcagggca agaccctgag cgtgctcggc agcgagccgg
     2041 tggagcgccc cggcctgctg cagcgcctgt tcggcggcgg ccgcgatgag gcgcccgtcg
     2101 aggctcaggc cgttcagccg caggcacagc catcaccctc cgttgccatg gatgccgaag
     2161 acgacgagga tctgccgacg ccgacgccga cgccgacgcc gacgccgacg ccgacgccga
     2221 cgccgacgcc gacgccgacg ccgacttcga ctccgatgcc gcagccatct ccggt
//
LOCUS       DATIHC010000680         1557 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_24214, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000680 DATIHC010000000
VERSION     DATIHC010000680.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1557
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24214"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..372
                     /locus_tag="VLF16_11310"
     CDS             <1..372
                     /locus_tag="VLF16_11310"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSX71509.1"
                     /translation="GLRKAEENSWPIYVAVDGGDIVGSAEAYPESFCRDDGDSRIAIL
                     GMQVKLGHRRRGYGEALLSAVIAHCKNLDFTAIDLSVVKSNEAARNLYRKAGFVWVAD
                     APKFFLPNGLEDQSEIMRLKL"
     gene            461..862
                     /locus_tag="VLF16_11315"
     CDS             461..862
                     /locus_tag="VLF16_11315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010484440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease inhibitor I42 family protein"
                     /protein_id="HSX71510.1"
                     /translation="MNHAHRLLLPCSLALLAACSSQPNTSVSVEEKQLGDCPMQLHAG
                     QTLNVALPSNPTTGFRWEVVEAAPGILRSLGPEVYMTPEDAGLVGAGGQSTWRYQAYQ
                     TGEGRLLMQYRRPWEADVAPAKTIDCAISVR"
     gene            953..>1557
                     /locus_tag="VLF16_11320"
     CDS             953..>1557
                     /locus_tag="VLF16_11320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012018046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysoplasmalogenase"
                     /protein_id="HSX71511.1"
                     /translation="MRPLLLLVALAGVALFLLGLHLELKSLTLLGKPLPVICLLLWLR
                     EAPAGAYRRWIVIGLVFSLLGDMLLEWPADLFVFGLGAFLLAHLAYLVAYLGDTRRLA
                     PLDLLLAALAAGGMFFVLSRSGLGPLLVPVALYSLAIGAMLWRALARVGVVASRSAWL
                     AAAGAALFVLSDSLIGINRFVAPFEGARYAIILSYWLGQLG"
BASE COUNT          254 a          511 c          497 g          295 t
ORIGIN      
        1 ggcttgagga aggccgagga gaacagttgg cccatctatg tggctgttga tggtggagat
       61 atcgtcggct cggcagaggc ctatccagag agcttttgtc gggatgacgg ggactcgcgg
      121 atagccatcc tgggaatgca ggtcaagcta gggcaccgtc gtcgtggcta cggagaggcc
      181 ctgctatctg cagtaatagc tcactgcaaa aacctcgatt tcactgcaat cgacctctcc
      241 gtagtgaagt cgaacgaagc agctagaaat ctatacagga aagccggctt cgtatgggtt
      301 gcagacgctc cgaaattctt cctccctaac gggctggaag accaatcaga aataatgcgc
      361 ctgaagctat agcccagcga ctgttgaggc tgcggctgca tatcgcttac tcgataccac
      421 ccgctatgct gtgcaggttt tcgatcgaca ggagtccgcc atgaaccatg cccaccgtct
      481 gctgctgccc tgcagtctcg ccctcctggc cgcctgctct tcgcagccga acaccagcgt
      541 gagcgtggag gagaagcagc tgggcgattg cccgatgcag ttgcacgccg gccagaccct
      601 caacgtcgca ctgccgagca accccaccac cggctttcgc tgggaagtgg tggaggccgc
      661 cccgggcata ctgcgcagcc tggggcccga ggtctacatg acgcccgaag acgccggcct
      721 ggtcggcgca ggcggccagt cgacctggcg ctaccaggcc taccagaccg gcgagggccg
      781 cctgttgatg caataccgcc ggccctggga agcggacgta gcgccggcca agaccatcga
      841 ctgcgcgatc agcgtgcgct gacgcgataa accaccccgg ctggcacgga ccgcactggc
      901 cgtttgccgg cacggcggca ataatgggcg caaacaacaa gagaagcccg ccatgcgtcc
      961 attgctgctg ctcgtcgccc tcgccggcgt cgccctgttc ctgctcggcc tgcacctcga
     1021 actcaaatca ctgacgctgc tcggcaagcc gctgccggtg atctgcctgc tgctgtggtt
     1081 gcgcgaggcg cccgccggag cctatcggcg ctggatcgtc atcggcctgg ttttttccct
     1141 gctcggcgac atgctgctgg aatggccggc cgatctgttc gtcttcggcc tgggcgcgtt
     1201 cctgctggcc cacctcgcct acctggtggc atatctgggc gacacacggc gcctggcgcc
     1261 gctggatttg ctgcttgccg cgctggcagc cggtggcatg ttcttcgtat tgagccgctc
     1321 cgggctgggg ccgctgctgg tgccggtggc gctgtacagc ctggccatcg gcgccatgct
     1381 ctggcgggcc ctggcgcggg tcggcgtggt ggcgagccgc tccgcctggc tggcggccgc
     1441 cggcgcggcg ctgttcgtgc tgtcggacag cctgatcggc atcaaccgct tcgtcgcccc
     1501 cttcgagggc gcgcgctacg ccatcatcct cagctactgg ctgggccagc tcggcat
//
LOCUS       DATIHC010000681         1523 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_32349, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000681 DATIHC010000000
VERSION     DATIHC010000681.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32349"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..426)
                     /locus_tag="VLF16_11325"
     CDS             complement(<1..426)
                     /locus_tag="VLF16_11325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HSX71512.1"
                     /translation="MQLIDIGVNLTHPSLAREREAILERARAAGVCQMVLTGTSLEES
                     EKALAFCRELDEGGAQLFSTAGVHPHDADQWSADSAHQLRALLGEAPVRAVGECGLDF
                     NRDLSPRTQQEKALEEQLELAVELQMPVFLHEREAGERLP"
     gene            655..>1523
                     /locus_tag="VLF16_11330"
     CDS             655..>1523
                     /locus_tag="VLF16_11330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003101674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HSX71513.1"
                     /translation="MTRALLLLLCLLATLPAQARLSALGGNLPQAGSQRDLAEIRKSG
                     ELRVLVNQSRDSSGEIKGQAIGIEYQRLRAFGQYLNRNARDGRELRLKIIPKPKDQLV
                     AALQKGQGDLVAPGELLEAHPGLGISASTAIRRDVALVVVGNRGNRHYRRLEDMSGRS
                     LTLPVGSAVRDALRDVNQRLAQRGKPPIVVEWADPSLAVEDVLEMVQAGIYPWTAVEL
                     PIAERWQKVMPRLRIERHLVVGEEGDMSWFVRRGSPMLRASIDRFLDGYRTPGDQDSA
                     FQRIYRRSYKVRNP"
BASE COUNT          245 a          509 c          511 g          258 t
ORIGIN      
        1 ggggagccgc tcgccggctt cgcgctcgtg gagaaacacc ggcatctgca gttcgacggc
       61 cagctccagc tgttcttcca gggccttctc ctgctgcgtg cgcggcgaca agtcgcgatt
      121 gaagtccagc ccgcactcgc ccactgcacg taccggtgct tcacccagaa gggcgcgtag
      181 ctgatgggcg ctgtctgcgc tccattgatc ggcgtcgtga ggatgtacac cggccgtgct
      241 gaacagctgt gcgccgccct cgtccagttc acggcagaac gccagtgctt tctcgctctc
      301 ctctaggctt gtgccggtca ggaccatctg gcagacgccg gccgcgcggg cccgttcgag
      361 tatcgcctca cgctcccgcg cgaggctggg atgggtcaga ttgacgccga tgtcgatgag
      421 ttgcatggtg ctacctcaaa gccgagcggg gcagcataac agagcctgcc ttcgcgctat
      481 aaaacaagaa ataacaggga gttaaacatg cttgttgatg cttcccgtca gctcgggctg
      541 gcgcgttgac ggccgctgtg ccaacctccg cgcccctcgc cacggaacca tccgtcggcg
      601 ggctgctctc agacgaccgg gctcatcctt gacccggttc cccccggagg cccgatgacg
      661 cgagcgctgc tgctcctgct ctgcttgctg gcgacgctgc cggctcaggc gcgcctgagc
      721 gccctgggcg gcaacctgcc acaggccggc agtcagcgcg acctggcgga gatccgcaag
      781 agcggcgagc tgcgcgtgct ggtcaaccag agccgcgaca gctccggcga gatcaagggc
      841 caagccatcg gcatcgaata ccagcgcctg cgcgccttcg gccagtacct caaccgcaac
      901 gcccgcgatg ggcgcgagtt gcgcctgaag atcatcccca aacccaagga ccaactggtc
      961 gccgcgttgc agaagggcca gggcgatctg gtcgcgcccg gtgagctgct cgaggcccat
     1021 ccggggttgg gcatcagtgc cagcacggcg attcgccgcg acgtggcgct ggtggtggtc
     1081 ggcaaccgcg gcaatcgcca ctaccgccgt ctggaggaca tgtccgggcg cagcctgacg
     1141 ttgccggtgg gcagcgccgt gcgcgatgcg ctgcgcgacg tcaatcagcg cctggcgcag
     1201 cgcggcaagc cgccgatcgt ggtggagtgg gccgatccca gcctcgcggt cgaggatgtg
     1261 ctggaaatgg tgcaggcggg catctatccc tggacggccg tggagttgcc gatcgccgag
     1321 cgctggcaga aggtgatgcc gcggctgcgc atcgagcgcc acctggtggt gggcgaggag
     1381 ggcgacatga gctggttcgt gcgccgtgga tcgcccatgc tgcgtgccag catcgaccgc
     1441 ttcctcgatg gctatcgaac gcccggcgac caggactcgg cgttccagcg catctatcgg
     1501 cgttcctaca aggtgcgtaa tcc
//
LOCUS       DATIHC010000682         3281 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29943, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000682 DATIHC010000000
VERSION     DATIHC010000682.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3281)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3281)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3281
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29943"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1137)
                     /locus_tag="VLF16_11335"
     CDS             complement(<1..1137)
                     /locus_tag="VLF16_11335"
                     /inference="COORDINATES: protein motif:HMM:TIGR04214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CSLREA domain-containing protein"
                     /protein_id="HSX71514.1"
                     /translation="MRRTTPSPVGNAFHLPLAGILLLAGPMAWANTPLQVTTTADSFD
                     GLCDSHCSLRDAVQAANLQTGADFIMLAPGDYVLSLPPAPDEQGVARDEDDNRNGDLD
                     VRDALTIRGYGERSRILGGGSDRLLEVMAGATLDLLRLSLEGGDTADNGGAVENHGDL
                     LLHEVRVRNNRAVTAPGPLPASEGYRHGQGGGIANYGQLDVHHSIFEGNHAEGVYWDD
                     NLGRGGAIFNQGQLLVRDSEFRDNRVSDQGDRGAGGGLYNAGTASVARSLFVDNSGDE
                     MGLGGAIANESEGMLVLSNSTISSNTSGGLSNGYPSSTPLAVLPVMRLVHVSVVGNQG
                     FGLMNWGEVLLRNSLIVANRDPVAGQVVNCRNLGQSRYRAIGLLL"
     gene            complement(1373..3101)
                     /locus_tag="VLF16_11340"
                     /pseudo
     CDS             complement(1373..3101)
                     /locus_tag="VLF16_11340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251530.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
BASE COUNT          508 a         1062 c         1156 g          555 t
ORIGIN      
        1 cagcagcagg ccgatggccc ggtagcgact ctggccaagg ttgcggcagt tgaccacctg
       61 ccctgcgacg ggatcacggt tggccacgat caggctgttt ctcagcagca cctcgcccca
      121 gttcatcagg ccgaagccct gattgccgac caccgagacg tgcaccagcc gcatcaccgg
      181 cagcaccgcc agcggcgtgc tcgatggata gccgttgctc aggccgccac tggtattact
      241 gctgatcgtg ctattgctca gcaccagcat gccctcgctt tcgttggcga tggcgccgcc
      301 gagacccatc tcgtcgccgc tgttgtcgac gaacaggctg cgggcgacgc tggccgtgcc
      361 agcgttgtac aagccgccgc ccgcgccccg atcaccctga tcagaaaccc ggttgtcgcg
      421 gaattcgctg tcgcgcacca ggagctgacc ctgattgaag atggcgccac cgcggccgag
      481 gttgtcgtcc cagtacacgc cctcggcgtg attgccctcg aagatcgagt ggtgaacgtc
      541 caactggccg tagttggcga tgcctccgcc ctggccatgc cggtaaccct cgctggccgg
      601 tagcgggcct ggcgcggtga ccgcgcggtt gttgcgcacc cgcacctcgt gcagcagcaa
      661 gtcgccgtgg ttctccaccg caccgccgtt gtccgcggta tcgccgccct cgaggctgag
      721 gcgcagcagg tccaaggtgg cgcccgccat cacctccagc agtcgatcgg agccgccgcc
      781 gagtatccgg ctgcgctcgc cgtagccacg aatggtcagg gcgtcgcgaa catccaggtc
      841 accgttgcga ttgtcgtcct cgtcacgcgc taccccctgc tcatccggcg cgggtgggag
      901 gctgagcacg tagtcgccgg gagccagcat gatgaaatcg gcgcccgtct gcaggttggc
      961 ggcctgcacc gcatcgcgca gcgagcagtg gctgtcgcac aggccatcga aactgtccgc
     1021 cgtggtggtg acctgcaagg gtgtgttggc ccaagccatg ggccccgcca gcagcaggat
     1081 gccggccagc ggtaaatgga aggcgttgcc tacaggagaa ggggtggtgc ggcgcatgtc
     1141 ggcattcctc tgcccgcaac ggcacgcgtg aaggcgctgc gcgaggcggg cgatcggtcc
     1201 ttggggagcg gacacgacac ggcctccgca gcctgaccag ggcaaaaggc agggcctgat
     1261 cagccgatgg accacaacgg ccgggggcag ttctgcgcaa tcggacgaaa cgccggaccc
     1321 tctcgcaacg aaaaagcccc gcatgagcgg ggcttttctt cgcaacgtgg actcagtcct
     1381 cgcggtagcg gcgcagcttc agggccttgc cggcgacgcg ggtgtccttg agcttgctca
     1441 gcaggcgctc gaggccgtct tccggcaact cgaccaggct gaaggtctcg cggatctgga
     1501 tgcggccgat ggcgtcgcgc tgcaggccgc cctcgttgag gatggcgccc agcaggttct
     1561 tcgcggcgat gccgtcgcgg gtacccaggg cggtgcggca gcgcaccttg ccttcgctcg
     1621 gcgcggccat cggacggcgc tggtactcac cacgctcacc gccacgctcg ccacggtccg
     1681 gacggtcgcc gtcgcgctcg cgacgctcac gcggggcgcc gacgcccggc accagcggct
     1741 gctcgcgctc gacgctggcc aggtccaggg cctgaccgtt ggtgaccttc ttcagcagcg
     1801 ccgcggccag ggcgcgcggg gtgcagccga tgtcggcaat gagttggtcg agcagcgcgc
     1861 cgtggctggc ttcggcctcg gcggccagcg gcgccaggcc ggcggtgagc ttcttgatgc
     1921 gggcgtccag cacctgctgc gggttgggca gcttgacctc gccgaccttc tgcccagtga
     1981 cgcgctcgat cacctgcagc atgcggcgtt cacgcggcgt caccagcagc agggcgcgac
     2041 cttcacgacc ggcacggccg gtacggccga tacggtgcac gtaggactcg gggtcgtacg
     2101 gcatgtcgac gttgagcacg tgggtgatgc gcggtacgtc gataccacgg gcggctacgt
     2161 cggtggcgac cacgatgtcc agacggccgt ccttcagcga ctcgatcacg cgctcgcgct
     2221 ggttctgggc gatgtcgccg ttcagcgcgg cggccttgta gcccttggct tccagggcgc
     2281 tggccaggtc cagggtggcc tgcttggtgc gcacgaaggc gatcagggcg tcgaagtctt
     2341 cgacttccag caggcgggtc acggcgttga tcttctgatc ggcgtggatc atcagatgcg
     2401 cctgctcgat gcgcgacacg gtctgggtct tggccgcgat cttgacgtgc ttgggctcgc
     2461 gcaggtgctt ctcggcgatc tcgcggatcg agtgcggcag ggtggcggag aacagcacgc
     2521 tctggcgggt ggccggcatg gcctggaaga tcacttccag gtcgtccatg aagccgagct
     2581 tgagcatctc gtcggcctcg tccagcacca ggtggcggat ggtcgacagc agctggtcgt
     2641 tgcggctcag gtggtcgacc aggcggcccg gggtggccac gatgatctgc gcgcccatgc
     2701 gcagggactt cagttgcggg cccatgggcg cgccgccgta gacggccacc acgttcacgc
     2761 cgggcatctg cttggagtag gtctcgaagg cggtggccac ctgcagggcc agctcgcggg
     2821 tcggcgcgag gatcagcgcc tgcggctcgc gcttggccgg gtcgatccgg gacaggatcg
     2881 gcagggcaaa ggcggcggtc ttgccggtac cggtctgggc ctggccgatc atgtcgtggc
     2941 cggccaggat catcgggatg gcctgggcct gaatggggga cggctcttcg taaccgaccg
     3001 cggtcagcgc ggcgagaatg gaaggatgaa ggccgagatc ggcaaaggtg ccggtttcct
     3061 gggtcatggg tctgcctctg tgtgcatccg caaaaaccca ggaacaaagg ctgcgcgtgc
     3121 cgtgtaggac cttgtgggtc accctggcag ccgatcgacg ggaatttgcg aaaacgatgg
     3181 atgtaacgtc aagggtagtc cgcggggcgg accagcagcg aagcggcgct tcgtgaaatt
     3241 gacggggcca gttttggccg ggcgcgaatc atacaggaaa a
//
LOCUS       DATIHC010000683         5657 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_41792, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000683 DATIHC010000000
VERSION     DATIHC010000683.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5657
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41792"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..441)
                     /locus_tag="VLF16_11345"
     CDS             complement(<1..441)
                     /locus_tag="VLF16_11345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSX71515.1"
                     /translation="MIEIKNLTKRFAHHTAVDGLSFTVQQGEVLGFLGPNGAGKSTTM
                     KMLTGFLAPTSGTASVLGFDIQRDTLKAQQQIGYLPEGAPCYGDMTVRGFLEFIAEVR
                     GFRGAEKQQRVLRAVEQVELEKVLEQSIETLSKGFKRRVGLAQAI"
     gene            747..3233
                     /gene="plsB"
                     /locus_tag="VLF16_11350"
     CDS             747..3233
                     /gene="plsB"
                     /locus_tag="VLF16_11350"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004366 - glycerol-3-phosphate
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsB"
                     /protein_id="HSX71516.1"
                     /translation="MTRSPLRRLAFGALRRLLFLWVRSETINQSSFNLRLDRSKPVFY
                     VLQQPSAADLAVVDRECSKAGLPRPVLPVALGDQLEPAGFFYLTRSPSWFGGHDKRGA
                     PPTLQRILASLDGNALDDAQIIPVSVFWGQSPDRETSPWKLLFADTWAVTGRLRKLVS
                     ILILGRKTRVQFSAPIHLRELLDQNKGRERTLRMVQRILRVHFRNLKTTVIGPDVSHR
                     RNLVKGLIHGPLVRQAIREEAEREKIGIDKAEAQALRYGNEIASDYTYTAIRFLETVL
                     SWFWNKLYEGIQVNHLEAVRDIAHGHEIIYVPCHRSHIDYLLLSYLLFRNGLTPPHIA
                     AGINLNMPVVGGLLRRGGAFFMRRTFKGNPLYTAVFNEYLHTLFSKGFPVEYFVEGGR
                     SRTGRTLQPKTGMLAITLRSFLRSSRLPIAFVPVYIGYERVLEGRTYLGELRGAAKKK
                     ESIFDIFKVIGAIRKQRFGSVWVNFGEPIKLAEFLDAEQPGWRSQDYGDQYRPEWLNQ
                     TTNRLGERVAQHLNEAAAINPVNLVGLALLSTAKLALDEKALARVLDLYLALLRKVPY
                     SPHATLPEGDGQDLIRYVQSMDLLAEQKDALGKILYLDEQNAVLMTYYRNNVLHVFAL
                     PALLASFFLSSSRMSREQILRYVAALYPYLQSELFIRWSLDELEGVVDQWLEAFVEQD
                     LLRREDDMFIRPAPSSRQFVLLTLLARAIVQTLQRFYMATALLLNAGQYALSAEELEN
                     LCVVMAQRLSILHGLNAPEFFDKSLFRHFIQTLLDQGVLRQNADGKLSHHPQLAELVE
                     GAAKRVLPAEIRLSIRQVALERGEEAEAPA"
     gene            complement(3297..3956)
                     /locus_tag="VLF16_11355"
     CDS             complement(3297..3956)
                     /locus_tag="VLF16_11355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017674836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR04211 family SH3 domain-containing protein"
                     /protein_id="HSX71517.1"
                     /translation="MPPFRPSRFPFFPRFRTLGACLIGGLLAAGPAKAEEAGNARWVS
                     DSLNTYVRSGPTDGYRIVGTLTSGEKVELLRTQGDYSQVRGEDGSSVWIPSRDLQTVP
                     GQAERLPQLEQQVAELSAELKGIDDTWKTRVQGMQETLDSRKALIDELQVARSSLDSE
                     LTQVRSELREAQAQLGDENKQVLMRYMVYGSSIAGGGLLAGLILPTLLRVRRKRNDQW
                     V"
     gene            4228..4905
                     /locus_tag="VLF16_11360"
     CDS             4228..4905
                     /locus_tag="VLF16_11360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013792603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4197 domain-containing protein"
                     /protein_id="HSX71518.1"
                     /translation="MLRVTTLAAGLLLSAGAHALTLSDLSQSDASGGLKDALTQGAQI
                     AVKQLGKPGGFSNNEEVRIELPGKLGKAAKTMKMMGMGEQVEELEDSMNKAAEAAVPQ
                     AQAILVDAVKKMTVSDAKAILAGGEDSATQYLNKSSREQIRAKFLPIVKQATDKVGLV
                     QQYNGFAGQAAAFGVVDAKSANVENYVTEQALDGLFKMIAEQEASLRQNPAGAATSLA
                     KKVFGAL"
     gene            complement(5306..>5657)
                     /locus_tag="VLF16_11365"
     CDS             complement(5306..>5657)
                     /locus_tag="VLF16_11365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013692109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71519.1"
                     /translation="LLAQLAACLAIGSHALLPESQRELLAALPKEVQKRVATVADWTS
                     LEAEFDAILHHGDSDQLREVSQQAARRKGAIVSVHGLNRGETDIPLERLLIEHALSVN
                     TAAAGGNASLMTIG"
BASE COUNT          944 a         1969 c         1849 g          895 t
ORIGIN      
        1 gatcgcctgg gccaggccga cgcggcgctt gaagcccttg gacagcgtct cgatgctctg
       61 ctccagcacc ttctccagct cgacctgctc gaccgcgcgc agtacccgct gctgcttctc
      121 ggcgccgcgg aagccacgga cttcggcgat gaactcgagg aagccgcgca ccgtcatgtc
      181 gccgtagcag ggcgcgcctt cgggcaggta gccgatctgc tgctgggcct tgagggtgtc
      241 gcgctggatg tcgaagccga ggacgctggc ggtgccggaa gtcggcgcca ggaacccggt
      301 gagcatcttc atggtggtgg atttaccggc cccgttggga ccgaggaagc ccagcacttc
      361 cccctgctgg accgtgaagc tgaggccatc gacggccgtg tgatgggcaa aacgcttggt
      421 tagatttttt atttcgatca tggctctcgt cccgacggga gaaccccggg ccatgctgac
      481 cacgggggtc ttgcaaacgc tggcggacta taaaagtcga ccgacggcaa ggcaagacaa
      541 gcggttttag gaaaagttgc agatccggcg ggatgttcgc cgccatgccc cgcgcgcgcg
      601 cctgcctcgc ctgcccgtgc ggcgccacag gccaggcgcc acgcgggttg cagtgaacac
      661 ttgtagccgc acgctttttg ccgcgaaggg gcgaatgcgg cacactagcc gccccgagca
      721 accgctcgtt tccacagccg cactctatga cccgctcccc gctccgccgc ctcgccttcg
      781 gcgccctgcg ccgcctgctc tttctctggg tacgctcgga aaccatcaac cagtcgtcgt
      841 tcaatctgcg cctggatcgc agcaagccgg tgttctacgt gctgcagcaa ccctcggcgg
      901 cggacctggc ggtggtggac agggaatgca gtaaggccgg cctgccgcgg ccggtgctgc
      961 cggtggcgct gggcgaccag ctggagccgg ccggcttctt ctacctgacc cgctcgccga
     1021 gctggttcgg cggccacgac aagcgcggcg ctccgcccac cctgcagcgc atcctcgcca
     1081 gcctcgacgg caacgccctg gacgacgcgc agatcatccc ggtcagcgtg ttctggggcc
     1141 agtcgccgga ccgcgagacc agcccgtgga agctgctgtt cgccgacacc tgggcggtca
     1201 ccgggcgcct gcgcaagctg gtcagcatcc tcatcctcgg ccgcaagacc cgcgtgcagt
     1261 tctccgcgcc gatccacctg cgcgagctgc tcgaccagaa caagggccgc gagcgcaccc
     1321 tgcgcatggt ccagcgcatc ctgcgggtgc acttccgcaa cctgaagacc acggtgatcg
     1381 gccccgacgt gtcgcaccgg cgcaacctgg tgaaaggcct gatccacggc ccgctggtgc
     1441 gccaggcgat ccgcgaggag gccgagcgcg agaagatcgg catcgacaag gccgaggccc
     1501 aggccctgcg ctacggcaac gagatcgcct cggactacac ctacaccgcc atccgcttcc
     1561 tcgaaacggt gctgagctgg ttctggaaca agctgtacga gggcatacag gtcaatcacc
     1621 tggaggcggt gcgcgacatc gcccacggtc acgagatcat ctacgtgccc tgccaccgca
     1681 gccacatcga ctacctgctg ctgtcctacc tgctgttccg caacggcctg accccgccgc
     1741 acatcgccgc cggcatcaac ctcaacatgc cggtggtcgg cggcctgctg cgccgcggcg
     1801 gcgccttctt catgcgccgc accttcaagg gcaacccgct gtacaccgcg gtgttcaacg
     1861 agtacctgca caccctgttc agcaagggct tcccggtcga gtacttcgtc gagggcggcc
     1921 gctcgcgcac aggccgcacc ctgcagccga agaccggcat gctggccatc accctgcgca
     1981 gcttcctgcg ttcgtcgcgc ctgccgatcg ccttcgtgcc ggtctacatc ggctacgagc
     2041 gcgtgctcga aggccgcacc tacctgggtg agctgcgcgg cgcggcgaag aagaaggagt
     2101 cgatcttcga catcttcaag gtcatcggcg ccatccgtaa gcaacgcttc ggcagcgtct
     2161 gggtcaactt cggcgagccg atcaagctgg ccgagttcct cgacgccgag cagccgggct
     2221 ggcgtagcca ggactacggc gaccagtacc gccccgagtg gctgaaccag accaccaatc
     2281 gcctcggcga gcgcgtggcc cagcacctca acgaggccgc ggcgatcaac ccggtcaatt
     2341 tggtcggcct ggcgctgctc tccaccgcca agctggcgct ggacgaaaaa gccctggccc
     2401 gcgtgctcga cctgtacctg gcgctgctgc gcaaggtgcc ctactcgccc cacgccaccc
     2461 tgccggaagg cgatggccag gacctgatcc gctacgtgca gagcatggac ctgctggccg
     2521 agcagaagga cgccctgggc aagatcctct acctggacga gcagaacgcc gtcctgatga
     2581 cctactaccg caacaacgtg ctgcacgtgt tcgccctgcc cgcgctgctg gccagcttct
     2641 tcctcagcag ctcgcgcatg agccgcgagc agatcctgcg ctacgtggcc gcgctgtatc
     2701 cgtacctgca gtcggagctg ttcatccgct ggtccctgga tgagctggaa ggcgtggtcg
     2761 accagtggct ggaggccttc gtcgaacagg acctgctgcg ccgcgaggac gacatgttca
     2821 ttcgcccggc gcccagctcg cgccagttcg tcctgctcac cctgctggcc cgcgccatcg
     2881 tgcagaccct gcagcgcttc tacatggcca ccgccctgct gctcaacgcc ggccagtacg
     2941 ccctgagcgc ggaagaactg gagaacctct gcgtggtgat ggctcagcgc ctgtcgatcc
     3001 tgcatggcct caacgcgccg gagttcttcg acaagagcct gttccgccac ttcatccaga
     3061 ccctgctgga tcagggcgtg ctgcgccaga acgccgacgg caaactcagc caccacccgc
     3121 agctggcgga gcttgtggaa ggcgcggcca agcgcgtgct gccggcggag attcgcctgt
     3181 cgatccgcca ggtcgcgctg gagcgtggcg aagaagccga ggccccggcc taaggggctt
     3241 atcggcgcgc gacctccggc atcgcgcatg ccggaggcac ttgcctcagc gtggactcag
     3301 acccactggt cgttgcgctt gcgccgtacc cgcagcagcg tcggcaggat cagccccgcc
     3361 agcagcccgc cgccggcgat gctgctgccg tagaccatgt agcgcatcag cacctgcttg
     3421 ttctcgtcgc ccagctgcgc ctgggcctcg cgcagctcgg agcggacctg ggtcagctcg
     3481 ctgtccagcg aggagcgcgc cacctgcagc tcgtcgatca gcgccttgcg cgagtccagg
     3541 gtctcctgca tgccctgcac gcgggtcttc caggtgtcgt cgataccctt gagctcggcg
     3601 ctcagctcgg ccacctgctg ctccagctgc ggcaggcgct cggcctgccc cggcactgtc
     3661 tgcaggtcgc ggctgggaat ccacacgctg ctgccgtcct cgccacgcac ctggctgtaa
     3721 tcgccctggg tgcgcagcag ttcgaccttc tcaccggagg tgagcgtgcc gacgatgcgg
     3781 tagccatcgg tgggcccgct gcgcacgtag gtgttcaggc tgtcgctgac ccagcgcgcg
     3841 ttgccggcct cctcggcctt ggccgggccg gccgccagca gcccgccgat caggcaggcg
     3901 ccgagggtgc ggaagcgagg aaaaaagggg aaacgggagg ggcgaaacgg gggcataggc
     3961 aatcttcact tggcggtggc atcgcgcggc gaacggcggt gcggacgaac ggagaatcgg
     4021 ccccgcacac gcgaacgccg gcgccaacgc ctgagacgaa gggccatgcg aaccgccctg
     4081 gcgagccgac agcagacaga ctgccgaggt tcgaccaagt tcactcatgg ccggggaaag
     4141 agacgggctg tcatacgctc gcggcgtttg gctcccccgc tgctctccgt tactctcagg
     4201 ccatctcccg tgcattgagg aagtcccatg ctccgcgtca ccactctggc cgccggtctg
     4261 ttgctgtccg ccggcgccca cgcgctcacc ctgtccgacc tgtcccagag cgacgccagc
     4321 ggtggcctca aggacgccct gacccagggc gcgcagatcg ccgtgaagca gctcggcaag
     4381 ccgggcggct tcagcaacaa cgaggaagtg cgcatcgagc tgcccggcaa gctgggcaag
     4441 gccgccaaga ccatgaagat gatgggcatg ggcgaacagg tggaagagct cgaagacagc
     4501 atgaacaagg ccgccgaagc cgccgtgccg caagcccagg cgatcctggt ggacgcggtg
     4561 aagaagatga ccgtgagcga tgccaaggcc atcctcgccg gcggtgagga ctctgccacc
     4621 cagtacctga acaagagcag ccgcgagcag atccgcgcca agttcctgcc catcgtcaag
     4681 caggccaccg acaaggtcgg cctggtccag cagtacaacg gcttcgccgg ccaggccgcg
     4741 gccttcggcg tggtcgacgc gaagagcgcc aacgtcgaga actacgtgac cgagcaggcg
     4801 ctggacggtc tgttcaagat gatcgccgag caggaggcga gcctccgcca gaacccggcc
     4861 ggcgcggcca ccagtctggc gaagaaggtg tttggcgcgc tgtaaccgca gcagctgaaa
     4921 agaccgtagc ccggatgcaa tccgggaagc aggcaagtcc gccccccgga ttgcatccgg
     4981 gctaccgtgc tgggtggaac gagcaaaccc ctgaaaaagc aaaagcccgg cgaatgccgg
     5041 gcttttttgt ggctgggctt gtggccctgc cgggtgccgg aacgagccgg cctcgggtag
     5101 taacgcgtcg taccgggcgg atagccccca caagggtgta cggcgcgtgg tgccggacga
     5161 gacgtcgcgg caccggtgag cgcctgatgg cgctcggggt tgcaggagtc gcctgactac
     5221 cgtgcaggat gccaggcgaa tctttcggcc agctttcgcc ggcccctcgc caaccgtgac
     5281 gggctggcga gggtgtgcgg gtggatcagc cgatggtcat caggctggcg ttgccgccgg
     5341 cggccgcggt gttcacgctc agggcgtgct cgatcagcag gcgctccagc gggatgtcgg
     5401 tttcgcccct gttcaggccg tgcacgctga cgatggcgcc cttgcgccgg gcggcctgct
     5461 ggctcacttc gcgcagctga tcggagtcgc cgtggtgcag gatggcgtcg aactcggcct
     5521 ccaggctggt ccagtcggcc accgtggcaa cgcgcttctg cacctccttg ggcagcgcgg
     5581 cgagcagctc gcgctggctc tccggcagca gcgcgtggct gccgatggcc aggcaggcgg
     5641 ccaactgcgc cagcagg
//
LOCUS       DATIHC010000684         2766 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29945, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000684 DATIHC010000000
VERSION     DATIHC010000684.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2766
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29945"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..423)
                     /locus_tag="VLF16_11370"
     CDS             complement(<1..423)
                     /locus_tag="VLF16_11370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017676650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HSX71520.1"
                     /translation="MVTTVILGMLCVHLLCFCVMFLLISTRLNGKKMGMEVFALGNLL
                     LGLAYILQLLGGPAGWGLMSVVNHTLTLCAPIAYVLGALRFFDRPTPVWRPLLTVAAG
                     YTAMQVLVQTTLGSEARHALLAGSCAALFLAMAMAALYA"
     gene            422..694
                     /locus_tag="VLF16_11375"
     CDS             422..694
                     /locus_tag="VLF16_11375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71521.1"
                     /translation="MDSNTWESATGAEHGGHDGTPARTFPGVMAGLLDVGNASHMSRR
                     MTITGATGLTMPGELELLLEGREFQPLSRPRSLLVESGSLPQPQGG"
     gene            791..2386
                     /locus_tag="VLF16_11380"
     CDS             791..2386
                     /locus_tag="VLF16_11380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020191360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid
                     hydroxylase"
                     /protein_id="HSX71522.1"
                     /translation="MRNNENALAPPPTVDVLVIGHGPVGATLAALLGRYGVQTLAVDK
                     VHDILLMPRAIALDNEALRILQLAGLAEDAFDKIVIPEVRMHCPMVGQFGRANTSGSL
                     DGHPKLVTFYQPDLEHSMRAQCRRFDNVFSLGGLTLETLSQDGDGVTATLRSEDGTPH
                     QVRARYLVGADGASSRVRSLIGQDFEGQSYSEDWLIVDAAGREQQAIDHVEFLCDHRR
                     PTPHMPAPGGRERWEFMLQAGESREQMESDERIAELLSKWIEPGHLKIERKAVYRFHA
                     RCCDSFQKGRVFLVGDAAHITPPFVGQGLVAGLRDAANLAWKLAWVLHGRAEPKILDT
                     YDQERRPHAREMIALAKLMGRMVMPSNAPTALLVHGLMRTLRLVPPLRRHFEELEIKP
                     KNNFKRGLFARRAWSRRLRRGGLFPQGQVRAADGSIGLSDDALGDRLTLVGFGIDPRE
                     HLDPAAQQRWERSGGGYLQVGRHGQKPGVLTPFVEDIGQALLGCTPERTLAVIRPDRI
                     VMHEGPHTRADQLVRESLALLGH"
     gene            2451..>2766
                     /locus_tag="VLF16_11385"
     CDS             2451..>2766
                     /locus_tag="VLF16_11385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009044539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSX71523.1"
                     /translation="MSKTSTPDVPLTRGHKKRERTRQGLIDAALRLFARKEVGEVALL
                     EVASEADVASGTIYNYFRSRDEVVEAVGIALADEFSEAIELLNVHVDSGARRLSIGVR
                     MFI"
BASE COUNT          504 a          898 c          912 g          452 t
ORIGIN      
        1 ggcgtagagc gcggccatgg ccatggccag aaagagcgcg gcgcacgagc ccgccagtaa
       61 cgcgtgacgg gcctcgctgc cgagcgtcgt ctgcaccagc acctgcatcg ccgtgtaacc
      121 ggccgccacc gtcagcagcg gccgccacac cggggtgggt ctgtcgaaga agcgcagggc
      181 gccgaggacg taggcgatgg gcgcacagag tgtcagcgtg tggttgacga cgctcatcaa
      241 tccccagccc gccgggccgc ccagcaactg caggatgtag gcgagcccga gcagcagatt
      301 gcccagggcg aatacttcca tgcccatctt cttgccgttc agccgggtgc tgatcagcag
      361 gaacatcacg cagaaacaca gcagatgcac gcagagcatg ccgaggatga cggtggtgac
      421 catggattcg aacacgtggg agtcagcgac gggagccgag cacggagggc atgacggaac
      481 gccggccagg acgttccccg gcgtgatggc ggggctattg gatgtcggga atgctagcca
      541 catgtcgcgt cggatgacaa tcaccggcgc gaccgggctg acaatgccgg gcgagctgga
      601 gcttctgctg gagggccggg aattccagcc gctcagccgc ccgcgatcgc tgctcgtcga
      661 aagcggcagc ctgccccaac cgcaaggggg gtgagcgagt taataggatg tatctcaata
      721 ttgagagttg attcattttt gaatatcctg cgcggaacgc cctaccctcc aacaatgaca
      781 aggggtctgc atgcgcaata acgagaatgc tctcgcaccg ccgccaaccg ttgacgtact
      841 ggtgatcggc cacggccccg tcggcgccac gctggcagcc ctgctcggcc gctacggcgt
      901 gcagaccctg gcggtcgaca aggtccacga catcctgctg atgcctcgcg ccatcgcact
      961 cgacaacgag gcattgcgga tcctgcaact ggccggcctg gcggaagatg ccttcgacaa
     1021 gattgtcatt cccgaggtgc gcatgcactg ccccatggtt ggccagttcg ggcgcgccaa
     1081 taccagcggc agcctcgatg gccaccccaa gctggtgacc ttctatcagc cggatcttga
     1141 gcactcgatg cgcgctcaat gccggcgctt cgacaatgtg ttcagcctcg gcggcctcac
     1201 cctggaaacg ctgagccagg acggtgacgg cgtcaccgcc acgttacgca gtgaggacgg
     1261 cactccgcat caggttcgcg cgcgctatct ggtcggcgcc gatggtgcca gctcgcgggt
     1321 acgtagcctg atcggtcagg acttcgaagg tcagagctac agcgaggact ggctgatcgt
     1381 cgatgcggca ggccgcgagc agcaggcgat cgaccatgtc gagttcctct gcgaccatcg
     1441 ccgccctact ccgcacatgc cggctcccgg cgggcgcgag cgctgggagt tcatgctgca
     1501 ggccggcgag agccgcgagc agatggagag cgacgagcgc atcgccgaac ttctgagtaa
     1561 atggatcgag cccggccatc taaagatcga gcgcaaggcg gtgtaccgtt tccacgcccg
     1621 ctgctgcgac agtttccaga agggccgggt gttcctggtc ggcgatgcgg cgcacatcac
     1681 tccgcctttc gttggccagg gcctggtcgc cggcctgcgt gacgccgcca acctggcctg
     1741 gaaactggcc tgggtgctac acggtcgcgc cgagccgaag atcctcgaca cttatgacca
     1801 ggagcgtcgc ccgcacgccc gcgagatgat cgcgctggcc aagctaatgg gccgcatggt
     1861 gatgccgagc aatgcaccga cggcactgct cgtccatggc ctgatgcgca ccctgcgcct
     1921 ggtgccgccg ttgcggcgcc acttcgagga gctggaaatc aagccgaaga acaacttcaa
     1981 acgcggcctg tttgcacgtc gtgcgtggag ccgtcgtctg cgccgtggtg gcctgttccc
     2041 acagggccag gtgcgcgcgg ccgatggcag tatcggcctg agcgacgatg ccctgggtga
     2101 tcgcctcacc ctggtcggat tcggcatcga cccgcgtgaa cacctggacc cagccgcaca
     2161 acagcgctgg gagcggagtg gtggcggata tctgcaggtc ggccggcacg ggcagaagcc
     2221 tggcgtcctg acgcctttcg tggaggatat cggccaggcg ctgctcggct gcacgcccga
     2281 gcgcacgctg gcggtgatcc gcccggaccg aatcgtcatg catgagggcc cccacacccg
     2341 cgccgatcag ctggtgcgcg agagccttgc cctgctgggc cactgaacgt agctgccccg
     2401 gtggcggtgc ttccactatc atcggggccg gctcccgaac gagtactcca atgagcaaga
     2461 cttccacccc cgacgtgccc ctcactcgcg gccacaagaa acgcgagcgc acccgtcagg
     2521 ggttgatcga cgcggcgctg cgcctgttcg cgcgcaagga ggtcggtgag gtcgcgctgc
     2581 tggaagtggc cagcgaggcg gatgtcgcca gcggcaccat ctacaactat tttcgtagcc
     2641 gcgacgaagt ggtcgaggcg gtgggcatcg ccctcgccga tgagttctcc gaggccatcg
     2701 aactgctcaa tgtgcatgtc gacagcggtg cccgccgcct gagtatcggc gtgcgcatgt
     2761 tcatcc
//
LOCUS       DATIHC010000685         2491 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29947, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000685 DATIHC010000000
VERSION     DATIHC010000685.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2491)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2491)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2491
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29947"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1948
                     /locus_tag="VLF16_11390"
     CDS             <1..1948
                     /locus_tag="VLF16_11390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008032109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSX71524.1"
                     /translation="VGTFAMMSLAGFSINTLTLLALVLAIGLVVDDAIVVVENIHRHI
                     EEGKTPFDAALEGAREIAVPVISMTITLAAVYAPIGFLEGLTGALFKEFALTLAGAVI
                     ISGIVALTLSPMMCSRLLRHEENPSGLAHKLDQIFDRLKRRYQTALHGTLNTRPVVIV
                     FGVIVLCLIPVLLMFSKNELAPEEDQGIVFLFANAPQPTNLDYMNAYTDQFVKIFKEF
                     PEYYSSFQINGFDGVQSGIGGFLLKPWGERERTQMELLPIVQSRLNDIPGLQIFGFNL
                     PSLPGTGEGLPFQFVVNTPNDYESLLQVTERIKQRAMESGKFAFLNVDLAFDKPEVVV
                     DIDRAKAAQMGVSMQDLGATLAILLGEGEVNRFTIDGRSYKVIAQVERPYRDNPSWLS
                     SYYVKSESGEMVPLGTLIKVSDRARPTKLKQFQQLNAAMIEGVPIVSMGEAVEAVAQI
                     AREEAPRGYTFDYAGASRQYIQEGSALYVTFGLAMAIIFLVLAAQFESFRDPLVILVT
                     VPLSICGALIPIFLGFSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRRDKGLSVRE
                     AIEEAASIRLRPVLMTTAAMVFGMVPLILATGAGAVSRFDIGLVIATGMSIGTLFTLF
                     VLPCVYTLLARPDKAPAAAGAPAH"
     gene            complement(2009..2239)
                     /locus_tag="VLF16_11395"
     CDS             complement(2009..2239)
                     /locus_tag="VLF16_11395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71525.1"
                     /translation="MKLDIARGLFLVGAMSVTALAAAAWHEPAPRVIDASSCTTCPAV
                     SSRHVDIGAVEPDGDNLLLLIFGLSHAMKAEQ"
BASE COUNT          419 a          847 c          804 g          421 t
ORIGIN      
        1 ggtcggcacc ttcgcgatga tgagcctggc cggcttcagc atcaacacgc tgacgctgct
       61 ggcgctggtg ctggcgatcg gcctggtggt ggacgacgcc atcgtcgtgg tggagaacat
      121 ccaccgccac atcgaggagg gcaagacgcc gttcgacgcg gcgctggagg gcgcgcgcga
      181 gatcgccgtg ccggtgatct ccatgaccat caccctggcc gcggtgtatg cccccatcgg
      241 cttcctcgag ggcctgaccg gtgcgctgtt caaggagttc gcgttgaccc tggccggcgc
      301 ggtgatcatc tccggcatcg tcgccctgac cctgtcgccg atgatgtgct cgcgcctgct
      361 gcgtcacgag gagaaccctt cgggcctggc gcacaagctc gaccagatct tcgaccgcct
      421 caagcgtcgc taccagacgg ccctgcacgg cacgctcaac acccgcccgg tggtgatcgt
      481 gttcggcgtg atcgtgctgt gcctgattcc ggtgctgctg atgttcagca agaacgaact
      541 ggcgccggag gaggaccagg gcatcgtgtt cctgttcgcc aacgcgccgc agccgaccaa
      601 cctggactac atgaacgcct acaccgacca gttcgtgaag atcttcaagg agttccccga
      661 gtactactcg tccttccaga tcaacggctt cgacggcgtg cagtccggca tcggcggctt
      721 cctgctcaag ccctggggcg agcgcgagcg gacccagatg gagctgctgc cgatcgtcca
      781 gagccgcctc aacgacatcc ccggcctgca gatcttcggc ttcaacctgc cgtcgctgcc
      841 gggtaccggc gagggtctgc cgttccagtt cgtggtcaac acgccgaacg actacgagtc
      901 gctgctgcag gtgaccgagc gcatcaagca gcgcgccatg gagtccggca agttcgcctt
      961 cctcaacgtc gacctggcct tcgacaagcc cgaggtggtg gtcgacatcg accgcgccaa
     1021 ggccgcgcag atgggcgtgt cgatgcagga cctgggcgcg accctggcca tcctgctcgg
     1081 cgagggcgag gtcaaccgct tcaccatcga cggccgcagc tacaaggtga tcgcccaggt
     1141 cgaacggccc taccgcgaca acccgagctg gctgagcagc tactacgtga agagcgagag
     1201 cggcgagatg gtaccgctgg gcacgctgat caaggtcagc gaccgcgccc ggccgaccaa
     1261 gctcaagcag ttccagcagc tcaacgcggc gatgatcgag ggcgtgccca tcgtcagcat
     1321 gggcgaggcg gtggaggccg tggcgcagat cgcccgcgag gaagcgccgc gcggctacac
     1381 cttcgactat gccggcgcct cgcgccagta catccaggaa ggcagcgcgc tgtacgtcac
     1441 cttcggtctg gccatggcga tcatcttcct ggtgctggcc gcgcagttcg agagcttccg
     1501 cgacccgctg gtgatcctgg tcaccgtgcc gctgtcgatc tgcggcgcgc tgatcccgat
     1561 cttcctcggc ttctccagca tgaacatcta cacccaggtg ggtctggtga cgctgatcgg
     1621 cctgatcagc aagcacggca tcctgatcgt cgagttcgcc aaccagctgc gccgcgacaa
     1681 gggcctgtcg gtgcgcgagg cgatcgagga agccgcgtcg atccgcctgc gcccggtgct
     1741 gatgaccacg gcggcgatgg tgttcggcat ggtgccgctg atcctcgcca ccggcgccgg
     1801 cgcggtgagc cgcttcgaca tcggcctggt gatcgccacc ggcatgtcga tcggtaccct
     1861 cttcaccctg ttcgtgctgc cctgcgtcta cacgctgctg gcccgcccgg acaaggcgcc
     1921 cgccgcggcc ggtgcgccgg cgcactgacc gacggcgaaa cgaaaaagcc ccgcacgtgc
     1981 ggggcttttt tcatggcggg cctggcgact actgctcggc cttcatcgca tgggacaggc
     2041 cgaagatcag cagcagcagg ttgtcgccgt ccggctccac cgcgccgata tcgacgtggc
     2101 gactggagac cgcggggcac gtcgtgcagc tgctcgcatc gatcacccgc ggcgcgggct
     2161 cgtgccaggc ggcggccgcc agggccgtca cgctcatggc gccgacgagg aacaggcctc
     2221 tcgcgatatc taatttcatc tggttacccc tgtgatgcgc tgccaagcgc ctgacaaaaa
     2281 ctagtccaga ccgttccatg gcaacatccg aaccgacgag cggttctccg ggctccgcgt
     2341 acctcgcctg accaggcgag cgcgcggcga aagggttgca cgggattgtt gcaatcgtgc
     2401 gaacgccgca gccggccagc gaccatacgt tcaggggcca cgaaacgaca ggcgattcgg
     2461 acgtatggcc gggcatccgt cgcttcagga c
//
LOCUS       DATIHC010000686         2572 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43872, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000686 DATIHC010000000
VERSION     DATIHC010000686.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2572
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43872"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..874
                     /gene="argJ"
                     /locus_tag="VLF16_11400"
     CDS             <1..874
                     /gene="argJ"
                     /locus_tag="VLF16_11400"
                     /EC_number="2.3.1.1"
                     /EC_number="2.3.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004358 - glutamate N-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional glutamate
                     N-acetyltransferase/amino-acid acetyltransferase ArgJ"
                     /protein_id="HSX71526.1"
                     /translation="PLPVAKIEGALQAALDDLQEDHWAEAATGIMTTDTLPKGASRQF
                     QHEGVTVTVTGISKGAGMIRPNMATMLGYIATDAKVAREVLRDLVRDAANKSFNRITI
                     DGDTSTNDCCMLIATGQAALPEVTSASGELFGKLKQAVLEVFMEVAQAIVRDGEGATK
                     FVTVQVNGGGNHQECLDVAYAVAHSPLIKTALFASDPNWGRILAAVGYAGVPNLDVSK
                     IDVFLGDARQGEVRIASQGGRDASYTETQGAAVMAREEIGIRIELGRGSCSETIWTTD
                     LSHEYVKINAEYRT"
     gene            1047..1679
                     /locus_tag="VLF16_11405"
     CDS             1047..1679
                     /locus_tag="VLF16_11405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HSX71527.1"
                     /translation="MSLKLVIGDKNYSSWSLRAALAMDLTGLPYEEIGIRLYQPDSRR
                     QLMAHAPTGKVPVLHTEEGPVWDSLAIAEYLAERFPEAHLWPRGQYARALARSVCAEM
                     HSGFMALRSHLSMDLARDQALAEIPAEAQADIDRVCRLWADCRQRFGQDGPYLFGHVS
                     IADAFFAPVAARLRSYRVALPDEAAAYVETIYQWPAFQRWYQAGLREVGA"
     gene            1676..>2572
                     /locus_tag="VLF16_11410"
     CDS             1676..>2572
                     /locus_tag="VLF16_11410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017518090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008413 - 8-oxo-7,8-dihydroguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nudix family hydrolase"
                     /protein_id="HSX71528.1"
                     /translation="MKRIHVAAAVIRGEDGRVLIAKRPQDKHQGGLWEFPGGKVEEGE
                     AVERALARELEEELGIRVDAARPLIQVHHDYPDKQVLLDVWEVSAFSGEPHGAEGQPL
                     AWASERELLDYEFPAANQPIVAAARLPDSYLITPDGLEPAELMRGVRAALAAGARLIQ
                     LRAPNMFDPQYRDLAVDIQGLCAGKAQLMLKGPLEWLGDFPAAGWHLTAEQLRKYAPN
                     GRPFPGQRWLAASCHGAEELALAARMGVDFVTLSPVQATQTHPDATPLGWDVAAELLR
                     GSNLPAYLLGGVGPDDRSRAWQA"
BASE COUNT          410 a          915 c          868 g          379 t
ORIGIN      
        1 gccgctgccg gtggccaaga tcgagggcgc gctgcaggcc gccctggacg atctgcaaga
       61 ggatcactgg gccgaggccg ccaccggcat catgaccacc gacaccctgc ccaagggcgc
      121 cagccgccag ttccagcacg agggcgtgac cgtcaccgtg accggcatca gcaagggcgc
      181 cggcatgatc cggccgaaca tggccaccat gctcggctac atcgccaccg acgccaaggt
      241 ggcccgcgag gtcctgcggg acctggtgcg cgacgcggcg aacaagtcgt tcaaccgcat
      301 caccatcgac ggcgacacct cgaccaacga ctgctgcatg ctgatcgcca ccggccaggc
      361 ggcgctgccg gaagtcacct cggcttcggg cgaactgttc ggcaagctca agcaggcggt
      421 gctggaagtg ttcatggaag tggcccaggc catcgtccgt gacggcgaag gcgccaccaa
      481 gttcgtcacc gtgcaggtca acggcggcgg caaccaccag gaatgcctgg acgtggccta
      541 cgccgtggcc cactcgccgc tgatcaagac cgcgctgttc gcctccgacc ccaactgggg
      601 ccgcatcctc gccgccgtcg gctatgccgg cgtgccgaac ctggacgtca gcaagatcga
      661 cgtgttcctc ggcgacgcgc gccagggcga ggtacgcatc gccagccagg gcggccgcga
      721 cgccagctac accgagaccc agggcgcggc cgtgatggcg cgcgaggaga tcggcatccg
      781 catcgaactg ggccgcggca gctgcagcga aaccatctgg accaccgatc tttcccacga
      841 gtacgtgaag atcaacgccg aataccgcac ctgagcgatg ccgtcccctc tctcttcggg
      901 agaggggacg cgggcgaggt cgctgcgggc gacgcttcgg cctcgcgccg ccattccttt
      961 cattcatggt cccatgcgca agcggaattg ttcgcggcct tgccgtgcgc gtaccctgcg
     1021 cgttcaaccc cttctaggag aacgccatgt ctctcaaact ggtgatcggc gacaagaact
     1081 attcttcctg gtcgctgcgc gcggcgctgg ccatggacct gaccggcctg ccctacgaag
     1141 agatcggcat acgcctgtac cagccggaca gtcgtcgcca gctgatggcc cacgcgccga
     1201 ccggcaaggt gccggtgctg cacactgagg aaggcccggt gtgggattcg ctggccatcg
     1261 ccgaatacct ggccgagcgc tttcccgagg cgcacctgtg gccgcgcggc caatatgccc
     1321 gggctctggc gcgcagcgtc tgcgccgaga tgcacagcgg tttcatggcc ctgcgcagcc
     1381 acctgtccat ggatctggcg cgcgaccagg ccctggccga gattcccgcc gaggcccagg
     1441 ccgatatcga ccgagtgtgc cgcctgtggg cggattgccg ccagcgcttc ggccaagatg
     1501 gcccctacct gttcggtcac gtcagcatcg ccgacgcctt cttcgccccg gtggcggcgc
     1561 gcctgcgcag ctaccgcgtg gcactgccgg acgaggccgc cgcctacgtc gagaccatct
     1621 accagtggcc ggccttccag cgctggtacc aggccgggct gcgggaggtg ggcgcgtgaa
     1681 acgcatccac gtggccgccg cggtgatccg cggcgaggat ggccgggtac tgatcgccaa
     1741 gcgcccgcaa gacaagcacc agggcggcct gtgggaattc cccggcggca aggtggaaga
     1801 gggcgaggcg gtggagcggg ccctggcccg cgagctggaa gaggagctgg gcatccgtgt
     1861 cgacgccgct cgaccgttga tccaggtgca ccacgactat ccggacaagc aggtgctgct
     1921 ggacgtctgg gaagtctctg ccttcagcgg cgaaccccac ggcgccgagg gccagccgtt
     1981 ggcctgggcc agcgagcgcg agttgctcga ctatgagttt cccgccgcca accagccgat
     2041 cgtcgcggcg gcgcgcctgc ccgacagcta tctgatcacc ccggatggcc tcgaaccggc
     2101 cgaactgatg cgcggcgtgc gcgccgccct ggccgccggc gcccggctga tccagctgcg
     2161 tgcgccgaac atgttcgacc cgcagtaccg cgacctggcg gtggacatcc agggcctctg
     2221 cgccggcaag gcgcagctga tgctcaaggg gccgctggag tggctgggtg attttcccgc
     2281 cgccggctgg cacctgaccg ccgaacagct gcgcaagtac gcgccgaatg gccggccttt
     2341 cccgggccag cgctggctgg ctgcctcctg ccacggtgcc gaggagctgg ccctggccgc
     2401 gcgcatgggc gtggacttcg tcaccctgtc gccggtgcag gccacccaga cccatccgga
     2461 cgccacgccg ctgggctggg acgtcgccgc cgagctgcta cgcggcagca acctgccggc
     2521 ttatctgctc ggcggtgtcg ggccggatga ccgttcgcgc gcctggcagg cc
//
LOCUS       DATIHC010000687         1899 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11181, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000687 DATIHC010000000
VERSION     DATIHC010000687.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11181"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..453
                     /locus_tag="VLF16_11415"
     CDS             <1..453
                     /locus_tag="VLF16_11415"
                     /inference="COORDINATES: protein motif:HMM:NF028134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alginate biosynthesis protein AlgX"
                     /protein_id="HSX71529.1"
                     /translation="HYDMSLRDFYRQAVPMVNNGCVGQPALLTNKVKLRPGSNEIFLN
                     GVNGLKELNSANHMIDLRFSDPSVHEARANVWYFSGRKESYKLEQSSRVDTGGRYLFE
                     LRDEGDWGDLTLMGLEVMSPENMPEGLTVEATVCRRHDGSRQRLASNE"
     gene            484..>1899
                     /locus_tag="VLF16_11420"
     CDS             484..>1899
                     /locus_tag="VLF16_11420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010952409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HSX71530.1"
                     /translation="MVFSSNVFLFLFLPAFLGLYYLCGNRYRNLLLLLASYAFYAWWR
                     VDFLLLFIGVTAFNYWLGLRIGEAGVRTRKAQRWMLLGVVGDLGVLGYFKYANFGVAN
                     INTALQSMGFEPFVLTAVILPIGISFYIFQSLSYLIDVYRGDVEATRHPIDFAAFIAL
                     FPQLIAGPVLRYKDLADQFTDRTHSFDKFSEGAARFMQGFVKKVFIADSLAPVVDHCF
                     GLTNPTTGEAWLGAIAYTAQLYFDFSGYSCMAIGLGLMMGFRFMENFNQPYISQSITE
                     FWRRWHISLSTWLRDYLYISMGGNRGTTFQTYRNLFLTMLLGGFWHGANWTFLIWGAW
                     HGAWLAIERAMGVDAAPDRIRPWRWAFAFLLVVLGWVIFRAENLDVAWRMYAAMFSFS
                     DWGVSELTEAKLTSLQMATLVLAYVVMAWCGLRQFRLRGAPKAPGTAAITAATNAMAT
                     LDMRVVMVRICLLLLFVVSVMK"
BASE COUNT          298 a          610 c          605 g          386 t
ORIGIN      
        1 cattacgaca tgtcgctgcg tgacttctac cgccaggccg tgcccatggt gaacaacggc
       61 tgcgtcggtc agccggcgct gttgaccaac aaggtgaagc tgcgcccggg cagcaacgag
      121 atcttcctca acggtgtgaa cggcctgaaa gagctgaaca gcgccaacca catgatcgac
      181 ctgcgcttca gcgatccgtc cgttcacgag gcgagggcga acgtctggta tttcagcggg
      241 cgcaaggagt cctacaagct cgagcagagc tcgcgggtcg ataccggcgg tcgctacctg
      301 ttcgagctgc gcgacgaagg ggactggggc gacctgaccc tgatggggct ggaagtcatg
      361 tcgccggaga acatgcccga aggcctgacg gtggaggcca ccgtgtgccg tcgccatgac
      421 ggcagccgcc agcgcctggc gagcaacgag tgatgttctt ggcccgttac tggagaagat
      481 aggatggttt tctcgtccaa cgtgttcctg ttcctgttcc tgccggcctt cctggggctg
      541 tactacctgt gcgggaaccg ctaccggaac ctgctgttgc tgctggccag ctatgcgttc
      601 tacgcctggt ggcgcgtcga cttcctgctg ctgttcatcg gggtgaccgc cttcaactac
      661 tggctgggtc tgcgcatcgg cgaggccggc gtgcgcaccc gcaaggcgca gcgctggatg
      721 ctgctcggtg tggtcggcga cctcggggtg ctgggctact tcaagtacgc caacttcggt
      781 gtggccaaca tcaataccgc gctgcagtcg atgggcttcg aacccttcgt gctcacggcg
      841 gtgatcctgc ccatcggcat ttccttctac atcttccagt cgctcagcta cctgatcgac
      901 gtctaccggg gagatgtgga ggcgactcgc catccgatcg acttcgccgc gttcatcgcg
      961 ctgttcccgc agctgatcgc cggtccggtg ctgcgctaca aggacctggc cgaccagttc
     1021 accgaccgca cccacagctt cgacaagttc tccgaaggtg ccgcacgctt catgcagggc
     1081 ttcgtcaaga aggtgttcat cgccgacagc ctggcgccgg tggtggacca ctgcttcggc
     1141 ttgaccaacc ccaccacggg ggaggcctgg ctgggcgcga tcgcctatac cgcgcagctc
     1201 tacttcgact tctcgggcta cagctgcatg gccatcggcc tgggtctgat gatgggcttc
     1261 cgcttcatgg agaacttcaa ccagccctat atcagccagt cgatcaccga gttctggcgg
     1321 cgctggcaca tcagcctgtc gacctggctg cgtgactacc tgtacatcag catgggcggc
     1381 aatcgcggta ccaccttcca gacctaccgc aatctgttcc tgaccatgct gctgggcggt
     1441 ttctggcacg gcgccaactg gacgttcctg atctggggcg cctggcacgg ggcctggctg
     1501 gccattgagc gcgccatggg tgtggacgcc gcgcccgacc gcatccgtcc ctggcgctgg
     1561 gccttcgcct tcctgctggt ggtgctcggc tgggtcatct tccgcgccga gaacctggac
     1621 gtggcctggc ggatgtatgc ggcgatgttc agcttctccg actggggcgt ttccgagctg
     1681 accgaggcca agctgaccag cctgcagatg gcgacgctgg tgctggcgta cgtggtgatg
     1741 gcctggtgcg ggctgcgcca gttccgtctg cgcggcgcac ccaaggcccc ggggaccgcg
     1801 gcgatcaccg ccgccaccaa cgcgatggcc accctcgaca tgcgcgtggt gatggtacgc
     1861 atctgcctgc tgctgctgtt cgtcgtgtcg gtcatgaag
//
LOCUS       DATIHC010000688         3649 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_6697, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000688 DATIHC010000000
VERSION     DATIHC010000688.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3649
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6697"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1056
                     /locus_tag="VLF16_11425"
     CDS             <1..1056
                     /locus_tag="VLF16_11425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003244284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008832 - dGTPase activity [Evidence IEA];
                     GO_process: GO:0006203 - dGTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase"
                     /protein_id="HSX71531.1"
                     /translation="PADLGMIVQSACLAHDIGNPPFGHSGEDAIRHWFRQAAGRGWLD
                     DMNDAQRADFLSFEGNAQGFRVLTQLEYHQFDGGMRLTYATLGTYLKYPWTARHAEAL
                     GYKKHKFGCYQNELPRLEQIAAKLGLPQLGDQRWARHPLVYLMEAADDICYALIDLED
                     GVEMELLDYAEVEALLFDLVGDDLPETYRQLGPSDSRRRKLAILRGKAIEHLTNAAAR
                     AFVEQQPALLSGALEGDLVEHMHGPAKRCVLRAKGIAREKIFQDKRKTLHEIGAYTTL
                     EILLNAFCGAALEQHSGRELSFKNRRILDLLAHYAPEPGWPLYMSFLRMIDFIAGMTD
                     SYATEMAREMTGRSSPV"
     gene            1061..2110
                     /locus_tag="VLF16_11430"
     CDS             1061..2110
                     /locus_tag="VLF16_11430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HSX71532.1"
                     /translation="MRAALRQAFSWHAGPPAWGPAMVAGLGCALPLVLGLFSGHPGFL
                     WASAGAFQAAQANPLHRFGMLRLLLLTLLGACSAGLGFWSASHPLLSLGLFACYGLLL
                     AWLQRFGTEAGKLGIGLAVCLCLGQGQFGVGTLKNADAVAALFVLGGLWVALLAFGLR
                     GLHGLRMWPHMPRLMAILRVLRRHAKRLPEQRWRLHALGCTLACAAAGLTVQLAGLQR
                     GYWLTLALIATLQLEFRGSLVRALQLSMASLAAAGLLIYFGHSLQSPPVMVAIILPLI
                     IVSRAFQAHHYGLFVLQVTVSFVLLAESLSHDWHLAQVRLFNSLIGVVLAMLVALLMH
                     GLEQWLNRRKEASQR"
     gene            2164..>3649
                     /locus_tag="VLF16_11435"
     CDS             2164..>3649
                     /locus_tag="VLF16_11435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016492003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HSX71533.1"
                     /translation="MRGKTGSKERRFPLHVHISVLFTLLLLGSGAILGLFNYHQTTQV
                     ILSSSKQLFQQMREEVESDLQQTYQPIRHLLGLLALNERNPAGDSHQRMSLLPLFAQA
                     LRDNPKLAALYLGYPDGDFFMVRPLRDARIKQIFDAPDSAAYQVWTIDRSGDARPVSE
                     SQYFDSELNWISRRQELRETYDPRSRGWYKNARERGALITTDPYVFFSTKDVGTTLAR
                     ISGGDTVIGADLTLADLSATLARHRVTPSTEVVLYRPDGAAVAYPDMRKLVVSNGTTH
                     LAQVDRLSPALGELFARGLDEDRQGAMQLAGRQWQVSYSQLAEGGPNGLRLALLAPEQ
                     ELLADAYRIRWQGAMLTLAILLLCIPLGWLMSRILVKPLRALVSEAEAIRSFDFSHPA
                     SGRSAVLEIDQLAVAMGRMKDTLAGFLEITASLSAETRFDPLLRRVLKETVDLSEADA
                     GLLFLRDGESGALEPHGLFINDEQHSLDEHRIPSYRPSENIPEWL"
BASE COUNT          574 a         1300 c         1171 g          604 t
ORIGIN      
        1 ccagccgacc tcgggatgat cgtccagtca gcctgtctgg cccacgacat cggcaacccg
       61 cccttcggcc attccggcga ggacgccatc cgccactggt tccggcaggc cgccgggcgc
      121 ggctggctgg acgacatgaa tgacgcgcaa cgggccgatt tcctcagctt cgagggcaac
      181 gcccagggct ttcgcgtgct cacccagctg gaataccacc aattcgacgg cggcatgcgc
      241 ctgacctacg ccaccctcgg cacctacctg aaatacccct ggaccgcccg ccatgccgag
      301 gcacttggct acaagaagca caagtttggc tgctaccaga acgagctgcc gcgcctggaa
      361 cagattgccg ccaagctcgg cctgccccag ctcggcgacc agcgctgggc gcgtcaccca
      421 ttggtctacc tgatggaggc ggccgacgac atctgttatg cgttgatcga tctggaagac
      481 ggcgtggaga tggagctgct cgactacgcg gaggtcgagg ccctgctgtt cgacctggtc
      541 ggcgacgacc tgccggagac ctaccgccag ctcggtccgt ccgactcgcg ccgacgcaag
      601 ctggcgatcc tgcgcggcaa ggccatcgag cacctgacca acgccgccgc ccgcgccttc
      661 gtcgaacagc agccggcgct gctgagtggc gcgctggagg gcgacctggt ggagcacatg
      721 catggtccgg ccaagcgttg cgtgctgcgc gccaagggca tcgcgcggga gaagatcttc
      781 caggacaagc gcaagaccct gcacgaaatc ggcgcctaca ccaccctgga gatcctgctc
      841 aatgccttct gcggcgcggc gctggagcag cacagcggac gcgagctgtc gttcaagaac
      901 cggcgcatcc tcgacctgct ggcgcactac gcgccggagc cagggtggcc gttgtacatg
      961 tcgttcctgc gcatgatcga ctttatcgcc ggcatgaccg acagctacgc caccgagatg
     1021 gcccgggaga tgaccgggcg ctccagcccg gtgtgacagg atgagagcag cgctgcggca
     1081 ggcattcagc tggcacgcgg gccctccggc ctgggggccg gccatggtcg ccggcctggg
     1141 ctgcgccttg ccgctggtgc tcggcctgtt cagcggccat ccgggttttc tctgggcctc
     1201 ggccggcgcc ttccaggcgg cgcaggccaa tcccctgcac cgcttcggca tgctgcgcct
     1261 gctgctgttg accctgctcg gcgcctgcag cgccggcctg ggcttctggt ccgccagcca
     1321 cccgctgctc agcctgggct tgttcgcctg ctacggcctg ttgctggcct ggctgcaacg
     1381 cttcggcacc gaggcgggca agctgggcat cggcctggcg gtgtgtctgt gtctcggcca
     1441 gggccagttc ggcgtgggca cgctgaagaa tgccgacgcg gtggccgcgc tgttcgtcct
     1501 cggcgggctc tgggtcgccc tgctcgcctt cggcctgcgc gggctgcacg gcctgcgcat
     1561 gtggcctcac atgccacggc tgatggccat tctcagggtg ctgcggcgcc acgccaagcg
     1621 gctgccggag caacgctggc gcctgcacgc gctgggttgc accctggcct gcgcagccgc
     1681 tggcctgacc gtgcagctgg ccggcctgca acgcggctac tggctgacgc tcgccctgat
     1741 cgccaccctg cagttggaat tccgcggcag cctggtgcgc gccctgcagc tgagcatggc
     1801 cagcctggcc gccgccggcc tgctgatcta cttcggtcac agcctgcaga gcccgccggt
     1861 gatggtcgcc atcatattgc cgctgatcat cgtcagccgg gccttccagg cccaccacta
     1921 cgggctgttc gtgctgcagg tgacggtcag cttcgtgctc ctggccgaga gcctgtcaca
     1981 tgactggcat ctggctcagg tacgcctgtt caacagcctg ataggcgttg tcctggccat
     2041 gctggtggcg ctgctgatgc acggtctgga acagtggctg aaccgccgca aggaggcctc
     2101 gcaacgctag cgttgcgact atgctttggc tctggcctgg atgtttgtcg aaggagtagg
     2161 acaatgcggg gcaagaccgg gagcaaggag cgccgtttcc cgctccatgt gcacatcagc
     2221 gtgctgttca ccctgctgct gctcggcagc ggcgcgatcc tcggcttgtt caactatcac
     2281 cagaccaccc aggtgatcct ctccagcagc aagcagctgt tccagcagat gcgcgaagag
     2341 gtggaaagcg acctgcagca gacctaccaa ccgatccgcc acctgctcgg tctgctcgcc
     2401 ctcaacgaac gcaaccccgc cggcgacagc catcagcgca tgagcctgct gccgctgttc
     2461 gcccaggccc tgcgcgacaa ccccaagctg gcggcgctgt atctgggcta cccggacggc
     2521 gacttcttca tggtgcggcc gctgcgcgat gcgcggatca agcagatctt cgacgccccg
     2581 gacagcgccg cctaccaggt ctggaccatc gaccgcagcg gcgatgcccg ccccgtgtcc
     2641 gagtcgcagt atttcgatag cgagctcaac tggatcagcc ggcgccagga gctgcgcgaa
     2701 acctacgatc cacgcagccg cggctggtac aagaacgccc gcgagcgcgg cgcgctgatc
     2761 accacagacc cttacgtgtt cttctccacc aaggacgtcg gcaccaccct cgcccgcatc
     2821 agcggcggcg acaccgtgat cggcgccgac ctgaccctgg ccgacctctc cgccaccctg
     2881 gcccgccacc gcgtcacgcc gtccaccgag gtggtgctct atcgcccgga cggcgcggcg
     2941 gtggcctatc cggacatgcg caagctggtg gtgagcaacg gcaccaccca cctggcccag
     3001 gtggaccgcc tgagccctgc actcggcgaa ctgttcgccc gcggcctcga cgaggatcgc
     3061 cagggcgcca tgcaactggc cggcagacag tggcaggtgt cctatagcca gcttgccgaa
     3121 ggcggcccca acggcctgcg cctggccctg ctggcaccgg agcaagagtt gctggccgac
     3181 gcctatcgca tccgctggca gggcgcgatg ctgaccctgg ccatcctgct gctgtgcatc
     3241 ccgctgggct ggctgatgtc gcgcatcctg gtcaagccgc tgcgcgcgct ggtgagcgag
     3301 gccgaggcga tccgcagctt cgacttctcg catccggcca gcggccgctc ggcggtgctg
     3361 gagatcgatc agctggcggt ggccatgggc aggatgaagg acaccctcgc aggtttcctc
     3421 gagatcactg ccagcctgtc cgccgagacc cgcttcgacc cactgctcag gcgcgtgctc
     3481 aaggagacgg tcgacctcag cgaggccgac gccggcctat tgttcctgcg cgacggcgaa
     3541 agcggcgcgc tggaacccca cggcctgttc atcaacgacg agcagcacag cctcgacgag
     3601 caccgcatcc ccagctaccg gccgagcgag aacattcccg aatggctgc
//
LOCUS       DATIHC010000689         1512 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13451, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000689 DATIHC010000000
VERSION     DATIHC010000689.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13451"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..961
                     /locus_tag="VLF16_11440"
     CDS             <1..961
                     /locus_tag="VLF16_11440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71534.1"
                     /translation="ALAALTLLALSAEVSAQCPDFQSPANPPGFTNPAKKKFRHFGNQ
                     VLAGLYKPWHMVHDQMVRSGQAATVTAKFDYDAVLHKDLEGEYVHAYLYGTGMSGWSY
                     LGRHTTDGDGKINVALGTRPVGEYRLRFVVEGDLSRVDGYLSVVDPSRPAVLFDIDGT
                     LTINDFEAYADYVGLKTAQAYYYAPQTVQAYRDKGYQLVFLTARPYWVTKDARQWFDY
                     QGLPQWHYRSNPYGDGPIPPDTQAHKTNYVKYLREQVGLNIVRAYGNATTDIAAYADG
                     GIPKAETWIIGQHAGESGTQPVGGDYSYHYSTVVATTPPANCN"
     gene            complement(1006..>1512)
                     /locus_tag="VLF16_11445"
     CDS             complement(1006..>1512)
                     /locus_tag="VLF16_11445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017938011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HSX71535.1"
                     /translation="LGIGAGTCVHIVAAALGMSALLATSATAFMVVKLIGAAYLLYIG
                     IGMLLAKRKEAVEPGTAELPALPYGRIFAQGFLTNVLNPKVALFFLAFVPQFISPDAE
                     HKALAFLLLGAIFNLNGMLWCHFLALSTAFAQQRLQVGRRVGLWLERCTGGLFTLLGI
                     KLALADRV"
BASE COUNT          296 a          519 c          486 g          211 t
ORIGIN      
        1 tgccctagca gctctcaccc tgctggcctt gagtgccgag gtcagcgccc aatgtcccga
       61 cttccagagc cccgccaacc cgcccggttt caccaacccg gcgaagaaga aattccgtca
      121 cttcggcaac caggtgctgg ccggcctgta caagccctgg cacatggtcc acgaccagat
      181 ggtgcgcagc ggccaggccg ccaccgtgac cgccaagttc gactacgacg ccgtgctgca
      241 caaggacctg gaaggcgagt acgttcacgc ctacctgtat ggcaccggca tgagcggctg
      301 gagctacctg ggccgccaca ccaccgacgg cgacggcaag atcaacgtgg cgctcggcac
      361 ccgtccggtg ggcgaatacc gcctgcgttt cgtggtcgag ggcgacctca gccgggtcga
      421 cggctacctc agcgtggtcg atcccagccg cccggcggtg ctgttcgaca tcgacggcac
      481 cctgaccatc aacgacttcg aggcctacgc cgactacgtc gggctgaaga ccgcgcaggc
      541 ctactactat gcgccgcaga cggtgcaggc ctaccgcgac aagggctacc agctggtatt
      601 cctcaccgcg cggccgtact gggtgaccaa ggacgcgcgc cagtggttcg actaccaggg
      661 actgccgcag tggcactacc gctccaatcc ctacggtgac ggcccgattc cgccggacac
      721 ccaggcgcac aagaccaact acgtgaagta cctgcgcgag caggtcggcc tgaacatcgt
      781 gcgcgcctac ggcaacgcca ccaccgacat cgcggcctat gccgacggcg gcattcccaa
      841 ggcggaaacc tggatcatcg gccagcacgc cggtgagagc ggcacgcagc cggtcggcgg
      901 cgactacagc tatcactaca gcaccgtggt ggcgaccacc ccgccagcca actgcaactg
      961 aaaacgaaaa aggggccatg cggccccttt tttctacccg cggcgttaca cccggtcggc
     1021 cagggccagc ttgatgccca gcagggtgaa caggccgccg gtgcaacgct ccagccacag
     1081 accgacgcgc cggccgacct gcaggcgctg ttgtgcgaac gcggtcgaca gcgccaggaa
     1141 gtggcaccag agcataccgt tgagattgaa gatggcgccc agcaggagga aggccagcgc
     1201 cttgtgttcg gcgtccgggc tgatgaactg cggcacgaag gcgaggaaga acagcgccac
     1261 cttggggttg agcacgttgg tcagaaagcc ctgggcgaag atccggccgt agggcagggc
     1321 cggcagctcg gcggtgccgg gttcgaccgc ttccttgcgc ttggccagca gcatgccgat
     1381 gccgatgtac agcagatagg ccgcgccgat cagcttgacc accatgaacg cggtggccga
     1441 ggtggcgagc agggcggaca tgcccagcgc ggcggcgacg atgtgcacgc aggtgccggc
     1501 gccgatgccc ag
//
LOCUS       DATIHC010000690         1883 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_1044, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000690 DATIHC010000000
VERSION     DATIHC010000690.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1883
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1044"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..765)
                     /locus_tag="VLF16_11450"
     CDS             complement(<1..765)
                     /locus_tag="VLF16_11450"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007927107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008955 - peptidoglycan
                     glycosyltransferase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HSX71536.1"
                     /translation="MKRQEFDRTISHEDVFKRRATLLQRLHIDGWLLLILLALCAGSL
                     FVLYSASGKNWDLVIKQGTSFGIGLVAAIVIAQFEPRFMARWVPLAYLAGVALLAVVE
                     VMGHTAMGATRWINIPGVIRFQPSEFMKIIMPATIAWYLARHNLPPKLKHIAISLVLI
                     LVPFVLILKQPDLGTALLILASGAFVLFMAGLQWRWIIGAVAAVVPVAVAMWFFVLHQ
                     YQKQRVLTFLDPESDPLGTGWNIIQSKAAIGSGGVFG"
     gene            complement(762..>1883)
                     /gene="mrdA"
                     /locus_tag="VLF16_11455"
     CDS             complement(762..>1883)
                     /gene="mrdA"
                     /locus_tag="VLF16_11455"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HSX71537.1"
                     /translation="AVVAIEPSSGDVLAMVSQPSFDPNPFVTGIGFKAYAELRDSIDR
                     PLYNRVLRGLYPPGSTIKPMVAVSGLDAGVVTPQTRVYDPGFYQLPGHSHKYRNWNRS
                     GDGSVNMEYAIMRSNDTYFYDLAHKMGVDRMHDYMSRFGLGQRVSLDMFEETAGLMPS
                     REWKRARYRQPWYPGETLILGIGQGYMQTTPLQLAQAVTLMATRGKWIRPHLLKNAED
                     MSPAELMEQDLIPHTPTPPDIQLRDPKFWDYGRIGMEMVMHGPRGTAAKVGATAAYRI
                     AGKSGTAQVVAIKQGEKYDRNKIAERHRDHALFVAFAPAEAPKIAVAVMVENGESGSG
                     VAAPVVKQVMDAWLLGPDGQLKPEYRPPVPTAEEASVQR"
BASE COUNT          311 a          627 c          637 g          308 t
ORIGIN      
        1 gccgaacaca ccgccggaac cgatggccgc cttggactgg atgatgttcc agccggtgcc
       61 cagcggatcg ctttcgggat cgaggaaggt cagcacccgc tgcttctgat actgatgcag
      121 cacgaagaac cacatggcca cggcgaccgg caccacggcc gccaccgcgc cgatgatcca
      181 gcgccactgc aggccggcca tgaacagcac gaacgcgccg gaggcgagga tcagcagcgc
      241 ggtgcccagg tccggctgtt tcaggatcag cacgaagggc accaggatca gcaccaggct
      301 gatggcgatg tgcttgagct tgggcggcag gttgtgccgg gccaggtacc aggcgatggt
      361 cgccggcatg atgatcttca tgaattccga cggctggaag cggatcaccc cgggaatgtt
      421 gatccagcgg gtcgcgccca tggcggtatg acccatcacc tccaccaccg cgagcagcgc
      481 caccccggcc agataggcca gcggcaccca gcgcgccatg aagcgcggct cgaactgggc
      541 gatgacgatg gcggcgacca ggccgatgcc gaaggaggtg ccctgcttga tcaccaggtc
      601 ccagttcttg ccgctggccg aatagaggac gaacaggctg ccggcgcaca gagccagcag
      661 gatcagcagc agccagccgt cgatgtgcag gcgctgcagc agcgtggcgc ggcgcttgaa
      721 cacgtcctcg tgggaaatgg tgcggtcgaa ctcctggcgc ttcatcgctg cacgctggcc
      781 tcttctgcag tcggcaccgg cggacggtac tcgggtttga gctggccgtc cgggcccagc
      841 agccaggcgt ccatcacctg cttgaccacc ggcgcggcga cccccgagcc ggactcgccg
      901 ttctccacca tcaccgccac ggcgatcttc ggcgcctcgg ccggggcgaa ggcgacgaac
      961 agcgcgtggt cgcggtggcg ctcggcgatc ttgttgcggt cgtacttctc gccctgcttg
     1021 atcgccacca cctgcgccgt accgctcttg ccggcgatgc ggtatgcggc cgtggcgccg
     1081 accttggcgg cggtgccgcg cggaccgtgc atcaccatct ccatgccgat gcgcccgtaa
     1141 tcccagaact tgggatcgcg cagctggatg tccggcggcg tcggcgtatg cgggatcagg
     1201 tcctgctcca tcagctcggc ggggctcatg tcctcggcgt tcttcagcag gtgcgggcgg
     1261 atccatttgc cgcgcgtggc catcagcgtc accgcctggg ccagctgcag cggcgtggtc
     1321 tgcatgtagc cctggccgat gccgaggatc agcgtctcgc ccggatacca gggctggcgg
     1381 tagcgcgcgc gcttccattc gcgcgacggc atcaggccgg ccgtctcctc gaacatgtcc
     1441 agcgacaccc tctggcccag gccgaagcgg ctcatgtagt cgtgcatgcg atccacgccc
     1501 atcttgtggg cgaggtcgta aaagtaggtg tcgttggagc gcatgatcgc gtactccatg
     1561 ttcaccgagc cgtcgcccga gcggttccag ttgcggtatt tgtggctgtg gccgggcaac
     1621 tggtagaagc cgggatcgta gacccgcgtc tgcggcgtca ccacgccggc atccaggccg
     1681 gataccgcga ccatcggctt gatcgtcgaa cccggcgggt acaggccgcg cagcacccgg
     1741 ttgtagagcg ggcggtcgat ggagtcgcgc agctcggcat aggccttgaa gccgatgccg
     1801 gtgacgaagg ggttagggtc gaagctgggc tggctgacca tcgccagcac atcgccgctg
     1861 gacggctcga tcgccaccac cgc
//
LOCUS       DATIHC010000691         1793 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_20620, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000691 DATIHC010000000
VERSION     DATIHC010000691.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1793)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1793)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1793
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20620"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..665)
                     /locus_tag="VLF16_11460"
     CDS             complement(<1..665)
                     /locus_tag="VLF16_11460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016494483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide isomerase DsbC N-terminal
                     domain-containing protein"
                     /protein_id="HSX71538.1"
                     /translation="MSVIRLLGGAVLGLAASVALAADPDQAIRATLTKLQPDMPIEAI
                     AESPMTGLYQVHLKGGRLLYASADGQFLMQGNLYQMKGDEALNLTRQAESKGVAKEIN
                     GIPASDMVVFSPKEPAKAHITVFTDTDCGYCQKLHSEVPELNRRGIEVRYVAFPRQGL
                     GSHGYNSLVSVWCAKDRQEAMNKAKAREDLPSASCANPVAKQYELGQMIGVNGTPAIV
                     LGNG"
     gene            complement(966..>1793)
                     /gene="xerD"
                     /locus_tag="VLF16_11465"
     CDS             complement(966..>1793)
                     /gene="xerD"
                     /locus_tag="VLF16_11465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009009 - site-specific recombinase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HSX71539.1"
                     /translation="PHTRAAYRSDLGHFHAWLQERGGDLQHAGRDSILDHLGWRLEQG
                     YKARSTARLLSGMRGFYRYLLRDGLIAEDPTLQIDLPQIGRPLPKSLSEADVEALLAA
                     PDLDDPIGLRDRAMLEVLYACGLRVTELVSLTLEQVNLRQGVLRVFGKGSKERLVPLG
                     EEAIAWVERYLREARSLLLSGKPSDVLFPSLRGEQMTRQTFWHRIKHQARAACIDKPL
                     SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQELHAQHHPRG"
BASE COUNT          276 a          579 c          632 g          306 t
ORIGIN      
        1 ccattgccga ggacgatggc cggggtgccg ttgacgccga tcatctggcc cagttcgtac
       61 tgcttggcga ccggattggc gcagctggcc gacggcaggt cctcgcgggc cttggccttg
      121 ttcatggcct cctgacggtc cttggcgcac cagacgctga ccaggctgtt gtagccgtgg
      181 ctgcccagac cctggcgcgg gaacgccacg tagcgcactt cgatgccgcg gcgattgagc
      241 tccggtacct cgctgtgcag cttctggcag taaccgcagt cggtgtcggt gaatacggtg
      301 atgtgtgcct tggccggctc cttgggcgag aacaccacca tgtcgctggc cggaatgccg
      361 ttgatttctt tggccacgcc cttgctctcg gcctgacggg tcaggttgag ggcctcgtca
      421 cccttcatct ggtacaggtt gccctgcatc aggaactggc cgtcggcgct ggcgtagagc
      481 aggcggccac ccttgaggtg cacctgatag agaccggtca tcgggctttc ggcgatggcc
      541 tcgatgggca tgtcgggttg cagcttggtc agggtggcgc ggatggcctg atcgggatcg
      601 gcggccagag caacggaagc ggcgagaccc aaaacggcgc cgcccagcag acgaataacg
      661 gacatggaat gctcctgtga cagtggccca agcctaccac agccgctctg cgccgccgac
      721 cgcggacgcc gggcgggacc gggaggcgga tgagctgcat gaagcaatcg ctcgacgatg
      781 cctcgctgta tgccgcctgc ctctgctctc acaacctcgg cgctggccgc gttcgccttt
      841 gcgacgcgag cggcgaaagt gcttcgtgta gacgtccctg tcgcaacacc gcggcgctgc
      901 cataccccgg ccccgccatc catggcgggg cgttcgcctt tgcgacgcag tgcgtcgcaa
      961 caggctcacc ccctcgggtg gtgttgggcg tggagttcct gcagccgtgc gcgggcgatg
     1021 tgggtgtaga tctgggtagt ggatagatcg ctgtggccca gcagcatctg caccacccgc
     1081 aggtcggcgc catggttgag caggtgggtg gcgaaggcgt ggcgcaacgt gtgcggcgac
     1141 aggggtttgt cgatacaggc cgcccgggcc tggtgcttga tgcggtgcca gaaggtctgc
     1201 cgggtcatct gctcgccgcg caggctggga aacagcacgt cgctgggctt gccggagagc
     1261 agcagcgagc gggcctcgcg caggtagcgc tcgacccagg cgatggcctc ctcgcccagc
     1321 ggcaccaggc gctccttgct gcccttgccg aacacccgca gcacgccctg gcgcaggttg
     1381 acttgctcca gggtcagcga caccagctcg gtcacgcgca gaccgcaggc gtagagcacc
     1441 tcgagcatgg cgcggtcgcg caggccgatg ggatcgtcca ggtccggcgc cgccagcagg
     1501 gcctcgacgt ccgcctcgga cagcgacttg ggcagcggcc ggccaatctg cggcagatcg
     1561 atctgcagcg tcggatcctc ggcgatcagc ccgtcgcgca acaggtagcg gtagaagccc
     1621 cgcatgcccg agagcaggcg cgcggtggaa cgcgccttgt agccctgctc caggcgccag
     1681 ccgagatggt cgagaatact gtcgcgccca gcatgctgca gatcgccgcc gcgctcctgc
     1741 agccaggcgt ggaagtggcc gaggtcgctg cgataggcgg cacgggtatg ggg
//
LOCUS       DATIHC010000692         2116 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13469, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000692 DATIHC010000000
VERSION     DATIHC010000692.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2116
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13469"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..962
                     /locus_tag="VLF16_11470"
     CDS             <1..962
                     /locus_tag="VLF16_11470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="putative PEP-binding protein"
                     /protein_id="HSX71540.1"
                     /translation="RRLPLWVNTGLLADVKRAQERGAEGVGLYRTEVPFMNGERFPSE
                     KEQLATYREQLAAFHPLPVTMRTLDIGGDKALSYFPIKEENPFLGWRGIRITLDHPEI
                     FLVQVRAMLKASEGLDNLRILLPMISGTQEMEEALHLIHRAWGEVRDEGVDIPMPPVG
                     LMIEIPAAVYQVRELARQVDFLSVGSNDLTQYLLAVDRNNPRVADLYDFLHPAVLHAL
                     RLVVDGAHAEGKPVSICGEMAGDPAAAVLLLAMGFDSLSMNATNLPKVKWLLRQISST
                     RAKELLDQLMTIDNPQVIHSTLHLALRNLGLGRVINPAAAIQS"
     gene            complement(991..2019)
                     /locus_tag="VLF16_11475"
     CDS             complement(991..2019)
                     /locus_tag="VLF16_11475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017938114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSX71541.1"
                     /translation="MYPSADLAPLSQSATLRRLLYEALSELGHEPATIYRGANQYRRL
                     LPPPSEGRLSHDEAPLFWQAADALTGDADIGLHLGEVMKPRLLDVVGYLLLASRDLQQ
                     AVDSFLRFQHILAGGLAAQLRVEGERACLVLDINYRGFGPLRQQMECLVLLFIKLLRL
                     ISDGEFRPLAVQFRHARPRKLTEHRRLLGLQPDFGCAHDALWFPASQLRRPSRNANPE
                     LHRLLWQHAEAQLAALVENDLLNRLRYLLDLRLGRTDCSLRACAAELGLESSALQRGL
                     AAQGASLRQVREAVQQARAQELLQAGESIREMARACGFAELSPFYRAFKRWYGVTPDV
                     YRGKMAGE"
BASE COUNT          367 a          767 c          685 g          297 t
ORIGIN      
        1 gccgccgcct gccgctgtgg gtcaacaccg gcctgctggc cgacgtgaag cgcgcccagg
       61 aacgcggcgc cgaaggcgtc ggcctgtacc gcaccgaagt gccgttcatg aacggcgagc
      121 gcttccccag cgagaaggaa cagctggcca cctaccgcga gcagttggcc gccttccacc
      181 cgctgccggt gaccatgcgc accctggaca tcggcggcga caaggccctg tcctacttcc
      241 cgatcaagga agaaaacccc ttcctcggct ggcgcggcat ccgcatcacc ctcgaccacc
      301 cggagatctt cctggtccag gtacgcgcca tgctcaaggc cagcgaaggc ctggacaacc
      361 tgcgcatcct cctgccgatg atctccggca cccaggagat ggaagaggcc ctgcacctga
      421 tccaccgcgc ctggggcgag gtgcgcgacg agggcgtgga catccccatg ccgcccgtgg
      481 gcctgatgat cgagatcccc gccgccgtct accaggtgcg cgagctggcg cgccaggtcg
      541 acttcctgtc ggtcggctcc aacgacctga cccagtacct gctggccgtg gaccgcaaca
      601 acccgcgggt cgccgacctc tacgacttcc tccacccggc ggtgctgcac gcgctgcgcc
      661 tggtggtcga cggcgcccac gccgaaggca agccggtgag catctgcggc gaaatggccg
      721 gcgacccggc ggccgccgtg ctgctgctgg ccatgggctt cgactcgctg tcgatgaacg
      781 ccaccaacct gcccaaggtg aagtggctgc tgcgccagat cagctccacc cgcgccaagg
      841 agctgctcga ccagctgatg accatcgaca acccgcaggt catccacagc accctgcacc
      901 tggccctgcg caacctcggc ctgggccggg tgatcaatcc ggcggcggcg atccagagct
      961 gaacgcgcgc ttcataaccg cgcacaagag ctattcgccc gccatcttcc cccgatagac
     1021 atccggcgtg acgccgtacc agcgcttgaa cgcccggtag aacggcgaca gctcggcgaa
     1081 gccgcaggcc ctcgccatct cgcgaatcga ctccccggcc tgcagcagct cctgcgccct
     1141 cgcctgctgt accgcctcgc gcacctggcg caggctggcg ccctgagcgg ccaggccgcg
     1201 ctgcagcgca ctcgactcca gccccagctc ggcggcgcag gcgcgcagcg agcagtccgt
     1261 ccggcccagg cgcagatcga gcagataacg cagccggttg agcaagtcgt tttccaccag
     1321 cgccgccagc tgcgcctcgg cgtgctgcca gagcaggcgg tgcagctccg gattggcatt
     1381 gcgcgagggg cgcctgagct gactggccgg gaaccacagc gcgtcgtggg cacagccgaa
     1441 gtccggctgc agccccagca ggcggcgatg ctcggtcagc tttctcggcc gggcatggcg
     1501 gaactgcacc gccagcggac ggaactcgcc atcgctgatc agccgcagca gcttgatgaa
     1561 cagcagcacc agacactcca tctgctggcg cagcgggccg aagccgcggt agttgatgtc
     1621 cagcaccagg catgcgcgct cgccttcgac ccgcagctgc gcggcgagac cgccggcgag
     1681 gatgtgctgg aagcgcagga agctgtccac cgcctgctgc aggtcgcgac tggccagcag
     1741 caggtagccg accacatcga gcagacgcgg cttcatcacc tcgcccaggt gcaggccgat
     1801 gtcggcatcg ccggtcaggg cgtcggcggc ctgccagaac agcggcgcct cgtcgtggct
     1861 gaggcggcct tcgctgggcg gcggcagcaa gcggcggtac tggttggcgc cgcgatagat
     1921 cgtcgccggc tcatgaccga gctcgctcaa tgcctcgtac agcaagcgcc gtaaggtggc
     1981 ggattggctc agcggggcga gatcggcgga cgggtacatg gcggctcctc ggattgaccg
     2041 aagaattcca gccccacggt cagcggtcaa tgccgctggt taaagcactg cgcagaatgg
     2101 ccgcacaaca acaagg
//
LOCUS       DATIHC010000693         4336 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_26681, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000693 DATIHC010000000
VERSION     DATIHC010000693.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4336
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26681"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(253..561)
                     /locus_tag="VLF16_11480"
     CDS             complement(253..561)
                     /locus_tag="VLF16_11480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013983721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71542.1"
                     /translation="MELNKAVLDCMQSLRRRLREEMSLDIRLSQPDAVEAMLLACLRS
                     NDQDTRHLGIRLAELSDTASTPSTPQRGPESPAPAPAITEDGTRGPSVRMYRGQRVYA
                     "
     gene            790..1614
                     /locus_tag="VLF16_11485"
     CDS             790..1614
                     /locus_tag="VLF16_11485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003111343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HSX71543.1"
                     /translation="MRNDAHDELDHVPSLTTDPRDRDDFQAGHAEHSHKPHRSAPTYP
                     QVERRRGFGTGPLWALIGALVIALAGLSWWSFQQVAQMQAQLVVTQETFARISEEAAG
                     RIQDISGKVVATESNVTSDSEALKLRVKQLETKLAEVTKQQQNLNGQQSGQGKRVEQL
                     AADLKSQQGTVAQFDGRLDQLAAEQKTGLAGVGKLQEQLKGQASAIEALKKKEDPSQS
                     IRSLEQDLLVLRSELENRPAPQNNTAEFDAFRAQVTRNINGLQAQVQNLQQQLNAR"
     gene            complement(1670..2257)
                     /locus_tag="VLF16_11490"
     CDS             complement(1670..2257)
                     /locus_tag="VLF16_11490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017675028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycolipid-binding domain-containing
                     protein"
                     /protein_id="HSX71544.1"
                     /translation="MQQNLVWKPWTNPGIEHLSLAIGNDGVSASGQLIQSIRGNSIAA
                     TYLLAYDERWRFRRLWLKVDNHGQRTLELRRDIRGHWHLNGQLRDDLGDCQQVMLSAS
                     PFTHSPLLRPGLLETGDSERFRVAHVDLLGLRVEARSQRYQCLQHHASHAVYRCEAEG
                     HEPCELTLDEAGLLVQGIGQFIRTSRQTLRHAHCA"
     gene            complement(2382..2720)
                     /locus_tag="VLF16_11495"
     CDS             complement(2382..2720)
                     /locus_tag="VLF16_11495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HopJ type III effector protein"
                     /protein_id="HSX71545.1"
                     /translation="MTLQDFRARLHGEQFQFAETLAFVAEHYDYQPSAFRNGSVDNAS
                     GQNEGSCKTLGLALLEDFSLEETLRAFGEHFRAVLANPAGNDHANIRALQDTGLGGVH
                     FEHQPLKRKA"
     gene            complement(2717..3013)
                     /locus_tag="VLF16_11500"
     CDS             complement(2717..3013)
                     /locus_tag="VLF16_11500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003260708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1244 domain-containing protein"
                     /protein_id="HSX71546.1"
                     /translation="MTEQQRLELEAAAFRRLVGHLRERTDVQNIELMNLAGFCRNCLS
                     KWYKAAADEQGVAVDMEQAREVVYGMPYAEWKAQYQKEATAEQLAAFDKGNPQR"
     gene            complement(3187..3558)
                     /gene="folX"
                     /locus_tag="VLF16_11505"
     CDS             complement(3187..3558)
                     /gene="folX"
                     /locus_tag="VLF16_11505"
                     /EC_number="5.1.99.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004150 - dihydroneopterin aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006760 - folic acid-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate 2'-epimerase"
                     /protein_id="HSX71547.1"
                     /translation="MPRLEPGMARIRVKDLRLRTYIGIKEEEINNKQDVLINLTILYP
                     ADTAVQVNDIEHALNYRTITKAVIRHVEENRFALLERLTQEILDLVMAHPAVRYAEVE
                     VDKLHALRFAESVSITLAAHR"
     gene            complement(3625..4332)
                     /gene="folM"
                     /locus_tag="VLF16_11510"
     CDS             complement(3625..4332)
                     /gene="folM"
                     /locus_tag="VLF16_11510"
                     /EC_number="1.5.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003230832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydromonapterin reductase"
                     /protein_id="HSX71548.1"
                     /translation="MTAPAPILITGAGQRLGLHCALRLLDEGQPVIFSYRSEREGVTL
                     LRERGALGLQADFSGQAGILDFIDQVKGHTEHLRAIVHNASDWETETPGHEAEVFQRM
                     VSVHMLAPYLINLHCEALLRHGGPADIVHLGDDVTAKGSAKRPAYCASKAGLDSLTLS
                     FAARFAPKIKVNGIAPALIQFNEGDSAEYRARRLAETPLGFEPGAEVVYQSLRYLLDN
                     PYVTGTTVTVNGGRHLR"
BASE COUNT          680 a         1370 c         1538 g          748 t
ORIGIN      
        1 gaactcgcgc atcacctgcg ccggctgcag cgtcggctca tgctcggcgg cgatccacag
       61 ggccgcttcg agcagcgcgg gcgggtccga ttccaggcag gtcagccagg cggggcgagc
      121 agtcatgcgg tttctccgtg acgagacgcg tagctgacta ttagccgtct gggtcggact
      181 cgtccagtca ttcacgcaac ggcgaatcgc gcgagcgaaa aacccgctcc acgaaggagc
      241 gcgtcgggcg gctcaggcgt agacgcgctg gccgcggtac atccgtacgg aaggtccacg
      301 ggttccgtct tcggtgattg caggcgcagg agcaggcgac tccgggccgc gctgcggcgt
      361 ggacggtgtg ctggccgtgt cgctcagctc ggccagacga atgcccaggt ggcgggtgtc
      421 ctggtcgttc gagcgcaggc aggccagcaa catggcctcc accgcgtcgg gctgactcag
      481 gcggatgtcc agcgacattt cctcgcgcag gcgtcggcgc agcgactgca tgcaatccag
      541 aacggctttg ttcagttcca tgtccgcttc ctcgtgtcgg tggctgaccc gcaatcactc
      601 gaccaagtcg tagcaaggcg cgtaccagcg acgccgggcc gcgaactgtg aggtacttca
      661 cgtgtcccat gggcaaccgg ttgcccgccg ctggtgcgct tcgcaccgcg ctggcgcccg
      721 ctgaaggcgg agcggctaac cgggtatact gcccgccacc tgtccgcctt tcgcattttg
      781 aaggttccta tgcgcaacga cgcccacgac gagctggacc acgtccccag cctgaccacc
      841 gacccgcgcg accgcgacga cttccaggcc ggtcacgccg agcactccca caagccgcac
      901 cgtagcgcgc cgacctatcc gcaggtcgag cgccgccgcg gcttcggcac cggcccgctg
      961 tgggccctga tcggtgccct ggtcatcgct ctggcagggc tgagctggtg gagcttccag
     1021 caggtcgcgc agatgcaggc gcaactggtg gtgacccagg agaccttcgc ccgcatcagc
     1081 gaggaagccg ccgggcgcat ccaggacatc tccggcaagg tggtcgccac cgagtccaac
     1141 gtcaccagcg acagcgaagc ccttaagctg cgcgtcaagc agctcgagac caagctggcc
     1201 gaagtgacca agcagcagca gaacctcaac ggccagcaga gcggccaggg caagcgcgtc
     1261 gagcagttgg ccgccgacct gaagagccag cagggcaccg tcgcccagtt cgacggcagg
     1321 ctggaccagc tggccgccga gcagaagacc gggctggccg gtgtcggcaa gctgcaggag
     1381 caactcaagg gccaggcctc ggccatcgag gcgctgaaga agaaggaaga cccgagtcag
     1441 tcgatccgca gcctggagca ggatctgctg gtactgcgca gcgagctgga gaaccgtccg
     1501 gcgccgcaga acaacaccgc cgagttcgac gccttccgcg cccaggtgac ccgcaatatc
     1561 aacggcctgc aggcccaggt gcagaacctg cagcagcagc tcaacgctcg ctgaagaccg
     1621 ccgtgtcgaa aagccccgct tcggcggggc ttttttatgc tttggcgcct caggcgcagt
     1681 gggcgtggcg cagggtctgc cggctggtgc ggatgaactg gccgattccc tgcaccagca
     1741 gcccggcctc gtccaaggtc agttcgcagg gctcgtggcc ttccgcttcg caccggtaaa
     1801 cggcgtggct ggcgtggtgc tgcaggcatt ggtagcgctg gctgcgcgcc tccacccgca
     1861 ggccgagcag gtcgacatgg gcgacgcgga agcgctcgct gtcgccggtt tccagcaggc
     1921 cggggcgcag tagcgggctg tgggtgaagg gcgaggcgga gagcatgacc tgctggcagt
     1981 cgccgaggtc gtcgcgcagc tggccgttga ggtgccagtg gccgcggatg tcgcgacgca
     2041 gctccagggt gcgttgaccg tggttgtcga ccttcagcca caggcggcgg aagcgccagc
     2101 gttcgtcgta ggcgagcagg taggtggcgg cgatgctgtt gccgcggatg ctctggatca
     2161 gctggccgct ggcgctgacg ccgtcgttgc cgatggccag gctgaggtgc tctattccgg
     2221 gattggtcca gggcttccag accaggttct gctgcatcct tgcactcctt tgctcaaggt
     2281 gggccggcat cctgccagcg cgcaacggag aaggagttta aggcggacgc tgcgcagtgt
     2341 ctgtcagcca aagccgacag ctgcgcagcg agttgcgcag ttcaggcctt gcgcttgagc
     2401 ggctggtgct cgaaatgcac gccgcccagg ccggtgtcct gcagggcgcg gatgttggcg
     2461 tggtcgtttc cggccgggtt ggccagcacg gcgcggaagt gctcgccgaa ggcgcgcagg
     2521 gtctcttcca ggctgaagtc ttccagcagc gccaggccga gggtcttgca ggagccctcg
     2581 ttctgcccgg aggcgttgtc caccgagccg ttgcggaagg cgctgggctg gtagtcgtag
     2641 tgctcggcga cgaacgccag ggtctcggcg aactggaact gctcgccgtg caggcgggcg
     2701 cgaaagtctt gcagggtcat cgttgcgggt ttcctttgtc gaaggccgcc agctgctcgg
     2761 cggtggcttc cttctggtat tgggctttcc actcggcgta gggcatgccg tagacgactt
     2821 cgcgggcctg ctccatgtcg acggccacgc cctgctcatc ggcggcggcc ttgtaccact
     2881 tggataggca gttgcggcag aagccggcga ggttcatcag ctcgatgttc tgcacgtcgg
     2941 tgcgttcacg caggtgcccg accaggcggc ggaaggcggc ggcttcgagc tcgaggcgtt
     3001 gttgttcggt catacaggct ccttgtcatc ggaagcggat tcaaagtctc gcgagctaga
     3061 gtcaggctag gcctcggcgg ccccgcgtaa aggggcgagg gcgcggagtt tacatgacgt
     3121 aaacgagcac ccgaggccct tttccaacga cgcatggccg acgcgcagca gactttgggc
     3181 cgcttttcag cggtgggccg cgagggtgat ggataccgac tcggcgaagc gcagcgcgtg
     3241 caatttgtcc acctcgacct cggcgtagcg caccgccggg tgggccatca ccagatcgag
     3301 gatttcctgg gtcaggcgct cgagcagggc gaagcggttt tcctcgacgt gacggattac
     3361 cgccttggtg atggtgcggt agttcagggc gtgctcgatg tcgttgacct gcaccgccgt
     3421 gtcggccggg tagaggatgg tgaggttgat cagcacgtcc tgcttgttgt tgatctcctc
     3481 ttccttgatg ccgatgtagg tgcgcaggcg caggtccttg acccggatgc gcgccatccc
     3541 aggttccagt cgcggcatgg gtaagctccg tcgatcgttg cgaatgtcat cggcgcgtgc
     3601 gccgggcgcc cagcataacc gcgctcagcg cagatgacga ccgccgttga ccgtcacggt
     3661 ggtgccggtg acgtaggggt tgtccagcag gtagcgcagg ctctggtaga ccacctcggc
     3721 gcccggctcg aagcccagcg gggtctcggc caggcgcctg gcgcggtatt cggcgctgtc
     3781 gccttcgttg aactggatca gcgccggggc gatgccgttg accttgatct ttggtgcgaa
     3841 gcgcgcggcg aaggacaggg tgaggctgtc cagccccgcc ttgctggcgc agtaggccgg
     3901 gcgcttggcg ctgcccttag ccgtcacgtc gtcgcccagg tggacgatgt ccgccgggcc
     3961 gccgtggcgc agcagcgcct cgcagtgcag gttgatcagg tagggcgcca gcatgtgcac
     4021 gctgaccatg cgctggaaca cctcggcctc gtggccgggg gtttccgtct cccagtcgga
     4081 ggcgttgtgg acgatcgcgc gcaggtgctc ggtgtggcct ttcacctggt cgatgaagtc
     4141 caggatgccg gcctggccgg agaaatccgc ctgcaggccg agggcgccgc gctcgcgcag
     4201 cagggtcacg ccctcgcgtt cgctgcggta gctgaagatc accggctggc cctcgtcgag
     4261 caggcgcagc gcgcagtgca ggccgaggcg ctggccggcg ccggtgatca ggatgggggc
     4321 tggggcggtc atgcgc
//
LOCUS       DATIHC010000694         1520 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29963, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000694 DATIHC010000000
VERSION     DATIHC010000694.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29963"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..241
                     /locus_tag="VLF16_11515"
     CDS             <1..241
                     /locus_tag="VLF16_11515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014852343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HSX71549.1"
                     /translation="AMVSTSFADFLAVNEALTAAGYKGEEAEVAMIPSTMAPIADLET
                     AKKVLKLIDMLEDLDDVQNVYHNAEIPDEIMEQLD"
     gene            380..904
                     /gene="ruvC"
                     /locus_tag="VLF16_11520"
     CDS             380..904
                     /gene="ruvC"
                     /locus_tag="VLF16_11520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012702193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HSX71550.1"
                     /translation="MTLILGIDPGSRITGYGVVRDTGRGCEYVASGCIRTGDGDLASR
                     LQVVFRGVSEVIRQHGPVTMGIEQVFMAKNADSALKLGQARGAAIVASIEAGLDVNEY
                     TASQVKQAIAGTGGADKQQVQMMVMHLLKLVQKPQIDASDALAIALCHAHHRQSLIPH
                     NLLGAKRRSGRLRL"
     gene            922..>1520
                     /gene="ruvA"
                     /locus_tag="VLF16_11525"
     CDS             922..>1520
                     /gene="ruvA"
                     /locus_tag="VLF16_11525"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HSX71551.1"
                     /translation="MIGRLKGTLAEKQPPHMILDVNGVGYEVEVPMTTLYRLPAVGQP
                     VTLHTHLVVREDAHLLYGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCV
                     QAQDTSTLVKIPGVGKKTAERLLVELKDRFKAWETMPSIAPLVVEPRAGVAVSSAESD
                     AVSALISLGFKPQEASKAVAAIQEEGLSSEELIRRALKG"
BASE COUNT          287 a          485 c          504 g          244 t
ORIGIN      
        1 ggccatggtc tcgaccagct tcgccgactt cctcgcggtg aacgaggcgc tgaccgcggc
       61 cggctacaag ggcgaggagg ccgaggtggc gatgattccc tcgaccatgg cgccgattgc
      121 cgacctggag accgccaaga aggtgctcaa gctgatcgac atgctcgagg acctggacga
      181 cgtgcagaac gtctaccaca acgcggaaat tcccgacgag atcatggagc agctcgactg
      241 atcccttctc gtaggcagaa aagccggaag tcgcctcacg cgcttccggc ttttttatag
      301 gcgcggcgct ccgtatactc gcggctggat aaatagacag tgtgccggcc ctcgggttgg
      361 cgttggagca agcggcggca tgaccctgat tcttggcatc gaccccggct cgcgcatcac
      421 cggctacggc gtggtgcgcg acaccgggcg cggctgcgag tatgtcgcct ccggctgcat
      481 ccgcaccggc gacggcgacc tggccagccg gttgcaggtg gtgtttcgcg gagtcagcga
      541 ggtgatccgt cagcacgggc cggtcaccat gggcatcgag caggtgttca tggccaagaa
      601 tgccgattcg gcgctcaagt tggggcaggc ccgcggcgcc gccatcgtcg ccagcatcga
      661 ggccgggctg gacgtcaacg agtacaccgc cagccaggtc aagcaggcca tcgccggcac
      721 cggtggcgcc gacaagcaac aggtgcagat gatggtgatg cacctgctca agctggtgca
      781 gaagccgcag atcgatgcct ccgatgccct ggccatcgcc ctctgtcacg cccatcaccg
      841 gcagagcctg attccccata acctgctcgg cgccaagcgc cgcagcgggc gcctgcgcct
      901 gtaaacagaa ggaagcgaat tgtgatcgga cgcctcaagg gcaccctggc ggagaagcag
      961 ccgccgcaca tgatcctcga cgtcaatggc gtcggctacg aagtggaagt gccgatgacc
     1021 acgctctatc ggttgcccgc cgtagggcag ccggtcaccc tgcacaccca tctggtggta
     1081 cgtgaagatg cgcatctgct ctatggcttc gccgagaagc gcgagcgcga gctgttccgc
     1141 gagctgatcc gcctcaatgg tgtcggcccc aagctggctc tggcgctgat gtccggcctg
     1201 gaagtggacg agctggtgcg ctgcgtgcag gcccaggaca cctcgaccct ggtgaaaatc
     1261 cctggcgtcg gcaagaagac cgccgagcgc ctgctggtgg aactcaagga tcgcttcaag
     1321 gcctgggaga ccatgccatc catcgcgccg ctggtggtgg aaccccgcgc cggcgtggca
     1381 gtctcaagcg cggagagcga cgccgtgagc gcgctgatct cgctcggctt caagccgcag
     1441 gaggccagca aggccgtggc ggccatacag gaagaagggc tgtccagcga agagctgatc
     1501 cgccgtgccc tgaaaggaat
//
LOCUS       DATIHC010000695         2442 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_9074, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000695 DATIHC010000000
VERSION     DATIHC010000695.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2442)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2442)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2442
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9074"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1234
                     /locus_tag="VLF16_11530"
     CDS             <1..1234
                     /locus_tag="VLF16_11530"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HSX71552.1"
                     /translation="FYFLADYHALIKCDDPARIQRSRLEIAATWLALGLDTDKATFYR
                     QSDIPEIPELCWLLTCVAGKGLLNRAHAYKASVDKNVEQGEDPDAGVTMGLFSYPVLM
                     AADILMFNAHKVPVGRDQIQHVEMARDIGQRFNHLFGAGKELFTLPEAVIEEEVATLP
                     GLDGRKMSKSYDNTIPLFGSAKQLKEAIARIVTDSKLPGEPKDADGSHLFTLYQAFAT
                     QAQQAEFRAELEGGLAWGEAKNRLYQLLENELGEARERYNALIAKPADLEDILLAGAA
                     KARRIATPFLGELREAVGLRSFREQVQSASGEKKKAAKSARFVSFRDDDGSFRFRLLD
                     AAGEQLLLSKSFADGKAAGQASKRLQSGETLDVRAEGQAFSVWLDGESVGNSPAFADA
                     AALDVAIARLREALAPQE"
     gene            1311..2405
                     /gene="zapE"
                     /locus_tag="VLF16_11535"
     CDS             1311..2405
                     /gene="zapE"
                     /locus_tag="VLF16_11535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapE"
                     /protein_id="HSX71553.1"
                     /translation="MTPLERYQADLKRPDFFYDAAQENAVRHLQRLYDDLVSESQSSS
                     GLLGKLFGKKRQAPVRGLYFWGGVGRGKTYLVDTFFDALPFEQKMRTHFHRFMKRVHE
                     EMKTLKGEKNPLTIIGKRFADEARVICFDEFFVSDITDAMILATLLEELFKNGVSLVA
                     TSNIVPDGLYKDGLQRARFLPAIALLKEHTEIVNVDSGVDYRLRALEQAELFHFPLGP
                     AAEESLQKSFRSLLPDCQHMVENEALTIENRTINAVRVCEDVAWFEFRELCDGPRSQN
                     DYIELGKLFHAVILANVEQMSVAKDDMARRFINLVDEFYDRNVKLIISAEVELKDLYS
                     GGRLNFEFQRTLSRLLEMQSHEFLSRPHRP"
BASE COUNT          455 a          812 c          780 g          395 t
ORIGIN      
        1 cttctatttc ctcgccgact accacgcact gatcaagtgc gacgacccgg cgcgtatcca
       61 gcgttctcgc ctggagatcg ccgccacctg gctggcgctg gggctggata ccgacaaggc
      121 gaccttctat cgccagtccg acatccccga gattcccgaa ctgtgctggc tgctcacctg
      181 cgtcgccggc aagggcctgc tcaaccgcgc gcatgcctac aaggcctcgg tggacaagaa
      241 cgtcgagcag ggcgaagacc cggacgccgg cgtgaccatg ggcctgttca gctacccggt
      301 gctgatggcg gcggacatcc tgatgttcaa cgcgcacaag gtgccggtcg gccgcgacca
      361 gatccagcac gtggagatgg cgcgcgatat cggtcagcgc ttcaaccacc tcttcggtgc
      421 aggcaaggag ctattcaccc tgcccgaagc ggtgatcgag gaagaagtgg cgaccctgcc
      481 cggcctcgac ggccgcaaga tgagcaagag ctacgacaac accatcccgc tgttcggcag
      541 tgccaagcag ctgaaggagg cgattgcgcg catcgtcacc gactccaaac tgccgggcga
      601 gccgaaggac gccgacggct cgcacctgtt caccctgtac caggcctttg ccacccaagc
      661 ccagcaggcg gagttccgtg ccgagctgga aggcggcctg gcctggggcg aggcgaagaa
      721 tcgcctgtac caactgctgg aaaacgaact gggcgaggct cgcgagcgtt acaacgcgct
      781 gatcgccaag ccggccgacc tggaagatat cctcctggcc ggcgctgcca aggcgcgcag
      841 gatcgccacg ccgttcctcg gcgagctgcg cgaggccgtg ggcctgcgct ccttccgcga
      901 gcaggtgcag agcgcctccg gcgagaagaa aaaggcggcc aagagcgcgc gcttcgtcag
      961 cttccgcgac gacgacggca gcttccgctt ccgcctgttg gacgccgccg gcgagcagct
     1021 gctgctgtcg aaatcctttg ccgacggcaa ggccgccggc caggccagca agcgcctgca
     1081 gtccggcgag acgctggatg tgcgcgccga gggccaggcc ttctccgtgt ggctggatgg
     1141 cgaatcggtc ggcaatagtc cggcctttgc cgacgccgcc gctctggatg tcgccattgc
     1201 ccgcctgcgc gaggcgctcg ccccgcagga atgacgcgca cggcgtgatt gccaagcaac
     1261 ggggccgtcg ctaaagtgac cgccccgttt ttgttaccga agttcccaga atgacccctc
     1321 ttgagcgcta tcaggccgat ctgaagcggc cggacttctt ctacgacgcc gcgcaggaaa
     1381 atgccgtgcg ccacctgcag cggctctacg acgatcttgt cagcgagtcg cagtcgtcct
     1441 ccggcctgct cggcaaattg ttcggcaaga agcgccaggc cccggtcagg ggcctctact
     1501 tctggggcgg tgtcggccgt ggcaagacct atctggtcga caccttcttc gacgcgctgc
     1561 ccttcgaaca gaagatgcgc acccacttcc atcgcttcat gaagcgcgtc cacgaggaga
     1621 tgaagaccct caagggcgag aagaacccgc tgaccatcat cggcaagcgc ttcgccgacg
     1681 aggcgcgggt gatctgcttc gacgaattct tcgtcagcga catcaccgac gccatgatcc
     1741 tcgccaccct gctggaggag ctgtttaaga acggcgtgag cctggtggct acctccaaca
     1801 tcgtgccgga cggcctgtac aaggacggtc tgcagcgcgc gcgcttcctg ccggcgatcg
     1861 ccctgctcaa ggagcacacc gagatcgtca acgtcgacag cggcgtggac taccgcctgc
     1921 gcgcgctgga gcaggccgag ctgttccact tcccgctggg tccggcggcc gaggagagcc
     1981 tgcagaagag cttccgcagc ctgttgccgg actgccagca catggtggag aacgaggcgc
     2041 tgaccatcga gaaccgcacg atcaacgcgg tgcgggtctg cgaagacgtg gcctggttcg
     2101 agttccgcga actgtgcgat ggcccgcgca gccagaacga ctacatcgag ctgggcaagc
     2161 tgttccacgc ggtgatcctg gccaacgtcg agcagatgag cgtggccaag gacgacatgg
     2221 cgcggcgctt catcaacctg gtggacgagt tctacgaccg caacgtcaag ctgatcatct
     2281 ccgccgaggt ggagctgaag gacctgtaca gcggcggtcg cctgaacttc gagttccagc
     2341 gcaccctgag ccgcctgctg gagatgcagt cgcacgagtt cctgtcgcgc ccgcaccggc
     2401 cctgactggc tggggctgga aagaaaaggg ctgcccacgg gc
//
LOCUS       DATIHC010000696         1527 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11212, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000696 DATIHC010000000
VERSION     DATIHC010000696.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1527
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11212"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..465
                     /locus_tag="VLF16_11540"
     CDS             <1..465
                     /locus_tag="VLF16_11540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012702197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="His/Gly/Thr/Pro-type tRNA ligase C-terminal
                     domain-containing protein"
                     /protein_id="HSX71554.1"
                     /translation="KYSEAMGCKVLGESGKPVTLTMGCYGIGVSRVVAAAIEQNYDER
                     GILWTDALAPFQIAIVPMKYENEAVRAATDKLYAELTAAGYEVLLDDRDKKTSPGVKF
                     ADMELIGIPHRLVVGERGLADGTFEYKNRRDSDAQQVAAADLPSFLASRIAR"
     gene            484..1434
                     /locus_tag="VLF16_11545"
     CDS             484..1434
                     /locus_tag="VLF16_11545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019580971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71555.1"
                     /translation="MFQRHTLRTGAALLGAFLLVGCANHLPQRSEHEERFERRLLDHS
                     LQIDVGEPRVLELPQRRVRIHEQKTFEVTEFEVTRHYDRYTPYQPWRELYEVPLGAVA
                     VVAGVGANVLNVVLLGRLPDSVTKDWISYGVAGLNPAMNVESNGRSQQNLAAIDERQH
                     DKRMEYSSLPWSERPVQVKAGGENHELTTDRGGVLRLNLLDGPFADHDASKVGTLLLS
                     VEDPQDGTRAEATLLVSRDLRGKLGEAHALIYDDLEDDEVAQWVYRVKRLSDLGLEEE
                     ASELEQSLIELTRNDPELQEAFLESLMKDAGRLAADPGED"
BASE COUNT          285 a          524 c          499 g          219 t
ORIGIN      
        1 aagtacagcg aagccatggg ctgcaaggtg ctgggcgaga gcggcaagcc ggtcaccctg
       61 accatgggct gctacggcat cggcgtctcc cgcgtcgtgg ctgccgccat cgagcagaac
      121 tacgacgaac gcggcatcct ctggaccgac gccctggcgc cgttccagat cgccatcgta
      181 ccgatgaaat acgagaacga ggccgtgcgc gcagccaccg acaagctcta cgccgagctg
      241 actgcggcag gctatgaggt gctgctggac gaccgcgaca agaagaccag ccccggcgtg
      301 aagttcgccg acatggagct gatcggcatc ccgcaccgcc ttgtggtcgg cgagcgcggc
      361 ctggccgacg gcaccttcga atacaagaat cgccgcgaca gcgacgctca gcaggtggct
      421 gccgccgacc tgccgagctt cctcgcctcg cgcatcgccc gctgagcccg agccgaagcc
      481 tgaatgttcc agcgtcatac ccttcgcacc ggcgccgccc tgctcggcgc cttcctgctg
      541 gtcggctgtg ccaaccatct gccgcaacgc agcgagcacg aggagcgctt cgagcgccgc
      601 ctgctcgacc acagcctgca gatcgacgtg ggcgagccac gggtactgga gctgccgcaa
      661 cggcgcgtgc gcatccacga gcagaagacc ttcgaagtca ccgagttcga ggtcactcgc
      721 cactatgacc gctacacccc ctaccagccc tggcgcgagt tgtacgaagt gccgctgggc
      781 gcggtagcgg tggtggccgg tgtcggtgcc aacgtgctca atgtggtgct gctcggccgc
      841 ctcccggaca gcgtcaccaa ggactggatc agctacggtg tcgctggtct caacccggcg
      901 atgaacgtgg agtccaacgg ccgctcccag cagaacctgg cggccatcga cgagaggcag
      961 cacgacaagc gcatggagta ttcgagcctg ccctggtccg aacgcccggt gcaggtcaaa
     1021 gctggcgggg aaaaccacga gttgaccacc gaccgcggtg gcgtgctgcg cctcaatctg
     1081 ctcgatggcc cgttcgccga ccacgatgcc agcaaggtcg ggaccctgct gctgagcgtg
     1141 gaggacccgc aggacggcac tcgcgccgag gccaccctgc tggtcagccg cgacctgcgc
     1201 ggcaagctgg gcgaggcaca cgcgctgatc tacgacgacc tcgaggacga cgaggtcgcc
     1261 cagtgggtct accgggtcaa acgcctatcc gacctgggcc tggaagagga agccagcgag
     1321 ctggagcaga gcctgatcga gctgacccgc aacgatccgg agctgcagga agcgtttctc
     1381 gaatcgctga tgaaggatgc cggccgcctg gccgccgatc ccggcgagga ctgatcagcg
     1441 tcggatgatg aagccggcga cgccctgcac cggctgcggc tcgagttcca gcgagtccac
     1501 tcgagcctga gccggcccac gctccag
//
LOCUS       DATIHC010000697         4995 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34566, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000697 DATIHC010000000
VERSION     DATIHC010000697.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4995)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4995)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4995
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34566"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..107)
                     /locus_tag="VLF16_11550"
     CDS             complement(<1..107)
                     /locus_tag="VLF16_11550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015097294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HSX71556.1"
                     /translation="MIAYLQHLSFWDWLAFGTVLLILEVFGAGGYLLWIG"
     gene            complement(104..1027)
                     /locus_tag="VLF16_11555"
     CDS             complement(104..1027)
                     /locus_tag="VLF16_11555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003457453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HSX71557.1"
                     /translation="MEIGGVIFLFVGLALAVVFMGFKVVPQGYEWTVERFGRYTNTLT
                     PGLNIIVPVMDRIGRKLNVMESVLDIPPQEAISADNAIVTIDAVCFFQVINAAQAAYE
                     VNDLEHAIRNLVMTNIRTVLGSMELDAMLSQRDAINERLLRTVDEATAPWGIKVTRIE
                     IKDISPPADLVEAMASQMKAERLKRAQILEAEGKRQAEILTAEGKKQAQILEAEGERQ
                     AAFLEAEARERAAQAEAEATRMVSDAIASGNVQAVNYFVAQKYVDALGQLASANNSKV
                     VLMPLEASQVIGAVGGIGEIVRATFGKDGQP"
     gene            complement(1093..2877)
                     /locus_tag="VLF16_11560"
     CDS             complement(1093..2877)
                     /locus_tag="VLF16_11560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspE/PulE family protein"
                     /protein_id="HSX71558.1"
                     /translation="MSTLASPAQDRWLDLNDILRELVAQGRVAQEQAEQCMVLRRASA
                     NAQLHPLEFLAAQQIDDLQRPGRKHDLEGLTVWLANFAGQPYLRIDPLKIDVAAVTPL
                     MSYAFAQRHKILAVAADSETVTIASAQPFVHNWESNLTHVLKRPIKRVVANPADIQRF
                     TTEFYRLARSVSGATAQDIKISGVGNFEQLLNLGASDQEPDANDAHIVNIVDWLFQYA
                     FQQRASDIHIEPRREIGTVRFRIDGVLHNVYQFPAQVTMAVVSRLKHLGRMNVAEKRK
                     PQDGRVKTKTPEGGEVELRLSTLPTAFGEKMVMRIFDPEVLLKSPDQLGFSPDDLRRW
                     ESMTCQPNGIILVTGPTGSGKTTTLYTTLKQLATDEVNVCTIEDPIEMIEGAFNQMQV
                     QHNIELTFASGVRALMRQDPDIIMVGEIRDLETAEMAIQAALTGHLVLSTLHTNDAPS
                     AITRLLDLGLPHYLLKATILGVMAQRLVRTLCPHCKAPVDMSEDSWQDLTRPWNAPLP
                     TGAHRAVGCLECRETGYRGRAGVYEIMLLNDSIKPLITADTDLIALRRAAFKDGMRSL
                     RLSGAQKVAAGLTTVEEVLRVTPQSEQK"
     gene            complement(2911..4275)
                     /locus_tag="VLF16_11565"
     CDS             complement(2911..4275)
                     /locus_tag="VLF16_11565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003458699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HSX71559.1"
                     /translation="MAKETEIKLRASRETLAALRDHPLLKKRNKSGWQTHELFNQYYD
                     SAERDLAGARVALRLRRDGEQFIQTLKSRGQSVAGLSERNEWDWHLKKAKLDLKLLDD
                     SCWPASLAEFDKGRLQPIFTTDFVRQKAEIAWGRGKAKTVIEAALDLGKVVAGEGEEE
                     ICELELELREGEPAALLELACELAADLPLMPCDISKAERGYRLFDAGSYSLSLPAPEL
                     NAEMALDDAFAALAWHLLGSSQRLAEQYRWNGHWKLLEQWLQQLIDLRALLGSLGQAA
                     PRASSRELREGLDALLGDWRPRLAAGRDDEALRHHAPAMFAGELLGNRWGLLSLQLSR
                     WLLQRGWTVGRNPRGDRQGAAALGNWLPTLLAEEAEGLRLKHYQQFPEALAEQLPRIE
                     RLQAWLRLARQVPELPELDRLYGELGKLEALASRDNDAEVLVARQAQAHTVATLKPWK
                     LLLK"
     gene            complement(4343..>4995)
                     /locus_tag="VLF16_11570"
     CDS             complement(4343..>4995)
                     /locus_tag="VLF16_11570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003286757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HSX71560.1"
                     /translation="DALSDYLALGRAGNTELPKQFRCDAKLTEPTIAALMENLNGVTD
                     YNQMSQEKRTQVRRYLLCLDDTAKKVGKLATLPAREKADLDKLRKDLTATTEYAPTWV
                     IFAVALALGIGTMVGWKRVVLTVGEKIGKQGMTYAQGMSAQITASIAIGLANVYSLPV
                     STTHVLSSGVAGTMVANKSGLQFGTVRNILMAWVLTLPATILLSAGLFWLGVKLFV"
BASE COUNT          701 a         1615 c         1780 g          899 t
ORIGIN      
        1 ccgatccaca gcaggtagcc gccggcaccg aacacctcga gaatcagcag cacggtgccg
       61 aaggccagcc agtcccagaa ggacaggtgc tgcaggtaag cgatcacggc tggccatcct
      121 tgccgaaggt ggcgcggacg atctcgccga tgccgccgac cgcgccgatc acctgactgg
      181 cctcgagcgg catcagcacc accttgctgt tgttggcgga ggccagctgg ccgagggcgt
      241 cgacgtactt ctgcgcgacg aagtagttga ccgcctgcac gttgccgctg gcgatggcgt
      301 cggacaccat gcgggtcgcc tcggcttcgg cctgggcggc acgctcgcgg gcctcggcct
      361 cgaggaacgc ggcctggcgc tcgccctcgg cctcgaggat ctgcgcctgc ttcttgcctt
      421 cggcggtgag gatctcggcc tggcgtttgc cttcggcctc gagtatctgc gcacgcttga
      481 gacgctcggc cttcatctgg ctggccatgg cctcgaccag gtcggcgggc gggctgatgt
      541 ccttgatctc gatgcgggtg accttgatgc cccagggcgc ggtcgcctcg tccacggtac
      601 gcagcaggcg ctcgttgatc gcgtcgcgct ggctgagcat ggcgtctagc tccatggagc
      661 cgagcacggt gcggatattg gtcatcacca ggttgcggat ggcgtgttcc aggtcgttga
      721 cctcgtaggc cgcctgggcc gcgttgatca cctggaagaa gcacaccgcg tcgatggtga
      781 cgatggcgtt gtcggcgctg atcgcctcct gcggcgggat gtccagcacg ctctccatga
      841 cgttgagctt gcggccgatg cggtccatca ccgggacgat gatgttgagg cccggggtga
      901 gcgtgttggt gtagcggccg aagcgctcga ccgtccactc gtagccctgc ggtaccacct
      961 tgaagcccat gaacacgacg gccagcgcca ggccgacgaa gagaaagatc acaccaccga
     1021 tttccatgct gctgcctcct gctgatgcat gtgtgcgcgc agtattgcat gcgccgctcg
     1081 gcttgggtgg cgctacttct gctcgctctg cggggtgacc cgcagcactt cctcgacggt
     1141 ggtgaggccg gcggcgacct tctgcgcgcc ggacaggcgc aggctgcgca tgccgtcctt
     1201 gaacgccgcg cggcgcaggg cgatgaggtc ggtgtcggcg gtgatcagcg gcttgatgct
     1261 gtcgttcagc agcatgatct cgtagacccc ggcgcggccg cggtagccgg tctcgcggca
     1321 ttccagacag ccgacggcgc ggtgggcacc ggtcggcagc ggcgcgttcc agggccgggt
     1381 caggtcctgc cagctgtctt cgctcatgtc caccggcgcc ttgcagtgcg ggcagagggt
     1441 gcgcaccagg cgctgggcca tgacgccgag gatggtggcc ttgagcaggt agtgcggcag
     1501 gccgaggtcg agcaggcgcg tgatcgccga cggcgcgtcg ttggtgtgca gggtggacag
     1561 caccaggtgg ccggtgagcg ccgcctggat ggccatctcg gcggtctcca ggtcgcggat
     1621 ctcgccgacc atgatgatgt ccgggtcctg gcgcatcagc gcacgcacgc cgctggcgaa
     1681 ggtcagctcg atgttgtgct gcacctgcat ctggttgaag gcgccctcga tcatctcgat
     1741 cgggtcttcg atggtgcaga cgttcacctc gtcggtggcc agctgcttga gcgtggtgta
     1801 gagcgtggtg gtcttgcccg agccggtggg gccggtgacc aggatgatgc cgttgggctg
     1861 gcaggtcatg ctctcccagc ggcgcaggtc gtcgggcgag aaaccgagct ggtccgggct
     1921 cttcagcagc acctcggggt cgaagatgcg catcaccatc ttctcgccga aggcggtggg
     1981 cagggtcgac aggcgcagct ccacctcgcc gccttccggc gtcttggtct tgacccggcc
     2041 gtcctgcggc ttgcgcttct ccgccacgtt catccgaccg aggtgcttga ggcggctgac
     2101 caccgccatg gtgacctggg cggggaactg gtagacgttg tgcagcacgc cgtcgatgcg
     2161 gaagcgcacg gtgccgatct cgcggcgcgg ctcgatgtgg atgtcgctgg cacgctgctg
     2221 gaaggcgtac tggaacagcc agtcgacgat gttgacgatg tgcgcgtcgt tggcgtccgg
     2281 ctcctgatcg ctggcgccca ggttgagcag ctgctcgaag ttgccgacgc cgctgatctt
     2341 gatgtcctgg gcggtggcgc cgctgaccga gcgggccagg cggtagaact cggtggtgaa
     2401 gcgctggatg tcagccgggt tggccaccac ccgcttgatc gggcgcttga gcacgtgggt
     2461 caggttgctt tcccagttgt gcacgaaggg ctgcgcgctg gcgatggtca ccgtctcgct
     2521 gtccgccgcc acggcgagga tcttgtggcg ctgggcgaag gcgtaggaca tcagcggggt
     2581 caccgccgcc acgtcgatct tcagcgggtc gatgcgcagg tacggctggc cggcgaagtt
     2641 ggccagccac acggtgaggc cttccagatc gtgcttgcgc ccgggccgct gcagatcgtc
     2701 gatctgctgg gcggcgagga actccagggg atgcagctgg gcgttggccg aggcgcggcg
     2761 cagcaccatg cactgctcgg cctgctcctg ggccacgcgg ccctgggcca ccagttcgcg
     2821 gaggatgtcg ttgaggtcga gccagcgatc ctgggcgggc gaggcgaggg tggacatgga
     2881 gctccctttt ctgtgacgag ggcgagcagc ttatttcagc agcagcttcc agggtttgag
     2941 cgtcgccaca gtatgggcct gtgcctgacg agcgaccagc acttcggcgt cgttgtcgcg
     3001 gctggccagc gcctccagct tgcccagctc gccgtacagg cgatccagct ccggcagttc
     3061 cggcacctgg cgggccaggc gcagccaggc ctgcaggcgc tcgatgcgcg gcagctgctc
     3121 ggccagcgcc tcggggaatt gctggtagtg cttcaggcgc aggccctcgg cctcctcggc
     3181 cagcagggtc ggcagccagt tgcccagcgc cgccgcgccc tggcgatcgc cacgcgggtt
     3241 gcggccgacc gtccagccgc gctgcagcag ccagcgcgac agttgcagcg acagcaggcc
     3301 ccagcggttg cccagcaatt cgccagcgaa catggccggc gcgtggtggc gcagcgcctc
     3361 gtcgtcgcgg ccggcggcca gacgcggacg ccagtcgccc agcagcgcat cgagaccctc
     3421 gcgcagctcg cggctggagg cgcgcggcgc ggcctggccg aggctgccga gcagcgcgcg
     3481 caggtcgatc agttgctgca gccattgctc cagcagcttc cagtggccgt tccagcggta
     3541 ctgctcggcc aggcgctggc tgctgccgag caggtgccag gcgagggcgg cgaaggcgtc
     3601 gtccagcgcc atctcggcat tcagctccgg cgccggcagg ctcaggctgt agctgcccgc
     3661 gtcgaacagc cggtagccgc gctcggcctt gctgatgtca cagggcatca gcggcaggtc
     3721 ggcggccagc tcgcaggcca actccagcag cgcagccggc tcgccttcgc gcagctccag
     3781 ttccagctcg cagatttctt cctcaccctc gccggcgacc accttgccca ggtccagggc
     3841 cgcctcgatc accgtcttgg ccttgccgcg gccccaggcg atctcggcct tctggcggac
     3901 gaagtcggtg gtgaagatcg gttgcaggcg gcccttgtcg aactccgcca ggctggccgg
     3961 ccagcagctg tcgtcgagca gcttgagatc gagcttggcc ttcttcagat gccagtccca
     4021 ctcgttgcgc tcggacagcc cggccacgct ctggccgcgg ctcttcaggg tctggatgaa
     4081 ctgctcgccg tcgcggcgca ggcgcagggc gacgcgagcg ccggccaggt cgcgctcggc
     4141 gctgtcgtag tactggttga acagctcgtg ggtctgccaa ccggacttgt tgcgcttctt
     4201 cagcagcggg tggtcgcgca gggcggcgag ggtttcgcgg ctggcgcgca gtttgatctc
     4261 ggtttctttg gccatttcag catctcggta atacatcaac gaaaaggccg cccgtaggcg
     4321 gccttgtcat gcggggcgcg gttcagacga acagcttcac gcccagccag aacagacccg
     4381 cggagagcag gatggtggcc ggcagggtca gcacccaggc catcaggatg ttgcgcactg
     4441 taccgaattg caggccgctc ttgttggcga ccatggtacc ggcgacgccg gacgacagca
     4501 cgtgggtggt cgacaccggc aggctgtaga cgttggccag gccgatggcg atggacgcgg
     4561 tgatctgcgc gctcatgccc tgggcgtagg tcatgccctg cttgccgatc ttctcgccga
     4621 cggtcagcac cacgcgcttc cagccgacca tggtgccgat gcccagggcc agggccacgg
     4681 cgaagatcac ccaggtgggc gcgtattcgg tggtggcggt gaggtccttg cgcagcttgt
     4741 ccaggtcggc cttctcacgc gccggcaggg tcgccagctt gccgaccttc ttcgcggtgt
     4801 cgtccaggca cagcaggtag cggcggacct gggtgcgctt ctcctggctc atctggttgt
     4861 agtcggtgac gccgttgagg ttttccatca gcgcggcgat ggtcggctcg gtgagcttgg
     4921 cgtcgcagcg gaactgcttg ggcagctcgg tgttgccggc gcggcccaga gccaggtagt
     4981 cgctcagcgc atcat
//
LOCUS       DATIHC010000698         1934 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_41820, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000698 DATIHC010000000
VERSION     DATIHC010000698.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1934)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1934)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1934
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41820"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(176..751)
                     /gene="rplQ"
                     /locus_tag="VLF16_11575"
     CDS             complement(176..751)
                     /gene="rplQ"
                     /locus_tag="VLF16_11575"
                     /inference="COORDINATES: protein motif:HMM:TIGR00059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005762 - mitochondrial large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HSX71561.1"
                     /translation="MPTPTKGPRLGGGPAHERLMLANLAASLFEHKRITTTVTKAKRL
                     KPYAERLVTFAKRGDLASRRRVLGLISNKGVVHELFTDIAQAVENRDGGYTRITKIGN
                     RKGDNAPMAVIELVLEPVSAKQAVVAEATQAAAKAAPAAEEAPEAEVAETEAAEAPAA
                     EETATEEAATEEAPAAEEAAEAPAAEEKDAK"
     gene            complement(823..1833)
                     /locus_tag="VLF16_11580"
     CDS             complement(823..1833)
                     /locus_tag="VLF16_11580"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF003514.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HSX71562.1"
                     /translation="MLIAQRPTLSEEVVSENRSRFIIEPLEPGFGYTLGNSLRRTLLS
                     SIPGAAVTSIRIDGVLHEFTTVPGVKEDVTEIILNIKSLSVSSEHDEPVVAYLRKQGP
                     GVVTAADIAPPAGVEFHNPDLHIATLNSKGKFELELTIERGRGYVSAAQNKSGDAEIG
                     RIPVDSIYSPVLKVTFRVEATRVEQRTDFDKLIVDVETKQAIAPRDAVASAGTTLVEL
                     FGLARELNTAAEGIEIGPSPTDAALAADMALPIEDLDLTVRSYNCLKREGIHTVGELV
                     ARSEADLMDIRNFGAKSIDEVKAKLVELGLSLKDSPPGFDLAARAAAIEEDDAAFGDD
                     EL"
BASE COUNT          341 a          560 c          650 g          383 t
ORIGIN      
        1 tcctccagga ctccctggac tgtccgcagg cccggctgca gtgcccaccc gctgaagggg
       61 ccgccgtcgt aggacaaatc aagccggaca cgcaaaaacc cgccgccccc caaaacgggg
      121 gccgcgggtt tttggtcgtt catagactta agtctatgcg aagaaaatca gcgaattact
      181 tcgcgtcctt ttcctcggca gcgggagctt cagcagcttc ctcagcggcc ggagcctctt
      241 cggtggcagc ttcttcagtc gcagtttctt cagcagcggg agcctcagca gcttcggtct
      301 cggcgacctc ggcctcggga gcttcctcgg cagccggagc agccttggca gcagcctggg
      361 tagcctcggc gactacagcc tgcttggcgg aaaccggctc aagaaccagc tcgatgacag
      421 ccatgggagc gttgtcgccc ttgcggttgc cgatcttggt gatgcgggtg tagccgccgt
      481 cgcggttctc cactgcctgg gcaatgtcgg tgaacagctc gtggacaacg cccttgttgc
      541 tgatcaggcc caggacgcgg cggcgggaag ccaggtcgcc gcgcttggcg aaggtcacca
      601 ggcgctctgc gtacggcttc aggcgcttgg ccttggtcac cgtggtggtg atccgcttgt
      661 gctcgaacag ggatgctgcc aggttcgcga gcatgaggcg ctcgtgagcc gggccgcctc
      721 cgaggcgcgg acccttagtg ggggtaggca taattgtttc tcctcaaatg gaagccgtgg
      781 gctgtgcaca ccgtggtgcc tgcccgccgg ccaaggtctg gtttagagtt cgtcgtcgcc
      841 gaaggcggcg tcgtcctctt cgattgctgc ggcgcgtgct gcgaggtcaa aaccgggagg
      901 cgagtccttg agggacaggc ccagttcaac cagctttgcc ttgacctcgt caatggactt
      961 ggcaccgaag ttgcggatgt ccatcaggtc agcctcggag cgggcaacga gttcacccac
     1021 ggtgtggatg ccctcacgct tgaggcagtt gtaggaacgg acggtgaggt ccagatcctc
     1081 gatcggcagt gccatgtcgg ctgccagggc agcgtcggtg ggcgacgggc cgatctcgat
     1141 accttcagct gcggtgttca gctcacgggc cagaccgaac agttccacca gggtggtgcc
     1201 tgcggaagca acggcatcgc gcggggcgat ggcctgcttg gtctcgacgt cgacaatgag
     1261 cttgtcgaag tcagtgcgct gctcaacacg ggtggcttcc acgcggaaag taaccttcag
     1321 caccggcgag tagatggagt caaccgggat acggccgatc tctgcgtcgc cggacttgtt
     1381 ctgagctgcc gaaacgtagc cgcggccgcg ctcgatggtc agttcgagtt cgaacttgcc
     1441 cttcgagttc agcgtggcaa tgtgcagatc cgggttgtgg aattcgacgc cggccggcgg
     1501 agcgatgtcc gcggcggtga cgactccggg gccctgcttg cgcaggtaag cgacaaccgg
     1561 ctcatcgtgc tcggaggaaa ccgagaggct cttgatgttc aggatgatct cagtgacatc
     1621 ttccttgaca cccggaaccg tggtgaactc gtgcagcacg ccatcgatcc ggatgctggt
     1681 tacagcggca ccggggatgg aggagagcag ggtacggcgg agggagtttc cgagggtgta
     1741 gccgaagccc ggttccagcg gttcaatgat gaaacgtgaa cggttttcgg agactacctc
     1801 ttcggagagg gtggggcgct gtgcaatgag cacttaggtt tcctttcggc gagcatccgc
     1861 tatatgacgc aacacaggtg gtggaaaatc ggtctgagac ttaacgcgct gggcttgccc
     1921 ggaccctagg aggg
//
LOCUS       DATIHC010000699         3959 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_29986, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000699 DATIHC010000000
VERSION     DATIHC010000699.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3959
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29986"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..219)
                     /locus_tag="VLF16_11585"
     CDS             complement(<1..219)
                     /locus_tag="VLF16_11585"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003247167.1"
                     /note="catalyzes the DNA-template-directed extension of
                     the 3'-end of a DNA strand; the delta' subunit seems to
                     interact with the gamma subunit to transfer the beta
                     subunit on the DNA; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HSX71563.1"
                     /translation="MAEAYPWQAQLWQQLASRPRHAHAYLLHGPAGIGKRDLAERLMA
                     RLLCQQPAGLDACGQCKSCHLLAAGTHPD"
     gene            complement(212..844)
                     /gene="tmk"
                     /locus_tag="VLF16_11590"
     CDS             complement(212..844)
                     /gene="tmk"
                     /locus_tag="VLF16_11590"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HSX71564.1"
                     /translation="MSGLFITLEGPEGAGKSTNREYLAERLRERGVEVVLSREPGGTP
                     LAERIRELLLAPSDEPMDSDTELLLVFAARAQHLARVIRPALERGAVVLCDRFTDATY
                     AYQGGGRGLGGERIAELERFVQGELRPDLTLVFDLPVEIGLSRAAARGRLDRFEQEGR
                     AFFDAVRQTYLQRAAAMPARYRVLDAAQSLEAVQRAIDGLLPEILERCRG"
     gene            complement(854..1891)
                     /gene="mltG"
                     /locus_tag="VLF16_11595"
     CDS             complement(854..1891)
                     /gene="mltG"
                     /locus_tag="VLF16_11595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HSX71565.1"
                     /translation="MIRKILLLLATGAVLLVLALALAGWRLHAALNQPLQLEAERLIE
                     VVPGDTPGGLLNRLEHDGIIDGAFWLRLYWRFNLEGQPLHKGEYRLTPGQSVRDLIGL
                     WQRGEVVQYSLTLVEGWNFRQVRAALVRQEKLEQQLASLDDKALMERLGLPGVSPEGR
                     FFPDTYRYVRGMSDLDLLEQARDRLDQVLDEEWKGRAQGLPYRKPYDALIMASMVEKE
                     TGVPEERGQIAGVFVRRLRSGMRLQTDPTVIFGLGERYNGKLRRADLLEPTPYNTYVI
                     DGMPPTPIALSGREAIHAALHPVAGKSLYFVARGDGSHVFSETLEQHNRAVRQYQLKR
                     RADYRSSPAPR"
     gene            complement(1895..2710)
                     /gene="pabC"
                     /locus_tag="VLF16_11600"
     CDS             complement(1895..2710)
                     /gene="pabC"
                     /locus_tag="VLF16_11600"
                     /EC_number="4.1.3.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012700127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008696 - 4-amino-4-deoxychorismate lyase
                     activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0046656 - folic acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate lyase"
                     /protein_id="HSX71566.1"
                     /translation="MLSWVDGRPAADLPLADRGLAYGDGLFETIAVRRGRAVLLPRHL
                     TRLGEGLRRLSIDLDLLALESELQAFFAELGEGVAKLMVTRGEGLRGYAAPQPVSPRR
                     VLLGNPLPSYPASHAEQGVRLFPCATRLAEQPLLAGLKHLNRLEQVLARSEWQGASYA
                     EGLMQDVSGRVIEGVFSNLFLVKDGVLLTPALSRSGVAGVMRAEVLELAVRLGISCEV
                     RDIAHDELLAADEVFLCNSLYGIWPVRELAASVWPAGPLTRKLQATIRSLLDS"
     gene            complement(2710..3954)
                     /gene="fabF"
                     /locus_tag="VLF16_11605"
     CDS             complement(2710..3954)
                     /gene="fabF"
                     /locus_tag="VLF16_11605"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012018160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HSX71567.1"
                     /translation="MSRRRVVVTGMGMLSPLGTDVASSWQGILAGRSGIGLIEHMDLS
                     AFSTRFGGSVKGFNVEDYLSAKEARKLDLFIQYGLAASFQAMRDSGLEVTDANRERIG
                     VAMGSGIGGLTNIENNCQSLLEQGPRRISPFFVPGSIINMISGFLSIHLGLQGPNYAI
                     ATACTTGTHCIGMAARNIAYGEADVMVAGGAEMATCGLGMGGFGAARALSTRNDDPAK
                     ASRPWDKHRDGFVLSDGAGALVLEELEHAKARGATIHAELIGFGMSGDAFHMTAPPED
                     GAGAARCMTNALRDAGLNPDQVQYINAHGTSTSAGDKAEASAVKAVFGEHAHKLSVSS
                     TKSMTGHLLGAAGAVEAIFSVLALRDQVAPPTINLDEPDEGCDLDFVAHQAKPLAIDA
                     VLSNSFGFGGTNGSLVFRRFNG"
BASE COUNT          658 a         1345 c         1360 g          596 t
ORIGIN      
        1 gtctggatga gtgccggccg ccagcaggtg acaggacttg cactggccgc aggcgtccag
       61 gccggccggc tgctggcaca gcaggcgcgc catcaggcgt tcggccagat cgcgcttgcc
      121 gatgccggcc gggccatgca gcaggtaggc gtgggcatgc cgcgggcggc tggccagctg
      181 ctgccagagc tgcgcctgcc aggggtaagc ctcagccacg gcagcgctcc aggatttccg
      241 gcagcaggcc gtcgatggcg cgctgcaccg cctccagtga ctgcgcggca tcgagcacgc
      301 ggtagcgcgc gggcatggcc gcagcgcgct gcaggtaggt ctgacggacg gcgtcgaaga
      361 aggcccggcc ctcttgctcg aagcggtcca gacggccacg cgccgcggca cgggacaggc
      421 cgatctccac cggtaggtcg aacaccagag tcaggtcggg gcgcagttcg ccctggacga
      481 aacgctccag ctcggcgatg cgctcaccgc ccaggccacg gccgccgccc tggtaggcat
      541 aggtggcgtc ggtgaaacgg tcgcacagga ccaccgcgcc acgctccagc gccgggcgga
      601 tgacccgcgc gagatgctgg gcgcgggcgg cgaacaccag cagcagctcg gtatcgctgt
      661 ccatgggctc gtcgctgggc gccaacagca gttcgcggat gcgctcggcc aacggcgtac
      721 cgccgggctc gcggctcagc accacctcga cgccccgctc gcgcaggcgc tcggcgaggt
      781 actcgcgatt ggtgctcttg ccggcccctt ccgggccttc cagggtgatg aacagaccgc
      841 tcacggagtt tccttatctg ggggccgggc tggaccggta atcggcgcgg cgcttgagct
      901 gatactggcg cacggcacgg ttgtgctgct ccagggtttc cgagaacacg tggctgccgt
      961 cgcctcgggc gacgaaatac aaggacttgc ccgctacggg gtgaagcgcg gcatggatgg
     1021 cctcgcgccc ggacagggcg atcggcgtcg gcggcatacc gtcgatgacg taggtgttgt
     1081 agggcgtcgg ttcgagcaga tcagcgcgtc tcagcttgcc gttgtagcgc tcgccgaggc
     1141 cgaagatcac cgtcgggtcg gtctgcaggc gcatgccgct gcgcaggcgg cggacgaaca
     1201 cgccagcgat ctggccgcgc tcctcgggca cgccggtttc cttttcgacc atcgaggcca
     1261 tgatcagggc atcgtagggc ttgcgatacg gcaacccttg cgctcggccc ttccactcct
     1321 cgtccagcac ctggtccagg cgatcacgcg cctgctcgag caggtcgaga tcgctcatgc
     1381 cgcgcacgta gcggtaggtg tcggggaaga aacgcccctc ggggctcacg ccgggcaggc
     1441 cgagacgctc catcagcgcc ttgtcgtcca ggctggcgag ctgttgctcc agtttttcct
     1501 ggcgcaccag cgcggcacgg acctggcgga agttccagcc ttccaccagg gtgaggctgt
     1561 attgcaccac ttcgccgcgc tgccacaggc cgatcaggtc gcggacgctc tgccccggag
     1621 tcaggcgata ctcgcccttg tgcaggggct gcccttcgag gttgaagcgc cagtacaggc
     1681 gcagccagaa cgcgccgtcg ataatgccgt cgtgctccag gcgattgagc agaccaccag
     1741 gagtatcacc cggcaccact tcgatcaggc gctcggcttc cagctggagc ggttggttca
     1801 gtgcggcatg cagacgccag ccggccagcg ccagggccag cacgagcaac accgcgccgg
     1861 tggccagcag cagcaaaatc ttgcgaatca cgaatcagga atccaggaga ctgcgaatgg
     1921 tggcctgcag tttacgggtg agcgggccgg ccggccagac gctcgcggcc agttcgcgca
     1981 ccggccagat gccgtagagg ctgttgcaga ggaacacctc gtcggcggcg agcagctcat
     2041 catgagcgat gtcgcgcacc tcgcacgaaa tgcccaggcg caccgccagc tccagtacct
     2101 ccgcgcgcat aacaccggcc accccgctgc gcgacagcgc cggcgtcagc agcacgccat
     2161 ccttgaccag aaacaggttg ctgaacacgc cctcgatcac ccggccggac acatcctgca
     2221 tcaatccctc ggcgtagctt gcgccctgcc attcgcttcg ggccagcacc tgctccagac
     2281 ggttgaggtg tttgaggccg gcgagcagcg gctgctcggc caggcgcgtg gcgcagggga
     2341 acaggcgcac gccctgctcg gcgtggctag cgggatagct gggcaagggg ttgcccagca
     2401 gaacgcgccg ggggctgaca ggctgcggcg ccgcgtagcc gcgcaggccc tcgccgcggg
     2461 tcaccatcag cttggcaacg ccctcgccca gttcggcgaa aaaggcctgc agctcggact
     2521 ccagagccaa caggtcgagg tcgatggata gccgccgcaa cccctcgccg aggcgagtga
     2581 gatggcgcgg cagcagcacc gcgcggccgc gccgcacggc gatggtctcg aacaggccat
     2641 cgccataggc caggccgcgg tcagccagcg gcaggtccgc ggccgggcgg ccgtcgaccc
     2701 agctcagcat cagccgttga agcggcggaa caccagcgaa ccgttggtgc cgccgaagcc
     2761 gaaggagttg gacagcaccg cgtcgatcgc cagcggcttg gcctggtggg cgacgaagtc
     2821 gaggtcgcag ccctcgtccg gctcgtccag gttgatggtc ggcggcgcca cctgatcacg
     2881 cagggccagc acgctgaaga tcgcctccac cgcaccggcg gcgcccagca ggtgcccggt
     2941 catggatttg gtcgagctga ccgacagctt gtgggcatgc tcgccgaaca ccgccttcac
     3001 cgcgctggcc tcggccttgt cgcccgccga ggtggaggtg ccgtgggcat tgatgtactg
     3061 cacctggtcc gggttcaggc ctgcatcgcg cagggcgttg gtcatgcagc gggctgcgcc
     3121 ggcgccgtcc tcgggcggtg cggtcatgtg gaaggcatcg ccactcatgc cgaaaccgat
     3181 cagctcggca tggatggtcg cgccacgggc cttggcgtgc tccagctctt ccagcaccag
     3241 ggcgccggca ccgtcggaca gcacgaagcc gtcgcgatgc ttgtcccagg ggcggctggc
     3301 cttggccgga tcatcgttgc gggtagacag cgcacgggcc gcgccgaagc cgcccatgcc
     3361 cagaccgcag gtggccatct cggcgccgcc cgccaccatc acatcggcct cgccgtaggc
     3421 gatattgcgc gcggccatgc cgatgcaatg ggtgccggtt gtgcaggcgg tcgcgatggc
     3481 gtagttcggt ccctgcagac ccaggtggat cgacaggaaa ccggaaatca tgttgatgat
     3541 cgagccgggc acgaagaacg gcgagatgcg ccgcgggccc tgctcgagca gcgactggca
     3601 gttgttctcg atgttggtca ggccgccgat gccggagccc atggccacgc cgatgcgctc
     3661 acggttggcg tcggtgactt ccagaccgga atcgcgcatt gcctggaaac tggcggccag
     3721 tccgtactgg atgaacaggt cgagcttgcg tgcctccttg gccgagagat agtcctcgac
     3781 gttgaagccc ttcaccgaac cgccgaagcg agtggagaag gccgacagat ccatatgctc
     3841 gatcaggccg ataccactgc ggccggccag aatgccctgc caactgctgg ccacatcggt
     3901 gcccagcggc gacagcatgc ccattccggt aaccacgacg cgtctacgcg acactgcac
//
LOCUS       DATIHC010000700         1881 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13476, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000700 DATIHC010000000
VERSION     DATIHC010000700.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1881)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1881)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1881
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13476"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..523
                     /locus_tag="VLF16_11610"
     CDS             <1..523
                     /locus_tag="VLF16_11610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSX71568.1"
                     /translation="LAGLDLPSAGEVELSGHALQAMDEDSRARVRAEHVGFVFQSFQL
                     LDNLNALENVMLPLELEGRRDARQRAASLLERVGLGQRFGHYPRQLSGGEQQRVAIAR
                     AFAAEPAILFADEPTGNLDSHTGERISDLLFELNQERGTTLVLVTHDERLAHRCRRLI
                     RLEAGHLVESVEP"
     gene            523..>1881
                     /locus_tag="VLF16_11615"
     CDS             523..>1881
                     /locus_tag="VLF16_11615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018929802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HSX71569.1"
                     /translation="MSARLFVLAWRQLLRDSRAGELRVLFFALLVAVAASTAIGYFGA
                     RLNGAMLLRATEFLGADLVLGGSAPAAPEQIEAGRKLGLEHAQVVEFASVIAGDQGIQ
                     LASIKAASGNYPLRGELKSAAEPYAADRPGGGPQPGEAWAESRLFAALDLKVGQSIEV
                     GSRQLRLTRVLTHEPDRAGDFYSLTPRVLINLEDLASTGVVQPGSRVRYRELWRGDSD
                     TLARYRQDMKQELAPHQRLEDARDGNRQIGGALGRAERYLNLASLAAVLLAGVAVALS
                     ATRFAARRFDASALLRCLGLSRREALGLFGLQLAMLGLMASLAGALLGWVGQLVLFKL
                     LQGLLPSGMPPGGLLPALAGMATGLVALAGFALPPLAALGRVPPLRVLRRDLLPVPPS
                     SWLVYGAALAALGLIMWRLSLDLKLTLGLLGGGVLAALLLGGALLLGMNALRRLLARA
                     SLP"
BASE COUNT          230 a          695 c          648 g          308 t
ORIGIN      
        1 gctggcaggg ctcgatttgc cgagcgccgg cgaggtcgag ctaagcggtc atgccctgca
       61 agccatggac gaggacagtc gcgcccgggt gcgcgccgag catgtcggct tcgtcttcca
      121 gtcgttccag ttgctggaca atctcaacgc gctggagaac gtcatgctgc cgctggagct
      181 ggagggtcgc cgcgatgccc gccagcgcgc cgcgagcttg ctggagcggg tcggcctggg
      241 ccagcgcttc ggtcattatc cccgtcaact ctccggaggc gagcaacagc gcgtggccat
      301 cgcccgcgcc ttcgccgcgg agccggcgat cctgttcgcc gacgagccga ctggcaacct
      361 cgacagccac accggcgagc gcatcagcga tctgctcttc gagctcaacc aggagcgcgg
      421 caccaccctg gtgctggtca cccatgacga gcgcctggcc caccgctgcc gccggctgat
      481 ccgcctggaa gccgggcacc tggtcgagag cgtcgagccc tgatgagcgc ccgcctgttc
      541 gtcctcgcct ggcgccagtt gttgcgcgac tcccgcgccg gcgaactgcg cgtcctgttc
      601 ttcgccctgc tggtggccgt ggccgccagc accgccatcg gctatttcgg cgcgcgtctc
      661 aacggcgcca tgctgctgcg cgccaccgag ttcctcggcg ccgacctggt actgggcggc
      721 agcgcaccgg cggcccccga gcagatcgag gccggccgca aactggggct ggagcatgcc
      781 caggtagtgg aattcgccag cgtcatcgcc ggcgaccagg gcatccagct ggccagcatc
      841 aaggcggcca gcggcaacta tccgctgcgg ggcgaattga agagcgcggc cgagccctat
      901 gccgccgacc gtcccggcgg cggtccgcaa cccggggagg cctgggccga atcacgactg
      961 ttcgccgcgc tggacctgaa ggtcggccag agcatcgagg tcggcagccg ccagctgcgc
     1021 ctgacccggg tgctgaccca cgagccggac cgcgccggcg atttctacag cctcaccccg
     1081 cgcgtgctga tcaacctgga ggacctggcc tccaccggcg tggtgcaacc gggcagtcgg
     1141 gtgcgctatc gcgagctgtg gcgtggcgac agcgacaccc tcgcccgcta tcgccaggac
     1201 atgaaacaag agctcgcccc gcaccagcgc ctggaagacg cccgcgacgg caatcgccag
     1261 atcggcggcg cgctggggcg tgccgagcgc tacctgaacc tcgccagcct tgccgccgtg
     1321 ctgctggccg gtgtggccgt cgccctctcc gccacccgct tcgccgctcg ccgcttcgac
     1381 gccagcgcgc tgttgcgctg cctcggcctg tctcggcgcg aggcgctggg cctgttcggt
     1441 ttgcaactgg ccatgctcgg cctgatggcc agcctggccg gtgcgctgct cggctgggtc
     1501 ggccagttgg tgctgttcaa gctgctgcag ggcctgctgc cgtccggcat gccgcctggc
     1561 ggtctgctgc ccgcgctggc cggcatggcc accggcctgg tggcgctggc cggtttcgcc
     1621 ctgccgcccc tcgcggccct cggtcgtgtt ccgccgctgc gcgtactgcg ccgcgatctg
     1681 ttgccggtgc cgcccagctc ctggctggtg tatggcgccg cgctggccgc gctgggcctg
     1741 atcatgtggc gcctgagcct ggacctgaag ctgactctcg gcctgctcgg cggtggcgtg
     1801 ctcgccgcgc tgctactcgg cggtgcgttg ctgctcggca tgaacgccct gcgtcgattg
     1861 ctggcgcgcg cctcgctgcc c
//
LOCUS       DATIHC010000701         1615 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_32388, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000701 DATIHC010000000
VERSION     DATIHC010000701.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32388"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1219
                     /locus_tag="VLF16_11620"
     CDS             <1..1219
                     /locus_tag="VLF16_11620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003457515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="HSX71570.1"
                     /translation="VLYRLERPETLSGTALDVPLQLLNNGAFKLQMSPTTGLVQSLST
                     PLPQVVLGASLTISLLLVAALALALENARRAGATQQANRRLRIEAERREDSERHLRDS
                     RERLQLVLDLTDSSHDGLFIFDTRSRELLHMNQATYAGLGYRAEQFAELLRDHPDQLL
                     PGFDEWLEQVREAQRDHQSRIFQRELCRRDGSRRPAEINTQLVRLGDREFLIAVSRDN
                     SERLELEARLQRLSQQDGLTGLYNRRFFDQQLHSEWRRLRRVGAPLALLMLDIDHFKA
                     FNDTLGHLAGDDALRQVGKALQDSLQREGDVACRYGGEEFAIILVNTGLEGGEHVAAR
                     VHDLVAELAIAHPGSPQKRLTLSIGLAIAEPVGEEQPGSLVAHCDQALYRAKHEGRDR
                     TCVWSEATDGEAR"
     gene            complement(1233..1592)
                     /locus_tag="VLF16_11625"
     CDS             complement(1233..1592)
                     /locus_tag="VLF16_11625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007161339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HSX71571.1"
                     /translation="MASGGGEEEENAAPKVAYVSLVPALVGNFGAGPKLKFFKADIAL
                     RVTGTEAEEKVEHHEPLIRNQLVMLFSQQTDASMADEAAKEKLRQDALKQVQDVLTQE
                     EGAPIVEDLLFNNLIIQ"
BASE COUNT          263 a          578 c          528 g          246 t
ORIGIN      
        1 ggtcctttac cgcctcgagc gccccgaaac gctatccggc acggccctcg acgtaccgct
       61 gcagttgctc aacaacggcg ccttcaagct gcagatgagc cccaccaccg gcctggtgca
      121 gagcctgtcg acgccactac cgcaggtggt actgggcgcc agcctgacca tcagcctgct
      181 gctggtggcc gcgctggccc tggccctgga gaacgcccgc cgcgccggcg ctacccagca
      241 ggccaatcga cgcctgcgga tcgaggccga acgccgcgag gacagcgaac gccacctgcg
      301 tgacagccgc gagcgcctgc agctggtgct cgacctcacc gactccagcc acgacggact
      361 gttcatcttc gatacccgca gccgcgagct gctgcacatg aaccaggcca cctatgcggg
      421 cctgggctat cgcgccgaac agttcgccga gctgctgcgc gaccatcctg accagttgct
      481 gccgggtttc gacgaatggc tggagcaggt ccgcgaggcc cagcgagacc atcagtcgcg
      541 catattccag cgcgagctgt gccgccgcga cggcagtcgc cgaccggccg agatcaatac
      601 ccaactggta cgtctgggcg accgcgaatt cctcatcgcc gtgtcccgcg acaacagcga
      661 acgcctggaa ctagaggcgc gcctgcagcg cctgtcgcaa caggatggcc tgaccggcct
      721 gtacaaccgg cgcttcttcg accagcagct gcacagcgag tggcgccgcc tgcgccgggt
      781 gggcgcgccg ctggcgctgc tgatgctgga tatcgatcat ttcaaggcgt tcaacgacac
      841 cctcggccac ctggccggcg atgatgccct gcgtcaggtc ggcaaggcgc tacaggacag
      901 cctgcagcgc gagggcgacg tggcctgccg ctacggcggc gaggagttcg ccatcatcct
      961 ggtcaacacg ggcctggagg gcggcgagca tgtggcggcg cgggtgcatg acctggtcgc
     1021 cgagctcgcc atcgctcacc ccggcagccc acagaaacgc ctgaccctga gcatcggcct
     1081 ggccatcgcc gagccggtcg gcgaggagca gccgggcagc ctggtcgcgc actgcgacca
     1141 ggccctgtac cgggccaagc acgagggccg cgaccgcacc tgcgtgtgga gcgaggcaac
     1201 ggacggcgag gcgcgctagc cgccggtgcg gatcactgga tgatcaggtt gttgaacagc
     1261 aggtcctcga cgatcggcgc gccctcttcc tgggtcagca cgtcctgcac ctgcttcagc
     1321 gcatcctggc gcagcttctc cttggcggcc tcgtcggcca tgctggcgtc ggtctgctgg
     1381 gagaacagca tcaccagctg gttgcggatc agcggttcgt ggtgctcgac cttctcctcc
     1441 gcctcggtgc cggtcacgcg cagggcgatg tcggccttga agaacttcag cttcggcccg
     1501 gcgccgaaat tgcccaccag cgccggcacc aggctgacat aggcgacctt gggcgcggcg
     1561 ttctcttcct cctcgccgcc accgctggcc agggcggcgc acggcaggat caggg
//
LOCUS       DATIHC010000702         4158 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11228, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000702 DATIHC010000000
VERSION     DATIHC010000702.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4158)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4158
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11228"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..271
                     /locus_tag="VLF16_11630"
     CDS             <1..271
                     /locus_tag="VLF16_11630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004668 - protein-arginine deiminase
                     activity [Evidence IEA];
                     GO_process: GO:0009446 - putrescine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HSX71572.1"
                     /translation="EECAGVDAAQGSQERSPEVRLAGSYVNFLIVNGGIVAPSFDDPK
                     DEEARAILQRVFPEHRVVMVPGREILLGGGNIHCITQQQPAPQKR"
     gene            complement(532..1716)
                     /gene="desA"
                     /locus_tag="VLF16_11635"
     CDS             complement(532..1716)
                     /gene="desA"
                     /locus_tag="VLF16_11635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="delta-9 fatty acid desaturase DesA"
                     /protein_id="HSX71573.1"
                     /translation="MWYNGFLDLSPWQLVAVTLVLTHITIVSVTVYLHRYSAHRALEL
                     HPALKHFFRFWLWMTTGQNTREWTAIHRKHHAKCETVDDPHSPVIKGLGTVLRKGAEL
                     YQEEAKNEETLRIYGKNCPDDWLERNVYSRFPMSGIILMAIIDLALFGVLGMTVWAVQ
                     MMWIPVWAAGVINGLGHAVGYRNFECRDAATNLVPWGILIGGEELHNNHHTYPNSAKL
                     SVKKWEFDMGWAWIKLFSVLGMAKVQRVAPIAHRVEGKHSLDMDTAMAILNNRFQIMA
                     QYRKLVIKPLVKQELAKADESVRHLFRRGKRLLSRETSLLEDKHHARISELLAQSQAL
                     KVIYEKRIALQQIWAKTSSNGHDMLEAIKQWVHEAEASGIQSLREFAEQLKTYSLRPA
                     TA"
     gene            1882..4149
                     /locus_tag="VLF16_11640"
     CDS             1882..4149
                     /locus_tag="VLF16_11640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSX71574.1"
                     /translation="MKFQRSPLQLTLLYLIVASLWILCSDTLLLRLGFERVALAHYQT
                     LKGFGFVLFSGFALFYALSQHHAEQLRARVALKRSEERLVLALDSAQEGLWDWDMKSD
                     RVYYSRRYCEILGYTPEEFGDDREAWLSRLHPEDKDLAAERLRTLLDKRSPYYESIFR
                     LRHHNGDYRWLYARGQLLLNEAGEPSRFIGTSSDITQRRADEDSLRQAAAVFDSTLEG
                     VLVTDREQRIVHVNPAFTRITGYTAEEVLGRQPNMFKSGRHDDAFYRALWHALNERGT
                     WSGEIWNRRKDGEVFPIWQCLRGVRDENGHLSHYVAVFSDVSAIKRSQHELDYLAHHD
                     PLTTLPNRLLFGERIEQALQRVRGEQRRGALLLVDLDHFKIVNESLGHNTGDRLLRLI
                     GERLNDAFGPGVTLARLGGDEFGLLSSDCAQAEQASQLALQLLDCLREPFMVDDQPLF
                     IGASIGISLFPDDGDSVEQLLRNADSALFRAKSSGRQTFSFYSQDMTTVARQRVRLES
                     ELRQALEQDQLRVHYQPIHALESGAMLGAEALVRWQHPERGLVPPGEFIPVAEDSGLI
                     GAIDAWVLEQACAQMRRWQAAGLSLEFIAVNVSSRLFSRGELDLRVERVLRASGLSPQ
                     QLELEVTESAVMDDPERASELLEQLHRLGVRLAIDDFGTGYSSLARLKSLPVHKLKLD
                     QSFVRGLPQDREDAAIARAVVTLGHSLGLRVLAEGIETAEQAAFLREIGCSLGQGYWF
                     GRPQPAEQLSPPASA"
BASE COUNT          686 a         1415 c         1369 g          688 t
ORIGIN      
        1 ggaggagtgc gccggcgtcg acgccgccca gggcagccag gagcgcagcc ccgaggtgcg
       61 cctggccggc tcctacgtca acttcctgat cgtcaacggc ggcatcgtcg caccgagctt
      121 cgacgacccc aaggacgaag aagcgcgcgc catcctgcaa cgcgtgttcc ccgagcaccg
      181 cgtggtgatg gtcccgggcc gcgagatcct cctcggcggc ggcaatatcc actgcatcac
      241 ccagcagcaa ccggcgccgc aaaaacgctg attgcagccg gaccagagcc cgcttcggcg
      301 ggctttttca tgggcaacgg aaaggcccac cgggttaacg cgcttccgcg aggcatcgca
      361 gctccgaacg tagcccggat gcaatccggg aaatggagcc gcctgcttcc cggattgcat
      421 cggctacgcc gagcgctttc cggctcattc gctcaaaagc ccggcatggc cgccacggcg
      481 gctgggcata aaaaagcccg ccggaggcgg gctcttgcgg atcgcggcga ctcaggcggt
      541 ggccgggcgc agcgagtagg tcttcagctg ttcggcgaac tcgcgcaggg actggatgcc
      601 gctggcctcg gcctcgtgca cccactgctt gatcgcctcg agcatgtcgt ggccgttgct
      661 gctggtcttg gcccagatct gctgcagggc gatgcgcttc tcgtagatca ccttgagcgc
      721 ctggctctgc gccagcagct cgctgatgcg cgcgtggtgc ttgtcttcca gcaggctggt
      781 ctcgcgcgac agcaggcgct tgccgcggcg gaacaggtgg cgcaccgact cgtcggcctt
      841 ggccagttcc tgcttgacca gcggcttgat caccagcttg cggtactgag ccatgatctg
      901 gaagcggttg ttgaggatgg ccatggcggt gtccatgtcc aggctgtgct tgccctcgac
      961 gcggtgggcg atgggcgcca cgcgctgcac cttggccatg ccgagtacgc tgaacagctt
     1021 gatccaggcc cagcccatgt cgaactccca cttcttcacc gacagcttgg cgctgttcgg
     1081 gtaggtgtgg tggttgttgt gcagctcttc gccaccgatc aggatgcccc agggcaccag
     1141 attggtcgcg gcgtcgcggc actcgaagtt gcggtagccg acggcatggc cgaggccatt
     1201 gatcacgccc gcggcccaca ccggaatcca catcatctgc accgcccaca cggtcatgcc
     1261 gagcacgccg aacagggcca ggtcgatgat cgccatgagg atgataccgc tcatggggaa
     1321 gcggctgtag acgttgcgct cgagccagtc atccgggcag ttcttgccgt agatgcgcag
     1381 ggtttcctcg ttcttcgcct cttcctggta cagctccgcg cccttgcgca gcacggtgcc
     1441 gagacccttg atcaccgggc tgtgcgggtc atcgacggtc tcgcatttgg cgtggtgctt
     1501 gcggtggatc gcggtccatt cacgagtgtt ctggccggtg gtcatccaca gccagaaacg
     1561 gaagaagtgc ttgagcgccg ggtgcaattc cagcgcgcgg tgcgcggaat agcggtgcag
     1621 atagacggtg acgctgacga tggtgatgtg ggtcagcacc agggtgactg ccaccagttg
     1681 ccacggcgac agatcgagaa aaccgttgta ccacatgaag ggtattgcct cgcggggaga
     1741 agatcgcggc cggggccctg gcctgccggc attatcccca agccggggga gaaaaccagt
     1801 gggtcattta gacgcgaatg cactggatgc cttcgtatct ataatgtgcc gcagctctca
     1861 ttcggcctgg tcgccccctt gatgaaattt cagcgcagcc cgctgcagct caccctgctt
     1921 tatctgatcg tcgcctccct gtggattctg tgcagcgaca ccctgcttct gcggctgggc
     1981 ttcgagcgcg ttgcgctggc ccactaccag acgctgaaag gctttggatt cgtgctgttc
     2041 agcggcttcg ccctgttcta tgcgttgagc cagcaccacg cggaacagtt gcgcgcacgc
     2101 gttgcgctga agcgcagcga ggagcgcctg gtgctggcac tggattccgc gcaggaggga
     2161 ctctgggact gggacatgaa gagcgaccgg gtgtactact cgcgccgcta ctgcgaaata
     2221 ctcggttaca caccggagga gttcggcgac gaccgggaag cctggttgtc gcgcctgcac
     2281 ccggaggaca aagatctcgc cgcggaacgt ctgcgcaccc tgctcgacaa gcgcagcccc
     2341 tactacgaga gcatcttccg cctgcgccac cacaacggcg attaccgctg gctctacgcc
     2401 cgcggccagc tactgctgaa cgaggccggc gaaccgagcc gcttcatcgg cacctccagc
     2461 gacatcaccc agcgccgcgc cgacgaggac agcctgcgcc aggccgccgc ggtgttcgac
     2521 agcaccctgg agggcgtgct ggtcaccgac cgcgagcagc gcatcgtcca cgtcaatccg
     2581 gccttcaccc gcatcaccgg ctacaccgcc gaggaagtgc tcgggcgcca gccgaacatg
     2641 ttcaagtccg gtcgccacga cgacgccttt taccgcgccc tgtggcatgc gctgaacgag
     2701 cgcggcacct ggagcgggga aatctggaac cggcgcaagg acggcgaggt gttccccatc
     2761 tggcagtgcc tgcgcggcgt gcgcgacgag aacggccacc tcagccacta cgtcgcggtg
     2821 ttttccgacg tcagcgccat caagcgctcc cagcacgagc tggactacct ggcccaccac
     2881 gacccgctga ccaccctgcc caaccgcctg ctgttcggcg agcgcatcga gcaggccctg
     2941 cagcgggtgc gcggcgaaca gcggcgcggc gcgctgctgc tggtcgacct cgaccacttc
     3001 aagatcgtca acgagagcct tggccacaac accggcgacc gcctgctgcg gctgatcggc
     3061 gaacgcctga acgacgcctt cggccccggc gtcacgctcg cccgcctcgg tggcgacgaa
     3121 ttcggcctgc tcagcagcga ctgcgcccag gccgaacagg cctcgcagct ggccctgcag
     3181 ctactggact gcctgcgcga acccttcatg gtcgacgacc agccgctgtt catcggcgcc
     3241 agcatcggca tcagcctgtt tcccgacgac ggcgacagcg tcgagcagct gctgcgcaat
     3301 gccgactcgg cgctgttccg cgccaagagc agcgggcgcc agacgttcag cttctacagc
     3361 caggacatga ccaccgtcgc ccgccagcgc gtgcgcctgg aatcggagct gcgccaggcg
     3421 ctggagcagg accagctgcg cgtgcactac cagccgatcc acgcgctgga gagcggcgcc
     3481 atgctcggtg ccgaggcgct ggtgcgctgg cagcacccgg agcgcggtct ggtgccgccc
     3541 ggcgagttca tcccggtggc cgaggacagc ggcctgatcg gcgccatcga cgcctgggtg
     3601 ctggagcagg cctgcgcgca gatgcgccgc tggcaggcgg ccgggctgag cctggagttc
     3661 atcgcggtca acgtctccag ccggctgttc agccgcggcg agctggacct gcgggtggag
     3721 cgggtgttgc gcgccagcgg cctgagcccc cagcagctgg agctggaggt gacggaaagc
     3781 gcggtgatgg acgatcccga gcgcgccagc gagctgctcg agcagctgca ccgcctgggc
     3841 gtgcggctgg ccatcgacga cttcggcacc ggctattcgt cgctggcccg cctgaagagc
     3901 ctgccggtgc acaagctcaa gctcgaccag agcttcgtcc gcggcctgcc gcaggaccgc
     3961 gaggacgcgg ccatcgcccg cgcggtggtc accctcggcc acagcctagg cctgcgagtg
     4021 ctggccgaag gtatcgagac ggccgagcag gccgcattcc tgcgcgagat cggctgcagc
     4081 ctgggccagg gctactggtt cggccgcccg cagccggccg agcagctctc gccgccggcc
     4141 agcgcctgag gcgcccac
//
LOCUS       DATIHC010000703         2987 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_20652, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000703 DATIHC010000000
VERSION     DATIHC010000703.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2987)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2987)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2987
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20652"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..859
                     /locus_tag="VLF16_11645"
     CDS             <1..859
                     /locus_tag="VLF16_11645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71575.1"
                     /translation="SKLRFTALLALFCSASLSAEPVVYPLHSKGPDPEAYVVELLRQA
                     LAKSGGDYQPRPSHRAMTQSRAEHSLERNDGAVQLMWTMTTRAREESLLPVRIPIYKG
                     LIGWRVPLIRREDNRWLAKVKTLKDLRPMRFGQRADWPDTRILRDNGLQVITSQSYVS
                     LFRMLDAGRFDLFPREVVVAWNEQARVAQEGLALEVDEHIALHYPSAFYFFTSRARAD
                     LAAGIERGLEAMIADGSFEALFQQYHGETLKRAGLGKRQIIELENLDLPAQTPFKRQE
                     LWYRPGVSR"
     gene            1037..1435
                     /locus_tag="VLF16_11650"
     CDS             1037..1435
                     /locus_tag="VLF16_11650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HSX71576.1"
                     /translation="MIRISTESGLRHSIEIGEHLLHTDVPASFGGTASGPEPHDLFDA
                     ALGACKALTLMLYAKQRGLPLESLDVRVARDDSQERQGTYRLAVELDLHGALDDEQRQ
                     QLLRIADKCPIHKLMTSVEVQVETRLGDGA"
     gene            1432..2295
                     /locus_tag="VLF16_11655"
     CDS             1432..2295
                     /locus_tag="VLF16_11655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003240818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HSX71577.1"
                     /translation="MSEPLLITPKAEDIAGQPILRPLPSAKCRSVGPFVFFDHMLEKV
                     YPAGSGMNIDQHPHIGLSTLTYLFEGELQHKDSLGSDQRVQPGDVSWMTAGRAVAHVE
                     RTPESLWQSGSRLHGLQVWLALPQHLEQGEPSYSHHPAASLPRSEAMGVRITLIAGSG
                     FCLESAVPVPSPTLYAELKLAAGASLLIPAEHRERALYLIEGEAQLDGADLPLRSLAV
                     LPEGEELLLSACGECHLALIGGEPLGPRRMYWNFVASDAALLEQAKQNWTAWNWPRVP
                     GESERIRLPGS"
     gene            2371..>2987
                     /locus_tag="VLF16_11660"
     CDS             2371..>2987
                     /locus_tag="VLF16_11660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017677157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71578.1"
                     /translation="MSLVRRLLAASLLLTPLVAYANLPTLEPEPGTTARVERDGERYL
                     LLQADGSRIELEIPEANEAEPRFEVEDYDFDGHDDLGVSLSAGMVNQVYHLYLYRPAQ
                     RRFELLTMPETLIDRLNCSGFWGLERKVEERALYSSCRSGPRWYHDAFRFDRGRPWLY
                     KTLQVQDDYSPDYPYLFFPLFEKTFDPQGEVVASRAIDDDGEPQT"
BASE COUNT          493 a         1080 c          958 g          456 t
ORIGIN      
        1 gtccaagctc cgcttcaccg ccctgctcgc cctgttctgt tcggcttcgc tgagcgccga
       61 gccggtggtc tacccgctgc actccaaggg gcccgatccg gaggcctatg tcgtcgaact
      121 gctgcgccag gccctggcca aaagcggtgg cgactaccag ccgcgcccct cgcaccgcgc
      181 catgacccag agccgcgcgg agcattctct ggagcgcaac gacggcgccg tgcagctgat
      241 gtggaccatg accacccgcg cccgcgagga gagcctgctg ccggtccgca tcccgattta
      301 caaaggcctg atcggctggc gcgtgccttt gatacgacgt gaggacaacc gctggctggc
      361 caaggtgaag accctgaaag acctcaggcc gatgcgcttc ggccagcgcg ccgactggcc
      421 ggacacccgc atcctgcgcg acaacggcct gcaggtgatc accagccaga gctacgtcag
      481 cctgttccgc atgctcgacg ccggccgctt cgacctcttt ccccgcgagg tcgtggtggc
      541 ctggaacgag caggcccgtg tcgcccagga gggcctggcc ctggaggtcg acgagcacat
      601 cgccctgcac tacccgagcg ccttctactt cttcacctcg cgcgctcgtg ccgacctggc
      661 cgcgggcatc gagcgcggtc tggaagcgat gatcgccgat ggcagtttcg aggccctgtt
      721 ccagcagtac cacggcgaga ccctgaaacg cgccgggctc ggcaaacgcc agatcatcga
      781 gctggagaac ctcgacctgc cggcgcagac gcccttcaag cgccaggagc tctggtaccg
      841 gccgggcgta tcgcgatagc gtcgggcgcc gcgcatccac acgcaccgcg ccctcggcaa
      901 ccgatgacct ctgctcagcg cagctaccga tggccgtctg ctgcgcgtgc ttggcgccga
      961 tgtgcgcctt tccgcgctgg tctgaagatc gccgcctggg ctaggctggc gcatccaacc
     1021 tagccaggga accaccatga tccgtatcag caccgagtcc ggcctgcgcc acagcatcga
     1081 gatcggcgaa cacctgctgc acaccgatgt gcccgcgtca ttcggcggca cggcctccgg
     1141 ccccgagccg cacgacctgt tcgatgccgc cctgggcgcc tgcaaggccc tgaccctgat
     1201 gctctatgcc aagcagcgcg gcctgccgct ggagagcctg gacgtacgtg tggcccgcga
     1261 tgacagccag gaacgccagg gcacctaccg cctggccgtg gagttggacc tgcacggcgc
     1321 cctggatgac gagcagcgcc agcaactgct gcgcatcgcc gacaagtgcc cgatccacaa
     1381 actgatgacc agcgtcgagg tgcaggtgga aacccgcctg ggcgacggcg catgagcgag
     1441 ccgctgctga tcacgcccaa ggccgaggac atcgccggcc agccgatcct gcgcccgctg
     1501 ccctcggcca agtgccgcag cgtcgggccc ttcgtgttct tcgatcacat gctggagaag
     1561 gtctacccgg ccggcagcgg catgaacatc gatcagcacc cgcacatcgg tctgtcgacc
     1621 ctcacctacc tgttcgaggg cgagctgcag cacaaggaca gcctcggctc ggaccaacgg
     1681 gtacagcccg gcgacgtcag ctggatgacc gccgggcgcg ccgtcgcgca tgtcgagcgc
     1741 actccggaat ccctgtggca gagcggctcg cgcctgcatg gcctgcaggt atggctggcc
     1801 ctgccgcaac acctggagca aggcgagccg agctacagcc accatcccgc cgccagcctg
     1861 ccgcgcagcg aggccatggg cgtgcggatt accctgatcg ccggctccgg cttctgcctg
     1921 gagtcggcgg tgccggtgcc ctcgcccacc ctctacgccg agctgaagct cgcagccggc
     1981 gccagcctgc tgattcccgc cgaacaccgc gagcgcgccc tgtatctgat cgagggcgaa
     2041 gcgcagctgg acggcgccga tctgccgctg cgcagcctgg ccgtgctgcc ggagggcgag
     2101 gaactgctgc tcagcgcctg cggcgaatgc cacctggcgt tgatcggcgg cgagccgctg
     2161 gggccacggc gcatgtactg gaacttcgtg gccagcgacg cggcgctgct ggagcaggcc
     2221 aaacagaact ggacggcctg gaactggcca cgggtgcccg gcgaaagcga gcgcatccgc
     2281 ctgcccggca gctgattgcc agcccggtca cgggttggcc tgcccatcag gcggtaaact
     2341 gccggcctcc gttcgcaaag gattgctgcc gtgtccctcg ttcgtcgcct gctcgccgcc
     2401 tcgctgttgc tcacgccgct ggtcgcctac gcgaacctgc cgacactcga acccgagccc
     2461 ggcacaacgg cccgggtgga gcgggacggc gagcgctatc tgctactgca agcggacggc
     2521 agccggatcg agctggagat tcccgaggcg aacgaggcgg agccgcgctt cgaggtcgag
     2581 gattacgact tcgacggcca cgacgacctg ggagtgagcc tgtccgccgg catggtcaac
     2641 caggtctatc acctgtacct ctaccgtccc gcccagcgcc gcttcgaact cctgacgatg
     2701 ccggagacgc tgatcgaccg cctcaactgc tcgggcttct ggggcctgga gcgcaaggtc
     2761 gaggagcgcg ccctgtacag cagctgccgc agcggcccgc gctggtatca cgacgccttc
     2821 cgcttcgacc gtggccggcc ctggctgtac aagaccctgc aggtgcagga tgactacagc
     2881 ccggattatc cctacctgtt cttcccgctg ttcgaaaaga ctttcgaccc gcagggcgag
     2941 gtggtggcca gccgcgccat cgacgatgac ggcgagccac agacctg
//
LOCUS       DATIHC010000704         2328 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_20661, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000704 DATIHC010000000
VERSION     DATIHC010000704.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2328
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20661"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            239..1321
                     /gene="glnL"
                     /locus_tag="VLF16_11665"
     CDS             239..1321
                     /gene="glnL"
                     /locus_tag="VLF16_11665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020312124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(II)"
                     /protein_id="HSX71579.1"
                     /translation="MINDALHRLLLDNLTTATILLNAELRLEYMNPAAEMLLAVSGQR
                     SHGQFISELFTESPEALSSLRQAVEQAHPFTKREAQLTSLAGQTITVDYAVTPILNRG
                     QTLLLLEVHPRDRLLRITKEEAQLSKQETTKLLVRGLAHEIKNPLGGIRGAAQLLARE
                     LPEEGLRDYTNVIIEEADRLRNLVDRMLGSNKLPSLAMTNIHEVLERVASLVEAEAQG
                     SVTLVRDYDPSIPDLLIDREQLIQAMLNIVRNALQALSAQSDLRLGRISLRTRTFRQF
                     TIGHTRHRLVVKVEIIDNGPGIPPELQETIFYPMVSGRPDGTGLGLAITQNIISQHQG
                     LIECESHPGHTVFSIFLPLDQGAAQS"
     gene            1318..>2328
                     /gene="ntrC"
                     /locus_tag="VLF16_11670"
     CDS             1318..>2328
                     /gene="ntrC"
                     /locus_tag="VLF16_11670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(I)"
                     /protein_id="HSX71580.1"
                     /translation="MSRSETVWIVDDDRSIRWVLEKALQQEGITTQSFDSADGVLTRL
                     SRQQPDVIISDIRMPGASGLDLLARIRDMHPRLPVIIMTAHSDLDSAVASYQGGAFEY
                     LPKPFDVDEAVSLVKRANQHAQEQQSLEAPASLSRTPEIIGEAPAMQEVFRAIGRLSH
                     SNITVLINGESGTGKELVAHALHRHSPRAASPFIALNMAAIPKDLMESELFGHEKGAF
                     TGAANQRRGRFEQADGGTLFLDEIGDMPADTQTRLLRVLADGEFYRVGGHTPVKVDVR
                     IIAATHQNLESLVQAGKFREDLFHRLNVIRIHIPRLSDRREDIPALAEHFLASAAQEL
                     SVE"
BASE COUNT          417 a          878 c          683 g          350 t
ORIGIN      
        1 ccgccgaacc gccgaagggc atcatcagca tcctcccctt cgtcgactga caatgcgcac
       61 caaatcggtg cgcatcgctg caccgatttc tatactctcc ccgttttggt tcactcgaca
      121 cctcgccggc tgcgcccaaa cgtagcccga gggcggcggc tggcagaaat tcgcgtcttt
      181 tcggggcctt ggtttgcttc ttgcattttc cagcccatcg ccgggacatc tacctgccat
      241 gatcaacgac gccctgcacc gcctactgct ggacaacctg accaccgcga ccattctgct
      301 caacgccgag ctgcgcctgg agtacatgaa cccggccgcg gagatgttgc tggcggtcag
      361 cggccagcgc agccacggcc agttcatcag cgagctgttc accgaatccc ccgaggccct
      421 gagttcgcta cgtcaggcgg tcgagcaggc gcatcccttc accaagcgcg aagcccagct
      481 cacctcgctg gccggccaga cgatcaccgt cgactatgcg gtgacgccca ttctcaaccg
      541 cggccagacc ctgctactgc tggaagtgca cccgcgcgac cgcctgctgc gcatcaccaa
      601 ggaagaggcg cagctgtcca agcaggagac caccaagctg ctggtgcgcg gcctggccca
      661 cgagatcaag aacccgctcg gtggcatccg cggcgccgcc cagctgctgg cccgcgagct
      721 gccggaagaa ggcctgcgcg actacaccaa cgtgatcatc gaggaggccg accggctgcg
      781 gaacctggtc gaccgcatgc tcggctcgaa caagctgccc tccctggcca tgaccaacat
      841 ccacgaggtg ctggagcggg tcgccagcct ggtcgaggcc gaggcccagg gcagcgtcac
      901 cctggtgcgc gactacgacc cgagcatccc cgacctgctg atcgaccgcg agcagctgat
      961 ccaggccatg ctcaacatcg tgcgcaacgc cctgcaggcc ctctcggccc agagcgacct
     1021 gcgcctgggc cgcatcagcc tgcgcacccg caccttccgc cagttcacca tcggccacac
     1081 ccgccatcgc ctggtggtga aggtggagat catcgacaac ggcccgggca tcccgccgga
     1141 gctgcaggaa accatcttct accccatggt cagcggtcgc cccgacggca ccggcctggg
     1201 cctggccatc acccagaaca tcatcagcca gcatcagggc ctgatcgaat gcgagagcca
     1261 tccgggccat accgtgttct cgatcttcct gcccctggac caaggagccg cacagtcatg
     1321 agccgcagtg aaaccgtctg gatcgtcgac gacgaccgct ccatccgctg ggtgctggag
     1381 aaggccctgc agcaggaggg catcaccacc cagagtttcg acagcgccga tggcgtgctc
     1441 acccgcctgt cccgccagca gccggacgtg atcatttccg acatccgcat gcccggcgcc
     1501 agtggcctgg acctgctggc ccgcatccgc gacatgcatc cgcgcctgcc ggtgatcatc
     1561 atgaccgccc actccgacct ggacagcgcg gtggcctcct accagggcgg cgcgttcgaa
     1621 tacctgccca agccgttcga cgtcgacgag gcggtgtccc tggtcaagcg cgccaaccag
     1681 cacgcccagg aacagcagag cctggaggct ccggcctcgc tctcgcgcac cccggagatc
     1741 atcggcgagg cgccggcgat gcaggaggtg ttccgcgcca tcggccgcct gagccactcc
     1801 aacatcaccg tgctgatcaa cggcgagtcc ggcaccggca aggagctggt cgcccacgcc
     1861 ctgcaccgcc acagcccgcg cgcggcatcg ccgttcatcg cgctgaacat ggcggcgatt
     1921 cccaaggacc tgatggagtc cgagctgttc ggccacgaga agggcgcttt caccggcgcg
     1981 gccaaccagc gccgcggccg cttcgagcag gccgacggcg gcaccctgtt cctcgacgag
     2041 atcggcgaca tgccggccga cacccagacc cgcctgctgc gcgtgctggc cgacggcgag
     2101 ttctaccgcg tcggcggcca tacgccggtg aaggtcgacg tgcgcatcat cgccgccacc
     2161 caccagaacc tcgaatccct ggtgcaggcc ggcaagttcc gcgaggacct gttccaccgc
     2221 ctcaacgtca tccgcatcca cattccgcgc ctgtccgatc gccgcgagga catcccggca
     2281 ctcgccgagc acttcctcgc cagcgccgcg caggaactgt cggtggag
//
LOCUS       DATIHC010000705         2670 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13500, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000705 DATIHC010000000
VERSION     DATIHC010000705.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2670
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13500"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..441
                     /locus_tag="VLF16_11675"
     CDS             <1..441
                     /locus_tag="VLF16_11675"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSX71581.1"
                     /translation="VVREAVAFLRHELSSQRVLLELHLRAGLPKLNGDRTLLQQVLVN
                     LLVNATQAMAQTECEERRIVLSTRRESPEWLLLTVTDSGPGIADEHVQRLFDSFFTTK
                     RNGMGMGLPICRSIVESCGGTIAVEPRPVGQGACFAIRLPALPG"
     gene            620..1423
                     /locus_tag="VLF16_11680"
     CDS             620..1423
                     /locus_tag="VLF16_11680"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HSX71582.1"
                     /translation="MPHTAPLLILLLALLPTLPAAAAAKPIPAFNTYEAAPFLIAGKQ
                     GLVPELVDQLNRLLVGRYRLQLRNLPRARLLQQHLREPAQFDGVVMLLSPGFIGDAQQ
                     RDYLWSKPLFQDHNVLVMRAEQAPAEALQGKRLLAVRGQRLRLLDELVKNGQLQREDF
                     NNELQTLQMVAAGRGDLTFMNRLMFHHLSRKTGLGERLVAVPVPGGEAGFTRHILVGR
                     HVGELLAPLNAAIDALHCEPEWRTTAARYGFVALPCQAANELSRAPARP"
     gene            complement(1398..1931)
                     /locus_tag="VLF16_11685"
     CDS             complement(1398..1931)
                     /locus_tag="VLF16_11685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003288185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71583.1"
                     /translation="MNAQLLELITLISSGCMTDEEIARIADEAAQAYADPAAFLAANP
                     DINYDDDFPIPLGEWVVIGSLPETVLFQADSYDQLLQQIIDSFGPQVSFNIKPKQLQK
                     VEPLKALNRIQVQLSALYKEKSGYVLVDLSEPLDDELQCVLVYTSDLPRVRALAVEVG
                     IYAAPALEALKAELEPD"
     gene            complement(2278..>2670)
                     /locus_tag="VLF16_11690"
     CDS             complement(2278..>2670)
                     /locus_tag="VLF16_11690"
                     /inference="COORDINATES: protein motif:HMM:NF020367.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide lyase family 7 protein"
                     /protein_id="HSX71584.1"
                     /translation="RVLRAPSTQKIIVGQIHGFDARPLIKLQWQKGKLKALIKRHPKG
                     RNEDISHVFATPVDNDLFSYVIELRDGVLAVEVNGERITHDVYAEDPAWRDVTFYFKA
                     GAYVQDDDEDGDDDLGEVQFTQLNVRHD"
BASE COUNT          425 a          909 c          874 g          462 t
ORIGIN      
        1 gtggtgcgcg aggccgtcgc attcctgcgc cacgagctga gcagccagcg ggtgctgctg
       61 gaactgcacc tgcgcgccgg gctgccgaag ctgaacggcg accgcaccct gttgcagcag
      121 gtgctggtca acctgctggt caatgccacg caggccatgg cccagaccga atgcgaggag
      181 cgccgcatcg tgctctccac ccgccgggag agtcccgaat ggctgctgct gacggtgacg
      241 gacagcggcc ccggcatcgc cgacgagcat gtgcagcggc tgttcgacag ttttttcacg
      301 accaagcgca acggcatggg catgggcctg ccgatctgcc gcagcatcgt cgagagctgc
      361 ggcggcacca ttgccgtgga accgcgcccc gtcggccagg gcgcctgctt cgccatccgc
      421 ctgccggcgc tgccaggctg agccgaatcg ggccgcagcc ctgccctctc gtctcgccgg
      481 cgaagcgacg gtgatccggg cgcaggatcg aatcgcgccg ccggcggtca atcacaacac
      541 gagcaatggg aatcccgcgc cggccccgcc ccgcatcgaa ccggccgcga ttccgggtgg
      601 cacaccccag gaccccggca tgccgcacac cgccccactc ctaatcctcc tgctggcgct
      661 gttgccgaca cttcctgccg cggccgcggc aaagccgatt cccgccttca acacttacga
      721 agccgccccc ttcctgatcg ccggcaagca gggcctggtg cccgagctgg tcgaccaact
      781 gaaccgcttg ctggtcgggc gctaccgcct gcagttgcgc aacctgccac gcgcccgcct
      841 gctgcagcag cacctgcgcg agccggcgca gttcgacggc gtggtgatgc tgctcagccc
      901 cgggttcatc ggcgatgcac agcagcgtga ctacctgtgg agcaagccgc tgttccagga
      961 tcacaacgtg ctggtcatgc gggcggagca ggcgccggcg gaagcgctgc agggcaagcg
     1021 cctgctcgcc gtgcgcggcc agcggctgag gctgctcgac gagctggtga agaacggcca
     1081 gctgcagcgg gaagatttca acaacgagct gcagaccctg cagatggtgg ccgccgggcg
     1141 cggcgacctg accttcatga accggctgat gttccatcac ctgagccgca agaccgggct
     1201 gggcgagcgc ctggtggccg ttccggtacc cggcggagag gccggcttca cgcggcacat
     1261 tctggtgggc aggcatgtcg gcgagctgct ggcgccgctg aacgcggcca tcgacgccct
     1321 gcactgcgag cccgagtggc gcaccacggc ggctcgctac ggcttcgtcg ccctgccctg
     1381 ccaggcggcg aacgagctca gtcgggctcc agctcggcct tgagcgcttc gagggccggc
     1441 gccgcgtaga tgccgacctc caccgccagc gcccgcaccc gcggcaggtc gctggtgtag
     1501 acgagcacgc actgcagctc gtcatccagc ggctcgctga ggtccaccag cacgtagccg
     1561 ctcttctcct tgtacagcgc cgagagttgc acctggatgc gattgagcgc cttcagcggc
     1621 tcgaccttct gcaactgctt gggcttgatg ttgaagctca cctgcggacc gaaggagtcg
     1681 atgatctgct gcagcagctg gtcgtaggag tccgcctgga acagcacggt ctccggcagg
     1741 ctgccgatca ccacccactc gcccagcgga atcgggaaat cgtcgtcgta gttgatgtcc
     1801 ggattggcag ccaggaaggc cgccgggtcg gcataggcct gggcggcctc gtcggcgatg
     1861 cgggcaatct cctcgtcggt catgcagccg gagctgatca gggtgatgag ttcgaggagc
     1921 tgagcattca tggggcggtc ctaggcggtg aaacgggcgc ataggatagc cgccgaccag
     1981 tcgtggcgca cgttcagccg ggtgagcggc acctcgcctg ccagtcggga gacgcattca
     2041 gcggcgtgaa tgcacctcgc cttctagtgg gtgcgcgctc tattgaatga accgaccttt
     2101 tccttcggtc gcggcacgtt caactgagcg aactgcacct cgcctttcag ccgtggtgca
     2161 cgtccccctg gtgcatcgca cctcttcttc tagtcgtggt gcacgttcaa ctgagtgaaa
     2221 tgcacctcgc ctttcagtcg tggtgcacgt tcaactggac gaaatgcacc tcgcctttca
     2281 gtcgtggcgc acgttcagct gggtgaactg cacctcgccc aggtcgtcgt caccgtcctc
     2341 gtcgtcgtcc tgcacgtagg cgccggcctt gaagtagaag gtcacgtcgc gccaggccgg
     2401 gtcctcggcg tagacgtcgt gggtgatgcg ttcgccattg acctccaccg ccagcacgcc
     2461 gtcgcgcagc tcgatgacat aggagaacag gtcgttgtcc accggcgtgg cgaagacatg
     2521 gctgatgtcc tcgttgcggc ccttgggatg gcgcttgatc agcgccttga gcttgccctt
     2581 ctgccactgc agtttgatca gcgggcgcgc gtcgaaaccg tggatctgcc cgacgatgat
     2641 tttctgcgtg ctcggcgcgc gcagcacgcg
//
LOCUS       DATIHC010000706         2425 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43911, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000706 DATIHC010000000
VERSION     DATIHC010000706.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2425)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2425)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2425
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43911"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1657)
                     /locus_tag="VLF16_11695"
     CDS             complement(<1..1657)
                     /locus_tag="VLF16_11695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013791925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0015343 - siderophore-iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HSX71585.1"
                     /translation="MRSTINRPAPQTLRRAIRAAVLAMPLAALQPAMVGLAHAAEAEQ
                     SLRSYAIAAGPLSSALSQFAGEAEILLAVDGQLTAGKQSPGLQGQYSVDEGLAQLLQG
                     SGLQVVRDASGGYSLSAAGEGGASLSLETTEVEGFALGNALGSMDGYNATHSSVATKT
                     SKELVKTSQSVSVVTAAQIEEQGSRTVAEATRYTAGVLTNPYGNTHRYDYLAMRGIND
                     GSVDNIIIDGLKSMGDPGSFTSLQIDPYFIERIDVLKGPSSVLYGRSNPGGLAALTTK
                     RPEFEQAARIDVSYGSHDYKQTAFDVTGPLNDNVAYRLVGLAKDSDVQVDHVEETRYA
                     LMPSLMLNLGEDTLLNLYAYLQHDPNGGYHGSLPASGTLHKRNGERISGSFFEGDPSV
                     EEFTRTQQMLGYELEHRFNDTWSARQNFRYLDASSDNSQVWGNGYVSATSNELARGFS
                     GGEENLHAWIVDNMLQAEFATGAAQHTVVTGLDYQYSKNKVRYDRDYTSVGPIDVFDP
                     VYDNNDLADLATVSDALRRQKQAGLYVQDLIELGGWNFTAGLRQ"
     gene            complement(1770..>2425)
                     /locus_tag="VLF16_11700"
     CDS             complement(1770..>2425)
                     /locus_tag="VLF16_11700"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HSX71586.1"
                     /translation="RALPWQQWQANQRTAVGEVLGSQLADGSRLWLNTDSALDVDFTA
                     ELRRLALYRGEVLVEAADDARPLWLETAHARLRVQGGRFAVRQQDDGYLVSSQVGALE
                     ILGARRQSLVAGQQAYFDAQWVDRPAPLRHGQQAWTHGILQADDMPLGQFIAELSRYQ
                     HGHLGCDPQVADLRLVGAFPLAEPERIYAALEASLPVRVVRRLPWWISIEPRQSASA"
BASE COUNT          366 a          796 c          848 g          415 t
ORIGIN      
        1 cctgacgcag gccggcggtg aagttccagc cgcccagctc gatcaggtcc tgcacgtaga
       61 ggccggcctg tttctgccgg cgcagggcat cgctgacggt ggccagatcg gccaggtcgt
      121 tgttgtcgta gaccgggtcg aacacgtcga tcgggccgac gctggtgtag tcgcggtcgt
      181 agcgcacctt gttcttcgag tactggtagt ccaggccggt gaccaccgtg tgctgcgccg
      241 cgccggtggc gaattcggcc tgcagcatgt tgtcgacgat ccaggcgtgc aggttctcct
      301 cgccgccgct gaagccgcgg gccagctcgt tgctggtggc gctcacatag ccgttgcccc
      361 aaacctggct gttgtcgctg ctggcatcca ggtagcggaa gttctgccgc gcgctccagg
      421 tgtcgttgaa acggtgctcc agctcataac cgagcatctg ctgggtgcgg gtgaattcct
      481 cgacgctcgg atcgccctcg aagaagctgc cggagatgcg ctcgccattg cgtttgtgca
      541 gggtgccgga ggccggcagg ctgccgtggt aaccgccgtt cgggtcgtgc tgcaggtagg
      601 catagaggtt gagcagcgtg tcttcgccga gattcagcat caggctgggc atcagcgcgt
      661 agcgggtttc ctcgacgtgg tcgacctgca cgtcggaatc cttggccagg ccgaccaggc
      721 ggtaggcgac gttgtcgttg agcgggccgg tgacgtcgaa ggcggtctgc ttgtaatcgt
      781 ggctgccgta ggacacatcg atgcgcgcgg cctgctcgaa ctccggacgc ttggtggtca
      841 gtgccgccag gccgcccggg ttgctgcggc cgtagagcac cgaggacggc cccttgagca
      901 catcgatgcg ctcgatgaag tacgggtcga tctgcaggct ggtgaacgag cccgggtcac
      961 ccatggactt caggccgtcg atgatgatgt tgtccaccga gccgtcattg atcccgcgca
     1021 tggccaggta gtcgtagcgg tgggtgttgc cgtagggatt ggtgagcaca ccggcggtgt
     1081 agcgcgtggc ctcggcgacg gtgcgcgaac cctgctcctc gatctgcgcg gcagtcacca
     1141 cggacacgct ctgcgaggtc ttcaccagct ccttgctggt cttggtcgcc acactgctgt
     1201 gggtggcgtt gtagccgtcc atgctaccca gcgcgttgcc cagggcgaag ccttcgacct
     1261 cggtggtttc cagcgacagg ctggcaccgc cctcgcccgc cgcgctcagc gaatagccgc
     1321 cgctggcgtc gcgcaccacc tgcaggccgc tgccttgcag cagctgggcc aggccctcgt
     1381 ccaccgaata ctggccctgc aggcccgggc tctgcttgcc ggcggtgagc tggccatcga
     1441 ccgccaggag aatctccgcc tcgccggcga actggctcag ggcgctggac agcggacccg
     1501 cggcaatggc gtagctgcgc aggctctgct cggcttcggc ggcgtgggcc aggccgacca
     1561 tggccggctg cagggcggcc agcggcatgg ccagcacggc ggcgcgaatg gcgcggcgca
     1621 gggtctgagg agccggacgg ttgatggtgc tacgcatgga aatcccctgg gtctcgtaag
     1681 aatggccggg cgaaatcgcc cttttgcccc tagagccagg cgagagcgaa aaaggggaac
     1741 cacgaatgga aaatatttct tgcgggcgat caggccgaag cgctctgccg tggctcgatg
     1801 ctgatccacc aaggcaaccg gcgcaccacg cgcaccggca ggctggcttc cagggcagca
     1861 tagatgcgct ccggctcggc cagcgggaag gcgccgacca ggcgcagatc ggccacctgc
     1921 ggatcacagc ccaggtggcc gtgctggtag cgcgacagct cggcgatgaa ctggcccagc
     1981 ggcatgtcgt cggcctgcag aatgccgtgg gtccaggcct gctggccgtg gcgcagcggc
     2041 gccgggcgat ccacccactg ggcatcgaaa taggcctgct gccccgccac caggctctgc
     2101 cggcgcgcgc cgagaatctc cagcgcgccg acctggctcg agaccaggta gccgtcgtcc
     2161 tgctggcgca cggcgaaacg cccgccctgc acacgcaggc gcgcatgggc ggtttccagc
     2221 cacaacgggc gggcatcgtc ggccgcctcg accagcactt cgccacggta cagcgccagg
     2281 cgccgcagtt cggcggtgaa gtccacgtcc agcgcgctgt cggtgttcag ccacaggcgg
     2341 ctgccatcgg ccagctggct gccgagcacc tcgcccaccg ccgtgcgctg gttggcttgc
     2401 cactgctgcc agggcagcgc gcggc
//
LOCUS       DATIHC010000707         2259 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34593, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000707 DATIHC010000000
VERSION     DATIHC010000707.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2259)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2259)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2259
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34593"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1103
                     /locus_tag="VLF16_11705"
     CDS             <1..1103
                     /locus_tag="VLF16_11705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutB"
                     /protein_id="HSX71587.1"
                     /translation="DWLLGDHADEASLRALAPGLTPEMAAAVSKIMRVQDLILVAQKI
                     RVVTRFRNTMGLRGRMSTRLQPNHPTDDPSGIAASILDGLLYGNGDAMFGINPATDSL
                     GALTDLLKMLDAIIQRYEIPTQACVLTHVTSSIAAIERGAPVDLVFQSIAGTEAANAG
                     FGITLQVLQEGYEAGLSQKRGALGDNLMYFETGQGSALSANAHHGVDQQTCEVRAYAV
                     ARHYKPFLVNTVVGFIGPEYLYNGKQIIRAGLEDHFCGKLLGVPMGCDICYTNHAEAD
                     QDDMDTLLTLLGAAGINFIMGIPGSDDVMLNYQTTSFHDALYARQLLGLRPAPEFEAW
                     LERMNILHQQGGRLRLGDPVPPAFRNALAQLG"
     gene            1239..2060
                     /gene="eutC"
                     /locus_tag="VLF16_11710"
     CDS             1239..2060
                     /gene="eutC"
                     /locus_tag="VLF16_11710"
                     /EC_number="4.3.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015475563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008851 - ethanolamine ammonia-lyase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutC"
                     /protein_id="HSX71588.1"
                     /translation="MNDDQSPSGAIDNPWQALRRLTPARIALGRAGTSLPTGAQLDFQ
                     FAHAQARDAVHLPLDADELATGLAERGHQVLQLHSAAADRHTYLQRPDLGRRLDAASA
                     QALRDYPHAHPGGYDLAVVIADGLSALAVQRHSLAFLDRWQQQTSEDGWTLAPICLVR
                     QGRVAVADEVAELLGAKMVVILIGERPGLSSPDSLGLYFTYAPKVGLTDAFRNCISNV
                     RLEGLSYGLAAHKLLYLMREAGRRKLSGVSLKDEAEVPALDGEAPAAIGNFLIGD"
BASE COUNT          350 a          803 c          748 g          358 t
ORIGIN      
        1 gcgactggct gctgggcgat catgccgacg aggccagcct gcgcgccctg gcccccggcc
       61 tgacgccaga gatggcggcg gcggtgtcga agatcatgcg cgtgcaggac ctgatcctgg
      121 tggcgcagaa gattcgcgtg gtcacgcgtt ttcgcaacac catgggcctg cgcgggcgca
      181 tgtccacgcg cctgcagccc aaccacccga ccgacgatcc gtccggcatc gccgccagca
      241 ttctcgacgg cctgctgtac ggcaacggcg acgccatgtt cggcatcaac ccggctaccg
      301 acagcctggg cgcgctcacc gatctgctga agatgctcga cgcgatcatc cagcgctacg
      361 agatccccac ccaggcctgc gtgctgaccc acgtcaccag ctccatcgcc gccatcgagc
      421 gcggtgcgcc ggtcgacctg gtgttccagt ccatcgctgg caccgaggcg gccaacgccg
      481 gcttcggcat caccctgcaa gtgctgcaag agggctacga ggccgggctg tcgcagaagc
      541 gcggggcgct gggcgacaac ctgatgtact tcgagaccgg ccagggcagt gcgctgtcgg
      601 ccaacgccca ccatggcgtc gaccagcaga cctgcgaggt gcgcgcctac gcggtggcgc
      661 gccactacaa gccgttcctg gtgaataccg tggtcggctt catcggcccc gagtacctgt
      721 acaacggcaa gcagatcatc cgcgccggcc tggaagacca cttctgcggc aagctgctcg
      781 gcgtgccgat gggctgcgac atctgctaca ccaaccacgc cgaggccgac caggacgaca
      841 tggataccct gttgaccctg ctcggtgcgg ccggcatcaa cttcatcatg ggcatccccg
      901 gttccgacga cgtgatgctc aactaccaga ccacctcgtt ccatgacgcg ctgtacgccc
      961 gtcagctgct cggcctgcgc ccggcgccgg agttcgaggc gtggctggaa cgcatgaaca
     1021 tcctgcacca gcagggcggc cgcctgcgcc tcggcgaccc ggtaccgccg gccttccgca
     1081 atgccctggc gcagctgggg taggggcatg gccccctgtg tgctccaggt agggtgcgcc
     1141 atgcgcaccg gtggcgaggc ggtgcgcacg acgcacccta cggagtggcc gtgcaaggac
     1201 gggtgtcacc cgagcaggcg aggcacaagg agttgctgat gaacgatgac cagtcgccga
     1261 gcggcgccat cgacaatccc tggcaggcgc tacgccgcct gaccccggcg cgcatcgccc
     1321 tcggccgtgc cggcaccagc ctgcccaccg gcgcgcagct ggacttccag ttcgcccatg
     1381 cccaggcgcg cgacgccgtg cacctgccgc tggatgccga cgagctggcc acaggcctgg
     1441 ccgagcgcgg ccaccaggta ctgcagttgc acagcgcggc ggcggatcgg cacacctacc
     1501 tgcaacgccc cgacctgggg cggcgcctgg acgccgcctc ggcgcaggcg ctgcgtgatt
     1561 atccgcatgc ccatccgggt ggttatgacc tggccgtggt gattgccgac ggcctctcgg
     1621 ccctggccgt gcagcgccac agcctggcct tcctcgaccg ctggcaacag cagaccagcg
     1681 aggacggctg gaccctggcg ccgatctgcc tggtgcgtca ggggcgggtg gcggtggccg
     1741 acgaggtggc cgagctgctc ggcgcgaaga tggtggttat cctgatcggc gagcgtccgg
     1801 ggctgagctc gccggacagc ctcggccttt acttcaccta tgcgccgaag gtcggtttga
     1861 ccgacgcctt ccgcaactgc atttccaacg tgcgcctgga aggcctcagc tacggcctgg
     1921 ccgcgcacaa gctgctgtac ctgatgcgcg aggccgggcg acgcaagttg tcgggcgtga
     1981 gcctcaagga cgaggcggaa gtgcccgccc tggacggcga ggcacctgcc gccatcggca
     2041 atttcctgat cggcgattga gcgtcgccct gcccgcggtg ggtgtccagt cgccacgccg
     2101 catctggccc tgccatcgat gctcgcatcg cccctagagt ccgctatcgg aatctcgggg
     2161 tgtgcgtgga tgttcgggtt actcgccttc actgctggac tggtgcgcgg ctacagcggc
     2221 ttcggcttcg ccatgctcct ggccctcggc ctgatgacc
//
LOCUS       DATIHC010000708         1992 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13518, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000708 DATIHC010000000
VERSION     DATIHC010000708.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1992)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1992)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1992
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13518"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..700)
                     /locus_tag="VLF16_11715"
     CDS             complement(<1..700)
                     /locus_tag="VLF16_11715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HSX71589.1"
                     /translation="MLDAIHWDADLIRRHDRPGPRYTSYPTAVQFHSEIGSFDLLHAL
                     RDSRKALRPLSLYVHVPFCANICYYCACNKVITKDRGRALPYLERLEQEVELISRHLD
                     RGQVVEQLHFGGGTPTFLSHDELRRLMDHLRQHFNLLDDDSGDYGIEIDPREADWSTM
                     GLLRELGFNRVSLGVQDLDPDVQRAVNRLQTLEQTRAIVEAAHTLQFRSVNIDLIYGL
                     PLQTPESFARTVAEV"
     gene            complement(819..1502)
                     /locus_tag="VLF16_11720"
     CDS             complement(819..1502)
                     /locus_tag="VLF16_11720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HSX71590.1"
                     /translation="MPDLAPQLVSALILGLLGGGHCLGMCGGLMGALTLAIPPEQRAR
                     RLRLLLAYNLGRILSYATAGLLIGLAGWAVASSPAAMILRVVAGLLLIAMGLYLAGWW
                     SGLTRIEALGRHLWRHLQPLASRLMPVSSLPRALLLGAVWGWLPCGLVYSTLLWASSQ
                     GSPTDSALLMLAFGLGTWPVLLATGMAAERLTALLRKRGVRVAGGVLVILFGLWTLPG
                     PHQHWLMGH"
     gene            complement(1495..1704)
                     /gene="ccoS"
                     /locus_tag="VLF16_11725"
     CDS             complement(1495..1704)
                     /gene="ccoS"
                     /locus_tag="VLF16_11725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003243853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HSX71591.1"
                     /translation="MSAIYILIPIAVGLVGFAIWLFFWAVDNGQYDDLDSPAHSILFD
                     DEDPQHKAGIAEADKGDEPKDEPRA"
     gene            complement(1791..>1992)
                     /locus_tag="VLF16_11730"
     CDS             complement(1791..>1992)
                     /locus_tag="VLF16_11730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004422249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71592.1"
                     /translation="GSLVQAFALARRTRRIIVENLAWATLYNGLVLPFAAVGWVTPLW
                     AAVGMSASSLLVVLNALRLARV"
BASE COUNT          325 a          638 c          742 g          287 t
ORIGIN      
        1 tcacctcggc cacggtgcgg gcgaaactct cgggcgtctg cagcggcagg ccgtagatca
       61 ggtcgatgtt caccgagcgg aactgcaggg tatgcgccgc ctcgacgatg gcgcgggtct
      121 gttcgagggt ctgcaggcga ttgacggcgc gctgcacgtc cgggtcgagg tcctgcacgc
      181 cgaggctgac gcggttgaag cccagctcgc gcagcaagcc catggtcgac cagtcggcct
      241 cgcgcgggtc gatctcgatg ccgtagtcgc cgctgtcgtc gtccagcagg ttgaagtgct
      301 gccgcaggtg gtccatcagc cggcgcagct cgtcgtggct gaggaaggtc ggggtgccgc
      361 cgccgaagtg cagctgctcg accacctggc cgcggtccag atggcgcgag atcagctcga
      421 cctcctgttc cagccgttcc agatagggca gggcgcggcc gcggtccttg gtgatcacct
      481 tgttgcaggc gcagtagtag cagatgttcg cgcagaacgg cacgtgcacg tagagcgaca
      541 gcgggcgcag ggccttgcgg ctgtcgcgca gcgcatgcag caggtcgaag gagccgatct
      601 cgctgtggaa ctgcacggcg gtggggtagg aggtgtagcg cggacccggc cggtcgtggc
      661 ggcggatcag gtcggcgtcc cagtggatgg cgtcgagcat tggaggatcc ctggagtgac
      721 agtgaggcca gtctagggat tggtcgcgcg gcgactcttg atctgagtca ggctgttgcc
      781 tgttctgcgg gccgtggatg cgtcagcggc ctttaccgtc agtggcccat cagccaatgc
      841 tggtgcgggc cgggcagggt ccagaggccg aacaggatca ccagcacgcc gccagcgacg
      901 cgcacgccgc gtttgcgcag cagggcggtc aggcgttcgg cagccatgcc ggtggccagc
      961 agcaccggcc aggtgccgag gccgaaggcc agcatcagca gcgcgctgtc ggttggcgag
     1021 ccctggctgg aggcccacag caaggtgctg tagaccaggc cgcagggcag ccagccccag
     1081 actgcgccga gcagcagcgc gcgcggcagg ctgctgaccg gcatcaggcg gctcgcgagc
     1141 ggctgcagat ggcgccacag atgccgcccc agcgcctcga tgcgcgtcag gccgctccac
     1201 cagccggcca gatacaaccc catggcgatc agcaacaggc cggcgaccac ccgcaggatc
     1261 atcgccgccg ggctgctggc cacggcccag ccggccaggc cgatcagcag gccggccgtg
     1321 gcgtagctga gaatgcggcc gaggttgtag gccagcagca ggcgcaggcg acgggcgcgc
     1381 tgctccggtg ggatggccag ggtcagcgcg cccatcagcc cgccgcacat gcccaggcag
     1441 tggccgccgc cgagcaggcc gaggatcagc gccgagacca gctggggcgc gaggtcaggc
     1501 acgcggttcg tccttgggtt cgtcgccctt gtccgcctcg gcgataccgg ccttgtgctg
     1561 cgggtcctcg tcgtcgaaca ggatgctgtg ggccgggctg tccaggtcgt cgtactggcc
     1621 gttgtccacc gcccagaaga acagccagat ggcgaagccg accaggccga cggcgatcgg
     1681 aatcaggatg tagatggcgg acatacagcc tccgggggtg gagcagcgaa gtctgcgcgt
     1741 gaggcgctcg ctgctggaga ttcacgagtg gggcttgctg ctagcggatg tcagacccgg
     1801 gccagtcgca gcgcgttgag caccaccaat aacgaactgg ccgacatgcc gaccgcagcc
     1861 cacagcgggg tgacccagcc gacggcggcg aacggcagca cgaggccatt gtacagggtg
     1921 gcccaggcca ggttctcgac gatgatgcgg cgggtgcgcc gggccagggc gaaggcctgc
     1981 accaggctgc cc
//
LOCUS       DATIHC010000709         1823 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13521, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000709 DATIHC010000000
VERSION     DATIHC010000709.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1823
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13521"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..162
                     /locus_tag="VLF16_11735"
     CDS             <1..162
                     /locus_tag="VLF16_11735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid dehydrogenase"
                     /protein_id="HSX71593.1"
                     /translation="DVCYERTGGSAAELKAHIEGIETTLDEIFECATQEGATTTSIAD
                     RMARERLGR"
     gene            425..>1823
                     /locus_tag="VLF16_11740"
     CDS             425..>1823
                     /locus_tag="VLF16_11740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015276549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HSX71594.1"
                     /translation="MMSEQLHTGPLKRGLKNRHIQLIALGGAIGTGLFLGSAGVMQSA
                     GPSMILGYAIGGFIAFLIMRQLGEMIVEEPVAGSFSHFAHSYWGPFAGFLSGWNYWVL
                     YVLVGMAELTAVGKYVQYWWPEIPTWATALAFFVLINLINLVNVKAFGETEFWFAIIK
                     VVAIIGMILLGGYLLFSGAGGEQASVSNLWSHGGFFPNGVSGLVMMMAIIMFSFGGLE
                     LVGITAAEADQPKTVIPKAINQVVWRILIFYIGALTILLSLHPWDDLVKTLTSGGDAY
                     ASSPFVQIFSLIGEGTAAHVLNFVVLTAALSVYNSGVYCNSRMLYGLAEQGDAPRALM
                     KVNARGVPVLAIALSAAVTLLCVVVNYVVPQSALELLMSLVVAALVINWAMISLAHLK
                     FRKAMMAKGVQPSFKAFWFPFANYMCLAFVLFILGVMLMIPGIQVSVYAIPVWLAFIW
                     VCYRAKLAIGARSLAS"
BASE COUNT          267 a          612 c          598 g          346 t
ORIGIN      
        1 gacgtgtgct acgagcgcac cggcggcagc gcggccgagc tgaaggcgca tatcgaaggc
       61 atcgaaacca ccctggacga gatcttcgaa tgtgcgaccc aggaaggcgc gaccaccacc
      121 tccatcgccg accgcatggc ccgagagcgc ctgggccgct aagcgccgac cacaggccgg
      181 gctttgctcc ctctctcgtg tacgggagag ggccggggag agggtgcttt ttgctcgtct
      241 cccggcccgc cagttcccgc cccgcctgcc ggccgccggc ccggcgggtg tatactcccc
      301 gcgccccgga gcccacggcc cgcgggcctc gcccgccgga tcacgagtcc cggcggcata
      361 ttttccagac aggtgaaccc atgcctcgca cttgcctctc cctccgctcg atctggagcg
      421 ctcgctgatg tccgagcagt tgcacaccgg cccgctcaag cgcggcctga agaaccgcca
      481 tatccagctg atcgccctcg gcggtgccat cggcaccggc ctgttcctcg gctccgccgg
      541 ggtgatgcag agcgccggcc cgtcgatgat cctcggctat gccatcggcg gtttcatcgc
      601 cttcctgatc atgcgccagc tcggcgagat gatcgtcgag gagccggtcg ccggctcctt
      661 cagccacttc gcccatagct actggggccc gttcgccggc ttcctctccg gctggaacta
      721 ctgggtgctc tacgtgctgg tgggcatggc cgaactgacg gccgtgggca aatacgtgca
      781 gtactggtgg ccggagatcc cgacctgggc cacggcgctg gccttcttcg tgctgatcaa
      841 cctgatcaac ctggtcaacg tgaaggcctt cggcgagacc gagttctggt tcgccatcat
      901 caaggtggtg gcgatcatcg gcatgatcct gctcggcggc tacctgctgt tcagcggtgc
      961 gggcggcgag caggccagtg tcagcaacct ctggagccat ggcggcttct tccccaacgg
     1021 cgtgtccggc ctggtgatga tgatggccat catcatgttc agcttcggcg ggctggagct
     1081 ggtgggcatc accgccgccg aggccgacca gccgaagacg gtgatcccca aggcgatcaa
     1141 ccaggtggtc tggcggattc tgatcttcta catcggcgcg ctgaccatcc tgctgtcgct
     1201 gcacccctgg gacgatctgg tgaagaccct gacctcgggc ggcgatgctt acgccagcag
     1261 cccgttcgtg cagatcttct cgctgatcgg cgagggcacc gcggcccacg tgctcaactt
     1321 cgtggtgctg accgcggcgc tgtcggtcta caacagcggc gtgtactgca acagccgcat
     1381 gctctacggc ctggccgagc agggcgacgc gcccagggcg ctgatgaagg tcaacgcgcg
     1441 tggcgtgccg gtgctggcca tcgccctgtc ggcggcggtg acgctgctct gcgtggtggt
     1501 caactacgtg gtgccgcaga gcgcgctgga gctgctgatg tcgctggtgg tcgccgccct
     1561 ggtgatcaac tgggcgatga tcagcctggc gcacctgaag ttccgcaagg ccatgatggc
     1621 caagggtgtg cagccgagct tcaaggcctt ctggttcccc ttcgccaact acatgtgcct
     1681 ggcgttcgtg ctgttcatcc tcggggtgat gctgatgatc ccgggcattc aggtgtcggt
     1741 gtacgccatc ccggtgtggc tggcgttcat ctgggtctgc taccgcgcca agctggcgat
     1801 cggggcgagg tcgctggcca gcc
//
LOCUS       DATIHC010000710         2438 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11254, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000710 DATIHC010000000
VERSION     DATIHC010000710.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2438)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2438)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2438
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11254"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..835)
                     /locus_tag="VLF16_11745"
     CDS             complement(<1..835)
                     /locus_tag="VLF16_11745"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003123571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HSX71595.1"
                     /translation="MGKAMRMLARVSGVGLVLAALAADVLAASEIRSVRLWRAPDNTR
                     LVFDLSGPVQHSVFTLAAPNRIVIDVSGGQLSTKLDQLSLSNTPITGIRSAQRSPNDL
                     RLVLDLSAVVTPKSFSLAPNQQYGHRLVVDLFDQESAAPSTPQAPQVTQPAVGVTPPP
                     VVAVPGSAPAKLPIAPGAKRDIVIAIDAGHGGEDPGALGPGRKLYEKNVTLAIAKELQ
                     RQINAEKGFRGELVRTGDYFIPLRKRTEIARKKGADLFVSIHADAAPRAAAFGASVYA
                     LS"
     gene            complement(849..1265)
                     /gene="tsaE"
                     /locus_tag="VLF16_11750"
     CDS             complement(849..1265)
                     /gene="tsaE"
                     /locus_tag="VLF16_11750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HSX71596.1"
                     /translation="MYQLGARIAQATGGRGVIYLHGDLGAGKTTLSRGILRGLGHGGA
                     VKSPTFTLVEPYELGETRVFHFDLYRLADPEELEFLGIRDYFEGDALCLIEWPERGAG
                     VLPKADLDITISPQGVGRALQLQPHGARAEAWCAAL"
     gene            complement(1322..>2438)
                     /locus_tag="VLF16_11755"
     CDS             complement(1322..>2438)
                     /locus_tag="VLF16_11755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019582198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052855 - ADP-dependent NAD(P)H-hydrate
                     dehydratase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HSX71597.1"
                     /translation="ALLGTGFRGELRAPYAAAVEAINAAGLPVLAVDIPSGLCADTGR
                     VAESAVRADLTVSFIGLKLGLFTGDAPDWVGELAFDDLQADPALVAQQPHAALRLAGD
                     AVPLLAPRARTAHKGRFGHVLVIGGDRGFGGAALLSAESALRAGAGLVSLATRSEHLP
                     ASLARLPEVMCQPTESTYQLLGLCERADVLVVGPGLGQQAWGRSLLSAALASERPQVW
                     DADALNLLAEGVVQAPRDAVLTPHPGEAGRLLGLSTAEVQADRPAAALALARKYQAAV
                     VLKGAGSLVAAPDGRLLLCDLGHPAMATAGLGDVLAGLIGALRGQGLAAFEAAALGVW
                     LHAGAGQRLGELGRGLAASDLIPTIRQLLQEHAPCLR"
BASE COUNT          390 a          867 c          857 g          324 t
ORIGIN      
        1 cggacagggc gtagaccgag gcgccaaagg ccgccgcccg cggcgccgcg tcggcgtgga
       61 tggagacgaa caggtcggcg cccttcttgc gggcgatctc ggtgcgcttg cgcaggggga
      121 tgaaatagtc gccggtacgc accagctcgc cgcggaagcc cttctcggcg ttgatctgcc
      181 gctgcaactc cttggcgatg gccagggtga cgttcttttc gtacagcttg cggcccgggc
      241 cgagggcgcc ggggtcctca ccgccgtggc ccgcgtcgat ggcgatcacg atgtcgcgct
      301 tggcgcctgg cgcaatgggc agcttggccg gcgcactgcc cggcaccgcg accaccggcg
      361 gcggcgtgac gcccacggcc ggctgggtga cctgcggcgc ctggggcgtg ctcggcgcgg
      421 cggactcctg atcgaacagg tctaccacca ggcggtggcc gtactgctga ttaggcgcca
      481 ggctgaaact cttcggcgtg accacggcgg acagatcgag caccagacgc aggtcattgg
      541 gcgagcgctg ggccgagcgg ataccggtga tcggggtgtt gctgagcgac agctgatcca
      601 gtttcgtgga cagctggccg ccgctgacgt cgatgacgat gcggtttggc gcggccaggg
      661 tgaacacact gtgctgtacc gggccggaca ggtcgaagac cagtcgggtg ttgtcggggg
      721 cgcgccacag gcgaacactg cggatttcac tcgcggcgag gacgtccgcg gccagcgccg
      781 ccagcaccag cccaacacca ctcacccgcg ccagcatgcg catagccttc cccatctttc
      841 ttgaactctt ataaggcagc acaccacgcc tcggctcgcg cgccatgtgg ctgcaactgc
      901 agcgcgcggc cgactccttg cgggctaatg gtaatgtcca ggtcggcctt tggcaaaacg
      961 ccggccccgc gctcgggcca ctcgatcagg cacagggcat cgccttcgaa gtagtcgcga
     1021 atgccgagaa actccagctc ttccgggtcg gccagacgat acagatcgaa gtggaagacc
     1081 cgcgtttcgc ccagctcgta gggctcgacc agcgtgaagg tcgggctctt caccgcaccg
     1141 ccatgcccca ggccacgcag gatgccgcgc gacagagtgg tcttgccggc acccagatca
     1201 ccgtgcaggt agatcactcc gcgaccgccg gtcgcctggg cgatgcgcgc gcccagttgg
     1261 tacatggcgt cttcgccctc ggcatagagg gtcactgctg gcggggtcgc cttcgacggg
     1321 gtcacctcag acacggcgca tgctcctgca acagctgacg aatggtcgga atcagatcgc
     1381 tggccgccag gccgcggccg agctcgccga ggcgctggcc ggcgcccgcg tgcagccaga
     1441 cgcccagcgc ggcggcctcg aaggccgcca gcccctgccc acgcagcgcg ccgatcagcc
     1501 cggcgaggac atcgcccagg ccagcggtcg ccatggccgg gtggccgaga tcgcacaaca
     1561 gcagccggcc atcgggcgcg gcgaccaggc tgccggcgcc cttgagcacg actgccgcct
     1621 ggtacttgcg cgccagcgcc agggcagccg cagggcggtc ggcctgcacc tcggcagtgg
     1681 acagtcccaa cagacgaccg gcctcgcccg gatgcggcgt gagcaccgca tcacgcggcg
     1741 cctgcaccac gccttcggcc agcagattga gggcatcggc atcccagacc tgcggccgct
     1801 cgctggccag cgcggcgctg agcaggctgc gcccccaggc ttgctggccg agacccggac
     1861 cgaccaccaa cacatcggcg cgctcgcaca ggccgagcag ctgataggtg gactcggtgg
     1921 gctggcacat gacctccggc aggcgcgcca ggctggcggg cagatgctcg ctgcgggtcg
     1981 ccagggacac caggccggcg ccggcgcgca gcgcgctttc cgcgctgagc aaggcggcgc
     2041 cgccgaagcc acggtcgccg ccgatcacca gcacgtgacc gaagcggccc ttgtgcgccg
     2101 tgcgggcgcg cggcgccagc agcggcacgg cgtcgcccgc caggcgcagc gcggcatgcg
     2161 gctgctgggc gaccagcgcg ggatcggcct gcaggtcatc gaacgccagc tcgccgaccc
     2221 agtccggtgc gtcgccggtg aacagcccca gcttgaggcc gatgaaactg acggtgagat
     2281 cggcgcgcac cgccgactcc gcgacccggc cggtgtcggc gcacaagccc gaaggaatgt
     2341 ccacggccaa caccggcagg cccgcggcat tgatcgcctc gacggcggcg gcataaggcg
     2401 cacgcagctc gccacgaaag ccggtgccga gcagggcg
//
LOCUS       DATIHC010000711         2134 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30003, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000711 DATIHC010000000
VERSION     DATIHC010000711.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2134)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2134)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2134
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30003"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..521)
                     /locus_tag="VLF16_11760"
     CDS             complement(<1..521)
                     /locus_tag="VLF16_11760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004422520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HSX71598.1"
                     /translation="MLLLPFGTLESTTFARAARALAVVFFVSLAGCQSMDTGNDDGVD
                     TDRAVTLEQEPEWLSDTVQVEAPKDIWERMRDGFALQEQIGVNPRIENQRLWFVSNPS
                     FLESASTRGSLYIHYVVERLEERDMPMELALLPVIESAYNPYAYSRSHAVGIWQFIPS
                     TGRYFNLRQTNWY"
     gene            complement(613..1395)
                     /gene="gloB"
                     /locus_tag="VLF16_11765"
     CDS             complement(613..1395)
                     /gene="gloB"
                     /locus_tag="VLF16_11765"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004416 - hydroxyacylglutathione hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0019243 - methylglyoxal catabolic process
                     to D-lactate via S-lactoyl-glutathione [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HSX71599.1"
                     /translation="MIQIDALPAFSDNYIWLLQDTGARRCAVVDPGDATPVLNWLAAH
                     PDWLLTDILVTHHHPDHVGGVAKLKAATGARVSGPAHENIPARDLALDEGDSVEVLGR
                     SFLIYAVPGHTLGHIAYYQKDEGWLFCGDTLFAAGCGRLFEGTPAQMHESLGRLAALP
                     DATAVYCTHEYTLSNLHFARAVEPDNPAIAARFAEVEAWRAAGRISLPSSLGLEKATN
                     PFLRCNETSVKQLLDQRNGRQQRTQAQVFACLRDWKDHFKAS"
     gene            1469..1609
                     /locus_tag="VLF16_11770"
                     /pseudo
     CDS             1469..1609
                     /locus_tag="VLF16_11770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003376236.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
     gene            complement(1963..2082)
                     /locus_tag="VLF16_11775"
                     /pseudo
     CDS             complement(1963..2082)
                     /locus_tag="VLF16_11775"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
BASE COUNT          353 a          671 c          761 g          349 t
ORIGIN      
        1 tcgtaccagt tggtctggcg cagattgaag tagcggccgg tggaagggat gaactgccag
       61 atgccgacgg catggctgcg cgagtaagcg taggggttgt aggcgctctc gatcaccggc
      121 agcagcgcca gctccatcgg catgtcgcgc tcttccaggc gctccaccac gtagtggata
      181 tagaggctgc cgcgggtgct ggcgctttcc aggaaggaag gattgctgac gaaccacagg
      241 cgctgattct cgatacgagg attgacgccg atctgctcct gcagcgcgaa gccgtcacgc
      301 atgcgctccc agatgtcctt gggcgcctcc acctgcaccg tatcgctgag ccattccggc
      361 tcctgctcca gcgtcaccgc gcggtcggtg tcgacgccgt cgtcgttgcc cgtgtccatg
      421 ctctgacagc cggccagaga cacgaaaaac actaccgcca gagccctcgc tgcccgcgca
      481 aacgtcgtcg attcaagggt tccgaaaggt aataaaagca ttggtttcta gtatctgccg
      541 gcgaaaaaat tccggggatt ctagaaacgg cccctggggt ggtcaagttt tcaccagggc
      601 tcgagagggg ttctagctcg ccttgaagtg gtccttccag tcgcgcagac aggcgaaaac
      661 ctgggcttgc gtccgctgct gtctgccgtt ccgctggtcg agtaattgtt taacggatgt
      721 ttcgttgcag cgcaggaacg ggttggtcgc cttctccaag ccgagactcg acggcaggct
      781 gatgcgcccg gcggcgcgcc aggcctcgac ctcggcgaag cgcgcggcga tggccgggtt
      841 gtcgggctca accgcgcggg cgaagtgcag gttgctcagg gtgtactcgt gggtgcagta
      901 gacggcagtg gcgtcgggca gggccgccaa tcggcccagg gattcgtgca tctgcgcagg
      961 cgtgccctcg aacaggcgcc cgcagccggc ggcgaacagg gtgtcgccgc agaacagcca
     1021 gccttcgtct ttctggtagt aggcgatatg gcccagggtg tgaccgggca ccgcatagat
     1081 aaggaagctg cggccgagca cttctacgct gtcgccctcg tccagggcca ggtcgcgggc
     1141 cgggatgttc tcgtgcgccg ggccgctgac gcgggcgccg gtcgcggctt tcagtttggc
     1201 tacaccgccg acgtggtctg gatggtggtg ggtgacgagg atgtcggtga gcagccagtc
     1261 cgggtgcgct gccagccagt tcagcaccgg cgtggcgtcg cccgggtcga ccacggcgca
     1321 gcggcgggcg ccggtatcct gcagcagcca gatgtagttg tcgctgaacg cgggaagggc
     1381 atcgatctga atcatgttcg gggtcgccat tcgggaagca atggcgcatc ttaagcgcca
     1441 tagtcgagct tgtgtcatgg aggttccgat gagcgagcaa cccttcgccc aggccgatgc
     1501 cgagtggctg gagctgaccc gcgccgcccg cgagtggttg gcctcgccgt tgggcgagct
     1561 gctgctggcc gaggagagca aggcgctgga cgaggagctg gcgcgctggg gcggacgtaa
     1621 cgggcgcaac cccaccacca gcttgcgtgc caccagcagg tagaaaccgg cgccgggcgc
     1681 gtggatacgc gcgccccagt gctccagccc tgccaggcgg gcctgccagg ccggcgcgga
     1741 aagcggcgga cgatagcacc cgaagcggcg tttctccagc gcgaatccga gcaggccgag
     1801 ccagtccgcc aggcggctgg gcgcgaagca gcgggcctgg gccaggccat cgcgggcgaa
     1861 gcgatggcgc agcccccagg cgctccaggg gttgatcccg gtgaccagca gatagccgcc
     1921 ggggcgcacg ctgcgcgccg cctcgcgcag caggccgtgg ggcgacaggc agaagtccag
     1981 cccgtgctgc agcaccacca cgtcggcggc atgctcgccc agcggccagg cctgttcctc
     2041 gcaggcgatg tgcacgccgg gcagcggcgc gcccaggcgc acgttgcagc gaatctgcgg
     2101 ggccttgggc ggctcggcca gcgccggacc gtag
//
LOCUS       DATIHC010000712         1952 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_36979, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000712 DATIHC010000000
VERSION     DATIHC010000712.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1952
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36979"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..532)
                     /locus_tag="VLF16_11780"
     CDS             complement(<1..532)
                     /locus_tag="VLF16_11780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTRA domain-containing protein"
                     /protein_id="HSX71600.1"
                     /translation="MREEAPRTVTAICRALLEQIDHGLLPRGGKLPAERRLSELFETT
                     RITLREALGQLEAEGLIYREERRGWFVSPRRLAYNPLVRSHFHAMVREQGRVPSTEVL
                     SARLMPAPVDICGRLELPALSAVLQIRRARRIDGRLVLYVEHYLNPVYFPGILDCDLT
                     ASLTELYASRYDIRYGR"
     gene            824..1879
                     /locus_tag="VLF16_11785"
     CDS             824..1879
                     /locus_tag="VLF16_11785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSX71601.1"
                     /translation="MKRLLLASLLGSAIVLGNHAMANEDLKALEQAARAEGEVNSVGM
                     PDSWANWKDTWADLNKLYGLKHMDTDMSSAQEIAKFDAEKDNATADIGDVGAAFGPIA
                     VQKGVTQPYKPSTWEQIPAWAKDQDGHWMLAYTGSIAFIVNKQLVKETPKSWADLKQG
                     DYKVAIGDVSAAAQAVNGVLAAAIANGGNETNIQPGLDFFAEIAKQGRLSLSNPTIQT
                     LEKGEVEVGVVWDFNGLSYRDQIDPSRFEVLIPSDGSVISGYTTIINKYAKHPNAAKL
                     TREYILSDAGQINLAKGNARPIRAEHLTLPADVQAKLLPNEQYAKVQPIKDPDAWEET
                     SKALPQLWQENVIIEMQ"
BASE COUNT          407 a          667 c          592 g          286 t
ORIGIN      
        1 cccggccgta gcggatgtcg tagcgactgg catacagctc ggtcagcgac gcggtcaggt
       61 cgcagtcgag gatgccggga aaatagaccg gattgagata gtgctcgacg tagagcacca
      121 gacggccgtc gatgcgccgc gcccgacgga tctgcaacac cgccgacagc gccggcagct
      181 cgaggcgacc gcagatgtcc accggcgccg gcatcagacg cgcgctgagc acctcggtcg
      241 acggcaccct gccctgctcg cgcaccatgg cgtggaagtg gctgcgcacc agcgggttgt
      301 aagccaggcg gcgcggcgag acgaaccagc cgcggcgctc ctcgcggtag atcagcccct
      361 cggcctcgag ctgacccaag gcctcgcgca gggtgatgcg ggtggtctcg aacagctcgc
      421 tcaggcgacg ctcggcaggc aacttgccgc cgcggggcag caggccgtgg tcgatctgct
      481 ccagcaaggc gcggcagatg gcggtaacgg tgcggggcgc ttcttcgcgc atgcatttct
      541 ccaatctggc atagaccagc accattcgag tgcaggcgcc ggccatgcta ggcagcctag
      601 atgactgtcg gatgacagcc cgccgcgctc gccgatgcct tgcacaccgc atgccacctg
      661 cctttgcgcc tcgccaaaga aatcagccac ttagccatgg tctacgcttt ccaacgctgc
      721 ccggctgcgc tggcagcgcc ataaaagcgt catagaaagc ctctagattt ggcctgggtc
      781 ttgctgatct agaccacact ttcaccctga caaggagctc cacatgaaac gcctgctgct
      841 ggcttcactg ctgggatcgg ccatcgttct gggcaaccac gccatggcca acgaggactt
      901 gaaagcactg gaacaagccg cccgcgccga gggcgaagtc aacagcgtcg gcatgcccga
      961 cagctgggcc aactggaaag atacctgggc cgacctgaac aagctgtacg gcctcaaaca
     1021 catggacacc gacatgagct ccgcccagga gatcgccaag ttcgatgccg agaaggacaa
     1081 tgccaccgcc gacatcggcg acgtcggcgc cgccttcggc cccatcgccg tgcagaaggg
     1141 cgtgacccag ccctacaagc cgagcacctg ggagcagatc cccgcctggg ccaaggatca
     1201 ggacggccac tggatgctgg cctacaccgg ctccatcgcc ttcatcgtca acaagcagct
     1261 ggtcaaggaa acgcccaagt cctgggccga cctgaagcag ggcgactaca aagtcgccat
     1321 cggcgacgtc agcgccgccg cccaggcggt caacggcgtg ctggccgccg ccatcgccaa
     1381 tggcggtaac gagaccaaca tccagccggg cctggacttc ttcgccgaga tcgccaagca
     1441 gggccgcctg tcgctctcca acccgaccat ccagaccctg gaaaagggcg aagtggaagt
     1501 cggcgtggtg tgggacttca acggtctgtc ctaccgcgac cagatcgacc cgagccgctt
     1561 cgaggtgctg atcccgtccg acggttcggt gatctccggc tacaccacca tcatcaacaa
     1621 gtacgccaag caccccaacg ccgccaagct gacccgcgag tacatcctct ccgacgccgg
     1681 ccagatcaac ctggccaagg gcaacgcccg gccgatccgc gccgaacacc tgaccctgcc
     1741 ggcggacgtg caggccaaac tgctgcccaa cgagcaatac gccaaggtac aacccatcaa
     1801 ggaccccgac gcctgggaag aaacctccaa ggcgctgccg cagctgtggc aggaaaacgt
     1861 gatcatcgaa atgcagtgat gccgatacgg cgctgtgctt ttactccctc tcccgtttac
     1921 gggagagggc tggggagagg gtggcaaggc tg
//
LOCUS       DATIHC010000713         1661 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_6748, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000713 DATIHC010000000
VERSION     DATIHC010000713.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1661
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6748"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1113)
                     /locus_tag="VLF16_11790"
     CDS             complement(<1..1113)
                     /locus_tag="VLF16_11790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013790368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HSX71602.1"
                     /translation="MQLLPALALVFGWAPLHVLCLSIVILLCTLPLALACLQNINTTL
                     DSLADDTRRMRELDFDGPAAEGSVFYEVDCLSRNHNSMKDALQRQTHALQESQSKLSS
                     LVENGLLLSSERDREALFRHILMEGKRICNAEAATMYLKTSHGTLRFALRSMDDPLPA
                     DEIPLHDPVTGAPNEAHVSTYAALHNRTVVIDDVYAETRFDLSGTRHFGAQSGYRTVS
                     MITVPLAARHDEVIGVLQFMNALDPHSGEVVAFSEQALSFIEALASQAAVALENQNLI
                     EAQNALIDAMIEILAGAIDAKSPYTGAHCERVPALALMLAEEACEVSEGPLADFRFNT
                     PDEWREFRIGAWLHDCGKITTPEHVVDKATKLETIYN"
     gene            1312..>1661
                     /locus_tag="VLF16_11795"
     CDS             1312..>1661
                     /locus_tag="VLF16_11795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013790369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71603.1"
                     /translation="MFVLKRIGFCLLVSLLMPSALLAAEQKPIIGYVMKVQGEAFVQA
                     NGQLQPAVVGTPLHRGSLLKTGPTGSMGVTLEDSTVMSVGPESELTIDAYAFEPSQNA
                     LQLSARITRGTLNY"
BASE COUNT          318 a          504 c          521 g          318 t
ORIGIN      
        1 gttgtagatg gtttccagct tggtggcctt gtcgaccacg tgctccgggg tggtgatctt
       61 gccgcaatcg tgcagccagg caccgatgcg gaattcgcgc cactcgtccg gcgtgttgaa
      121 gcggaaatcc gccagcggcc cctcgctgac ctcgcaggcc tcctcggcca gcatcagcgc
      181 gagcgccggc acgcgttcgc aatgggcgcc ggtgtaaggg ctcttggcat cgatggcgcc
      241 ggcgagaatc tcgatcatcg cgtcgatcag cgcattctgc gcctcgatca ggttctggtt
      301 ttccagggcc accgccgcct gggaggccag ggcctcgatg aacgacaacg cctgctcgga
      361 aaaggccacc acctcgccgc tgtgcgggtc cagggcgttc atgaactgca ggacaccgat
      421 cacctcgtcg tgacgcgcgg ccagcggcac ggtgatcatc gacacggtgc ggtagccgga
      481 ctgggcgccg aagtggcgcg tgccactcag gtcgaaacgg gtctcggcgt acacatcgtc
      541 gatcaccacg gtccggttat gcagcgcggc ataggtggag acgtgagcct cgttgggcgc
      601 gccggtgacc gggtcatgca acggaatttc gtcggccggc aacgggtcgt ccatcgagcg
      661 cagggcgaag cgcaaggtgc catgactggt cttcaggtac atggtcgcgg cttcggcgtt
      721 gcagatgcgc ttgccctcca tgaggatgtg gcggaacagc gcctcgcgat cccgctcgga
      781 cgacagcagc aggccgtttt ccaccaggct cgacagcttc gattgcgact cctgcagcgc
      841 gtgggtctgg cgctgcaacg catccttcat gctgttgtgg ttacggctca ggcagtcgac
      901 ttcgtaaaac accgacccct ctgccgcagg cccgtcgaaa tccagttcgc gcatgcgccg
      961 ggtatcgtcg gccaggctgt cgagggtggt gttgatgttc tgcaggcagg ccaacgccag
     1021 cggcaaggtg cacagcagaa tcacgatgct gaggcacagg acatgcagcg gcgcccagcc
     1081 gaataccagg gccagtgcgg gcagcagttg catcacgaaa aaggtggcga ggacgatcgt
     1141 ccaattcttc aagcgcagct tgaaaggtcc cgaggtcata cagcggcctg ccttgaatgc
     1201 cttttttgat cgaaatagtg gcaaatcatg acgcttggat cttgtattac tatgtcgtgc
     1261 aaattttgac gtcaattcgc ctacggaatc gatgccagca gggagagtac tatgtttgtc
     1321 ctcaaaagaa tcggcttctg ccttctcgtc agcctgttga tgccctccgc tctcctggct
     1381 gcagagcaaa aaccgatcat cggctacgtg atgaaagtgc aaggtgaagc cttcgtccag
     1441 gcaaatggcc agcttcagcc cgccgtcgtc ggcaccccgc tgcaccgtgg gagcctgctg
     1501 aaaaccggac caacgggctc catgggtgtg accctggaag acagcacggt gatgtccgtc
     1561 gggccggaaa gcgaattgac catcgacgcc tacgccttcg agcccagcca gaatgcgttg
     1621 cagctgagtg cgcggatcac ccgcggcacg ctcaactaca t
//
LOCUS       DATIHC010000714         1837 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43958, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000714 DATIHC010000000
VERSION     DATIHC010000714.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43958"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(109..855)
                     /locus_tag="VLF16_11800"
     CDS             complement(109..855)
                     /locus_tag="VLF16_11800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018929528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FadR/GntR family transcriptional regulator"
                     /protein_id="HSX71604.1"
                     /translation="METPSTAPRARRKHRSLAQELVSELSQQISDGVFKRGEKLPTES
                     AIMAAQGVSRTVVREAISRLQAAGLVETRHGIGTFVLDMPSPSGLRIDPATIVTLREV
                     IALLELRISLEVESAGLAATRRTPEQLAAMRAALDSFLSAAHRSDAVASDFQFHLQIA
                     IATDNRYFTDIMTHLGTSIIPRTRLNSARLAHDDEKHYLSRLSREHEEIYEAIARQDA
                     EAARAAMRLHLTNSRERLRQAHEEAEHQHD"
     gene            915..1799
                     /locus_tag="VLF16_11805"
     CDS             915..1799
                     /locus_tag="VLF16_11805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004419946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase"
                     /protein_id="HSX71605.1"
                     /translation="MTPEASMPILQDALTRLELRPELGGAIANWTLRDGGAPLLRHAG
                     EQALAAGTPRRLGCFALVPWSNRITEGGFANPSAWLALTPPPGEALPIHGSAWHQAWT
                     LLAHDPSSALLVLDSAEPFPYRAEQRLSLRDGCLSLSLQVEHRGAEAAWYGLGLHPYF
                     PRTAATRLEIGAEAVWLCGDDRLPNELAPLPPAWDFARERTLPDSEVDNAFAGWNGRC
                     RIVQPDLGYVLDCQASHCGHYMLFCPSGRDFFCVEPVSHPPNAHHLPGRPGLRLLKPG
                     QRLRLDWHMTCRPLTTRP"
BASE COUNT          229 a          653 c          654 g          301 t
ORIGIN      
        1 ctgttcgcct ggctgatcct cggtcaggcg ctgggcagcc tgcagctgct cggcggcgcc
       61 atcgtgctcg gcggcatcgt gctgctggca ctgcggcgcg gctgaggctc agtcgtgctg
      121 gtgctccgcc tcttcgtggg cctgacgcag ccgctcgcgg ctgttggtca ggtgcaggcg
      181 catggccgca cgcgcggctt cggcgtcctg gcgggcgatg gcctcgtaga tttcctcgtg
      241 ctcgcggctc aggcgcgaca ggtagtgctt ctcgtcgtca tgggccaggc gcgccgagtt
      301 cagccgcgtg cgcggaatga tgctggtgcc caggtgggtc atgatgtcgg tgaagtagcg
      361 gttgtcggtg gcgatggcga tctgcaggtg gaactggaag tccgaggcca ccgcgtcgct
      421 gcggtgcgcg gcgctgagga aactgtccag cgccgcgcgc atcgccgcca gctgctcggg
      481 cgtgcggcgc gtggctgcca gcccggcgga ctcgacctcc aggctgatgc gcagctcgag
      541 cagggcgatg acctcacgca gggtgacgat ggtcgccggg tcgatgcgca ggccgctcgg
      601 gctgggcatg tccagcacga aggtgccgat gccgtggcgg gtctccacca ggccggccgc
      661 ctgcaggcgc gagatggcct cgcgcaccac ggtgcggctg acgccctggg ccgccatgat
      721 cgccgactcg gtgggcagct tctcgccacg cttgaacaca ccgtcgctga tctgctggga
      781 cagctcgctg accagttcct gggccaggct gcggtgcttg cggcgcgcgc gcggcgcggt
      841 gctcggggtt tccatgacgt gggtgcggtc tctgctgtcg gcgaccgcgc catcatatcg
      901 caggcagttg tacgatgaca cccgaggctt ccatgccgat tctgcaggac gcgctgaccc
      961 gcctggaact gcggccggaa ctgggcggcg ccatcgccaa ctggacgctg cgtgacggcg
     1021 gagcgccgct gctgcgccat gccggcgaac aggcgctggc cgcgggcact ccgcgccgac
     1081 tgggctgctt cgccctggtg ccctggtcca accgcatcac cgaaggcggc ttcgccaatc
     1141 cttccgcctg gctggccctg acgccgccgc ccggcgaggc cctgccgatc cacggcagcg
     1201 cctggcacca ggcctggacc ctgctggccc atgacccgag ttcggcgctg ctggttctcg
     1261 acagcgccga gcccttcccc taccgcgcgg agcagcgact gagcctgcgc gacggctgcc
     1321 tgagcctgag cctgcaggtg gagcaccgcg gcgccgaggc ggcctggtac gggctgggcc
     1381 tgcatccata ttttccccgc accgccgcca cccgcctcga gatcggcgcc gaggccgtat
     1441 ggctgtgcgg cgacgatcgc ctgccgaacg agctggcgcc actgccgccg gcctgggatt
     1501 tcgcccgcga acgcactttg ccggacagcg aggtggacaa cgccttcgcc ggctggaacg
     1561 gccgctgccg catcgtccag ccggacctgg gctacgtcct ggactgccag gcctcgcact
     1621 gtggccacta catgctgttc tgcccgagcg ggcgcgactt cttctgcgtc gagccggtgt
     1681 cgcacccgcc caacgcccac cacctgccgg gccggccggg gctgcgtctg ctcaaacccg
     1741 gccagcgcct gcggctggac tggcacatga cctgccggcc gctgaccaca cgcccatgaa
     1801 aaaggccgcc catgggcggc cttttcggtg acgcggg
//
LOCUS       DATIHC010000715         1777 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11267, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000715 DATIHC010000000
VERSION     DATIHC010000715.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1777
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11267"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..773
                     /locus_tag="VLF16_11810"
     CDS             <1..773
                     /locus_tag="VLF16_11810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AarF/UbiB family protein"
                     /protein_id="HSX71606.1"
                     /translation="FTQVFRDSFFHADMHPGNIFVATRTPWSPQYIAIDCGIVGSLTP
                     EDQDYLARNLIAFFKRDYRRVAQLHIDSGWVPAETKVNEFEAAIRTVCEPIFEKPLKD
                     ISFGQLLLRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWTTAQPFLER
                     WMRERVSPRNLLHNLQTQVEQVPHFANMTRDLLERMSQPHASDPPPPWQERRDRWPLR
                     LLGAALVAAGVSQELSLAPAAWTAWLSLGAGLALILRR"
     gene            878..1276
                     /gene="hisI"
                     /locus_tag="VLF16_11815"
     CDS             878..1276
                     /gene="hisI"
                     /locus_tag="VLF16_11815"
                     /EC_number="3.5.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HSX71607.1"
                     /translation="MTDWLDEIHWNEDGLIPAIAQDHKTGRVLMMAWMNRESLALTAA
                     EQRAIYWSRSRGKLWRKGEESGHVQKLHELRLDCDADVIILLVEQLGGIACHTGRESC
                     FYRVFENGAWQTVDPVLKDPHAIYQGHKHE"
     gene            1269..1601
                     /locus_tag="VLF16_11820"
     CDS             1269..1601
                     /locus_tag="VLF16_11820"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011911574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-ATP diphosphatase"
                     /protein_id="HSX71608.1"
                     /translation="MSDTLTRLAEVLESRKGAAPDSSYVASLYHKGLNKILEKVGEES
                     VETILAAKDAAASGDCNDLIYETADLWFHSLVMLAALGQHPQAVLDELDRRFGLSGHA
                     EKAARPTS"
     gene            1624..>1777
                     /locus_tag="VLF16_11825"
     CDS             1624..>1777
                     /locus_tag="VLF16_11825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HSX71609.1"
                     /translation="MGIFDWKHWLVILIVVVLVFGTKRLKNLGSDLGETIKGFRKAMN
                     TDDDKPD"
BASE COUNT          329 a          631 c          545 g          272 t
ORIGIN      
        1 tctttaccca ggtgttccgc gacagcttct tccacgccga catgcacccc ggcaacatct
       61 tcgtcgccac ccgcacgccc tggagcccgc agtacatcgc catcgactgc ggcatcgtcg
      121 gcagcctcac ccccgaggac caggactacc tggcgcgcaa cctgatcgcc ttcttcaagc
      181 gcgactaccg ccgcgtggcg cagctgcaca tcgattccgg ctgggtgccg gcggaaacca
      241 aggtcaacga attcgaggcg gccatccgca ccgtatgcga gccgatcttc gagaagccgc
      301 tgaaagacat ctccttcggc cagctgctgc tgcgcctgtt ccagaccgcg cggcgcttca
      361 acatggaagt gcagccgcag ctggtgctgc tgcagaagac cctgctcaac atcgagggac
      421 tcggccgcca gctgtacccg gacctggacc tgtggaccac cgcccagccc ttcctcgagc
      481 gctggatgcg tgaaagggtc agcccgcgca acctgctgca caatctgcag acccaggtcg
      541 agcaggtgcc gcacttcgcc aacatgaccc gcgacctgct cgagcgcatg agccagcccc
      601 acgccagcga cccgcctccc ccctggcagg agcgccgcga ccgctggccg ctgcgcctgc
      661 taggtgcggc cctggtggcg gcgggcgtca gccaggaatt gtcactggca ccggcggcct
      721 ggaccgcctg gctcagcctg ggcgccggcc tggcgttgat cctgcgccga tagccagtgc
      781 cgcccacggc tggcacactt gacctttccg cacccgccgg gtgcaccacc ggcgcgaagc
      841 ccgcgccatg agagcgcccg aaacgggcgg atgcgaaatg accgactggc tcgacgagat
      901 tcactggaac gaggacggcc tgatcccggc catcgcccag gaccacaaga ccgggcgtgt
      961 gctgatgatg gcctggatga accgcgagtc cctggccctc accgccgccg aacagcgtgc
     1021 catctactgg tcacgttcgc gcggcaagct gtggcgcaag ggcgaggaat ccggccacgt
     1081 gcagaagctc cacgagctgc gcctggactg cgacgccgac gtgatcatcc tgctggtcga
     1141 acagctcggc ggcatcgcct gccacaccgg ccgcgagagc tgcttctatc gcgtcttcga
     1201 aaacggtgcc tggcagaccg tcgacccggt cctgaaggac ccgcacgcca tctaccaggg
     1261 acacaagcat gagtgacacc ctcacccgcc tggccgaagt gctggagtcg cgcaagggcg
     1321 cggcgccgga cagctcctac gtggccagcc tgtatcacaa gggtttgaac aagatcctgg
     1381 agaaggtcgg cgaagagtcg gtcgagacca tcctcgccgc caaggacgca gccgccagcg
     1441 gcgactgcaa cgacctgatc tacgagaccg cggacctctg gttccacagc ctggtcatgc
     1501 tcgccgccct cggccagcac ccgcaggccg tgctggacga gctggaccgg cgcttcggtc
     1561 tgtccgggca cgccgaaaag gcggcgcgcc ccacttcctg aattcactgc gaggattgat
     1621 tgcatgggca ttttcgactg gaaacactgg ctggtcattc tgatcgtggt ggtgctggtg
     1681 ttcggcacca agcgcctgaa gaacttgggt tccgacctcg gcgaaaccat caagggcttc
     1741 cgcaaggcga tgaacaccga cgacgacaag ccggacg
//
LOCUS       DATIHC010000716         2050 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21911, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000716 DATIHC010000000
VERSION     DATIHC010000716.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2050)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2050)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2050
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21911"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..337)
                     /locus_tag="VLF16_11830"
     CDS             complement(<1..337)
                     /locus_tag="VLF16_11830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008002668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hybrid sensor histidine kinase/response
                     regulator"
                     /protein_id="HSX71610.1"
                     /translation="MGYASNAKNKDSATPPMDISLTHRLSYKQARLTVLVAFLLGTLL
                     SLIQVGLDYASEDASIDREIHSLLEISHNPAARISYNIDAELAQELVLGLLRSPAVMR
                     AEIIDNSGLV"
     gene            379..1269
                     /locus_tag="VLF16_11835"
     CDS             379..1269
                     /locus_tag="VLF16_11835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSX71611.1"
                     /translation="MDVRLNSFLQRAESVLERIEPLLPAERVALDWSAVIAARWQREG
                     RAGYLQPLRVSLDLGLSDLVGVDTQREQLARNTRQFVAGLPANHALLWGARGTGKSSL
                     VRALLAEHAGAGLRLIEIERDHLADLPRVVEALIGLPQRFVLFCDDLSFESGEGDYRV
                     LKSVLDGSLERAPDNVVLYATSNRRHLVPEKESDNLDSRMVDGELHPSEAIEDKIALS
                     DRFGLWISFYPFTQDHFLAVVRHWVTVLAADAGLQWSWDHDLEVLAIRWALGRGNRNG
                     RCAYQFARSWVGQRLLEVRS"
     gene            1266..1748
                     /locus_tag="VLF16_11840"
     CDS             1266..1748
                     /locus_tag="VLF16_11840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0033745 - L-methionine-(R)-S-oxide
                     reductase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HSX71612.1"
                     /translation="MIDLQQAGQGREGYELLAAQLEALLADERDFVANAAQFSAFLFH
                     ELADLNWAGFYLNKGEQLVLGPFQGKVACVRIPFGRGVCGAAASSLQTQRVEDVHAFA
                     GHIACDSASNSELVVPLVKDGRLIGVLDLDSPLTARFSEEDQLGIERLAAIFLRLTDC
                     "
     gene            complement(1804..>2050)
                     /locus_tag="VLF16_11845"
     CDS             complement(1804..>2050)
                     /locus_tag="VLF16_11845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003448000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HSX71613.1"
                     /translation="GYFDYLEQSLGEAEFFVGNTLTQADLAIYSQLQNMEHGGETLDE
                     QRWPALAAHYRRIQARDSVQSLLPGERKIIAKISGKP"
BASE COUNT          313 a          614 c          735 g          388 t
ORIGIN      
        1 gcaccaggcc gctgttgtcg atgatttccg cacgcatcac cgcgggcgag cggagcaggc
       61 cgaggaccag ttcctgggcc agttcggcgt cgatgttgta ggagatacgg gccgccgggt
      121 tgtggctgat ttccagcagc gagtggattt cccggtcgat ggaggcgtct tcgctggcat
      181 aatccaggcc gacctggatg aggctcagca gggtccccag caagaaggcc accagcaccg
      241 tcaatctggc ctgtttgtac gacaggcgat gggtcaggga tatatccatc ggcggggtag
      301 ctgagtcctt gtttttggcg ttggaagcat agcccatagc gccggaggat cggcagtggg
      361 cgagatgagg agttggtcgt ggatgttcgt ctgaacagtt ttctgcagcg cgccgagagc
      421 gtgctggaac gcatcgaacc actgctgccc gcggagcggg tggcgctgga ctggagcgcg
      481 gtgatcgccg cccgctggca gcgcgagggg cgcgcgggct atctgcagcc gctgcgggtg
      541 agcctggatc tgggcctgtc cgacctggtc ggcgtggata cccagcgcga gcagctggcg
      601 cgcaataccc ggcagttcgt cgcgggcctg ccggccaacc atgcgctact gtggggcgcg
      661 cgcggtaccg gcaagtcgtc gctggtgcgc gcgctgctgg ccgagcacgc cggtgccggg
      721 ctgcggctga tcgagatcga gcgcgatcac ctggccgacc tgccgcgggt ggtggaagcg
      781 ctgatcgggc tgccgcagcg cttcgtgctg ttctgcgacg acctgtcgtt cgagtcgggc
      841 gagggcgact accgggtgct caagagcgtg ctggacggct cgctggagcg cgcgccggac
      901 aacgtggtgc tgtacgccac ttccaaccgc cgccacctgg tgccggagaa ggagagcgac
      961 aacctggaca gccgcatggt cgacggcgag ctgcatccga gcgaggcgat cgaggacaag
     1021 atcgccttgt ccgaccgttt cggtctgtgg atatcctttt atcccttcac ccaggaccat
     1081 ttcctcgccg tggtgcggca ctgggtgacg gtgctggcgg ccgacgccgg gctgcagtgg
     1141 agttgggatc acgatctgga agtgctggcc attcgctggg ccctggggcg tggcaatcgc
     1201 aacggccgtt gcgcctacca gttcgctcgc agctgggtcg gccagcgcct gctggaggtg
     1261 cgctcatgat cgatctgcaa caggccggcc agggccgcga gggctacgaa ctgctggccg
     1321 cacagctgga ggcgctgctg gctgacgagc gcgacttcgt cgccaacgca gcgcagttct
     1381 cggccttcct gttccacgag ttggccgacc tcaactgggc cggtttctac ctcaacaagg
     1441 gcgagcagct ggtgttgggg ccgtttcagg gcaaggtggc ctgcgtgcgc atccccttcg
     1501 gcaggggcgt gtgcggcgct gcggcgagca gtttgcagac ccagcgggtc gaggacgtgc
     1561 atgcgtttgc cgggcacatc gcctgcgaca gcgcttccaa cagcgagctg gtggtgccgc
     1621 tggtcaagga cggtcggctg atcggcgtgc tggatctgga cagccccctc accgcgcgtt
     1681 tctcggagga ggatcagctg ggcatcgaac gcctggcggc gatcttcctg cgcctcaccg
     1741 actgctgact cgctggcagt caagaaaaag cccggcattg ccgggctttt tcatctcgag
     1801 gcctcaaggc ttgccgctga tcttggcgat gatcttgcgt tcgccaggca gcaggctctg
     1861 caccgagtca cgtgcctgga tgcgccggta gtgggcggcg agggcaggcc agcgttgctc
     1921 atctagagtt tcgccgccgt gctccatgtt ctgcagctgg ctgtagatgg cgaggtctgc
     1981 ctgggtcagc gtgttgccga cgaagaattc ggcctcgccg agactctgtt ccagatagtc
     2041 gaagtagccc
//
LOCUS       DATIHC010000717         1956 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30028, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000717 DATIHC010000000
VERSION     DATIHC010000717.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1956
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30028"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(95..583)
                     /gene="dadR"
                     /locus_tag="VLF16_11850"
     CDS             complement(95..583)
                     /gene="dadR"
                     /locus_tag="VLF16_11850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator DadR"
                     /protein_id="HSX71614.1"
                     /translation="MRTQHQSRRELDKIDRNILRILQEDGRISFTELGERVGLSTTPC
                     TERVRRLEREGIIMGYHARLNPQQLKASLLVFVEISLDYKSGDTFEEFRRAVLKLPHV
                     LECHLVSGDFDYLVKARINEMASYRKLLGDILLKLPHVRESKSYIVMEEVKESLTLPV
                     PD"
     gene            793..>1956
                     /gene="dadA"
                     /locus_tag="VLF16_11855"
     CDS             793..>1956
                     /gene="dadA"
                     /locus_tag="VLF16_11855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acid dehydrogenase"
                     /protein_id="HSX71615.1"
                     /translation="MRVLVLGSGVIGTASAYYLARAGFEVVVVDRQDGPALETSFANA
                     GQVSPGYASPWAAPGVPLKAIKWLLQQHAPLAIKATGDVDQYLWMAQMLRNCTAARYA
                     VNKERMVRLSEYSRDCLDELRAETGIAYEGRQLGTTQLFRTQAQVDNAAKDIAVLKAS
                     GVPYELLDRDAIARVEPALAGVKHKLAGALRLPNDQTGDCQMFTTQLADMAKALGVEF
                     RFGQNIQRLDAAGDRINGVWIDGKLETADRYVLALGSYSPQLLKPLGIKAPVYPLKGY
                     SLTVPITNPDMAPSSTILDETYKVAITRFDNRIRVGGMAEIAGFDLSLNPKRRATLEM
                     ITNDLYPEGGDVSQASFWTGLRPATPDGTPIVGGTAFRNLFLNTGHGTLGWTMA"
BASE COUNT          344 a          665 c          617 g          330 t
ORIGIN      
        1 atcctgattt ttgtgtttgg aaaatttgac gcaggataag cccgccccgc gcggcccgcc
       61 aagggggacg cggaaaaaac ctgtgccggg cgggtcagtc cggtaccggc agggtcagcg
      121 actccttcac ctcttccatg acgatgtacg acttggattc gcgcacgtgc ggcagcttca
      181 gcaggatgtc gccgagcagc ttgcggtagc tggccatctc gttgatccgc gccttcacca
      241 ggtagtcgaa gtcgccgctg accaggtggc actccagcac gtggggcagc ttgagcacgg
      301 cgcggcggaa ttcctcgaaa gtgtcgccag acttgtagtc caggctgatc tcgacgaaca
      361 ccagcaggct ggccttgagc tgttgcgggt tgaggcgggc gtggtagccc atgatgatgc
      421 cctcgcgctc caggcggcgg acccgctcgg tacagggcgt ggtggacagg ccgacccgct
      481 cgcccagctc ggtgaagctg atgcgcccgt cctcctggag gatgcgcagg atgttgcggt
      541 cgatcttgtc cagttcgcgg cggctctggt gctgggtgcg catggcgggc tccttgaatg
      601 ttgggcgcga taattcactg cagtatgggt gaagtctagc catatcgcct ggactgcatc
      661 ctgtgaaatc gctctgcgcc ggcaactaac gccaaatgcc gggcgataaa cagtgaatat
      721 cgctaccgcc gccttcctat actgcgccgc ataacgcccg gcaaaacaat gcctgcaatg
      781 agggaggcca ccatgcgcgt tctggttctt ggcagcggtg tgatcggcac cgccagcgcc
      841 tactatctgg cccgcgccgg tttcgaggtg gtcgtggtcg accgccagga cggcccggcc
      901 ctggaaacca gcttcgccaa cgcagggcag gtctcccccg gctatgcctc gccctgggcc
      961 gccccgggcg tgccgctgaa ggccatcaag tggctgctgc agcagcacgc gccgctggcg
     1021 atcaaggcca ccggcgacgt cgatcagtac ctgtggatgg cgcagatgct gcgcaactgc
     1081 accgcggccc gctacgcggt gaacaaggag cgcatggtgc ggctgtccga gtacagccgc
     1141 gactgcctcg acgagctgcg cgccgagacc ggcatcgcct acgaaggccg ccagctcggc
     1201 accacccagc tgttccgcac ccaggcccag gtcgacaacg cggccaagga catcgccgtc
     1261 ctgaaggcct ccggcgtgcc ctacgagctg ctcgaccgcg atgccatcgc ccgtgtcgag
     1321 ccggccctgg ccggggtcaa gcacaagctg gccggcgccc tgcgcctgcc caatgaccag
     1381 accggcgact gccagatgtt caccacccaa ctggcggaca tggccaaggc cctgggcgtg
     1441 gaattccgct tcggccagaa catccagcgc ctggatgcgg ccggcgatcg catcaacggc
     1501 gtatggatcg acggcaagct ggagaccgcc gaccgctacg tgctggccct cggcagctac
     1561 agtccgcagc tgctcaagcc gctgggcatc aaggccccgg tgtatccgct caagggttat
     1621 tcgctgaccg tgccgatcac caatccggac atggcgccgt cctcgaccat cctcgacgag
     1681 acctacaagg tcgccattac ccgcttcgac aatcgcatcc gcgtcggcgg catggccgag
     1741 atcgccggct tcgacctgag cctcaacccc aagcgccgcg ccaccctgga gatgatcacc
     1801 aacgatctct atccggaagg cggcgacgtc agccaggcca gcttctggac cggcctgcgc
     1861 ccggccacgc cggatggcac gccgatcgtg ggcggcacgg ccttccgcaa cctgttcctc
     1921 aataccggac acggtactct tggctggacc atggcc
//
LOCUS       DATIHC010000718         1968 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_32456, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000718 DATIHC010000000
VERSION     DATIHC010000718.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1968
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32456"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..586
                     /locus_tag="VLF16_11860"
     CDS             <1..586
                     /locus_tag="VLF16_11860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014596632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HSX71616.1"
                     /translation="FVGRTLQMWNRYRDLKAFHGKPWLLRFFDQIRFYPVSASDLLQI
                     RRDFPLGRFELRIEHSELALADYQDFLAEEAEGIDAFRSQQRAAFDAERQRWIDSGQA
                     HFEVDEAVVEPGDDAPLGAGQHGIDSHIAGNLWQVQVEAGSEVKAGDVLVILESMKME
                     IPLVAPVGGVVREVRVQPGSPVRAGQRVVVLEEA"
     gene            756..1820
                     /locus_tag="VLF16_11865"
     CDS             756..1820
                     /locus_tag="VLF16_11865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017519442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2157 domain-containing protein"
                     /protein_id="HSX71617.1"
                     /translation="MPLTRDQAQQRADDIQAFRREAKRLRAEGSLNPGDEIFARIAAH
                     HDQVLAQYRASFDIDHDSQTKRLSLSMRVVSLLGALALAASLLFFFYQFWGLFGEALQ
                     VGILIGFSLGSLLLTGLLIKRDASGYFVKLAAVLAMACFVLNLHMLGQIFNITPSDNA
                     LLCWAAYALLLAYACQARLLLAVGLVCLLAYSGTRIGDWCGWLWLEAAERPEHFLPGG
                     LLVFLLPALLSQARYSGFAATYRIVGMLALLLPMLVLANWGRGSYLPFDYGSIEKGYQ
                     LLGFAASALFIWLGIRRDWAEVTLLGQLSFLLFLFIKMVDWWWDVLPKYLFFLILGLT
                     AVLALLVLGRLRRRHTGGAA"
     gene            1817..>1968
                     /locus_tag="VLF16_11870"
     CDS             1817..>1968
                     /locus_tag="VLF16_11870"
                     /inference="COORDINATES: protein motif:HMM:NF027432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4824 family protein"
                     /protein_id="HSX71618.1"
                     /translation="MNARLLLPAGLGLILLSNAAALAGVWYNRQGEPQSRLLLSEREL
                     RRDWEGP"
BASE COUNT          262 a          691 c          657 g          358 t
ORIGIN      
        1 gttcgtcggc cgcaccctgc agatgtggaa ccgctaccgc gacctcaaag cgttccacgg
       61 caagccctgg ctgctgcgct tcttcgacca gatccgcttc tacccggtgt cggcctccga
      121 cctgctgcag atccgccgcg acttcccgct cggccgcttc gagctgcgca tcgagcacag
      181 cgagctggcc ctggccgact accaggactt cctcgccgag gaagccgagg gcatcgacgc
      241 cttccgcagc cagcaacgcg ccgccttcga cgccgaacgc cagcgctgga tcgattccgg
      301 ccaggcgcac ttcgaggtgg acgaggcggt ggtcgagccc ggcgacgatg ccccgctcgg
      361 cgccggccag cacggcatcg acagccatat cgccggcaac ctctggcagg tgcaggtgga
      421 ggccggaagc gaagtgaagg ccggcgatgt gctggtgatc ctcgagtcga tgaagatgga
      481 gattccgctc gttgcgcctg ttggcggcgt ggtccgcgag gtgcgggtgc agccgggctc
      541 gccggtgcgt gccgggcagc gggtggtggt gctggaggag gcctagcggc gccgcgctat
      601 ctgctcctgt cggcaggcca gtcatcgctt gaaacacttg cacaccgggc tgttatcgcc
      661 aggtgtgcgg gactgggcag aacggcctcg ccggtggttt ttcaatcgcc ggcgagcggc
      721 tacagtggcg ggcactgccg ccacaggtat gaaccatgcc gctgacccgc gaccaggccc
      781 agcaacgggc cgacgatatt caggcgttcc gccgcgaggc aaagcgcctg cgtgccgagg
      841 gctcgctgaa tccgggcgat gaaatcttcg cccgcatcgc cgcccatcac gaccaggtgc
      901 tggcgcagta ccgcgccagc ttcgatatcg atcacgactc gcagaccaag cgcctgtcgc
      961 tgagcatgcg cgtggtctcg ctgctcggcg cgctggcctt ggcggccagc ctgctgttct
     1021 tcttctatca gttctggggc ctgttcggcg aagcgctgca ggtcggcatc ctcatcggct
     1081 tctccctcgg cagcctgttg ctgaccgggc tgctgatcaa gcgcgacgcc tcgggctact
     1141 tcgtcaagct ggccgccgtg ctggcgatgg cgtgcttcgt cctcaacctg cacatgctcg
     1201 ggcagatctt caacatcacg ccctcggaca acgccctgct gtgctgggcc gcctatgcgc
     1261 tgctgctggc ctacgcctgc caggcgcgcc tgctgctggc cgtcggcctc gtctgcctgc
     1321 tggcctacag cggcacgcgc atcggcgact ggtgcggctg gctgtggctg gaggcggccg
     1381 agcggccgga gcacttcctg cccggcggcc tgctggtgtt cctgctgccg gcgctgctgt
     1441 cccaggcgcg ctacagcggc ttcgccgcca cctaccgcat cgtcggcatg ctggccctgc
     1501 tgctgccgat gctggtgctg gccaactggg gccgcggcag ctacctgccg ttcgactacg
     1561 gcagcatcga gaagggctac cagttgctcg gcttcgccgc ctcggcgctg ttcatctggc
     1621 tcggcatccg tcgcgactgg gcggaagtca ccctgctcgg ccagctgtcg ttcctgctgt
     1681 tcctgttcat caagatggtc gactggtggt gggacgtgct gcccaagtac ctgttcttcc
     1741 tcatcctcgg cctgaccgcc gtcctcgccc tgctggtgct cggccgcctg cgccgtaggc
     1801 ataccggagg tgccgcatga acgcgcgcct gctgctgccc gccggcctcg ggctgatcct
     1861 gctgagcaac gccgcggcgc tggccggcgt ctggtacaac cgccagggcg agccgcagag
     1921 ccgcctgctg ctctccgagc gcgagctgcg ccgcgactgg gaaggacc
//
LOCUS       DATIHC010000719         2242 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30041, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000719 DATIHC010000000
VERSION     DATIHC010000719.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2242
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30041"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            126..545
                     /locus_tag="VLF16_11875"
     CDS             126..545
                     /locus_tag="VLF16_11875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013789365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71619.1"
                     /translation="MRLPLLLCLFTLSACASPLPPADPQQAWVELYASAGYTLMAHKL
                     DDEQTRDGRYFQVPPGAHELQVRFQFEVPGGGGGSDFSSEPIQMTCQLRFRYDGFAAG
                     QRYRIEARPLQRKAQGWLYGADRQVLARAEVLRCGTF"
     gene            complement(549..974)
                     /locus_tag="VLF16_11880"
     CDS             complement(549..974)
                     /locus_tag="VLF16_11880"
                     /EC_number="1.11.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA];
                     GO_process: GO:0006972 - hyperosmotic response [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0033194 - response to hydroperoxide
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HSX71620.1"
                     /translation="MKKRASAHWQGGIKDGKGSISTQSGALEDNPYGFNTRFEDQPGT
                     NPEELIAAAHAGCFSMALSKELGDRGMTAESLETQAEVWLDKEEAGFRISAVHLTLTA
                     RVPGADRDAFEQAVQAAKTGCPVSKVLDTEISLQATLEN"
     gene            complement(1042..2040)
                     /locus_tag="VLF16_11885"
     CDS             complement(1042..2040)
                     /locus_tag="VLF16_11885"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003288460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HSX71621.1"
                     /translation="MSKLSNTPFAVLDLAPMRDDDVGAGPALQRSLDLARHVERLGFS
                     RMWVAEHHNMEGIASAATAVLLGYLAANTSTLRLGSGGVMLPNHAPLVVAEQFGTLEA
                     LYPGRIELGLGRAPGADQATARALRRDRLGSPDDFPQDVEELETLLGPRQPGQTVLAV
                     PGVDSGVPIWLLGSSLFSAQLAAQKGLPYAFASHFAPRYLHQALRIYRENFQPSAVLD
                     KPYAMIGVPLIAAPTDEEAEFLATTAFQRILALIRGQSLVLRPPVESMVGRWLPHEQQ
                     AVGDFFGLAVVGGPEKVRARLEVLLEQTGADELIFTCDLYQPEHRLRSFDLVAGLR"
     gene            complement(2141..>2242)
                     /locus_tag="VLF16_11890"
     CDS             complement(2141..>2242)
                     /locus_tag="VLF16_11890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1161 domain-containing protein"
                     /protein_id="HSX71622.1"
                     /translation="AYTLEVVDKGGAGDKQVVGSCEGGSKEIVYQRG"
BASE COUNT          326 a          766 c          799 g          351 t
ORIGIN      
        1 gcttccgccc ctgggcgcag ctgctggacg aacgcggcga gagccttgcg cgggcacgag
       61 agggccgctg cggcgccgtc tgatcggcgt tatgctgact cactccgctt ccgaggatcg
      121 ccaccatgcg cctgcccctg ctgctctgcc tgttcaccct tagcgcctgt gccagcccgc
      181 tgccaccggc cgatccgcag caggcctggg tcgagctgta cgccagcgcc ggctacacgc
      241 tgatggcgca caagctggac gacgagcaga cgcgcgacgg ccgctacttc caggtgccgc
      301 cgggcgccca cgagctgcag gtgcgcttcc agttcgaggt gccgggcggc gggggcggca
      361 gcgacttcag cagtgagccg atccagatga cctgccagct gcgcttccgc tacgacggat
      421 tcgccgccgg ccagcgctat cgcatcgagg cgcgaccgct gcaacgcaag gctcagggct
      481 ggctgtacgg cgcagaccgc caggttctgg cgcgcgccga ggtgctgcgc tgcggcacct
      541 tctaacggtc agttttccag cgtcgcctgc aggctgatct cggtatccag caccttggac
      601 accgggcagc cggtcttggc cgcctgcacg gcctgctcga aggcgtcgcg gtcggcgccc
      661 ggcacacgcg ccgtgagggt caggtgcacg gcgctgatgc gaaagcccgc ctcctccttg
      721 tccagccaga cttcggcctg ggtctccagg ctctcggcgg tcatgccgcg gtcgcccagc
      781 tccttggaca gggccatgga gaagcagccc gcatgggcgg cggcgatcag ctcctcgggg
      841 ttggtgccgg gctggtcttc gaagcgggtg ttgaagccgt aggggttgtc ctcgagcgcg
      901 ccgctctggg tggagatgct gcccttgccg tccttgatgc cgccctgcca gtgggccgaa
      961 gccctcttct tgatggtcat gtcgcgttcc tctcgtcatt gggtacctgt tgagaggaac
     1021 gcgaggccgg caaagttcgc ctcaacgcaa cccggcgacc aggtcgaagc tgcgcagacg
     1081 atgctcgggc tggtacaggt cgcaggtgaa gatcagctcg tccgcgccgg tctgctccag
     1141 cagcacctcc aggcgtgcgc gcaccttctc cggcccgccg accaccgcca ggccgaagaa
     1201 gtcgcccacc gcctgctgct cgtggggcag ccagcggccg accatgctct ctaccggcgg
     1261 gcgcagaacc agactctggc cgcggatcag cgcgagaatg cgctggaagg cggtggtggc
     1321 gaggaactcg gcctcctcgt cggtgggcgc ggcaatcagc ggcacgccga tcatggcgta
     1381 gggcttgtcc agcaccgccg agggctgaaa gttctcgcgg tagatgcgca gcgcctggtg
     1441 caggtagcgc ggcgcgaagt gcgaggcgaa ggcgtagggc agacccttct gtgccgccag
     1501 ctgggcgctg aacaggctgg agccgagcag ccagatcggc acgccgctat cgacgccggg
     1561 cacggccagc accgtctggc cgggctggcg agggccgagc agggtctcca attcctcaac
     1621 gtcctgcggg aagtcgtccg ggctgcccag gcggtcgcgg cgcagggcgc gggcggtggc
     1681 ctggtcggca cccggggcgc ggccgagacc gagctcgatg cgcccgggat acagcgcctc
     1741 aagagtgccg aactgctccg ccaccaccag tggcgcgtgg ttgggcagca tcaccccgcc
     1801 cgagcccagg cgcagggtcg aggtattcgc cgccaggtag ccgagcagca cggcggtggc
     1861 ggcactggcg atgccctcca tgttgtggtg ctcggccacc cacatgcgcg agaagccgag
     1921 ccgctcgaca tggcgggcga ggtccaggga gcgctgcagc gcggggccgg cgccgacgtc
     1981 gtcgtcgcgc atgggcgcca ggtcgagcac ggcgaagggg gtgttggaca gcttgctcat
     2041 gggaggcctc ctgaggtcat ttctcggata tggggccgcc cggcacaaat gaaaaggccg
     2101 gagcccctca tgagactccg gcccggtgcg cggcggcgcg tcagccgcgt tggtagacga
     2161 tttccttgct accgccctcg cagctgccga ctacctgctt gtcgccggcg ccgcccttgt
     2221 cgaccacttc cagggtgtag gc
//
LOCUS       DATIHC010000720         2316 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13552, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000720 DATIHC010000000
VERSION     DATIHC010000720.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2316
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13552"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..401)
                     /locus_tag="VLF16_11895"
     CDS             complement(<1..401)
                     /locus_tag="VLF16_11895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdenumtransferase MoeA"
                     /protein_id="HSX71623.1"
                     /translation="MSLLPVEQALQRLLALAQASPIREHEIVTLATADGRVLATDLVA
                     GLDLPPWPNSAMDGYALRLADWRGEPLAVSQRILAGQAPEPLQLGTCARIFTGAPMPS
                     GADTVEMQENVELLEEGRVQFREPLEAGQNVR"
     gene            complement(398..937)
                     /gene="moaB"
                     /locus_tag="VLF16_11900"
     CDS             complement(398..937)
                     /gene="moaB"
                     /locus_tag="VLF16_11900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein B"
                     /protein_id="HSX71624.1"
                     /translation="MSHKAEAAFAPLNIAVLTVSDTRTLDTDTSGQLFVDRLTAAGHH
                     LAARVLLKDDLYRVRAQVAQWIAEDEVQVVLITGGTGFTARDSTPEAVACLLDKQVDG
                     FGEYFRQISVADIGSSTMQSRALAGLANGTLVCCLPGSTNACRTAWDGILGEQLDSRH
                     RPCNFVPHLKAAAPCETRG"
     gene            1004..1582
                     /gene="mobA"
                     /locus_tag="VLF16_11905"
     CDS             1004..1582
                     /gene="mobA"
                     /locus_tag="VLF16_11905"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012700046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0061603 - molybdenum cofactor
                     guanylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase MobA"
                     /protein_id="HSX71625.1"
                     /translation="MTTALPPCSILLLAGGRGRRLGGRDKGLVEWRGRPLIDHLYQVA
                     RPLTDDLILSCNRNAERYAAFADRLVADDAADFFGPLAGLLGGLAAARHDWLLMLPCD
                     APQVDEALLRQLRQCALHYGDRPVMVRQGEQWQPLFAMMPHMLLAPLRQAWDNGERSP
                     LRALLALDAQPCPCDETDPRLANLNTPELLRG"
     gene            1638..1850
                     /locus_tag="VLF16_11910"
     CDS             1638..1850
                     /locus_tag="VLF16_11910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003091247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="HSX71626.1"
                     /translation="MTQRFLIALLAAGLLAGCSTPSVITLNDGTRIQTVDVPDFDEDS
                     GFYEFEELDGKAARVNKDQVITVREL"
     gene            1945..2021
                     /locus_tag="VLF16_11915"
     tRNA            1945..2021
                     /locus_tag="VLF16_11915"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1979..1981,aa:Pro,seq:cgg)
     gene            complement(2149..2225)
                     /locus_tag="VLF16_11920"
     tRNA            complement(2149..2225)
                     /locus_tag="VLF16_11920"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2189..2191),aa:Arg,seq:cct)
BASE COUNT          388 a          762 c          753 g          413 t
ORIGIN      
        1 cgcacgttct gcccggcctc gagcggctcc cggaactgca cccgcccctc ctcgagcagc
       61 tcgacgttct cctgcatttc taccgtatcg gcgccggacg gcatgggcgc gccggtgaag
      121 atgcgcgcgc aggtcccgag ctgcagaggc tcgggcgcct ggccggcgag gatgcgctgg
      181 ctgaccgcca gcggctcgcc gcgccagtcg gccaggcgca gggcatagcc atccatggcg
      241 ctgttcggcc agggcggcag gtccaggccg gcgaccagat cggtggccag cacgcgacca
      301 tcggcggtcg ccagggtgac gatttcgtgt tcgcgaatag ggctggcctg ggccagtgcc
      361 agcagacgct gcagggcctg ctcgaccggc agcaggctca tccgcgcgtc tcgcagggag
      421 ctgcggcctt gagatggggc acgaagttgc agggccggtg acggctgtcc agctgttcgc
      481 caaggatgcc gtcccaagcg gtgcggcagg cattggtcga ccccggcagg cagcacacca
      541 gcgtgccgtt ggccagaccg gccagagccc gcgactgcat ggtggaagag ccgatgtccg
      601 ccaccgaaat ctgccggaaa tactcgccaa aaccatccac ctgcttgtcc agcaagcagg
      661 ccaccgcctc gggcgtgctg tcgcgagcgg tgaagccggt gccgccggtg atcagcacca
      721 cctggacctc gtcctcggcg atccactgcg ccacctgtgc gcggacgcgg tagagatcgt
      781 ccttgagcag cacccgtgcc gccaggtgat ggccggcggc ggtgaggcgg tcgacgaaca
      841 gttggccgga ggtgtcggta tccagggtac gggtatcgct gacggtgagc accgcgatgt
      901 tcagcggcgc aaaagccgcc tcggccttgt ggctcatggc atggtccggt tgtggcgaaa
      961 actggccggt gttatatcac aggccccgac ccagagcgcc gccatgacca ctgccctgcc
     1021 gccctgctcc atcctgctgc tggccggcgg ccgcggccga cgcctgggcg gccgggacaa
     1081 gggcctggtc gagtggcgcg gccgtccgct gatcgatcac ctttatcagg tggcgcgacc
     1141 gctgacggac gacctgatcc tctcctgcaa tcgcaacgcc gagcgctatg ccgcgttcgc
     1201 cgatcggctg gtcgccgatg acgccgccga tttctttgga ccgctggccg ggctgctggg
     1261 gggactggct gccgcacgcc acgattggct gctgatgttg ccctgcgacg cgccccaggt
     1321 cgacgaggcg ctgctgcggc agttgcgtca atgcgccctc cactatggcg acagaccggt
     1381 gatggttcgc cagggagaac agtggcagcc gctgttcgca atgatgcctc acatgctgtt
     1441 ggccccgctg cgccaggcct gggataacgg cgagcgtagc ccgctgcggg cgctgttggc
     1501 gctggatgca cagccctgcc catgcgacga gacggacccg cgcctggcca acctcaatac
     1561 cccggagctt ttgcggggct agcagggaac cgagcgccgc ctcgctcgtc atacgtaccc
     1621 caagacagga ggtacccatg actcagagat tcctcatcgc cttgctggcc gccggcctgc
     1681 tcgcgggctg ctcgacgccc agcgtgatca ccctcaacga cggtacccgc atccagaccg
     1741 tggacgttcc cgatttcgac gaggattccg gtttctatga attcgaggag ctcgacggca
     1801 aggccgcgag ggtgaacaag gatcaggtaa tcaccgtcag ggagctgtga ccctcgctcg
     1861 gcccacaagg agcggggcca ctaaaaaact tctagctaac cccttgtgcc gcaaaacttt
     1921 ttcggtagaa tgcgcgcaat tcttcggagc gtagcgcagc ttggtagcgc gtctcgttcg
     1981 ggacgagaag gtcgctggtt cgaatccagt cgctccgacc atttcccgat ctcagcctgt
     2041 ctcaggctgt gtcaaagcct agagaaaccg gcccctgcgg ccggtttttt cgtttccgtc
     2101 gccataaaaa gaaagcccgc acactctatg gtcgcgggct ttttcatgtg gcgtcccaga
     2161 gaggggtcga acctccaacc ttccccttag gagggggatg ctctatccaa ttgagctact
     2221 gggacaacgg ggcggcatgt taacggccgg gccgatattt gtcatgccat tcgctttgtt
     2281 acgattttgc ttcagccagc cttcatagct ctagcc
//
LOCUS       DATIHC010000721         2779 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_38301, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000721 DATIHC010000000
VERSION     DATIHC010000721.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2779
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38301"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1114
                     /locus_tag="VLF16_11925"
     CDS             <1..1114
                     /locus_tag="VLF16_11925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253097.1"
                     /note="GTPase; similar structure to tubulin; forms
                     ring-shaped polymers at the site of cell division; other
                     proteins such as FtsA, ZipA, and ZapA, interact with and
                     regulate FtsZ function; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HSX71627.1"
                     /translation="FELVDNVPQSAVIKVIGVGGGGGNAVNHMIQNNIEGVEFICANT
                     DAQALKNVGARTVLQLGPGVTKGLGAGTNPEIGRQAAMEDRERIAEVAKEMGILTVAV
                     VTRPFPFEGRKRMQVADEGIRALSECVDSLITIPNEKLLTILGKDASLLSAFAKADDV
                     LSGAVRGISDIMQRPGLMNVDFADVKTVMGEMGMAMMGTGCASGPNRAREATEAAIRN
                     PLLEDVNLQGARGILVNITAGLDLSLGEYAAVGEIIEAFASEAATVKVGAVIDPDMRD
                     ELHVTVVATGLGARIEKPVKVIDNTVPASAVAAPAATISAAPRAAEQPAVNYKDYERP
                     TVQRQSLAGSAAAAKLNTQDDLDYLDIPAFLRRQAD"
     gene            1221..2132
                     /gene="lpxC"
                     /locus_tag="VLF16_11930"
     CDS             1221..2132
                     /gene="lpxC"
                     /locus_tag="VLF16_11930"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HSX71628.1"
                     /translation="MIRQRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFRRTDL
                     DPVVEIPARAENVGETTMSTTLVNGEVKVDTVEHLLSAMAGLGIDNAYVELSASEVPI
                     MDGSAGPFVFLIQSAGLEEQEAPKKFIRVLREVTVEEGDKRATFLPFDGFKVSFEIDF
                     DHPVFRGRTQTASVDFSSTSFVKEVSRARTFGFMRDIEFLRSQNLALGGSVENAIVVD
                     EFRVLNEDGLRYEDEFVKHKILDAIGDLYLLGNSLIGEFRGFKSGHALNNRLLRTLIE
                     QTDAWEVVIFDDASTAPISYMRPVAAV"
     gene            complement(2195..2650)
                     /locus_tag="VLF16_11935"
     CDS             complement(2195..2650)
                     /locus_tag="VLF16_11935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003284770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DciA family protein"
                     /protein_id="HSX71629.1"
                     /translation="MSLRPPAAKTPSTLLREHKPLQALFSAARRLGKLQALVEAQLEP
                     AAREHCQVASWQDGCLLLLSSNGHWATRLHYQQRRLLRLLQAMPEFAGLQKIQVKVRP
                     PNTQVAYQANKTALSEAAADSLCSAAEGIGDPKLRAALERLARNARRDE"
BASE COUNT          495 a          901 c          887 g          496 t
ORIGIN      
        1 gttcgagctc gtagataacg tgccgcaaag tgcagtcatc aaagtgatcg gcgtgggcgg
       61 cggcggcggt aatgccgtca accacatgat ccagaacaac atcgaaggcg tggaattcat
      121 ctgcgccaac accgacgccc aggcgcttaa gaacgtcggc gcgcgcaccg tgctgcagct
      181 tggcccgggt gtgaccaagg gcctgggtgc cggcaccaac ccggaaattg gccgtcaggc
      241 cgccatggaa gaccgcgagc gcatcgccga agtggccaag gagatgggca tcctcaccgt
      301 tgccgtggtg acccgcccgt tcccgttcga gggtcgcaag cgcatgcagg tcgccgacga
      361 gggcatccgt gccctgtccg aatgcgtcga ctcgctgatc accatcccca acgagaagct
      421 gctgaccatc ctgggcaagg acgccagcct gctgtccgcc ttcgccaagg ccgacgacgt
      481 gttgtccggc gccgtgcgtg gcatctccga catcatgcag cgtccgggcc tgatgaacgt
      541 cgactttgcc gacgtgaaga ccgtgatggg cgaaatgggc atggccatga tgggcaccgg
      601 ctgcgccagc ggtccgaacc gtgcgcgcga ggccaccgag gcggccatcc gcaacccgct
      661 gctggaagac gtcaacctac agggcgcccg cggcatcctg gtcaacatca ccgccggtct
      721 ggacctgtcg ctcggcgaat acgccgcggt gggcgagatc atcgaggcct tcgcctcgga
      781 agcggcgacc gtcaaggtcg gtgcggtgat cgatccggac atgcgcgacg agctgcacgt
      841 gaccgtggtg gccaccggcc tgggcgcgcg catcgagaag ccggtcaagg tgatcgacaa
      901 cacagttccg gcgtccgccg ttgccgctcc ggctgccacc atcagcgccg ccccgcgcgc
      961 cgccgagcag ccggccgtca actataagga ctacgagcgc ccgaccgttc agcgccaaag
     1021 cctcgccggc agtgccgccg cggccaagct gaacactcag gacgacctgg attacctcga
     1081 catcccggcc ttcctgcgtc gtcaggctga ttgatgctgt ctatcaggag tatattggtg
     1141 attggtgttc agcaaagggc ggttctgcta tcatcgccgc ccattgttga aaacagttcg
     1201 caacaagcgc agccaaagcc atgatcagac aacgcaccct gaagaacatc atccgagcca
     1261 ccggcgttgg cctgcactcg ggggaaaagg tttacctgac cctcaagccg gccccggtgg
     1321 ataccggtat cgtgttccgt cgcaccgatc tggacccggt cgtggaaatc cccgcccgcg
     1381 ccgagaacgt cggtgagacc accatgtcga ccaccttggt caatggtgag gtcaaggtgg
     1441 acaccgtcga gcacttgctt tcggccatgg caggcctggg catcgacaac gcctacgtcg
     1501 agctgtcggc gtcagaagtc ccgatcatgg atggcagtgc cggtcccttt gtattcctga
     1561 ttcagtcggc tggcctggaa gagcaagaag caccgaagaa attcatccgc gtgctgcgcg
     1621 aagtaacggt ggaggagggc gacaagcgcg ccaccttcct gcccttcgac ggcttcaagg
     1681 tgagcttcga gatcgatttc gatcacccgg tcttccgcgg tcgtacccag accgccagcg
     1741 tcgacttctc cagcacttcc ttcgtcaagg aagtgagccg cgcgcggacc ttcgggttca
     1801 tgcgcgatat cgagttcctg cgttcgcaga acctggcact cggcggcagc gtggagaacg
     1861 ccatcgtggt ggacgagttc cgcgtgctca acgaagacgg cctccgttac gaggacgagt
     1921 tcgttaagca caagatcctc gacgccattg gcgatctgta cctgctgggt aacagcctga
     1981 tcggcgaatt ccgcggcttc aagtcgggcc acgccctgaa caatcgtctg ctgagaaccc
     2041 tcatcgagca gacggatgcc tgggaagtgg tgatcttcga cgatgccagc accgcgccga
     2101 tctcctacat gcgcccggta gcggccgtgt aagcactacc tcttccttct gttgtattca
     2161 ggccacccac gggtggcctg tttttttccg ctatctattc gtcgcgccgg gcattgcgcg
     2221 cgagccgctc gagggcggcg cgtagcttgg ggtcgccgat accctcggcg gcgctgcaca
     2281 ggctgtcggc ggcggcttcg gacagcgcgg tcttgttcgc ctgatatgcc acctgggtat
     2341 tcggcgggcg caccttgacc tggatcttct gcaggccggc gaattccggc atcgcttgca
     2401 gcagccgcag caggcggcgc tgctggtaat gcaggcgggt ggcccagtgg ccgttgctgc
     2461 tcagcagcag caggcagccg tcctgccagc tggcgacctg gcaatgctcg cgcgccgccg
     2521 gctccagctg ggcctccacc agcgcctgca gcttgcccag gcgacgcgcg gcgctgaaca
     2581 gcgcctgcag cggcttgtgt tcgcgcagca gggtcgaggg cgtcttggcg gcaggggggc
     2641 gcaggctcat ggcggtggat tcgtgaacgg ggccacccat gttagcaaag gcccttgcag
     2701 ctgtcggtct ccgtccccat atagctagcc ggttcgcttg cgcgagtgcc cggcgcctgc
     2761 cgtcgatcgc gggagtcgc
//
LOCUS       DATIHC010000722         1603 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_38302, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000722 DATIHC010000000
VERSION     DATIHC010000722.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1603
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38302"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            182..1279
                     /locus_tag="VLF16_11940"
     CDS             182..1279
                     /locus_tag="VLF16_11940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017360629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter substrate-binding
                     protein"
                     /protein_id="HSX71630.1"
                     /translation="MRTSFRKTLTAAAVALGLTGVAQAEQPTVHIYNWSDYIGETTLE
                     DFEKATGIKPSYDVFDSNETLEGKLLAGRSGYDIVVPSNHFLGKQIKAGAFQKLDRSL
                     LPNWKNLDPALLKQLEVNDPGNLYAVPYLWGTNGIGYNVEKVKAALGVEEVDSWAVLF
                     EPENMKKLSSCGVAFMDSPDELFPAMLNYLGLDPRSTKSEDYKKAEAKLLEVRPYVTY
                     FHSSKYIGDLANGNICVAFGYSGDVFQAAARAEEAGKGIEIAYSIPKEGANLWFDLMA
                     IPADAKNVKEAHAFMNYLLDPAVIAKVSDYVGYANPNPASDKLMDQEVRNDPSIYPSQ
                     EVMNKLYISTELPPKIMRQMTRSWTKIKSGQ"
     gene            1394..>1603
                     /locus_tag="VLF16_11945"
     CDS             1394..>1603
                     /locus_tag="VLF16_11945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSX71631.1"
                     /translation="MAVASSAYKKALEGSQQPKEVLVKIDRVTKKFDETIAVDDVSLT
                     INKGEIFALLGGSGSGKSTLLRMLAG"
BASE COUNT          352 a          525 c          469 g          257 t
ORIGIN      
        1 ccggagcccc gcaggaggct ccatgaccca cttcgagcac cgttacacac gagccccaca
       61 cagctccgtg cgcgggcggc tgggcgaaga acggcatgga tgtcagggat aggacaacgc
      121 ttttttcacc acgccgggtc gcggtgcgac ctgccagatc aacaagaaag aggaccgacg
      181 tgtgcgaact tccttccgta aaaccctgac cgctgcggcg gtggccctgg gtctgaccgg
      241 tgttgcccag gcagagcaac ctaccgtgca catctacaac tggagcgact acatcggcga
      301 aaccacgctg gaggacttcg agaaggccac cggcatcaag ccgagctacg acgtcttcga
      361 ctccaacgaa accctggaag gcaaactgct ggcgggccgt agcggctacg acatcgtggt
      421 gccgtccaac catttcctcg gcaagcagat caaggccggt gcgttccaga aactcgaccg
      481 ctccctgctg cccaactgga agaacctcga cccggcgctg ctcaagcagc tggaagtcaa
      541 cgatccgggc aacctctacg ccgtccccta cctgtggggc accaacggca tcggctacaa
      601 cgtcgagaag gtcaaggccg cgctgggcgt cgaggaggtc gactcctggg ccgtgctgtt
      661 cgagccggag aacatgaaga agctgagcag ctgcggcgtc gccttcatgg actcgccgga
      721 cgagctgttc ccggccatgc tcaactacct gggcctcgat ccgcgcagca ccaagtccga
      781 ggactacaag aaggccgaag ccaagctgct ggaagtgcgc ccctacgtga cctacttcca
      841 cagctcgaag tacatcggtg acctggccaa cggcaacatc tgcgtcgcct tcggctactc
      901 cggtgacgtg ttccaggccg ccgcccgcgc cgaagaggcg ggcaagggca tcgagatcgc
      961 ctacagcatc ccgaaggaag gcgccaacct gtggttcgac ctgatggcca ttccggccga
     1021 cgcgaagaac gtcaaggaag cccacgcctt catgaactac ctgctcgacc cggcggtgat
     1081 cgccaaggtc agcgattacg ttggctatgc caaccccaac ccggcgtccg acaagctgat
     1141 ggatcaggag gtgcgtaatg atccttccat ctatccaagc caggaagtca tgaacaaact
     1201 ctacatttcg acggagctgc cgccgaagat catgcgccag atgacccgta gctggaccaa
     1261 gatcaagtcg ggtcagtaag cgacactcgc aattgccgta cggcgggccg ggcctgccgt
     1321 acggacccgc tacgccaggc gtggcagatt acattcgggc ccctggccca ctttttcccg
     1381 ggagtttttg gaaatggcag tcgcctccag cgcctacaag aaagccctag agggcagcca
     1441 gcaacccaag gaggtgctgg tcaagatcga tcgcgtgacg aagaagttcg acgaaaccat
     1501 cgccgtcgac gacgtctcgc tgaccatcaa caagggcgag atcttcgccc tgctcggcgg
     1561 ctccggctcc ggcaagtcga ccctgctgcg catgctcgcc ggc
//
LOCUS       DATIHC010000723         2026 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_15135, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000723 DATIHC010000000
VERSION     DATIHC010000723.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2026
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15135"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1550
                     /locus_tag="VLF16_11950"
     CDS             <1..1550
                     /locus_tag="VLF16_11950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008082372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HSX71632.1"
                     /translation="VFGVGLAQVLLTAVVIGTVALFGFHQPLPVAMVLGLGLALSSTA
                     FGLQLLAERKELTAPHGRMAFAILLFQDIAAIPLIALVPMLGEASPHPLPGNELQGLL
                     EVFGSIALVVLGGRYLLRPVFRIVARTNIREVSTATALLVVIGTAWLMELAGISMALG
                     AFLAGMLLADSEYRHELESHIEPFKGLLLGLFFMSVGMAANLALLWREPLLVLGLTLL
                     LIGLKLPVLLLVGRLAGGLSRVSAVRLAVLLAAGGEFAFVVFRMARGEQLLDAYTHDL
                     LVIAITLSMALTPPMVLLAAHWFKAAPASPRPVPPELEKMDSDTPRVVLAGMGRMGQV
                     IARVLHAQRVPFVALDTSVDAVEMSRSLGDMPIFYGDPLRPEILRAAQLDKAEWFIVA
                     TDDPETNLKTAEMVRRLYPHVKIIARARNRQHVHKLWDLNAQAVRETFHSSLEMSRQV
                     LRGLGLSEEQAAARLRRFQRHDEEVLEAQHKVYDNQAAVQQTAREARAELARLFSSDD
                     SEERRPN"
     gene            complement(1719..>2026)
                     /locus_tag="VLF16_11955"
     CDS             complement(1719..>2026)
                     /locus_tag="VLF16_11955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249474.1"
                     /note="involved in the sodium dependent uptake of proline;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sodium:proline symporter"
                     /protein_id="HSX71633.1"
                     /translation="RVLGLVSYAWAGFGAAFGPVVILSVLWKGMTRNGALAGMIVGAV
                     TVVVWKNWIGLGLYEIIPGFILATLAIVVFSRIGNAPSAAMNKRFDEAEQEYQDATQ"
BASE COUNT          289 a          705 c          712 g          320 t
ORIGIN      
        1 cggtgttcgg cgtgggcctg gcccaggtgc tgctgaccgc cgtggtgatc ggcacggtgg
       61 ccctgttcgg tttccaccag ccgctgccgg tggccatggt gctgggcctg ggtctggcgc
      121 tgtcgtccac cgccttcggc ctgcagctgc tggccgaacg caaggaactg accgcgcccc
      181 acgggcgcat ggccttcgcc atcctgctgt tccaggacat cgccgcgatt ccgctgatcg
      241 ccctggtgcc gatgctcggc gaggcctcgc cgcatccgct gccgggcaac gagctgcagg
      301 ggctgctcga ggtgttcggc agcatcgccc tggtggtgct cggcgggcgc tacctgctgc
      361 gcccggtgtt ccgcatcgtc gcccgcacca acattcgcga ggtgtccacc gccaccgccc
      421 tgctggtggt gatcggcacc gcctggctga tggagctggc cggcatttcc atggccctgg
      481 gcgcgttcct cgccggcatg ctgctggccg attcggagta ccgccacgag ctggaatcgc
      541 acatcgaacc gttcaagggg ctgctgctcg ggctgttctt catgagcgtg ggcatggccg
      601 ccaacctcgc cctgctgtgg cgcgaaccgc tgctggtgct gggcctgacc ctgctgctga
      661 tcggcctcaa gctgccggtg ctgctgctgg tcggccgcct ggccggcggc ctgtcgcggg
      721 tcagcgcggt gcgcctggcc gtgctgctgg cggccggcgg cgagttcgcc ttcgtggtgt
      781 tccgcatggc ccgcggcgag cagctgctgg atgcctacac ccatgacctg ctggtgatcg
      841 ccatcaccct gtcgatggcc ctgaccccgc cgatggtgct gctcgccgcc cactggttca
      901 aggccgcgcc cgcctcgccg cggccggtgc cgccggagct ggagaagatg gacagcgaca
      961 cgccgcgcgt ggtgctggcc ggcatgggcc gcatgggcca ggtgatcgcc cgcgtgctgc
     1021 acgcgcagcg ggtgcccttc gtcgccctgg acacctcggt ggacgcggtg gagatgtcgc
     1081 gcagcctggg cgacatgccg atcttctacg gcgacccgct gcgtccggaa atcctgcgcg
     1141 ccgcccagct ggacaaggcc gagtggttca tcgtcgccac cgacgacccc gagaccaacc
     1201 tgaagaccgc cgagatggtg cgccggctgt acccgcacgt gaagatcatc gcccgcgcgc
     1261 gcaaccgcca gcacgtgcac aagctgtggg acctcaacgc gcaagccgtg cgcgagacct
     1321 tccactccag cctggaaatg agccgccagg tgctgcgcgg cctgggcctg agcgaggagc
     1381 aggccgccgc gcgcctgcgc cgcttccagc gccacgacga ggaggtactg gaggcccagc
     1441 ataaggtcta cgacaaccag gcggcggtgc agcagaccgc ccgcgaggcc cgtgcggagc
     1501 tggcgcggct gttcagcagc gacgacagcg aggagcgccg cccgaactga gcgcggggcg
     1561 gcggtacttt tcgacgggca aaaaaagcgg cccatcgtca atcgacgtgg gccgcaaagc
     1621 actactggtc gtgcgtggtg ccccgccacc cgccgatgag ggagggctgg ggcgggacgg
     1681 aacgcgcggc cggacgaccg gccgaccgcg cgtgggtatt actgggtggc gtcctggtat
     1741 tcctgctcgg cttcgtcgaa gcgcttgttc atggcggcgg acggcgcgtt gccgatgcgg
     1801 ctgaacacca cgatggccag ggtggcgagg atgaagcccg ggatgatttc gtacaggccc
     1861 agaccgatcc agttcttcca caccaccacg gtcacggcac cgacgatcat gccggccagg
     1921 gcgccgttgc gggtcatgcc cttccacagc acggagagga tcaccaccgg accgaaggcg
     1981 gcaccgaagc cggcccaggc gtaggacacc aggcccagta cacggt
//
LOCUS       DATIHC010000724         1630 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17347, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000724 DATIHC010000000
VERSION     DATIHC010000724.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1630)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1630)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1630
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17347"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..426
                     /locus_tag="VLF16_11960"
     CDS             <1..426
                     /locus_tag="VLF16_11960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011062575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSX71634.1"
                     /translation="VAAAQFSARGRGAIINLASVVALAPEMFNAVYSASKAYVLSLTQ
                     TLNGELAGKGVQVQAVLPGVTRTEIWGRSGLDESKLPPEMIMEVDEMVDAALAGFDQG
                     ELITIPSLPEVADWQAFVAARGALGPNLSRNQAAPRYKR"
     gene            complement(490..1050)
                     /locus_tag="VLF16_11965"
     CDS             complement(490..1050)
                     /locus_tag="VLF16_11965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HSX71635.1"
                     /translation="MRYPEDHKAKTHQRIIEEAALRFRRDGVLATGLQPLMKALGLTH
                     GGFYAHFKSKDDLVEQALQQSADQLEEGLKDLEQAPQPLQTLIKRYLSAAHCESPGTG
                     CPLPTMSAELGQRGQPSEVTDRIVRGRLEMIASQLSGEHAEQQSALILSAMVGALVLS
                     RSVNDPKLAELLRVGTRNLLLEQTAD"
     gene            complement(1182..>1630)
                     /locus_tag="VLF16_11970"
     CDS             complement(1182..>1630)
                     /locus_tag="VLF16_11970"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006635 - fatty acid beta-oxidation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HSX71636.1"
                     /translation="TSSPLTDGSAAVLVCTEEFARSRGLDILARVKAVAVGGCAPEIM
                     GMGPVVATRKVLERASLSIADIDLVEINEAFASQSIACVRELDLDMARVNLDGGALAL
                     GHPLGATGARITGKAASLLKRTGGRYAIATQCIAGGQGVATLLEAV"
BASE COUNT          248 a          529 c          584 g          269 t
ORIGIN      
        1 gtcgccgccg cgcagttctc tgcccgcggc cgcggcgcca tcatcaacct cgcttcggtg
       61 gtggcgctgg cgccggagat gttcaacgcc gtgtacagcg cctccaaggc ctacgtgctg
      121 agcctgaccc agactctgaa cggcgagctg gccggcaagg gcgtgcaggt ccaggccgtg
      181 ctgccgggcg tgacccgcac cgagatctgg gggcgcagcg gcttggacga aagcaagctg
      241 ccgccggaga tgatcatgga ggtcgacgag atggtcgacg cggcgttggc cggtttcgac
      301 cagggcgagc tgatcaccat cccgtcgctg ccggaggttg ccgactggca ggccttcgtc
      361 gccgcccgcg gcgcgctggg tccgaacctg tcgcgtaacc aggcggcgcc gcgctacaag
      421 cgttgaggcc gtaaaacaaa agcccccgag ggaaaccgcg ggggcttttt tgtgctccgc
      481 agatgcggct cagtccgccg tctgctccag cagcagattg cgcgtaccga cccgcagcag
      541 ttccgccagc ttcggatcgt tgacgctgcg cgacaacacc agagcgccga ccatggccga
      601 gaggatcagc gcactctgct gctcggcgtg ctcaccggaa agctggctgg cgatcatctc
      661 caggcgcccg cgcacgatgc ggtcggtgac ttcgctcggc tggccgcgct ggcccagctc
      721 ggcagacatg gtcggaagcg ggcaaccggt cccgggcgac tcgcagtggg ccgcggagag
      781 gtagcgcttg atcagcgtct gcagcggctg cggagcctgt tcgagatcct tgaggccttc
      841 ctcgagctgg tcggcgctct gctgcagggc ctgctcgacc aggtcgtcct tggacttgaa
      901 atgggcatag aagccaccgt gggtcaggcc cagggccttc atcaaaggtt gcaggccggt
      961 cgccagcacg ccgtcgcggc gaaagcgcag ggcggcttcc tcgatgatgc gttgatgggt
     1021 cttggctttg tggtcttcgg gatagcgcat gagtcagtcc ccggcaggat tggaatgctg
     1081 actttcatgt tacaccctcg agtgcgggct cgggcgtgca gacacgtggg gagcgtcgcc
     1141 aaaggacgtg gccgcgcggg ccacgtcctg ttgctgtgcc gttagacggc ttcgagcagg
     1201 gtggccacgc cctggccgcc ggcgatgcat tgggtggcga tggcgtagcg gccgccggtg
     1261 cgcttgagca gcgacgcggc tttgccggtg atgcgcgcgc cggtagcacc cagcgggtgg
     1321 ccaagggcga gggcgccgcc gtccaggttg acccgtgcca tgtccaggtc cagctcgcgc
     1381 acgcaggcga tcgactggct ggcgaaggcc tcgttgatct cgaccaggtc gatgtcggca
     1441 atgctcaggc tggcacgctc cagcaccttg cgggtcgcca ccaccgggcc catgcccatg
     1501 atctccggcg cgcaaccgcc gacggcgacg gccttcaccc gtgccaggat gtccagaccg
     1561 cggctacggg cgaactcctc cgtgcagacg agcacggcgg cgctgccgtc ggtgaggggc
     1621 gaggaggtgg
//
LOCUS       DATIHC010000725         4502 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_43977, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000725 DATIHC010000000
VERSION     DATIHC010000725.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4502
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43977"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1564
                     /locus_tag="VLF16_11975"
     CDS             <1..1564
                     /locus_tag="VLF16_11975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009622931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0015343 - siderophore-iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HSX71637.1"
                     /translation="LTESRNLRGRLVTAYQNQNSFRDVAENERGLFYGVLEADLTDNT
                     TLTLGASNQNDNYNGNGWTGLPVGFDGRDLHLSRSTSLANDWEYWDRDTTSAFIELEH
                     LLDHGWKLNLSAQRKWSSLDMLGTYLSANTTTQTINQMVGTGEYNERQNSFDLYASGP
                     FELLGREHELVLGASRRTAVFEGDVATNRLLASNINVYDWDSGAIAKPAKASLYDWLN
                     TDTTQDGVYATTRLSLADPLMLILGGRLDWYELDSVYPYLNRPTPPTLKVTRNVTRYA
                     GLIYDLDKHHSVYVSYTDIFKPQNYFDTSGSPIEPITGKNYEAGIKGEYFDGALNASL
                     AIFQIDQENRAKRMDSQVGCPSFPTTTCYEASGKVRSKGIELEVQGALTPNWQVAAGY
                     TFAETKYVKDANAANEGRLFDTDIPRHLFKASTTYNLPGELNRWRVGGSLYHQNTIYN
                     KGTGYYIEQEAYSLVDLMLGFKPTDQLDVRLNLNNVFDKTYYNVISSSVTTPSSVYGE
                     PRNLTMSMKYDF"
     gene            complement(1816..2712)
                     /locus_tag="VLF16_11980"
     CDS             complement(1816..2712)
                     /locus_tag="VLF16_11980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003242031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX71638.1"
                     /translation="MSRELPPLNALRAFEAAARLLSISQAAAELHVTHGAVSRQIRVL
                     EEQLGVALFDKDGRGVKLTDAGRRLRDVSSEAFERLREVCTELRQQDSERPFVLGCPG
                     SLLARWFIPRLDRLQKDLPELRLQLSTSQGELDPRSPEVDATLLFAEPPWPADMQVYE
                     LGVERIGPVLSPRYARSAELAGQSPAALLGEPLLHTASRPQAWPQWAEAQGLDAQRLQ
                     RGQGFEHLYYLLEAAASGLGVAIAPQALVADDLAAGRLIAPWGFVETDARLALWVPSR
                     RGGRRAQRLADWLAAELQGWRR"
     gene            2850..4061
                     /gene="trpB"
                     /locus_tag="VLF16_11985"
     CDS             2850..4061
                     /gene="trpB"
                     /locus_tag="VLF16_11985"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019341442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HSX71639.1"
                     /translation="MTSLRTGPDATGLFGHFGGQYVAETLMPLIHDLAAEYEKAKADP
                     EFAKELAYFQRDYVGRPSPLYFAERLTEHCGGAKIYLKREELNHTGAHKINNCIGQIL
                     LAKRMGKKRIIAETGAGMHGVATATVAARFGMECVIFMGTTDIDRQQANVFRMKLLGA
                     TVIPVTAGTGTLKDAMNEALRDWVTNVHNTFYLIGTVAGPHPYPAMVRDFQAVIGKET
                     RDQLQEKEGRLPDSLVACIGGGSNAMGLFHPFLDDQSVQIVGVEAAGHGIETGKHAAS
                     LNGGVPGVLHGNRTFLLQDDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGRVEYTSIT
                     DDEALAAFHQCCRLEGIIPALESSHALAEAFKRAPKLPKDHLMVINLSGRGDKDMQTV
                     MHHYDEQEEHI"
     gene            4058..>4502
                     /gene="trpA"
                     /locus_tag="VLF16_11990"
     CDS             4058..>4502
                     /gene="trpA"
                     /locus_tag="VLF16_11990"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HSX71640.1"
                     /translation="MSRLQTRFAELKQQNRAALVTFVTGGDPDYDTSLAILKGLPQAG
                     ADVIELGMPFTDPMADGPSIQLANIRALGAKQTLAKTLQMVREFRQGEQNTPLVLMGY
                     FNPIHYYGVDKFVADAKEAGVDGLIVVDLPPEHNADLCDPAQAAGI"
BASE COUNT          893 a         1570 c         1360 g          679 t
ORIGIN      
        1 gctgaccgag agccgcaacc tgcgcggccg cctggtgacg gcctaccaga accagaacag
       61 ttttcgcgac gtcgccgaga acgagcgcgg cctgttctat ggtgtcctcg aagccgacct
      121 gaccgacaac accacactga ccctgggcgc ctcgaaccag aacgataatt acaacggcaa
      181 tggctggacc ggcctgccgg tcggcttcga tgggcgcgat ctgcacctgt cgcgctcgac
      241 gtctctggcc aacgattggg aatactggga tagggacact acttcagcct tcatcgaact
      301 cgaacatctg ctggatcacg gctggaagct caatctgtcg gcgcaacgca aatggtcatc
      361 gctggacatg ctcggcacct acctgagcgc caataccacg acccagacga tcaaccagat
      421 ggtcggcacc ggtgaataca acgaacggca gaacagcttc gacctgtatg ccagcgggcc
      481 tttcgaactg ctgggccgtg agcatgagct ggtgctcggc gccagccgcc gcacagcggt
      541 gttcgagggc gacgtggcaa cgaaccgcct gctggccagc aacatcaatg tgtacgactg
      601 ggactcgggt gccatcgcca aaccggccaa agccagcctc tatgactggc tgaacaccga
      661 caccacccag gatggcgtct acgccacgac ccggttgagc ctggctgatc ccctcatgct
      721 gatcctcggc ggtcgtctgg actggtacga gctggacagc gtctacccgt acctcaaccg
      781 gccgacgcca ccgacgctga aggtcacccg caacgtcact cgctacgccg ggctcatcta
      841 cgacctggac aagcaccact ccgtctatgt cagctacacc gacatcttca aaccgcagaa
      901 ctacttcgat acgtccggca gcccgatcga gcccatcacc ggcaagaact acgaggcagg
      961 aatcaagggt gagtacttcg acggcgcgct gaacgcctcg ctggcgatct tccagatcga
     1021 ccaggagaac cgtgccaagc gaatggacag ccaggtgggt tgccccagct tcccgacaac
     1081 cacctgctac gaagcctcgg gaaaagtgcg cagcaagggc atcgaactgg aggtgcaagg
     1141 cgccctgacg ccaaactggc aggtcgccgc cggctacacc ttcgctgaaa ccaaatacgt
     1201 gaaggacgcg aacgccgcca acgaaggcag gctgttcgac accgacatcc cacgccatct
     1261 gttcaaggcc tcgaccacct acaacctgcc gggtgagctg aatcgctggc gcgtcggcgg
     1321 ctcgctgtac caccagaaca ccatctacaa caaaggcact ggctactaca tcgagcagga
     1381 ggcctattca ctggtcgacc tgatgctcgg cttcaagccg acggaccagc tcgatgtgcg
     1441 gctcaacctg aacaacgtgt tcgacaagac ctactacaac gtcatcagct catcggtgac
     1501 cacgcctagc agcgtctatg gcgagccacg caacctgacg atgtcgatga aatacgactt
     1561 ctgaaagcca ttccgatagc gagtaggtgg gaggaccgcg aagcgtcttc caccaacgcg
     1621 gaaccatcac gggtaacggt ggatatgctg cgcgctaccc acctcctatg cttccctgca
     1681 gcccaattgg ggtcctagaa tcgaggcttg cgagcagtgc gaccggtgga ggaacgccgc
     1741 gccgtccctt agcaaaggct gcatctacag atgaagacgg acgggcgccg gaaaaatcgc
     1801 tgggtcttta cgaccttatc tgcgccagcc ctgcaactcg gccgccagcc agtcggccag
     1861 ccgctgtgca cggcgcccgc cacgccggct cggcacccac agggccaggc gcgcatccgt
     1921 ctcgacgaag ccccaagggg cgatcaggcg gccggcggcg aggtcgtcgg ccaccagcgc
     1981 ctgtggcgcg atggccacgc cgaggccgct ggcggcggct tccagcaggt agtagaggtg
     2041 ctcgaagccc tggccgcgct gcaggcgttg cgcatccagg ccctgggcct cggcccattg
     2101 cggccaggcc tggggccgcg aggcggtgtg cagcagcggc tcgccgagca gcgcggcggg
     2161 cgattggccg gccagctcgg cgctgcgcgc ataacgcggg ctgagcaccg ggccgatgcg
     2221 ctccacgccc agctcgtaca cctgcatgtc cgccggccac ggcggctcgg cgaacagcag
     2281 ggtggcgtcg acctccgggc tgcgcgggtc cagctcgccc tggctggtgg acagctgcag
     2341 gcgcagctcc ggcaggtcct tctgcaggcg atccagacgc gggatgaacc agcgcgccag
     2401 caggctgccg gggcagccga gcacgaaggg acgctcgctg tcctgctggc gcagctcggt
     2461 gcacacctcg cgcagtcgct cgaaggcctc gctgctgaca tcgcgcaggc ggcggcctgc
     2521 atcggtgagt ttcacgccac ggccgtcctt gtcgaacagg gccacgccga gctgttcctc
     2581 cagcacacga atctgccggc tcaccgcccc gtgggtcaca tgtagctcgg ccgcggcctg
     2641 gctgatgctg agcaggcggg cagcggcctc gaaggcgcgc agagcattca gcgggggtag
     2701 ttctcggctc attgattcgt gagtttttct gacgtgtcag ggcaatctaa tcgcttttcc
     2761 ccggatcggc cagggttaga atggcgccat cgctcacgct ccctcgatcc ggctttcgcg
     2821 gatcagggca gcaagaacag gagaacacca tgacttccct gcgcaccggc ccggacgcca
     2881 ccggcctgtt cggccacttc ggcgggcagt acgtcgccga gaccctgatg ccgctgatcc
     2941 acgacctcgc tgcggaatac gagaaggcca aggccgaccc ggaattcgcc aaggagctgg
     3001 cctacttcca gcgcgactat gtcggccgtc cgagcccgct gtacttcgcc gagcgcctga
     3061 ccgagcactg cggcggcgcc aagatctacc tcaagcgtga ggagctgaat cacaccggcg
     3121 cgcacaagat caacaactgc atcggccaga tcctgctggc caagcgcatg ggcaagaagc
     3181 gcatcatcgc cgagaccggc gccggcatgc acggcgtggc caccgccacc gtggccgcac
     3241 ggttcggcat ggaatgcgtg atcttcatgg gcaccaccga catcgatcgc cagcaggcca
     3301 acgtgttccg catgaagctg ctgggcgcca ccgtgatccc ggttaccgcc ggcaccggca
     3361 ccctcaagga tgcgatgaac gaagcactgc gcgactgggt gaccaacgtg cacaacacct
     3421 tctacctgat cggcaccgtc gccggcccgc acccgtaccc ggccatggtc cgcgacttcc
     3481 aggccgtgat cggcaaggag acccgcgacc agttgcagga gaaggaaggc cgtctgcccg
     3541 acagcctggt cgcctgcatc ggtggcggct ccaacgccat gggcctgttc cacccgttcc
     3601 tcgatgacca gtcggtgcag atcgtcggcg tagaagccgc cggccacggc atcgagaccg
     3661 gcaaacacgc cgccagcctc aacggcggcg taccgggcgt gctgcacggc aaccgcacct
     3721 tcctgctgca ggacgacgac ggccagatca tcgacgccca ttcgatctcc gccggcctcg
     3781 actacccggg catcggcccc gaacacgcct ggctgcacga catcggccgc gtcgagtaca
     3841 cctcgatcac cgatgacgag gccctggccg ccttccacca gtgctgccgc ctggaaggca
     3901 tcatcccggc cctggagagc tcccacgccc tggccgaagc cttcaagcgc gcgccgaagc
     3961 tgcccaagga ccacctgatg gtgatcaacc tgtccggtcg tggcgacaag gacatgcaga
     4021 ccgtcatgca ccactacgac gaacaggaag aacacatatg agccgcctgc agacgcgctt
     4081 cgccgagctg aaacaacaga accgcgccgc cctggtcacc ttcgtcaccg gcggcgaccc
     4141 ggactatgac acctcgctgg ccatcctcaa gggcctgccg caggccggtg ccgacgtgat
     4201 cgagctgggc atgcccttca ccgacccgat ggccgacggc ccgtcgatcc agctggccaa
     4261 catccgcgcc cttggcgcca agcagaccct ggccaagacc ctgcagatgg tccgcgaatt
     4321 ccgccagggc gagcagaaca ccccgctggt gctgatgggc tacttcaacc ccatccacta
     4381 ctacggcgtg gacaagttcg tcgccgacgc caaggaagcc ggcgtggacg gcctgatcgt
     4441 ggtcgacctg ccaccggagc acaacgccga cctgtgcgac ccggcccagg ccgccggcat
     4501 cg
//
LOCUS       DATIHC010000726         1936 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21928, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000726 DATIHC010000000
VERSION     DATIHC010000726.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1936
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21928"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1936)
                     /locus_tag="VLF16_11995"
     CDS             complement(<1..>1936)
                     /locus_tag="VLF16_11995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016500594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HSX71641.1"
                     /translation="PDSYDGSPTGVEQLRLNIARSGIVGSLVGNNFRSSMIFVPLLEK
                     DPVSGQAIDYHTFSKVLEDKLRARYEGQGEGAIRVRIIGFAKLIGDLLDGLLQVMAYF
                     AAAAAIATAIIYAYTRCVRSTVLVVCCSLIAVVWQLGLVALFGYALDPFSILVPFLVF
                     AIGVSHGAQKMNGIMQDVGRGTHQLVAARYTFRRLFLAGLTALLADAVGFAVLMLIDI
                     PVIQDLAVTASIGVAVLIFTNLVLLPVLLSYLGVSGRAAARSLRHEREDERGRGLCAL
                     WGGLDRFTERRWASVTLVVAAILAVAGFAVSLQLKIGDLDPGAPELRADSRYNLDNAY
                     ITANYSLSSDLFAVMLKTPKEGCLKYESLVEADRLGWLLQQQSGVQTTVSLVNAVRQI
                     TAGSYEGNPKWLTIARNQNVLNYGAQQASVNNPELFNTDCSMMPVVAYLADHKAETLD
                     HMVRVAEEFARQHSTAERQFLLVAGSAGIEAATNIVVREANRIMLLYVYAAVILLCFV
                     TFRSWRAVLVAVLPLMLTSILCEALMVWLGMGVKVATLPVIALGVGIGVDYALYLLSV
                     QLAQQRAGVPLAMAYRNAVAFTGKVVALVGVTLAAGVVTWAWSPIKFQADMGILLTFM
                     FLWNMIGALVLIPALSHFLLR"
BASE COUNT          354 a          643 c          655 g          284 t
ORIGIN      
        1 cgcagcagga agtgcgacag cgccgggatc agcaccagtg caccgatcat gttccacagg
       61 aacatgaagg tcagcaggat gcccatgtcg gcctggaact tgatcggcga ccaagcccag
      121 gtgaccaccc cggcggccag ggtgacaccg accagggcaa ctaccttgcc ggtgaaggcc
      181 accgcgttgc ggtaggccat ggccagcggt accccggcgc gctgctgggc cagctgcacg
      241 ctgagcagat acagggcgta atcgacgccg atgccgacgc cgagggcgat caccggcagc
      301 gtcgccacct tcacgcccat gcccagccag accatcagcg cctcgcagag gatcgaggtg
      361 agcatcagcg gcagtaccgc caccagcacc gcgcgccagc tgcggaaggt cacgaagcac
      421 agcaggatca ccgcggcata gacatacagc agcatgatgc ggttggcctc gcgcaccacg
      481 atgttggtgg cggcctcgat gccggcgctg ccggccacca gcaggaactg gcgctcggcg
      541 gtgctgtgct ggcgggcgaa ttcctctgcg accctcacca tgtggtcgag ggtctcggcc
      601 ttgtggtcgg ccaggtaggc caccaccggc atcatcgagc agtcggtgtt gaacagctcc
      661 gggttgttca ccgaggcctg ctgggcgccg tagttcagca cgttctggtt gcgtgcgatg
      721 gtcagccact tggggttgcc ctcgtacgag ccggcggtga tctggcgcac cgcgttgacc
      781 agcgacaccg tggtctgcac cccgctctgc tgttgcagca gccagcccag acggtcggcc
      841 tcgaccaggc tctcgtactt caggcagccc tctttcggcg tcttcagcat caccgcgaac
      901 aggtcgctgg acagcgagta gttggcggtg atgtaggcgt tgtccaggtt gtagcgcgaa
      961 tcggcgcgca gctcgggcgc gccgggatca aggtcgccga tcttcagctg caggctgacg
     1021 gcgaaaccgg ccactgccag gatcgccgcc accaccaggg tgacgctcgc ccagcggcgt
     1081 tcggtgaaac ggtcgagccc accccacagc gcacacaggc cgcgaccgcg ctcgtcctcg
     1141 cgctcgtggc gcaggctgcg cgcggcggca cgcccgctca cgcccaggta cgacagcagc
     1201 accggcagca gcaccaggtt ggtgaagatc agcaccgcca cgccgatgct ggcggtgacg
     1261 gccaggtcct ggatcaccgg gatgtcgatc agcatcagca cggcgaagcc cacggcgtcg
     1321 gccagcagcg cggtgaggcc ggcgaggaac aggcggcgga aggtgtagcg cgcggccacc
     1381 agctgatggg tgccgcggcc gacgtcctgc atgatgccgt tcatcttctg cgccccgtgg
     1441 gacacgccga tggcgaacac caggaacggc accagaatgg agaacgggtc cagcgcatag
     1501 ccgaacagcg ccacgagccc aagctgccaa accacggcga tcagcgaaca gcacaccacc
     1561 agcacggtgc tgcgcacgca gcgggtgtag gcatagatga tggcggtggc gatggccgcc
     1621 gccgcggcga aataggccat gacctgcagc aggccgtcga gcaggtcgcc gatcagcttg
     1681 gcgaagccga tgatgcggac cctgatggcg ccctcgccct gcccctcgta gcgggccctg
     1741 agcttgtctt cgagcacttt ggagaacgtg tgatagtcga tggcctggcc gctcaccggg
     1801 tccttctcca gcagcggcac gaagatcatg ctggaacgga agttgttgcc caccaggctg
     1861 ccgacgatgc ccgagcgggc gatgttcagg cgcagttgct cgacgccggt cggtgagccg
     1921 tcgtaggagt cgggca
//
LOCUS       DATIHC010000727         3353 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_20770, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000727 DATIHC010000000
VERSION     DATIHC010000727.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3353)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3353)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3353
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20770"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2360)
                     /gene="gcvP"
                     /locus_tag="VLF16_12000"
     CDS             complement(<1..2360)
                     /gene="gcvP"
                     /locus_tag="VLF16_12000"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase"
                     /protein_id="HSX71642.1"
                     /translation="MSTPRLDQLQQPDAFLRRHLGPDAREEQAMLDALGLSNRDELIV
                     QTVPPAIRLNRELDLPAALDEQGALAKLKGYAEQNQLWTSLIGMGYHGTITPTVILRN
                     LLENPGWYTAYTPYQPEIAQGRLESLLNFQQLTIDLTGLDLASASLLDEATAAGEAMA
                     LAKRVAKSKSNLFFVDENCHPQIISVVQTRAEGFGIEVQVGALDELAGLEVFGALLQY
                     PDTHGEIRDIKPLIEQLHAQNALACVAADLLSLLLLTPPGEFGADVVFGSAQRFGVPM
                     GYGGPHAAFFATRDAFKRAMPGRIIGVSKDARGNTALRMALQTREQHIRREKANSNIC
                     TSQVLLANMASCYAVYHGPQGLKRIAQRVHRLTAVLAAGLAQKGVQRDNQFFFDTLTL
                     DVGGMQTAIIESAKAARINLRILGRGKLGVSLDETCSEQTVEQLLSIFLGADHGLSIA
                     ELDAGTLPEGIPAALQRTSGYLSHPVFNSHHSETDMLRYLKRLENKDLALNQAMIPLG
                     SCTMKLNATSEMIPVTWPEFGALHPFVPADQAVGYKLMIDELEAWLRAITGFDAICMQ
                     PNSGAQGEYAGLLAIRKYHESRDEGHRDICLIPASAHGTNPASAQMLNMRVVVVECDA
                     AGNVDMDDLKARAAEAGDKLSCLMITYPSTHGVYEEGIREICEVVHSFGGQVYMDGAN
                     LNAQVGLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVEL
                     QGPNPQNTAVSAAPWGSASILPISMMYIDMMGGEGLTLATKVAILNA"
     gene            complement(2515..2904)
                     /gene="gcvH"
                     /locus_tag="VLF16_12005"
     CDS             complement(2515..2904)
                     /gene="gcvH"
                     /locus_tag="VLF16_12005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013984409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HSX71643.1"
                     /translation="MSNIPADLRYVASHEWIRLEADGSVTVGITDHAQEALGDVVYVE
                     LPEVGKQLANGQEAGVVESVKAASDIYAPIGGTVLAVNEALADAPDQVNGEPYEAWFF
                     KLQPSDPAELEGLLDAAGYQAVCSADA"
     gene            complement(2988..>3353)
                     /locus_tag="VLF16_12010"
     CDS             complement(2988..>3353)
                     /locus_tag="VLF16_12010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage T C-terminal barrel
                     domain-containing protein"
                     /protein_id="HSX71644.1"
                     /translation="DEDTSPLAANMGWTIAWEPAERQFVGRSALETQRAAGDQPKLVG
                     LVLEERGVLRAHQVVRVEGLGEGEITSGSFSPTLNKSIALARVPAATGDRAEVEIRGK
                     WYPVRVVQANFVRNGKAVI"
BASE COUNT          472 a         1057 c         1245 g          579 t
ORIGIN      
        1 gcattgagga ttgcgacctt cgtggcgagc gtgagtccct cgccgcccat catgtcgatg
       61 tacatcatcg agatgggaag gatgctcgcg ctgccccagg gcgcggcgct gaccgcggtg
      121 ttctgcgggt tcgggccctg cagttcgacc accgggtggt tggccacgaa cggcgccagg
      181 tgcgcgcgca cgccgatcgg gcccatgccc gggccgccac cgccgtgcgg gatgcagaag
      241 gtcttgtgca ggttcatgtg cgacacgtcc gctccgatgt cggccgggcg ggccaggccg
      301 acctgggcgt tgaggttggc accgtccatg tacacctggc cgccgaagct gtggacgacc
      361 tcgcagatct cgcggatgcc ttcctcgtac acgccgtggg tcgacgggta ggtgatcatc
      421 aggcaggaca gcttgtcgcc ggcctcggcc gcgcgggcct tgaggtcgtc catgtcgacg
      481 ttgccggcgg cgtcgcactc caccaccacc acgcgcatgt tgagcatctg cgccgaggcc
      541 gggttggtgc cgtgggccga ggccgggatc aggcagatgt cgcggtgccc ttcgtcacgg
      601 ctctcgtggt acttgcggat ggccagcagg ccggcgtact cgccctgggc gccggagttg
      661 ggctgcatgc agatggcgtc gaagccggtg atggcgcgca gccaggcctc cagctcgtcg
      721 atcatcagct tgtagccgac ggcctggtcg gccggcacga aggggtgcag ggcgccgaat
      781 tccggccagg tgaccgggat catctcgctg gtggcgttga gcttcatggt gcaggaaccg
      841 agcgggatca tggcctggtt cagggccagg tccttgttct ccaggcgctt gaggtagcgc
      901 agcatgtcgg tttcgctgtg gtggctgttg aacaccgggt ggctcaggta gccggaggta
      961 cgctgcagcg cggccgggat gccttctggc agggtgccgg cgtccagctc ggcgatggac
     1021 aggccgtggt cggcgccgag gaagatgctc agcagctgct cgacggtctg ctcagagcag
     1081 gtctcgtcca ggctcacgcc cagcttgccg cggccgagga tgcgcaggtt gatgcgcgcg
     1141 gccttggccg actcgatgat ggcggtctgc atgccgccga catccagggt cagggtgtcg
     1201 aagaagaact ggttgtcgcg ctggacgccc ttctgcgcaa ggccggcggc cagcacggcg
     1261 gtcaggcgat gcacgcgctg ggcgatgcgc ttgaggccct gcgggccgtg gtacacggcg
     1321 tagcagctgg ccatgttggc cagcagcacc tgcgaggtgc agatgttgga gttggccttc
     1381 tcgcggcgga tgtgctgctc gcgggtctgc agggccatgc gcagcgcggt gttgccgcgg
     1441 gcgtccttgg acacgccgat gatgcggccg ggcatggcgc gcttgaaggc gtcgcgggtg
     1501 gcgaagaagg ccgcgtgcgg gccgccgtag cccatcggta cgccgaagcg ttgggccgag
     1561 ccgaacacca cgtcggcgcc gaattcgccg ggcggggtca gcagcagcag gctgagcagg
     1621 tcggcggcga cgcaggccag ggcgttctgc gcgtgcagct gctcgatcag cggcttgatg
     1681 tcgcggattt caccgtgggt gtccgggtac tgcagcaggg cgccgaacac ttccaggccg
     1741 gccagctcgt ccagcgcgcc gacctggacc tcgatgccga agccttcggc acgggtctgc
     1801 accacggaga tgatctgcgg gtggcagttc tcgtcgacga agaacaggtt gctcttgctc
     1861 ttcgccacgc gcttggccag ggccatggcc tcgccggcgg cggtggcttc gtcgagcagc
     1921 gaggcgctgg ccaggtcgag gccggtcagg tcgatggtca gctgctggaa gttcagcagc
     1981 gactccaggc ggccctgggc gatttccggc tggtaagggg tgtaggcggt gtaccagccc
     2041 gggttctcca gcaggttacg caggatcacg gtgggggtga tggtgccgtg gtagcccatg
     2101 ccgatcaggc tggtccacag ctggttctgc tcggcgtagc ccttgagctt ggccagggcg
     2161 ccctgctcgt ccagcgcggc gggcagatcc agctcgcggt tgaggcggat ggccggcggc
     2221 acggtctgca cgatcagctc gtcgcggttg ctcagcccga gggcgtcgag catggcctgc
     2281 tcctcgcggg catcggggcc gaggtggcga cggaggaagg catcgggctg ttgcagttga
     2341 tcgagacggg gcgtggacat gacggggctc tcggaaaaaa tgacagagcc tcgacggatc
     2401 gaggctcgac agcggaattc gtgtttctcg gtggcgggcc gcgtgctaga cgcggccact
     2461 cctctcaaac cggtttacga tcgcgcgcca ggcgcgcaga tcgcagatcg gttcttaggc
     2521 gtcggccgag cagacggcct ggtagccggc ggcgtcgagc aggccttcca gctcggccgg
     2581 atcgctcggc tgcagcttga agaaccaggc ctcgtagggc tcgccgttga cctgatccgg
     2641 cgcatcggcc agggcctcgt tgaccgccag cacggtgccg ccgatcgggg cgtagatgtc
     2701 ggaagcggcc ttcaccgatt ccaccacccc ggcttcctgg ccgttggcca gctgcttgcc
     2761 gacttccggc agctcgacgt agaccacgtc gcccagggct tcctgggcat ggtcggtgat
     2821 gcccacggtg accgaaccgt cggcctccag gcgaatccac tcgtggctgg cgacgtaacg
     2881 caggtcggcg gggatgttgc tcatgtcgta ttcctcgaat cgatggggcg gaacggccgc
     2941 ccggaaaatt tagcagctgg cgcgggctct gccccgcgcc gtacgaatca gatgacggcc
     3001 ttgccgttgc ggacgaagtt cgcctgcacg acgcgcaccg ggtaccactt gccgcggatc
     3061 tccacctcgg cgcggtcgcc ggtggcggcc ggcacgcggg ccagggcgat ggacttgttc
     3121 agggtcggcg agaagctgcc gctggtgatc tcgccctcgc ccaggccttc gacccgcacc
     3181 acctggtggg cgcgcagcac gccgcgctcc tccagcacca ggccgaccag cttgggctgg
     3241 tcgccggcgg cgcgctgggt ctccagggcg ctgcggccga cgaactggcg ctcggccggc
     3301 tcccaggcga tggtccagcc catgttggcg gccaggggcg aggtgtcctc gtc
//
LOCUS       DATIHC010000728         2705 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_9178, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000728 DATIHC010000000
VERSION     DATIHC010000728.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2705
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9178"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..513
                     /locus_tag="VLF16_12015"
     CDS             <1..513
                     /locus_tag="VLF16_12015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013982193.1"
                     /note="catalyzes amidations at positions B, D, E, and G on
                     adenosylcobyrinic A,C-diamide. NH(2) groups are provided
                     by glutamine, and one molecule of ATP is hydrogenolyzed
                     for each amidation; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobyric acid synthase CobQ"
                     /protein_id="HSX71645.1"
                     /translation="AIARHLRYGGKVLGICGGLQMLGTRIDDPHGLEGPAGSSAGLGL
                     LDYATVLEPEKQLRNVRGRLSLGALDVSGYEIHAGVSSGPALNMPAVRLDDGRSDGAI
                     SADGQVMATYLHGLFEQPAACAALLRWAGLREARQVDYHARRERDIERLADLVEAHLD
                     TQRLRALCGL"
     gene            595..1116
                     /gene="cobU"
                     /locus_tag="VLF16_12020"
     CDS             595..1116
                     /gene="cobU"
                     /locus_tag="VLF16_12020"
                     /EC_number="2.7.1.156"
                     /EC_number="2.7.7.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0043752 - adenosylcobinamide kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adenosylcobinamide
                     kinase/adenosylcobinamide-phosphate guanylyltransferase"
                     /protein_id="HSX71646.1"
                     /translation="MLELILGGARSGKSRLAEKLAAGSGLPVTYIATGQAWDGEMAQR
                     IAHHRSTRPTEWGLVEEPLELAGALRDNAAPGRCLLVDCLTLWLTNLLMLEDDTRLAM
                     QRDAFLEALGELPGRIILVSNETGLGVVPLGELTRRYVDEAGWLHQAVAERAERVQFC
                     VAGLPMLLKGAPL"
     gene            1113..2168
                     /gene="cobT"
                     /locus_tag="VLF16_12025"
     CDS             1113..2168
                     /gene="cobT"
                     /locus_tag="VLF16_12025"
                     /EC_number="2.4.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003252465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008939 -
                     nicotinate-nucleotide-dimethylbenzimidazole
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide--dimethylbenzimidazole
                     phosphoribosyltransferase"
                     /protein_id="HSX71647.1"
                     /translation="MTASPWWQQPCRHPDAAAEAAALTRQAQLTKPTGALGALEALAV
                     RLAALQGREKPAIRSPQLVLFAGDHGVVAEGVSAYPQAVTAQMLGNFVAGGAAVSVLA
                     RELGMPLRLVDLGTIDLALELPGVRHLRLGAGTANFAVEPAMTAEQCAAALQAGRDAV
                     QEALAAGCDLLLAGEMGIGNTSAATALACALSDLALGQLTGPGTGLDGAGVSHKQAVI
                     ERALALHGAALTDPCEALRRVGGFELAALAGAYLACAQAGIPAVIDGFICSAAALCAV
                     RLNPGVQPWLLFAHAGAEPGHAALLAELDAAPLLDLGLRLGEGSGAALALPLIKLACA
                     LHGGMATFSEALVEDKQ"
     gene            2165..>2705
                     /gene="cobC"
                     /locus_tag="VLF16_12030"
     CDS             2165..>2705
                     /gene="cobC"
                     /locus_tag="VLF16_12030"
                     /EC_number="3.1.3.73"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008001258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043755 - alpha-ribazole phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ribazole phosphatase family protein"
                     /protein_id="HSX71648.1"
                     /translation="MTLSLDMLRHGVTDAGPGFRGSSDDALTEQGRQQMQLALAGKSG
                     WDLVISSPLQRCESFARAFAEANGLPLRIEADLRELHFGEWEGRNSAEILLEDPQALG
                     EFWNDPYRFTPPGAEPVRDFAQRVLAAVERLQTELDGQRVLLITHGGVMRLLLARARN
                     LPENQLLQVEVGYGALHGLS"
BASE COUNT          372 a          971 c          960 g          402 t
ORIGIN      
        1 gccatcgccc gccacctgcg ctacggcggc aaggtgctgg gcatctgcgg cggcctgcag
       61 atgctcggca cgcgcatcga cgatccccat gggctggaag gcccggccgg cagcagcgca
      121 gggctcggcc tgctcgacta cgccactgtg ctggagccgg aaaagcagct gcgcaatgtg
      181 cgcgggcgcc tgagcctggg cgcgctggac gtcagcggct acgagattca cgcaggggtc
      241 agctccggcc cggcgctgaa catgcccgcc gtgcgcctgg acgatggccg cagcgacggc
      301 gccatcagtg ccgacggcca ggtcatggcc acctacctgc acggtctgtt cgagcagccg
      361 gccgcctgcg ccgcgctgct gcgctgggcc ggcctgcgcg aggcacgcca ggtggattac
      421 catgcgcgcc gcgaacgcga tatcgagcgc ctggccgacc tggtcgaggc gcatctggat
      481 acgcaaaggc tgcgcgcact ttgtggcctg tagggtggat gtcgtcgttt acatccacct
      541 cggcggcctc ggtggatcgt tggagcgcga tccaccctac cgaaggagag caagatgctt
      601 gaactgatcc tcggcggcgc ccgctccggc aagagccgcc tggccgagaa gctggccgca
      661 ggcagtggcc tgccggtcac ctatatcgcc accgggcagg cctgggacgg cgagatggcc
      721 cagcgcatcg cccaccatcg cagcacgcgt ccgaccgagt ggggcctggt ggaggagccc
      781 ctcgaactgg ccggcgccct gcgcgacaat gcagcccccg gtcgctgcct gctggtggac
      841 tgcctgaccc tgtggctgac caacctgctg atgctggaag acgacacccg cctggccatg
      901 cagcgcgacg ccttcctcga ggcgctgggc gaactgcccg ggcgcatcat cctggtcagc
      961 aacgagaccg gcctgggcgt ggtgccgctc ggcgagctga cccgccgcta tgtcgacgag
     1021 gccggctggc tgcaccaggc cgtggccgag cgcgccgagc gcgtgcagtt ctgcgtcgcc
     1081 ggcctgccca tgctgctcaa aggagcgccg ctatgaccgc ctccccatgg tggcagcagc
     1141 cttgccgcca tcccgacgcc gccgccgagg ccgccgccct gacgcgccag gcgcagctga
     1201 ccaagccgac cggcgccctc ggtgcactgg aggcgctggc cgtgcgcctg gccgcgctgc
     1261 aggggcgcga gaagccggcc atccgcagtc cgcagctggt gttgttcgcc ggcgatcacg
     1321 gggtggtcgc cgagggcgtg tcggcctacc cgcaggcagt gaccgcgcag atgctcggca
     1381 acttcgtcgc cggcggcgcc gccgtcagcg tgctggcccg cgagctgggc atgccgctgc
     1441 gcctggtcga cctgggtacc atcgatctgg ccctcgaact gcccggcgta cgccacctgc
     1501 gcctcggcgc cggcaccgcc aatttcgccg tcgagccggc gatgacggcc gagcagtgcg
     1561 ccgctgcact gcaagccggg cgcgacgcgg tgcaggaggc gctggccgcg ggctgcgacc
     1621 tgctgctggc cggcgagatg ggtatcggca ataccagcgc cgccacggcc ctggcctgcg
     1681 ccctgagtga tcttgcgctg ggccaattga ccggccccgg caccggcctg gacggcgccg
     1741 gtgtcagcca caaacaggcg gtgatcgagc gcgccctggc cctgcatggc gcggcgctta
     1801 ccgatccctg tgaggcgctg cgccgggtcg gcggcttcga actggcggcc ctcgccggtg
     1861 cctacctggc ctgtgctcag gcgggcattc cggccgtgat cgacggcttc atctgcagcg
     1921 cggcggccct gtgcgccgtg cgcctgaatc ccggcgtgca gccctggctg ctgttcgccc
     1981 atgccggcgc cgagccgggc cacgcagcac tgctggccga gctcgatgcc gcaccactgc
     2041 tcgacctcgg cctgcgcctg ggcgagggca gcggtgccgc gctggcgctg cccctgatca
     2101 aactggcctg cgcgctgcac ggcggcatgg ctaccttttc tgaagctctg gttgaggaca
     2161 aacaatgacc ctttccctgg atatgctgcg ccacggcgtg accgacgccg gccccggctt
     2221 tcgtggcagc agcgacgacg cgctgaccga gcagggccgc cagcagatgc agctggccct
     2281 ggccggcaag agtggctggg acctggtgat cagctcgccg ctgcagcgtt gcgagtcgtt
     2341 cgcccgtgcc tttgccgagg ccaatggatt gccgctgcgc atcgaggccg atctgcgcga
     2401 actgcacttc ggtgagtggg aagggcgcaa ctcggcggag atcctgctgg aggacccgca
     2461 ggccctcggc gagttctgga acgatcccta ccgcttcacc ccgcccggcg ccgagccggt
     2521 cagagacttc gcccagcgcg tgttggccgc cgtcgagcgc ctgcagaccg agctggacgg
     2581 ccagcgcgtg ctgctgatca cccacggcgg cgtgatgcgc ctgctgctgg cccgcgcgcg
     2641 caacctgccg gagaaccagc tgctgcaggt ggaagtgggc tatggcgcgt tgcacggcct
     2701 gagtg
//
LOCUS       DATIHC010000729         1676 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4336, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000729 DATIHC010000000
VERSION     DATIHC010000729.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1676)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1676
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4336"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1676)
                     /locus_tag="VLF16_12035"
     CDS             complement(<1..>1676)
                     /locus_tag="VLF16_12035"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSX71649.1"
                     /translation="PGEVVYSDALFVAERIDNGVRHSLKEERRYPHDLYSRERLFVDN
                     YIPVNTFAWPRAVAAEVGEFDETLSGLEDWDFLLRLAARLPFHHLQRETVQVRMRVSD
                     AAPDRRSQQAFKDYPALYRELYSRHSDLDDAQVKRQRAAKLKQLGQAPSVSPGDLVRA
                     WLAARRPNPVQRRLIDQYLESNQDGPRIGVVILDLLGDADAITRTLGSLQEEQQGYRN
                     LQVRALTVGDFAEDSALLVKIERDGYIEALNLAVAGMDSDWCVLVRAGECFTASGLLI
                     AALELIAAPQCRAIYADEIQVAANGEPQAVLRPDFNLDLLLSFPASMARHWLFRRDVF
                     IEAGGFGAEYGQALEFELVLRLIEQGGLEGLGHVSEPLVISAALQLEDNADERRAIER
                     HLNARGYAEARVEALQPGRYRLRYGHAGQPGVSIVVPALAPLAKLQRCVESILESTLD
                     VPYEILLLARDNPDEELNAWLQGLRGLGEANLRILDQRTGDTLAAAQNFAGREARGDY
                     LLFLAADTAVVQGDWLAGLLDHAQRPEVGPVGAKLLSPEGTIRHAGLILG"
BASE COUNT          256 a          596 c          561 g          263 t
ORIGIN      
        1 ggccgagaat caggccggcg tggcgaatgg tgccctcggg gctcagcagt ttggcgccga
       61 ccgggccgac ctccgggcgc tgggcgtgat cgagcagccc cgccagccag tcgccctgca
      121 ccacggcggt gtcggccgcc aggaacagca ggtagtcccc ccgtgcctcg cgcccggcga
      181 agttctgcgc cgccgccagg gtatccccgg tgcgctggtc gagtatccgc aggttggcct
      241 cgcccaatcc gcgcagcccc tgcagccagg cgttgagttc ttcgtccgga ttgtcgcggg
      301 ccagcagcag aatctcgtac ggcacgtcca gcgtgctctc cagaatgctc tccacgcagc
      361 gctgcaattt ggccaatggc gccagcgccg gcaccacgat ggaaaccccg ggctgcccgg
      421 catggccgta acgcagtcgg tagcgaccgg gttgcagggc ctcgacacgg gcctcggcat
      481 agccgcgcgc gttcaggtgg cgctcgatgg ccctgcgctc gtcggcgttg tcttccagct
      541 gcagcgctgc gctgataacc aatggctcgg acacgtgccc gagcccctcc aggccgccct
      601 gctcgatcag ccgcagtacc agttcgaact cgagcgcctg gccgtactcg gcgccgaatc
      661 cgccggcctc gatgaacaca tcgcgacgga acagccagtg ccgcgccatg ctggcgggga
      721 aactcagcag caggtccagg ttgaagtccg ggcgcagcac ggcctggggt tcgccattgg
      781 ccgccacctg gatctcgtcg gcgtagatgg cacggcattg cggcgcggca atcagctcca
      841 gcgctgcgat cagcaggccg ctggcggtga agcactcacc ggcgcgcacc agcacgcacc
      901 agtcgctgtc catgcccgcc acggccagat tgagcgcctc gatgtagcca tcgcgctcga
      961 tcttcaccag caacgcggaa tcctcggcga agtcgcccac ggtcagcgcg cgtacctgca
     1021 ggttgcggta gccctgctgt tcttcctgca gactgccgag ggtcctggtg atggcgtcgg
     1081 cgtcgcccag caggtcgagg atcaccacgc cgatgcgcgg gccgtcctga ttgctctcca
     1141 ggtactggtc gatcagcctc cgctgcaccg ggttcgggcg ccgcgcggcg agccaggcgc
     1201 gcaccaggtc gccggggctc acgctcggcg cctggcccag ctgcttgagc ttggcggcgc
     1261 gctggcgctt gacctgcgca tcgtccaggt ccgagtgccg cgaatagagc tcccggtaca
     1321 gcgccgggta atccttgaag gcctgctgcg aacggcggtc aggcgccgca tcgctcacgc
     1381 gcatgcgcac ctgaacggtt tcgcgctgca ggtgatggaa cggcaggcgc gccgccaggc
     1441 gcagcaggaa gtcccagtcc tccagccctg acaaggtctc gtcgaactcg cccacctcgg
     1501 cggccaccgc ccgcggccag gcgaaggtgt tgaccgggat gtagttgtcg acgaacaggc
     1561 gctcgcgcga atagaggtcg tgcgggtagc gccgctcctc cttgaggctg tggcgcacac
     1621 cgttgtcgat gcgctcggcg acgaacagcg catcgctgta caccacctcg cccggg
//
LOCUS       DATIHC010000730         6654 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_24258, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000730 DATIHC010000000
VERSION     DATIHC010000730.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6654
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24258"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..307)
                     /locus_tag="VLF16_12040"
     CDS             complement(<1..307)
                     /locus_tag="VLF16_12040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YihY family inner membrane protein"
                     /protein_id="HSX71650.1"
                     /translation="MRQRLVDWLEFWRFVWHRFLVDRAINSAAALTYTTLFAVVPVMT
                     VTFAILSAVPAFQGTGEQIQYFIFHNFVPSSGETVQEYLREFTAQARQLTWAGVVLLA
                     "
     gene            378..731
                     /gene="arsC"
                     /locus_tag="VLF16_12045"
     CDS             378..731
                     /gene="arsC"
                     /locus_tag="VLF16_12045"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249641.1"
                     /note="This arsenate reductase requires both glutathione
                     and glutaredoxin to convert arsenate to arsenite, after
                     which the efflux transporter formed by ArsA and ArsB can
                     extrude the arsenite from the cell, providing resistance;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0008794 - arsenate reductase
                     (glutaredoxin) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (glutaredoxin)"
                     /protein_id="HSX71651.1"
                     /translation="MTDLTLYHNPRCSKSRGALELLEARGLTPTVVRYLETPPSAEEL
                     RALLAKLGIGPRDLLRTGEDEYKALNLADASLGDERLIAAMVAHPRLIERPILVAGDR
                     AVIGRPPEKVLELLA"
     gene            728..1333
                     /gene="wrbA"
                     /locus_tag="VLF16_12050"
     CDS             728..1333
                     /gene="wrbA"
                     /locus_tag="VLF16_12050"
                     /EC_number="1.6.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013983449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003955 - NAD(P)H dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H:quinone oxidoreductase"
                     /protein_id="HSX71652.1"
                     /translation="MSAPYILVLYYSRHGATAEMARQIARGVEMAGLEARLRTVPPVS
                     SDCEASAPAIPEDGALYAELDDLRNCAGLALGSPTRFGNMAAPLKYFIDGTSSLWLTG
                     ELVGKPAGVFTSTSSLHGGQESTLLSMLLPLLHHGMLVCGLPYSEGALLDTRGGGTPY
                     GPSHHAGADGKRKLDEHEIALCRALGQRLAATAAKLETPRG"
     gene            1326..1736
                     /locus_tag="VLF16_12055"
     CDS             1326..1736
                     /locus_tag="VLF16_12055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2069 domain-containing protein"
                     /protein_id="HSX71653.1"
                     /translation="MARTPKPLPSLEWLAPRMKLSRALTLFSFFALIALLLVWNLLFA
                     DLHGARTWVVLSIQLLPLLLLAPGLLLGNARAHAWACFVVNIYFIQGVLAAIDPARAL
                     FGALETVISLSLFCSALLYVRWRFQYDRKLAGES"
     gene            1736..2407
                     /locus_tag="VLF16_12060"
     CDS             1736..2407
                     /locus_tag="VLF16_12060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HSX71654.1"
                     /translation="MRLVLLPGLNGSSRLFAPLLAHLQDLHCEIIELPQRGAQDYPSL
                     AGRLIGQLSDTPFVLLGESFSGPLAHHLALQNPSGLRGLVFAASFLQPPHPLTALASR
                     LPIPKRLLNHHRLLRLFCVGDAPDDILRLLQAEVRDLPDELVRARLKALAQLRAPQQR
                     VSTPALHLWPTRDRLVTNASAASIANGCGRLIQERIEGPHFLLQSRPQACAAAIGRFM
                     EKLSA"
     gene            complement(2408..3112)
                     /gene="hda"
                     /locus_tag="VLF16_12065"
     CDS             complement(2408..3112)
                     /gene="hda"
                     /locus_tag="VLF16_12065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0032297 - negative regulation of
                     DNA-templated DNA replication initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA regulatory inactivator Hda"
                     /protein_id="HSX71655.1"
                     /translation="MKPVQLPLGIRLRDDATFANYYPGANAAALGYVERLCEADAGWT
                     ESLIYLWGGEGVGRSHLLQAACLRFEQRGESAVYLPLSEVVEHGPELLDGLEQCELVC
                     LDELDAVAGRSDWEEALFHLFNRLRDAGRKLLLAATVSPRELSVQLPDLQSRLTLALV
                     FQLHALSDEDKLRALQLRASRRGLHLTDEVGRFILTRGERSMSALFELLERLDQASLQ
                     AQRKLTIPFLKETLGW"
     gene            complement(3109..4203)
                     /locus_tag="VLF16_12070"
     CDS             complement(3109..4203)
                     /locus_tag="VLF16_12070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003450662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HSX71656.1"
                     /translation="MTDSRRWMWLAGLFLCGWLIYLLTPILSPFLVAMLLAYMGDPLV
                     DRLERRGLSRTWGVVIVFSLFSLVLLVMLLVLIPMLGRQLVRLYELAPQGLDWAQHQA
                     LPWVQAQFGLADGFWRFDQVKQALSGHLGKTTDIVGGLLAQATASSLALLAWLGNLLL
                     IPVVAFYLLRDWDLMMAKLRNLLPRARESMVVRLVGECHEVLGAFMRGQLLVMLALAA
                     IYSIGLMVVGLELGLLIGLLAGLASIVPYMGFIVGFGAAVVAALFQYGGFELYPLIGI
                     VVVFSIGQLLEGMVLTPMLVGDRIGLHPVAVIFAILAGGQLFGFTGVLLALPVAAVIM
                     VLLRHAHDFYKLSALYGESPGDSQEPPASA"
     gene            complement(4289..5314)
                     /locus_tag="VLF16_12075"
     CDS             complement(4289..5314)
                     /locus_tag="VLF16_12075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013790612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2066 domain-containing protein"
                     /protein_id="HSX71657.1"
                     /translation="MRLSVRLLALCLPLFSLPVLGETVDDLYQVREPVTSQQPEERGA
                     ALNRALETLVLRLTGDAKAVQSPALEGVRQDPQQLVSQYVYEGDSLVVDFDPLTTENK
                     LRQAGLPMWGANRPAILTWWLNSGVEGATLIGDGQEAAAPLRQAAQHRGLPLRLPLAD
                     LQEQLVATPENLAASQPDALQPASERYGADALLAVQAREEGGQWQAEWRLWLGDSREQ
                     GKAQGADQQALADAVLLAVSERLAPRFVVKPGAAGALTLEVQGADLARYAELERLLEP
                     FAARLQRVKGDQLVWQVNASAEQLRAQLGLAGLQEVPADAAPLDAGAAPQATPAPAPA
                     NVMRFRW"
     gene            5512..6570
                     /gene="purM"
                     /locus_tag="VLF16_12080"
     CDS             5512..6570
                     /gene="purM"
                     /locus_tag="VLF16_12080"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003244303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004641 -
                     phosphoribosylformylglycinamidine cyclo-ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HSX71658.1"
                     /translation="MSKQPSISYKDAGVDIDAGEALVERIKGVAKRTARPEVMGGLGG
                     FGALCEIPAGYKQPVLVSGTDGVGTKLRLALNLNKHDSIGQDLVAMCVNDLVVCGAEP
                     LFFLDYYATGKLNVDVAATVVTGIGAGCELAGCSLVGGETAEMPGMYEGEDYDLAGFC
                     VGVVEKSEIIDGSKVVTGDALIALPSSGPHSNGYSLIRKILEVSGVDIEATELNGSKL
                     ADLLMAPTRIYVKPLLTLIKDTGAVKAMAHITGGGLLDNIPRVLPQGAQAVIDVASWT
                     RPAVFDFLQEKGNVDEHEMHRVLNCGVGMVICVAQDQVEATLASLRASGEAPWVIGQI
                     DQAAEGAELVVLNNLKAH"
     gene            6570..>6654
                     /locus_tag="VLF16_12085"
     CDS             6570..>6654
                     /locus_tag="VLF16_12085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HSX71659.1"
                     /translation="MACNVVVLISGSGSNLQALIDSIAHDGN"
BASE COUNT         1156 a         2316 c         2176 g         1006 t
ORIGIN      
        1 tcgccagcag caccacgccc gcccaggtca gctggcgcgc ctgggcggtg aactcgcgca
       61 ggtactcctg caccgtctca cccgatgacg gcacgaagtt gtggaagatg aagtactgga
      121 tctgctcgcc ggtgccctgg aaggccggca ccgccgagag gatggcgaag gtcacggtca
      181 tcaccggcac cacggcgaac agcgtggtgt aggtcagcgc ggcggcgctg ttgatggcgc
      241 gatcgacgag aaagcgatgc cacacgaagc gccagaactc caaccagtcc accagccgct
      301 gtcgcatgcc tactccttag cccgttatgc cttctagccg gctagaatag cgccctcaat
      361 cgccaatggg cactgccatg accgacctca ctctctatca caacccgcgc tgttccaaat
      421 cccgcggcgc gctggagctg ctcgaagcgc gcggcctgac tccgaccgtg gtgcgttatc
      481 tggagacccc gccgagcgcc gaagagttgc gcgcgctgct ggccaagctc ggcatcggcc
      541 cgcgcgatct gctgcgcacc ggcgaggacg agtacaaggc gctcaacctg gccgacgcca
      601 gcctcggcga cgagcgactg atcgccgcca tggtcgccca ccccaggctg atcgagcgcc
      661 ccatcctcgt cgccggcgac cgcgccgtga tcggccgccc gccggagaaa gtgctggagc
      721 tgctggcatg agtgcgccct atattctggt gctctactac agccgccacg gcgccaccgc
      781 cgagatggcc cggcagatcg cccgcggcgt cgagatggca ggcctggagg cgcgcctgcg
      841 caccgtgccg ccggtgtcca gcgactgcga ggcgagcgct ccggcgattc ccgaagacgg
      901 cgcgctctac gccgagctgg acgacctgcg caactgcgcc ggcctggcgc tgggcagtcc
      961 gacccgcttc ggcaacatgg ccgccccgct caaatacttc atcgatggca ccagcagcct
     1021 gtggctgacc ggcgaactgg tcggcaagcc ggcgggcgtg ttcacctcca cctccagcct
     1081 gcacggcggc caggagagca ccctgctgtc catgctgctg ccgctgctgc atcacggcat
     1141 gctggtctgc ggcctgccct acagtgaagg cgccttgctc gacacccgcg gcggcggcac
     1201 cccctacggc cccagccacc acgccggcgc ggacggcaaa cgcaagctcg acgaacacga
     1261 aatcgccctg tgccgcgccc tcggccagcg cctggcggcc accgccgcga aactggagac
     1321 gccccgtggc tagaacgccc aagcccctgc ccagcctcga gtggctggcg ccgcgcatga
     1381 agctcagccg cgcgctgacg ctgttcagct tcttcgcact aatcgccctg ctgctggtgt
     1441 ggaatctgct gttcgccgac ctgcacggcg cacgcacctg ggtggtgctg agcatccagc
     1501 tgttgccgct gttgctgctc gcacccggcc tgctgctggg caacgcccgc gcccacgcct
     1561 gggcgtgctt cgtggtgaac atctacttca tccagggcgt gctggccgcc atcgaccccg
     1621 cgcgcgccct gttcggcgcc ctggagacgg tgatcagtct gagcctgttc tgcagcgccc
     1681 tgctctatgt gcgctggcgt ttccagtacg accgcaagct ggcgggcgaa agctgatgcg
     1741 cctggtgctg ctgccaggtc tcaatggcag cagccggttg ttcgcgccgc tactggcgca
     1801 tctccaggat ctgcactgcg agatcatcga gctcccgcaa cgaggcgctc aggactatcc
     1861 cagtctggca ggcaggctaa taggtcagct gagcgataca ccgtttgtgt tgctcggcga
     1921 gtccttttcc ggaccactgg cccatcacct tgcgctgcag aatccgtctg gattgagggg
     1981 actcgtcttc gccgctagtt ttctacagcc gccgcatcct ctaacggcgt tagcaagccg
     2041 gctgccaata cccaagagac tgctgaatca tcaccgtctg ctgcgactgt tttgtgtcgg
     2101 cgatgcgccc gatgacattc ttcgcctgct tcaggcagag gtccgtgacc tgcctgatga
     2161 gctggtccgt gcacgcctga aagccctggc ccagctacgc gctccgcagc agagagtctc
     2221 gactcctgca ttgcacctgt ggccaaccag ggatcgcctg gtgaccaatg cctcggcagc
     2281 cagcatcgcc aacggctgtg gccgactgat tcaggaaagg atcgaggggc cgcactttct
     2341 gctgcaaagc cgaccacagg cctgcgcggc tgccatcggc agattcatgg agaaactgtc
     2401 ggcctgacta ccagcccagg gtttccttga ggaagggaat ggtcagcttg cgctgggcct
     2461 gtagcgaggc ctggtcgagg cgttcgagca gttcgaacag cgcgctcatg ctgcgctcgc
     2521 cgcgggtgag gatgaagcgg ccgacctcgt cggtcaggtg caggccgcgg cgcgaggcgc
     2581 gtagctgcag ggcgcgcagc ttgtcttcgt cggacaacgc gtggagctgg aacaccagcg
     2641 ccagggtcag gcgcgattgc aggtccggca gttgcaccga cagctcgcgc ggcgacacgg
     2701 tggcggccag cagcagcttg cgaccggcat cgcgcaggcg attgaacagg tggaacagcg
     2761 cctcttccca gtccgagcgg ccggctacgg cgtccagttc gtccaggcag accagttcgc
     2821 actgctccag gccgtcgagc aattccgggc cgtgttccac cacctccgac agcggcaggt
     2881 acaccgccga ctcgccgcgc tgctcgaagc gcaggcaggc cgcctgcagc aggtggctgc
     2941 gccccacgcc ttcgccgccc cacaggtaaa tcagactctc ggtccagccg gcgtctgcct
     3001 cgcacaggcg ctcgacatag ccaagcgccg cggcgttggc gccggggtag tagttggcga
     3061 aggtggcatc gtcacgcaga cggatgccga ggggcagctg aacaggtttc atgcactggc
     3121 cggcggttct tgcgaatcgc cgggagactc tccgtaaagg gcggaaagtt tatagaaatc
     3181 atgggcatga cgcagcagaa ccatgatcac cgccgccacc ggcagggcca acagcacgcc
     3241 ggtgaagccg aacagctggc cgccggcgag gatggcgaag atcacggcca ccgggtgcag
     3301 gccgatgcgg tcgcccacca gcatgggggt cagcaccatg ccctccagca gttggccaat
     3361 gctgaacacg acgacgatgc cgatcagcgg atagagctcg aagccgccgt actggaacag
     3421 cgcggccacc acggcggcgc cgaaaccgac gatgaagccc atgtagggca cgatgctggc
     3481 caggccggcg agcaggccga tcagcaggcc cagctcgagg ccgaccacca tcaggccgat
     3541 cgagtagatg gcggccaggg ccagcatcac cagcaactgg ccacgcatga aggcgccgag
     3601 cacctcgtgg cattcgccga ccagccgcac caccatgctt tcgcgcgcgc gcggcagcag
     3661 gttgcgcagc ttggccatca tcaggtccca gtcgcgcagc aggtagaagg ccaccacggg
     3721 aatcagcagc aggttgccca gccaggccag cagcgccagg ctggaggccg tggcctgggc
     3781 cagcaggccg ccgacgatgt cggtggtctt gccgaggtgg ccggacaacg cctgcttgac
     3841 ctgatcgaag cgccagaagc cgtcggccag accgaactgc gcctgcaccc acggcagcgc
     3901 ctggtgctgg gcccagtcca gaccctgcgg cgccagctcg tagagacgca ccagctggcg
     3961 gccgagcatg gggatcagca ccagcagcat gactagcaac accaggctga acaggctgaa
     4021 gacgatgacc acgccccagg tgcgcgacag gccgcgccgc tccaggcggt ccaccagcgg
     4081 gtcgcccatg taggccagca gcatcgccac caggaagggc gacagaatgg gggtgagcag
     4141 gtagatcagc cagccgcaca gaaacagtcc ggccaaccac atccagcgcc gcgaatcggt
     4201 catctcaggc actccgcctc tggtgatgag atcggcaagc cgccatcggg cggctgccgc
     4261 atcggtcctt gaacaacgaa ccgccggctt accagcggaa ccgcatgaca ttggctggcg
     4321 ccggcgcagg cgtggcctgg ggtgccgcac cggcatccag cggcgcggcg tcggccggta
     4381 cttcctgcag gccggccagg cccagctggg cgcgcagttg ctcggcgctg gcgttgacct
     4441 gccagaccag ctgatcgccc ttgacccgct gcagacgagc ggcgaatggc tcgagcaggc
     4501 gctccagctc ggcgtagcgg gcgagatcgg cgccctggac ttccagggtc agggcgccgg
     4561 ccgcgccggg cttgaccaca aagcgcggcg ccaggcgctc gctgaccgcc agcaacacgg
     4621 cgtcggccag ggcctgctga tcggcgccct gggccttgcc ctgctcgcgg gagtcgccga
     4681 gccacaggcg ccattcggcc tgccactgac cgccctcttc acgggcctgc acggccagca
     4741 gggcgtcggc accgtagcgc tcggaggccg gttgcagcgc atccggctgg ctggcggcga
     4801 ggttctccgg cgtggccacc agttgctcct gcaggtcggc caggggcaga cgcaacggca
     4861 ggccgcggtg ctgggcggcc tgacgcagcg gcgcggcggc ctcctggcca tcgccgatca
     4921 gggtcgcgcc ttcgacaccg ctgttcagcc accaggtcag gatcgccggg cggttggcgc
     4981 cccacatcgg caggccggcc tggcgcagtt tgttctcggt ggtcagcgga tcgaagtcca
     5041 ccaccaggct atcgccctcg tagacgtact ggctgaccag ctgctgcgga tcctggcgca
     5101 cgccctccag cgccgggctc tgcaccgcct tggcgtctcc ggtcaggcgt aacaccaggg
     5161 tctccagggc gcgattgagg gccgcgccgc gctcctccgg ctgctggctg gtgaccggct
     5221 cgcgcacctg atagaggtcg tccaccgtct cgcccagcac cggcaggctg aacaagggaa
     5281 gacaaagggc aagcaggcgg acggacaggc gcatcggtag ggtctcggct caagggaagg
     5341 tgccggcgcg gcacgcgaag ggctatacct taaacagccg cctgcccccc ggcaaccgtc
     5401 gcgcccggtg gtcgctgacg ggcaagcctg ataaaatcgc gcgccttcgc gggtcggccc
     5461 tggcgtgccg gctgccccct gcatttcccc cttttcaaag gcctgaaacc catgagcaag
     5521 caaccctcca tcagctacaa ggatgcgggt gtcgacatcg acgccggcga agccctggtc
     5581 gagcgcatca aaggcgtggc caagcgcacc gcgcgtccgg aggtcatggg tggcctgggc
     5641 ggcttcggcg ccctctgcga gatcccggcc ggctacaagc agccggtact ggtcagcggt
     5701 accgacggcg tcggcaccaa gctgcgcctg gcgctgaacc tgaacaagca cgacagcatc
     5761 ggccaggacc tggtcgccat gtgcgtcaac gacctggtcg tgtgcggtgc cgagccgctg
     5821 ttcttcctcg actactacgc caccggcaag ctcaacgtcg acgtggccgc caccgtggtc
     5881 accggcatcg gtgccggctg cgaactggcc ggctgctccc tggtcggtgg cgagaccgcc
     5941 gagatgccgg gcatgtacga aggcgaagac tacgacctgg ccggcttctg cgtcggcgtg
     6001 gtcgaaaaga gcgagatcat cgatggctcg aaagtggtca ccggcgacgc gctgatcgcc
     6061 ctgccctcct ccggcccgca ttccaacggt tactcgctga tccgcaagat cctcgaggtc
     6121 tccggcgtcg acatcgaagc caccgagctg aacggcagca agctcgccga cctgctgatg
     6181 gcgccgacgc gcatctacgt caaaccgctg ctcacgctga tcaaggacac cggcgccgtg
     6241 aaggccatgg cccacatcac tggcggcggc ctgctcgaca acattccgcg cgtgctgccg
     6301 caaggcgccc aggcggtgat cgacgtggcc agctggaccc gcccggcggt gttcgacttc
     6361 ctgcaggaaa aaggcaatgt cgacgagcac gagatgcatc gcgtactgaa ctgcggcgtc
     6421 ggcatggtca tctgcgtcgc ccaggatcag gtcgaggcca ccctcgccag cctgcgcgcc
     6481 tcgggcgaag ctccatgggt gatcggccag atcgaccagg ccgccgaagg tgccgagctg
     6541 gtcgtgctga acaacctgaa agcccactga tggcttgcaa cgtcgtcgtc ctgatctccg
     6601 ggtcgggcag caatctgcag gccctgatcg acagcatcgc ccacgacggc aatc
//
LOCUS       DATIHC010000731         3391 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37019, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000731 DATIHC010000000
VERSION     DATIHC010000731.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3391)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3391)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3391
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37019"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..422
                     /locus_tag="VLF16_12090"
     CDS             <1..422
                     /locus_tag="VLF16_12090"
                     /EC_number="2.1.3.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010483015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HSX71660.1"
                     /translation="ALEKRCPMVCFAASGGARMQEALISLMQMAKTSAVLARLREEGI
                     PFISVLTDPVYGGVSASLAMLGDVIVAEPRALIGFAGPRVIEQTVREKLPEGFQRSEF
                     LLEHGAIDMIIHRKDLRPRLGRLLAQLQHLPTPAATA"
     gene            419..1717
                     /gene="folC"
                     /locus_tag="VLF16_12095"
     CDS             419..1717
                     /gene="folC"
                     /locus_tag="VLF16_12095"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019649330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004326 - tetrahydrofolylpolyglutamate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HSX71661.1"
                     /translation="MSRSLADWLSYLEQLHPSAIDMGLERSREVARRLGLGKPAPLVI
                     TVTGTNGKGSTCAFLASLLRQQGLKVGVYSSPHLLHYNERVQFDGREARDDELCDAFA
                     AVEAGRGEISLTYFEMGTLAAFWLFERAALDAVVLEVGLGGRLDAVNLVDADLALVTS
                     IGLDHADWLGDTRESVAFEKAGILRQGKPALCGDLETPLPLLQRVAELDCPLFLRGRD
                     YDLTVAESAWHWRGLTAEGQVLELRDLPLLDLPMQNAALALQAYAALGMDWQPERLAD
                     ALRATRVAGRLDRRQLSWQGRTLNLLLDVGHNPHAADYLAARLAARPPKGRRLAVFGL
                     LADKDLPGVLAPLRLEIQGWAVTPLDCPRSRPVGELEAALRNLGADVRACSSVAEALL
                     VQCGLASEDDEILVFGSFYCVAEALEWLGQQAEAGNGSAG"
     gene            1701..2315
                     /locus_tag="VLF16_12100"
     CDS             1701..2315
                     /locus_tag="VLF16_12100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003226421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HSX71662.1"
                     /translation="MAVLDKGLKQRIVGALVLVALAVVFLPMLFSREDELRQISVDAP
                     AMPEKPVMPEVTLDPVSVPEPVAADEVPPVEPVPQTPSEPIAAPSQPAADSKAPVQAE
                     APVQQPAAAPAEQKPASGLDANNLPVSWSVQLASLSSRAGAEKLQQTLRSGGYNAYIR
                     SFDGMNRVFVGPVIERAEADRLRDQLNRQQNLKGFVVRFQPENG"
     gene            2408..2971
                     /locus_tag="VLF16_12105"
     CDS             2408..2971
                     /locus_tag="VLF16_12105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009403101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HSX71663.1"
                     /translation="MAFTWVDWAIIAVIAISSLISLRRGFFKEALSLLTWIVAGVVAW
                     MFGGALSQHLSGFVETPSMRVIAACAILFVVTLLVGALINFLIGELIRVTGLSGTDRF
                     LGMVFGAARGALLVVVLVGLVSLAPVQQDQWWQQSTLLPHFLMVADWSKNLILSLTSQ
                     WLASGITDTPELPFKDVLSQPKLPESL"
     gene            3004..>3391
                     /locus_tag="VLF16_12110"
     CDS             3004..>3391
                     /locus_tag="VLF16_12110"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251798.1"
                     /note="Catalyzes first step of the de novo purine
                     nucleotide biosynthetic pathway; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HSX71664.1"
                     /translation="MCGIVGIVGKSNVNQSLYDALTVLQHRGQDAAGIVTSHDGRLFL
                     RKDNGLVRDVFQQHHMQRLVGKVGIGHVRYPTAGSSSSAEAQPFYVNSPYGITLAHNG
                     NLTNVEQLSREIYESDLRHVNTNSDSE"
BASE COUNT          520 a         1123 c         1132 g          616 t
ORIGIN      
        1 ttgccctgga gaagcgttgc ccgatggtct gctttgccgc ttccggcggc gcgcgcatgc
       61 aggaggcgct gatctcgctg atgcagatgg ccaagaccag tgccgtgctg gcgcgcctgc
      121 gcgaggaagg cattcccttc atctccgtgc tgaccgaccc ggtctacggc ggcgtttccg
      181 ccagtctggc catgctcggt gacgtgatcg tcgccgagcc gcgcgccctg atcggcttcg
      241 ccggcccgcg ggtaatcgag cagacagtgc gcgagaagct gccggaaggc ttccagcgca
      301 gcgagttcct gctcgagcac ggcgccatcg acatgatcat ccaccgcaag gatctgcgcc
      361 cgcgcctggg tcgactgctg gcgcagctgc agcatttgcc cacccccgcg gccactgcat
      421 gagtcgatcc ctcgccgact ggctgagcta cctggagcag ctgcacccca gcgccatcga
      481 catggggctg gagcgctccc gcgaggtcgc tcgccggctc ggcctgggta agccggctcc
      541 cctggtgatc accgtcaccg gcaccaacgg caaaggctcc acctgtgcgt ttctggcatc
      601 tctgctgcgc cagcaggggc ttaaggttgg cgtctatagc tcgccgcatc ttctgcacta
      661 caacgagcgg gttcagttcg acgggcgcga ggcccgtgac gacgagctgt gcgacgcctt
      721 cgccgccgtc gaggctgggc gtggcgagat atccctgacc tatttcgaga tgggcacgct
      781 ggcggccttc tggctgttcg agcgcgccgc gctggacgcc gtggtgctgg aagtcggcct
      841 cggcgggcga ctcgatgcgg tcaatctggt cgacgccgac ctggcgctcg ttaccagtat
      901 cggtctggat catgccgact ggctcggcga cacccgcgag tcggtggcct tcgagaaggc
      961 gggcatccta cggcagggca agcccgcgct atgcggcgac ctggagacgc cgctgccgtt
     1021 gctgcagcgg gtcgccgagc tcgactgccc gctgttcctg cgtggccgcg actatgacct
     1081 gaccgtggct gagagtgcct ggcactggcg ggggctgact gccgaaggcc aggtgctgga
     1141 gctacgcgac ctgccgctgc tggatctgcc gatgcagaac gccgccctgg cgctgcaggc
     1201 ctatgccgca ttgggcatgg actggcagcc ggagcgcctg gccgatgcgc tgcgcgctac
     1261 tcgcgtggcc ggtcgcctgg atcgccgtca gctgagctgg cagggcagaa cgctgaacct
     1321 gctgctggac gtcggccaca acccccacgc cgccgattac ctggcagcgc gcctggcggc
     1381 gcgtccgccc aagggccgtc ggctggcggt gttcggcctg ctggcggaca aggacctgcc
     1441 cggggtgctg gcgccgttgc gcctggaaat ccaaggctgg gcggtgacgc ccctggattg
     1501 cccgcgctcc cgtccggtcg gcgagctgga ggccgctctg cgcaatctcg gcgccgacgt
     1561 gcgagcctgc tccagcgtag cggaggcatt gctggtacag tgtggcctgg cgagcgagga
     1621 cgacgagatc ctcgtgttcg gatctttcta ttgcgtggcc gaggccctgg agtggctcgg
     1681 ccaacaggcg gaggcgggca atggcagtgc tggataaggg gctcaaacag cgaatcgtcg
     1741 gtgcactggt gctggtggcg ctcgcggtgg tcttcctgcc catgctgttt tcccgtgaag
     1801 acgagctgcg ccagatctcg gtcgatgctc cagccatgcc ggaaaaaccg gtcatgccgg
     1861 aagtgacgct ggaccccgtg agcgtgcccg agccggtggc cgcagacgaa gtgccgccgg
     1921 tggagcccgt gccgcagacc cccagcgagc cgatcgccgc cccctcgcag ccggcggccg
     1981 actccaaggc tccggtgcag gccgaggcgc ctgtccaaca gccggccgcc gcgccggccg
     2041 aacagaagcc cgccagcggg ctggacgcca acaacctgcc ggtcagctgg tcggtccagc
     2101 tggccagcct gtccagccgc gctggcgcgg agaagctgca gcaaacgttg cgcagcggcg
     2161 ggtacaacgc ctatatccgc agtttcgacg gcatgaaccg ggtgttcgtc ggcccggtga
     2221 tcgagcgcgc cgaggcggac cgcctgcgtg accagctcaa ccgtcagcag aacctcaagg
     2281 gcttcgtggt gcgtttccag ccggaaaacg gctgatttcc tctatcgagt ccatatagcg
     2341 gccccggctt acccggccgg gcacgctctg ctagaattcg ccgcctttcc catctgtagg
     2401 cagcaacgtg gcattcactt gggtcgattg ggcgatcatt gccgttatcg ccatctccag
     2461 tctgatcagc ctgcgccgcg gctttttcaa ggaagccctg tcgctgctga cctggatcgt
     2521 cgcaggcgtg gttgcctgga tgttcggtgg ggccctgtcg cagcatcttt ccgggttcgt
     2581 agaaacgccg tcgatgcggg tcatcgcggc ctgcgccatt ctcttcgtgg tgaccctgct
     2641 ggtcggggcg ctgatcaatt tcctcatcgg tgagctgatc cgggtaaccg gcctgtcggg
     2701 caccgatcgt tttctcggca tggtcttcgg cgctgcgcgc ggggctctgc tggtggtggt
     2761 attggtgggg ctggtgagcc tggcaccggt acagcaggat cagtggtggc agcagtcgac
     2821 cctgctgccg catttcctga tggtggcgga ctggtcgaag aatcttatcc tgagcctgac
     2881 cagtcagtgg ctcgccagcg gcatcacgga tacgcccgag ttgccgttca aggacgtgct
     2941 ctcgcagccc aaactgcccg agagcctata ggtttccgat tcacaacaca gaggttgcgt
     3001 cacatgtgcg gcatcgtcgg tattgtcggt aagtccaacg tcaatcagtc cctgtacgac
     3061 gcgcttaccg tgctccaaca tcgcggccag gacgctgccg gcatcgtcac cagccacgac
     3121 ggacgtctgt tcctgcgcaa ggacaacggc ctggtgcgcg atgtgttcca gcaacaccac
     3181 atgcagcgcc tggtgggcaa ggtcggcatc ggccacgtgc gctatcccac cgccggcagc
     3241 tcgagctccg ccgaggcgca gccgttctac gtcaactcgc cgtacggcat caccctggcg
     3301 cacaacggca acctgaccaa cgtcgagcag ctgtcgcgcg agatctatga gtccgacctg
     3361 cgccatgtga acaccaactc cgactcggaa g
//
LOCUS       DATIHC010000732         1817 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_20781, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000732 DATIHC010000000
VERSION     DATIHC010000732.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1817
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20781"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..501)
                     /locus_tag="VLF16_12115"
     CDS             complement(<1..501)
                     /locus_tag="VLF16_12115"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003114817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSX71665.1"
                     /translation="MRILVVSDAWAPQVNGVVTSLQALVAELRGMGHLVKVLSPHDFR
                     HLPCPSYPEIPLAWDLWRVGPAIRDFRPDCVHLATEGPLGWAARRWLMRRGLAFSSAI
                     HTRFPEYVNTRCPRIPLAWGYAFLRRFHRPSQAVLVSTERLRDEFAAHGLRRLRLWRK
                     GVDTELF"
     gene            complement(498..1307)
                     /locus_tag="VLF16_12120"
     CDS             complement(498..1307)
                     /locus_tag="VLF16_12120"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HSX71666.1"
                     /translation="MSIAERSKPSRKQHVRTLWISDVHLGTRDCQAERLAAFLKRYQA
                     DRVYLVGDIIDGWKLRGGIYWPQAHTNVIRRLLTMSKRGTEVIYVTGNHDEFLRRYST
                     LILGNIQLVDEAVHETADGRRLLVIHGDQFDVITRYHKWLAFLGDSAYEFTLTLNRWL
                     NHWRERWGYGYWSLSAFLKHKVKTAVNFISDFEESIAHECVKRGLDGAVCGHIHHAEI
                     RRVNGVEYMNCGDWVESCSALIEHLDGSIQLYRLAEDQAQTAEVAAIGQAA"
     gene            1441..>1817
                     /locus_tag="VLF16_12125"
     CDS             1441..>1817
                     /locus_tag="VLF16_12125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSX71667.1"
                     /translation="MSSLLSLRHYHEQIAHSHDHGQLVFGLSGMLDFEVEGRGCRVAS
                     HSLAVVPPGSHHACASPRGSLCLVLDVPHDGWLQQRLGHHLDAGRRLLETPGRLDLSP
                     AQGRLVDWLAASPINDDVIAQQGA"
BASE COUNT          297 a          607 c          624 g          289 t
ORIGIN      
        1 gaacagttcg gtgtccacgc ccttgcgcca cagccgcagg cgacgcaggc cgtgggcggc
       61 gaactcgtcg cgcagacgct cggtgctcac cagtaccgcc tggctcggcc ggtggaagcg
      121 gcgcaaaaag gcgtagcccc aggccagcgg gatgcgcgga cagcgggtgt tcacgtattc
      181 ggggaagcgc gtgtggatgg cgctggaaaa ggccagcccg cggcgcatca gccagcgccg
      241 cgcggcccaa cccagcggac cctcggtggc caggtgcacg cagtccgggc ggaagtcgcg
      301 aatcgccggg ccgacccgcc acaggtccca ggccagcgga atctccgggt agctcgggca
      361 cggcagatga cggaaatcgt gcggcgacag caccttgacc aggtgtccca tgccgcgcag
      421 ttcggccacc agcgcctgca ggctggtgac cacgccgttg acctgcggcg cccaggcatc
      481 gctgacgacg agaatcctca tgccgcctgc ccgatggctg ccacttcggc ggtctgcgcc
      541 tggtcctcgg ccagccggta gagctggatg ctgccgtcca ggtgctcgat cagcgcggag
      601 caggactcga cccagtcacc gcagttcatg tactcgacgc cattcacccg gcgaatctcg
      661 gcgtggtgaa tgtgtccgca gacggcgcca tccaggccgc gcttcacgca ttcatgagcg
      721 atggactcct cgaagtcgct gatgaagttc accgccgtct tgaccttgtg cttgaggaac
      781 gccgacagcg accagtagcc gtagccccag cgctcgcgcc agtggttgag ccagcggttg
      841 agggtcaggg tgaactcgta ggcggagtcg ccgaggaagg ccaaccactt gtggtagcgg
      901 gtgatgacgt cgaactggtc gccgtggatc accagcaacc ggcggccatc ggcggtctcg
      961 tgcaccgcct cgtcgaccag ctggatgttg ccgaggatca gcgtggagta gcggcgcagg
     1021 aattcgtcgt ggttgccggt gacgtagatc acctcggtgc cgcgcttgct catggtcagc
     1081 aggcggcgga tcacgttggt gtgggcctgc ggccagtaga tgccgccgcg cagcttccag
     1141 ccgtcgatga tgtcgccgac caggtacacc cggtcggcct ggtagcgttt gaggaaggcc
     1201 gccaggcgct cggcctggca gtctcgggta ccgaggtgga catcggaaat ccacagggtg
     1261 cggacatgct gcttgcggct gggcttgctt cgctcggcga tgctcatggg cggcctccgg
     1321 ctgggtttag ccgagattgc gcgagggtgg tgaaccggac atgacaggcg aatgacgatt
     1381 gcatgaccac cagccggacc gcctcgccat gtacactgac cgttcgatca ggagcccgtc
     1441 atgtcatcgc tgctctccct gcgccactac cacgaacaga tcgcccacag ccacgaccac
     1501 gggcaactgg tgttcggcct gtccggcatg ctcgatttcg aggtggaagg ccgcggttgc
     1561 cgcgtcgcca gccacagcct ggccgtcgtg ccgccgggca gtcatcacgc ctgcgccagc
     1621 ccgcgcggca gcctgtgtct ggtgctcgac gtaccgcacg acggctggct gcagcagcgc
     1681 ctgggccatc acctggacgc cggccggcgc ctgctggaga cgcccggccg cctcgacctg
     1741 agcccggccc agggccgcct ggtcgactgg ctggcggcca gcccgatcaa cgacgacgtc
     1801 atcgcccagc agggtgc
//
LOCUS       DATIHC010000733         4728 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34660, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000733 DATIHC010000000
VERSION     DATIHC010000733.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4728
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34660"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1011
                     /locus_tag="VLF16_12130"
     CDS             <1..1011
                     /locus_tag="VLF16_12130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metalloprotease"
                     /protein_id="HSX71668.1"
                     /translation="TNRPDVLDPALLRPGRFDRQVVVGLPDIRGREQILKVHMRKVPV
                     GDNVDAAVIARGTPGFSGADLANLVNEASLFAARASKRLVEMKEFELAKDKIMMGAER
                     KSMVMSEKEKLNTAYHEAGHAIVGRLVPEHDPVYKVSIIPRGRALGVTMFLPEEDRYS
                     LSKRALTSQICSLFGGRIAEEMTLGFDGVTTGASNDIMRATRLARNMVTKWGLSEKLG
                     PLMYAEEEGEVFLGRSAGSQHANVSGETAKAIDEEVRSIIDGCYGTAKRLLEENRDKL
                     DMMADALMKYETIDSDQIDDIMAGRTPREPRDWQGGSGTPAPKEQAERPEAPIGGPAG
                     EH"
     gene            1021..1872
                     /gene="folP"
                     /locus_tag="VLF16_12135"
     CDS             1021..1872
                     /gene="folP"
                     /locus_tag="VLF16_12135"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HSX71669.1"
                     /translation="MIVPQHPIRLPCGSRTLDLAHPHVMGILNVTPDSFSDGGRFAAR
                     DAALRHAVEMVAAGATLIDVGGESTRPGARPVSPVEELERVAPVVEAIAAELDVVISL
                     DTSPPAVMREGARLGAGMINDVRALRREGALEAAAETGLAVCLMHMLREPGTMQQSPR
                     YEDVVAEVGDFLAQRLAACAVAGISPERVVLDPGFGFAKTLAHNLSLFRRLEALHEFG
                     RPLLVGVSRKSMIGQALGREVDERLPGSLALAALAVAKGACILRVHDVAETVDAVRMI
                     AAVQAAE"
     gene            1890..3227
                     /gene="glmM"
                     /locus_tag="VLF16_12140"
     CDS             1890..3227
                     /gene="glmM"
                     /locus_tag="VLF16_12140"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_function: GO:0016868 - intramolecular
                     phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HSX71670.1"
                     /translation="MGRKYFGTDGIRGLVGQFPITPEFILKLGWAAGMAFRKQGKCRI
                     LIGKDTRISGYMFESALEAGLVAAGADVMLLGPMPTPAIAYLTRTFQAEAGIVISASH
                     NPHHDNGFKFFSGKGTKLPDEIELMIEELLDQPMTVVESEQLGKVSRINDAAGRYIEF
                     CKSSVPTSTTFAGLKLVIDCAHGATYKVAPSVFRELGAQVSVLSAQPNGLNINDNCGS
                     THVDALQAEVLAQQADIGIAFDGDGDRVLMVDHTGAMVDGDELLYIIARDLKERGKLQ
                     GGVVGTLMSNLGLELALGELGVPFARAKVGDRYVMAELLQRDWQLGGENSGHLVCCQH
                     TTTGDAIIAALQVLLALKRSGRTLAEARQAVRKCPQVLINVRFSGDVDPVEHVAVKDA
                     CARVTDLMAGRGRVLLRKSGTEPLVRVMVEGDDEIQVRGYAEELANVVAEVCA"
     gene            3293..4048
                     /gene="tpiA"
                     /locus_tag="VLF16_12145"
     CDS             3293..4048
                     /gene="tpiA"
                     /locus_tag="VLF16_12145"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HSX71671.1"
                     /translation="MRRPLVAGNWKMHGTRASVAELIKGLRQLALPTGVEVAVMPPCL
                     YLNQVMVGLEGKSIAVGAQNCAVEPMQGALTGEIAPSQLADAGCRMVLVGHSERRLIL
                     GERDEQVSRKFAAAQSCGLVPVLCIGETLEQRQAGKTLSVVGEQLGSVIEELGVGAFA
                     KAVVAYEPVWAIGTGLTATPQQAQEVHAAIRAQLSAENAEVARGVRILYGGSVKAANA
                     VELFGMQDIDGGLIGGASLNADEFGAICRAAGN"
     gene            4052..4432
                     /gene="secG"
                     /locus_tag="VLF16_12150"
     CDS             4052..4432
                     /gene="secG"
                     /locus_tag="VLF16_12150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HSX71672.1"
                     /translation="MLETVVIVVHLLGAIGVVGLVLLQQGKGADAGASFGAGASATVF
                     GSQGSATFLSRFTAILAAVFFITSLGLAFFAKEKADNLTQAGLPDPAVLEVQQKPAVE
                     DVPVLEEQKPAVEKSDVPAAPEQK"
     gene            4443..4528
                     /locus_tag="VLF16_12155"
     tRNA            4443..4528
                     /locus_tag="VLF16_12155"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4477..4479,aa:Leu,seq:gag)
     gene            4625..4698
                     /locus_tag="VLF16_12160"
     tRNA            4625..4698
                     /locus_tag="VLF16_12160"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4659..4661,aa:Met,seq:cat)
BASE COUNT          814 a         1338 c         1624 g          952 t
ORIGIN      
        1 accaaccgtc ccgacgtgct cgacccggcg ctgctgcgtc cgggacgttt tgatcgccag
       61 gtggtggtcg gtttgccgga tatccgtggt cgcgagcaga ttctgaaagt gcacatgcgc
      121 aaggtgccgg tgggcgacaa cgtcgatgcc gcggtcattg cgcgcggtac cccgggcttc
      181 tccggcgccg atctggccaa cctggtcaac gaggcttcgc tgttcgccgc tcgcgccagc
      241 aagcgcttgg tcgagatgaa ggaattcgaa ctggccaagg acaagatcat gatgggcgcc
      301 gagcgtaagt ccatggtcat gtccgagaag gagaagctca acaccgcgta tcacgaggcc
      361 ggccacgcta tcgtcggtcg cttggtgccc gagcatgacc cggtttacaa ggtatcgatc
      421 attccgcgtg gtcgtgcgct cggcgtgacc atgttcctgc cggaagagga ccgttacagc
      481 ctgtccaagc gcgcactgac cagccagatc tgctcgctgt tcggtggtcg tattgccgag
      541 gaaatgacgc tggggttcga cggtgtcacc actggcgcct ccaacgacat catgcgtgcc
      601 acccgcctgg cgcggaacat ggtcaccaag tggggcctgt ccgagaagct cggtccgctg
      661 atgtatgcgg aagaggaggg cgaggtgttc ctcggtcgta gcgccggcag tcagcatgcc
      721 aatgtgtcgg gcgaaaccgc caaggccatc gacgaggaag tgcgcagcat catcgacggc
      781 tgctacggca ccgccaagcg cctgctggag gagaaccgcg acaagctcga catgatggcc
      841 gatgcgctga tgaagtacga aaccatcgac tccgatcaga tcgacgacat catggctggt
      901 cgcactccgc gggagccgcg cgactggcag ggcggctcgg gcactcccgc gcccaaggag
      961 caggccgagc gtcccgaagc gcccatcggt ggtcctgccg gcgagcacta aggccatcga
     1021 atgatcgttc cgcaacaccc gatccggctg ccctgtggca gccggacgct cgatctggcc
     1081 catccgcacg tgatgggcat tctcaacgtc acccccgact cgttttccga tggcggccgc
     1141 ttcgctgcgc gcgacgctgc gctgcgccat gctgtcgaga tggttgcggc cggcgcgacg
     1201 ctgatcgacg tcggtggcga gtccacccgt cccggtgcgc gcccggtctc gcccgtcgag
     1261 gagctggagc gtgtggcgcc ggtggtcgag gccatcgctg ccgagctgga tgtcgtcatc
     1321 tccctggata cgtccccccc cgccgtgatg cgcgaaggcg cgcggctcgg ggctggcatg
     1381 atcaacgacg tacgtgcatt gcggcgtgag ggtgcgctgg aggctgctgc ggagaccgga
     1441 ctggcggtgt gcctgatgca tatgctccgg gagccgggca ccatgcagca gagccctcga
     1501 tatgaggatg tggttgcgga ggtgggggat ttcctcgctc agcgcttggc agcctgcgcc
     1561 gtggctggaa tctcgccgga gcgcgtggtg ctcgatcctg gtttcggctt cgccaagacc
     1621 ctcgcgcaca acctgagttt attcaggcgc ctggaggcgc tgcacgagtt cgggcgacca
     1681 ttgctggtcg gcgtgtcgcg caagagtatg attggtcagg cgctggggcg tgaagtcgac
     1741 gagcgcttgc cgggaagctt ggctctggcg gcgctggccg tggccaaggg ggcctgcatt
     1801 ttgcgggtcc atgacgttgc cgagacggtc gatgccgtgc gaatgatcgc tgccgtgcag
     1861 gcggcagaat aggaagttgg agtataggaa tgggtagaaa atattttggt accgacggca
     1921 tccgcggtct ggttggtcag tttcctatca ctcccgagtt cattctcaag cttggctggg
     1981 ccgctggcat ggcgttccgc aaacagggca agtgccgcat cctgatcggc aaggacacgc
     2041 gcatttccgg ctacatgttc gagtcggcgc tcgaggccgg attggttgcc gcaggtgccg
     2101 atgtgatgct gttggggccg atgcccacgc cggccatcgc ctatctgacg cgcacctttc
     2161 aggccgaggc tggcatcgtc atcagtgcct cgcataatcc gcaccatgac aatggcttca
     2221 agttcttctc gggcaagggc accaagctgc cggacgagat cgagctgatg atcgaggagc
     2281 ttctcgatca gccgatgacc gtggtggagt ccgaacagtt gggcaaggtc tcacgcatca
     2341 acgatgcggc cggacgctat atcgagtttt gcaagagtag cgtgccgact agcacgactt
     2401 tcgccgggct caagctggtc atcgactgcg cacacggcgc tacttacaag gtggcgccca
     2461 gcgtttttcg tgagctgggt gcccaggtct cggtgctctc ggcgcagccg aacggcctga
     2521 acatcaacga caattgcggt tctacccatg tcgatgcgct gcaagccgag gtgctggcgc
     2581 agcaggcgga tatcggcatt gccttcgacg gtgatggtga tcgcgtgctg atggtcgacc
     2641 acactggcgc gatggtcgat ggcgatgagc tgctgtacat cattgcgcgc gacctgaagg
     2701 agcgtggcaa gttgcagggc ggcgtcgtgg gtacgctgat gagcaatctg gggctcgagc
     2761 ttgcgcttgg tgagctgggt gttcccttcg ctcgcgccaa ggtcggcgac cgctacgtga
     2821 tggccgagct gctgcagagg gactggcagc tgggggggga gaactcaggt cacctggtgt
     2881 gctgtcagca caccaccacc ggcgatgcga tcatcgcggc gctgcaggtg ctgctggcgc
     2941 tcaagcgcag tgggcggact ctggccgagg cgcggcaggc ggtgcgcaag tgcccgcagg
     3001 tgctgatcaa tgtgcgcttc tctggcgatg tcgatccggt cgagcatgta gcggtcaagg
     3061 atgcctgcgc ccgggtcacc gaccttatgg ccgggcgcgg ccgggtgctg ctgcgcaagt
     3121 ccggtaccga gccgctggtg cgggtgatgg tcgaaggcga cgacgagatc caggtgcgcg
     3181 gttatgccga agagctggca aacgtggttg ccgaggtttg cgcctgaatc ggcttgcgag
     3241 gggagaggct cttgggtaac atctgcgccc actttgaacg acgaggtctg gcatgcgtcg
     3301 ccccctggta gctggtaact ggaaaatgca cggtacccgc gccagcgtcg cagagctgat
     3361 caagggcttg cgccaactag cgctacccac cggcgtcgaa gttgcggtta tgccgccctg
     3421 cttgtatctc aatcaggtca tggtggggct ggaaggcaag tccattgccg tcggtgcgca
     3481 gaactgtgcg gtcgagccca tgcagggcgc gttgaccggc gagattgcgc cgagtcaatt
     3541 ggccgatgcc ggttgccgca tggttctggt cgggcactcc gagcgtcgtt tgattctcgg
     3601 tgagcgcgac gagcaggtca gtaggaagtt tgctgccgct cagtcctgtg gtctggttcc
     3661 ggtgctctgt atcggtgaga ccctggagca gcgtcaggct ggcaagactc tgtcggtagt
     3721 gggcgagcag cttggtagcg tgattgagga attgggcgtg ggagctttcg cgaaagcggt
     3781 agtggcctac gagccggttt gggccatcgg taccgggctg acggcgaccc cgcaacaggc
     3841 tcaggaagtt catgcagcca ttcgcgctca gttgagtgcg gagaatgccg aggtggcgcg
     3901 cggtgtaaga attctgtacg gcggtagtgt caaggccgcc aacgctgtcg agttgttcgg
     3961 catgcaggat atcgacgggg ggctcattgg tggtgcctcc ttgaatgcag atgagtttgg
     4021 tgcgatctgt cgcgctgcag gaaactgata aatgctggaa acagtcgtaa tcgtcgtaca
     4081 tctgctgggc gccatcggtg tcgttggtct ggttctgctg cagcagggca agggtgccga
     4141 cgcgggggcc tcgttcggtg ccggtgcatc cgcaaccgta ttcggtagcc aaggttctgc
     4201 tacttttctg agtcgcttta ctgctatact cgccgcggtt tttttcatta ccagcttggg
     4261 tttagccttc tttgctaaag aaaaagctga taatctgacg caggctggtc tgccggatcc
     4321 ggcggtactg gaagtgcagc agaagccggc cgtcgaagac gtcccggtgc tcgaagagca
     4381 gaagcctgcg gtggagaaat ccgacgtgcc ggcggctccg gagcaaaagt aataccctct
     4441 ttgccgaggt ggtggaattg gtagacacgc taccttgagg tggtagtggc cataggctgt
     4501 aggggttcga gtcccctcct cggtaccata tgaaggcaag gcccgcagat cgcgggcctt
     4561 gtcgttttca ggagctcggt tgaccctcga gggttagatc cgtatactcc tggcccagct
     4621 ttggcgcggg gtggagcagt ctggtagctc gtcgggctca taacccgaag gtcgcaggtt
     4681 caaatcctgc ccccgctact tctccgaggc cccgcaactg cggggtta
//
LOCUS       DATIHC010000734         1555 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11315, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000734 DATIHC010000000
VERSION     DATIHC010000734.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1555
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11315"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(26..>1555)
                     /locus_tag="VLF16_12165"
     CDS             complement(26..>1555)
                     /locus_tag="VLF16_12165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017517872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_process: GO:0000023 - maltose metabolic process
                     [Evidence IEA];
                     GO_process: GO:0005991 - trehalose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative maltokinase"
                     /protein_id="HSX71673.1"
                     /translation="ELVQAPARRVLENDVLATYLGKRRWFSAHAEASGAPSLDYALPF
                     GDLRALAEVTLGGERYQLPLAYVDEKPSGSPLPQQLALARLRRGRQVGLLTDAFSVPD
                     FTYEVLAHLHGHQVLPAGNGEIHFLPTAKFAEYPAVPGEEVQVISAEQSNSSVIIGER
                     MVLKLVRRLFPGVHPEAEMGGFLTARGYANVAPMLGEVRRVDAQGQPHTLMILQGYLS
                     NQGDAWSWTLNNLERAIRDELSGGGGGEHEYDALAELQTFAAVLGRRLGEMHQALAQP
                     TDDPAFGARPSDEQDSAQWGESISAQLQQALDALDRGREHLNEADLAELDGLLNQREA
                     LQRLVTDLASLAAGGIRIRVHGDLHLGQVLVVQGDAYLIDFEGEPSRTLEQRRERHSP
                     MKDVAGMLRSFDYAAALALRNVQGADSSAETEQLRQRLVARYRSEARTAFYDAYRLAA
                     ADLPHEWHAREGEGAALALFSLEKAAYEVLYEAAYRPDWVGVPLHGLLELIHQLQGHR
                     R"
BASE COUNT          219 a          544 c          549 g          243 t
ORIGIN      
        1 gcgcggcgca ggcgttccaa atcgttcatc gacgatgtcc ttgcaattga tgaatcagtt
       61 cgagcaatcc atgcagcggc acgcccaccc agtcggggcg ataggccgct tcgtagagca
      121 cttcgtaggc cgccttctcc aggctgaaca gcgccagggc ggcgccttcg ccctcacgcg
      181 catgccattc atgcggcagg tcggcggcgg ccagtcggta ggcgtcgtag aaggcggtgc
      241 gagcctcgct gcgataacgc gccaccaggc gctggcgcag ctgctcggtt tccgccgagg
      301 agtcggcgcc ctggacattg cgcagggcca gcgccgccgc gtagtcgaag gagcgcagca
      361 tgccggcgac atccttcatc gggctatggc gctcgcggcg ctgctccagg gtgcggctcg
      421 gttcgccctc gaagtcgatc aggtaggcat cgccctgcac caccagcacc tggcccagat
      481 gcaggtcgcc gtgcacgcgg atgcggatgc cgcctgcggc caggctggcg aggtcggtca
      541 ccagccgctg cagcgcctcg cgctggttca gcagcccgtc cagctcggcc aggtcggcct
      601 cgttgaggtg ttcgcggccg cggtcgaggg cgtccagcgc ctgctgcagc tgggcgctga
      661 tggattcgcc ccactgggcg ctgtcctgct cgtcgctggg ccgcgcgccg aaggccggat
      721 cgtcggtcgg ctgggccagc gcctggtgca tttcgcccag gcggcggccg agcacggcgg
      781 cgaaggtctg cagctcggcc agcgcgtcgt actcatgctc gccgccgcca ccgccgctca
      841 gctcgtcacg gatggcccgc tcgagattgt tcagggtcca gctccaggca tcgccctggt
      901 tgctcaggta gccctgcagg atcatcagcg tgtgaggctg gccctgggcg tccacacggc
      961 gcacctcacc cagcatcggc gcgacgttgg catagccgcg ggcggtgagg aagccgccca
     1021 tctccgcctc aggatgcacg cccgggaaca ggcggcgcac cagcttgagc accatgcgct
     1081 cgccgatgat caccgagctg ttggactgct cggcggagat cacctggacc tcctcgcccg
     1141 gcaccgccgg gtactcggcg aatttcgccg tcggcaggaa gtggatctcg ccattgccgg
     1201 ccggcagcac ctggtgcccg tgcaggtggg cgagcacctc gtaggtgaag tccggcacgc
     1261 tgaacgcgtc ggtcagcagg ccgacctggc ggccgcggcg cagacgcgcc agggccagct
     1321 gctgcggcag cgggctgccg ctcggttttt cgtcgacgta ggccagcggc agctggtagc
     1381 gctcgccgcc cagcgtgacc tcggccaggg cgcgcaggtc gccgaagggc aacgcgtagt
     1441 ccagactcgg ggcgccgctc gcctcggcgt gggcggagaa ccagcggcgc ttgcccaggt
     1501 aggtggcaag cacgtcgttt tccagcacgc ggcgcgccgg cgcctgcacc agttc
//
LOCUS       DATIHC010000735         1746 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_20802, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000735 DATIHC010000000
VERSION     DATIHC010000735.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1746)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1746)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1746
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20802"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..221
                     /locus_tag="VLF16_12170"
     CDS             <1..221
                     /locus_tag="VLF16_12170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010490280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HSX71674.1"
                     /translation="QKGRWRTPENSLHIAELLGGWPGALVAQQVFRHKTRKASFQLVF
                     WAIVALHQAFWIDQLALGGRYFGHLLPL"
     gene            complement(218..565)
                     /locus_tag="VLF16_12175"
     CDS             complement(218..565)
                     /locus_tag="VLF16_12175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HSX71675.1"
                     /translation="MNAEQVAAYCLQLPGAREDLKWGSNRVFSIAGNKMFAILDFMGD
                     ALAFKVEPELFLGYVDRPGIRPAPYLARAHWISMAPPFPLGDAELRDLLARSHQLVVR
                     RLPKIRQVGLLLD"
     gene            619..1125
                     /locus_tag="VLF16_12180"
     CDS             619..1125
                     /locus_tag="VLF16_12180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011104142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1993 domain-containing protein"
                     /protein_id="HSX71676.1"
                     /translation="MSLSLYQASVPVFVRMFGNLSAILDKAVADAEARKIDPSVLLNA
                     RLAPDMHPLTRQVQIASDAAKGCAARLSGVEVPSFPDTESSFAELQARIAKTLDFIKS
                     LSPEQIDSGAGREVVIKVPGSELKFSGEDYLLHFVLPNFYFHVTTAYAILRHNGLGIG
                     KMDYLGRP"
     gene            complement(1235..>1746)
                     /locus_tag="VLF16_12185"
     CDS             complement(1235..>1746)
                     /locus_tag="VLF16_12185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016486587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSX71677.1"
                     /translation="TLLRTLVGEMAPDAGEVKWTESAEVGYYAQDHAHDFEDDVSLFD
                     WMGQWTQGEQTIRGTLGRMLFSNDEIQKSVKVISGGEQGRMLFGKLILQKPNVLVMDE
                     PTNHLDMESIEALNLALENYPGTLIFVSHDREFVGSLATRIIELSENGVTDFSGTYDD
                     YLRSQGVIV"
BASE COUNT          293 a          587 c          557 g          309 t
ORIGIN      
        1 cgcagaaggg gcgctggcgc acgccggaga acagcctgca catcgccgag ctgctcggcg
       61 gctggcccgg cgccctggtg gcgcagcagg tgttccgcca caagacgcgc aaggcgtcct
      121 tccaactggt gttctgggcc atcgtcgcgc tgcaccaggc cttctggatc gaccagctgg
      181 cgctgggcgg ccggtacttc ggtcacctgc taccgctcta gtcgagcagc aagcccacct
      241 ggcggatctt cggcagccgg cgcaccacca gctggtggga gcgcgccagc aggtcgcgca
      301 gctcggcgtc accgaggggg aagggcggcg ccatgctgat ccagtgcgca cgggccagat
      361 acggcgcggg gcggatgccc gggcggtcga cgtagccgag aaacagctcc ggctcgacct
      421 tgaacgccag cgcgtcgccc atgaaatcga ggatggcgaa cattttgttg cccgctattg
      481 agaacacccg gttgctgccc cattttagat cctcgcgcgc acccggcagc tgcaggcagt
      541 aagcggcgac ctgttccgcg ttcatcatgt ccagcctcct gtcgctgtga cggctaacct
      601 agcaaaggaa ccttccccat gtcgctgtcc ctctaccagg cctcggtgcc cgtattcgtg
      661 cgcatgttcg gcaatctctc ggccattctc gacaaggccg tggccgatgc cgaggccaga
      721 aagatcgatc cttccgtatt gctcaacgca cgtctggcgc cggacatgca tccactgacc
      781 cgccaggtgc agatcgccag cgacgcggcc aagggctgcg ccgcgcgcct gtccggtgtc
      841 gaggtcccca gcttcccgga caccgaaagc agcttcgccg agctgcaggc gcgcatcgcc
      901 aagaccctgg acttcatcaa gagcctgagc cccgagcaga tcgacagcgg cgcgggtcgc
      961 gaagtcgtga tcaaggtgcc gggcagcgag ctgaagttca gcggcgagga ctacctgctg
     1021 catttcgtgc tgccgaactt ctatttccac gtcaccaccg cttacgccat cctgcgccac
     1081 aacggcctgg gcatcggcaa gatggactac ctcgggcggc cctgagccgg ggcgtcgcgg
     1141 tggtgcgcac ggcgcaccct gcgatcggct ccgaaccgcg cccatgaaaa agccccgcac
     1201 tggcggggct tctttttgct ttacgaaact cgcgtcagac gatcacgccc tggctgcgca
     1261 ggtagtcgtc gtaggtgccg ctgaaatcgg tcacaccgtt ctcggagagc tcgatgatgc
     1321 gggtggccag ggagccaacg aactcgcggt cgtggctgac gaagatcagc gtgcccgggt
     1381 agttctccag cgccaggttg agcgcctcga tggattccat gtccaggtgg ttggtcggct
     1441 cgtccatcac cagcacgttg ggcttctgca ggatcagctt gccgaacagc atgcggccct
     1501 gctcaccacc ggagatgacc ttgaccgact tctggatctc gtcgttgctg aacagcatgc
     1561 ggcccagggt gccgcggatg gtctgctcgc cctgggtcca ctggcccatc cagtcgaaca
     1621 ggctgacgtc gtcctcgaag tcgtgggcgt ggtcctgggc gtagtagccg acttcggcac
     1681 tctcggtcca cttcacctca ccggcgtccg gcgccatctc gccgaccagg gtgcgcagca
     1741 gggtgg
//
LOCUS       DATIHC010000736         1612 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17364, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000736 DATIHC010000000
VERSION     DATIHC010000736.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1612
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17364"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(101..1186)
                     /locus_tag="VLF16_12190"
     CDS             complement(101..1186)
                     /locus_tag="VLF16_12190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017521263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium:proton antiporter"
                     /protein_id="HSX71678.1"
                     /translation="MRLLKDEKFLLIALLLALLVYPLEHLLLSGGRALAGATVLVLLL
                     SIVSVSLRVAHHAEVLAEKVGEPYGTMILTLSAVLVEVVILAIMISHNHSPTLARDTI
                     YAAVMLDLNGILGLAALLGGLKHGEQQYNDDSGKTYVTMILTAVGISMVIPELIPAEQ
                     WRVYSLFTIGCMVTLYALFLRMQTGQHSYFFSYNYAVRRQQPPADEETAPGSTRGAIA
                     LLVCGVVLIGTLAEVMSKALDVGLEGSGVPAMLPALLVAAISASPEILTALRAALSNR
                     MQSAINIALGASLSTVILTVPVIEALALYQGQPFRMAMTPLQTGMMFITLVVAGLNLY
                     DGKTNAIEGMTHFVLFATFLMLSLMGL"
     gene            1389..1595
                     /locus_tag="VLF16_12195"
     CDS             1389..1595
                     /locus_tag="VLF16_12195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011915152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2934 domain-containing protein"
                     /protein_id="HSX71679.1"
                     /translation="MIDDEQIRARAYALWEQAGRPERPAEDFWDQAREQLRGESDTGD
                     DDAESFSGGIESSVAPPGPNRAAD"
BASE COUNT          287 a          526 c          578 g          221 t
ORIGIN      
        1 gagaaggccc tgggcgtggc cgcccgcacc cgcgcggtga cgcagatcga ggaccacatg
       61 cgcgaccacg cgctgcacca cgatcaatag gcggcgacgc tcacagaccc atcagcgaca
      121 gcatcaggaa ggtggcgaac agcacgaagt gggtcatgcc ctcgatggcg ttggtcttgc
      181 cgtcatagag gttgagcccg gccaccacca gggtgatgaa catcatgccg gtctgcagcg
      241 gcgtcatggc catgcggaac ggctggccct gatacagcgc cagcgcctcg atcaccggca
      301 ccgtgaggat gacggtggac agcgaggcgc cgagggcgat gttgatggcc gactgcatgc
      361 ggttgctcag cgcggcgcgc aacgcggtaa ggatctccgg gctggcggag atggccgcca
      421 ccagcagcgc cggcagcatg gccggcacgc cgctgccctc caggccgaca tccagcgcct
      481 tggacatcac ctccgccagc gtgccgatca gcaccacacc gcacaccagc agggcgatgg
      541 cgccgcgcgt gctgccgggc gccgtctcct cgtccgccgg tggctgctgc cggcgcaccg
      601 cgtagttgta gctgaagaag tagctgtgct ggccggtctg catgcgcagg aacaaggcgt
      661 agagggtgac catgcagccg atggtgaaca gcgaatacac gcgccactgt tcggccggga
      721 tcagctccgg gatgaccatg gagatgccca ccgcggtgag gatcatggtc acgtaggtct
      781 tgcccgagtc gtcgttgtac tgctgctcgc cgtgcttcag accgccgagc agcgcggcca
      841 ggccgagaat gccgttgagg tcgagcatca ccgccgcgta gatggtgtcg cgggccaggg
      901 tcggcgaatg gttgtggctg atcatgatgg ccaggatgac cacctcgacc agcaccgcgg
      961 acagcgtcag gatcatggtg ccgtagggct cgccgacctt ctcggcgagc acctcggcgt
     1021 ggtgcgccac gcgcagcgag acgctgacga tggagagcag cagcaccagc acggtcgccc
     1081 cggcgagcgc ccggccgccg ctcagcagaa ggtgctccag cgggtacacc agcagcgcca
     1141 ggagcagggc gatgagcagg aatttctcgt ctttgagcag gcgcatggcg gcatccgttt
     1201 caggcgggcg accgagcggc ggcccaccct gtgcctgaca gcgcaggctc cgcgggtgtt
     1261 cccgctgccg ccggcgtgca ggcggcgaat ggcgcccaac tttatgccgg tcaggacggt
     1321 caagccttca tggagggcgc gacgtgccgc tccgatggtc ggacggtgga ccgcgcgagg
     1381 agaacgagat gatcgatgac gagcagatcc gcgcacgcgc ctacgcgctg tgggaacagg
     1441 ccggacgccc cgagcgcccg gccgaggact tctgggacca ggcccgcgag cagctgcgcg
     1501 gtgagagcga cacgggcgac gacgatgccg agtcgttcag cggcggcatc gagagcagcg
     1561 tggcgccgcc cgggccgaac cgcgctgcgg actagggcgc cggcatcatc cg
//
LOCUS       DATIHC010000737         2597 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30104, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000737 DATIHC010000000
VERSION     DATIHC010000737.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2597
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30104"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..564)
                     /locus_tag="VLF16_12200"
     CDS             complement(<1..564)
                     /locus_tag="VLF16_12200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017936865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HSX71680.1"
                     /translation="MNNGAIFPWKSGNRFELLVDGPAFMPAMLVAIARAERRVALELY
                     MVEDGNCCDALIQALVSAGERGVEVQCLFDDFGCLKLSRPARERMLAAGVQLRLYNPI
                     RWRRGLHNLYRDHRKILLIDEHSVFVGGAGATDEFWDADAPEHCWHEVMVRVEGPLVA
                     HWRQLFDRQWLACEGRRPWKLGQGQGLD"
     gene            complement(561..1148)
                     /locus_tag="VLF16_12205"
     CDS             complement(561..1148)
                     /locus_tag="VLF16_12205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013714321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HSX71681.1"
                     /translation="MARILPALAGVLFATCLALPAQADWYLDNESSRLSFISTKAGNL
                     SEVHRFLTLHGTIDEQGAARLRVEMDSVSTGIPVRDERLRDLLFATAQYPDARIMAQM
                     DLAPITGLAPGAQLEIRLPIQVEIRGRKHGYMTELLATRLDDRRFQVVTLAPLVLHAE
                     HFGLQKGIEALREVARLDSISLSVPVGAVMIFTTR"
     gene            complement(1238..1567)
                     /locus_tag="VLF16_12210"
     CDS             complement(1238..1567)
                     /locus_tag="VLF16_12210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016494529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HSX71682.1"
                     /translation="MIRRRPLLSVFLLLLAGLVLLAWLNRVHLAAFPGIIGAYTAKEY
                     CSCRYVSGNPAEYCAGYVEQYVPISAFHDDAERKRVTASGMGSSQTAAWLGPRQGCQL
                     QEQADPR"
     gene            complement(1564..>2597)
                     /locus_tag="VLF16_12215"
     CDS             complement(1564..>2597)
                     /locus_tag="VLF16_12215"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012017805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HSX71683.1"
                     /translation="PIPEWSSQPAAASPAVQALDDYAFAPRDDAARTGVRSDALLVIR
                     DGVIVHERYAAPTTAQTPHLTWSISKSLFASVLGVAYGEGHFKLDDAVAQHYPPFAAH
                     PDVKMGHLLNWASGLAWQEDYEYAPLKSSVVAMLYTRGRDDMAGFTAGHALDAIPGTR
                     FRYSSGDSNVLGASLKSMVGEQAYADYPWTALFEPLGIASAVWERDASGTFVASSYAY
                     LTARDLARVGLLMQRDGRWGERQLLPQSWVAFNRTPFANYRPDPQQPGDAVPGGQWWL
                     NATLEGASKPWPDVPDDAFAALGHWGQALYVLPAQKLVVVRYADDRDASYNHNELLKR
                     VLAAYGEQP"
BASE COUNT          399 a          868 c          943 g          387 t
ORIGIN      
        1 gtccagcccc tggccctggc ccagcttcca cgggcggcgt ccttcgcagg ccagccactg
       61 gcggtcgaac agctgccgcc agtgcgccac cagcggtccc tcgacccgca ccatcacctc
      121 gtgccagcag tgttcgggcg catcggcatc ccagaattca tcagtggctc cggcgccgcc
      181 gacgaacacg ctgtgctcgt cgatcagcag gatcttgcgg tggtcgcggt acaggttgtg
      241 caggccgcgg cgccagcgaa tcgggttgta cagacgcagc tgcacgccgg ccgcgagcat
      301 gcgttcgcgc gccgggcggc tgagcttgag gcagccgaaa tcgtcgaaca ggcactgcac
      361 ctcgacgcca cgctcgccgg ccgagaccag cgcctggatc agcgcatcgc agcagtttcc
      421 gtcctcgacc atgtacagct cgagggcgac gcggcgctcg gcgcgggcga tcgccaccag
      481 catggccggc atgaaggccg ggccgtcgac cagcaactcg aagcggttgc cggatttcca
      541 ggggaagatc gcgccgttgt tcatcgggtg gtgaagatca tcacggcgcc gaccggcacc
      601 gacaggctga tgctgtccag ccgcgccacc tcgcgcaggg cctcgatgcc cttctgcagg
      661 ccgaagtgct cggcgtgcag caccagcggc gccagggtca ccacctggaa gcggcggtcg
      721 tccaggcgcg tggccaaaag ctcggtcatg tagccgtgct tgcggccacg gatttccacc
      781 tggatcggca ggcggatctc cagctgcgcg ccgggcgcca ggccggtgat gggcgccagg
      841 tccatctgcg ccatgatgcg cgcgtcgggg tattgcgcgg tggcgaacag caggtcgcgc
      901 aggcgttcgt cgcgcaccgg gatgccggtg ctcaccgagt ccatctcgac gcgcaggcgc
      961 gcagcgccct gctcgtcgat ggtgccgtgc agggtgagga agcgatgcac ctcggagaga
     1021 ttgccggcct tggtcgagat gaacgacagg cgcgaggact cgttgtccag gtaccagtcg
     1081 gcctgcgccg gcagggccag gcaggtggcg aacaggacgc cggcaagggc tggaaggatt
     1141 ctggccatgg gctcacgtgc ttgcggtttg agcgccacga tagcgggccg ccgaggcctt
     1201 gccaaacgtc gagcggttgc cggatgtggc gggccgatca ccggggatcg gcctgctcct
     1261 gcaactggca gccctggcgc gggcccagcc aggctgcggt ctggctgctg cccatgccgg
     1321 aggcggtcac ccgcttgcgc tcggcgtcgt cgtggaacgc gctgatcggc acgtactgct
     1381 cgacgtagcc ggcgcagtac tcggccgggt tgccgctgac gtaacggcag gagcagtact
     1441 ccttggccgt gtaggcgcca atgatgccgg ggaaggcggc gaggtggacg cggttgagcc
     1501 aggccagcag caccagcccg gccagcagca ggaggaatac ggacagcagg ggacgacgcc
     1561 ggatcatggc tgttctccgt aggcggccag cacgcgcttg agcagttcgt tgtggttgta
     1621 gctggcgtcg cggtcgtcgg cgtagcgcac caccaccagc ttctgcgccg gcagcacgta
     1681 gagcgcctga ccccagtggc cgagggcggc gaaggcatcg tccggcacat ccggccaggg
     1741 cttgctcgcg ccctccagcg tcgcgttgag ccaccactgg ccaccgggca cggcatcgcc
     1801 cggctgctgc gggtcgggcc ggtagttggc gaagggcgtg cggttgaacg ccacccagct
     1861 ctgcggcaac agctggcgct cgccccaacg gccgtcgcgc tgcatcagca ggccgacgcg
     1921 ggccagatca cgggccgtca ggtaggcata ggacgaggcg acgaaggtgc cactggcgtc
     1981 gcgttcccac accgccgagg cgatgcccag cggttcgaac agcgcggtcc aggggtagtc
     2041 ggcataggcc tgctcgccga ccatcgactt gaggctggcg cccagcacgt tgctgtcgcc
     2101 gctggaatag cggaagcgcg tgccgggaat cgcatccagc gcatgcccgg cggtgaagcc
     2161 ggccatgtcg tcgcggccgc gggtgtagag catggccacc accgaggact tcagcggcgc
     2221 gtactcgtag tcctcctgcc aggccaggcc cgaggcccag ttgagcaggt ggcccatttt
     2281 cacgtccggg tgcgcggcga acggcgggta gtgctgggcc accgcgtcgt ccagcttgaa
     2341 gtggccctcg ccgtaagcta cgccgagcac gctggcgaac aggctcttgc tgatcgacca
     2401 ggtcaggtgc ggagtctgcg ccgtggtggg cgcggcgtag cgctcgtgga cgatgacgcc
     2461 gtcgcggatc accagcagcg catcgctgcg cacgccggtg cgggcggcat cgtcgcgcgg
     2521 ggcgaaggcg taatcgtcca gcgcctgcac ggccgggctg gcggccgccg gctggctgct
     2581 ccactcgggg atcggcc
//
LOCUS       DATIHC010000738         1643 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_32531, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000738 DATIHC010000000
VERSION     DATIHC010000738.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1643
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32531"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..314)
                     /locus_tag="VLF16_12220"
     CDS             complement(<1..314)
                     /locus_tag="VLF16_12220"
                     /EC_number="1.10.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0070069 - cytochrome complex [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0019646 - aerobic electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HSX71684.1"
                     /translation="MFGLDALELARIQFAFTVSFHIVFPAISIGLASYLAVLEGLWLK
                     TSKEVYYDLYRFWLQIFAVTFGMGVVSGVVMSYQFGTNWSQLSTAAGSIMGPLLTYEV
                     LTA"
     gene            482..988
                     /locus_tag="VLF16_12225"
     CDS             482..988
                     /locus_tag="VLF16_12225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016492353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSX71685.1"
                     /translation="MSSPSDPRSADGQFESHSAELLRFLTRRVKCAELAADLRQETWL
                     RFRRRESGEEIGNLRAFLYRIARNLIIDHHRQQEARPVEEEISPELVSTQPGPERAAS
                     DAERLEQLQRVVQALPPHLRQALLWNRLDGMTQREIGQRLGVSESMAGRYILKALEHC
                     QQQMDSSS"
     gene            985..>1643
                     /locus_tag="VLF16_12230"
     CDS             985..>1643
                     /locus_tag="VLF16_12230"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HSX71686.1"
                     /translation="MTHPALLAQAREWQVLLHSGRATEADRAAADAWRRAAPEHDRAL
                     REVEGLWALLGQIERPAQPPSVRVVRRPLRWAVPLASAAAVLLALWLPRGTWVGLYAD
                     ISTGPGEVRELRLEDGSLLTLNGDSALDWQFVDGRREIRLYRGEADFQVAHDPRRPFT
                     VSAGEAHIRVTGTRFDVRLDPEGADLAVSEGRVLASSEGREPLPVVAGQQVQWRGGEL
                     QA"
BASE COUNT          255 a          558 c          568 g          262 t
ORIGIN      
        1 gcggtgagca cctcgtaggt cagcagcggc cccatgatgc tgccggccgc cgtggacagc
       61 tggctccagt tggtgccgaa ctggtagctc atcaccaccc cggagaccac gcccatgccg
      121 aaggtcacgg cgaagatctg cagccagaag cggtagaggt cgtagtagac ctccttgctg
      181 gtcttcagcc acaggccttc gagcaccgcc aggtaactgg ccaggccgat gctgatggcg
      241 gggaagacga tgtggaagga gacggtgaag gcgaactgga ttcgcgccag ttccaatgca
      301 tccaggccga acatgagagg ccactccgga aattgatctg ggtcaatatt ccgctctccg
      361 ccgctgcgct cgtagctggc ggattgtcgc atcgggcaga atgtcgcagg tctggcggca
      421 attgaaagtc attatcagtt gatatatgtt cgcggctttc ccgccaaccc gcgccgccat
      481 cttgtcctcg ccttccgatc cccgctctgc cgacggtcag ttcgagagcc attccgccga
      541 actgctgcgt ttcctcacgc ggcgggtcaa gtgcgcggaa ctggcggccg acctgcgcca
      601 ggaaacctgg ctgcgctttc gccggcgcga gtcgggcgag gagatcggca acctgcgcgc
      661 cttcctctac cgcatcgccc gtaacctgat catcgaccac catcgccagc aggaggcgcg
      721 gccggtcgag gaagagattt cccccgagct ggtcagcacc cagcccggcc ccgagcgcgc
      781 tgccagcgat gccgaacgcc tcgagcagct gcagcgcgtg gtccaggccc tgccgccgca
      841 cttgcgccag gcgttgctgt ggaatcgcct ggacggcatg acccagcgcg agatcggcca
      901 gcgcctgggt gtctcggaaa gcatggccgg acgctatatc ctcaaggccc tcgaacactg
      961 tcagcagcag atggattctt cttcgtgacc caccccgcgc ttctcgccca ggcccgcgaa
     1021 tggcaggtgc tcctgcattc cgggcgcgcc accgaggccg accgcgccgc cgcggacgcc
     1081 tggcgccgtg ccgcgcccga gcacgaccgg gcgttgcgcg aggtggaggg gctatgggcg
     1141 ctgctcgggc agatcgagcg cccggcgcag ccgccatcgg tgcgggtggt gcggcgaccg
     1201 ctgcgctggg cggtcccgct ggccagcgcg gcggcggtgc tgctcgcgtt gtggctgccg
     1261 cgcggcacct gggtcggcct gtatgccgac atcagcaccg gaccgggcga ggtgcgcgag
     1321 ctgcgcctgg aggacggctc gctgctcacc ctcaacggcg attcggcgct ggactggcag
     1381 ttcgtcgacg gtcgccgcga aatccggctg taccgcggcg aggcggattt ccaggtggct
     1441 cacgacccac ggcggccctt cacggtcagc gccggcgagg cgcatatccg cgtcaccggc
     1501 acccgtttcg atgtacgcct ggaccccgag ggcgccgacc tggcggtgag tgaagggcgg
     1561 gtgctggcct ccagcgaggg ccgcgagccg ctgccggtgg tggccggcca gcaggtgcag
     1621 tggcgcggcg gcgagctgca ggc
//
LOCUS       DATIHC010000739         2373 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4357, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000739 DATIHC010000000
VERSION     DATIHC010000739.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2373)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2373)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2373
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4357"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            26..1573
                     /locus_tag="VLF16_12235"
     CDS             26..1573
                     /locus_tag="VLF16_12235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014591856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HSX71687.1"
                     /translation="MNLGKIISRSALYWPEHEALVDARQRITFAQLERRTNRLASGLQ
                     ALGLAEGAHVAILALNRVELAEAEIAFYKSAMVKVPINARLSLDEIIQVLNDSHSQAV
                     IADGRFAAALHARRGETPRLRWIVSLDDDAGDASYAAVLERGSEAPVQADPADDALAV
                     LHYTSGSSGVLKAAMLSFGNRKALIRKSIASPTRRATPGDVMAHVGPITHASGMQIMP
                     LLAVGACNLLLERYDDRLLLETIERERVTRLFLVPAMINRLVNFPEVERFDLSSLRLV
                     MYGAAPMAPALVKRAIAVFGPILAQGYGAGETCSLVTVLTEQDHLIEGEDQGRLASCG
                     RCYFETDLRVVNDAFEDVKPGEIGEIVVKGPDIMQGYWQAPELTAEVMRDGYYLTGDL
                     ATVDERGYVFIVDRKKEMIISGGFNVYPTEVEQVLYTLPQIFEAAVVGVPDEQWGEAI
                     RAVVVLKPGETLSAEDIIEHCGRSLAGFKKPRAVDFVQELPKNPNGKVVRRLIREAYW
                     QNSERRI"
     gene            1584..>2373
                     /locus_tag="VLF16_12240"
     CDS             1584..>2373
                     /locus_tag="VLF16_12240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015269469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HSX71688.1"
                     /translation="MIQPSEKAARLIEGINAFARDELAPLAKREGITWGEPVAKPLLR
                     DIWRRSCELGFYNAMLPEALGGAGLGVADLCALKEAAVLTGSPLAPHILGELSGPPRV
                     GHLFKVANDYQVENFLGPICRAEKAVCFALTEAEAGSDAAALGTEARLDGDHYVLNGA
                     KRYISGAPYADLAVLLAVTTPGRGPKGISAFFVDLHAEGVSVDSDYSVMSGGGAHGNI
                     LLKDVRVPVQSRIGDEGQGFKLAMGRITLNRLLHCPTMLGMAGLA"
BASE COUNT          393 a          854 c          777 g          349 t
ORIGIN      
        1 ttgtcctgcc gatgagaaca ataaagtgaa cctaggaaag atcatcagcc gcagcgcgct
       61 gtactggccc gagcacgaag ctctggtcga cgcccgccaa cgcatcacct tcgctcagct
      121 cgagcgccgc accaaccgcc tggcctctgg cctgcaggcc ctcggcctgg cagagggcgc
      181 ccacgtggcg atcctcgccc tcaaccgcgt ggaactggcc gaggcggaaa tcgccttcta
      241 caagtcggcc atggtcaagg tgccgatcaa cgcgcgcctg tccctggacg agatcatcca
      301 ggtgctcaac gactcccaca gccaggcggt gatcgccgac ggccgcttcg ccgccgccct
      361 gcatgcgcgc cgcggcgaga ctccacgcct gcgctggatc gtctccctcg acgacgatgc
      421 cggcgacgcc agctacgccg ccgtgctgga acgcggcagc gaggcgccgg tacaggccga
      481 cccggccgac gacgccctcg cggtgctgca ctacacctcc ggcagctccg gcgtgctcaa
      541 ggccgccatg ctcagcttcg gcaaccgcaa ggcgctgatc cgcaagagca tcgccagccc
      601 gacccgccgc gccacacccg gtgacgtgat ggcccatgtc ggaccgatca cccacgccag
      661 cggcatgcag atcatgccgc tgctggccgt cggcgcctgc aacctactgc tggaacgcta
      721 cgacgatcgc ctgctactgg aaaccatcga gcgcgagcgc gttacccgcc tgttcctggt
      781 accggcgatg atcaatcgcc tggtgaattt ccccgaggtg gagcgcttcg atctgtccag
      841 cctgcgcctg gtgatgtacg gtgccgcgcc catggcgccg gccctggtca agcgcgccat
      901 cgccgtgttc ggcccgatcc tggcccaggg ctacggcgcc ggcgagacct gctcgctggt
      961 caccgtgctc accgagcagg accatctgat cgagggcgag gaccagggcc gcctggcctc
     1021 ctgcggccgc tgctatttcg agaccgacct gcgcgtggtc aacgacgcct tcgaggacgt
     1081 gaagcccggc gagatcggcg agatcgtggt caagggcccg gacatcatgc agggctactg
     1141 gcaggcaccg gagctgaccg ccgaggtgat gcgcgacggc tactacctca ccggcgacct
     1201 ggccacggtg gacgagcgcg gctacgtgtt catcgtagac cgcaagaagg aaatgatcat
     1261 ctccggcggc ttcaacgttt accccaccga ggtggagcag gtgctctaca ccctgccgca
     1321 gatcttcgag gcggcggtgg tcggggtgcc cgacgagcag tggggcgagg cgatccgcgc
     1381 ggtggtggtg ctcaagccgg gcgagacgct cagcgccgag gacatcatcg agcattgcgg
     1441 gcgctcgctg gccggcttca agaagccgcg cgcggtggac ttcgtccagg agctgccgaa
     1501 gaaccccaat ggcaaggtcg tgcgtcgcct gatccgcgaa gcgtactggc agaacagcga
     1561 acgccgcatc tgaggagacg gacatgatcc agccaagtga aaaagccgcc cgcctgatcg
     1621 agggcatcaa cgccttcgcc cgtgacgaac tggccccgct ggccaagcgc gagggcatca
     1681 cctggggcga gccggtggcc aagccgctgc tgcgtgacat ctggcgccgc tcctgcgagc
     1741 tcggtttcta caacgccatg ctgccggagg ccctcggcgg tgccggcctg ggcgtggccg
     1801 acctgtgcgc gctgaaggag gcggcggtgc tcaccggctc accgctggcg ccgcacatcc
     1861 tcggcgagct gtccggcccg ccgcgggtcg gccacctgtt caaggtcgcc aacgactacc
     1921 aggtggagaa cttcctgggg ccgatctgcc gcgccgagaa ggccgtgtgc ttcgccctca
     1981 ccgaggccga ggccggctcc gacgccgccg ccctcggcac cgaggcgcgc ctggacggcg
     2041 accactacgt gctcaacggc gccaagcgct acatctccgg cgcgccctat gccgacctcg
     2101 ccgtgctgct cgcggtcacc acccccggcc gcggcccgaa gggcatctcg gcgttcttcg
     2161 tcgacctgca tgccgagggc gtcagcgtcg acagcgacta ctcggtgatg tccggcggcg
     2221 gcgcccacgg caacatcctg ctcaaggacg tgcgcgtgcc ggtacagagc cgcatcggcg
     2281 acgagggcca gggcttcaag ctggccatgg ggcgcatcac cctcaaccgc ctgctgcact
     2341 gcccgaccat gctcggcatg gccggcctgg cgc
//
LOCUS       DATIHC010000740         1637 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4365, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000740 DATIHC010000000
VERSION     DATIHC010000740.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1637
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4365"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..564
                     /locus_tag="VLF16_12245"
     CDS             <1..564
                     /locus_tag="VLF16_12245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019818859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSX71689.1"
                     /translation="AIREMLKPHVAEPAPLAADPLETAQALFAEERFGEAETLLKQVL
                     TENNENAAALILYARCLAERGELGEAEAVLGAVKGDEHKQALAGAKAQLTFLRQAADL
                     PDGAELKSRLAQDPNDDEATYQLAIQQLARQQYEAALDGLLRLFVRNRSYAEGIAHKT
                     LLQVFDLLGNDHPLVTLYRRKLYQAIY"
     gene            564..998
                     /locus_tag="VLF16_12250"
     CDS             564..998
                     /locus_tag="VLF16_12250"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004579288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HSX71690.1"
                     /translation="MTPFRLLLRVRYGECDAQQVVFNARYGDYVDVAATEFYRAVFGS
                     YQSLLEQNLDSQVVRMAIDWSAPARFDDVLQLEVSTLRLGNSSFALEVDIRRQTDQAA
                     IARAEVTYVMVDAKAFSKTAIPEAIRVQLEHGAPGVTVNQAG"
     gene            complement(1038..1379)
                     /locus_tag="VLF16_12255"
     CDS             complement(1038..1379)
                     /locus_tag="VLF16_12255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71691.1"
                     /translation="MLRIKGRVGDWPVDLTVEMDAEDWAQLAAHLPVESSPAPARVAP
                     AANPADGLWPMALELLQRAGSMEGPQLLGELAALAGGEAAGKRLLVRLRHSPQVQVES
                     SADAPLYRWIG"
     gene            1490..>1637
                     /locus_tag="VLF16_12260"
     CDS             1490..>1637
                     /locus_tag="VLF16_12260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019439173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2796 domain-containing protein"
                     /protein_id="HSX71692.1"
                     /translation="MRRTLLALPLALLPLAIAHADSHEHVHDHAHDHGHEEHGSLGKH
                     EHGVA"
BASE COUNT          279 a          593 c          531 g          234 t
ORIGIN      
        1 gccatccgcg agatgctcaa gccgcatgtg gccgagccgg cgccgctggc cgccgacccg
       61 ctggagaccg cccaggcgct gttcgccgag gagcgcttcg gcgaggccga gaccctgctc
      121 aagcaggtgc tgaccgagaa caacgagaac gccgcggcgc tgattctcta cgcccgctgc
      181 ctggccgagc gcggcgagct gggcgaggcc gaggcggtgc tcggcgcggt caagggcgac
      241 gagcacaagc aggccctggc cggcgcgaag gcgcagctga ccttcctgcg ccaggctgcc
      301 gacctgccgg atggcgccga gctgaagagc cgcctggcgc aagacccgaa cgacgacgag
      361 gcgacctacc agctggccat ccagcagctg gcgcgccagc aatacgaggc ggcgctggac
      421 ggcctgctca ggctgttcgt gcgcaatcgc agctatgccg agggcatcgc ccacaagact
      481 ctgctgcagg tgttcgatct gctgggcaac gaccacccgc tggtgaccct gtaccgccgc
      541 aagctctatc aggcgatcta ctgatgacgc ccttccgcct gctgctgcgg gtgcgctacg
      601 gcgaatgcga cgcccagcag gtggtgttca acgcccgcta tggcgattac gtggacgtgg
      661 cggccaccga gttctatcgc gccgtgttcg gcagctacca gagcctgctg gagcagaacc
      721 tggacagcca ggtggtgcgc atggccatcg actggagcgc gccggcgcgc ttcgacgatg
      781 tgctgcaact ggaagtcagc accctgcgcc tgggcaacag ctccttcgcc ctggaggtgg
      841 acatccgccg ccagaccgac caggcggcca tcgcccgggc cgaagtcacc tacgtgatgg
      901 tcgatgccaa ggccttcagc aagacggcca ttcccgaggc cattcgcgtc cagctggagc
      961 atggtgcgcc gggcgtgacg gtgaaccagg ccggctaggg ctgttgccgt tgcgacgcca
     1021 gtcgcgatgc aacgcagcta gccgatccag cgatacagcg gcgcgtcggc gctgctttcc
     1081 acctgcacct gcgggctgtg acgcagccgc accagcaggc gcttgcccgc cgcctcgccg
     1141 ccggccagcg cggccagttc gccgagcagc tgcgggcctt ccatgctgcc ggcgcgctgc
     1201 agcagctcca gcgccatcgg ccacaggccg tccgcgggat tggcggcggg cgccacgcgc
     1261 gcaggcgccg gcgacgactc gaccggcaag tgagcggcca gctgggccca gtcctcggca
     1321 tccatctcca ccgtcaggtc caccggccag tcgccgaccc gccccttgat tcgcagcatt
     1381 tttgatcctc caagcatcag cagacatgct gccacgcgca ccgaggctgg ccaatcgcag
     1441 cggttaggtg ttacaacata acctaacgaa tatcatcgga gccctctcaa tgcgccgcac
     1501 cctgctcgcc ctgcccctcg ccctgttgcc cttggccatc gcccacgccg atagtcacga
     1561 acacgtgcat gaccacgctc acgaccacgg ccacgaggag cacggcagcc tcggcaagca
     1621 cgagcacggc gtcgcca
//
LOCUS       DATIHC010000741         1747 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_41961, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000741 DATIHC010000000
VERSION     DATIHC010000741.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1747
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41961"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..637
                     /locus_tag="VLF16_12265"
     CDS             <1..637
                     /locus_tag="VLF16_12265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSX71693.1"
                     /translation="LLVATEPLPASVWAEIGLERGQAFSEASRQVTYGQRSADDRLVF
                     GARGGYRFGGRLRSDFTLTEDERGLRRYLFGELFPQLRDVRLTHAWGGNLGMARRFHP
                     HMLRDTRNGIALSGGYGGEGVGASNLGGRTLAALILGQDNEMTRQPWVQADSGLERLA
                     GWEPEPCRWLGYNAIIRSFVHEDRVLADPHSAPWRRRLAQGVARLMEGFMK"
     gene            652..993
                     /locus_tag="VLF16_12270"
     CDS             652..993
                     /locus_tag="VLF16_12270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003248474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HSX71694.1"
                     /translation="MSIDHFKNTAELTLDDVNPVAVPLGEPHAVTRTHSVERADGVEA
                     GVWECSPGRWRRQIVQQEFCHFIAGRCTFTPDGGEPIEIRAGDALMMPANTTGVWDIQ
                     ESVRKTFVLIH"
     gene            1046..>1747
                     /locus_tag="VLF16_12275"
     CDS             1046..>1747
                     /locus_tag="VLF16_12275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017338764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     substrate-binding protein PotF"
                     /protein_id="HSX71695.1"
                     /translation="MLKKIIPLMLVASASQAADGVRIYNWTDYIAPDTLKNFEKASGL
                     SAQYDVYDSNETLDAKLMAGRSGYDVVFPSNHFMARQLQGGALKKLDRSKLTGWNNLD
                     PVLLKALETNDPGNQHGFPYLWGTTGIGYNVDKVKAVLGEGVAVDSWDLIFKPEHMAK
                     LAKCGVAILDNGPEMLPIALHQLGLPHHSQNLDDYKKAEALLMEMRENVRYFHSSKYV
                     GDLANGNICVAVGFSG"
BASE COUNT          311 a          634 c          560 g          242 t
ORIGIN      
        1 cctgctcgtc gccaccgagc cgctgccggc ttcggtctgg gccgagatcg gcctggagcg
       61 cggccaggcc ttcagcgagg ccagccgcca ggtcacctat ggccagcgca gcgccgacga
      121 ccgcctggtg ttcggcgccc gcggcggcta ccgcttcggc ggtcgcctgc gcagcgactt
      181 caccctcacc gaggacgagc gcgggctgcg ccgctacctg ttcggcgagc tgttcccgca
      241 gctgcgcgac gtgcgcctga cccatgcctg gggcggcaac ctgggcatgg cccggcgctt
      301 ccacccgcac atgctgcgcg acacgcgcaa cggcatcgcc ctgtccggcg gctacggcgg
      361 cgaaggcgtc ggcgccagca acctgggcgg tcgcaccctg gccgcactga tcctcggcca
      421 ggacaacgag atgacccgcc agccctgggt acaggccgat tccggcctgg agcgtctggc
      481 cggctgggag cccgagccgt gccgctggct cggctacaac gccatcatcc gcagcttcgt
      541 ccacgaggac cgggtgctgg ccgacccgca cagcgcgccc tggcgccgcc gcctggcgca
      601 gggcgtggcg aggctgatgg aaggtttcat gaaatgaccc tggagaatcc gatgagcatc
      661 gaccacttca agaacaccgc cgagctgacg ctggacgacg tcaacccggt ggccgtgccg
      721 ctcggcgagc cgcatgcggt gacccgcact cacagcgtcg agcgcgccga tggcgtcgag
      781 gccggcgtgt gggagtgcag cccgggccgc tggcgccggc agatcgtcca gcaggagttc
      841 tgccacttca tcgccggccg ctgcaccttc accccggacg gcggcgagcc gatcgagatc
      901 cgcgccggcg acgcgctgat gatgccggcc aacaccaccg gcgtgtggga catacaagaa
      961 tccgtccgca agaccttcgt gctgatccac tgatcggcgc agcccctgag ccactgccta
     1021 acaagaacaa tcaacgaggt aacccatgct gaagaaaatc atcccgctga tgctcgtcgc
     1081 atccgccagc caggccgccg acggcgtgcg catctacaac tggaccgact acatcgcgcc
     1141 ggacaccctg aagaacttcg agaaggccag cggcctcagc gcccagtacg acgtgtacga
     1201 cagcaacgag accctggacg ccaagctcat ggccggccgc tccggctacg acgtggtgtt
     1261 cccctccaac cacttcatgg cccggcagct ccagggcggc gccctgaaga agctcgaccg
     1321 cagcaagctg accggctgga acaacctcga cccggtgctg ctcaaggcgc tggaaaccaa
     1381 cgacccgggc aaccagcacg gcttccccta cctgtggggc accaccggca tcggctacaa
     1441 cgtcgacaag gtcaaggccg tgctgggcga gggcgtggcg gtggattcct gggacctgat
     1501 cttcaagccc gagcacatgg ccaagctggc caagtgcggc gtggccatcc tcgacaacgg
     1561 cccggagatg ctgcccatcg cgctgcacca gctgggcctg ccgcaccaca gccagaacct
     1621 cgacgactac aagaaggccg aggcgctgct gatggagatg cgcgagaacg tgcgctactt
     1681 ccactcctcc aagtacgtcg gcgacctggc caacggcaac atctgcgtgg ccgtgggttt
     1741 ctccggc
//
LOCUS       DATIHC010000742         1777 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34685, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000742 DATIHC010000000
VERSION     DATIHC010000742.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1777
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34685"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..185)
                     /locus_tag="VLF16_12280"
     CDS             complement(<1..185)
                     /locus_tag="VLF16_12280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71696.1"
                     /translation="MSWTSRYALALLPPAVLFGVWRLGVYSLTHFHCEGSLKQQVHCA
                     TAPFDLMPWLVASLFWSP"
     gene            complement(302..1684)
                     /locus_tag="VLF16_12285"
     CDS             complement(302..1684)
                     /locus_tag="VLF16_12285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016491979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1329 domain-containing protein"
                     /protein_id="HSX71697.1"
                     /translation="MFNHPFHRQGIVLALAAAASLYLGHAQAAVSEQMAAKLGTELTP
                     LGGEKAANADGSIPAWDGGLTKPPAGFVPGKHYVDPFPQDKPLFTITAQNVEQYRDKL
                     SPGQVALLKTYPQTLSFPVYQTRRTGAAPSWVYENTRKNATSAKLLDGGNGFGGAYGG
                     IPFPIPQSGVEAVWNHIARYRGTYLVRNLSEATVQANGSYNLSTFDQQVLFKYYIENG
                     KAADLDNIMFYYLAQARSPARIAGQAALVYETLDQVAQPRMAWAYVPGIRRVRRAPTL
                     AYDTPEDNSDSLMTVDDRDMFNGSPDRYEWKLVGKQEMYIPYNNYRILSPSIKYKDLI
                     QPGHIAPEQTRFELHRVWVVEGTLKDSARHIYSKRTFYLDEDSWQIAVADRYDGRGEL
                     WRVAMGYLTSFYDLPTIWTSIDTFHDLQARRYVVHKLENEESETLDFTQPLPSLDSFK
                     PAALKRLGSR"
BASE COUNT          278 a          532 c          642 g          325 t
ORIGIN      
        1 gggctccaga acaggctggc gaccagccag ggcatcaggt cgaaaggcgc ggtcgcgcaa
       61 tgcacctgct gcttgaggct gccctcgcag tggaaatggg tgagtgaata gacgccgagc
      121 cgccacacgc cgaagagcac ggcaggtggc agcagggcca gggcgtatcg gctcgtccat
      181 gacatggcga catccgtttc gagcgtgggc gggaaaagca gcatcgcgcg aatcgccccg
      241 ccctcccagc cccgcgcaat gaaaaacgcc gccccagggc ggcgtttttc cgaacaggcg
      301 gctagcggct gcccaggcgc ttcagcgcgg ccggcttgaa gctgtccagc gacggcagcg
      361 gctgagtgaa gtcgagcgtc tcgctctcct cgttctccag cttgtgaacc acgtagcggc
      421 gcgcctgcag gtcgtggaag gtgtcgatgg aggtccagat ggtcggcagg tcgtagaagc
      481 tggtcaggta gcccatcgcc acgcgccaca gctcgccacg accgtcgtaa cggtcggcga
      541 cggcgatctg ccagctgtcc tcgtcgaggt agaaggtgcg cttggaatag atgtgccgcg
      601 ccgagtcctt cagcgtgccc tcgacgaccc acacgcggtg cagctcgaag cgcgtctgct
      661 cgggcgcgat gtggccgggc tggatcaggt ccttgtattt gatcgacggg ctgaggatcc
      721 ggtagttgtt gtaggggatg tacatctcct gcttgccgac cagcttccac tcgtagcggt
      781 cgggcgagcc gttgaacatg tcgcggtcgt ccaccgtcat caggctgtcg gagttgtctt
      841 ccggggtgtc ataggcgagc gtcggcgcgc ggcgaacgcg gcggatgccc ggcacgtagg
      901 cccaggccat gcgcggctgg gcgacctggt cgagggtctc gtacaccagc gcggcctggc
      961 cggcgatgcg tgccgggctg cgggcctgcg ccaggtaata gaacatgatg ttgtccaggt
     1021 ccgcggcctt gccgttctcg atgtagtact tgaacagcac ctgctggtcg aaggtggaca
     1081 ggttgtaact gccgttggcc tgcacggtcg cctcggacag gttgcgcacc aggtaggtgc
     1141 cgcggtagcg ggcgatgtgg ttccacaccg cctccacgcc gctctgcgga atcgggaacg
     1201 ggatgccgcc ataggcgccg ccgaagccgt tgccgccgtc gagcagcttg gcgctggtgg
     1261 cgttcttgcg ggtgttctcg tagacccagc tcggcgccgc gccggtccgc cgggtctggt
     1321 agaccgggaa ggacagcgtc tgcgggtagg tcttcagcag cgccacctgg ccgggggaca
     1381 gcttgtcgcg gtactgctcg acgttctgcg cggtgatggt gaacagcggc ttgtcctgcg
     1441 ggaacggatc gacgtagtgc ttacccggta cgaagccggc cggcggcttg gtcaggccgc
     1501 catcccaggc gggaatgctg ccgtccgcgt tggcggcctt ctcgccgccc agcggggtga
     1561 gttcggtgcc cagcttggcg gccatctgct cggagacggc ggcctgggcg tggcccaagt
     1621 agagggatgc ggccgccgcg agcgcgagga cgatgccctg acggtggaaa ggatggttga
     1681 acatggttgg cctctttttc ttggaattcg gttgcatcgt cagaacgagt actggacgtc
     1741 gaagctgacg ttgtcgcggt cgcggatgag gttgttc
//
LOCUS       DATIHC010000743         2786 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13634, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000743 DATIHC010000000
VERSION     DATIHC010000743.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2786)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2786)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2786
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13634"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(83..484)
                     /locus_tag="VLF16_12290"
     CDS             complement(83..484)
                     /locus_tag="VLF16_12290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HSX71698.1"
                     /translation="MRAGVISWQLAQTFWVGGLWLLHFVMLPGLERMGLAPLLVEEVK
                     NTLSPLLIGFAAFCALVQGMVLVQAEGLRSLWRDLRGQLLLLVVGMAVVFFVVRQYQP
                     DAARWLLFNYLVVALCGLVLILQPLPEQRSE"
     gene            complement(495..971)
                     /gene="greA"
                     /locus_tag="VLF16_12295"
     CDS             complement(495..971)
                     /gene="greA"
                     /locus_tag="VLF16_12295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HSX71699.1"
                     /translation="MNKYPMTVQGARALEEELAHLTKVVRPKLSQDIGEARELGDLKE
                     NAEYHAAREQQGMVEARIRDIEGRLQHAVVIDVTAIAHTGKVIFGTTVDIANVETDES
                     VTYQIVGEDEADIKVGKLSVSSPIARALVGKEEGDVVAVKTPSGLVEYEIVEVRHL"
     gene            complement(968..>2786)
                     /gene="carB"
                     /locus_tag="VLF16_12300"
     CDS             complement(968..>2786)
                     /gene="carB"
                     /locus_tag="VLF16_12300"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003095207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HSX71700.1"
                     /translation="LIAEEARVREEGLSSLDAARMRELKRKGFSDARLAKLLGVSEKS
                     LRAHRHKLKVLPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSSREKIMILGGGPNR
                     IGQGIEFDYCCVHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEI
                     VRVEQPKGVIVQYGGQTPLKICRALEEAGVPIIGTSPEAIDRAEDRERFQQMVQRLGL
                     RQPANATARSEDEALALSKNIGYPMVVRPSYVLGGRAMEIVYQEEELKRYMREAVKVS
                     NDSPVLLDRFLNCAIEVDVDAVCDGETVVIGAIMQHIEQAGVHSGDSACSLPPYSLPK
                     HIQDEIREQVKKMALELGVVGLMNVQMAVQGEDIYVIEVNPRASRTVPFVSKCVGESL
                     AKVAARVMAGKSLAEAGYAEEVIPPYFSVKEAVFPFAKFPGVDPILGPEMKSTGEVMG
                     VGDTFGEAFSKAQLGASEILPNTGCAFISVREDDKEQAVQVARDLVELGFEVVATAGT
                     AKVIEAAGLPVRRVNKVTEGRPHVVDMIKNDEVTLIINTTEGRQSIADSYSIRRNALQ
                     HKIYCTTTIAAGQAICEALKFGPEKTVRRLQDLHAGIKA"
BASE COUNT          472 a          932 c          868 g          514 t
ORIGIN      
        1 gcgaaaacag agctgccgaa gcgagtcatg cgaatcggca gctgaggacg ctaagctccc
       61 gcctcccgcc ccgcgattct gcttattcgc tgcgctgctc gggcagcggc tgcaggatca
      121 gcaccagccc gcacagggcg accaccagat aattgaatag cagccagcgg gcggcgtctg
      181 gctggtattg gcgcaccacg aagaacacca cagccatccc caccaccaac agcagcagct
      241 gtccgcgcag gtcacgccac agactgcgca ggccttccgc ctgcaccagc accatgccct
      301 gcaccagcgc gcagaaggcg gcgaaaccga tcagcaatgg actgagggtg ttcttgacct
      361 cctcgacgag cagcggcgcc agtcccatcc tctccagccc cggcagcatg acgaagtgca
      421 gcagccacag gccgccaacc cagaaggtct gggccagctg ccagctgatg actccggctc
      481 gcagcgggcc acgcttaaag atgacgaacc tcgacgatct cgtactcgac caggccgctg
      541 ggtgtcttca ccgccacgac atcgccctct tccttgccca ccagggcgcg ggcgataggc
      601 gagctgaccg agagcttgcc gactttgata tcggcctcgt cctcgcccac gatctgatag
      661 gtcacgctct cgtcggtctc gacattggcg atatccacgg tggtaccgaa gatcaccttg
      721 ccggtgtgag cgatggcggt gacgtcgatc accaccgcgt gctgcaggcg gccctcgatg
      781 tcacggatac gcgcctcgac catgccctgc tgctcgcgag cggcgtggta ttcggcattt
      841 tccttgaggt cgcccagttc gcgtgcctcg ccgatgtcct ggctgagctt gggacgcacc
      901 accttggtca gatgggccag ctcttcctcc agggcgcgag cgccctggac ggtcatgggg
      961 tacttgttca tgccttgatt cctgcatgca gatcctgcag ccggcgcacg gtcttctctg
     1021 gaccgaactt gagcgcctca cagatcgcct gaccggccgc gatggtggtg gtgcagtaga
     1081 tcttgtgctg cagagcgtta cgacggatgg aataggagtc agcgatggac tgacggcctt
     1141 cggtggtgtt gatgatcagg gtgacttcgt cattcttgat catgtcaacg acgtgcgggc
     1201 ggccctcggt caccttgttc acgcgacgca ccggcagacc cgccgcctcg atcaccttgg
     1261 cggtgcccgc ggtggcgacg acctcgaagc ccagctcgac cagatcgcgc gcgacctgaa
     1321 ccgcctgctc cttgtcgtcc tcgcgcacgc tgatgaacgc gcagccggtg ttcggcagga
     1381 tctcgctggc gcccagctgc gccttggaga aggcctcgcc gaaggtatcg cccacgccca
     1441 tgacctcacc ggtggacttc atctccgggc cgaggatggg gtcgacgccg gggaacttgg
     1501 cgaacgggaa caccgcttcc ttgacgctga agtacggcgg aatcacttcc tcggcgtaac
     1561 cggcctcggc cagcgacttg ccggccatga cacgggccgc caccttggcc agcgactcgc
     1621 cgacgcactt ggagacgaac ggcacggtac gcgaggcgcg cgggttgacc tcgatgacgt
     1681 agatgtcttc gccctgcacg gccatctgca cgttcatcag gccgaccacg ccgagctcca
     1741 aggccatttt tttgacctgc tcgcggatct cgtcctggat gtgcttgggc agcgagtacg
     1801 gcggcagcga gcaagccgag tcaccggagt gcacaccggc ctgttcgatg tgctgcatga
     1861 tcgcaccgat caccacggtc tcgccgtcgc acaccgcatc cacgtccacc tcgatggcgc
     1921 agttgaggaa gcgatccagc agcaccgggc tgtcgttgga caccttcacc gcttcgcgca
     1981 tgtagcgctt gagctcttct tcctggtaga cgatttccat cgcgcggccg cccagcacgt
     2041 aggacggacg cacgaccatc gggtaaccga tgttcttcga cagagccagg gcctcgtctt
     2101 cgctgcgcgc ggtggcgttg gccggctggc gcaggccgag gcgctgcacc atctgctgga
     2161 agcgctcgcg gtcttcggcg cggtcgatgg cctcggggct ggtaccgatg atcggcacac
     2221 ccgcctcttc cagggcgcgg cagatcttca gcggggtctg accgccgtac tgcacgatca
     2281 cgcccttggg ctgctcgaca cggacgatct ccagcacgtc ttccagggtc accggctcga
     2341 aatacaggcg gtcggaggtg tcgtagtcgg tggagacggt ttccgggttg cagttgacca
     2401 tgatggtctc gtacccgtct tcacgcatgg ccagcgccgc gtgcacgcag cagtagtcga
     2461 actcgatgcc ctggccgatg cggttgggcc cgccgccgag gatcatgatc ttctcgcggc
     2521 tcgacggatt agcctcgcac tcttcctcgt aggtcgagta catgtaggcg gtgtcggtgg
     2581 cgaattccgc ggcgcaggtg tccacgcgct tgtacaccgg cagcaccttg agcttgtggc
     2641 gatgggcgcg caggctcttc tcggaaacgc cgagcagctt ggccaggcgc gcatcggaga
     2701 agcccttgcg cttcagctcg cgcatgcgcg ccgcgtccag cgatgagagc ccctcttcgc
     2761 gtacacgtgc ttcctcggcg atgagg
//
LOCUS       DATIHC010000744         2796 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11336, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000744 DATIHC010000000
VERSION     DATIHC010000744.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2796
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11336"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..318)
                     /locus_tag="VLF16_12305"
     CDS             complement(<1..318)
                     /locus_tag="VLF16_12305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71701.1"
                     /translation="MPQARALMFALLPLFAGCQLFDVYQAPAPVTPAVRLQGELTLEQ
                     GRLLLQPCGEKRRLAVIADAASTLRRDAENLRADGQGSLFVDLLARPQASQRTDLDGE
                     LSLE"
     gene            436..1509
                     /locus_tag="VLF16_12310"
     CDS             436..1509
                     /locus_tag="VLF16_12310"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020295703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HSX71702.1"
                     /translation="MDRNTGSGLSFAKRIYLPRSIGLGIGFFCVAAALWPQRPDTWVW
                     ALLVFNGFLWPHLAFQLARLSATPFKAERRNLLVDSVFGGFWAAAMQFNVLPTVTILA
                     MMAMNNIAAGGARFFAKGCLAMLAGMALAAAVFGPGFAPETNMLQLYACLPMLILYPL
                     ALGWVSYRLSIQLAEHKQALRAASRTDSLTRLFNHGYWKDLLQLEFTKCRGGQQRGTV
                     ALIDLDHFKDINDRHGHLVGDSVLRLLSERLVLSLRQEDMAGRYGGDEFCVILPNTPP
                     VLAGEVMERLRQELGEVRSPLAPELRVTLSIGLAGYSPFHLDATQWLQAADQALYQAK
                     QRGRDQVVTACDAPPGNGEAANA"
     gene            1569..2210
                     /locus_tag="VLF16_12315"
     CDS             1569..2210
                     /locus_tag="VLF16_12315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017360704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF480 domain-containing protein"
                     /protein_id="HSX71703.1"
                     /translation="MSSVTEGLDPLNAAEVRILGCLIEKQATTPETYPLTLNSLVLAC
                     NQKTSREPLMNLTEGQVGQALRALEGRGMTRLVMGGRADRWEHRVDKALELVKPQQAL
                     LGLLFLRGPQTISELLTRSNRLYAFEDAAEVQHQLERLIGRSLALLLPRQSGQREDRY
                     MHQLGEAADLEALLAARQVDAPPRAVADDSRITELEARIAALEERLARLEGQP"
     gene            2207..2509
                     /locus_tag="VLF16_12320"
     CDS             2207..2509
                     /locus_tag="VLF16_12320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014860945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5629 family protein"
                     /protein_id="HSX71704.1"
                     /translation="MSLLDDLRGADMLLIDGLHAWQFELREQAEGDQPQLIIECMDGR
                     TRRVWSFAAAAVAAAVAAGEAGSWRLRGAEGEHELVCLGAISADNDDQADEPDEAD"
     gene            2513..>2796
                     /locus_tag="VLF16_12325"
     CDS             2513..>2796
                     /locus_tag="VLF16_12325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003086382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 family protein"
                     /protein_id="HSX71705.1"
                     /translation="MIRCKRVYAPAAADDGRRVLVDRLWPRGCRKESLALDAWLKDVA
                     PSEALRKDFCHDPALFDEFRRRYRLELAGHPEYWQGLLGMAEQGNLTLLFA"
BASE COUNT          417 a          999 c          961 g          419 t
ORIGIN      
        1 ctccaggctc agctcgccat ccaggtccgt ccgctggctg gcttgcggcc gggcgagcag
       61 gtcgacgaac aggctgccct gcccatcggc ccgcaggttc tcggcgtcgc ggcgcagggt
      121 gctggcggca tcggcgatca ccgccaggcg acgcttctcg ccgcacggct gcagcagcag
      181 tcgaccctgc tccagggtca gctcgccctg caggcgcacg gcgggcgtca ccggcgcggg
      241 ggcttggtac acgtcgaaca gctggcagcc ggcgaacagc ggcaacaggg cgaacatcag
      301 ggcgcgagct tggggcatgg ggctctcctt gcgaaagcgg ccacgttacc cagcgcaggc
      361 cgccagctca agcgccgggc ttgtatagtc ccgcgcgggc ggccatcctt cgcgcacgac
      421 gttccgagtg tgaacatgga tagaaacacc ggctccggcc tttccttcgc caaacgcatc
      481 tacctgcccc gcagtatcgg tctgggcatc ggcttcttct gtgtcgccgc ggcgctctgg
      541 ccgcaacggc cggacacctg ggtctgggcc ctgctggtgt tcaacggctt cctctggccg
      601 cacctggcct tccagctcgc tcgcctgtcc gccacgccgt tcaaggcgga gcgccgcaac
      661 ctgctggtcg actcggtgtt cggcggcttc tgggccgcgg ccatgcagtt caacgtgctg
      721 ccgaccgtga ccatcctggc gatgatggcg atgaacaaca tcgccgccgg cggcgcgcgc
      781 ttcttcgcca agggctgcct ggccatgctc gcgggcatgg ccctggccgc ggcggtgttc
      841 ggtcccggct tcgcccccga gaccaacatg ctgcagctct acgcctgcct gccgatgctg
      901 atcctctatc cgctggcgct cggctgggtc agctaccgcc tgagcatcca gctggccgag
      961 cacaagcagg cgctgcgcgc cgccagccgc accgacagcc tgacccggct gttcaaccac
     1021 ggctactgga aggacctgct gcagctcgag ttcaccaagt gccgcggcgg ccagcagcgc
     1081 ggcaccgtgg cgctgatcga cctggatcac ttcaaggaca tcaacgaccg ccacggccat
     1141 ctggtcggcg acagcgtgct gcgcctgctc agcgagcgcc tggtactgag cctgcgccag
     1201 gaggacatgg ccgggcgtta cggcggcgac gagttctgcg tgattttgcc caacacgccc
     1261 ccggtgctcg ccggcgaggt gatggagcgc ctgcgccagg agctcggcga ggtgcgcagc
     1321 ccgctggcgc ctgagctgcg cgtcaccctg agcatcggtc tggccggcta cagcccgttc
     1381 catctggacg ccacccagtg gctgcaggct gccgaccagg cgttgtacca ggccaagcag
     1441 cgcggccgcg accaggtggt gacggcctgc gatgcgcccc ccggcaatgg cgaggcggcg
     1501 aacgcctgag ttcccaggcc acgccacccg tggcaggcta gggcctttgc caccccacgg
     1561 aaatgcccat gtccagcgtc accgaaggcc tcgatccgct caacgccgcc gaagtccgca
     1621 tcctcggctg cctgatcgag aagcaggcca ccaccccgga aacctacccg ctgaccctca
     1681 actccctggt cctggcgtgc aaccagaaga ccagccgcga gccgttgatg aacctcaccg
     1741 agggccaggt cggccaggcc ctgcgcgccc tcgagggccg cggtatgacg cgcctggtga
     1801 tgggcggtcg cgccgatcgc tgggagcacc gggtggacaa ggcgctggag ctggtcaagc
     1861 cgcagcaggc gctgctcggc ctgctgttcc tgcgtggccc gcagaccatc agcgagctgc
     1921 tcacccgcag caatcgcctg tacgcgttcg aggatgccgc ggaggtccag caccagctcg
     1981 agcgcctgat cggtcgcagc ctggcgctgc tgctgccgcg ccagagcggt cagcgcgagg
     2041 accgctacat gcatcagctg ggtgaggcgg ccgacctcga ggcgctgctc gcggcccgcc
     2101 aggtggacgc accgccccgc gccgtggccg acgattcgcg catcaccgag ctggaggcgc
     2161 gcatcgccgc cctggaagag cgcctggcgc gcctggaggg ccagccatga gtctgctcga
     2221 cgacctgcgc ggcgccgaca tgctgctgat cgacggtctg cacgcctggc agttcgagct
     2281 gcgcgagcag gccgagggcg accagccgca gctgatcatc gaatgcatgg atggccgcac
     2341 ccgccgcgtg tggagcttcg ccgcggctgc ggtggccgcc gccgtggcgg cgggcgaggc
     2401 cggcagctgg cgcctgcgtg gcgccgaggg cgagcatgaa ctggtgtgcc tcggcgcgat
     2461 cagcgccgac aacgatgatc aggccgatga gcctgacgag gccgactgag ccatgatccg
     2521 ctgcaagcgc gtctacgcgc cggcggctgc cgacgatggc cggcgcgtgc tggtcgaccg
     2581 cctgtggccg cgaggctgca ggaaggagag cctggcgctg gatgcctggc tcaaggacgt
     2641 tgcgccgtcg gaagcgctgc gcaaggactt ctgccacgat cccgcgctgt tcgacgaatt
     2701 ccgccgccgc taccggctcg agctggcggg gcatcccgaa tactggcagg gcctgctggg
     2761 catggcggaa cagggcaacc tgacgctgct gttcgc
//
LOCUS       DATIHC010000745         4678 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_6851, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000745 DATIHC010000000
VERSION     DATIHC010000745.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4678
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6851"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..85)
                     /locus_tag="VLF16_12330"
     CDS             complement(<1..85)
                     /locus_tag="VLF16_12330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HSX71706.1"
                     /translation="MSELNLSTDETRVSYGIGRQLGDQLRDN"
     gene            complement(196..690)
                     /locus_tag="VLF16_12335"
     CDS             complement(196..690)
                     /locus_tag="VLF16_12335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010489653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00645 family protein"
                     /protein_id="HSX71707.1"
                     /translation="MERFIENAMYASRWLLAPIYFGLSLGLLALVLKFFQEIFHILPN
                     VFAMAEADLILVILSLIDMALVGGLLVMVMISGYENFVSQLDIDEGKEKLSWLGKMDS
                     GSLKMKVAASIVAISSIHLLKIFMDAQNVNPDHLMWYVIIHMAFVVSAFAMGYLDKLT
                     KHDH"
     gene            complement(874..1215)
                     /locus_tag="VLF16_12340"
     CDS             complement(874..1215)
                     /locus_tag="VLF16_12340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003154374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71708.1"
                     /translation="MPRCLCLTRRCLGLTTRIECEIRPLAGQRGLWMLLCAAGMSGAQ
                     PSAIKAQGPFHGPLVAESVLDSIAECLAEQGYETCIEPRIWRLHLQAELRRLDGERHR
                     ELGGWQSRPES"
     gene            complement(1404..3854)
                     /locus_tag="VLF16_12345"
     CDS             complement(1404..3854)
                     /locus_tag="VLF16_12345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003241526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSX71709.1"
                     /translation="MPESFAASLRLAPDALTRPCAPDQFNFTTTDDLEPFRGVLGQER
                     AVEALQFGVAMPRPGYNVYVMGEPGTGRFSFVQRYLKAEAKRQATPVDRVYVNHFDEP
                     REPRALELPPGTAAEFVADIGHLIDNLLATFPAVFETPTFQQKKSAIDRVFNQRYDKA
                     LDLIEKLALEKEVALYRDSANIAFTPMRDGKALDEADFAQLPEVERERFHQDIALLEE
                     RLNEELASLPQWKRESSNSLRQLNEETITLALQPLLAPLSEKYAENAGVCAYLQAVQV
                     NLLKTVVDQLLDDKPDAQRREMLEDQYCPSLVVGHHVDGGAPVVFEPHPTYDNLFGRI
                     EYSTDQGALYTSYRQLRPGALHRANGGYLVVEAEKLLSEPFVWDALKRALHSRQLKME
                     SPLGDFGRIATVTLSPQVIPLQLKVIIIGSRQLYYTLQDLDSDFQEMFRVLVDFDEEI
                     PVAEDSLEQFAQLLKTRTSEEGMAPLSAAAVARLATYSARLAEHQGRLSARIGDLFQL
                     VSEADFVRQLAGDAVTDVGHIERALKAKSDRTGRVSARIIDDMLAGIILIDTAGEAIG
                     KCNGLTVLQVGDSAFGVPARISATVYPGGSGIVDIEREVSLGQSIHSKGMMIVTGFLG
                     SRYAQEFPLEISASIALEQSYGYVDGDSASLGEVCTLISALSRTPLKQCFAITGSINQ
                     FGEVQAVGGVNEKIEGFFRLCEARGLTGEQGVIIPHSNVSNLMLDERVLQAVRNGQFH
                     VCAVRHVDEALGLLLGEPAGAPNEQGHFPKGSVNARVVERLRGIAELGLEDDEKDKEP
                     KIKEVKTRAKPAAKPSGE"
     gene            4071..>4678
                     /locus_tag="VLF16_12350"
     CDS             4071..>4678
                     /locus_tag="VLF16_12350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004420169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008452 - RNA ligase activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HSX71710.1"
                     /translation="MHDSTAQLLEVAGGKPIKLWTRGVPVEEAARQQLINTARLPFIF
                     KHLAVMPDVHLGKGSTIGSVIPTVGAVIPAAVGVDIGCGMIAARTSLSAADLPDNLHG
                     LRSAIERAVPHGKTFGRRDQGAWSDVPAQADQAWKALAGRFRAITQKYPRLEKTNNRS
                     HLGTLGTGNHFIEVCLDEADRVWFMLHSGSRGVGNAIGSLFI"
BASE COUNT          813 a         1542 c         1554 g          769 t
ORIGIN      
        1 ggttgtcacg cagctggtcg cccagctggc ggccgatgcc atagctcaca cgggtttcgt
       61 cggtagacag gttgagttcg gacatcgccg tgctccagag gggtcgaaaa aggccggcca
      121 gactagcaca gccatccaca aacgaaaccg cccgggcgtc tcgcaacgac cgggcggcga
      181 taccgctcga ctgactcagt gatcgtgctt ggtcagcttg tccaggtagc ccatggcgaa
      241 ggccgaaacc acgaacgcca tgtggatgat cacgtaccac atcaggtgat cgggattaac
      301 gttctgcgca tccatgaaga tcttcagcag gtggatcgag gagatggcca cgatcgaggc
      361 cgccaccttc atcttcaacg agccggagtc catcttgccc agccagctga gcttctcctt
      421 gccctcgtcg atatccagtt gggacacgaa gttctcgtag ccggagatca tcaccatcac
      481 cagcaggccg ccgaccagcg ccatgtcgat cagcgacagg atcaccagga tcagatcggc
      541 ctccgccatg gcgaagacgt tcggcaggat gtggaagatc tcttggaaga acttcagcac
      601 cagcgccagc agacccagcg acaggccgaa gtagatggga gccagcagcc agcgcgaggc
      661 gtacatcgcg ttctcgataa agcgttccat gggtcctcgc cataaggggt aaaaactggc
      721 ggcgagtata cccagccagg catgacgggc aaggcgacaa gcgttgcggc ttttttatcc
      781 ccgcttactg tggataacct tgtgggcagg cgcgggacgg atggccgcac gccaggaatc
      841 gcacgcacct gaaacggatt gggcaaaaag cgctcagctc tccggccggg actgccagcc
      901 gccgagttca cggtgacgct cgccatcgag acgacgcagt tccgcctgca gatgcaggcg
      961 ccagatcctc ggttcgatgc aagtctcgta gccttgctcg gcgagacact cggcgatcga
     1021 atcgagcacc gattcggcca ccaaaggccc gtggaatggg ccctgcgcct tgatcgccga
     1081 aggttgcgcg ccggacatgc cggccgcgca gagcagcatc cacaaccccc gctgaccggc
     1141 cagtggacgg atctcgcact cgatgcgggt cgtcaggccg aggcaccgac gggtgagaca
     1201 gaggcagcgc ggcatggcgg cgatcctcgc agggtctgac ctgcagccta caccccggcg
     1261 cgccgcttcg ggaaggcaaa gttatccccg tgcactgtgg ataactctgt ggagagaacg
     1321 ggggaaaatc ccctccggcg aggcccgtcg cgggcgccgc cggaatgcgc aatgactgac
     1381 cagttgtcgc ccgaccgtgg gcgtcattct ccggacggtt ttgccgccgg cttggcgcgg
     1441 gtcttcactt ccttgatctt cggttccttg tccttctcgt catcctccag gcccagctcg
     1501 gcaatgccgc gcagacgctc caccacccgc gcattgacgc tgcccttggg gaagtggccc
     1561 tgctcgttcg gcgcgccggc cggctcgccc agcagcaggc cgagcgcctc gtccacatgg
     1621 cgtaccgcgc agacgtggaa ctggccgttg cgcacggcct gcagcacgcg ctcgtcgagc
     1681 atcaggttgc tgacgttgga atgcgggatg atcacaccct gctcaccggt caggccacgc
     1741 gcctcgcaga ggcggaagaa gccctcgatc ttctcgttga cgccaccgac cgcctgcacc
     1801 tcgccgaact ggttgatcga gccggtgatg gcgaagcact gcttgagcgg ggtgcgcgag
     1861 agggccgaga tcagggtgca gacctcgccc agcgaggcgc tgtcgccgtc gacgtagccg
     1921 tacgattgct ccagcgcgat gctcgcggaa atctccaggg gaaattcctg ggcgtagcgg
     1981 ctgccgagga agccggtgac gatcatcatc cccttggagt ggatcgactg gcccaggctg
     2041 acctcgcgct cgatatcgac gatgccgctg ccgcccgggt agacggtagc ggaaatgcgc
     2101 gccggcacgc cgaaggccga gtcgcccacc tgcagcacgg tcaggccgtt gcatttgccg
     2161 atggcctcgc cggccgtgtc gatcaggatg atgccggcca gcatgtcatc gatgatccgc
     2221 gccgagacgc gcccggtgcg gtcggacttg gccttgagtg cgcgctcgat gtggccgacg
     2281 tcggtcaccg catcaccggc cagctggcgc acgaaatccg cctcgctgac cagctggaac
     2341 agatcgccga tccgcgccga cagccggccc tggtgctcgg ccaggcgtgc gctgtaggtc
     2401 gccaggcgcg ccaccgcggc ggcgctcagc ggcgccatgc cctcctccga ggtgcgcgtc
     2461 ttcagcagct gagcgaactg ttcgaggctg tcctcggcga cggggatctc ctcgtcgaag
     2521 tcgaccagca cgcggaacat ctcctggaag tcggaatcca ggtcctgcag cgtgtagtag
     2581 agctgccgcg aaccgatgat gatcaccttg agctgcagcg ggatcacctg cgggctcagc
     2641 gtcacggtgg cgatgcggcc gaaatcgccc agtggcgatt ccatcttcag ctggcgcgaa
     2701 tgcagcgcgc gcttgagcgc gtcccagacg aagggttcgc tcagcagctt ttccgcctcc
     2761 accaccagat acccaccgtt ggcccggtgc agcgcgcccg ggcgcagctg gcggtagctg
     2821 gtgtagagcg cgccctggtc ggtgctgtat tcgatgcggc cgaacaggtt gtcgtaggtc
     2881 gggtgcggct cgaacaccac cggcgcgccg ccgtcgacgt gatgaccgac caccaggctc
     2941 gggcagtact ggtcctcgag catctcgcgg cgctgggcat ccggcttgtc gtccagcagc
     3001 tggtcgacca ccgtcttcag caggttgacc tgcaccgcct gcaggtaggc gcagacgccg
     3061 gcattctcgg cgtacttttc cgagagcggc gcgagtagcg gctgcagggc cagggtgatg
     3121 gtctcttcgt tgagctggcg caggctgttg ctgctctcgc gcttccactg cggcaggctg
     3181 gccagctcct cgttgaggcg ctcctccagc agggcgatgt cctggtggaa gcgctcgcgc
     3241 tcgacttccg gcagttgggc gaagtccgcc tcgtccagcg ccttgccatc acgcatcggg
     3301 gtgaaggcga tgttggcact gtcgcggtac agcgccacct ccttttccag cgcaagcttc
     3361 tcgatcaggt cgagggcctt gtcgtagcgc tggttgaaca cgcggtcgat ggcgctcttc
     3421 ttctgctgga aggtcggcgt ctcgaagacc gccgggaacg tggccagcag gttgtcgatc
     3481 aggtggccga tgtcggcgac gaactcggcc gcggtgccgg gcggcagttc cagcgcgcga
     3541 ggctcgcgcg gctcgtcgaa atggttgacg tagacccggt ccaccggcgt ggcctggcgc
     3601 ttggcctccg ccttgaggta gcgctgcacg aaggagaagc gcccggtacc cggctcgccc
     3661 atgacgtaca cgttgtagcc cgggcgcggc atggccacgc cgaactgcag cgcctcgacg
     3721 gcgcgctcct ggccgagcac gccgcggaat ggctcgagat cgtcggtggt ggtgaagttg
     3781 aactggtcgg gggcgcaggg acgggtcagg gcatcgggcg ccaggcgcag gctggcagca
     3841 aaggattcag gcatcggaag tccttgtcga agcggcgggc cgcaagatgg gaccattctg
     3901 gcgccgccct tgcgccgctg gcaaggcgcc gtccgccccg gcgccgcaaa gcggcagagc
     3961 gattcgggga tcgaagccgg gcatggccgg tcctctgtaa aggaccatca ggcggctgca
     4021 atgcccggcg cccaggcgca cacttggggg catccgcaac gaggcaaacg atgcacgatt
     4081 ccaccgcaca actactggaa gtcgccggcg gcaagccgat caagctctgg acccgcggcg
     4141 ttccggtgga agaggctgcg cgccagcagc tgatcaacac ggccaggctg ccgttcatct
     4201 tcaagcacct ggcggtgatg ccggatgtgc acctgggcaa gggctcgacc atcggcagcg
     4261 tgatccccac ggtcggcgcc gtgataccgg ccgcggtagg cgtggacatc ggctgcggca
     4321 tgatcgccgc gcgcacctcg ctgagcgccg ccgacctgcc ggacaacctg cacggcctgc
     4381 gcagcgccat cgagcgggcc gtgccccacg gcaagacctt cggccgtcgc gaccagggtg
     4441 cctggagcga tgtgccggcc caggcggacc aggcctggaa ggccctggcc gggcgcttcc
     4501 gcgccatcac ccagaaatac ccgcgcctgg agaagaccaa caaccgcagc cacctcggca
     4561 ccctgggcac cggcaaccac ttcatcgagg tctgcctgga cgaggccgac cgcgtctggt
     4621 tcatgctgca cagcggctcg cgcggggtcg gcaatgccat cggcagcctg ttcatcga
//
LOCUS       DATIHC010000746         3422 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30123, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000746 DATIHC010000000
VERSION     DATIHC010000746.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3422)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3422)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3422
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30123"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(3..920)
                     /gene="cysD"
                     /locus_tag="VLF16_12355"
     CDS             complement(3..920)
                     /gene="cysD"
                     /locus_tag="VLF16_12355"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011912238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004781 - sulfate adenylyltransferase
                     (ATP) activity [Evidence IEA];
                     GO_process: GO:0019419 - sulfate reduction [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HSX71711.1"
                     /translation="MLDKLTHLKQLEAESIHIIREVAAEFDNPVMLYSIGKDSAVMLH
                     LARKAFFPGKLPFPVLHVDTRWKFQDMYRFREKMVGEYGLDLLTHINPDGVAQDMNPF
                     TYGSAKHTDVMKTEGLKQALDKYGFDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPK
                     NQRPELWNVYNGKVKKGESIRVFPLSNWTELDIWQYIYLEQIPIVPLYFAAEREVIEM
                     NGALIMIDDERILEHLTPEQKASITKKMVRFRTLGCYPLTGAVESTATTLPEIIQEML
                     LTKTSERQGRVIDHDQAGSMEEKKRQGYF"
     gene            complement(1140..1898)
                     /locus_tag="VLF16_12360"
     CDS             complement(1140..1898)
                     /locus_tag="VLF16_12360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005766535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051540 - metal cluster binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HSX71712.1"
                     /translation="MAIALTTLVEEADRFLNAARISDYCPNGLQVEGRPQVRRIVSGV
                     TASQALLDAAVEAEADVVLVHHGYFWKGEDARITGMKRRRLQTLLGNDISLLAYHLPL
                     DVHPEVGNNVQLARQLDITVEGPLDSNNPKVVGLLGSLAEPVSARDFARRVQEVLGRE
                     PLLVEGHGMVRKVGWCTGGGQGYIDTAIAGGVDLFLTGEASEQTFHSARENGVSFIAA
                     GHHATERYGVQALGDYLARRFAVEHLFIDCPNPV"
     gene            2012..3172
                     /gene="algW"
                     /locus_tag="VLF16_12365"
     CDS             2012..3172
                     /gene="algW"
                     /locus_tag="VLF16_12365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017904287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Do family serine endopeptidase AlgW"
                     /protein_id="HSX71713.1"
                     /translation="MLKALRFLGWPLVVGLLLALLLIQRYPQWVGLPGNEVHLQQAPR
                     YGIAQEGPVSYADAVSRAAPAVANLYTTKVASKSGHPLLEDPVFRRFFGDNLPKQRRM
                     ESSLGSAVIMSREGYLLTNNHVVSDADQIVVALKDGRETLARLIGSDPETDLAVLKID
                     LENLPAITLGRSDQIQIGDVTLAIGNPFGVGQTVTMGIISATGRNQLGLNTYEDFIQT
                     DAAINPGNSGGALVDAHGNLIGINTAIFSKSGGSQGIGFAIPVKLAREVMKAIIERGQ
                     VIRGWLGIEVQPLTPELAESFGLQGRAGILVAGLYRGGPAQKAGLQPGDLILRIGDEA
                     AVDGRRSMNQVARAQPGDQITIEVLRNGKVMKLTAEIGVRPPVEVKPQPQQP"
     gene            complement(3210..>3422)
                     /locus_tag="VLF16_12370"
     CDS             complement(3210..>3422)
                     /locus_tag="VLF16_12370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSX71714.1"
                     /translation="GRSFEVLPSAANFVFVRHPQKDAGELAAALREHGVIVRHFKQAR
                     IAQFLRITIGNPEQNQALLDALGQVL"
BASE COUNT          570 a         1131 c         1119 g          602 t
ORIGIN      
        1 ccttagaagt agccctgacg tttcttttct tccatcgaac cggcctggtc gtgatcgatg
       61 acccgaccct ggcgttcgct ggtcttggtc aggagcattt cctggatgat ttccggcagc
      121 gtggtcgcgg tggactccac cgcgccggtc agcgggtagc agccgagggt acggaagcgc
      181 accatcttct tggtgatgct ggccttctgc tcgggcgtca ggtgctcgag gatgcgctcg
      241 tcgtcgatca tgatcagcgc gccattcatc tcgatcactt cgcgctcggc ggcgaagtag
      301 agcggcacga tcggaatctg ctccaggtag atgtactgcc agatgtccag ctcggtccag
      361 ttggacagcg ggaacacgcg gatcgactcg cccttcttga ccttgccgtt gtacacgttc
      421 cacagctcgg ggcgctggtt cttcgggtcc cagcgatgct tgctatcgcg gaaggagtaa
      481 acgcgctcct tggcgcggga cttctcctcg tcgcggcggg ccccaccgaa ggcggcatcg
      541 aaaccgtact tgtccagcgc ctgcttgagg ccttcggtct tcatcacgtc ggtgtgcttg
      601 gcactgccgt aggtgaaggg gttcatgtcc tgcgccacgc catcggggtt gatgtgggtg
      661 agcaggtcca ggccgtactc gccgaccatc ttctcgcgga agcggtacat gtcctggaac
      721 ttccagcggg tgtcgacatg cagcaccggg aacggcagct tgccggggaa aaaggccttg
      781 cgggcgaggt gcagcatcac cgcggagtct ttgccgatgg aatacagcat caccgggttg
      841 tcgaactcgg cggccacctc acgaatgatg tggatgcttt ctgcctcgag ctgtttcagg
      901 tgcgtcagtt tgtcgagcat ggcttatcac aggtcaggtg tggacggccg gcgggccgtg
      961 gacgagcgcg cactctagca cagcacctcc ttctattgag gcgcccggtt agaacgaaac
     1021 gatctagttt tatgcccgaa aatcagtgcc gttcgggccg actcatgccc cccgattcgc
     1081 cgtatcggca gcggtggcct cgccgaaacg cgccagcccg tctcggcttt accaccgcct
     1141 caaaccgggt tcggacaatc gatgaacagg tgctcgacgg cgaagcgccg cgccaggtaa
     1201 tcgcccagcg cctgaacgcc atagcgctcg gtggcgtgat ggccggcggc gatgaagctc
     1261 acgccgttct cgcgggcgct gtggaaggtc tgctcggagg cctcgccggt gaggaacagg
     1321 tccaccccgc cggcgatggc ggtgtcgatg taaccctggc cgccgccggt gcaccagccg
     1381 accttgcgca ccatgccatg cccctccacc agcaacggct cgcggcccag cacctcctgc
     1441 acgcggcggg cgaaatcgcg cgcgcttacg ggctcggcca gcgagccgag caggccgacc
     1501 actttggggt tgttcgagtc gagcgggcct tccacggtga tgtcgagctg gcgcgccagc
     1561 tggacgttgt tgcccacctc cgggtgcacg tccagcggca gatggtaggc cagcaggctg
     1621 atgtcgttgc ccagcagggt ctgcaggcgg cggcgcttca tgccggtgat gcgggcgtcc
     1681 tcgcccttcc agaaatagcc gtggtgcacc agtaccacgt cggcctcggc ctctaccgcg
     1741 gcatcgagca gcgcctggct ggcagtcacg ccgctgacga tgcgccgcac ctgcggccgt
     1801 ccctcgacct gcagaccgtt ggggcagtag tcggagatgc gcgcggcatt gagaaaacgg
     1861 tcggcttcct ccaccagggt ggtcagggcg atggccatga aaaatcctcg tcaagctgtt
     1921 gccggcgctg cccttcgggg cggcgacgcc tctataatgc cgccacctta agggccgact
     1981 ccggcccccg caacctcagg atttctctgc aatgctcaag gccctgcgct ttctcggctg
     2041 gcccctggtc gtcggtcttt tgctggcact gctgctgatc cagcgctatc cccagtgggt
     2101 cggcctgccc ggcaacgagg tgcacctgca gcaggcgccg cgctacggca tcgcccagga
     2161 aggcccggtg tcctacgccg acgccgtgag ccgcgccgcg ccggcggtgg ccaacctgta
     2221 caccaccaaa gtggcgagca agtccggcca cccgctgctg gaagacccgg tgttccgccg
     2281 cttcttcggc gacaacctgc ccaagcagcg gcgcatggaa tcgagcctgg ggtcggcggt
     2341 gatcatgagc cgtgagggct acctgctgac caacaaccat gtggtcagcg atgccgacca
     2401 gatcgtggtg gcgctcaagg acggccgcga gaccctggcc cgactgatcg gcagcgaccc
     2461 ggagaccgat ctcgcggtgc tcaagatcga cctggagaac ctgccggcga tcaccctcgg
     2521 ccgctccgat cagattcaga tcggcgacgt caccctggcc atcggcaacc ccttcggcgt
     2581 cggccagacg gtgaccatgg gcatcatcag cgccaccggc cgcaaccagc tgggcctgaa
     2641 cacctacgag gacttcatcc agaccgacgc ggcgatcaac cccggcaact ccggcggcgc
     2701 gctggtggac gcccacggca acctgatcgg catcaacacg gcgatcttct ccaagtccgg
     2761 cggctcgcag ggcatcggct tcgccattcc ggtcaagctg gctcgcgagg tgatgaaggc
     2821 gatcatcgag cgcggccagg tgatccgcgg ctggctgggc atcgaggtgc agccgctgac
     2881 cccggagctg gccgaatcct tcggcctgca gggccgtgcc ggcatcctag tcgccggcct
     2941 gtaccgcggc ggtccggcgc agaaggccgg tctgcaaccg ggcgacctga tcctcaggat
     3001 cggcgacgag gcggcggtgg acggccgtcg ctcgatgaac caggtggcac gcgcccagcc
     3061 gggcgaccag ataacgatcg aggtgctgcg caacggcaag gtcatgaagc tgaccgccga
     3121 gatcggcgta cgcccaccgg tcgaggtgaa gccacaacct cagcagccat gaaaaaaggc
     3181 gccccgcggg gcgccttttt cgtttcggct cagagaacct ggccgagtgc gtcgagcagc
     3241 gcctgattct gttccgggtt gccgatggtg atgcgcagga actgggcgat gcgcgcctgc
     3301 ttgaagtgcc gcacgatcac cccgtgctcg cgcagggcgg cggccagctc gccggcatcc
     3361 ttctgcgggt ggcggacaaa gacgaagttg gccgccgagg gcagcacctc gaagctccga
     3421 cc
//
LOCUS       DATIHC010000747         1973 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37055, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000747 DATIHC010000000
VERSION     DATIHC010000747.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1973)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1973)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1973
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37055"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(38..1138)
                     /locus_tag="VLF16_12375"
     CDS             complement(38..1138)
                     /locus_tag="VLF16_12375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HSX71715.1"
                     /translation="MIKTFGKTLLAMTLAGAVAGMAQADDKVLHVYNWSDYIAPETLE
                     KFTKETGIKVVYDVFDSNEVLEAKLLAGSSGYDIVVPSNPFLAKQIKAGVFQKLDKSK
                     LPNWKNLDTNLLKALDPSDPGNQYSIPYMWGTIGIGYNVDKVKAVLGENAPVDSWDLV
                     FKPENMAKLKECGVSFLDSPTEILPAGLNYLGLSPTSEKTDELKKAEELFLSIRPHTA
                     YFHSSKYIGDLANGNICVAIGYSGDLYQAKSRAEEAKNGVNILYSIPKEGAGSFFDML
                     AVPADAKNVEGAHAFLNFLMKPEIMAEITNFVQLPNGNAAATPLVDEAIRNDPGIYPN
                     EATMAKIYTFPDLPAKVQRTMTRSWTTIKSGK"
     gene            complement(1259..>1973)
                     /locus_tag="VLF16_12380"
     CDS             complement(1259..>1973)
                     /locus_tag="VLF16_12380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSX71716.1"
                     /translation="DKVAAFIAEPIQGAGGVIIPPDSYWPRIREILAKYDILFVADEV
                     ICGFGRTGQWFGSDHFGNRPDLMTIAKGLTSGYVPMGGLIVSDKVFQVINAGGDFNHG
                     FTYSGHPVAAAVGLANLRILKEEKIIERVQSETAPYLQKRLRELADHPLVGEVRGVGM
                     LGAIELAKNKQTRERFPGEMGVGMICRGHCFENGLIMRAVGDTMIIAPPLVISKEEID
                     ELVEKARKCLDLTAQTVLA"
BASE COUNT          310 a          592 c          649 g          422 t
ORIGIN      
        1 ggcgggagca cccgccggag ggtgtcgctg tggtcgctta cttgccggac ttgatggtcg
       61 tccagctgcg ggtcatggtg cgctgcactt tcgccggcag gtccgggaag gtgtagatct
      121 tggccatggt cgcctcgttc gggtagatgc ccgggtcgtt gcggatcgcc tcgtcaacca
      181 gcggggtggc cgccgcgttg ccgttgggca actgcacgaa gttggtgatc tcggccatga
      241 tttccggctt catcaggaag ttcaggaagg catgggcgcc ctcgacgttc ttcgcgtcgg
      301 ccggcacggc cagcatgtcg aagaagctgc cggcaccttc tttcgggatg ctgtacagga
      361 tgttcacgcc gttcttggct tcttcggcgc gggatttggc ctggtacagg tcgcccgagt
      421 agccgatggc cacgcagatg ttgccgttgg ccaggtcgcc gatgtacttc gagctgtgga
      481 agtaggcggt gtgcgggcgg atggagagga acagttcctc ggccttcttc agctcgtcgg
      541 tcttctcgct ggtcgggctc aggcccaggt agttcagacc ggccggcagg atctcggtcg
      601 gcgagtcgag gaaggaaacg ccgcactcct tcagcttggc catgttctcc ggcttgaaca
      661 ccaggtccca ggaatcgacc ggggcgtttt cgcccagcac ggccttgacc ttgtcgacgt
      721 tgtagccaat gccgatggtg ccccacatgt acggaatgga gtactggtta cccgggtcgc
      781 tcgggtccag ggccttcagc aggttggtgt cgaggttctt ccagttcggc agcttggact
      841 tgtccagctt ctggaacacg ccggccttga tctgcttggc caggaagggg ttggacggta
      901 cgacgatgtc gtaaccggag ctgcccgcaa gcagtttggc ttccagcact tcgttgctgt
      961 cgaagacgtc gtagacgacc ttgatgccgg tttccttggt gaacttctca agggtttccg
     1021 gagcgatgta gtcggaccag ttgtagacgt gcagcacctt gtcgtcggcc tgggccatgc
     1081 cggccacggc gcccgccaga gtcatggcaa gcagagtctt gccgaaagtc ttgatcatgc
     1141 gagttagctc cattgtcgtt tgtagtatcc ggggctgcgt cgcctgagcg acgcaccctc
     1201 cggtgagcct ggccaacgca ccccgcagtc tggcaaggtc tggcctgtca ctcaagcctt
     1261 atgccagcac tgtctgggcg gtcagatcga ggcacttgcg ggccttctcg accagctcgt
     1321 cgatctcctc tttgctgatc accagaggcg gcgcgatgat catggtgtcg cccacggcgc
     1381 gcatgatcag cccgttctcg aagcagtgac cgcggcagat catgcccacg cccatctcgc
     1441 ccgggaaacg ctcgcgggtc tgcttgttct tcgccagttc gatggcgccg agcatgccca
     1501 cgccgcggac ctctcccacc agcggatgat cggccagctc acgcaaacgc ttttgcaaat
     1561 acggtgccgt ttcgctctgc acccgctcga tgatcttttc ttccttgagg atgcgcaggt
     1621 tggccaggcc gacggcggcg gccaccgggt ggccggaata ggtgaagccg tggttgaagt
     1681 cgccgccggc attgatcacc tggaacacct tgtcgctgac gatcaggccg cccatgggca
     1741 cgtagccgga ggtcaggccc ttggcgatgg tcatcaggtc cggccggttg ccgaagtgat
     1801 cgctgccgaa ccactggccg gtacggccga agccgcagat cacttcgtcg gcgacgaaca
     1861 ggatgtcgta cttggcgagg atctcgcgga tgcgcggcca gtagctgtcc ggcgggatga
     1921 tcacgccgcc ggcgccctgg atcggctcgg cgatgaaggc ggcgaccttg tct
//
LOCUS       DATIHC010000748         1676 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_20853, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000748 DATIHC010000000
VERSION     DATIHC010000748.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1676)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1676
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20853"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..598
                     /locus_tag="VLF16_12385"
     CDS             <1..598
                     /locus_tag="VLF16_12385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HSX71717.1"
                     /translation="VRLSKERSIFHYARDAGLSTAAAAYHWMSELYNRAPFVAARDRH
                     TDDPALPIQHGHFYYADHYPDSHLFADAESLRLKYAPDFLLVHPMNIDDAGHGYGLDS
                     PQYRNAARRADVILADYLQGWLDAGYQVLVTADHGMNNDRSHNGLLAEEREVPLLVLG
                     GAFSLDPNARPRQTELCGTVCTLLGAAHDKPLCKELLT"
     gene            595..1434
                     /locus_tag="VLF16_12390"
     CDS             595..1434
                     /locus_tag="VLF16_12390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004423597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HSX71718.1"
                     /translation="MRAALRKWPALLCLVPFAVFFFAFQIAPLLWVAINSLIVGDSWS
                     LANFAKIFSSKFYLQAIKHSLQIAFWSSLFGIVIAILGSYSLRQVDSKLRDFVMAFSN
                     MTSNFAGVPLAFAFIILLGFNGALTLTLKQAGLIEDFNLYSKTGLIVLYTYFQIPLGV
                     LLLYPAFDALRQDWRESAQLLGANTWDFWRHIGLPVLTPALLGTFVILLANALGAYAT
                     VYYLTTGNFNVMPIRIAGLVAGDISLDPNLASALAMVLVGLMALITVVHQWLLRRSHR
                     HAH"
     gene            1424..>1676
                     /locus_tag="VLF16_12395"
     CDS             1424..>1676
                     /locus_tag="VLF16_12395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008092907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSX71719.1"
                     /translation="MRTEAKPAALYHRVVVWLLFLILLLPLAATLLYSLSTSWSATIL
                     PDGLTFKWYLALWSDSRFLAAFGQSLLVCFGALLLAVVLI"
BASE COUNT          250 a          636 c          476 g          314 t
ORIGIN      
        1 ggtgcgcctg tcgaaggagc gcagcatctt ccactacgcc cgcgacgccg gcctctccac
       61 cgccgcggcg gcctaccact ggatgagcga gctgtacaac cgcgcgccct tcgtcgccgc
      121 ccgcgaccgc cacaccgatg atccggccct gccgatccag catggccact tctattacgc
      181 cgaccactac ccggactcgc acctgttcgc cgacgccgag agcctgcgcc tgaaatacgc
      241 gccggacttc ctgctggtgc atccgatgaa catcgacgac gccggccacg gctacggcct
      301 ggattcgccg cagtaccgca acgccgcgcg ccgcgccgac gtgatcctcg ccgactacct
      361 gcaaggctgg ctggatgccg gctaccaggt gctagtaacc gccgaccatg gcatgaacaa
      421 cgaccgctcg cacaacggcc tgctggccga ggaacgcgag gtgccgctgc tggtgctggg
      481 tggcgcgttc agtctcgacc ccaacgcccg cccgcggcag accgagctgt gcggtaccgt
      541 ctgtaccctg ctcggcgccg cccacgacaa acctctgtgc aaggaactgc tcacgtgaga
      601 gccgcactcc gcaagtggcc ggcactcctg tgcctggtgc ccttcgccgt gttcttcttc
      661 gccttccaga tcgccccgct gctgtgggtc gccatcaaca gcctgatcgt cggcgacagc
      721 tggagcctgg ccaacttcgc caagatcttc tcctccaagt tctacctgca ggcaatcaag
      781 cacagtctgc agatcgcctt ctggtcgagc ctgttcggca tcgtcatcgc catcctcggc
      841 agctactcgc tgcgccaggt ggactcgaag ctgcgcgact tcgtcatggc cttctccaac
      901 atgaccagca acttcgccgg cgtgcccctg gcgttcgcct tcatcatcct gctcggcttc
      961 aacggcgcgc tgaccctgac gctcaagcag gccgggctga tcgaggactt caacctctac
     1021 tccaagaccg gcctgatcgt gctctacacc tatttccaga ttcccctggg cgtgctgctg
     1081 ctctacccgg ccttcgacgc cctgcgtcag gactggcgcg aatcggccca gttgctcggc
     1141 gccaacacct gggacttctg gcggcacatc ggcctgccgg tgctgacccc ggcgctgctc
     1201 ggcaccttcg tcatcctgct ggccaacgcc ctcggcgcct acgccaccgt ctactacctg
     1261 accaccggca acttcaacgt gatgccgatc cgcatcgccg gcctggtggc gggcgacatc
     1321 agcctcgacc ccaacctggc cagcgccctg gccatggtgc tggtcggcct gatggcgctg
     1381 atcaccgtgg tgcaccagtg gctgctgcgc aggagccatc gccatgcgca ctgaagccaa
     1441 gcccgccgcc ctctaccacc gcgtggtggt ctggctgctg ttcctgatcc tgctgctgcc
     1501 gctggcggcc accctgctct actcgctgtc caccagttgg tcggcaacca tcctgccgga
     1561 cggcctgacc ttcaagtggt acctggcgtt gtggagcgac agccgcttcc tcgccgcctt
     1621 cggccagtcg ctgctggtgt gcttcggcgc gctgctgctg gcggtcgtgc tgatcc
//
LOCUS       DATIHC010000749         2478 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37062, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000749 DATIHC010000000
VERSION     DATIHC010000749.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2478
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37062"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1327)
                     /locus_tag="VLF16_12400"
     CDS             complement(<1..1327)
                     /locus_tag="VLF16_12400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate-utilizing N-terminal
                     domain-containing protein"
                     /protein_id="HSX71720.1"
                     /translation="MLNTLRKIVQEVNAAKDLRAALTIIVQRVKEAMGSHVCSVYLLD
                     PETNRFVLMATDGLNKRSIGKVSMAPNEGLVGLVGTREEPLNLEHASEHPRYRYFPET
                     GEERYASFLGAPIIHHRRVMGVLVVQQKERRQFDEGEEAFLVTMSAQLAGVIAHAEAT
                     GSIRGLGKQGKGIQETRFVGVPGSPGAAVGTAVVVLPPADLNVVPDKSIDDIEAELVL
                     FGKALDWVREDMQELSAKLASQLRKEELALFDVYLMMLDDNALGSEVRKVIKTGQWAQ
                     GALRQVVLEHVKRFELMDDAYLRERASDVRDLGRRLLAYLQEERKQTLVYPDNSILVS
                     EELSPAMLGQVPEGKLVGLISVQGSGNSHVAILARAMGIPTVMGVVDLPYSKVDGIQL
                     IVDGYHGEVFTNPSELLRKQYAEVVEEERQLAQGLDALRELPCETLDGRR"
     gene            complement(1347..1826)
                     /locus_tag="VLF16_12405"
     CDS             complement(1347..1826)
                     /locus_tag="VLF16_12405"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HSX71721.1"
                     /translation="MIDSDGFRPNVGIILTNDVGQVLWARRINQDAWQFPQGGINPNE
                     SAEQALYRELNEEVGLEQQDVKILACTRGWLRYRLPQRLVRTHSQPLCIGQKQKWFLL
                     RLVGEESRVRMDLTGKPEFDGWRWVSYWYPLNQVVTFKREVYRRALKELAPRLLARD"
     gene            1972..>2478
                     /locus_tag="VLF16_12410"
     CDS             1972..>2478
                     /locus_tag="VLF16_12410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014821848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IB family hydrolase"
                     /protein_id="HSX71722.1"
                     /translation="MRLALFDLDNTLLAGDSDHSWGEFLCETGRVDATEYRARNDAFY
                     ADYVAGRLDAVAYQSFTQAILSRTEAAELARWQAEFMAAVIEPIVLAKGEALLRQHRE
                     AGDRVVIITATNRFITTPIAARLGVETLIATECGMQDGLYTGRVDGVPCYQDGKVTHL
                     NRWLAQTGQ"
BASE COUNT          405 a          828 c          816 g          429 t
ORIGIN      
        1 ggcggcggcc gtccagcgtc tcgcagggca gctcgcgcag ggcatcgagg ccctgggcca
       61 gctggcgctc ttcctcgacc acctcggcgt attgcttgcg cagcagctcg ctggggttgg
      121 tgaagacctc gccgtggtag ccgtcgacga tcagctgaat gccgtcgacc ttggagtagg
      181 gcaggtcgac cacgcccatg accgtgggaa tgcccatggc gcgggcgagg atggctacgt
      241 gggagttacc cgagccctgt accgagatca ggccgaccag cttgccttcc ggcacctggc
      301 cgagcatcgc cggcgagagt tcctcgctga ccaggatgct gttgtcgggg tagaccaggg
      361 tctgcttgcg ctcttcctgc aggtaggcga gcaggcggcg gccgaggtcg cgtacatcgg
      421 aggcgcgttc gcgcaggtag gcgtcgtcca tcagctcgaa gcgtttgacg tgctccagca
      481 ccacctggcg cagcgcgccc tgggcccact ggccggtctt gatgaccttg cgcacctcgc
      541 tgccgagggc attgtcgtcg agcatcatca ggtagacgtc gaacagcgcc agctcttcct
      601 tgcgcaactg gctggcgagc ttggccgaca gctcctgcat gtcctcgcgg acccagtcca
      661 gggccttgcc gaacaggacg agttcggcct cgatgtcgtc gatggacttg tccggcacca
      721 cgttgagatc ggccggcggc aacaccacta cggcggtacc gacggcggcg ccgggcgagc
      781 cggggacgcc gacgaaacgg gtctcctgga tgcccttgcc ctgcttgccc aggccgcgga
      841 tcgagccggt ggcctcggcg tgggcgatga ccccggcgag ctgggcgctc atggtgacga
      901 ggaaggcttc ttcgccctcg tcgaactggc ggcgctcctt ctgctgcacc accagtacgc
      961 ccatcacccg gcggtggtgg atgatcggcg cgccgaggaa ggaggcgtag cgctcctcgc
     1021 cagtctcggg gaaataacgg tagcgggggt gttccgaggc gtgctcgagg ttgagcggtt
     1081 cctcgcgggt gcccaccagg ccgaccaggc cctcgttggg cgccatgctg accttgccga
     1141 tggagcgctt gttgaggccg tcagtggcca tcagcacgaa gcggttggtc tcggggtcga
     1201 gcaggtagac cgagcagacg tggctgccca tggcttcctt cacccgctgc acgatgatcg
     1261 tcagcgccgc ccggagatcc ttggcggcgt ttacttcctg gacgatcttg cgcagcgtgt
     1321 tgagcatggc tcgttatcga actccgtcag tcgcgcgcca gcaggcgcgg ggctaattcc
     1381 ttcagggcgc gccgatagac ctcgcgcttg aacgtcacca cctggttcag cgggtaccag
     1441 taacttaccc agcgccagcc gtcgaattcc ggcttgccgg tcaggtccat gcgcacgcgg
     1501 ctttcctcgc cgaccaggcg cagcaggaac cacttctgct tctgcccgat gcacagcggc
     1561 tggctgtgag tgcgtaccag acgctggggc agacgataac gcaaccagcc acgggtgcag
     1621 gcaagaatct tcacatcctg ctgttccagg cccacttcct cgttgagctc gcggtacagc
     1681 gcctgctcgg ccgactcgtt ggggttgatg ccgccctgag gaaactgcca ggcgtcctgg
     1741 ttgattcgcc gtgcccagag cacctggcca acatcattgg tcaggatgat gccgacatta
     1801 gggcgaaaac catcggaatc gatcacggca caccacctcg caaacgcacg ttccggcatt
     1861 gttccacaaa gctcgcgggc gcagcaaacg cgggctatgc gccgtgggca ggggggatga
     1921 aaacggctat tctggcgccc cttccggcca tttcgaacca ggtaccacgc catgcgcctc
     1981 gccctcttcg acctcgacaa cacactgctc gccggcgaca gcgaccacag ttggggcgag
     2041 ttcctctgcg agactgggcg tgtcgacgcc accgaatacc gcgcgcgcaa cgatgccttc
     2101 tatgccgact acgtcgccgg ccggctggac gcggtggcct atcagagctt cacccaggcc
     2161 atcctcagcc gcaccgaggc cgccgagctg gcgcgctggc aggccgagtt catggccgcg
     2221 gtgatcgagc ccatcgtcct ggccaagggc gaggcgctgc tgcgccagca ccgcgaggct
     2281 ggcgaccggg tggtgatcat caccgccacc aaccgcttca tcaccacgcc catcgccgcg
     2341 cgtctgggcg tcgagacgct gatcgccacc gaatgcggca tgcaggacgg tctctatacc
     2401 ggccgggtcg acggcgtgcc ctgctaccag gacggcaagg tgacgcacct caaccgctgg
     2461 ctggcgcaga ccgggcag
//
LOCUS       DATIHC010000750         2159 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34699, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000750 DATIHC010000000
VERSION     DATIHC010000750.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2159
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34699"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..155)
                     /locus_tag="VLF16_12415"
     CDS             complement(<1..155)
                     /locus_tag="VLF16_12415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71723.1"
                     /translation="MIFEWMADPTAWLGLLTLIVLEIVLGIDNLVFIAILADKLPPHL
                     RDRARLIG"
     gene            complement(403..1179)
                     /locus_tag="VLF16_12420"
     CDS             complement(403..1179)
                     /locus_tag="VLF16_12420"
                     /EC_number="1.18.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019095097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004324 - ferredoxin-NADP+ reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP reductase"
                     /protein_id="HSX71724.1"
                     /translation="MSASEEKFTRQTLTDVRVWSPSLFSLRCTRDAGFRFRAGQFARL
                     GVRKADGSVVWRAYSMVSAPHDDHLEFFSIVVPGGEFTSELSRLAAGDELLVEKQAFG
                     YLTLDRFPDGRDLWLIGTGTGLAPFLSILQDLEAWQRFERIVLVYSARDRGELAYQEL
                     IAELPQREWLEGAGHKLTYVPVVTREQVPGALGERVTRLIENGELERAAGLALSPEQS
                     RVMLCGNPQMIDDTRATLKARGLQLSLSRRPGAVAVETYW"
     gene            complement(1256..>2159)
                     /locus_tag="VLF16_12425"
     CDS             complement(1256..>2159)
                     /locus_tag="VLF16_12425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003112794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005488 - binding [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DctP family TRAP transporter solute-binding
                     subunit"
                     /protein_id="HSX71725.1"
                     /translation="FSHVVAEDTPKGRGALLFQRLVGERLGDAVKVEVYPNSTLFGDA
                     DEIGALLRGEVQMLAPSVSKFEAYTKQLQVFDLPFLFDDLEAVKRFQRREKSRELLRS
                     MAGHNIYGLAFWNNGMKQLSATRELRAPADAKGLAFRIQASSVLEAQFAALGAEARRI
                     PFGESLKALQAGTVQGTENAWSNMTAAGFDRAQPFITETNHGSLNYMLISSSSFWQSI
                     PYATRSELESIVEEVTAQVNREAEQLNRQGREQLAAAGQAKLVALSPAERAAWRSAMQ
                     PLWKQYEAEIGADVLRAAQTVNRR"
BASE COUNT          356 a          704 c          757 g          342 t
ORIGIN      
        1 ccgatcaggc gggcacggtc gcgcaggtgc ggcggcagct tgtcggcgag gatcgcgatg
       61 aacaccaggt tgtcgatgcc caggacgatc tccaggacga tcagcgtcag caggcccagc
      121 caggcggtgg ggtcggccat ccattcgaag atcatgcttt cctccgggca ggcgtcatcg
      181 cggcgcgggc gcgagagtcg cggcgctggg cgaggctatc ggatatggca aggggaagac
      241 gcgcgcgggc gtcgagggaa gggaggccac tcgggggtgg cgggcaactg tcgctgtcca
      301 tgggttccgc ttgggaaaaa agggacgacc atgctaccgg cacacgctgg ctcctctaag
      361 cggcaaacag ttaccaattc ttaacgcggc acacggcgcg ctttaccagt acgtttccac
      421 cgccacggcg ccggggcggc gactgagcga cagctgcagg ccgcgagcct tcagggtggc
      481 gcgggtgtcg tcgatcatct gcgggttgcc gcacaacatc acccgcgact gttccgggct
      541 cagcgccagt ccggcggcgc gctccagctc gccgttctcg atcagccggg tgacccgctc
      601 acccagcgca ccgggcacct gttcgcgggt caccaccggt acataggtca gcttgtgccc
      661 ggcaccctcc agccattcgc gctgcggcag ctcggcgatc agttcctggt acgccagttc
      721 gccgcggtca cgggcgctgt acaccaggac gatgcgttcg aaacgctgcc aggcctccag
      781 gtcctgaaga atcgacaaga aaggcgcgag accggttccg gtgccgatca gccacaggtc
      841 gcggccatcg ggaaagcggt cgagggtgag atagccgaag gcctgcttct ccaccagcag
      901 ttcgtcgccg gcagcgagac ggcttagctc ggaggtgaac tcgccgccgg gaacgacgat
      961 ggagaagaac tcgaggtgat cgtcgtgggg cgccgagacc atcgagtagg cgcgccagac
     1021 cacgctgccg tcggccttgc gcacgccgag gcgggcgaac tgcccggcgc ggaagcggaa
     1081 gcccgcgtcg cgggtgcagc gcaggctgaa caggctgggc gaccacacac gcacgtcggt
     1141 gagggtctgg cgggtgaact tctcttcgct ggcactcatg gtttttcctc gctgggcccc
     1201 ggcagtctgg cgcaaaggcg gccggacaaa aaccatcagt tcgcagggaa aaggcctagc
     1261 gccggttcac cgtctgcgcg gcgcgcagca cgtcggcgcc gatctccgcc tcgtattgct
     1321 tccacagcgg ctgcatggcg ctgcgccagg ccgcgcgctc cgctgggctg agcgcgacca
     1381 gcttcgcctg gccggccgcc gccaactgtt cgcgaccctg gcggttgagc tgctcggcct
     1441 cgcggttcac ctgggcggtg acttcctcga cgatggactc cagctcgctg cgggtggcgt
     1501 agggaatgct ctgccagaac gacgagctgc tgatcagcat gtagttgagc gagccgtggt
     1561 tggtctcggt gatgaacggc tgggcgcggt cgaagccggc cgcggtcatg ttcgaccagg
     1621 cgttctcggt gccttgcacg gtgccggcct gcagcgcctt gagcgactcg ccgaagggga
     1681 tgcgcctggc ctcggcgccg agcgcggcga actgcgcctc cagcacgctg gaagcctgga
     1741 tgcggaaggc cagccccttg gcatcggccg gcgcgcgcag ctcgcgggtg gcggagagct
     1801 gtttcatgcc gttgttccag aaggccaggc catagatatt gtggccagcc atggagcgca
     1861 gcagttcgcg gctcttctcg cggcgctgga agcgcttcac cgcctccagg tcgtcgaaca
     1921 ggaacggcag gtcgaacacc tgcagctgct tggtgtaggc ctcgaacttg gacaccgagg
     1981 gcgccagcat ctgcacctcg ccgcgcagca gcgcgccgat ctcgtcggca tcgccgaaca
     2041 gcgtcgagtt ggggtagacc tcgaccttca ccgcatcgcc caggcgttcg cccaccaggc
     2101 gctggaacag cagcgcgccg cgacccttgg gggtgtcctc ggcgaccacg tgggagaac
//
LOCUS       DATIHC010000751         3194 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_32582, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000751 DATIHC010000000
VERSION     DATIHC010000751.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3194)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3194
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32582"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..814)
                     /gene="rnd"
                     /locus_tag="VLF16_12430"
     CDS             complement(<1..814)
                     /gene="rnd"
                     /locus_tag="VLF16_12430"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008074416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016891 - RNA endonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HSX71726.1"
                     /translation="MAIDIQWILDDASLARHCAEWRELPFVAVDTEFMRVDTFYPIAG
                     LLQVGDGQRAYLIDPLQVKDWAPFAALLEDRAVTKVLHSCSEDLEVFLRLTGALPTPL
                     FDTQLAAGYLNIGFSMGYSRLVQEVLGIELPKGETRSDWLQRPLSETQVSYAAEDAQH
                     LAELYQVLLPRLSEDKLAWLLEDGAELVGNLRRETDPDQAYLDAKLAWKLSRQQLAVL
                     RALSAWRERQARARNQPRNRILREHSLWPLARFQPDNTVALARIEDMHPRTVR"
     gene            922..1980
                     /locus_tag="VLF16_12435"
     CDS             922..1980
                     /locus_tag="VLF16_12435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016491774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HSX71727.1"
                     /translation="MKKLLGILVLASLAIALYLGLTPSPIDPLAWQPQTAPLMTGAME
                     PNDTLMKAELLARGQIHGPEDTAVDAQGRIYAGLHDGRVVRITDGQVETFAATGGRPL
                     GMDFDAQGNLILADAYKGLLRIDPAGKIGVLATEADGVPFAFTDDLDIASDGRIYFTD
                     ASSKFQQPDYLLDLLEGRPYGRLMVFDPASGKTQVLLKDLYFANGVALSQNEDFVLVN
                     ETYRYRIQRYWLKGDKAGTHEIFADNLPGLPDNLQGDRAGTFWVALPTPRKSDADFLQ
                     NQPWLKAQMAKLPRALWPKPTSYGLAIALNEQGEIVQSLHDTSGTHLRMITSVKPMGD
                     YLYLGSLDNDRIGRLKIR"
     gene            complement(2404..>3194)
                     /locus_tag="VLF16_12440"
     CDS             complement(2404..>3194)
                     /locus_tag="VLF16_12440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017362885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HSX71728.1"
                     /translation="LGLQPAIESANLARRVGVVLGTALVTAYYCCAILLRALTGRLRR
                     ADVDRYTRRWSGLLLRLVRMNLSVHGAMPDFNDGRRYILLSSHASHYDIPASFVALPG
                     SIRMLAKKELFGIPLFGAAIRAAEFPSVDRHNRQQAVKDLEKAKRMMESGIVLWAAPE
                     GTRSRDGQLLPFKKGCFHLALDTNAVIVPIVFRGISEVLPARTWRFNLGLPVQLHIGA
                     PIDASRYSPEQLPELMTQTRLSMQELLGEPAPSTPRGLLTEQPV"
BASE COUNT          510 a         1057 c         1122 g          505 t
ORIGIN      
        1 ggcgcacggt gcgcgggtgc atgtcctcga tgcgcgccag ggcgacggtg ttgtccggct
       61 ggaagcgcgc cagcggccac agcgaatgct cgcgcaggat gcggttgcgc ggctggttgc
      121 gggcgcgtgc ctggcgctcg cgccaggcgc tgagggcgcg cagcacggcg agctgctggc
      181 gcgacagttt ccaggccagc ttggcgtcca ggtaggcctg gtccgggtcg gtctcgcggc
      241 gcaggttgcc gaccagctcg gcgccgtcct cgaggagcca cgcgagcttg tcttccgaca
      301 gcctcggcag cagcacctgg tacagctcgg cgaggtgctg ggcatcctcg gcggcgtagc
      361 tgacctgggt ttccgacagc ggccgctgca gccagtcgga gcgcgtctcg cccttgggca
      421 gctcgatgcc gagcacttcc tggaccaggc gcgagtagcc catggagaag ccgatgttga
      481 ggtagccggc ggccagctgg gtgtcgaaca gcggcgtcgg cagcgcgccg gtcaggcgca
      541 ggaagacttc caggtcctcg ctgcaggagt gcagcacctt ggtcaccgcg cggtcttcca
      601 gcaacgcggc gaacggtgcc cagtccttca cctgcagcgg gtcgatcagg taggcccgtt
      661 ggccgtcgcc cacctgcagc aggccggcga tgggatagaa ggtgtcgacc cgcatgaatt
      721 cggtatcgac cgcgacgaag ggcagctcgc gccactcggc gcagtgacgc gccaggctgg
      781 cgtcgtcgag gatccattga atgtcgatgg ccacgcggca ctccttgatt gatgccgcgc
      841 agtatatatg cccggggcgg ataccgggca ttcgcgccct gcgtgtacac tgccgcgcac
      901 cgcaaaccag ggaagaacaa catgaagaaa ctcctcggca tcctggtgct ggccagcctg
      961 gccatcgccc tctacctcgg cctgacgccc agccccatcg acccgctggc gtggcagccg
     1021 cagaccgcac cgctgatgac cggcgccatg gaacccaacg acaccctgat gaaggccgag
     1081 ctgttggccc gggggcagat ccacggcccg gaagacaccg cggtggacgc ccagggccgg
     1141 atctacgccg gtctgcatga cggccgcgtg gtgcgcatca ccgacggcca ggtcgagacc
     1201 ttcgccgcca ccggtggccg cccgctgggc atggacttcg acgcccaggg caacctgatc
     1261 ctcgccgacg cctacaaggg cctgctgcgc atcgacccgg ccggcaagat cggcgtgctg
     1321 gcgaccgagg ccgatggcgt gcccttcgcc ttcaccgacg atctggacat cgccagcgac
     1381 ggacgcatct acttcaccga tgcctccagc aagttccagc agccggacta cctgctcgac
     1441 ctgctcgagg gtcgcccgta cggccgcctg atggtgtttg acccggccag cggcaagacg
     1501 caggtgctgc tcaaggacct gtacttcgcc aacggcgtag cgctgtcgca gaacgaggac
     1561 ttcgtgctgg tcaacgagac ctaccgctac cgcatccagc gctactggct gaagggcgac
     1621 aaggccggca cccacgagat ctttgccgac aacctgccgg gcctgccgga caacctgcag
     1681 ggcgaccgtg ccggcacctt ctgggtggcc ctgccgaccc cgcgcaagag cgacgccgac
     1741 ttcctgcaga accagccctg gctcaaggcc cagatggcca agctgccgcg cgcgctgtgg
     1801 ccgaagccga cctcctacgg cctggccatc gccctcaacg aacagggcga gatcgtgcag
     1861 agcctgcacg acaccagcgg cacccacctg cgcatgatca cctcggtgaa gccgatgggc
     1921 gattacctgt acctgggcag cctggacaat gaccggatcg gcaggctgaa gattcgctga
     1981 gttctttgtg cctcggtgca ggctgatggg gtgcgctcgg ccttgggacg gtgcaccagc
     2041 ggggcctcgt ttggcgggct gccgctgcgc ggcgaggccg ccctacgaag gtgctgcgct
     2101 cgcggggtat tcgttggggc gtgggcgcgg cctgcggttg gggacgtccg ttggccgtgg
     2161 ggtgcaccca ccgatagggc agtgcaccgg ccgggtcttg cttggcgggc tgccgcttcg
     2221 cggcgaggcc gccctacgag gagcgtggcg ctcggcgagg tattcgacgg tgcgtccgcg
     2281 attaagcgtt gcgaatcgtg gggaccactc gccgtagggg aatgcaaccg caggcatcgc
     2341 ctgggggctg ccgctgcgcg gcaggccgtc ctacgaaaag cccgccattc ggcgggcttt
     2401 ttgtcagacg ggttgttcgg tcaggagtcc ccggggcgtg ctcggggccg gttcgccgag
     2461 cagttcctgc atgctcaggc gggtctgggt catcagttcc ggcagctgtt cgggactgta
     2521 gcggctggcg tctatcgggg cgccgatgtg cagttgcacc ggcaggccga ggttgaagcg
     2581 ccaggtgcgc gccggcagca cttcggagat cccgcgaaag acgatgggca cgatcaccgc
     2641 attggtatcc agggccaaat ggaagcagcc cttcttgaac ggcagcagct ggccgtccct
     2701 ggagcgtgtg ccctcgggcg cggcccacag gacgatgccg ctctccatca tgcgtttggc
     2761 cttctccagg tccttgaccg cctgctggcg gttgtgccgg tccaccgagg ggaattcggc
     2821 ggcgcggatg gccgcgccga acagcgggat gccgaacagc tccttcttcg ccagcatgcg
     2881 gatcgacccc ggcagggcga cgaaactggc gggaatgtcg tagtggctgg cgtggctgct
     2941 gagcaggatg tagcggcggc cgtcgttgaa atccggcatc gcgccgtgca cgctgaggtt
     3001 catgcgcacc aggcgcagca gcaggccaga ccagcgccgg gtatagcgat ccacatcggc
     3061 ccgtcgcaat cggccggtga gcgcacgcag caggatcgcg cagcaatagt aggcggtgac
     3121 cagcgccgtc cccagaacca cgccgacgcg gcgggccagg ttggcgcttt cgatggcagg
     3181 ttgcaggccg agca
//
LOCUS       DATIHC010000752         4818 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_15171, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000752 DATIHC010000000
VERSION     DATIHC010000752.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4818)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4818)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4818
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15171"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1676)
                     /gene="dnaK"
                     /locus_tag="VLF16_12445"
     CDS             complement(<1..1676)
                     /gene="dnaK"
                     /locus_tag="VLF16_12445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HSX71729.1"
                     /translation="MGKIIGIDLGTTNSCVAILENGSVKVIENAEGARTTPSIIAYTN
                     DGETLVGQSAKRQAVTNPHNTLYAVKRLIGRRFEEDVVQKDIKMVPYKIAKADNGDAW
                     VEVKGQKMAPPQISAEVLKKMKKTAEDYLGETVTEAVITVPAYFNDSQRQATKDAGRI
                     AGLDVKRIINEPTAAALAYGMDKAKGDHTVIVYDLGGGTFDVSVIEIAEVDGEHQFEV
                     LATNGDTFLGGEDFDIRLIDYLADEFKKESGIDLKGDPLAMQRLKEAAEKAKIELSSA
                     QQTDVNLPYITADATGPKHLNVKISRAKLEALVEELVSRTIEPCRIALKDAGLDVGSI
                     DEVILVGGQTRMPLVQQKVAEFFGKEARKDVNPDEAVAIGAAIQGAVLAGDVKDVLLL
                     DVSPLTLGIETMGGVMTPLIEKNTTIPTKKSQVFSTADDNQSAVTIHVLQGERKQAAQ
                     NKSLGKFDLAEIPPAPRGVPQIEVTFDIDANGILHVGAKDKATGKENKIRIQASSGLS
                     DDEIERMVRDAEANAEEDRKFEELAAARNQGDGLVHATRKMVTEAGDKATA"
     gene            complement(1785..2408)
                     /gene="grpE"
                     /locus_tag="VLF16_12450"
     CDS             complement(1785..2408)
                     /gene="grpE"
                     /locus_tag="VLF16_12450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HSX71730.1"
                     /translation="MGGKKRGSEPAEQSQEDPMADEQNLDNPTPEEQLAPEAAVGDEA
                     AARVQALEEQLAAAQDQSLRMAADLQNVRRRAEQDVEKAHKFALEKFANDLLPVVDSL
                     ERGLEMTSAADEASKAMREGMELTLKLFQDTLKRHQLEAVDPHGTPFNPEHHQAMAME
                     ESTHVEPNTVLKVFQKGYLLSGRLLRPAMVVVSKAPLAPQPSIDEQA"
     gene            2501..4174
                     /gene="recN"
                     /locus_tag="VLF16_12455"
     CDS             2501..4174
                     /gene="recN"
                     /locus_tag="VLF16_12455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003293244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HSX71731.1"
                     /translation="MLVHLSIHNYAIVEHLDLELERGMSVITGETGAGKSIMLDALGL
                     ALGDRADSGVVRPGADKADILASFDLEDIAEARAWLAERDLDNDGPCILRRVITSEGR
                     SRGYINGAPCPLGDLKALGELLIDIHSQHEHQSLLKPDTHRRLLDEYAGSQELARQVQ
                     LAAQRWRQTRQELQRLSSTGDEQRARHQLLSYQLEELENLALGDNELEQLEQDHKTLS
                     SAEQLLGACRQVLELCSESDAGNVLSALTASLNRLSGFTSQPSALGEATNLLASAQIQ
                     VEEAVGELNRFVDHFDADPQRQQQIEERLDAIYSLARKHRVQPFELAELQQRLLEELE
                     SLNADDEAVERLGEELAAYARHYQEKAAELSTLRHQAAERLASAVQVEMQDLGMPGGR
                     FNIELSTAGSDEPQPHGLEQVEFLVSANPGQPIKSLAKVASGGELSRISLAIQVITAQ
                     TSRVPTLVFDEVDVGIGGPTAEVVGQLLRRLGERGQVLTVTHLPQVAAQGHQHLFVHK
                     ARGKDSTQTAVANLAPEGRIEEIARMLGGVDLTEESLAHARKMVTKAQA"
     gene            complement(4234..4644)
                     /gene="fur"
                     /locus_tag="VLF16_12460"
     CDS             complement(4234..4644)
                     /gene="fur"
                     /locus_tag="VLF16_12460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HSX71732.1"
                     /translation="MVENNELRKAGLKVTLPRVKILQMLDSATSGQRHMSAEDVYKAL
                     MEAGEDVGLATVYRVLTQFEAAGLVERHNFDGGHAVFELADSGHHDHMVCVDSGEVIE
                     FFDPEIEKLQKEIVKQHGFELVDHNLVLYVRKKK"
     gene            4742..>4818
                     /locus_tag="VLF16_12465"
     CDS             4742..>4818
                     /locus_tag="VLF16_12465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019406369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HSX71733.1"
                     /translation="MQNTKLLPSLTLVGLFALAGCSFPGV"
BASE COUNT          779 a         1606 c         1510 g          923 t
ORIGIN      
        1 gccgtagcct tgtcgccggc ctcggtgacc atcttgcgag tggcgtggac cagaccgtcg
       61 ccctggttgc gggccgcggc cagctcctcg aacttgcggt cttcctcggc attggcctcg
      121 gcgtcacgca ccatgcgctc gatctcgtcg tcggacaggc ccgagctcgc ctggatgcgg
      181 atcttgttct ccttgccggt cgccttgtcc ttggcgccca cgtgcaggat gccgttggcg
      241 tcgatgtcga aagtcacctc gatctgcggc acgccacgcg gggccggcgg aatctcggcc
      301 aggtcgaact tgcccagcga cttgttctgc gcggcctgct tgcgctcgcc ctgcagcacg
      361 tggatggtca cggcgctctg gttgtcgtcg gcggtggaga acacctgcga cttcttggtc
      421 ggaatggtgg tgttcttctc gatcagcggg gtcatcacgc cgcccatggt ctcgatgccc
      481 agggtcagcg gggacacgtc gagcagcagc acgtccttca cgtcaccggc cagcacggcg
      541 ccctggatgg cggcaccgat ggccacggcc tcgtccgggt tgacgtcctt gcgcgcttcc
      601 ttgccgaaga actcggcaac cttctgctgc accagcggca tgcgggtctg gccaccgacc
      661 aggatcacct cgtcgatgct gcccacgtcc aggccggcgt ctttcagcgc gatgcggcac
      721 ggctcgatgg tgcgggacac cagctcctca accagggctt ccagcttggc gcgggaaatc
      781 ttcacgttga ggtgcttcgg gccggtcgca tcggcggtga tgtaaggcag gttgacgtcg
      841 gtctgctgag cggacgacag ctcgatcttg gccttctcgg cggcttcctt caggcgctgc
      901 atggccaggg gatcgccctt caggtcgatg ccggattcct tcttgaattc gtcggcgagg
      961 tagtcgatca gacggatgtc gaagtcttcg ccaccgagga aggtgtcacc gttggtggcc
     1021 agcacctcga actggtgctc gccgtcgact tcggcgatct cgatcaccga cacgtcgaag
     1081 gtaccgccgc ccaggtcgta gacgatcacg gtgtggtcgc ccttggcctt gtccatgcca
     1141 taggccagcg cggccgcggt cggctcgttg atgatgcgct tgacgtccag accggcgatg
     1201 cgaccggcat ccttggtggc ctggcgctgg ctgtcgttga agtaggccgg cacggtgatc
     1261 accgcttcgg tcacggtctc gcccaggtaa tcctcggcgg tcttcttcat cttcttcagc
     1321 acttcggcgc tgatctgcgg cggcgccatc ttctggccct tcacttccac ccaggcgtca
     1381 ccgttgtcgg ccttggcgat cttgtagggg accatcttga tgtctttctg caccacgtct
     1441 tcctcgaagc ggcggccgat caggcgcttc accgcgtaga gggtgttgtg cgggttggtc
     1501 acggcctggc gcttggcgct ctggccgacc agggtctcgc cgtcgttggt gtaggcgatg
     1561 atcgacgggg tggtacgcgc accctcggcg ttctcgatga ccttgacgct gccgttttcc
     1621 aggatggcga cgcaggagtt ggtggtcccc aggtcgatac cgatgatttt gcccatgttc
     1681 actgtctccg aaactctgtc tttaaccttg agtacgtcgc gccttgtcgc gcgccgtcag
     1741 ctaatgaatc gcttgccttg tagatggggc cgttaccgac tatttcaagc ctgctcgtcg
     1801 atcgaaggct gcggtgccag cggcgccttg ctcacgacca ccatggccgg acgcaacaga
     1861 cggccgctga gcagatagcc cttctggaac accttgagca cggtattcgg ctcgacgtgg
     1921 gtgctctcct ccatcgccat ggcctggtga tgctcgggat tgaacggcgt gccgtgcggg
     1981 tcgaccgctt ccagctggtg ccgcttgagg gtgtcctgga acagcttgag agtcagctcc
     2041 atgccctcgc gcatggcctt gctcgcctcg tcggcggcgc tggtcatctc cagcccgcgc
     2101 tccaggctgt cgaccaccgg cagcaggtcg ttggcaaact tctccagcgc gaacttgtgc
     2161 gccttctcca catcctgctc ggcgcggcga cgcacgttct gcaggtcggc cgccatgcgc
     2221 agggactgat cctgggccgc tgccagttgc tcctcgaggg cctgcacgcg tgccgccgcc
     2281 tcgtcgccga cagccgcttc gggcgccagt tgctcttccg gggtcgggtt gtccaggttc
     2341 tgctcgtctg ccattgggtc ctcctgtgat tgctcggcgg gttctgaccc gcgcttcttg
     2401 ccgcctatat gggggccacg cacaaggttt caagggttat tgccgcggca aaacaaaaca
     2461 ctgtataaat acccagcaca aattatcgag ggcgctctcc atgctggtgc acctgtccat
     2521 ccacaactac gccatcgtcg aacacctgga tctggagctg gaacgcggca tgtccgtgat
     2581 caccggcgag accggcgccg gcaagtcgat catgctcgat gccctgggcc tggccctggg
     2641 cgaccgcgcc gacagcggcg tagtgcgccc cggcgcggac aaggccgaca ttctcgccag
     2701 cttcgatctg gaagacatcg ccgaggcccg cgcctggctc gccgaacgcg acctggacaa
     2761 cgacggcccg tgcatcctgc gccgcgtcat caccagcgag ggccgctcgc gcggctacat
     2821 caacggcgcg ccctgcccgc tcggcgacct caaggccctg ggcgagctgc tgatcgatat
     2881 ccacagccaa cacgagcacc agtcgctgct caagcccgac acccatcgcc gcctgctcga
     2941 cgaatatgcc ggcagccagg agctggcgcg ccaggtgcag ctggccgccc agcgctggcg
     3001 ccagacccgc caggagctgc agcgcctgtc ctcgaccggc gacgagcagc gcgcccgtca
     3061 ccaattgctc agctaccagc tggaagagct ggagaacctg gccctgggcg acaacgaact
     3121 ggaacagctg gagcaagacc acaaaaccct gagcagcgcc gaacaactgc tcggcgcttg
     3181 tcgccaggtc ctcgagctgt gcagcgagag cgacgccggc aacgtgctgt cggcactcac
     3241 cgccagcctc aatcggctca gcggtttcac cagccagccg agcgcgctgg gcgaggcgac
     3301 caacctgctg gccagcgcac agatccaggt cgaggaagcg gtcggcgaac tgaatcgttt
     3361 cgtcgatcac ttcgacgccg atccccagcg ccagcagcag atcgaggaac gcctggacgc
     3421 gatctatagc ctggcgcgca agcaccgcgt acagcccttc gagctggccg aactgcagca
     3481 gcgcctgctg gaagaactcg agagcctcaa tgccgacgac gaggcggtcg agcgactcgg
     3541 cgaagagttg gccgcctacg cgcgtcacta tcaggagaag gccgccgaac tgagcaccct
     3601 gcgccatcag gccgccgaac gcctggcgag cgccgtgcag gtggaaatgc aggatctcgg
     3661 catgcccggc ggccgcttca acatcgagct atcgaccgcc ggcagcgacg agccgcagcc
     3721 acatggactc gaacaggtcg agttcctggt cagcgccaac cccggccagc ccatcaagtc
     3781 gctggccaag gtcgcctcgg gtggcgagct gtcacgcatc agcctggcca tccaggtgat
     3841 caccgcgcag acctcgcgcg tgccgaccct ggtattcgac gaggtggacg tcggcatcgg
     3901 cggccccacc gccgaagtgg tcggccagtt gctgcgccgt ctcggcgagc gcggtcaggt
     3961 gctgaccgtg acccacctgc cgcaggtggc ggcgcagggt caccagcacc tgttcgtgca
     4021 caaggcgcgc ggcaaggaca gtacgcagac ggcagtagcc aacctggcgc cggaaggccg
     4081 gatcgaggag atcgcgcgca tgctcggcgg cgtcgacctc accgaggaat ccctggctca
     4141 cgctcgcaag atggtgacca aggcccaggc ctgagccaca gccacaaaaa aaggcgcccc
     4201 gcagggcgcc tttttattcg gttgaacctg cgcttatttc ttcttgcgca cgtacagcac
     4261 cagattgtgg tcgaccagct cgaaaccgtg ctgcttgacg atctctttct gcagcttctc
     4321 gatctccgga tcgaagaact cgatcacctc gccggaatcc acgcagacca tgtggtcgtg
     4381 gtggccactg tcggcgagtt cgaacacggc gtgaccgccg tcgaaattgt ggcgttcgac
     4441 caggccggcg gcctcgaact gggtgagtac ccggtagacg gtggcgaggc ccacgtcttc
     4501 gccggcctcc atcagcgcct tgtacacatc ctcggcgctc atgtggcgct gcccggaggt
     4561 ggccgagtcg agcatttgca gaattttcac acgcggcagg gtgaccttga ggccagcttt
     4621 gcgcagttcg ttgttttcaa ccatggtcgg ctttctcgtg gttgctgctt cgcagctccc
     4681 gtttatgcgg gtatgatcgg ggtttaattt gcccagccaa gatagtggaa gtcacccacc
     4741 gatgcaaaac accaagctct tgcccagcct caccctcgtg ggtctgttcg cactcgccgg
     4801 ctgttcgttt cccggggt
//
LOCUS       DATIHC010000753         2149 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_9263, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000753 DATIHC010000000
VERSION     DATIHC010000753.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2149
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9263"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..343)
                     /locus_tag="VLF16_12470"
     CDS             complement(<1..343)
                     /locus_tag="VLF16_12470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014597595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015129 - lactate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015727 - lactate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HSX71734.1"
                     /translation="MSSGLLAFLAFSPILLAAVLLIGLRWPARRAMPLVYLLTAGIGL
                     TVWDMSLNRVLASTLQGLVITVGVLWIIFGAILLLNTLKHSGGITAIRTGFATVSPDR
                     RIQAIIIAWLFG"
     gene            630..1397
                     /locus_tag="VLF16_12475"
     CDS             630..1397
                     /locus_tag="VLF16_12475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FCD domain-containing protein"
                     /protein_id="HSX71735.1"
                     /translation="MEVGQLRQRRLSDDIVERLETMILEGTLKAGERLPAERLLAERF
                     GVSRPSLREAIQKLVAKGLLVSRQGGGNYVAAGLGSTFSDPLLHLLESNPDAQRDLLE
                     FRHTLEGSCAFYAAQRATPVDHERLRAAYDELQRCYAPDSKASRAEEGAADARFHLAI
                     AEASHNAVLLHTIRGLFDLLKHNVVTNIGGMYLQRSETRERLREQHRALYEAIIERRA
                     GEARELSNHHIHYVQEVLAEAQQEAKRLERSQRRQGL"
     gene            complement(1480..1962)
                     /gene="smpB"
                     /locus_tag="VLF16_12480"
     CDS             complement(1480..1962)
                     /gene="smpB"
                     /locus_tag="VLF16_12480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HSX71736.1"
                     /translation="MAKQKKHPTGTIALNKKALHDYFIEHKFEAGLVLSGWEVKSLRA
                     GKAQLVDSYILLKDDEAWLMGCHITPLKTASTHVIADPTRTRKLLLNKRELDKLFGSV
                     QQKGYTCVALSIYWKAHLIKCEIALAKGKKDFDKRHTEKERDADREVQRAMRSKGKDE
                     "
BASE COUNT          374 a          644 c          741 g          390 t
ORIGIN      
        1 agccgaacag ccaggcgatg atgatggcct ggatgcgacg gtccgggctg acggtggcga
       61 agcctgtgcg aatcgcggtg atgccgccgg agtgcttcag ggtgttcagc agcaggatgg
      121 cgccgaagat gatccacagc acgccgacgg tgatcaccag gccttgcagg gtcgaggcca
      181 atacccggtt gagactcatg tcccatacgg tcaggccgat gccggcggtg aggaggtaga
      241 ccagcggcat ggcgcgcctg gccggccagc gcaggccgat cagcagcacc gcggcgagca
      301 ggatgggaga aaaggcgaga aaggctagga gtccggagga catggatgag tactccgtca
      361 aagcgctgcc gggtgcggca gtcggtgggc gatgagcatt gggattacct cggcgcattc
      421 ttggaattgt tcgtagcgct ccatgaaatt ggtaatacca atttacaagg tagcccggcc
      481 agagtaaaag tcgaccttcg ctcctgtcaa ttttggcgct tgcgactttc gtcgaagcac
      541 cgccgcttgc ccgcgtgggg cgggcgacat aggcttgccc gaaaatcggt cgcggcgctg
      601 cgcggctggt caaaccagtg ggagtgcgta tggaagtggg gcagctgagg cagcgccgcc
      661 tgtcggacga catcgtcgaa cggctagaaa cgatgattct cgagggcact ctcaaggccg
      721 gtgaacgcct gccggcggaa cggctattgg ccgagcgctt cggcgtgtcg cggccatcgc
      781 tgcgcgaggc gatccagaag ctggtggcca agggcttgct ggtcagccga cagggtggcg
      841 gcaactatgt ggcggcaggg ctgggctcga ccttcagcga cccgctgctg cacctgctgg
      901 agagcaatcc ggacgcccag cgcgacctgc tggagttccg ccacacgctg gaaggctcct
      961 gcgccttcta tgcggcccag cgcgccacgc cggtcgacca tgagcgcctg cgcgccgcct
     1021 acgacgaact gcagcgctgc tacgcaccgg acagcaaggc cagccgggcc gaggagggcg
     1081 cggcggatgc gcgctttcac ctggccattg ccgaggccag ccacaacgcc gtgctgctgc
     1141 acaccatccg cggcctgttc gacctgctca agcacaacgt ggtgaccaac atcggcggca
     1201 tgtacctgca gcgcagcgag acccgcgagc ggctgcgcga gcagcaccgg gcgctgtacg
     1261 aggcgatcat cgagcgccgc gcgggcgaag cgcgcgagct gtccaatcac cacatccact
     1321 atgtgcagga ggtgctggcc gaggcgcagc aggaggccaa gcggctggag cggtcgcagc
     1381 gtcggcaggg gctttaaggg cgggctcgaa cgctcgcggc atggccgttt gcaccggaga
     1441 tgcgggccag aaaaaagggc ggatgatccg ccctttgtct tattcgtcct tgcccttgct
     1501 gcgcatggcg cgctggactt cgcgatcggc gtcgcgctct ttctcggtat ggcgcttgtc
     1561 gaagtccttc ttgcccttgg ccagtgcgat ctcgcacttg atcaggtggg ctttccagta
     1621 gatcgacagg gctacgcagg tgtagccctt ctgctgcacc gagccgaaca gcttgtccag
     1681 ttcgcgcttg ttcagcagca gcttgcgggt gcgcgtgggg tctgcgatga cgtgagtgct
     1741 ggctgtcttc agcggggtga tgtggcatcc catcagccag gcttcgtcgt ctttcagcag
     1801 gatatagctg tctaccagtt gcgccttgcc ggcgcgcagg ctcttcactt cccagccgga
     1861 caggaccagg ccggcctcga acttgtgctc gatgaagtag tcgtgcagcg ccttcttgtt
     1921 cagcgcgatg gttccggtgg ggtgtttctt ctgcttggcc atagggcgcg cattataggg
     1981 agtcggcgcg aacctggcga caggtgcgct tgagggggca ggtcgaattc cgcacaatgc
     2041 gcgctccgtg gcgtcggcag tgcggcgcag cagtttcagg aatccaaggc tgatgagcac
     2101 ccgtatccaa cgctcggccc tgttgcccta tccggcgcag gccctcttc
//
LOCUS       DATIHC010000754         2201 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13653, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000754 DATIHC010000000
VERSION     DATIHC010000754.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2201
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13653"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..703
                     /locus_tag="VLF16_12485"
     CDS             <1..703
                     /locus_tag="VLF16_12485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013714206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSX71737.1"
                     /translation="REGRSWQVLAQHLPSYDSLFDQIGNDPACPEVFQLLETIRRWRF
                     YDHFRTDADAPARQPQLGTRTPVLHHDGRDLAAALQTIREIGDRQALEQAIADAFPGS
                     ELSIDFQPGGRFAVALRQEGLLRPLSAAELSDGTLRYLLLVAALLTPRPPSLMVLNEP
                     ETSLHPDLLPALGRLIIEASRHTQVWVVSHASRLIAALEQHPECNSIVLDKSLGQTAI
                     QGQGMLDEPAWHWPD"
     gene            complement(810..1712)
                     /locus_tag="VLF16_12490"
     CDS             complement(810..1712)
                     /locus_tag="VLF16_12490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016491102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HSX71738.1"
                     /translation="MNLSLYLLTVLIWGTTWIALKLQLGEVAIPLSIAYRFTLAAVVL
                     FAVLLLSRRLQRLDRRGQLLCLAQGLCLFCLNFMCFYTASQWIPSGLVAVIFSTATLW
                     NALNARIFMGRRIAANVLAGGGLGLLGLGLLFWPELAHHEASRETLLGIGLAVLGTLC
                     FSAGNLLSSLQQQAGLKPLTTNAWGMLYGALLLFGYCLVSGVPFTFEMNTRYIGSLLY
                     LAIPGSVIGFTAYLTLVGRMGPERAAYCTVLFPVVALNISVFVEGYQWTAPALLGLGL
                     VMLGNVLVFRKTGPTATPAPARNA"
     gene            1852..>2201
                     /locus_tag="VLF16_12495"
     CDS             1852..>2201
                     /locus_tag="VLF16_12495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018927146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSX71739.1"
                     /translation="MAALEQNLVFQSLAGSPHAHLLRGAELGDELAAAQWSNRDDARD
                     YQGPSHHTLSCYLAGGTGTFRRERPGAKGSPNTLCVLPAGHESSWVINGDIQLAHLYV
                     SPERFAASAVALLDR"
BASE COUNT          383 a          801 c          724 g          293 t
ORIGIN      
        1 gcgcgagggc cgcagctggc aggtgctggc ccagcacctg ccgagctacg acagcctgtt
       61 cgaccagatc ggcaacgatc cggcttgccc ggaggtgttc cagctgctcg agacgattcg
      121 ccgctggcgc ttctacgatc acttccgcac cgacgccgat gcgccggcac gccagccgca
      181 gctgggcacc cgcaccccgg tgctgcacca cgacggccgc gacctggccg cggccctgca
      241 gaccatccgc gagatcggtg atcgccaggc gctggagcag gccatcgccg acgccttccc
      301 cggctccgag ctgagcatcg acttccagcc cggcgggcgc ttcgccgtgg cgttgcgcca
      361 ggaaggcctg ctacgcccgc tatcggccgc cgaactgtct gacggcaccc tgcgctacct
      421 gctgctggtg gccgccctgc tcacgccgcg gccgccatcg ctgatggtgc tcaacgagcc
      481 ggagaccagc ctgcacccgg atctgctgcc ggcgctggga cgcctgatca tcgaggcctc
      541 caggcacacc caggtgtggg tggtgtccca cgccagccgg ctgatcgccg cgctggagca
      601 gcacccggag tgcaactcca tcgtcctcga caagagcctg gggcagaccg ccatccaggg
      661 ccagggcatg ctcgacgagc cggcctggca ctggccggat tagcggcacg ccgggtcgcc
      721 gcggcgcaag cgcatcccgg tgcgcacggc gcaccctaca tcactgacaa ggtgcgccat
      781 gcgcaccgaa accctgtgcg cggagcaccc tacgcgttac gcgccggggc tggggtggcg
      841 gtcggtccgg tcttgcggaa caccagcacg ttgccgagca tcaccagccc caggcccagt
      901 agcgccggcg ccgtccactg gtagccctcg acgaacaccg agatgttcag cgccaccacc
      961 gggaacagca cggtgcagta cgcagcgcgc tccggcccca tgcgcccgac cagggtcagg
     1021 taggcggtga agccgatcac cgatccggga atcgccaggt acagcagaga gccgatgtag
     1081 cgggtgttca tctcgaaggt gaacggcacg ccgctgacca ggcagtagcc gaacaacagc
     1141 agcgcgccat acagcatgcc ccaggcattg gtggtcagcg gcttgagccc ggcctgctgc
     1201 tgcaggctgg acagcaggtt gccagccgag aagcacagag tgccgagcac ggccaggccg
     1261 atgcccagca gcgtctcgcg gctggcctcg tggtgggcca gctcgggcca gaacaacagg
     1321 cccaggccga gcagccccag accgccgccg gccagcacat tggcggcgat cctacgcccc
     1381 atgaagatcc gcgcgttgag cgcgttccac agggtggccg tggagaagat caccgccacc
     1441 agcccgctgg ggatccactg gctggccgtg tagaaacaca tgaagttgag gcagaacagg
     1501 cacaagccct gcgccaggca cagcagctgg ccgcgccggt ccaggcgctg caggcggcga
     1561 ctgagcagca gcacggcgaa cagcacgacg gcggccaggg tgaagcggta ggcgatggac
     1621 agcgggatgg ccacctcgcc cagttgcagc ttgagggcga tccaggtggt gccccagatc
     1681 agcacggtga gcaggtacag cgacaggttc atggcaggct ccttgatcac gccagtctgc
     1741 aggcctcgtc gttgccacgc ttgcacaaac ttgcgcttat ctaacgccca gcgctggcac
     1801 cgacctgcca tgggagtagg atggcaggca ttcccacccg gcatccgccc catggccgca
     1861 ctcgaacaga atctggtctt ccagtcgctc gccggctctc cccacgcgca cctgctgcgc
     1921 ggcgccgagc tgggcgacga actggccgcg gcgcagtgga gcaaccgcga cgatgcccgc
     1981 gactaccagg ggccgagcca ccacacgctg tcgtgctacc tggccggagg caccggcacc
     2041 ttccgccgcg agcgccccgg cgccaagggc tcgccgaaca cgctgtgcgt gctgccggca
     2101 ggtcacgagt cgtcctgggt gatcaacggc gacatccagc tggcccacct ctacgtcagc
     2161 cctgagcgct tcgccgccag cgccgtcgcc ctgctcgacc g
//
LOCUS       DATIHC010000755         3413 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37082, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000755 DATIHC010000000
VERSION     DATIHC010000755.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3413
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37082"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1172)
                     /locus_tag="VLF16_12500"
     CDS             complement(<1..1172)
                     /locus_tag="VLF16_12500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019396103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HSX71740.1"
                     /translation="MQCPSPSVPPVLAVKPRLFRQILLTLLGIVLVLGCGYAGYRLSE
                     AAGIRALAESGERQLELNARAVESEINKYTYLPSLLELESNVSRLLLTPGRYRRQRVN
                     DYLEGLNRRAGSLAVYVLDIDGRVVATSNWNQRDSYLGEDLSFRDYYKQAVQGAPGRF
                     YGIGSTTGEPGYYLAHGLRGNDRVIGVAVVKVRLDALEKRWADARVEAHVSDENGIII
                     LSSDPARRLKSVRPLDAAGRERLARSLQYHWAALEELQLLARHALGGGLEEVRLNGAD
                     GRPLDYLQQSRALSDTPWHLTLLTPLAEQRSAAVSHGLLAGVACALLIFGGLALNQRR
                     KVITTRLAAREALQQANADLERKIAERTLDLSASNRLLQAEVREREQTEANLRQAQ"
     gene            complement(1332..2066)
                     /locus_tag="VLF16_12505"
     CDS             complement(1332..2066)
                     /locus_tag="VLF16_12505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HSX71741.1"
                     /translation="MISIQNVNKWYGDFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLI
                     KCVNALEPFQKGDIVVDGTSIADKNTNLPKLRSRVGMVFQHFELFPHLSITENLTIAQ
                     VKVLGRSKAEATEKGLALLDRVGLKEHAHKHPGQLSGGQQQRVAIARALAMDPVVMLF
                     DEPTSALDPEMVNEVLDVMVQLANEGMTMMCVTHEMGFARKVADRVIFMDAGRIVEDC
                     PKEEFFGDINARSERAQQFLNKILQH"
     gene            complement(2063..2731)
                     /locus_tag="VLF16_12510"
     CDS             complement(2063..2731)
                     /locus_tag="VLF16_12510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250031.1"
                     /note="The N-terminal region of this protein, as described
                     by TIGR01726, is a three transmembrane segment that
                     identifies a subfamily of ABC transporter permease
                     subunits, which specificities that include histidine,
                     arginine, glutamine, glutamate, L-cystine (sic), the
                     opines (in Agrobacterium) octopine and nopaline, etc;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_process: GO:0015837 - amine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HSX71742.1"
                     /translation="MMDFSAIVPALPGLWNGMMMTLQLMVLGVLGGVVLGTLLAMARL
                     SHNRLLANAAATYVNYFRSIPLLLVITWFYFAVPFILRWITGEDTPVGAFTSCLVAFV
                     MFEAAYFCEIVRAGIQAIPKGQMGAAQALGMSYGQTMRLIILPQAFRKMTPLLLQQSI
                     ILFQDTSLVYTVGLMDFLNAARSRGDILGQPHEFLIFAGLVYFTISFAASQLVKLLQK
                     RLAV"
     gene            complement(2728..3411)
                     /locus_tag="VLF16_12515"
     CDS             complement(2728..3411)
                     /locus_tag="VLF16_12515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HSX71743.1"
                     /translation="MDWFVTGLGWTIAIALTGWLIALALGSLLGVMRTVPNRWISGIA
                     TCYVEVFRNVPLLVQLFLWYFLVPDLLPEPLEMWFKQDLAPATSAFISVVVCLGLFTA
                     ARVCEQVRTGIQALPKGQLAAGYALGFRLPQIYRDVLLPQAFRIIIPPLTSEFLNIFK
                     NSSVASLIGLMELLAQTKQTAEFSANLFEAFTLATLIYFTLNMSLMLLMRLVEKKVAV
                     PGLISVGGK"
BASE COUNT          561 a         1081 c         1222 g          549 t
ORIGIN      
        1 tcctgggcct ggcgcaggtt ggcctcggtc tgctcgcgct cgcgcacctc ggcctgcagc
       61 aggcggttgc tggcggagag gtcgagggtg cgttcggcga tcttgcgttc caggtcggcg
      121 ttggcctgtt gcagcgcctc gcgggcggcc aggcgggtag tgatcacctt gcgccgctgg
      181 ttcagcgcca ggccgccgaa gatcagcagg gcgcaggcca cgccggccag cagtccgtgg
      241 ctgacggcgg cgctgcgctg ctccgccagc ggcgtgagca gggtcaggtg ccagggtgtg
      301 tcggacagcg cgcggctctg ctgcaggtag tccagcggcc ggccatcggc accgttcagg
      361 cggacttcct cgaggccgcc gccgagggca tggcgggcaa gcagctgcag ctcctcgagc
      421 gccgcccagt gatattgcag gctgcgcgcc aggcgctcgc ggccggcggc gtccagcggc
      481 cgcaccgact tgagccggcg cgccgggtcg ctgctgagga tgatgatgcc gttctcgtcg
      541 ctgacatggg cctcgacgcg ggcgtcggcc cagcgtttct ccagggcgtc caggcgcacc
      601 ttgaccaccg ccacgccgat cacccggtcg ttgccgcgca ggccgtgggc caggtagtag
      661 ccaggctcgc cggtggtgct gccgatgccg tagaagcgcc cgggcgcgcc ctgcaccgcc
      721 tgcttgtagt agtcgcggaa cgacaggtcc tcgcccaggt agctgtcacg ctggttccag
      781 ttgctggtgg cgaccacccg gccgtcgatg tcgagcacgt acacggccag gctgccggcg
      841 cgccggttga ggccctcgag gtagtcgttg acgcgctggc ggcggtagcg cccgggggtc
      901 agcagcaggc ggctgacgtt gctctccagc tccagcaggc tgggcaggta ggtgtatttg
      961 ttgatctcgc tctcgaccgc gcgggcattg agctccagct gccgctcgcc gctctcggcc
     1021 agggcgcgga tgccggcggc ctcgctcagg cggtagccgg cgtagccgca gccgagcacc
     1081 aggacgatgc ccagcagggt cagcaggatc tggcgaaaca ggcgtggctt cacggcgagc
     1141 acgggcggga cgctggggga ggggcattgc atcacagtcg tccggggctg ggtagggaga
     1201 ggtcgccgcg gtgtcgggat cgtaggacac cccctctccc gtctacggga gaggttgggg
     1261 agagggatcg agtcgcctga actcccccct ctccccggcc ctctccccga ggggcgaggg
     1321 aggcccctcc ctcagtgctg gaggatttta ttaaggaact gctgggcgcg ctcggagcgg
     1381 gcgttgatgt cgccgaagaa ctcctccttg gggcagtcct cgacgatcct gccggcgtcc
     1441 atgaagatca cccggtcggc caccttgcgc gcgaagccca tctcgtgggt cacgcacatc
     1501 atggtcatgc cctcgttggc cagctgcacc atcacatcga gcacctcgtt gaccatttcc
     1561 gggtcgaggg ccgaggtcgg ctcgtcgaac agcatcacca ccgggtccat ggccagcgcg
     1621 cgggcgatgg ccacgcgctg ctgctggccg ccggacagct gacccgggtg cttgtgcgca
     1681 tgctccttga ggccgacacg atcgagcagc gccaggccct tttcggtggc ctcggccttg
     1741 ctgcggccga gcaccttgac ctgggcgatg gtgaggttct cggtgatgct caggtggggg
     1801 aacagctcga agtgctggaa caccatgccg acccgcgaac gcagcttggg caggttggtg
     1861 ttcttgtcgg cgatggaggt gccgtcgacc acgatgtcgc ccttctggaa cggctccagg
     1921 gcgttgacgc acttgatcag ggtcgacttg ccggagccgg acgggccgca caccacgacc
     1981 acttcgccct tcttcacctc ggtgctgcaa tcggtcagca cctggaagtc cccgtaccac
     2041 ttgttgacgt tctggatgga aatcatacgg ctaacctttt ctgcagaagc ttgaccagct
     2101 gcgaggcggc gaagctgatg gtgaagtaca cgaggccggc gaagatcagg aactcatggg
     2161 gctggccgag gatgtcgcca cgcgagcggg cggcgttgag gaagtccatc aggcccacgg
     2221 tgtagaccag cgaggtgtcc tggaacagga tgatgctctg ctgcagcagc agcggcgtca
     2281 tcttgcggaa ggcctgcggc aggatgatca ggcgcatggt ctggccgtag ctcatgccga
     2341 gggcctgggc ggcgcccatc tggcccttgg ggatggcctg gatgccggcg cggacgatct
     2401 cgcagaagta ggccgcctcg aacatcacga aggccaccag gcacgaggtg aaggcgccga
     2461 ccggggtgtc ctcgccggtg atccagcgca ggatgaaggg cactgcgaag tagaaccagg
     2521 tgatcaccag cagcagcggg atggagcgga aatagttgac gtaggtggcg gcggcattgg
     2581 ccagcaggcg gttgtgcgac agccgcgcca tggccagcag ggtgcccagc accacgccgc
     2641 cgagcacgcc cagcaccatc agctgcaggg tcatcatcat gccgttccac aggcccggca
     2701 gggccgggac gatagcggag aaatccatca cttgcccccc acggagatca ggccgggcac
     2761 cgcgactttc ttctccacca ggcgcatcag cagcatcagg ctcatgttca gggtgaagta
     2821 gatcagtgtg gccagggtga aggcctcgaa caggttggcg ctgaattcgg cggtctgctt
     2881 ggtctgcgcc agcagctcca tgaggccgat cagcgaggcc accgaggagt tcttgaaaat
     2941 gttgaggaac tcgctggtga gcggcgggat gatgatgcgg aaggcctgcg gcagcagcac
     3001 gtcgcggtag atctgcggca ggcggaagcc cagcgcgtag ccggcggcca actggccctt
     3061 gggcagcgcc tggatgccgg tgcgcacctg ctcgcagacg cgcgcggcgg tgaacaggcc
     3121 aagacacacg accacgctga tgaaggccga ggtggccggc gccaggtcct gcttgaacca
     3181 catctccagc ggctcgggca gcaggtccgg caccaggaag taccagagga acagctgcac
     3241 cagcagcggc acgttgcgga acacttccac gtagcaggtg gcgatgccgc tgatccagcg
     3301 gttcggcacg gtgcgcatca cgccgagcag ggagcccagc gccagggcga tcagccagcc
     3361 ggtgagcgcg atggcgatgg tccagcccag gccggtgacg aaccaatcca ggt
//
LOCUS       DATIHC010000756         2621 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4427, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000756 DATIHC010000000
VERSION     DATIHC010000756.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2621
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4427"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..132
                     /locus_tag="VLF16_12520"
     CDS             <1..132
                     /locus_tag="VLF16_12520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSX71744.1"
                     /translation="TLEDLERAHISAVLASSSTLEQAAQTLGIDVSTLYRKRKQYGL"
     gene            129..1904
                     /locus_tag="VLF16_12525"
     CDS             129..1904
                     /locus_tag="VLF16_12525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017477985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSX71745.1"
                     /translation="MKLRNQLFFSISALITLALLGLVLGILSVAMLARTQNDAMERNL
                     EMLSAGLAMRQELGEQLMLILSDKLDRPALTASSERFRKAMAKAHTSALDDADQQSLL
                     EIERAYLGFEQRLKNPVDVRRRLLADDQFVLLLKAVRDRLTATQQRYVASVDLEQQQA
                     RQHAWMISGLLGLIGVAVLLIGFLTAHSVAQRFGRPIEALTDAADQIGRGDFQVTLPI
                     SKEVELASLTRRFGQMAEALRQYRASNVAALLAGQRRLQAVLDGIDDGLLIFDRDGLL
                     EHGNPVAQNQLGWEELPIGAPLHQLLPQEALQAQLEQALAGQHPSRHGEDLQVGSSGE
                     ERLFSYNLTPVSDDSGEIIAAVMLLRDVTRLRAFERVRSEFVLRASHELRTPVTGMHM
                     AFELLRERLHFSDSSREHDLLVTVGDEMQRLLRLINDLLDFSRYQNGLQRLELQLCDP
                     GDLLDQAARRFASSAEERQVEMHVDLPEGLPPLQLDRMQLERVLDNLIGNALRHSHPG
                     GYILLQARCQGDRLFISVEDDGEGIPHGQQARIFEPFVQVGRRKGGAGLGLALCQEIV
                     HLHGGRIGVKSQPGQGARFYFSLPI"
     gene            2048..>2621
                     /locus_tag="VLF16_12530"
     CDS             2048..>2621
                     /locus_tag="VLF16_12530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012054083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HSX71746.1"
                     /translation="MLALIAQHPLTLGVGLLLVDLACWRLLPAGAKVLRVLLRLGIFI
                     AYSLAIISAGMSPLQPPPWSEPALNMLGSALGIAWWLLFARTLTVVLGVLLMPRSGHT
                     GRLLQDVLGAMIFLAAMVAAAAYIMQLPVKGLLATSGVVAIVIGLALQNTLGDVFSGI
                     VLNTTKPYRLDDWVSIDGIEGKVIEIDWRAT"
BASE COUNT          405 a          950 c          861 g          405 t
ORIGIN      
        1 accctggagg atctcgagcg cgcccacatc tccgccgtac tggcctccag ctcgaccctc
       61 gagcaggcgg cccagaccct cggcatcgac gtctccaccc tgtaccgcaa gcgcaagcaa
      121 tacggcctat gaagctgcgc aaccagctct tcttcagcat cagcgcgctc atcaccctgg
      181 ccctgctcgg cctggtgctg ggcatcctca gcgtggcgat gctggcgcgc acgcagaacg
      241 acgcgatgga gcgcaacctg gagatgctca gcgccggcct ggccatgcgc caggagctgg
      301 gcgagcagtt gatgctgatc ctcagcgaca agctcgaccg ccccgcgctg acggcgtcct
      361 cggagcgctt ccgcaaggcc atggccaagg cccataccag cgccctggac gatgccgacc
      421 agcagtcgct gctggagatc gagcgggcct acctgggctt cgagcagcgc ctgaagaacc
      481 cggtggacgt gcgtcggcgc ctgctcgccg acgaccagtt cgtgctgctg ctcaaggcgg
      541 tgcgcgaccg ccttaccgcg acccagcagc gttatgtcgc ctcggtggac ctggaacagc
      601 agcaggcgcg ccagcacgcc tggatgatca gcggcttgct cggcctgatc ggcgtggccg
      661 tgctgctgat cggattcctc actgcccaca gcgtggcgca gcgtttcggc cgccccatcg
      721 aggcgctgac cgatgccgcc gaccagatcg gccgcggcga tttccaggtc accctgccga
      781 tcagcaagga ggtcgagctg gcctcgctga cccggcgctt cggccagatg gccgaggccc
      841 tgcgccagta ccgcgccagc aacgtggccg cgctgctggc cgggcagcga cgcctgcagg
      901 cggtgctcga cggcatcgac gacggcctgc tgatcttcga ccgcgatggc ctgctcgaac
      961 acggcaaccc ggtggcgcag aaccagctcg gctgggaaga gctgccgatc ggcgcaccgc
     1021 tgcaccagtt gctgccgcag gaggcgctgc aggcgcagct ggaacaggcc ctggccggcc
     1081 agcacccgtc gcgccacggc gaagacttgc aggtcggcag cagcggcgag gaacgcctgt
     1141 tcagctacaa cctcaccccg gtgagcgacg acagcggtga gatcatcgcc gcggtgatgc
     1201 tgctgcgcga cgtcacccgc ctgcgcgcct tcgagcgggt acgcagcgag ttcgtcctgc
     1261 gcgcctccca tgagctgcgc acgccggtca cgggcatgca catggccttc gagctgctgc
     1321 gcgagcgcct gcacttctcc gacagcagcc gcgagcacga tctgctggtg accgtgggcg
     1381 acgagatgca gcgcctgctg cgcctgatca acgacctgct ggacttctcc cgctaccaga
     1441 acggcctgca gcgcctggag ctgcagctgt gcgacccggg cgacctgctg gaccaagcgg
     1501 cccggcgctt cgcctcgagc gccgaggagc gccaggtcga gatgcacgtc gacctgcccg
     1561 agggcctgcc gccgctgcag ctcgaccgca tgcagctgga gcgcgtgctg gacaacctga
     1621 tcggcaacgc gctgcgccac agccaccccg gcggctacat cctgctccag gcccgctgcc
     1681 agggcgaccg cctgttcatc agcgtggaag acgacggcga aggcatcccg cacggccagc
     1741 aggcgcgcat cttcgagccc ttcgtccagg tcggccgccg caagggcggc gccggactgg
     1801 gcctcgccct gtgccaggaa atcgtccacc tgcacggcgg ccgcatcggc gtgaaatcgc
     1861 aaccggggca gggcgcacgc ttctatttct cgctgccgat ctgagccggg cgccgcgtcg
     1921 atgccgcaga ttcccgcggc cactagcgga cgcccgggtc agaccaaggt gggggaaaag
     1981 gccttcatcg ctttgccggc aatcccggca tactgggcgc gcttcctccc ctgtcgcgga
     2041 accctccatg ctcgcactga ttgcgcaaca cccgctgacc ctcggtgtcg gcctgctgct
     2101 cgtcgacctc gcctgctggc gcctgttgcc ggccggggcc aaagtcttgc gggtgctgct
     2161 gcgcctgggg atcttcattg cctacagcct ggccatcatc agcgccggga tgagcccgct
     2221 gcagccgccg ccgtggagcg agccggcgct gaacatgctc ggctccgcac tgggtatcgc
     2281 ctggtggctg ctcttcgcgc gcaccctgac cgtggtgctc ggcgtgctgc tgatgccgcg
     2341 cagcggccac accgggcgcc tgctgcagga cgtactgggg gcgatgatct tcctcgcggc
     2401 catggtcgcg gcagcggcct acatcatgca gctgccggtc aagggcctgc tggccacctc
     2461 gggggtggtc gccatcgtca tcggcctggc cctgcaaaac accctcggcg acgtgttctc
     2521 cggcatcgtg ctgaacacca ccaagcccta tcgcctggat gactgggtgt cgatcgacgg
     2581 gatcgagggc aaggtcatcg agatcgactg gcgcgccacc c
//
LOCUS       DATIHC010000757         4338 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4429, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000757 DATIHC010000000
VERSION     DATIHC010000757.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4338
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4429"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            21..689
                     /locus_tag="VLF16_12535"
     CDS             21..689
                     /locus_tag="VLF16_12535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003299655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit D"
                     /protein_id="HSX71747.1"
                     /translation="MSQPTIKSVLLDPIVHNNPIGLQILGICSALAVTSNLKTALVMS
                     IALTLVTGFSNLFISMIRSQIPSSIRMIVQMVIIASLVIVVDQILKAYAYSLSKQLSV
                     FVGLIITNCIVMGRAEAFAMQNPPMLSFFDGIGNGLGYSAMLIVLGVVRELFGAGKLL
                     GYTILPTVNDGGWYQPNGMLLLPPSAFFLIGLIIWALRSWKPQQKEAPAFRMAPQVSD
                     KEAY"
     gene            689..1297
                     /gene="nqrE"
                     /locus_tag="VLF16_12540"
     CDS             689..1297
                     /gene="nqrE"
                     /locus_tag="VLF16_12540"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit E"
                     /protein_id="HSX71748.1"
                     /translation="MEHYLSLFAKAVFIENMALAFFLGMCTFIAISKKVETAIGLGIA
                     VVVVQTITVPANNLIYAYLLKDGALAWAGLPEVDLSFLGLLSYIGVIAAIVQILEMLL
                     DKYVPSLYNALGVFLPLITVNCAIMGGTLFMVERDYNVTESVVYGVGSGFSWALAIAL
                     LAGIREKLKYSDVPDGLQGLGITFITIGLMSLGFMSFGGIQL"
     gene            1453..2676
                     /gene="nqrF"
                     /locus_tag="VLF16_12545"
     CDS             1453..2676
                     /gene="nqrF"
                     /locus_tag="VLF16_12545"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014820915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit F"
                     /protein_id="HSX71749.1"
                     /translation="MGFEIALAIGMFTAIVLALVVVILAARAKLVSSGDVNIVINGER
                     TLTVPAGGKLLQTLAANNVFLSSACGGGGTCAQCKCVVESGGGEMLPTEESHFTKREA
                     REGWRLSCQTPVKQDMHIEVEESVFGVKKWECTVESNPNVATFIKELTLRLPEGESVD
                     FRAGGYVQLECPPHEVAYKDFDIQPEYRGDWDKFNQWKYVSKVDETVIRAYSMANYPD
                     EKGIVKFNIRIASPPPGKDHLPPGQMSSWVFNLKPGNKVTVYGPFGEFFAKDTDAEMI
                     FIGGGAGMAPMRSHIFDQLKRLGSKRKISFWYGARSLREAFYTEEYDQLAAENDNFEW
                     HLALSDPQPEDNWTGLKGFIHNVLFEQYLKDHPAPEDCEFYMCGPPMMNAAVIKMLLD
                     LGVERENILLDDFGG"
     gene            2669..3679
                     /locus_tag="VLF16_12550"
     CDS             2669..3679
                     /locus_tag="VLF16_12550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003462034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0017013 - protein flavinylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HSX71750.1"
                     /translation="MVRSVACLLLASVLLAGCGEKIEEFGGPTMGSHYSLKYLAGEGT
                     PSPQALKAEVDGLLAEVDAQMSTWRADSDLSQFNRLPAGSCRAMPASVLELVRFGETL
                     SGKSEGAFDLTLEPLLDLWGFGPKSRGEAVPSAEQIAAVQSNVGHRHLRIEGTQLCKD
                     AAVEVDLNSVAAGYTVDRIAARLAELGVSSYLLDVTGELRAAGRKPDGSPWRIAIEAP
                     RDDRQVAQKVLELDGVGVSTSGDYRNYFERDGRRYSHTLDPRSGAPISHRLASVTVVD
                     SSTLRADGLSTLLMVLGPENGYAFAEREAIAAFFVTRTDRGFATRATPAFERRFGEGE
                     RP"
     gene            3676..3909
                     /gene="nqrM"
                     /locus_tag="VLF16_12555"
     CDS             3676..3909
                     /gene="nqrM"
                     /locus_tag="VLF16_12555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Na+)-NQR maturation NqrM"
                     /protein_id="HSX71751.1"
                     /translation="MTWVLVFGFMLLVVLGMAIGVIFGRKPIAGSCGGIAALGIEKEC
                     SICGGSREKCEEVNRDKNEHVVDTALAYDATKR"
     gene            4026..>4338
                     /locus_tag="VLF16_12560"
     CDS             4026..>4338
                     /locus_tag="VLF16_12560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSX71752.1"
                     /translation="MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAVVDNRPLVGGNC
                     THLGTIPSKALRHSVRQIMQYNTNPLFRQIGEPRWFSFPDVLKSAERVISKQVASRTS
                     YY"
BASE COUNT          763 a         1430 c         1375 g          770 t
ORIGIN      
        1 gaagaaaggg gaggcatagc atgtcgcaac ccaccatcaa gagcgtgctg ctcgatccga
       61 tcgtgcacaa caaccccatc ggcctgcaga tcctcggcat ctgctcggcc ctggcggtga
      121 cctccaacct caagaccgcg ctggtgatgt cgatcgccct gaccctggtg accggcttct
      181 ccaacctgtt catctcgatg atccgcagcc agatccccag cagcatccgc atgatcgtgc
      241 agatggtgat catcgcgtcg ctggtgatcg tggtggacca gatcctcaag gcctacgcct
      301 attcgctgtc caagcagctg tcggtgttcg tcgggctgat catcaccaac tgcatcgtca
      361 tgggccgggc cgaggccttc gccatgcaga acccgccgat gctgtcgttc ttcgacggca
      421 tcggcaacgg cctgggctac agcgccatgc tgatcgtcct gggcgtggtg cgcgagctgt
      481 tcggcgccgg caagctgctc ggctacacca tcctgccgac cgtcaacgac ggcggctggt
      541 accagcccaa cggcatgctc ctgctgccgc cgtcggcgtt cttcctgatc ggcctgatca
      601 tctgggcgct gcgcagctgg aagccccagc agaaagaggc gccggcattc cgtatggcac
      661 cgcaggtttc tgacaaggag gcctactgat ggagcactac ctcagcctgt tcgccaaggc
      721 cgtgttcatc gagaacatgg cgctggcctt cttcctcggc atgtgtacct tcatcgccat
      781 ctccaagaag gtggaaaccg ccatcggcct cggcatcgcc gtggtggtgg tgcagaccat
      841 caccgtgccg gccaacaacc tgatctacgc ctacctgctc aaggacggcg cgctggcctg
      901 ggccggcctg cccgaggtgg acctgtcctt cctcggcctg ctcagctaca tcggggtgat
      961 cgcggccatc gtgcagatcc tcgagatgct gctcgataag tacgtgccca gcctgtacaa
     1021 cgccctcggc gtgttcctgc cgctgatcac cgtgaactgc gccatcatgg gcggcaccct
     1081 gttcatggtc gagcgcgact acaacgtcac cgagagcgtg gtctacggcg tcggctccgg
     1141 cttctcctgg gccctggcca tcgcgctgct cgccggcatc cgcgagaagc tcaagtacag
     1201 cgatgtaccg gacggcctgc agggcctggg catcaccttc atcaccatcg gtctgatgtc
     1261 gctcggcttt atgtcgttcg gcggcattca gctgtgaaac accagaaaaa ctactgcgct
     1321 tgcacaggct gtgttgaaaa caggctcgga ctgctcattt acccgcacgt aaactccgca
     1381 tcctcgcctg ttttcgcctt gcctgagctg cgctcgctac gtttttccgg cgtttcaatg
     1441 ggaggttaaa gaatgggttt tgaaatcgca ttagccatcg gcatgttcac cgccatcgtg
     1501 ctggcactgg tggtggtcat cctcgcggcc cgcgccaagc tggtgtccag cggcgacgtc
     1561 aacatcgtca tcaatggcga gcgcaccctc accgtgccgg ccggcggcaa gctgctgcag
     1621 acgctggcgg cgaacaacgt gttcctgtcg tccgcctgcg gcggcggcgg cacctgcgcc
     1681 cagtgcaagt gcgtggtgga aagcggcggc ggcgagatgc tgccgaccga ggaatcgcac
     1741 ttcaccaagc gcgaggcccg cgaaggctgg cgcctgtcct gccagacccc ggtcaagcag
     1801 gacatgcaca tcgaggtgga agagtcggtc ttcggcgtga agaagtggga atgcacggtg
     1861 gagtccaacc ccaacgtcgc caccttcatc aaggagctga ccctgcgcct gccggaaggc
     1921 gagagcgtgg acttccgcgc cggtggctac gtgcagctgg agtgcccgcc gcatgaggtg
     1981 gcctacaagg acttcgacat ccagccggaa tatcgcggcg actgggacaa gttcaaccag
     2041 tggaagtacg tgtccaaggt cgacgagacg gtgatccgcg cctactccat ggccaactat
     2101 ccggacgaga agggcatcgt caaattcaac atccgcatcg cctcgccgcc gccgggcaag
     2161 gatcacctgc cgccggggca aatgtcgtcc tgggtgttca acctcaagcc gggtaacaag
     2221 gtcaccgtgt acggcccgtt cggcgagttc ttcgccaagg acaccgacgc ggagatgatc
     2281 ttcatcggcg gcggcgccgg catggcgccg atgcgctcgc acatcttcga ccagctcaag
     2341 cgtctgggct ccaagcgcaa gatcagcttc tggtacggcg cgcgctcgct gcgcgaggcc
     2401 ttctacaccg aggaatacga ccagctggcc gcggagaatg acaacttcga gtggcacctg
     2461 gcgctgtccg acccgcagcc ggaagacaac tggaccggcc tcaagggctt catccacaac
     2521 gtgctgttcg agcagtacct caaggaccat ccggcccccg aggactgcga gttctacatg
     2581 tgcggcccgc ccatgatgaa cgccgcggtg atcaagatgc tgctggacct cggcgtggag
     2641 cgcgagaaca tcctgctgga cgattttggt ggttagatct gtggcatgcc tgctgctggc
     2701 cagcgtcctg ctggccggtt gcggcgagaa gatcgaggag ttcggcggcc cgaccatggg
     2761 cagccactac tcgctgaaat acctggcggg cgaggggacc ccttcgccgc aggcgctcaa
     2821 ggccgaggtc gacggcctgc tcgccgaggt ggatgcgcag atgtccacct ggcgtgccga
     2881 ttccgacctg tcccaattca atcgcctgcc ggccggcagc tgccgcgcca tgcccgcttc
     2941 ggtgctggag ctggtgcgtt tcggcgagac gctgtcgggc aagagtgagg gcgcattcga
     3001 cctgaccctc gaaccgctgc tcgatctctg gggcttcggc ccgaagtcgc ggggcgaggc
     3061 ggtgcccagc gccgaacaga tcgccgccgt gcagagcaat gtggggcacc gtcacttgcg
     3121 catcgagggc acgcagctgt gcaaggatgc ggccgtcgag gtcgacctca acagcgtcgc
     3181 ggccggctac acggtcgatc gcatcgccgc gcgcctggcc gagctcggcg tcagcagcta
     3241 cctgctggac gtcaccggcg agctgcgtgc ggccgggcgc aagcccgacg gcagcccctg
     3301 gcgcatcgcc atcgaggcgc cgcgcgacga ccgccaggtc gcgcagaagg tgctggagct
     3361 cgatggcgtc ggcgtctcca cctccggtga ttaccgcaac tacttcgagc gcgacggccg
     3421 gcgttactcg cacaccctcg acccacgcag cggcgcgccc atttcccacc ggcttgcctc
     3481 ggtcacggtg gtcgattcat cgaccctgcg cgccgatggt ctgtctaccc tattgatggt
     3541 gctgggaccg gaaaacggtt acgccttcgc cgagcgcgag gccattgccg cattcttcgt
     3601 cacccgcacc gaccggggct tcgccacgcg cgcgacgccc gccttcgaac gccgttttgg
     3661 cgaaggagaa cgcccatgac ctgggttctg gtattcggct tcatgctcct ggtagtgctg
     3721 ggcatggcca tcggtgtgat cttcgggcgc aaacccatcg ccggctcctg cggcggcatc
     3781 gccgccctgg gcatcgagaa ggagtgctcg atctgcggcg gcagtcgcga gaagtgcgaa
     3841 gaggtcaacc gcgataagaa tgagcatgta gtggacacgg cgctcgccta cgacgcgacc
     3901 aagcgctaat gtgccgggca aaatcccacg gctaagctgt gaggacgatt cgacagccgc
     3961 ggccacgggg tgccgcgttc gagccgggcg ccacgcaagc gcccggtgcg agatgaggag
     4021 taagcatggc ggtctacaac tacgacgtgg tggtgctggg ttccggtccg gcgggcgagg
     4081 gcgcggcgat gaacgcggcc aaggccgggc gcaaggtggc ggtggtcgac aaccgcccac
     4141 tggtgggcgg caactgcacc cacctcggca ccatcccgtc caaggcgctg cgccactcgg
     4201 tgcggcagat catgcagtac aacaccaacc cgctgttccg ccagatcggc gagccgcgct
     4261 ggttctcctt ccccgatgtg ctgaagagcg ccgagcgggt gatctccaag caggtcgcct
     4321 cgcgcaccag ctactacg
//
LOCUS       DATIHC010000758         6510 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_45378, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000758 DATIHC010000000
VERSION     DATIHC010000758.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6510
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45378"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2008
                     /gene="infB"
                     /locus_tag="VLF16_12565"
     CDS             <1..2008
                     /gene="infB"
                     /locus_tag="VLF16_12565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HSX71753.1"
                     /translation="AVVERKKEEPRRLEKEKEKPARSDDDDRRDRKHAQHRPAPKDKA
                     PTPRVAPRSTDEEVDGYRGRGGRMKPKKRNQHGFQSPTGPIVRDVAIGETITVGDLAA
                     QMAVKGAEVVKFMFKMGTPVTINQVLDQETAQLIAEEFGHKVKLVSDNALEEQLAESL
                     KFEGEAFHRAPVVTVMGHVDHGKTSLLDYIRRAKVAAGEAGGITQHIGAYHVETDRGM
                     VTFLDTPGHAAFTQMRARGAKATDIVILVVAADDGVMPQTQEAVQHAKAAGVPIVVAI
                     NKMDKPDANPDNIKNGLAALDVIPEEWGGDAPFVGVSAKAGTGVDELLEAVLLQAEVL
                     ELKATPSAPGRGVVVESRLDKGRGPVATVLVQDGTLRQGDMVLVGVNYGRVRAMLDEN
                     GKPIKEAGPSIPVEILGLDGTPDAGDDMTVVADEKKAREVALFRQGKFREVKLARAHA
                     GKLENIFENMGQEEKKTLNIVLKSDVRGSLEALQGSLSGLGNDEVQVRVVGGGVGGIT
                     ESDANLALASNAVLFGFNVRADAGARKIVEAEGIDMRYYNVIYDIIEDVKKALTGMLG
                     SDVRENILGTAEVRDVFRSPKFGAVAGCMVIEGTVHRNRPIRVLRDDVVIFEGELESL
                     RRFKDDVGEVRNGMECGIAVKSYNDVKVGDKIEVFEKVQVARTL"
     gene            2108..2485
                     /gene="rbfA"
                     /locus_tag="VLF16_12570"
     CDS             2108..2485
                     /gene="rbfA"
                     /locus_tag="VLF16_12570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HSX71754.1"
                     /translation="MAKEYSRTQRIGDQMQRELAQMIPREVRDPRLGFVTITAVDVSR
                     DLGHAKVFITVMGENDVEKVKLNLEILNEAAGYLRMLLGKSMKLRSVPQLHFHYDESI
                     SRGAHLSALIERAVAEDSKHRDD"
     gene            2488..3408
                     /gene="truB"
                     /locus_tag="VLF16_12575"
     CDS             2488..3408
                     /gene="truB"
                     /locus_tag="VLF16_12575"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HSX71755.1"
                     /translation="MAQVKRIRRNVSGILILDKPRGMSSNQALQKVRWLLNAEKAGHT
                     GSLDPLATGVLPLCFGEATKFSQYLLDADKGYETVAQLGVTTTTGDAEGEIVERREVT
                     AGRDAVEALLPRFRGEIKQIPPMYSALKKDGQPLYKLARAGEVVEREARSVTIARLEL
                     LALDNAQLRLSVACSKGTYIRTLVEDLGRELGCGGHVAELRRTQAGPFVLAQAVSLEA
                     LEKAHAEGGNEALDQFLLPVDSGLEHWPLLQLSEHSAYYWLHGQPVRAPEAPKFGMVR
                     VTDHTGRFIGIGEVSDDGRIAPKRLISTGA"
     gene            3548..3817
                     /gene="rpsO"
                     /locus_tag="VLF16_12580"
     CDS             3548..3817
                     /gene="rpsO"
                     /locus_tag="VLF16_12580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HSX71756.1"
                     /translation="MALSVEEKAQIVNDYKQAEGDTGSPEVQVALLTANINKLQDHFK
                     ANGKDHHSRRGLIRMVNQRRKLLDYLKGKDTSRYSALIGRLGLRR"
     gene            3986..6091
                     /gene="pnp"
                     /locus_tag="VLF16_12585"
     CDS             3986..6091
                     /gene="pnp"
                     /locus_tag="VLF16_12585"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HSX71757.1"
                     /translation="MNPVIKQFKFGQSTVTLETGRIARQASGAVLVTVDNDVSVLCTV
                     VGAKQADPGKGFFPLSVHYQEKTYAAGKIPGGYFKREARPSEKETLTSRLIDRPIRPL
                     FPEGFLNEVQIICTVVSTSKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHPET
                     GYLLNPNYEQLKASSLDMVVAGTQDAVLMVESEAKELTEDQMLGAVLFAHEEFQAVIK
                     AVGELAAETGKPRWNWTAPAENTALLSAIKAEFGEAISQAYTITIKQDRYNRLDELRD
                     QVVAKFSGEEGQPSSGEVKDAFGLIEYRTVRQNIVDGKPRIDGRDTRTVRGLNIEVGV
                     LDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKRDPFMLHYNFPPYSVGECG
                     RMGATGRREIGHGRLARRGVAAMLPSNDEFPYTIRIVSEITESNGSSSMASVCGASLA
                     LMDAGVPMKAPVAGIAMGLVKEGDKFAVLTDILGDEDHLGDMDFKVAGTSKGVTALQM
                     DIKIQGITEEIMEIALGQALEARLNILGQMNQVISQSRSELSANAPTMLAMKIDQDKI
                     RDVIGKGGATIRGICEETKASIDIEDDGSIKIFGETKEAAEAAKQRVLAITAEAEIGK
                     IYVGKVERIVDFGAFVNILPGKDGLVHISMLSDQRVEKVTDVLKEGQEVEVLVLDVDN
                     RGRIKLSIKDVAAAKASGV"
     gene            6202..>6510
                     /locus_tag="VLF16_12590"
     CDS             6202..>6510
                     /locus_tag="VLF16_12590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015478924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71758.1"
                     /translation="MEITHCRYHPAQPATWHCAPCERDYGDCCVPLNADAPELEPTCP
                     LCAGKLRFLGAANTAQPFWQRIPTFFRYGLQPGPLAFAAALCLASLFMPAWKLLWLAL
                     F"
BASE COUNT         1296 a         2082 c         2046 g         1086 t
ORIGIN      
        1 ggccgtcgtc gagcgcaaga aggaagagcc gcgtcgcctc gagaaggaaa aagagaagcc
       61 ggctcgcagc gatgacgacg accgtcgcga tcgcaagcac gcgcagcatc gtcctgctcc
      121 caaggacaag gcgccgactc cgcgcgtcgc tccgcgcagc accgacgaag aagtcgatgg
      181 ttaccgcggt cgcggcggcc ggatgaagcc gaagaagcgt aaccagcacg ggttccagag
      241 cccgacagga cctattgtgc gcgatgtagc aatcggcgag accattaccg tgggtgacct
      301 ggctgcccag atggcggtca agggcgccga agtggtcaag ttcatgttca agatgggcac
      361 tccggtgacc atcaaccagg tgctggacca ggaaactgcc cagctgatcg ccgaagagtt
      421 tggccacaag gtcaagctgg tcagcgacaa cgccctggaa gagcaactgg ccgaatcgct
      481 gaagttcgaa ggtgaagcct tccaccgcgc gccggtagtg accgtgatgg gtcacgtcga
      541 ccacggtaag acctcgctgc tcgactacat ccgtcgtgcc aaggtagccg ctggcgaagc
      601 cggtggtatc acccagcaca tcggtgccta ccacgtggaa accgaccgcg gcatggtcac
      661 cttcctcgat acccccggcc acgccgcatt cacccagatg cgtgctcgtg gtgccaaggc
      721 caccgacatc gtcatcctgg tggtggcggc cgacgacggt gtgatgccgc agacccagga
      781 agccgtgcag cacgcgaaag cggctggcgt gccgatcgtg gtcgcgatca acaagatgga
      841 caagccggac gccaacccgg acaacatcaa gaacggcctg gctgcgctgg atgtgatccc
      901 ggaagagtgg ggcggcgatg ctccgttcgt aggcgtttcg gccaaggccg gtaccggcgt
      961 cgacgaactg ctggaagccg tgctgctgca ggccgaggtt ctcgagctga aagccacccc
     1021 gtcggctcct ggccgcggtg tcgtggtcga gtcccgtctg gacaagggcc ggggcccggt
     1081 ggctaccgtg ctggttcagg acggtaccct gcgtcagggc gacatggtcc tggtcggcgt
     1141 caactatggc cgcgttcgcg ccatgctcga cgagaacggc aagccgatca aagaagccgg
     1201 cccgtcgatt ccggtcgaga ttctcggcct ggacggcacc ccggatgcgg gtgacgacat
     1261 gaccgtggtc gccgacgaga agaaggcccg cgaagtggcc ctgttccgtc agggcaagtt
     1321 ccgcgaggtc aagctggccc gggctcacgc cggtaagctg gagaacatct tcgagaacat
     1381 gggccaggag gagaagaaga cgctcaacat cgtcctcaag tccgacgttc gtggttctct
     1441 cgaggctttg caaggctcgc ttagcggcct gggcaacgac gaagtgcagg ttcgcgtggt
     1501 cggcggcggc gtcggtggta tcaccgagtc cgatgccaac ctggcgctgg cctccaacgc
     1561 cgtgctgttc ggcttcaacg tgcgtgccga cgccggtgca cgcaagatcg tcgaggccga
     1621 aggcatcgac atgcgctact acaacgtcat ctacgacatc atcgaagacg tcaagaaggc
     1681 gctcaccggt atgctcggca gcgatgttcg cgagaacatc ctcggcaccg ccgaagtgcg
     1741 tgacgtgttc cgttcgccga agttcggcgc cgtcgctggc tgtatggtca tcgagggtac
     1801 cgttcaccgt aaccgtccga tccgcgtact gcgcgatgat gtggtgatct tcgaaggcga
     1861 gctggaatcc ctgcgtcgct tcaaggatga cgtcggcgaa gtgcgtaacg gcatggagtg
     1921 cggtatcgcc gtgaagagct acaacgacgt caaggtcggg gacaagatcg aggtgttcga
     1981 gaaggtccag gtggctcgta cgctctaagc gcgagttgca acacgcgacg cccggccccg
     2041 catcagcgcg gccgggcgtt tgccgctttt gaacccgtac gcaagcgcgg cgggagaggt
     2101 aggaaaaatg gccaaagaat atagccgtac ccagcgcatc ggtgaccaga tgcagcgcga
     2161 gctggcgcag atgattccgc gcgaggtccg cgacccgcgc ctgggcttcg ttaccatcac
     2221 cgccgtggac gtcagtcgcg acctgggcca cgccaaggtc ttcatcaccg tgatgggcga
     2281 aaacgacgtc gagaaggtca agctgaacct ggagatcctc aacgaggccg ccggctatct
     2341 gcgcatgctg ctgggcaagt cgatgaagct gcgcagcgtg ccgcagctgc atttccacta
     2401 tgacgaaagc atctcccgtg gcgcgcatct gtcggcgctg atcgagcgcg ccgtggctga
     2461 agacagcaag catcgggacg actgacagtg gcgcaggtga aacgtattcg tcgcaatgtc
     2521 agcggcatcc tgatcctcga caagccgcgc ggcatgagtt ccaaccaggc cctgcagaag
     2581 gtgcgctggc tgctcaatgc cgagaaggcc gggcacaccg gcagcctcga tccgctggcc
     2641 accggcgttt tgccgctgtg cttcggcgag gcgaccaagt tctcccagta cctgctggac
     2701 gccgacaagg gttacgagac ggtcgcccag ctgggcgtga ccaccaccac gggcgatgcc
     2761 gagggcgaga tcgtcgagcg ccgcgaggtg accgccggtc gggacgccgt cgaggccctg
     2821 ctgccgcgtt ttcggggtga aatcaaacag ataccgccga tgtactccgc cctgaagaag
     2881 gacggccagc cgctgtacaa gctggcccgt gccggcgaag tagtggagcg cgaggcgcga
     2941 tctgttacta tcgcgcgcct ggaattactg gccttggata acgcgcaact gcgcctgtcc
     3001 gtggcctgca gcaagggcac ctacatccgc accctggtcg aggatctcgg ccgcgagctg
     3061 ggttgtggtg gccacgtcgc cgaactgcgc cggacccagg ccggtccgtt cgtactggcc
     3121 caggcggtga gcctggaggc gctggaaaag gcccatgccg aaggcggcaa cgaggcactg
     3181 gatcagttcc tgctgccggt cgacagcggc ctggaacact ggccgctgct gcagttgtcc
     3241 gagcacagcg cctactactg gctgcacggc cagccggtac gcgcgccgga ggcgccgaaa
     3301 ttcggcatgg tgcgggtgac cgaccacacc ggccgcttca tcgggatcgg cgaagtgagc
     3361 gacgacgggc gtatcgcccc gaaacgattg atctctaccg gcgcctgacg cgggtagaac
     3421 ccggagccgg actccgggac cagattcggt cgcaggaccg aaacgagggt ggctgtcagc
     3481 aggcacggtc atacctcttt ttaaaacacg ggactggttc ccggcctgtt cactcaagga
     3541 gcccatcatg gcactgagcg ttgaagaaaa agcccagatc gttaacgact acaagcaagc
     3601 tgaaggcgat accggttctc cggaagtgca ggttgccctg ctgaccgcca acatcaacaa
     3661 gctgcaggac cacttcaagg ccaacggcaa agaccaccac tcccgtcgtg gtctgatccg
     3721 catggttaac cagcgccgca agctgctgga ctacctgaag ggtaaggaca ccagtcgtta
     3781 cagcgccctc atcggtcgcc tgggtctgcg tcgctaatag cgcgcgagcc gcacgcttga
     3841 agctggaagc tcggagccga aagtcgggat accctctcgc tttcggcttc gggctttcag
     3901 cttttagcta tctgcaggaa tgtcacgggc cgactcccgt accttccacc gatttcccca
     3961 aggcaacata gagaaggaaa actccgtgaa tccggtaatc aagcaattca agttcggtca
     4021 gtcgaccgtc accctggaaa ccgggcgcat cgcccgccag gcctccggcg ccgtgctggt
     4081 caccgtcgac aacgacgtca gcgtgctgtg caccgtggtt ggcgccaagc aagccgaccc
     4141 gggcaagggc ttcttcccgc tgtccgtgca ctaccaggaa aaaacctacg ccgccggcaa
     4201 gatcccgggt ggctacttca agcgtgaagc gcgtccttcc gagaaagaga ccctgacctc
     4261 gcgcctgatc gaccgtccga tccgtccgct gttcccggaa ggcttcctca acgaagtgca
     4321 gatcatctgc accgtggttt cgaccagcaa gaagaccgac ccggacatcg ccgccatgat
     4381 cggcacctcc gccgccctgg ccatctccgg tatcccgttc gacggcccga tcggcgccgc
     4441 tcgcgtggcc ttccacccgg aaaccggcta tctgctgaac ccgaactacg agcagctcaa
     4501 ggcgtccagc ctggacatgg tcgtagccgg tacccaagac gccgtactga tggtcgaatc
     4561 cgaagccaaa gagctgaccg aagaccagat gctgggcgcc gtactgttcg cccatgaaga
     4621 gttccaggcc gtgatcaagg ccgttggcga actggctgcc gaaaccggca agccgcgctg
     4681 gaactggacc gccccggccg agaacaccgc tctgctcagc gccatcaagg ccgagttcgg
     4741 cgaagccatc tcccaggcct acaccatcac catcaagcag gaccgctaca accgtctgga
     4801 cgagctgcgc gaccaggtcg tcgccaagtt ctccggcgaa gaaggccagc cgtcctccgg
     4861 tgaagtcaaa gacgctttcg gtctgatcga ataccgcacc gttcgccaga acatcgttga
     4921 tggcaagccg cgtatcgacg gtcgtgacac ccgcaccgtg cgtggtctga acatcgaagt
     4981 cggcgtccta gacaagaccc acggttcggc cctgttcacc cgtggtgaga cccaggccct
     5041 ggtcgttgcc accctcggta ccgctcgcga tgcccagctg ctggacaccc tggaaggtga
     5101 gaagcgcgac cccttcatgc tgcactacaa cttcccaccg tactcggtcg gcgaatgtgg
     5161 ccgcatgggt gccaccggcc gccgcgaaat cggccacggt cgcctggccc gtcgtggcgt
     5221 tgccgccatg ctgccgagca atgacgagtt cccgtacacc atccgtatcg tctcggagat
     5281 caccgagtcc aacggttcgt cctccatggc ttccgtgtgc ggcgcttccc tggcgctgat
     5341 ggacgcgggt gtgcccatga aggcgccggt ggccggtatc gccatgggtc tggtcaagga
     5401 aggtgacaag ttcgccgtac tgaccgacat cctgggtgac gaagaccacc tgggcgacat
     5461 ggacttcaag gtcgccggta cctccaaggg cgttaccgcc ctgcagatgg acatcaagat
     5521 ccagggcatc accgaggaga tcatggagat cgccctgggt caggctctgg aagcccgtct
     5581 gaacatcctt ggccagatga atcaggtcat ctcccaatcg cgcagcgagc tgtcggccaa
     5641 cgctccgacc atgctggcga tgaagatcga ccaggacaag attcgcgacg tcatcggcaa
     5701 gggtggcgcc accatccgcg gcatctgcga agaaaccaag gcctcgatcg acatcgagga
     5761 cgacggctcg atcaagatct tcggcgagac caaggaagcc gccgaggctg ccaagcagcg
     5821 cgtgctggcg atcaccgccg aggccgagat cggcaagatc tacgtcggca aggttgagcg
     5881 catcgtcgac ttcggcgcct tcgtcaacat cctgccaggc aaggacggtc tggtgcacat
     5941 ctcgatgctg agcgatcagc gcgtcgagaa ggtcaccgac gtactgaagg aaggccagga
     6001 ggtcgaagta ctggtgctgg acgtggacaa ccgcggccgc atcaagctgt cgatcaagga
     6061 cgtcgccgct gccaaggctt cgggcgtcta agtcctagcc gcgcagcatg agaggagggc
     6121 cccacggggc cctctttttt tgcccgcgtt ttgccccgac aatggcgcct ttccgcagtg
     6181 cccaaacaag gacgtctggc gatggaaatc acccactgtc gttaccaccc cgcgcaaccc
     6241 gccacctggc actgcgcgcc ctgcgagcgt gactacggcg actgctgcgt cccgctcaac
     6301 gccgacgcgc cggagctgga accgacctgc ccactgtgcg ccggcaagct gcgctttctc
     6361 ggtgcggcca atactgcgca gccgttctgg cagcgcatcc ccaccttctt tcgctacggc
     6421 ctgcagccgg gaccgctggc cttcgccgcg gcgctgtgcc tggccagcct gttcatgccg
     6481 gcctggaaac tgctgtggct ggcgctgttc
//
LOCUS       DATIHC010000759         3691 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_32615, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000759 DATIHC010000000
VERSION     DATIHC010000759.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3691)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3691)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3691
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32615"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1434)
                     /locus_tag="VLF16_12595"
     CDS             complement(<1..1434)
                     /locus_tag="VLF16_12595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003099544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HSX71759.1"
                     /translation="MIRVLCGLLLLLPLLARADDLSAEQRAWLAEHPQLRVGVVLQAP
                     YAEFQRRQQRLSGLSVELTDLVAEALGITLSWRSFETQAALEQALREGRIDFAPGQSQ
                     TPAGLRLWRYSDPYLRVPHLLVGERAGEVGIELEHLGQDDPVAVRVPSAVADYLSGNY
                     FNLRLLPQPSARQALQAVVEQRARYAVVDQAQLSRLSQESEFAGLAVIADVGLPQLLR
                     FGTRSDWLELATLLDAGLRELPAERLEQLQQRWLTAHKPGLGESPVFWRNLSILLGLL
                     LSISLLLLTVLRRQRGRLERRLLDARQVLTQREVAEEALRLAQFSLDHSTVGILWVNW
                     DSRVRYANQAVAEMLGYDSHAMVDRPLQDFEPNLGMDRWLGLWKRVRQHEEGALSFES
                     NCLRADGSWMPADVTLGFLRFREAEYLVVYLTDVTERRRAHAALEESEARLKGIAGNV
                     PGLVFRLERPLPGAPVDFAFISEGSEQL"
     gene            1539..2507
                     /locus_tag="VLF16_12600"
     CDS             1539..2507
                     /locus_tag="VLF16_12600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003450729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase family protein"
                     /protein_id="HSX71760.1"
                     /translation="MRRPVLSTLLALCLTLALPLHAEDEAPAAATDDAAQTPPRQPLE
                     ERTHDSAEGLERQLPKREQQMLQAGEETFLALWKPANAPEAKGLVILVPGADESADWP
                     QAIKPLRLKLPDVGWATLSLTLPDSKAAPLPEAVLPREPEPVGVDTAAAPAEGEAPDP
                     ASEGATTGAPGETPPLATPAPAPVDPAERIFARVQAGIAFAEQQDIQKLVLLGHGEGA
                     YWAALYLKERKPEAIRQLVVVAPLLPTGQTPPLDELIPGLEMATGDFFYKDQVADRSS
                     AVRRKQASKRLDHDGYTQIALKALPGNLAAEQEQLFRRVRGWLDKQ"
     gene            complement(2522..3295)
                     /gene="djlA"
                     /locus_tag="VLF16_12605"
     CDS             complement(2522..3295)
                     /gene="djlA"
                     /locus_tag="VLF16_12605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010206963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone DjlA"
                     /protein_id="HSX71761.1"
                     /translation="MLWPATLIGAAAGLAIASIPGALLGGLLGQVLDRRLRLQSLDHL
                     RELLGGKRVELDDEDLLFMLIGRLAKSDGRVLDSHIQTARNEMQRLGLDEPARQRAMQ
                     AFNRGKQAADKELRGPLRALHQRPERAEALLRTCWRMAWADGRVSAAEAKLMQQWGLW
                     LGWTRDALAELAREYEPARKVPQVKSSDYQAALRLLGVQADTEPAVIKRAYRRLISRH
                     HPDKLAGSGASPAQLRAATDKTRELQVAYELVRQRRGFR"
     gene            complement(3297..>3691)
                     /locus_tag="VLF16_12610"
     CDS             complement(3297..>3691)
                     /locus_tag="VLF16_12610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="mannose-1-phosphate guanylyltransferase"
                     /protein_id="HSX71762.1"
                     /translation="PLLGDEPFLVVNGDIWTDYDFAALRRPLSGLAHLVLVDNPAHHQ
                     AGDFRLVEGQVSDAVAGEPSLTYSGIAVLHPRLFAGCQAGAFKLAPLLRAAMAEGQVS
                     GERSAGRWIDVGTHERLAEVERLLQVEA"
BASE COUNT          601 a         1342 c         1255 g          493 t
ORIGIN      
        1 cagctgttcg ctgccctcgc tgataaaggc gaagtccacc ggcgcaccgg gcagcgggcg
       61 ctccaggcgg aacaccaggc ccggcacgtt gccggcaatg cccttgagcc gcgcctcgct
      121 ctcctccagg gcggcgtggg cgcggcggcg ctcggtgacg tcggtgaggt agaccaccag
      181 gtactcggcc tcgcgaaaac gcaggaagcc cagggtcaca tccgccggca tccagctgcc
      241 atcggcgcgc aggcagttgc tctcgaaact cagcgcgccc tcctcgtgct ggcgtacgcg
      301 cttccacagg ccaagccagc ggtccatgcc caggttcggc tcgaaatcct gcagcggccg
      361 gtcgaccatg gcgtggctgt cgtagccgag catctcggcc accgcctggt tggcgtagcg
      421 cacccggctg tcccagttga cccagaggat gccgaccgtg ctgtggtcga gagagaactg
      481 cgccaggcgc agggcctcct cggccacctc gcgttgggtc agcacctgcc gcgcgtccag
      541 caggcgcctc tccaggcgtc cgcgctggcg gcgcagcacg gtcagtagca gcaggctgat
      601 gctcagcagc aggccgagca ggatgctcag gttgcgccag aacaccggcg actcgccgag
      661 ccccggtttg tgcgcggtga gccagcgctg ctgcagctgt tccaggcgct cggccggcaa
      721 ctcgcgcagg ccggcgtcga gcagcgtggc cagctcgagc cagtcgctgc gcgtaccgaa
      781 acgcagcagc tggggcaggc cgacatcggc gatcaccgcc aggccggcga actcgctctc
      841 ctggctcagg cggctgagct gggcctgatc gaccacggca taacgcgcgc gctgttcgac
      901 gaccgcctgc agcgcctggc gagccgaggg ctgcggcagc aggcgcaggt tgaagtagtt
      961 gccactcagg taatcggcca cggcgctggg cacacgcacg gcgaccggat cgtcctgacc
     1021 gaggtgctcc agttcgatgc cgacttcgcc ggcccgctcg ccgacgagca gatgcggcac
     1081 gcgcagatag gggtcgctgt agcgccacag gcgcaggccg gcgggcgtct ggctctggcc
     1141 tggcgcgaaa tcgatgcgcc cctcgcgcag ggcttgctcg agcgcggcct gggtctcgaa
     1201 actgcgccag ctgagggtga tgcccagggc ctcggccacc agatcggtca gctcgacgct
     1261 caggccgctg aggcgttgct gacggcgctg gaattcggca tagggtgcct gcagcaccac
     1321 gccgacgcgc agctgcgggt gctcggccag ccaggcgcgc tgctcggcgc tcaggtcgtc
     1381 ggcgcgcgcc aataaaggaa gcagcaacag cagcccgcag agcactcgaa tcatgcgcac
     1441 ggcatcaatc cacatcatcc agcccggccc ctaccttacc tgacaaaccg ccacgaagcg
     1501 cttaggctgc gcaaaccacc cccatgcgaa gagctgagat gcgccgtccc gttctatcga
     1561 cactcctggc cctgtgcctg acgctcgccc tgcccctgca tgccgaggat gaggcgcccg
     1621 ccgccgccac cgacgacgcc gcgcaaacgc cgccgcgcca gccgctggaa gagcgtaccc
     1681 acgacagtgc cgaggggctg gaacgccaac tgcccaagcg cgaacaacag atgctgcagg
     1741 ccggcgagga aaccttcctg gcgctgtgga aaccggccaa cgcgccggag gccaagggcc
     1801 tggtgatcct agtgccgggc gccgacgaga gtgccgactg gccgcaggcg atcaagcccc
     1861 tgcgcctcaa gctgccggac gtgggctggg ccaccctgag cctgacactg ccggacagca
     1921 aggccgcgcc actgcccgag gccgtgctgc cacgcgagcc ggaaccggtc ggcgtcgata
     1981 ccgccgcggc accggccgaa ggcgaagcgc cggaccctgc cagcgaaggt gccaccaccg
     2041 gcgcgccggg cgaaaccccg ccgctggcca ctcccgcgcc cgctccggtc gatccggccg
     2101 aacgcatttt cgcgcgcgtc caggccggca tcgccttcgc cgagcaacag gacatccaga
     2161 agctggtgct gctcggccat ggcgagggcg cctactgggc cgcgctgtac ctgaaggaac
     2221 gcaagcccga ggcgatcagg caactggtgg tagtggcgcc gctattgccc accgggcaga
     2281 cgccgccact ggacgaactg attcccgggc tcgaaatggc caccggcgac ttcttctaca
     2341 aggaccaggt cgccgaccgc agcagcgcgg tacgccgcaa gcaggccagc aagcgcctgg
     2401 accacgacgg ctacacccag atcgcgctga aggcgttgcc gggcaacctg gcggccgagc
     2461 aggagcagct gtttcgccgc gtgcgcggct ggctggacaa gcagtaaagc gccggcggcg
     2521 actagcgaaa accgcggcgc tggcgcacca gctcgtaggc gacctgcagc tcgcgggtct
     2581 tgtccgtagc ggcgcgcaac tgcgccgggc tggcgccgga gcccgccagc ttgtccggat
     2641 gatggcgact gatcagccgg cgataggcgc gcttgatcac cgccggttcg gtatccgcct
     2701 gtacaccgag caaccgcagc gcggcctggt aatcgctgga cttcacctgc ggcaccttgc
     2761 gcgccggctc gtactcgcgg gccagttcgg ccaaggcgtc gcgcgtccag ccgagccaca
     2821 gcccccactg ctgcatcagc ttcgcctccg ccgcgctcac ccggccgtcc gcccaggcca
     2881 tgcgccaaca ggtgcgcagc agcgcctcgg ctcgctcggg gcgttggtgc agcgcgcgca
     2941 agggtccgcg cagctccttg tctgccgcct gcttgccgcg gttgaacgcc tgcatggcgc
     3001 gctggcgcgc cggctcgtcc agaccgaggc gctgcatctc gttgcgcgcg gtctggatat
     3061 ggctgtcgag cacgcgaccg tcgctcttgg ccaggcggcc gatcaacatg aacagcaagt
     3121 cttcgtcgtc cagctccacg cgcttgccgc cgagcagctc gcgcaggtga tccagcgatt
     3181 gcaggcgcag gcgccggtcg agcacctggc cgagcaggcc gccgagcagg gccccgggaa
     3241 tgctggcgat ggccagccct gccgccgcgc cgatcagggt cgccggccag agcatgtcag
     3301 gcctccacct gcaacaggcg ctcgacttcc gccaggcgct catgggtacc gacgtcgatc
     3361 cagcgaccgg cggagcgctc gccactcacc tggccttcgg ccatggccgc gcgcagcagc
     3421 ggcgccagct tgaaggcccc cgcctggcag ccggcgaaca ggcgcggatg cagcacggcg
     3481 atgccgctgt aggtgagcga cggctcgccg gccacggcat cgctcacctg cccttcaacc
     3541 aggcggaagt cgccggcctg gtggtgggcc gggttgtcca ccagcaccag gtgcgccagg
     3601 ccggacagcg gccggcgcag ggcggcgaag tcgtagtcgg tccagatatc gccgttgacc
     3661 accaggaacg gctcgtcacc gagcagcggc a
//
LOCUS       DATIHC010000760         2480 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13683, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000760 DATIHC010000000
VERSION     DATIHC010000760.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2480)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2480)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2480
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13683"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            169..624
                     /locus_tag="VLF16_12615"
     CDS             169..624
                     /locus_tag="VLF16_12615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71763.1"
                     /translation="MTTINTQSPLASYLASAGKATPAASGSSQEKPAESTKDPIAELR
                     ILARQMIARSEGGLLRALNGGGQVSLASQHTAPSEESHSASGKIALPDVSRLDRDEAA
                     RLLPQVEKLLDSGLAESTRFSGSNGDKQTDSLATYRDWLQEKGGISIYV"
     gene            complement(735..1559)
                     /locus_tag="VLF16_12620"
     CDS             complement(735..1559)
                     /locus_tag="VLF16_12620"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020299757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSX71764.1"
                     /translation="MDESFELNRANWDDRADLHAASPDYQTEIFVADPGHLSAVVRFD
                     QPRLGDIAGLRAVHLQCHIGTDTLSLARLGARMTGLDFSGASLAQARRLAQRCDVAIE
                     YVESPVYDAAEALAPGGFDLVYTGIGALNWLPRIDDWARNVAALLKPGGRLFLREGHP
                     LLFALDEERRDELVIRHPYFEHAQPMVWDDDSTYVQTERALTATVTHEWNHGLGEIVS
                     ALLRHGMEITALEEHDCIPWEALPGQMEMGDDEEWRLRSGRERVPLSYTLQARKPV"
     gene            1677..>2480
                     /locus_tag="VLF16_12625"
     CDS             1677..>2480
                     /locus_tag="VLF16_12625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008081298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HSX71765.1"
                     /translation="MQSTPTLLRSVLLALGLFATTAQAADEAELIESINAYRSQVQRC
                     AEQASPELPPLTADIRLVLPASGSADLQDSLARAGYPMVNVQAISLSGPRDATAAMQA
                     LQESFCQVLLDPQFVDVGVSRADRDWRIVLARPLLGGRLGDWQAEGNKLMQEINVARG
                     QARQCGDKAFAAAAPLAWNATLAGTSEAHSRAMANGNFFDHRDRDGRTPGDRAELAGY
                     AGLNIGENIAAGLDTAQKVVAGWLASPGHCANLMGPQFSELGAAYAVDPK"
BASE COUNT          401 a          892 c          839 g          348 t
ORIGIN      
        1 ggcccgtttc gcgcctcgct tcggcggcaa ggccttgccc cggccggcaa ggtctttcct
       61 gcccggaccc tcgaggaaat agcctgaccc cgccaaccac gggcctttcg gcggtctggc
      121 ccgcattctg caaacgaacg ggggcaacgg actcagcagg gaaccgccat gaccaccatc
      181 aacacccaat cgccgctggc cagctatctc gccagcgccg gaaaggccac cccggccgcc
      241 tcgggcagca gtcaggaaaa gcccgccgag agcaccaagg accccatcgc cgagctgcgc
      301 atcctggccc ggcagatgat cgcccgcagc gagggtggcc tgctgcgcgc cctcaacggc
      361 ggcggccagg tatcgctggc cagccagcac accgcgccga gcgaagagag ccacagcgcc
      421 agcggcaaga tcgcgctgcc ggacgtctcc cgcctggatc gcgacgaagc ggcccgccta
      481 ctgccgcagg tggagaagct gctggactcg ggcctggccg agagcacccg tttctccggc
      541 agcaacggcg acaagcagac cgactcgctg gccacctacc gcgactggct gcaggagaag
      601 ggcggcatca gcatctacgt ctgagaagct gttcgggctc tcctgactgt cagccagacc
      661 gcgttaaaag cggcgtcggc tgcgcatttg ccgttcgtag actgcgcggc ctgtctggcc
      721 tgattcaggg ggcctcaaac gggtttcctc gcctgcagcg tatagctcag cggcacccgc
      781 tcgcgcccgc tgcgcaggcg ccactcctca tcgtcgccca tctccatctg gccgggcagg
      841 gcctcccagg gaatgcagtc gtgctcttct agcgcggtga tctccatccc atggcgcagc
      901 agggcggaga cgatctcgcc gagcccgtga ttccactcgt gggtgacggt ggccgtcagc
      961 gcccgttcgg tctgcacgta ggtgctgtcg tcgtcccaga ccatcggttg cgcgtgctcg
     1021 aagtaggggt ggcggatcac cagctcatcg cggcgctcct cgtccagggc gaacagcaac
     1081 ggatggccct cgcgcaggaa caggcgcccg cccggcttga gcagggcggc gacgttgcgc
     1141 gcccagtcgt cgatgcgtgg cagccagttc agcgcgccga tgccggtgta gaccaggtcg
     1201 aacccgcccg gcgcgagcgc ctcggcggcg tcgtagaccg gcgactccac gtactcgatg
     1261 gccacgtcgc agcgctgcgc cagccggcgc gcctgggcca gcgaggcgcc ggagaagtcc
     1321 aggccggtca tccgcgcccc caggcgcgcc agcgacagcg tgtcggtgcc gatatggcac
     1381 tgcaggtgca cggcgcgcag tccggcgatg tcgcccaggc gcggttggtc gaagcgcacc
     1441 acggcggaga ggtgaccggg gtcggcgacg aagatctcgg tctggtagtc cggcgaggcg
     1501 gcgtgaagat cggcgcggtc gtcccagttg gccctgttca gctcgaagga ttcatccatg
     1561 gcggcactcc attgcgggaa cgagacggta gccttacggg tcttcagccg gcaagcccgc
     1621 atttcctgcc gccgccagac gcggcatgat gggccaaaag aaccaggggg actccaatgc
     1681 aatcgacgcc gaccttactg cgctccgttc ttctcgcgct cggcctgttc gccaccaccg
     1741 cgcaggccgc cgacgaagcc gagctgatcg agtcgatcaa cgcctatcgc agccaggtgc
     1801 agcggtgcgc ggaacaggcc tcgcccgaat tgccgccgct gaccgccgac atccgcctgg
     1861 tgctgccggc cagcggcagc gccgacctgc aggattccct ggcgcgcgcc ggctacccca
     1921 tggtcaacgt gcaggcgatc agcctgtccg gcccgcgtga cgcgacggcg gccatgcagg
     1981 cgctgcagga gagtttctgc caggtgctgc tggacccgca gttcgtcgat gtcggcgtga
     2041 gccgcgccga tcgcgactgg cgcatcgtgc tggcgcggcc gctgctcggt gggcgcctgg
     2101 gtgactggca ggccgagggc aacaagctga tgcaggagat caacgtggcc cgcggccagg
     2161 cccgccagtg cggcgacaag gccttcgccg ccgccgcgcc gctggcctgg aacgccaccc
     2221 tggccggcac gtccgaggcg cacagccgcg ccatggccaa cggcaacttc ttcgatcacc
     2281 gcgaccgcga cggccgcacg ccgggcgacc gcgccgaact ggccggctac gcgggcctga
     2341 acatcggcga gaacatcgcc gccggcctgg acaccgcgca gaaggtggtc gccggctggc
     2401 tggccagccc cggccactgc gccaacctga tgggcccgca attcagcgaa ctgggcgccg
     2461 cctacgcggt ggacccgaag
//
LOCUS       DATIHC010000761         1706 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13688, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000761 DATIHC010000000
VERSION     DATIHC010000761.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1706)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1706)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1706
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13688"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..806
                     /locus_tag="VLF16_12630"
     CDS             <1..806
                     /locus_tag="VLF16_12630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010485201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSX71766.1"
                     /translation="GILLGCVGLGAIGGAVLLPRLRARFGGDVLVMAASLAYAGVLFG
                     LAWLREFAWLAPLMLLSGAAWIAVLSSLQLAAQTAVPAWVRARALSVYILVFFGASAL
                     GGIAWGALASHFSLGVAFAGGGALLVLGLVMRLWFALPATRAEDVAPALHWPTPILDE
                     ALDRERGPVLVTLEYRITAEDAAAFRLAMEDVRRMRRRNGAFSWALLQDSEDPGLWQE
                     LFFDESWLEHLRHHGRVTQAEQRIEAAARRYQQEGVPLRIRHLLAAPRH"
     gene            836..1459
                     /gene="ycaC"
                     /locus_tag="VLF16_12635"
     CDS             836..1459
                     /gene="ycaC"
                     /locus_tag="VLF16_12635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate family cysteine hydrolase YcaC"
                     /protein_id="HSX71767.1"
                     /translation="MSVPYKRLNKDDAVVLLVDHQSGLISLVQDFTPSDFKNNVLALG
                     AVAKFFNLPTILTTSFEQGPNGPLVPELKELFPEAPYVARPGQINAWDNEDFVAAIKK
                     TGRKQLIIAGVVTDVCVAFPALSAIAEGFDVFVVTDASGTFDKTVQQAAWSRMSAAGV
                     QLMNWFSVACELHRDWRNDIEGLGNLLSNHIPNYRNLMTSYFTLIGK"
     gene            complement(1499..>1706)
                     /locus_tag="VLF16_12640"
     CDS             complement(1499..>1706)
                     /locus_tag="VLF16_12640"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HSX71768.1"
                     /translation="GSTGLSPHQWLTHQRLQRAEELLLGTRSVAEVAQDCGFADQAHF
                     SRVFARRFGQPPSQWRLERLRRAG"
BASE COUNT          231 a          623 c          587 g          265 t
ORIGIN      
        1 acggcatcct gctcggctgc gtcggtctcg gcgccatcgg cggggccgta ctgctgccac
       61 gcctgcgcgc gcgcttcggc ggcgacgtgc tggtgatggc cgcgagtctg gcctatgccg
      121 gcgtgctgtt cggcctggcg tggctgcgcg aattcgcctg gctggcgccg ctgatgctgc
      181 tcagcggcgc ggcctggatc gccgtgctgt cgagcctgca gctggcggcg cagacggcgg
      241 tgccggcgtg ggtccgcgcc cgtgcgctgt cggtgtacat cctggtgttc ttcggcgcct
      301 cggccctggg cggcatcgcc tggggcgcgc tggccagcca cttctcgctg ggcgtggcgt
      361 tcgccggcgg cggcgcgctg ctggtgctgg gcctggtcat gcgcctgtgg ttcgccctgc
      421 cggcgacccg cgccgaagac gtggcgcccg cgctgcactg gccgacgccg attctcgacg
      481 aggccctgga ccgcgagcgc ggcccggtgc tggtgaccct ggaataccgc atcaccgccg
      541 aggacgccgc ggcgttccgc ctggccatgg aagacgtgcg ccgcatgcgc cggcgcaacg
      601 gcgccttctc ctgggcgctg ctgcaggaca gcgaggaccc gggcctgtgg caggagctgt
      661 tcttcgacga atcctggctc gaacacctgc gccaccacgg ccgcgtcacc caggccgagc
      721 aacgcatcga ggccgccgcg cggcgttacc agcaggaggg cgtgccgctg cgcattcgcc
      781 acctgctggc cgccccgcgc cactgatttc aaccaccgca agaaggagcg tcatcatgtc
      841 cgtcccctac aagcgcctga acaaggacga cgccgtcgtc ctgttggtcg accaccagtc
      901 cggcctgatc tccctggtgc aggatttcac ccccagcgac ttcaagaaca acgtcctggc
      961 cctgggcgcc gtggccaagt tcttcaacct gccgaccatc ctcaccacca gcttcgagca
     1021 gggccccaac ggcccgctgg tgccggagct caaggaactg ttcccggagg cgccctacgt
     1081 cgcccgcccg ggccagatca acgcctggga caacgaggac ttcgtcgccg cgatcaagaa
     1141 gaccgggcgc aagcagctga tcatcgccgg tgtggtcacc gatgtgtgcg tggccttccc
     1201 ggcgctgtcg gcgatcgccg agggcttcga cgtgttcgtc gtcaccgacg cttccggcac
     1261 cttcgacaag accgtgcagc aggccgcctg gtcgcgcatg agcgccgccg gcgtgcagct
     1321 gatgaactgg ttcagcgtgg cgtgcgagct gcaccgcgac tggcgcaacg acatcgaggg
     1381 cctgggcaac ctgctgtcca accacatccc caactaccgc aacctgatga ccagctactt
     1441 caccctgatc ggcaagtgag gcgcgggcac gcggcgggct ccgtgcccgg ccgcgtgctc
     1501 agcccgcccg gcgcagccgc tcgaggcgcc actggctcgg cggctggccg aagcggcggg
     1561 cgaacacccg cgagaagtgc gcctggtcgg cgaagccgca gtcctgggcc acctccgcca
     1621 ccgaacgcgt gcccaggagc agttcctcgg cgcgctgcag gcgctggtgc gtcagccact
     1681 ggtgcggcga caggccggtg ctgccg
//
LOCUS       DATIHC010000762         8207 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_26792, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000762 DATIHC010000000
VERSION     DATIHC010000762.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 8207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8207
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26792"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..891
                     /locus_tag="VLF16_12645"
     CDS             <1..891
                     /locus_tag="VLF16_12645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003240342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HSX71769.1"
                     /translation="GWFSYRWTQIFETGQIPAASTVLKARPIAEGSQAAYAPAPLDEV
                     LATIAAEKPQVVFAPHVETSSGMILPDDYLRAVADAVHAVGGLFVLDCIASGTLWVDM
                     QACGVDVLISAPQKGWSASPCCALVMLSEAAQARVEATQSSSFACDLKKWLQIMQAYE
                     QGGHAYHATMPSDALARFRDAMKEAEANGFAKVCEQQRELGRRVRALLAGRGFKSVAA
                     EGFEAPGVVVCYTDDAQIKNGSKFAAQGLQIAAGVPLQCDEPADFQTFRLGLFGLDKL
                     GNVERTVATLEQALDKVLAG"
     gene            complement(964..1416)
                     /locus_tag="VLF16_12650"
     CDS             complement(964..1416)
                     /locus_tag="VLF16_12650"
                     /inference="COORDINATES: protein motif:HMM:NF017007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NINE protein"
                     /protein_id="HSX71770.1"
                     /translation="MPSQFADAKQVYCRYCGMTIGHLENLCPACNAEQNLKPRSQLVA
                     GLLALFLGGLGVHRFYLGQWWGIFYFLLCWSGVPMLIALVEAIAFLTADKQHWKSRYG
                     HTDGSSWFIAIVSLGLLFIFIVLIAAALIGDTPAIPTDFSELLLERPD"
     gene            complement(1470..2387)
                     /locus_tag="VLF16_12655"
     CDS             complement(1470..2387)
                     /locus_tag="VLF16_12655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017675450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase"
                     /protein_id="HSX71771.1"
                     /translation="MMLPLVYHDDYSPPFPANHRFPMEKFRLLRDHLVNSGLARDEEL
                     HRPEICPPDILALAHCPDYIERFASGELTYQEQRRLGLPWSEALARRTVRAVGGSLLA
                     AELALQYGIACHLAGGTHHAHFDEASGFCIFNDLAVMARYLLESGLVGRVLIYDCDVH
                     QGDGTARLLEHVPDAITVSLHCEKNFPTRKARSDWDIGLPIGMGDADYLKVVHDSLGY
                     LLALYQPDIVLYDGGVDVHKDDRLGYLQLTDAGIAARDEAVFNHCLERDIPVVGVIGG
                     GYDQDRALLARRHGILHHSAARVLQALRG"
     gene            2429..2983
                     /locus_tag="VLF16_12660"
     CDS             2429..2983
                     /locus_tag="VLF16_12660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSX71772.1"
                     /translation="MTTTLTSERLILRPWRDDDLDALAQLCADPGVMAHFPAVLDRAG
                     SVRLLDRLTAHQAEHGFTFWALERREDGVFIGFTGLARVGFDAPFVPAVETGWRLARP
                     YWGQGYALEAARCSLRFAFEGLQLHEVVAFTTPANQRSWGVMERLGMRRDPADDFEHP
                     GLPPGHPLSPHLLYRIKREDWHGR"
     gene            2973..4580
                     /locus_tag="VLF16_12665"
     CDS             2973..4580
                     /locus_tag="VLF16_12665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SagB/ThcOx family dehydrogenase"
                     /protein_id="HSX71773.1"
                     /translation="MDAEQQVRAYHALSKHAPNAYAPGPGQLDWATQPAPFRRYAGAR
                     LIELWQRPQEETPGYDTPFAGPLEPAQPLNRTSISQLLYDSLALSAWKEADGNRWALR
                     VNPSSGNLHPTEAYLLLPPGSIEETGLLAHYAPDAHGLEVRAELPVPLSEQLLAALPA
                     GGLLLGLASIPWREAWKYGERAYRYCQHDLGHALACLSIAAAIQGWQVRLLRSVAEGR
                     LDSLLGLDRDGFHEAEHGDCLLWIGPEQTTEFALPETLLRGLAALELSGAPNRLSRRY
                     REWPELARVHALCRAPALPLQNWSVQKGQVETDNPGLPLRPILHRRRSAQAFDGRSGI
                     QAELLFAWLRRLLPEHSPVPFALTGEPAQVDLLLFVHRVQGLEPGLYWLARCDGQPQP
                     EGLRGDFAWQRVHEELPLYRLLEGDARGLAGFLSCGQDIASDGCVAVAMLARFDAALA
                     AGAWHYPRLYWECGQIGQLLYLEAEAAGLSGTGIGCFFDDQVHELLELADSRWQSLYH
                     FTIGRAVWDERLTSAPAYNELRVPPEE"
     gene            4584..5453
                     /gene="tesB"
                     /locus_tag="VLF16_12670"
     CDS             4584..5453
                     /gene="tesB"
                     /locus_tag="VLF16_12670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004424620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA];
                     GO_process: GO:0006637 - acyl-CoA metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase II"
                     /protein_id="HSX71774.1"
                     /translation="MSQVLDDLVSLLSMEQIEENLFRGRSQDLGFRQLFGGQVLGQCV
                     SAANQTVDPARHVHSLHGYFLRPGDATLPIVYHVDRVRDGGSFSTRRVTAVQKGQPIF
                     FCSASFQADEEGFHHQLPMPEVPGPEGLPSETDIASKVAHLIPERMRDRMLSAKPIEI
                     RPVAMINPFAPEPAEPVKYIWFRAAGPLPDEPQLHKLLLAYASDFNLLTTSMLPHGVS
                     VFQKFMQVASLDHSLWFHADLRMDDWLLYAMDSPWAGNARGFSRASIFNRAGQLVASA
                     TQEGLIRQREDWK"
     gene            5444..6064
                     /locus_tag="VLF16_12675"
     CDS             5444..6064
                     /locus_tag="VLF16_12675"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HSX71775.1"
                     /translation="MEVSLAACRHWVFDMDGTLTVAVHDFPAIKRALGIPQDDDILHH
                     LAALPADEAAAKHAWLLEHERELAVGSVAAPGAVALVRALHERGCRLGILTRNAHELA
                     LLTLAAIGLGDCFATDDVLGRGEATPKPHPDGLLQLAARWDVAPSALLMVGDYRFDLD
                     CARAAGAHGVLVNLPDNPWPELADLHAPDCAALLAALTPLGVEEER"
     gene            complement(6072..6941)
                     /locus_tag="VLF16_12680"
     CDS             complement(6072..6941)
                     /locus_tag="VLF16_12680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HSX71776.1"
                     /translation="MRWERGRRSDNVVDARGRGGMRLGGGRGLGLGGIAVVVVIGLLM
                     GQDPLTILGNVLNQGVQQGAPVQEQQTPAANDPQSEFVRAVLGDTEDTWRALFQAAGK
                     QYQDPKLILFSGGVNSACGFADAAVGPFYCPGDRQVYLDLSFFREMETHFSAAGDFAQ
                     AYVIAHEVGHHVQTLLGVSAKVNAARQRGERVEGDNGLLVRQELQADCLAGVWAHHAQ
                     QRLNWLEPGDLEEALNAANAIGDDRLQKQSRGTVMPDSFTHGTSAQRVRWFKAGFDSG
                     QPGRCDTFQAKAL"
     gene            complement(7010..7441)
                     /locus_tag="VLF16_12685"
     CDS             complement(7010..7441)
                     /locus_tag="VLF16_12685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019339939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HSX71777.1"
                     /translation="MRLLPLAALLFASAAQAAEPVTMDVHRDANCGCCKAWISHLEES
                     GIKVNDHVETDMSAVKQRLGVPPRLASCHTGVIDGKFVEGHVPARDILALQGRPDLLG
                     AAVPGMPHGSPGMETGMQHAYQVIGLDKHGQESVLADYPAE"
     gene            7568..7957
                     /locus_tag="VLF16_12690"
     CDS             7568..7957
                     /locus_tag="VLF16_12690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004420241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4345 family protein"
                     /protein_id="HSX71778.1"
                     /translation="MLPVRLFLIVQILLLAGFGLAYFVRPQETANLSGMLLMTPAAVT
                     DVRAYYGGLQLALAVWLLLALLRLDLLRPALMLLVLLYATLCVARLSGLWLDGGAQQT
                     FNLYALLFEGVSAALAFWLLRRASASA"
     gene            complement(7943..>8207)
                     /locus_tag="VLF16_12695"
     CDS             complement(7943..>8207)
                     /locus_tag="VLF16_12695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TetR family transcriptional regulator C-terminal
                     domain-containing protein"
                     /protein_id="HSX71779.1"
                     /translation="DLRHKMQALHVECDERIEKSLRNAVSKGQLPADLDCRRATLCLH
                     GYIHGLQANWLLAPGGDSLAAQAEQFVDALLDMLRCSHALRRR"
BASE COUNT         1207 a         2740 c         2869 g         1391 t
ORIGIN      
        1 ggctggttca gctaccgctg gactcagatc ttcgagacgg gccagattcc cgccgcctcc
       61 accgtgctga aggcacgtcc gattgccgaa ggtagccagg ccgcctatgc accggctccg
      121 ctcgacgagg tgctggcgac catcgcggcg gagaagccgc aggtggtgtt cgcgccgcat
      181 gtggagacct cctcggggat gatcctgccc gacgactacc tgcgcgccgt ggccgatgcc
      241 gtgcacgcgg tgggcggcct gttcgtgctc gactgcatcg cctccggcac cctctgggtg
      301 gacatgcagg cgtgcggcgt cgacgtgctg atcagcgcac cgcagaaggg ctggagcgcc
      361 tcgccgtgct gcgccctggt gatgctcagc gaagccgccc aggcccgcgt cgaggcgacc
      421 cagagcagca gcttcgcctg cgacctgaag aaatggctgc agatcatgca ggcctacgaa
      481 cagggcggcc acgcctacca cgcgaccatg cccagcgacg ccctggcgcg cttccgcgat
      541 gcgatgaaag aggccgaggc caacggcttc gccaaggtct gcgaacagca gcgcgagctg
      601 ggccgccgcg tgcgcgcgct attggccggc aggggcttca agagcgtagc cgccgagggc
      661 ttcgaggcgc ccggcgtagt ggtctgctac accgacgatg cgcagatcaa gaacggcagc
      721 aagttcgccg cccagggcct gcagatcgcc gccggcgtgc cgctgcaatg cgacgagccg
      781 gcggacttcc agaccttccg cctcggcctg ttcggcctgg acaagctggg caatgtcgag
      841 cgcaccgtgg ccactctcga gcaggcgctg gataaagttc tagctggcta acccaggccc
      901 gccgcgcgcc tcacctgcga ggcgctgtgt gggcacgtcg cgctcaggac tgcgcacagg
      961 ctttcagtcc ggccgctcca gcaggagttc gctgaaatct gtggggattg ctggcgtgtc
     1021 cccgatcagc gcggcggcga tcaacacgat gaatatgaac agcagtccga ggctgacgat
     1081 ggcgataaac cagctgctgc catcggtgtg gccgtagcgg gatttccagt gctgcttgtc
     1141 ggccgtcagg aaggcgatcg cttccacaag ggcgatcagc atgggcacgc cgctccagca
     1201 cagcagaaag tagaaaatcc cccaccactg gcccaggtag aaacggtgca cgcccaggcc
     1261 gccgagaaac agggcgagca ggcctgcgac caactggctg cgtggcttga gattctgctc
     1321 ggcgttgcag gctgggcaca ggttttccag gtgtccgatg gtcatgccgc aatagcggca
     1381 gtaaacctgt ttggcatcgg cgaactggct cggcataggc aacttcctgt cggtgaggcg
     1441 gcgatcctag caacgcgcta ttcgtgcggc tatccgcgca gcgcctggag cacccgcgcc
     1501 gcactgtgat ggaggatgcc gtggcggcgg gcgagcaggg cgcggtcctg gtcgtagccg
     1561 ccgccgatca ccccgaccac cgggatgtcg cgttccaggc agtgattgaa gaccgcctcg
     1621 tcacgggcgg caatgccggc gtcggtcagt tgcagatagc cgaggcggtc gtccttgtgc
     1681 acatccacgc cgccgtcgta gagcacgata tccggctggt acagggccag caggtagccc
     1741 aggctgtcgt gcaccacttt caggtagtcg gcgtcgccca tgccgatcgg caggccgatg
     1801 tcccagtcgc tcctggcctt gcgcgtcggg aaattcttct cgcagtgcag cgacacggtg
     1861 atggcgtcgg gcacgtgctc cagcaggcgc gcggtgccgt cgccctggtg cacgtcgcag
     1921 tcgtagatca gcacccggcc gacaaggccg ctctccagca ggtagcgggc catcaccgcc
     1981 aggtcgttga agatgcagaa gccggaggcc tcgtcgaagt gtgcatggtg agtgccgccg
     2041 gccaggtgac aggcgatgcc gtactggagc gccagttcgg ccgccagcag cgagccgccc
     2101 accgcgcgca cggtgcgccg ggccagcgct tcactccagg gcaggcccag gcggcgctgt
     2161 tcctggtagg tcagctcgcc gctggcgaag cgctcgatat agtccgggca atgggccagg
     2221 gcgaggatgt ccggtgggca gatctcggga cgatgcagct cttcgtcacg cgccaggccg
     2281 ctgttcacca ggtggtcgcg cagcaggcgg aatttctcca tggggaagcg gtggttggcc
     2341 gggaagggcg ggctgtagtc gtcgtgatag accagcggca gcataatgat gagctcacgc
     2401 aggcttttga aaaaatggcg gccagtatat gaccacaacg ctgaccagcg agcgcctgat
     2461 cctgcgaccc tggcgcgacg acgatcttga tgccctggcg cagctgtgtg ccgaccccgg
     2521 ggtgatggcc catttccccg ccgtgctgga ccgcgccggt agcgtacgcc tgctcgacag
     2581 gttgacggcg caccaggccg agcatggctt caccttctgg gcgctggagc ggcgcgagga
     2641 tggtgtcttt atcggcttca ccgggctggc gcgggttggc ttcgatgcgc ccttcgtgcc
     2701 ggcggtggag actggctggc gcttggcgcg gccctattgg gggcaaggtt atgcgctgga
     2761 ggcggcgcgg tgttcgctgc ggttcgcctt cgagggtttg cagctgcatg aagtggtggc
     2821 ctttaccacg ccggccaacc agcgctcctg gggcgtgatg gagcggctgg gcatgcgccg
     2881 cgatccggcc gacgacttcg agcatcccgg cctgccgcct ggccatccgc taagtccgca
     2941 tctgctctat cgcatcaagc gggaggactg gcatggacgc tgagcagcag gtacgtgcct
     3001 atcacgcact cagcaagcac gcgccgaatg cctatgcgcc gggccccggt cagctcgact
     3061 gggcgactca gccggcaccg ttccgccgct acgccggcgc tcgtctgatc gagctgtggc
     3121 agcgcccgca ggaggaaaca ccgggttacg acacgccctt cgccgggcca ctggagccgg
     3181 cacagccgct caatcgaacc agcatttcgc aactgctgta cgacagtctg gccctgtccg
     3241 cctggaagga ggccgacggc aatcgctggg cgctgcgggt caatccgtcg tccggcaatc
     3301 tgcacccgac cgaggcctat ctgctgctgc cgccgggcag catcgaggag acaggcctgc
     3361 tggcgcacta cgcgccggat gcgcacggcc tggaggtgcg tgccgagctg ccggtgccgt
     3421 tgagcgagca gttgctggcg gcattgccgg ccggcggcct cctgctcggg ctggccagca
     3481 tcccctggcg cgaggcctgg aagtacggcg agcgcgccta tcgctactgc cagcacgatc
     3541 tgggtcatgc gctggcctgc ctgagcatcg ccgccgcgat ccagggctgg caggtgcgcc
     3601 tgctgcgcag cgtcgccgag gggcggctgg atagcctgct ggggctggat cgcgacggct
     3661 tccacgaggc cgagcatggc gactgcctgc tgtggatcgg gccggagcag acgacggagt
     3721 tcgccctgcc cgaaacgctg ttgcgcggcc tggcggcgct ggagctgagc ggcgcgccca
     3781 atcgcctgtc gcgccggtac cgtgagtggc cggagctggc gcgggtgcat gcgctatgtc
     3841 gcgcgccggc attgccgttg caaaactgga gtgtgcagaa agggcaggtg gaaacagaca
     3901 accccggcct gccgctgcgg ccgatcctgc atcggcggcg cagcgcccag gcgttcgacg
     3961 gtcgcagcgg cattcaggcc gagctgctgt tcgcctggct gcgtcgtttg ctgccggaac
     4021 attcgccggt gccgtttgcg ctgaccggcg agccggcgca ggtcgacctg ctgctgttcg
     4081 tccatcgcgt gcagggcctg gaaccgggcc tgtactggct ggcccgttgc gatggtcagc
     4141 cccagccgga gggcctgcgc ggtgatttcg cctggcagcg cgtgcatgaa gagctgccgc
     4201 tgtaccgcct gctggaaggc gatgcccgtg gcctggccgg ctttctctcc tgcggccagg
     4261 acatcgccag cgacggctgc gtggccgtgg ccatgctggc gcgtttcgac gccgcgctgg
     4321 ccgctggcgc ctggcactac ccgcgtctgt actgggagtg cgggcagatc ggccagctgc
     4381 tgtatctcga ggccgaggcg gcgggcctgt ccggcaccgg tatcggctgc ttcttcgacg
     4441 atcaggtgca cgaattgctg gaactggccg acagccgctg gcaaagcctt taccatttca
     4501 ccatcggtcg cgcggtgtgg gatgaacgcc tcaccagcgc gccggcctat aacgaattgc
     4561 gtgtgccgcc cgaggagtga tgtatgagcc aagtgctgga tgatctggta tccctgctga
     4621 gcatggagca gatcgaggaa aacctgttcc gcgggcgcag ccaggacctc ggtttccgtc
     4681 agctgttcgg cggtcaggtg cttggccagt gcgtgtcggc ggccaaccag acggtcgatc
     4741 cggcgcgcca tgtgcattcg ctgcacggct actttctgcg ccccggcgac gccaccttgc
     4801 cgatcgtcta tcacgtcgac cgggtacgcg acggcggcag tttcagtacc cggcgggtca
     4861 cggcggtgca gaagggccag ccgatcttct tctgctcggc ctcgttccag gccgacgagg
     4921 agggcttcca ccaccagctg ccgatgcccg aggtgccggg ccccgagggc ctgccctcgg
     4981 aaaccgatat cgccagcaag gtggcgcacc tgattcccga gcgcatgcgc gatcgcatgc
     5041 tcagcgccaa gccgatcgag attcgcccgg tggcgatgat caacccgttc gcccccgagc
     5101 cggccgagcc ggtcaagtac atctggttcc gcgccgccgg cccgctgccg gacgagccgc
     5161 agctgcacaa gttgctgctg gcctacgcca gcgacttcaa cctgctgacc acctcgatgc
     5221 tgccccacgg ggtatcggtg ttccagaagt tcatgcaggt cgccagcctc gaccattccc
     5281 tgtggttcca cgccgacctg cgcatggacg actggctgct gtacgccatg gacagcccct
     5341 gggccggtaa tgcccgtggc ttctcccgcg ccagcatctt caaccgcgcc ggtcagctgg
     5401 tcgcctcggc gacgcaggag gggctgatcc gtcagcgcga ggactggaag tgagtctggc
     5461 cgcctgccgc cactgggtgt tcgacatgga cggcaccctg accgtggcgg tgcatgactt
     5521 cccggcgatc aagcgcgccc tgggcattcc ccaggacgac gacatcctcc atcacctggc
     5581 ggcgctgccc gccgacgagg ctgcggccaa gcatgcctgg ctgctggagc acgagcgtga
     5641 gctggccgtc ggctcggtgg ctgctcctgg tgcggtggcc ttggtgcggg cgctgcatga
     5701 gcgtggttgt cgcctcggca tccttacccg caacgcccat gagctggcgc tgctgaccct
     5761 ggccgccatc ggcctgggcg actgcttcgc cacggacgat gtgctcggtc gcggcgaggc
     5821 gacccccaag ccgcaccccg atggcctgct gcagctggcg gcacgctggg acgtggcgcc
     5881 gagcgcactg ctgatggtcg gcgactaccg cttcgacctc gactgcgccc gcgccgccgg
     5941 cgctcatggc gtgctggtca atctgccgga caacccctgg ccggagctgg ccgacctgca
     6001 cgcgccggac tgcgcggcgc tgctggcggc cctcacgcct ctgggcgtgg aagaggagcg
     6061 ctgaggcgcg gctacagcgc cttcgcctgg aaggtatcgc agcgccccgg ctgaccgctg
     6121 tcgaagccgg ccttgaacca gcgcacgcgc tgcgccgagg tgccatgggt gaaggagtcc
     6181 ggcatcacgg tgccgcgcga ctgcttttgc aggcgatcgt cgccgatggc attggcggcg
     6241 ttcagcgcct cctccagatc gcccggctcc agccagttca ggcgttgctg ggcgtggtgc
     6301 gcccagactc cggccaggca gtcggcctgc agttcctgac gcaccagcag accgttgtcg
     6361 ccctccaccc gctcgccgcg ctggcgcgcc gcgttgacct tggccgagac gccgagcagg
     6421 gtctgtacgt ggtggccgac ctcatgggcg atcacatagg cctgggcgaa gtcgccggcg
     6481 gcggagaagt gtgtctccat ctcgcggaag aacgagaggt cgagatagac ctggcgatca
     6541 ccggggcagt agaaggggcc gacggcggcg tcggcgaagc cgcaggccga attcacgccg
     6601 ccgctgaaga ggatgagttt cgggtcctgg tattgcttgc cggcggcctg gaagagggcg
     6661 cgccaggtgt cctcggtgtc gccgagcacg gcgcggacga attcgctctg cgggtcgttg
     6721 gccgccggcg tctgttgttc ctgcaccggc gcgccctgct gtacgccctg gttgagcacg
     6781 ttgccgagga tggtcagcgg gtcctggccc atcagcaggc cgatgaccac caccacggcg
     6841 atgccgccaa ggcccaggcc cctgccgccg ccgaggcgca tgccaccgcg gccgcgggcg
     6901 tccaccacgt tgtcgctgcg tctaccgcgt tcccagcgca tggccgcgct ccttcaatcg
     6961 tccggagctg acagtgtcgt cgccgggcgc gcggtgcgcc agcgcagcgt cactcggccg
     7021 gatagtcggc cagcacgctt tcctggccgt gcttgtccag gccgatcacc tggtaggcgt
     7081 gctgcatccc ggtctccatc cccggcgagc cgtgcggcat gcccggtacg gcggcaccga
     7141 gcaggtcggg gcggccctgc agggcgagga tgtcgcgggc cggcacgtgg ccctcgacga
     7201 acttgccgtc gatcacgccg gtgtggcacg aggccaggcg cggcggtacg ccgaggcgct
     7261 gcttgaccgc gctcatgtcg gtctcgacgt gatcgttgac cttgatgccg ctctcttcca
     7321 ggtggctgat ccaggccttg cagcagccgc agttggcgtc gcggtggacg tccatggtga
     7381 ccggctcggc ggcctgggcg gcgctggcga agaggagggc ggcgagaggc aggaggcgca
     7441 tggcgagttc ctcgggtgac gggattgcgg caggatactc ccggccgtgc gggcctcaca
     7501 ggccgtgact gtttccgtct gcgtccaggc ggcctatgct cgcccggtgc cgccaaggag
     7561 aaccgcgatg ctgcccgtgc gcctgttcct gatcgtccag atcctgctgc tggccggctt
     7621 cggcctggcc tatttcgttc gcccgcagga gaccgccaac ctcagcggca tgctgttgat
     7681 gacgcccgcc gccgtcaccg acgtgcgcgc ctactacggt ggcctgcagc tggcgttggc
     7741 ggtgtggctg ttgctggcgt tgctgcgcct ggacctgctg cgcccggcgc tgatgctgct
     7801 ggtgctgctc tacgccaccc tgtgcgtcgc ccgcctgagc gggctgtggc tggacggcgg
     7861 cgcgcagcag accttcaacc tctatgccct gctgttcgag ggtgtctccg ccgcgctggc
     7921 gttctggctg ctgcggcgcg cttcagcgtc ggcgtagggc gtggctgcag cgcagcatgt
     7981 cgagcagggc atcgacgaac tgctcggcct gcgccgccag cgagtcgccg cccggcgcca
     8041 atagccagtt ggcctgcagg ccgtggatat agccgtgcag gcagagcgtg gcgcggcggc
     8101 aatcgaggtc ggccggcagc tggcccttgc tgaccgcatt acgtaacgat ttctcgatac
     8161 gctcgtcgca ctccacatgc agcgcctgca tcttgtggcg caggtcg
//
LOCUS       DATIHC010000763         2428 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4435, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000763 DATIHC010000000
VERSION     DATIHC010000763.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2428)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2428
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4435"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..910)
                     /locus_tag="VLF16_12700"
     CDS             complement(<1..910)
                     /locus_tag="VLF16_12700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HSX71780.1"
                     /translation="MSAVIDSHKEHGHAGHDHHHGPAKGLMRWVLTTNHKDIGSMYLW
                     FSFAMFLLGGSMAMVIRAELFQPGLQIVEPAFFNQMTTMHGLIMVFGAVMPAFVGLAN
                     WMIPLMVGAPDMALPRMNNFSFWLLPAAFGLLVSTLFTEGGGPNFGWTFYAPLSTTYA
                     PESVTFFIFAIHLMGISSIMGAINVIATILNLRAPGMTLMKMPLFIWTWLITAFLLIA
                     VMPVLAGVVTMMLMDIHFGTSFFSAAGGGDPVLFQHVFWFFGHPEVYIMILPAFGAVS
                     SIIPAFARKPLFGYTSMVYATASIAFL"
     gene            complement(912..2039)
                     /gene="coxB"
                     /locus_tag="VLF16_12705"
     CDS             complement(912..2039)
                     /gene="coxB"
                     /locus_tag="VLF16_12705"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003253039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HSX71781.1"
                     /translation="MMRHPRVWMGLLLWLAFGSAHAEWAVNMLPGVTEVSRSVFDLHM
                     IIFWICVVIGVVVFGVMFWSMLIHRRSTGQQPAHFHESTTVEILWTVVPFVILVAMAV
                     PATKTLIDIYDTSESELDIQVTGYQWKWHYKYLGQDVEFFSNLATPTDQIYNKAEKNE
                     HYLLEVDEPLVVPVGTKVRFLITAADVIHSWWVPALAVKKDAIPGFVNESWTRIDEPG
                     IYRGQCTELCGKDHGFMPVVVEAKSKEDFAVWLAERKEQAAKLKELTSKEWTVEELVA
                     RGEKVYQTNCASCHQAEGQGMPPMFPALKGSKIAIGPTKDHLDIVYHGKQGTAMAAFG
                     KQLSEVDIAAVITYERNAWGNNTGDMVTPKEVLELKQVEEK"
BASE COUNT          467 a          759 c          745 g          457 t
ORIGIN      
        1 acaggaaggc gatcgaggcc gtggcataga ccatcgaggt gtagccgaac aatggcttgc
       61 gcgcgaaggc cgggatgatc gagctgacgg cgccgaacgc cggcaggatc atgatgtaca
      121 cctcggggtg gccgaagaac cagaacacgt gctggaacag caccgggtcg cctccgccgg
      181 ccgcgctgaa gaagctggtg ccgaagtgga tgtccatcag catcatggtc accaccccgg
      241 ccaataccgg catcaccgcg atcagcagga aggcagtgat cagccaggtc cagatgaaca
      301 gcggcatctt catcagggtc atgcccgggg cgcgcaggtt gaggatggtg gcgatcacat
      361 tgatcgcacc catgatcgag ctgatgccca tcaggtggat ggcgaagatg aagaaggtca
      421 ccgactccgg cgcgtaggtg gtcgacagcg gcgcatagaa ggtccaaccg aagttcggcc
      481 caccgccctc ggtgaacaac gtgctgacca gcaggccgaa ggccgccggc agcagccaga
      541 agctgaagtt gttcatccgc ggcagggcca tgtccggcgc gccgaccatc agcgggatca
      601 tccagttggc caggccgacg aaggccggca tcacggcacc gaacaccatg atcaggccgt
      661 gcatggtggt catctggttg aagaaggccg gctcgacgat ctgcaggccg ggctggaaca
      721 gctcggcgcg gatcaccatg gccatggacc cgccgagcag gaacatggcg aagctgaacc
      781 acaggtacat cgagccgatg tccttgtggt tggtggtcag cacccagcgc atcaggccct
      841 tggcggggcc gtggtggtgg tcatgcccgg catgaccatg ctctttgtga gagtcgatca
      901 cagcactcat gtcacttctc ctcgacctgc ttgagctcca gcacttcctt cggggtcacc
      961 atgtcaccgg tgttgttgcc ccaggcgttg cgctcgtaag tgatgacggc ggcgatatcc
     1021 acttccgaca gctgcttgcc gaacgcggcc atcgccgtgc cctgcttgcc gtggtagacg
     1081 atgtcgaggt gatccttggt cggcccgatg gcgatcttcg agcccttgag cgccgggaac
     1141 atcggcggca tgccctggcc ctcggcctgg tgacaggagg cgcagtttgt ctggtagacc
     1201 ttctcgccgc gcgcaaccag ctcctccacc gtccattcct tgctggtcag ctccttgagc
     1261 ttggccgcct gctccttgcg ctcggcgagc cacacggcga agtcttcctt gctcttggcc
     1321 tcgaccacca ccggcatgaa gccgtggtcc ttgccgcaca gctcggtgca ctggccgcgg
     1381 taaatgccgg gctcgtcgat gcgcgtccag gattcgttga cgaagccggg gatggcgtcc
     1441 ttcttcaccg ccagggccgg cacccaccag gagtggatca cgtcggccgc ggtgatcagg
     1501 aagcgcacct tggtgcccac cggcaccacc agcggctcgt cgacctccag caggtaatgc
     1561 tcgttcttct cggccttgtt gtagatctgg tcggtgggcg tggccaggtt gctgaagaac
     1621 tccacgtcct ggcccaggta cttgtagtgc catttccact ggtagccggt gacctggata
     1681 tccagctcgg actcggaagt gtcgtagatg tcgatcagcg tcttggtggc cggcacggcc
     1741 atcgcgacca ggatgacgaa gggcacgacg gtccagagga tctctaccgt ggtgctttcg
     1801 tggaagtgcg ccggctgctg gccggtggag cggcggtgga tgagcatcga ccagaacatc
     1861 acgccgaaga ccaccacgcc gatcacgacg cagatccaga agatgatcat gtgcaggtcg
     1921 aagactgaac ggctgacctc ggtgacaccc ggcagcatat tcactgccca ctcggcgtgc
     1981 gccgagccaa atgccagcca cagcaggagg cccatccaga ctcgtggatg tcgcatcatt
     2041 gcgggttccc ctcgttgttc ttgttatccc gccggctaag cctgcggctc agggatcgac
     2101 catgccgata ctgctggctg aaactgtcga aacctctccg tgccgcagcc cgtccggttc
     2161 catcaggtaa cgccttgcga ttcgagtata gccagcgacc gcgacatcac aacgcagtca
     2221 gaaaattaac gcccgatttc ttacgcatcc cgcggcgccc ctagggatgc gcggcatgac
     2281 gacttttcga caggccttct atatagccgc cctgcataac cattaaataa atatgacaat
     2341 ccgatcttag cggcgctcgc ctgccagcta aggtgagttt cgtttgttcg cttcatgtcc
     2401 ttccggagcc gtcatgaata cccccgcc
//
LOCUS       DATIHC010000764         1746 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30185, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000764 DATIHC010000000
VERSION     DATIHC010000764.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1746)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1746)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1746
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30185"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..979
                     /locus_tag="VLF16_12710"
     CDS             <1..979
                     /locus_tag="VLF16_12710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016491006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HSX71782.1"
                     /translation="AMVNQPSYNPNNRRSMQPAAMRNRAMIDVFEPGSTVKPISMAAA
                     LQTGRWKPEDKVEVYPGSLQIGRYTIKDVSRTQGPILDLTGILINSSNVGMSKVAFDI
                     GGETIHDMMSKVGFGQDTGLGFPGERVGELPNHREWRKAETATLSYGYGVSVTAIQMA
                     HAYATLANNGQVLPLSMTRVDRQPVGAQAVPAEVAKTLQLMLQQVVEAPRGVFRAQVP
                     GYHVSGKSGTARKASVGSKGYRENAYRSMFAGFAPSSNPRIAMMVVVDEPSKDGYYGG
                     LVSAPVFSKVMAGSLRLMNITPDNLQPPAEPAAAQPQTATAAVTPGGRI"
     gene            979..>1746
                     /locus_tag="VLF16_12715"
     CDS             979..>1746
                     /locus_tag="VLF16_12715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HSX71783.1"
                     /translation="MPMPLNQLLPQAQGNALIRELTLDSRKVRPGDLFLAVPGLAQDG
                     RAHIADAVARGAAAIAYEAEGAGVMTAHSAELVSIKGLAGQLSAIAGRFYGEPSRALR
                     LVGVTGTNGKTSVSQLVAQALDLLGERCGIVGTLGTGFFEALQSGRHTTPDPVSVQAT
                     LAELKQAGARAVAMEVSSHGLDQGRVAALDFDVAVYTNLSRDHLDYHGSMEAYGAAKA
                     KLFAWPSLKARVVNLDDAFGRELAAQPSESRLIGYSLS"
BASE COUNT          295 a          617 c          578 g          256 t
ORIGIN      
        1 ggccatggtc aatcagccgt cctacaaccc gaacaaccgc cgcagcatgc agccggcggc
       61 gatgcgcaac cgcgccatga tcgacgtgtt cgagccgggc tcgacggtca agccgatctc
      121 catggccgcc gccctgcaga ccgggcgctg gaagccggaa gacaaggtcg aggtgtaccc
      181 gggctcgctg cagatcggcc gttacaccat caaggacgta tcccggaccc aggggccgat
      241 cctcgacctg accggcatcc tgatcaactc gtccaacgtc ggcatgagca aggtcgcctt
      301 cgacatcggc ggcgagacca tccacgacat gatgagcaag gtgggcttcg gtcaggacac
      361 cggcctgggc ttccccggcg agcgcgtcgg cgagctgccg aaccatcgcg agtggcgcaa
      421 ggccgagacc gcgaccctgt cctacggtta cggcgtctcg gtgaccgcga tccagatggc
      481 ccatgcctat gccacgctgg ccaacaacgg ccaagtgctg ccgctgtcga tgacccgtgt
      541 cgatcgccag ccggtcggtg cacaggcggt gccggccgaa gtggccaaga cgctgcagct
      601 catgctgcaa caggtggtcg aagccccgcg gggcgtattc cgtgcccagg tgccggggta
      661 ccacgtgtcc ggcaagagcg gcaccgcgcg caaggccagc gtcggcagca agggctatcg
      721 ggaaaacgcc tatcgctcca tgttcgccgg cttcgcgccc agctccaatc cgcgcatcgc
      781 gatgatggtg gtggtcgacg agcccagcaa ggacggttac tacggtggtc tggtatcggc
      841 ccccgtgttc agcaaggtga tggccggctc gctgcgcctg atgaacatca cgccggacaa
      901 cctgcagccg ccggccgagc cggccgcggc gcaaccgcag accgccaccg ccgccgtcac
      961 gccgggaggg cgaatctgat gcccatgccg ctcaatcaat tgctgccgca ggcgcagggt
     1021 aatgcgctga ttcgcgagct cactctggac agccgcaagg tgcgccccgg cgacctgttc
     1081 cttgccgtgc ccggtctggc tcaggacggc cgtgcgcaca tcgccgacgc cgtggctcgc
     1141 ggcgccgccg ccatcgccta cgaggccgaa ggtgccggcg tcatgaccgc gcacagcgcc
     1201 gagctggtgt cgatcaaggg cctggccggc cagctctccg ccatcgccgg acgtttctat
     1261 ggcgagccga gtcgcgccct gcgcctggtc ggcgtcaccg gtaccaacgg caaaaccagc
     1321 gtcagccaac tcgtcgccca ggcgctggat ctgctgggcg agcgctgcgg catcgtcggc
     1381 accctcggca ccggcttctt cgaggccctg cagagcggcc gccacaccac gccggacccg
     1441 gtctcggtgc aggcgactct ggccgagctg aagcaggccg gcgcccgcgc cgtggccatg
     1501 gaggtttcct cccacgggct cgaccagggt cgtgtggcgg cactggactt cgacgtggcg
     1561 gtgtacacca acctgtcccg cgatcacctg gactaccacg gcagcatgga ggcctatggc
     1621 gccgccaaag ccaagctgtt cgcctggccg agcctgaagg cgcgggtggt caacctggac
     1681 gacgccttcg gtcgcgaact ggccgcgcag ccaagcgagt cgcggttgat cggctacagc
     1741 ctgagc
//
LOCUS       DATIHC010000765         2562 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_32667, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000765 DATIHC010000000
VERSION     DATIHC010000765.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2562
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32667"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1497)
                     /locus_tag="VLF16_12720"
     CDS             complement(<1..1497)
                     /locus_tag="VLF16_12720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013715814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015473 - fimbrial usher porin activity
                     [Evidence IEA];
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus outer membrane usher protein"
                     /protein_id="HSX71784.1"
                     /translation="MPSGKVVEVRERQGRLFVERGELIAAGVRVESAGEPWVALDGIA
                     DLGSEYQQDSQRLLLTLPSEWLPEQSFGTTRLTEPLPAQSSFGMLFNYDLYYSDSDSG
                     VHFANTWLEQRVFDGFGVVSNTGVYRHSFSGPSYQDGYIRYDTTWRFNRQDDLMSFGG
                     GDLITDALTWNSAVRLGGLQIARNFSLRPDLITYPLPRFEGDAAVPSTLDLFIDNSRV
                     SSENLRPGPFTLNTVPYISGAGTATLVTTDALGRQVSTAVPFYVTDTLLKKGLFDYSL
                     SAGKLRRDYGVDNFAYGSFASSGTLRYGISDSFTLEGHAELGDDLRLGGVGGTWGVGL
                     FGTLTASLSQSQGLGNGQQYSLGYSYYARRFGITAQRIQRTSDYADLSRVVALEDGTS
                     GGRLSKRSDQLTFTFSPERLGSFGVGYFANEEQDGTRTRLLNLSWSKSLWSNSSVYLS
                     VNREIGESGYSAQAQVVIPFDLLSTVSAGLERNSEGDQRTRVNYSRTPP"
     gene            complement(1613..2374)
                     /locus_tag="VLF16_12725"
     CDS             complement(1613..2374)
                     /locus_tag="VLF16_12725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013789953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0061077 - chaperone-mediated protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HSX71785.1"
                     /translation="MNDHGKFSPSPLLSLWLLALWLLAPASQAASSILIWPINPLIDA
                     EHKAAALWLENRGQAPVDLQIRVLAWQQSGFEDQLVPQKAVVGSPPMATLQPGKRQLV
                     RLVRLQTPAAGTLQTYRVLVDEVLPPNERPPELGVQFQMRYSVPLIVTGAGAYLDDGA
                     SDAPRRDQALAPELHYRIADSGGQRFLYVRNRGPAHARLSQVELGRFTLAKGLLGYVL
                     PGAEMRWPLPAAAPAKGPLHARINEWKESHAIQPY"
     gene            complement(2371..>2562)
                     /locus_tag="VLF16_12730"
     CDS             complement(2371..>2562)
                     /locus_tag="VLF16_12730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003125348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein U domain-containing protein"
                     /protein_id="HSX71786.1"
                     /translation="QLYQDAGYSVVWGNGSNGGASISTTFPASGNSLTYPVYARLFSV
                     SPMPSAGVYTDTVTVTLSY"
BASE COUNT          392 a          793 c          957 g          420 t
ORIGIN      
        1 gggcggggtg cggctgtagt tgacccgtgt gcgctggtcg ccctcgctgt tgcgctcgag
       61 gccggcggag acggtggaca gcaggtcgaa ggggatcacg acctgcgcct gggcggaata
      121 gcccgactcg ccgatttccc ggttcaccga gaggtagacg ctgctgttgc tccacaggct
      181 cttcgaccag gacaggttca atagccgggt acgcgtgcca tcctgctctt cattggcgaa
      241 gtagccgacg ccgaacgagc cgaggcgctc gggactgaag gtgaaagtca actgatcgct
      301 gcgtttgctc agccggccgc cactggtgcc gtcctcgagg gcgacgacgc ggctgagatc
      361 ggcatagtcc gaggtgcgct ggatgcgctg ggcggtgatg ccgaagcgcc gtgcgtagta
      421 gctgtagccc aggctgtact gctggccgtt gcccaggccc tggctctggc tgagcgaggc
      481 ggtgagggtg ccgaacaggc cgacacccca ggtgccgccg accccgccca ggcgcaggtc
      541 gtcgccgagc tccgcgtggc cctcgagggt gaagctgtcg ctgatgccgt agcgcagggt
      601 gccgctgctg gcgaagctgc cgtaggcgaa gttgtccacg ccatagtcgc ggcgcagctt
      661 gccggcggac agcgaatagt cgaacagccc cttcttgagc agcgtgtcgg tgacgtagaa
      721 gggcacggcg gtgctcacct ggcgaccgag ggcgtcggtg gtgaccaggg tcgcggtgcc
      781 ggcgccgctg atgtatggca cggtattgag ggtgaagggc ccggggcgca ggttttcact
      841 gctgacccgc gagttgtcga tgaacagatc gagggtgctg ggcaccgcgg cgtcgccctc
      901 gaagcgcggc agcgggtagg tgatcaggtc cgggcgcagg gagaagttgc gggcgatctg
      961 caggccgccg aggcgtacgg cgctgttcca ggtcagtgcg tcggtgatca ggtcgccgcc
     1021 gccaaagctc atcaggtcgt cctggcggtt gaagcgccag gtggtgtcgt agcggatgta
     1081 accgtcctgg tagctcggcc cgctgaagct gtggcggtat acgccggtgt tggacaccac
     1141 gccgaagccg tcgaacacgc gttgctccag ccaggtgttg gcgaagtgca cgccgctgtc
     1201 actgtcgctg tagtagaggt cgtagttgaa cagcatgccg aaggagctct gcgccggcag
     1261 cggctcggtg aggcgggtgg tgccgaagct ctgttccggc agccattcgc tgggcagggt
     1321 aagcagcagg cgctggctgt cctgctgata ctcgctgccg aggtcggcga tgccgtccag
     1381 cgccacccag ggttcgcccg cggactcgac ccgcacgccg gcggcgatca gctcgccgcg
     1441 ctcgacgaag agacgcccct ggcgctcgcg cacttccacc accttgccgc tcggcatcgc
     1501 gttcaccagc agctccaggt acagcagctg ggcgtccgcc agctgctccg acgtctcggc
     1561 cagcgccggt ggacagagca gcagcgccag caggcagagg cggcgcagcc ggtcagtaag
     1621 gctggatggc gtgggactct ttccattcgt tgatccgggc gtgcagcggt cctttggcgg
     1681 gggcggcggc gggcaacggc cagcgcattt cggcgcccgg cagcacgtag ccgagcaggc
     1741 ccttggccag ggtgaagcgg ccgagttcga cctgcgagag ccgggcgtga gcagggccgc
     1801 ggttgcgtac gtagaggaag cgctggccgc cgctgtcggc gatgcggtag tgcagctcgg
     1861 gagcgagggc ctggtcgcgg cgcggcgcgt cactggcgcc gtcatccaga tacgctcccg
     1921 cgcccgtgac gatcagcggc accgagtaac gcatctggaa ttgcacgccg agctcgggcg
     1981 gccgctcgtt gggcggcagc acttcgtcca ccagcacccg ataggtctgc agggttcctg
     2041 ccgcgggcgt ctgcagcctg accaggcgaa ccagctggcg tttgcccggc tgcagcgtgg
     2101 ccatgggcgg gctgccgacc actgccttct gcgggacgag ctggtcctcg aagcccgatt
     2161 gctgccaggc cagcacgcgg atctgcaggt cgaccggcgc ctggccgcgg ttctccagcc
     2221 agagcgcggc ggccttgtgc tcggcgtcga tcagcggatt gatcggccag atcaggatgg
     2281 agctggcggc ctggctggcc ggcgcgagca gccagagggc cagcagccag agcgagagga
     2341 gaggagaggg cgagaacttg ccatgatcgt tcaatagctc agagtcactg tgacggtgtc
     2401 ggtgtacacg ccggccgacg gcatggggct cacgctgaac agccgcgcgt agaccgggta
     2461 ggtcaggctg ttgccgctgg ccgggaaggt ggtgctgatg ctggcgccgc cgttgctgcc
     2521 attgccccag acgacgctgt agcccgcgtc ctggtacagc tg
//
LOCUS       DATIHC010000766         2768 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_38351, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000766 DATIHC010000000
VERSION     DATIHC010000766.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2768)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2768)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2768
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38351"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..968)
                     /locus_tag="VLF16_12735"
     CDS             complement(<1..968)
                     /locus_tag="VLF16_12735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014854077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HSX71787.1"
                     /translation="MPSVADDKLTKSGATPLWRSLRGRMLIALLLVFSLGFGNLAVHL
                     YGTRDELRRAVLTLQAHAVSEGVSGLADVARLPLEYGGVELAYTLYSADGKVLWFSDN
                     LDKPGRLRTDMLERESHWWRWSPIGGRVINVPVRLADGSVLMVRRDDAREREMIDDLL
                     LDRLRQSLVVMLPLGVISVLLILWLLHWTLRPVRHAARLAREIGPSAPTRRIPLTDLP
                     SEFHPLAEAANSALDRLAGAYAAERRFVADAAHELRTPLTVLDLRLQDARDSRQPDWP
                     ALDQEMQQMRRLVAQLLELARQDGASTESSAASGTVRLADGSVLMVR"
     gene            1033..>2768
                     /locus_tag="VLF16_12740"
     CDS             1033..>2768
                     /locus_tag="VLF16_12740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003292622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSX71788.1"
                     /translation="MHAKLPPFFRRPATLALAIAALPSLGLAEEAGEALTLDTTDIVV
                     TAAGYEQQLIEAPASITVIGKEQLEGKYYRDVTDALQDIPGVSIEGGAGGKLESTSIN
                     IRGLGEQYTMFLVDGKPLGASGEAYYNGFGSATQFGWLPPMSAIERIEVIRGPMSSLY
                     GSSALAGVINVITKKATSRDWSGSISYDKLLHEDNDAGPADQARYYLSGPLVQEHLAL
                     SLYGSHHHRDEDEIIGGYAEKTAIDNTARLDIVPNDMHSFQLEAGRSESDNERTELSG
                     ADGEMNNVRTHYGLTHDLDWGNGVRTTTFATTALEEIENGSSESEYTNDLINTKTFIP
                     LENHTITLGGEYKWETITHDQGRFYGADMELERWQRALFVEDEYYLTEAFSITAGLRY
                     DENEHYGEEVIPRLYGVYRFSEWVLKGGVSGGYKAPSLKQADSSIVENAGRGRSYDMG
                     NSDLKPESSINYEMGLMWDADNGIRSGVTVFYTDFEDKIDKRLFCTSPASAPACTVNG
                     IAPRQTINQYVNQDAAELRGVEAFFNTPLSETVELRTNYTFSDSEITESEASPEDVGK
                     PFNNLPKHMFNVG"
BASE COUNT          526 a          979 c          866 g          397 t
ORIGIN      
        1 cgcaccatca gcacggagcc atcggccagg cgcaccgttc cgctggcggc actgctctcg
       61 gtcgaggcgc cgtcctggcg cgcgagctcc agcagctgcg ccaccagccg gcgcatctgc
      121 tgcatctcct ggtcgagcgc cggccagtcg ggttgccggc tgtcgcgggc atcctgcagg
      181 cgcaggtcga gcaccgtcag cggcgtgcgc agttcgtggg cggcatcggc cacgaagcgc
      241 cgctcggcgg catacgcgcc ggccaatcgg tcgagggcgg aattggccgc ttccgccagg
      301 gggtggaact cgctcggcag gtcggtcagc gggatgcgcc gggtcggtgc gctcggcccg
      361 atctcgcggg cgagccgggc ggcgtggcgc accgggcgca gcgtccagtg gaggagccag
      421 aggatcagca gcaccgaaat cactcccagc ggcagcatca ccaccaggct ctggcgcaga
      481 cggtcgagca gcaggtcgtc gatcatctcc cgctcgcgcg catcatcgcg ccgcaccatc
      541 agcacggagc catcggccag gcgcaccggc acgttgatca cccgtccgcc gatggggctc
      601 cagcgccacc agtggctctc gcgctccagc atgtcggtgc gcagtcgccc cggcttgtcg
      661 aggttgtcag agaaccacag caccttgccg tctgcggaat acagcgtgta ggcgagctcg
      721 acgccaccgt actccagcgg caggcgcgcg acatccgcga gccccgaaac gccctcgctc
      781 accgcatgcg cctggagggt cagcacggcg cgccgcagct cgtcgcgcgt gccgtacagg
      841 tgcacggcga ggttgccgaa gcccaggctg aacaccagca gcaaggcgat cagcatgcgc
      901 ccgcgcaggc ttcgccacag gggcgtggcg ccggatttcg tcagcttgtc gtcagcaacc
      961 gatggcatat tcgccgccca cataaatgag atcgcttatc atttgtttta tattttgggg
     1021 agcccgttcg tcatgcatgc caagttgcca ccgtttttcc gccgtcccgc cacactcgca
     1081 ctcgcgattg ccgccctgcc ctccctgggc ctggccgaag aggccggcga ggcgctcacc
     1141 ctcgacacca ccgatatcgt ggtcaccgct gccggctacg agcagcagct gatcgaggcg
     1201 cccgcctcca tcaccgtgat cggcaaggag cagttggagg gcaaatacta ccgtgacgtg
     1261 acggacgccc tgcaagacat ccccggcgtg tcgatcgaag gcggcgcggg cggtaagctg
     1321 gaaagcacct cgatcaacat ccgcggcctg ggcgagcagt acaccatgtt cctggtcgac
     1381 ggtaagccgc tcggcgcctc cggagaggcc tactacaacg gcttcggcag cgccacgcag
     1441 ttcggctggc tgccgccgat gtccgccatc gagcgcatcg aggtgatccg cggcccgatg
     1501 tcctcgctct acggctccag cgcgctggcc ggcgtgatca acgtcatcac caagaaagcc
     1561 acctcgcgcg actggtccgg cagcatcagc tacgacaagc tgctgcacga ggacaacgac
     1621 gccggcccgg ccgaccaggc ccgctactac ctcagcggcc cgctggtgca ggagcacctg
     1681 gcgctgagcc tgtacggctc gcatcaccac cgcgacgaag acgagatcat cggcggctac
     1741 gcggaaaaga ccgccatcga caacaccgcc cggctcgaca tcgtgcccaa cgacatgcac
     1801 agcttccagc tggaggccgg tcgcagcgag agcgacaacg agcgcaccga gctgagcggc
     1861 gccgacggcg agatgaacaa cgtccgcacc cactacggcc tcacccacga cctcgactgg
     1921 ggcaacggcg tgcgcaccac caccttcgcc accaccgcgc tggaggagat cgagaacggc
     1981 agctccgagt ccgagtacac caacgacctg atcaacacca agaccttcat tccgctggaa
     2041 aaccacacca tcaccctggg cggcgaatac aagtgggaaa ccatcaccca tgaccagggc
     2101 cgcttctacg gcgcggacat ggagctggag cgctggcagc gcgcgctgtt cgtcgaagac
     2161 gagtactacc tgaccgaggc cttctcgatc accgccggcc tgcgctacga cgagaacgag
     2221 cactacggcg aggaagtcat cccgcgcctc tacggcgtgt atcgcttcag cgaatgggtg
     2281 ctcaagggcg gggtgagcgg cggctacaag gcgccgtcgc tgaagcaggc cgactccagc
     2341 atcgtcgaga acgccggccg cggtcgctcc tacgacatgg gcaactcgga cctcaagccc
     2401 gaaagcagca tcaactacga gatgggcctg atgtgggacg ccgacaacgg catccgctcc
     2461 ggcgtcacgg tgttctacac cgacttcgag gacaagatcg acaagcgcct gttctgcacc
     2521 agcccggcct cggcgccggc ctgtacggtc aatggcatcg ccccgcgaca gaccatcaac
     2581 cagtacgtga accaggacgc cgccgagctg cgcggtgtgg aggccttctt caacacgcct
     2641 ctgagcgaga ccgtggagct gcggaccaac tacaccttct ccgacagcga gatcaccgag
     2701 tccgaggcct cgccggagga tgtcggcaag ccgttcaaca acctgcccaa gcacatgttc
     2761 aacgtcgg
//
LOCUS       DATIHC010000767         2879 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13694, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000767 DATIHC010000000
VERSION     DATIHC010000767.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2879)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2879)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2879
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13694"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..214)
                     /locus_tag="VLF16_12745"
     CDS             complement(<1..214)
                     /locus_tag="VLF16_12745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008073341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSX71789.1"
                     /translation="MPRIGLLSALITLAAGHAFAAGSPGVEHNTQAFLQALEAGGGKP
                     LEALSPLDARAVLVGAQASVKVDLSGV"
     gene            complement(228..656)
                     /locus_tag="VLF16_12750"
     CDS             complement(228..656)
                     /locus_tag="VLF16_12750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009622165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organic hydroperoxide resistance protein"
                     /protein_id="HSX71790.1"
                     /translation="MSIEKVLYRAYAEAYGGRDGRAVSSDGILDVALTTPKELGGAGG
                     DGTNPEQLFAAGYSACFLGALKFVGMRDKLSVPADASIEGVVGIGAVPTGFAIEVELR
                     ISLPGLAREAAQELIQRAHIVCPYSNATRNNIDVTLTLVD"
     gene            complement(704..1357)
                     /locus_tag="VLF16_12755"
     CDS             complement(704..1357)
                     /locus_tag="VLF16_12755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018925962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HSX71791.1"
                     /translation="MATASAVAGKSLLTPLDHTLIMIDHQSQMAFATKSIDAVALRNN
                     AALVAKAAQEFGVSTILTTVAEKSFSGPIFDEIKSVFPDHKVIDRTTMNTWEDPRIAV
                     EVNKAGKNKIVLAGLWTSVCIVGPALSALDQGFEVYVIADACGDVSDEAHDMALQRMI
                     QLGARPMTSLQYLLELQRDWARGETYEQTVKTAIANGGAYGLGLIYAKTMFNASEGH"
     gene            complement(1571..2101)
                     /locus_tag="VLF16_12760"
     CDS             complement(1571..2101)
                     /locus_tag="VLF16_12760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71792.1"
                     /translation="MHDILLVCYSRTGNTRLVADQLARLTGWPLALIEDVKPRAGASG
                     DWRCMLDAWLRSCPDYRYEGPPLERFDHVVLLTPVWMKGLAAPLRAFLSDQDLSHKRI
                     SVVCTQGGRGGFNAVEEIATLTRQVPSPVQILLQSEVLGGLSPHRLEDFVVQVLASST
                     YQRDRQRPSWLSPVAT"
     gene            complement(2309..>2879)
                     /locus_tag="VLF16_12765"
     CDS             complement(2309..>2879)
                     /locus_tag="VLF16_12765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="membrane protease subunit, stomatin/prohibitin"
                     /protein_id="HSX71793.1"
                     /translation="DPNPQYKQRMVKVQQALAELAVARQNRLKEEEEKLLVTARGERE
                     VEARRQETLRDQIEQTTQAETQKQLAVINAEREKQRAEIEKQTAELLRDKAAITADAT
                     KITADAEAYARKAVIEADGALQPKLDALVQINKVWAEAASQAPVPGVMMGGAGGGASA
                     SRQDEIGQLMGILATKAARDLSLDMKVKE"
BASE COUNT          408 a          901 c         1076 g          494 t
ORIGIN      
        1 tcacgccgga caggtcgacc ttgaccgagg cctgggcgcc gaccagcacg gcgcgggcgt
       61 ccagcgggct gagggcttcc agcggcttgc cgccgccggc ttccagggcc tggaggaagg
      121 cctgggtgtt gtgctcgacg ccggggctgc cggcggcgaa ggcgtggccg gcggccaggg
      181 tgatcagggc actgagcaag ccaatacgag gcatggtggt agtcctttta gtcgaccagc
      241 gtgagagtca cgtcgatgtt gttgcgggtg gcgttggagt acgggcagac gatgtgcgcg
      301 cgttggatca gctcctgcgc cgcctcacgg gccaggcctg gcaggctgat gcgcagctcc
      361 acctcgatgg cgaagccggt gggcacggcg ccgatgccga ccacgccctc gatggaggcg
      421 tcggccggca cgctgagctt gtcgcgcatg ccgacgaact tcagggcgcc gaggaaacag
      481 gcggaatagc cggcggcgaa cagctgctcg gggttggtgc cgtcgccgcc ggcgccgccc
      541 agttccttgg gcgtggtcag ggcgacgtcg aggatgccgt cggaggacac ggcgcggccg
      601 tcacggccgc cgtaggcttc ggcgtaggcg cggtagagga ctttttcgat ggacatggcg
      661 aatctccagg gcggggccgg gccgcggggc ccggcgcgcg cgatcagtgg ccttcggagg
      721 cgttgaacat ggtcttggcg tagatcaggc cgaggccgta ggcgccgccg ttggcgatgg
      781 cggtcttcac ggtctgctcg taggtctcgc cgcgggccca gtcacgctgc agctcgagca
      841 ggtactgcag cgaggtcatc ggccgcgcgc cgagctggat catgcgctgc agggccatgt
      901 cgtgggcctc gtcggagacg tcgccacagg catcggcgat gacgtacacc tcgaagccct
      961 gatccagcgc ggacagggcc ggaccgacga tgcacaccga ggtccacagg ccggcgagaa
     1021 cgatcttgtt cttgccggcc ttgttcactt ccacggcgat gcgcgggtct tcccaggtgt
     1081 tcatggtggt gcggtcgatc accttgtggt cggggaacac cgacttgatc tcgtcgaaga
     1141 tcggcccgga gaagcttttc tcggcgacgg tggtgaggat ggtggagacg ccgaattcct
     1201 gggccgcctt ggccaccagg gcggcgttgt tgcgcagggc cacggcgtcg atcgacttgg
     1261 tggcgaaggc catctgcgac tggtggtcga tcatgatcag ggtgtggtcg agcggggtga
     1321 gcagggactt gccggcgacg gcggaggcgg tggccatggt gacgctccag agaggggata
     1381 tgaggagcat cgagtgtcgc gccgggccgc ggcgcgctct tgcatgggcg tgccggtttt
     1441 gcaccggcgt gcgcaaagaa aacaccccgc gggcggggcg ttggctcggg tcggcaggcc
     1501 gcatcgccgg cccttgaggc gcgcgccttg atcggtgcgg agacacccct cagcaggtgc
     1561 tgagcacggc tcaggtggcg acgggcgaca gccaggacgg ccgctgacgg tcgcgctggt
     1621 aggtgctgga ggccagcacc tgcaccacga agtcttccag gcgatgcggc gacagcccgc
     1681 cgagcacttc gctctgcagc aggatctgca ccggcgaggg cacctggcgg gtcagcgtgg
     1741 cgatctcctc gacggcattg aagccgccgc ggccaccctg ggtgcagacc accgagatgc
     1801 gcttgtgcga caggtcttgg tcgctgagga aggcgcgcag gggcgcggcc aggcccttca
     1861 tccacaccgg ggtgagcagc acgacgtggt cgaagcgttc gagcggcggg ccttcgtagc
     1921 ggtagtcggg gcagctgcgc agccaggcgt cgagcatgca gcgccagtca ccgctggcgc
     1981 cggcgcgggg tttgacgtcc tcgatcagcg ccagcggcca gccggtgagc cgggccagct
     2041 ggtcggccac caggcgggta ttgccggtac gcgagtagca caccaggaga atgtcgtgca
     2101 tggcgacctc catcgctcga tccgggacgt tcccggctac gactccagcc tacgcggcgc
     2161 agggcggtgg ggattgatcc gcatcaagga agaagcggct ggacgggcgc tgcacgtccc
     2221 gctttgattc tctctcccgt ttacgggaga ggggtgagga gaagcgctcg cctgggcatt
     2281 acagaccgtc aagctcacgc aggctgactt attccttgac cttcatatcc agcgacaggt
     2341 cgcgggcggc cttggtggcg aggatgccca tcagctggcc gatctcgtcc tggcggctgg
     2401 cgctggcacc gccgccagcg ccgcccatca tcacgcccgg caccggcgcc tgggaggcgg
     2461 cctcggccca gaccttgttg atctgcacca gggcatcgag cttgggctgc agggcgccgt
     2521 ccgcctcgat cacggccttg cgcgcatagg cttcggcgtc ggcggtgatc ttggtggcgt
     2581 ccgcggtgat cgccgccttg tcgcgcagca gctcggcggt ctgtttctcg atctcggcgc
     2641 gctgcttctc gcgttcggcg ttgatcaccg ccagttgctt ctgggtctcg gcctgggtgg
     2701 tctgctcgat ctggtcgcgc agggtctcct ggcgacgggc ctcgacctcc cgctcgccgc
     2761 gggcggtgac cagcagcttc tcttcctctt ccttgaggcg gttctgccgc gccacggcca
     2821 gttcggccag ggcctgctgg accttgacca tgcgctgctt gtactgcggg ttggggtcg
//
LOCUS       DATIHC010000768         3766 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37134, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000768 DATIHC010000000
VERSION     DATIHC010000768.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3766
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37134"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            29..1828
                     /gene="lepA"
                     /locus_tag="VLF16_12770"
     CDS             29..1828
                     /gene="lepA"
                     /locus_tag="VLF16_12770"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HSX71794.1"
                     /translation="MSDLSHIRNFSIIAHIDHGKSTLADRFIQLCGGLSDREMEAQVL
                     DSMDLERERGITIKAHSVTLHYPAQDGKTYQLNFIDTPGHVDFTYEVSRSLAACEGAI
                     LVVDAGQGVEAQSVANCYTAIEQGLEVMPVLNKMDLPQAEPERVKEEIEHIIGIDATD
                     AVPCSAKSGMGVIDVLERLVKVIPAPEGEIEAPLQALIIDSWFDNYLGVVSLVRVKHG
                     RVKKGDKILVKSTGKMHQVDSVGVFTPKHTETVDLKAGEVGFIIAGIKDIHGAPVGDT
                     LTLSTTPDVGVLPGFKRVKPQVYAGLFPVSSDDFEDFREALQKLTLNDAALQYEPESS
                     DALGFGFRIGFLGMLHMEIIQERLEREYDLDLITTAPTVVFEVEMKNGETLYVDNPSK
                     LPDPAGILDMREPIVRANILVPQEHLGNVITLCIEKRGVQRDLQFLSSQVQVSYDLPM
                     NEVVLDFFDRLKSVSRGYASLDYSFDRFQSANLVRLDVMINGEKVDALALIVHRDRAH
                     QKGRVLTEKMKELIPRQMFDVAIQAAIGGQIIARTTVKALRKNVLAKCYGGDVSRKKK
                     LLEKQKAGKKRMKQVGSVEIPQEAFLAVLKVDS"
     gene            1834..2685
                     /gene="lepB"
                     /locus_tag="VLF16_12775"
     CDS             1834..2685
                     /gene="lepB"
                     /locus_tag="VLF16_12775"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011332588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HSX71795.1"
                     /translation="MSFNFPLILVIAVAVCGALALLDLMVLAPRRRAAIAAYEGRVGE
                     PDEQILQRLNKEPLLVEYGKSFFPVLAIVLVLRSFLLEPFQIPSGSMKPTLEVGDFIL
                     VNKFAYGIRLPVIDTKIVEVGNPQRGDVMVFRYPSNPSINYIKRVVGLPGDKIGYTVD
                     KRLLVNGKPVAEEFLGEEPGSLGRTLEYREKLGEAEHMIRKQLHRNVRPGDEWVVPQG
                     HYFMMGDNRDDSNDSRYWQDAAIPQELWGMVPDQNIVGKAFAVWMSWPDPKLRSLPNF
                     SRVGLIR"
     gene            2778..3155
                     /locus_tag="VLF16_12780"
     CDS             2778..3155
                     /locus_tag="VLF16_12780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003455229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4845 domain-containing protein"
                     /protein_id="HSX71796.1"
                     /translation="MTFARSQKGMSLLGWMVVLALVAFFASATFKMLPHYLDYMSLEK
                     IITSAENEASQGINSVNALYGHISRGLEVNSIRDFDLKESIFIQQENNEFLVHLQYEK
                     REPLIQNLDLVAKFDKEFRIRSQ"
     gene            3152..>3766
                     /gene="rnc"
                     /locus_tag="VLF16_12785"
     CDS             3152..>3766
                     /gene="rnc"
                     /locus_tag="VLF16_12785"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014819522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HSX71797.1"
                     /translation="MSQSLARLERKLGHTFQNQELMLLALTHRSFAGRNNERLEFLGD
                     AILNFVAGEALYERFPQAREGQLSRLRARLVKGETLAVLARGFELGEYLRLGSGELKS
                     GGFRRESILADALEALIGAIYLDAGMDVARARVLDWLAGELDGLTLVDTNKDPKTRLQ
                     EFLQSRAAELPRYEVVDIQGEPHCRTFFVQCEVALLTDKTQGQGA"
BASE COUNT          735 a         1123 c         1175 g          733 t
ORIGIN      
        1 ctgcccgcgg ctttttgagt gttgatccgt gagtgacctg agtcatatcc gcaatttctc
       61 catcatcgcc cacatcgacc atggcaaatc gaccctggcc gaccgcttca tccagctctg
      121 tggcggcctg tccgatcgcg agatggaggc ccaggtcctc gactccatgg acctggagcg
      181 cgagcgcggg atcaccatca aggcgcatag cgtgaccctg cactacccgg cgcaggacgg
      241 taagacctat cagctgaact tcatcgatac ccccggccac gtcgacttca cttatgaagt
      301 cagccggtcg ctggccgcct gcgagggtgc gatcctggtc gtggatgccg gtcagggcgt
      361 tgaagcgcag tcggtcgcca actgctacac cgccatcgag cagggcctcg aggtcatgcc
      421 ggtgctgaac aagatggacc tgccccaggc cgagccggag cgggtcaagg aagaaatcga
      481 gcacatcatc ggcatcgacg ccaccgacgc cgtgccttgc agcgccaaga gcggcatggg
      541 cgtgatcgac gtgctcgagc gcctggtcaa ggtcattccg gcgccggaag gcgagatcga
      601 ggcgccgctg caggcgctga tcatcgactc ctggttcgac aactacctgg gcgtggtctc
      661 gctggtgcgg gtcaagcacg gccgggtcaa gaagggcgac aagattctgg tcaagtcgac
      721 cggcaagatg caccaggtgg acagcgtggg cgtgttcacg ccgaagcaca ccgagactgt
      781 cgatctcaag gccggtgagg tgggctttat catcgccggc atcaaggaca ttcacggtgc
      841 gccggtgggt gataccctga ccctgtccac cacgccggat gtcggcgtgc tgccgggctt
      901 caagcgcgtc aagccgcagg tctatgccgg cctgtttccg gtcagctccg acgacttcga
      961 ggacttccgc gaagccctgc agaagctgac cctgaacgac gccgccctgc agtacgagcc
     1021 ggaaagctcc gacgccctgg gcttcggctt ccgtatcggt ttcctcggca tgctgcacat
     1081 ggagatcatc caggagcgcc tcgagcgcga gtacgacctg gacctgatca ccacggcgcc
     1141 gaccgtggtc ttcgaagtcg agatgaagaa cggtgagacg ctgtacgtcg acaacccgtc
     1201 caagttgccc gatcccgccg gcattctcga tatgcgtgag ccgatcgtgc gcgccaacat
     1261 cctggtgccg caggaacatc tgggcaacgt catcacgctg tgcatcgaga agcgcggcgt
     1321 gcagcgcgac ctgcagttcc tcagcagtca ggttcaggtt tcctacgatc tgccgatgaa
     1381 cgaagtggtg ctggacttct tcgatcgtct gaagtcggtg agccgcggtt acgcctcgct
     1441 ggactacagc ttcgatcgtt tccagtcggc caacctcgtg cgtctggacg tgatgatcaa
     1501 tggtgagaaa gtcgatgccc tggcgctcat cgtgcatcgt gatcgtgctc accagaaggg
     1561 tcgtgtgttg accgagaaga tgaaagagct gatcccgcgg cagatgttcg acgtggcgat
     1621 tcaggcggcc atcggtggcc agatcatcgc ccggaccacg gtcaaggcgc tgcgcaagaa
     1681 cgtattggcc aagtgctacg gcggtgacgt cagccgtaag aagaaactgc tggagaagca
     1741 gaaggccggt aagaaaagga tgaagcaggt cggcagtgtg gaaatcccgc aggaagcctt
     1801 cctcgccgta ctcaaggtgg acagttaatc cccatgtcgt tcaacttccc gctgattctg
     1861 gtcatcgccg tcgccgtttg cggcgccctg gctttgctcg atctcatggt gctggccccg
     1921 cgtcggcgtg ctgccatcgc tgcttacgag ggccgtgtcg gcgagcccga cgagcagatt
     1981 cttcagcgcc tgaacaagga gccgctgctg gtcgagtacg gcaagtcgtt ctttccggtg
     2041 ctggccattg tgctggtgct gcgctcgttc ctgctggagc cgttccagat tccttccggc
     2101 tcgatgaagc cgaccctgga agtcggcgat ttcatcctgg tcaacaagtt cgcctacggc
     2161 atccgcttgc cggtgatcga caccaagatc gttgaagtgg gcaacccgca gcgcggcgat
     2221 gtgatggtgt tccgctaccc cagcaatccg agcatcaact acatcaagcg cgtggtgggt
     2281 ctgccggggg acaagatcgg ctataccgtc gacaagcgcc tgctggtgaa tggcaagccg
     2341 gtcgccgaag aattcctcgg cgaggagccg ggctccctgg ggcgtaccct ggagtatcgg
     2401 gagaagctgg gcgaggccga gcacatgatc cgcaagcagt tgcaccgcaa tgtgcggccc
     2461 ggtgacgagt gggtggtgcc gcagggccac tacttcatga tgggtgacaa ccgcgacgat
     2521 tcgaatgaca gccgctactg gcaggacgca gccatccctc aggagctctg gggcatggtt
     2581 cccgaccaga atatcgtcgg caaggcgttc gccgtatgga tgagctggcc ggatcccaag
     2641 ctgcgcagcc tgcccaactt ctcccgggtc ggcctgatcc gctgactcac cgaaactgcg
     2701 aggtgctgtt caacggaatg gcgcctgctt atatatagtc acgggcttca aaataactct
     2761 cagaatcgga gtcgatcatg acgtttgcgc gttcgcagaa ggggatgtcg ctgctgggct
     2821 ggatggtggt gctggcgctg gttgcatttt ttgccagcgc tactttcaag atgctgccac
     2881 attatctcga ctacatgtcg cttgaaaaaa tcatcacctc agctgaaaac gaggcgagtc
     2941 agggcattaa ctcggtgaat gctctttatg ggcatatctc tagaggcttg gaagtaaaca
     3001 gcattcgaga tttcgatctc aaagagtcga tcttcatcca gcaggagaac aatgagtttc
     3061 tggttcatct gcaatatgaa aagcgcgagc cgctgatcca gaaccttgat ctcgtcgcca
     3121 aattcgacaa agaattccga atcagatccc agtgagccaa tccttagccc gtctcgagcg
     3181 caagctcgga cataccttcc agaaccagga gctgatgctc ctggcgctga cccaccgcag
     3241 cttcgccggg cgcaacaacg agcgcctgga atttctcggc gatgccatcc tcaatttcgt
     3301 ggcaggtgaa gcgctgtacg agcgcttccc acaggcccgc gagggccagc tgtcgcgcct
     3361 gcgtgcgcgg ctggtcaagg gcgagacctt ggcggtgctg gcccgtggtt tcgagctggg
     3421 tgaatacctg cgcctgggct cgggcgagct gaagagcggc ggctttcgcc gtgaatcgat
     3481 cctcgccgat gcgctcgagg cgttgatcgg cgccatctat ctggatgccg gcatggacgt
     3541 ggcgcgagcc cgggtgctgg actggctggc cggcgagctg gacggcctga ccctggtgga
     3601 caccaacaaa gacccgaaga cccgtctgca ggaattcctc cagtcgcgcg ccgccgagct
     3661 gccgcgctac gaggtggtgg atatccaggg cgagccgcat tgccggacct tcttcgtgca
     3721 gtgcgaggtc gcgctgctca ccgacaagac ccaggggcag ggcgcc
//
LOCUS       DATIHC010000769         1870 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_21998, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000769 DATIHC010000000
VERSION     DATIHC010000769.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1870)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1870
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21998"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..138
                     /gene="lptC"
                     /locus_tag="VLF16_12790"
     CDS             <1..138
                     /gene="lptC"
                     /locus_tag="VLF16_12790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003302839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HSX71798.1"
                     /translation="EYAQTQQAVRIEAANGVTTAQGMKAYMNDGRINLLSNVRGQHEV
                     R"
     gene            125..670
                     /gene="lptA"
                     /locus_tag="VLF16_12795"
     CDS             125..670
                     /gene="lptA"
                     /locus_tag="VLF16_12795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011912221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0001530 - lipopolysaccharide binding
                     [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide transport periplasmic protein
                     LptA"
                     /protein_id="HSX71799.1"
                     /translation="MRFVKTFPLLLSLGAALGSACAWALPSDRDQPIRVQADSAELDD
                     KQGVAVYRGGVVITQGTLKITGDTVTITQDANGEIEVFTSVGKPAYYEQKPSADKDIV
                     KAYGLTIQYYASNERIVLIDQAKVIQQGNTFEGEKIVYDTQRQIVNAGRATGSNVSVP
                     RPRIDMILQPRKKDGQAEQAQ"
     gene            670..1395
                     /gene="lptB"
                     /locus_tag="VLF16_12800"
     CDS             670..1395
                     /gene="lptB"
                     /locus_tag="VLF16_12800"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HSX71800.1"
                     /translation="MATLKAQHLAKAYKGRQVVRDVSLSIDSGQIVGLLGPNGAGKTT
                     CFYMIVGLVQADQGRVLIDSQDISHQPMHGRARSGIGYLPQEASIFRKLTVADNIMAI
                     LETRKDLDRAGREKALEALLQEFHISHIRDSLGMSLSGGERRRAEIARALATEPKFIL
                     LDEPFAGVDPISVGDIKQIIHHLKAKGIGVLITDHNVRETLDICETAYIVNDGQLIAE
                     GDADTILANQLVKEVYLGHEFRL"
     gene            1536..>1870
                     /locus_tag="VLF16_12805"
     CDS             1536..>1870
                     /locus_tag="VLF16_12805"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003255133.1"
                     /note="sigma factors are initiation factors that promote
                     the attachment of RNA polymerase to specific initiation
                     sites and are then released; sigma 54 factor is
                     responsible for the expression of enzymes involved in
                     nitrogen assimilation and metabolism; the rhizobia often
                     have 2 copies of this sigma factor; in Rhizobium etli
                     RpoN1 shown to be involved in the assimilation of several
                     nitrogen and carbon sources during free-living aerobic
                     growth and RpoN2 is involved in symbiotic nitrogen
                     fixation; in Bradyrhizobium both RpoN1 and N2 are
                     functional in free-living and symbiotic conditions, rpoN1
                     gene was regulated in response to oxygen; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HSX71801.1"
                     /translation="MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESN
                     PMLERQEEGEDFDNSDPMADAAEQNGQTQQDSSSFQDSTVAVNNSEGAEDGEWHDRIP
                     SELPVDTAW"
BASE COUNT          413 a          642 c          560 g          255 t
ORIGIN      
        1 gaatatgcgc agacccagca agccgttaga atcgaggccg ccaacggggt gaccacggca
       61 cagggaatga aagcgtacat gaacgacggc aggatcaacc tgctgtccaa cgtaagaggc
      121 cagcatgagg ttcgttaaaa ccttccccct actgctcagc ctgggtgccg cgctcggaag
      181 cgcctgcgcc tgggcgctgc ccagcgaccg cgaccagccg atccgcgttc aggcggacag
      241 cgcggaactg gacgacaagc aaggcgtggc cgtgtaccgc ggcggcgtgg tgatcaccca
      301 gggcaccctg aagatcaccg gtgacaccgt gaccatcact caggacgcca acggcgagat
      361 cgaggtcttc acctcggtgg gcaagcccgc ctactacgag cagaagccct ccgccgacaa
      421 ggacatcgtc aaggcctatg gcctgaccat ccagtactac gcgagtaacg agcgcatcgt
      481 gctgatcgac caggccaagg tgatccagca gggcaacacc ttcgagggcg agaagatcgt
      541 ctacgacacc cagcgccaga tcgtcaacgc cggccgtgcc acgggcagca acgtttcggt
      601 gccgcgaccg cgcatcgaca tgatcctgca gccgcgcaag aaagacgggc aagcggagca
      661 ggcgcagtaa tggcgactct caaagcccag cacctggcca aggcctacaa aggccgccag
      721 gtggtccgcg acgtcagcct gtccatcgac agcggccaga tcgtcggcct gctcggcccc
      781 aacggtgccg gcaagactac ctgtttctac atgatcgtcg gcctggtcca ggccgatcag
      841 ggccgcgtgc tgatcgacag ccaggacatc agccaccagc cgatgcacgg ccgcgcccgc
      901 tccggcatcg gctatctgcc gcaggaggcc tcgatcttcc gcaagctgac cgtggccgac
      961 aacatcatgg ccatcctcga gacccgcaag gacctcgacc gcgccggccg cgagaaggcg
     1021 ctggaagccc tgctgcagga attccacatc agccacatcc gcgacagcct gggcatgagc
     1081 ctttccggcg gcgagcggcg ccgcgccgag atcgcccgcg ccctggccac cgagcccaag
     1141 ttcatcctgc tcgacgaacc cttcgccggc gtggacccga tctcggtcgg cgacatcaag
     1201 cagatcatcc atcacctcaa ggccaagggc atcggcgtgc tgatcaccga tcacaacgtg
     1261 cgcgagaccc tggatatctg cgagaccgcc tatatcgtca acgacggcca gctgatcgcc
     1321 gaaggcgacg ccgacaccat cctggccaac cagctggtca aggaagtcta tctgggacac
     1381 gagttccgcc tgtgagccga gccccatgcg gggcttgcgc aaaggactgg aatccttcaa
     1441 ggtcaggcat ataatttgct tcctagggcg gccttccgct ctgcagtgga tggcgccgcg
     1501 cgccggcaag tgaacaaggt acccagcccc gcaccatgaa accgtcgcta gtcctcaaga
     1561 tgggccagca gctgacgatg actccgcagc tgcaacaggc catccgcctc ctccagctct
     1621 ccaccctgga cctgcagcag gaaatccagg aagcgctgga atccaatccc atgctggagc
     1681 gccaggagga aggcgaagac ttcgacaact ccgaccccat ggcggacgcc gccgagcaaa
     1741 acgggcagac ccagcaggac agcagcagct tccaggacag caccgtcgcg gtgaacaata
     1801 gcgagggcgc cgaggacggc gaatggcacg accgcatccc cagcgagctg ccggtcgaca
     1861 cggcctggga
//
LOCUS       DATIHC010000770         3090 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37137, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000770 DATIHC010000000
VERSION     DATIHC010000770.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3090
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37137"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..486)
                     /locus_tag="VLF16_12810"
     CDS             complement(<1..486)
                     /locus_tag="VLF16_12810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017360459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX71802.1"
                     /translation="MHFDLADLRLLAAIAGSGSLSKAAASIPVAVSAASTRLRLFEER
                     CGLALFTRTAAGMTPTPAGRLVLERARSVLSEAERLKQTLKELGGQHRITLRLSATTV
                     ANSTFLPATLGPFLADYPEVDLQLVEQKSAEVLHAVQSGESEIGVYDGNLPTGGLLSL
                     PF"
     gene            585..1601
                     /locus_tag="VLF16_12815"
     CDS             585..1601
                     /locus_tag="VLF16_12815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013789221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HSX71803.1"
                     /translation="MTTSLYQRCLADGRLFAVLSAAGFSLKAIFVKLAYAAGPVDAVT
                     LLAMRMGLALPLFLWLLWLSRGQSGAPMGLSGVLRVLLLGMLGYYLSSLFDFYGLEYI
                     SAGLERLILFTYPTLVLLLQAVALRERPSRRTLLAMGICYLGLGIAFVHDIGAASAGS
                     QVLLGAAWVFASAVTYALYYFGTGVMVQRIGSMRLAGLAGAASSLMVLAHYGVSGQLG
                     VEQVRLASLSGEIWLYAALMALCSTVLPVYWMALAVQRMGAAQTAAIGNLGPVLTIVA
                     SWAVLSEAISVYQLAGLALVMFGISRLKPSAARAASSESRVPFGQRLASLFGRSPARQ
                     RPGD"
     gene            complement(1598..2632)
                     /locus_tag="VLF16_12820"
     CDS             complement(1598..2632)
                     /locus_tag="VLF16_12820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012699176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator
                     ligand-binding domain-containing protein"
                     /protein_id="HSX71804.1"
                     /translation="MALHCPWYENDSRCIAAHQQPASLIELCLSRGIDSHRLLRGTGL
                     FLEDVPKAESLISPAQFLTLIDNAQRLLDADDTSFLFGQRLLPGHHGAASQALALANN
                     LQQALELLGELRALLSPLLSPRLLLDEQHAYLYWLDSCGVGAQQRFLLEAQMTAVVAM
                     SRRLGGEALPWQFHFRHAQPKHIEQYWVHLGEQLRFGQPCDLLRLPREHLTRAWPQTV
                     QSTAQVACQQARQQLEQHGTRASLLDTLQRWLLRNVRQAPNLEHAAAALGMSPTTLKR
                     KLHKHGTSYQEQHDRVRLLVALYLYQIKGYSNDEVASHLRFHDATNFRRSFKRWTGLA
                     PSALRQLLGG"
     gene            complement(2634..>3090)
                     /locus_tag="VLF16_12825"
     CDS             complement(2634..>3090)
                     /locus_tag="VLF16_12825"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017337896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HSX71805.1"
                     /translation="LGAADYLRRQLELGLQESVREQQPLSLVMIDLDGFDAINQRYGH
                     AEGDRVLQAVPQLLLLNLRQQDLLCRLAGDRFVAVLPNTGETVAAQIARELAEAVRHL
                     AHRSRQHGERIQLRASVAQVMALQESAESLLQRLNLALAKAKQPLALSA"
BASE COUNT          390 a         1054 c         1124 g          522 t
ORIGIN      
        1 aaagggcagc gacagcagcc cgccggtggg caggttgccg tcgtacacgc cgatctcgct
       61 ttcccccgat tgcaccgcgt gcagcacctc ggcgctcttc tgctcgacca actgcaggtc
      121 cacttccggg tagtcggcga ggaacggccc cagggtcgcc ggcagaaagg tgctgttggc
      181 caccgtggtg gcggacaggc gcagggtgat gcggtgctgc ccgccgagct ccttcagggt
      241 ttgcttcagc cgctccgcct cgctcagcac gctgcgcgcc cgctccagca ctaggcgtcc
      301 ggccggcgtc ggcgtcatgc cggcggcggt gcgggtgaac agggccaggc cgcagcgttc
      361 ttcgaacaga cgcaggcggg tgctggcggc ggacaccgcc accgggatgc tcgccgcggc
      421 cttgctcagg ctgccgctgc cggcgatggc ggccagcagg cgcaggtcgg ccaggtcgaa
      481 gtgcatgggt ttctcctttg gcgaaggctt ccttcggaaa aatgcgattc tagctcgcgg
      541 ctgttcgcgt cagaataaag cctttcctgc cttcgcgtgc tgccatgacc acctccctgt
      601 accagcgctg cctcgccgac ggccgcctgt tcgccgtgct ctcggcggcc ggcttcagcc
      661 tcaaggccat cttcgtcaag ctcgcctacg ccgccgggcc ggtggacgcc gtgaccctgc
      721 tggccatgcg catgggcctg gcgctgccgc tgttcctctg gctgctgtgg ctgagccgtg
      781 gccagagcgg cgcgccgatg ggcctgtccg gcgtgctgcg ggtgctgctg ctgggcatgc
      841 tcggctacta cctctccagc ctgttcgact tctacggcct ggaatacatc agcgccggcc
      901 tggagaggct gatcctgttc acctacccga ccctggtgct gctgctgcag gcggtggccc
      961 tgcgcgagcg gccgagccgg cgcacgctgc tggccatggg catctgctac ctcggcctgg
     1021 gcatcgcctt cgtgcacgac atcggcgcgg cgagcgccgg cagccaggtg ctgctgggcg
     1081 ccgcctgggt gttcgccagc gcggtgacct acgccctgta ctacttcggc accggggtga
     1141 tggtgcagcg catcggctcc atgcgcctgg ccggcctggc tggcgcggct tcttcgttga
     1201 tggtgctggc gcactacggc gtgagcggcc agctcggtgt cgagcaggtc cgtctggcga
     1261 gcctgtcggg cgagatctgg ctgtacgccg cactgatggc gctgtgctcg accgtgctgc
     1321 cggtctactg gatggccctg gccgtgcagc gcatgggcgc ggcgcagacc gcggccatcg
     1381 gcaacctcgg cccggtgctg accatcgtcg cctcctgggc ggtgctcagc gaggcgatct
     1441 cggtctacca actggcgggg ctggcgctgg tgatgttcgg catctcgcgg ctcaagccgt
     1501 ccgccgcccg ggccgcgtcg agcgaatccc gcgtgccgtt cggtcagcgg ctggcctccc
     1561 tgttcggacg ctcgccggcc cgccagcgtc cgggcgacta accgcccagc aactgacgca
     1621 gggcgctggg cgcaagaccg gtccagcgct tgaacgagcg gcggaagttg gtggcgtcgt
     1681 ggaagcgcag gtggctggcc acctcatcgt tgctgtagcc cttgatctgg tacaggtaca
     1741 gcgccaccag caggcgcacc cggtcgtgct gctcctggta gctggtgccg tgcttgtgca
     1801 gcttgcgctt gagggtggtc gggctcatgc ccagggcggc cgcggcgtgc tcaaggttcg
     1861 gcgcctggcg cacgttgcgc agcagccagc gctgcagggt gtcgagcagg ctggcgcggg
     1921 tgccgtgttg ctccagctgc tggcgcgcct gctggcaggc cacctgcgcg gtgctctgca
     1981 cggtctgcgg ccaggcgcgg gtcaggtgct cgcggggcag gcgcagcagg tcgcagggct
     2041 ggccgaagcg cagctgttcg cccaggtgca cccagtactg ctcgatgtgt ttcggctggg
     2101 catgacggaa gtggaactgc cagggcagcg cctcgccgcc caggcgtcgg ctcatggcca
     2161 ccaccgcggt catctgtgcc tccagcaaaa agcgctgctg cgcgccgacg ccgcagctgt
     2221 ccagccagta taggtaggcg tgctgctcat ccagcagcag gcgcgggctg agcagcggcg
     2281 agagcagggc gcgcagctcg ccgagcagct caagcgcctg ctgcaggttg ttggccagcg
     2341 ccagcgcctg gctggcggcg ccgtggtggc cgggcagcag gcgctggccg aacaggaagc
     2401 tggtgtcgtc ggcgtcgagc aggcgctggg cgttgtcgat cagggtgagg aactgcgccg
     2461 ggctgatcag gctctcggcc ttgggcacgt cctcgaggaa caggccggtg ccgcgcagca
     2521 ggcggtggct gtcgatgccg cgcgacaggc acagctcgat caggctggcc ggctgctggt
     2581 gcgcggcgat gcagcggctg tcgttctcgt accaggggca gtgcagggcc atgtcaggcg
     2641 ctcagcgcca gcggctgctt ggccttggcc agcgccaggt tgaggcgctg caacaggctc
     2701 tcggcgctct cctgcagggc catcacctgg gccacgctgg cgcgcagctg aatgcgctcg
     2761 ccgtgctggc gcgaacggtg cgccaggtgg cgcaccgcct ccgccagctc ccgggcgatc
     2821 tgcgccgcca ccgtctcccc ggtgttgggc agcacggcga cgaagcggtc gccggccagg
     2881 cggcacagca ggtcctgctg gcgcaaattg agcagcagca gctgcggcac ggcctgcagc
     2941 acgcggtcgc cctcggcatg gccgtagcgc tggttgatcg catcgaagcc gtccaggtcg
     3001 atcatcacca gcgacagcgg ctgctgctcg cgcacgctct cctgcaggcc cagctccagc
     3061 tggcggcgca ggtagtcggc ggcgcccagc
//
LOCUS       DATIHC010000771         2944 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4457, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000771 DATIHC010000000
VERSION     DATIHC010000771.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2944)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2944)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2944
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4457"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1576
                     /gene="secD"
                     /locus_tag="VLF16_12830"
     CDS             <1..1576
                     /gene="secD"
                     /locus_tag="VLF16_12830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HSX71806.1"
                     /translation="GDDYVVALNLAPTTPEWLRNLGAGPMKLGLDLSGGVHFLLEVDM
                     DKAMDARLKVYESEIKSLLRKERVRYRSLPQQDGAIQLGFADTETLEKAQDLVRKNFT
                     DFAMTSAERAEQQVLRLALTEAKRAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGA
                     NRIVVELPGVQDTAEAKRILGKTANLEFRLQAEPDAARASTESFEFRQEGRPAVALER
                     SLIITGDQVTDAQASYDENGRPQVNIRLDGHGGELMNRATRNNVGRSMAVIFIEQKPL
                     TRYVKQMVDGVEKEVAVPSFKEEKKIISLATIQSALGSQFRITGLDGQGESSELALLL
                     RAGGLAAPMYFAEERTIGPSLGADNIAKGIDASIWGMIFVSIFIIIIYRFFGVLATVA
                     LGFNMVLLLALMSALSATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMSIQRA
                     IHEGFDRAYSAILDANLTTLLVGGILFAMGSGPVKGFAVTMSLGILTSMFTAIMVTRA
                     MVNLIFGGRDLKKLWI"
     gene            1586..2500
                     /gene="secF"
                     /locus_tag="VLF16_12835"
     CDS             1586..2500
                     /gene="secF"
                     /locus_tag="VLF16_12835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004878723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HSX71807.1"
                     /translation="MKLGTINFMGVRNFAFALTMLLTVVALGSWFFKGLNFGLDFTGG
                     SQIELSYDQAADLGEVREQLAQAGYPDAVVQNFGATTDVVVRLQGDDPQLGNKVAAAL
                     QAANADNPPSVEKVEFVGPAVGEELRDQGGLGMLLALGGILIYVAFRFQWKFALGAIV
                     SLVHDVVVTMGILSFFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRKATL
                     IENINISTTQTLLRTMATSVSTLLAIVALLVFAGDNLWGFSIALFVGVLAGTYSSIYI
                     ANVVLIWLNLTTEDLIPPAVTEEVDERP"
     gene            2679..>2944
                     /locus_tag="VLF16_12840"
     CDS             2679..>2944
                     /locus_tag="VLF16_12840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71808.1"
                     /translation="MNKSMIVGAVLGAVGVTAGGAVATYSLVGGPQYAEVLAVKPVNE
                     TVKTPREVCKDVTVTRQRPVKDQHQIAGTAIGAVVGGLLGNQVGG"
BASE COUNT          503 a          950 c          958 g          533 t
ORIGIN      
        1 tggcgacgac tacgtcgtgg ccctgaacct ggcgccgacc acccccgagt ggctgcgcaa
       61 tctgggcgcc ggcccgatga agctgggtct ggacctgtcc ggtggtgtgc acttcctgct
      121 ggaagtggac atggacaagg ccatggatgc ccgcctcaag gtttacgaga gcgaaatcaa
      181 gagcctgctg cgcaaggagc gcgtgcgcta tcgcagcctg ccgcagcagg acggcgcgat
      241 ccagctgggc ttcgccgaca ccgagaccct ggagaaggcc caggatctgg tgcgcaagaa
      301 cttcaccgac ttcgccatga cctcggcgga gcgcgccgag cagcaggtgc tgcgtctggc
      361 cctgaccgag gccaagcgcg cggagatccg cgagtattcg atcaagcaga acctcaccac
      421 cgtgcgcaac cgggtcaacg agctgggcgt cgccgagccg ctggtccagc gccagggtgc
      481 caatcgcatc gtggtcgagc tgccgggcgt gcaggacacc gcggaggcca agcgcatcct
      541 cggcaagacc gccaacctgg agttccgcct gcaggccgag ccggacgcgg cgcgtgcctc
      601 caccgaatcc ttcgagttcc gccaggaggg ccgccccgcc gtcgcgctgg agcgcagcct
      661 gatcatcacc ggcgaccagg tcaccgatgc ccaggccagc tacgacgaga acggccgtcc
      721 gcaggtgaac atccgtctcg atggccacgg cggcgagctg atgaaccgcg cgacccgcaa
      781 taacgtcggt cgcagcatgg cggtgatctt catcgagcag aagccgctga cccgctacgt
      841 caagcagatg gtcgacggcg tcgagaagga agtcgcggta ccgtccttca aggaagagaa
      901 gaagatcatc agcctggcca ccatccagtc ggcgctgggc agccagttcc gcatcaccgg
      961 cctggatggc cagggcgaat cctccgagct ggccctgctg ctgcgcgccg gtggcctggc
     1021 cgcgccgatg tatttcgccg aggagcgcac catcggtccg agcctgggtg ccgacaacat
     1081 cgccaagggt atcgatgcct ccatctgggg catgatcttc gtgtcgatct tcatcatcat
     1141 catctaccgc ttcttcggcg tgctggcgac cgtggccctg ggcttcaaca tggtgctgct
     1201 gctggcgctg atgtcggcgc tgagcgcgac cctgaccctg ccgggcattg ccggtatcgt
     1261 gctgacgatg ggtatggcgg tggacgccaa cgtgctgatc ttctcgcgta tccgcgagga
     1321 gatcgccaac ggcatgtcca tccagcgcgc catccatgag ggcttcgatc gtgcctactc
     1381 ggcgatcctc gacgccaacc tgaccacgct tctggtcggc ggcatcctgt tcgcgatggg
     1441 cagcgggccg gtcaagggct tcgccgtgac catgtcgctg ggcatcctca cctcgatgtt
     1501 caccgccatc atggtgaccc gtgcgatggt caacctgatc ttcggcgggc gcgacctcaa
     1561 gaagctgtgg atttaaggag cagccatgaa actcggtact atcaatttca tgggtgtgcg
     1621 caatttcgcg ttcgccctga ccatgctcct gaccgtcgtc gcccttggaa gctggttctt
     1681 caaggggctt aacttcggtc tcgatttcac cggcggcagc cagatcgagc tgagctacga
     1741 ccaggcggcc gatctcggcg aggtgcgcga gcagctggcc caggccggct atcccgacgc
     1801 cgtggtgcag aacttcggtg ccaccaccga tgtggtggtg cgcctgcagg gtgacgatcc
     1861 gcagctgggc aacaaggtgg ccgccgcgct gcaggccgcc aacgccgaca atcctccgag
     1921 tgtggagaag gtcgagttcg tcggcccggc ggtaggcgag gagctgcgtg accaaggtgg
     1981 tctgggcatg ctgctggccc tgggcggcat cctcatctac gtggccttcc gcttccagtg
     2041 gaagttcgcc ctcggtgcca tcgtctcgct ggtgcacgac gtggtggtca ccatgggcat
     2101 cctctcgttc ttccagatca ccttcgacct gacggtgctg gcggcggtgc tggcgatcat
     2161 cggctactcg ctgaacgaca ccatcgtggt gttcgaccgg gtgcgcgaga acttccgcgt
     2221 gctgcgcaag gcgacgctga tcgagaacat caacatctcg accacgcaga ccctgctgcg
     2281 caccatggcg acctccgtgt ccacgctgct ggcgatcgtt gccctgctgg tgttcgccgg
     2341 tgacaacctg tggggtttct ccatcgccct gttcgtcggt gtgctggccg gtacctactc
     2401 gtcgatctat atcgccaacg tggtgttgat ctggctgaac ctgaccaccg aggacctgat
     2461 tccgccggcg gtcaccgagg aagtggacga gcgtccctga cctcttgtgt ctaccgcaaa
     2521 aagcccggcc ctgagccggg cttttgcttt tcggagatgt gcgtttcgtc gcagttgccg
     2581 ctgcgctgac cagcggggcg ggaacttggc tggcgccgac tcatccaagg cagggaagag
     2641 ggcacgaacg cccggccacg aagtctctgg aggaccccat gaacaagtcg atgatcgtag
     2701 gtgcagtgct gggcgcggtt ggcgtcaccg ccggcggcgc cgtcgccacc tatagcctgg
     2761 tgggcggccc ccagtacgcc gaagtactgg ccgtgaagcc ggtgaacgaa accgtcaaga
     2821 cgccgcgtga agtctgcaag gacgtgaccg tgacccgtca gcgtccggtc aaggatcagc
     2881 accagattgc cggtaccgcc atcggtgccg tcgtcggcgg tctgctgggc aaccaggtcg
     2941 gcgg
//
LOCUS       DATIHC010000772         2581 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_6925, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000772 DATIHC010000000
VERSION     DATIHC010000772.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2581
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6925"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..545
                     /locus_tag="VLF16_12845"
     CDS             <1..545
                     /locus_tag="VLF16_12845"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003158519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HSX71809.1"
                     /translation="SQRLEKIAANLGSQVNGTPVTYKVYLTDEVNAWAMANGCVRVYS
                     GLMDLMNDNEVEGVLGHEMGHVALGHTKKAMQAAYATSVARGAAASSGNGAVSALSSS
                     QLGDLGEELVNAQFSQSQESAADDFSFDLLKQRGIPLEGLASAFDKLAQLGGGDSSMF
                     DSHPGSADRAAHIRQRIAAD"
     gene            597..995
                     /locus_tag="VLF16_12850"
     CDS             597..995
                     /locus_tag="VLF16_12850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017360984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
                     /protein_id="HSX71810.1"
                     /translation="MLRLRILSICFLPPLALQVGAVDMNDISTRYEDCIQTNPQKLSA
                     AAVCAEGASESAKKEMNRVDQRLYLKLQKTSQEDAQQLENSQKAWLIYRNAHCGLLGK
                     YDGSPMYTICPMKLNIDRVAELQFLLGDGG"
     gene            complement(992..2185)
                     /locus_tag="VLF16_12855"
     CDS             complement(992..2185)
                     /locus_tag="VLF16_12855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017360985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0036297 - interstrand cross-link repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crosslink repair DNA glycosylase YcaQ family
                     protein"
                     /protein_id="HSX71811.1"
                     /translation="MSLSLSLAEARRLALAAQGFARAPRGAIGHRQLRAQIERLGVLQ
                     IDSVNALVRSHYLPAFSRLGHYDPALLDDLAWGKRKRRGLFEYWGHEASLLPLELYPL
                     LRWRMRRAADGRGIYRQLAEFGRQRQDVIQRVLQAVREQGALGAGSLSTRTERAGPWW
                     DWSAEKRALEWLFAAGQVTVAGRRSFERLYDLPERVIPAAQLDHPEFDEAEAQRQLLL
                     RSAGALGVATERDLRDYFRLDAFDAKARIAELVEAGELQPVAVQGWKQPGYCRGEPSV
                     PRRVRASALLSPFDSLVWERERTERLFGFRYRLEIYTPPDKRVYGYYVLPFLHHERLL
                     ARVDLRSERAHGRLAVHAVHLEEAVLNEEALHALAEELRALAQWLGLEEVWFGPAAAC
                     HGLKP"
     gene            complement(2212..>2581)
                     /locus_tag="VLF16_12860"
     CDS             complement(2212..>2581)
                     /locus_tag="VLF16_12860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3291 domain-containing protein"
                     /protein_id="HSX71812.1"
                     /translation="INALAEASPGYVWRLQDEAGDATAIRPFGDEVLVNMSVWTDVQS
                     LSDYVYTSAHTEMLKRRREWFDKVEQAHQVLWWVPAGHRPSVAEAAERLAHLREHGAT
                     AHAFTFRRAFAAPDALVEHC"
BASE COUNT          467 a          900 c          835 g          379 t
ORIGIN      
        1 acagccagcg cctggagaag atcgccgcca acctcggcag ccaggtcaac ggcactccgg
       61 tcacctacaa ggtctacctg accgacgagg tcaacgcctg ggccatggcc aacggctgcg
      121 tgcgcgtgta cagcggcctg atggacctga tgaacgacaa cgaagtggaa ggcgtgctcg
      181 gccacgagat gggccacgtt gccctcggcc acaccaagaa ggccatgcag gccgcctacg
      241 ccacctccgt ggcacgcggc gcggcagcct cctcgggcaa cggcgcagtc tcggcgctgt
      301 ccagctcgca gctgggcgac ctcggcgagg aactggtcaa cgcgcagttc tcccagtccc
      361 aggaaagcgc cgccgacgac ttttccttcg acctgctgaa gcagcgcggc atcccgctgg
      421 aaggcctggc cagcgccttc gacaaactgg cccaactggg cggcggcgac agcagcatgt
      481 tcgattccca cccgggctcg gccgatcgcg ccgcgcatat ccgccagcgc atcgccgccg
      541 actaagcctc aaaggggccg cacatagcgg ccccttctgc tttgaggagt cctctcatgc
      601 tcaggctgcg catcctatcg atctgctttc tgccgccgct tgccttacag gtcggagcag
      661 tcgatatgaa tgacatttcc actcgctacg aagactgtat ccagactaat ccacagaaac
      721 ttagcgcagc ggcagtgtgt gccgaaggcg cttcggagtc ggcaaagaag gagatgaacc
      781 gcgtcgacca gcgcctctat ctcaagttgc agaagacctc acaagaagac gcccagcaac
      841 tcgaaaactc gcagaaggca tggctcatct atcgcaacgc gcattgcggc ctgctgggca
      901 aatatgacgg ctcgccgatg tacaccatct gcccgatgaa actgaacatc gacagggtag
      961 ccgagttgca attcctgctc ggcgatggcg gctagggctt aagcccgtgg catgctgccg
     1021 cgggcccaaa ccagacctcc tccagcccca gccactgcgc cagcgcgcgc agctcctcgg
     1081 ccagggcgtg caacgcctcc tcgttcagca ccgcctcttc cagatgcacg gcatgcaccg
     1141 ccaggcgccc gtgcgcgcgc tcgctgcgca ggtcgactcg cgccagcagg cgctcgtggt
     1201 gcaggaacgg cagcacgtag tagccataca cgcgcttgtc cggcggcgtg tagatctcca
     1261 ggcgatagcg aaagccgaac agccgctcgg tgcgttcgcg ttcccagacc agcgagtcga
     1321 agggcgacag cagcgcgctg gccctgactc gtcgcggaac gctcggctca ccccggcagt
     1381 agcccggctg tttccaaccc tgcaccgcga ccggctgcag ttcgccggcc tcgaccagtt
     1441 cggcgatgcg cgccttggca tcaaaggcgt ccaggcggaa gtagtcgcgc aagtcgcgct
     1501 cggtggccac gcccagagcg ccggccgagc gcaacaatag ctggcgttgg gcctcggcct
     1561 cgtcgaactc gggatggtcg agctgggcgg cggggatcac ccgttccggc agatcgtaga
     1621 ggcgctcgaa gctacgacgc ccagccacgg tcacctggcc cgcggcgaac agccactcca
     1681 gcgcacgctt ctccgcgctc cagtcccacc aggggccggc gcgctcggtg cgggtactga
     1741 ggctgccggc gccgagcgcg ccctgttcgc gcaccgcctg cagtacgcgc tggatcacgt
     1801 cctgccgctg gcggccgaac tcggccagct ggcggtagat gccccgcccg tccgccgccc
     1861 ggcgcatacg ccagcgcagc agcggataca gctccagcgg cagcagcgag gcctcgtggc
     1921 cccagtattc gaacaggccg cggcgcttcc gcttgcccca ggccagatcg tccagcagcg
     1981 ccggatcgta atgaccgagg cgtgagaacg ccggcaggta gtgcgagcgc accagggcat
     2041 tgaccgagtc gatctgcagc acgccgaggc gctcaatctg tgcgcgcagc tggcgatggc
     2101 cgatggcgcc gcgcggcgcg cgggcgaagc cctgagcggc cagtgctagg cgacgagctt
     2161 cggcaagcga gagggagaga ctcatggcgg ccaagcctag caggccggcc gctagcagtg
     2221 ctcgacgagc gcgtccggtg cggcgaaagc gcggcggaag gtgaaggcgt gggccgtggc
     2281 gccatgctcg cgcaggtgcg ccaggcgctc ggccgcctcc gccacactcg gccggtgccc
     2341 cgccggcacc caccagagca cctgatgcgc ctgttcgacc ttgtcgaacc attcgcggcg
     2401 gcgcttgagc atctcggtat gggcggaggt gtagacgtag tcactgagcg actgcacatc
     2461 ggtccatacc gacatgttga ccagcacctc gtcgccgaaa gggcgaatgg cggtggcgtc
     2521 gccggcttcg tcctgcaggc gccagacata gccgggcgac gcctcggcca gggcgttgat
     2581 a
//
LOCUS       DATIHC010000773         2078 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_9329, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000773 DATIHC010000000
VERSION     DATIHC010000773.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2078
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9329"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..73
                     /gene="rpmE"
                     /locus_tag="VLF16_12865"
     CDS             <1..73
                     /gene="rpmE"
                     /locus_tag="VLF16_12865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012703015.1"
                     /note="RpmE; there appears to be two types of ribosomal
                     proteins L31 in bacterial genomes; some contain a CxxC
                     motif while others do not; Bacillus subtilis has both
                     types; the proteins in this cluster have the CXXC motif;
                     RpmE is found in exponentially growing Bacilli while YtiA
                     was found after exponential growth; expression of ytiA is
                     controlled by a zinc-specific transcriptional repressor;
                     RpmE contains one zinc ion and a CxxC motif is responsible
                     for this binding; forms an RNP particle along with
                     proteins L5, L18, and L25 and 5S rRNA; found crosslinked
                     to L2 and L25 and EF-G; may be near the
                     peptidyltransferase site of the 50S ribosome; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HSX71813.1"
                     /translation="QKMLDTGGRIDRFKQRFGVFGSK"
     gene            82..882
                     /locus_tag="VLF16_12870"
     CDS             82..882
                     /locus_tag="VLF16_12870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017360525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HSX71814.1"
                     /translation="MVQATLLKKASLVGAFFVSVCLVSPAQAFCPLVDDLAPQRVAKV
                     VDGDTLRLADGRSVRLIGINAPERARDGRPAEPFAEAARKRLQALVAADGGRIGLRLG
                     RRPRDHYGRTLAHVYGRQGQNLEAQLLAEGLGFRVAFEPATGLERCQREAERAAREER
                     IGLWQQARVVGPFDLRRGGFALVGGRVEKVQRNRGGLWIEMDGPLVLRVEPKLLRHFD
                     AAALQRLAGQRIEARGWVIDRSHRGGVKPGQARWMLSLTHEAMLEVIP"
     gene            879..>2078
                     /locus_tag="VLF16_12875"
     CDS             879..>2078
                     /locus_tag="VLF16_12875"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015475185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HSX71815.1"
                     /translation="MKLRLLLLLSVLAQLVGCAVNPATGRTDFVMMSEQQEIELGRNY
                     AEEIAKQYPRYADEKLQAYVQRVGERVARKSHRGNLDYRFTVVDSPDINAFAIPGGHI
                     YIHRGLMAYLGSEAELAAVLGHEVGHVTARHSVRQQSQSTAWNILGQAVAIGTGVGAA
                     GDVTNVLGSAFVRGYGRDMELEADGFGAQYLARSGYDPQAMIEVVKVLKNQEDFARDE
                     ALAKGQEIPPAGYHGLFDTHPDNDTRLRQVVASASPLVNGQGEVGREAYLTMIDGMPF
                     GDSAEAGVRRGQRFYHVGLDFTLAFPQGWGLVNRPDAVIVHSPDEQAFLVMSMQGLKA
                     QVDSQAFIRQSTGGWGLTGQESFKQDGLDVTTGVLPGNDARRVAVIVRDREAFIFIGA
                     VKGRASLE"
BASE COUNT          322 a          676 c          754 g          326 t
ORIGIN      
        1 gcagaagatg ctggataccg gcggccgtat cgaccgcttc aagcagcgtt tcggcgtgtt
       61 cggcagcaag taagccgaag ggtggtgcaa gccacactgc tgaaaaaggc gtccctggtg
      121 ggcgcctttt tcgtttctgt ctgcctggtt tccccggccc aggccttctg cccgctggtc
      181 gacgacctgg cgccacagcg cgtggccaag gtggtggacg gcgacaccct gcgtctggcc
      241 gatggtcgca gcgtgcgcct gatcggcatc aacgcgccgg agcgggcgcg cgacggtcgt
      301 ccggccgagc ccttcgccga ggcggcacgc aaacgtctgc aggcgctggt ggcggcagac
      361 ggtgggcgca tcggcctgcg tctggggcgc cggccgcgcg atcattacgg gcgcaccctc
      421 gcccacgtct atggccgcca ggggcagaac ctggaggcac agctgctggc agaggggctg
      481 ggctttcggg tggccttcga gcccgccacc ggtctcgagc gctgccagcg cgaggcggag
      541 cgggcggcgc gcgaggagcg catcggcctc tggcagcagg cccgggtcgt cggacccttc
      601 gatctgcgcc gcggcggatt cgccctggtc ggcggtcggg tcgagaaggt gcagcgcaac
      661 cgtggcggtc tgtggatcga gatggacggc ccgctggtgc tgcgcgtcga gccgaagttg
      721 ctccgtcact tcgatgctgc cgcgctgcag cgcctcgccg ggcagaggat agaggcgcgc
      781 ggctgggtca ttgaccggtc ccaccgcggc ggcgtaaaac cggggcaggc ccgctggatg
      841 ctgtcgctga cccacgaggc catgctcgag gtaataccat gaagttgcgt ctgctgttgc
      901 tgctgtccgt gctcgcccag cttgtcggct gcgccgtcaa tccggccacc gggcgcaccg
      961 acttcgtgat gatgagcgag cagcaggaga tcgagctggg gcgcaattac gccgaggaaa
     1021 tcgccaagca atacccgcgc tacgccgacg agaagctgca ggcgtacgtg cagcgagtcg
     1081 gcgagcgggt ggcgcgcaag agtcaccgcg gcaacctcga ctaccgcttc accgtggtcg
     1141 acagcccgga catcaacgcc ttcgccattc ccggcgggca catctatatc catcgcggcc
     1201 tgatggccta tctcggctcc gaggcggagc tggccgccgt gctcggccat gaggtggggc
     1261 atgtcaccgc gcggcacagc gtgcgccagc agagccagtc cacggcctgg aacatcctcg
     1321 gccaggcagt cgccattggc acgggcgtgg gcgccgccgg cgacgtcacc aatgtgctgg
     1381 gctcggcgtt cgtgcgcggc tatggccgcg acatggagct ggaggccgat ggcttcggcg
     1441 cccagtatct ggcgcgcagc ggttacgacc cgcaggcgat gatcgaagtg gtgaaggtcc
     1501 tgaagaacca ggaggacttc gcccgcgacg aggccctggc caaggggcag gaaataccgc
     1561 ccgcgggcta tcacggtctg ttcgataccc acccggacaa cgacacgcgc ctgcgccagg
     1621 tggtggcctc cgccagcccg ctggtcaatg gccagggcga ggtagggcgc gaggcctacc
     1681 tgacgatgat cgacggcatg cccttcggcg actcggccga ggctggcgtg cgccgcggcc
     1741 agcgcttcta ccatgtcggc ctggatttca ccctggcgtt ccctcagggc tgggggttgg
     1801 tcaaccgccc cgacgcggtc atcgtgcaca gcccggacga gcaggcgttc ctggtcatga
     1861 gcatgcaggg cctgaaggcg caggtcgatt cgcaggcctt catccgccag agcaccggcg
     1921 gctggggcct gaccgggcag gagagcttca agcaggatgg cctggacgtc accaccggcg
     1981 tgctgccggg caatgacgcc aggcgtgtgg cggtgatcgt gcgcgaccgc gaggccttca
     2041 tcttcatcgg ggcggtcaag gggcgggcgt cactggaa
//
LOCUS       DATIHC010000774         2574 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_44133, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000774 DATIHC010000000
VERSION     DATIHC010000774.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2574
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44133"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..450
                     /locus_tag="VLF16_12880"
     CDS             <1..450
                     /locus_tag="VLF16_12880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)(+) transhydrogenase"
                     /protein_id="HSX71816.1"
                     /translation="SLASAAYDQGRSAAGSAVENDSWRFVDDVPTGIYTIPEISSIGK
                     NERELTQAKIPYEVGKAFFKGMARAQISHEPVGMLKILFHRETLEILGVHCFGYQASE
                     IVHIGQAIMNQKGEANSIKYFVNTTFNYPTMAEAYRVAAFDGLNRLF"
     gene            complement(787..1506)
                     /locus_tag="VLF16_12885"
     CDS             complement(787..1506)
                     /locus_tag="VLF16_12885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012018142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008081 - phosphoric diester hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase family
                     protein"
                     /protein_id="HSX71817.1"
                     /translation="MTLIYGHRGAKGEAPENTLASFQRCLEHGVTRCELDLHLSRDGE
                     LMVIHDPTLKRTTGRRGKVVEHDAEELAALDARLGGPGWKTPCPIPKLETLFEQCPFE
                     HWQLEVKSASRVRAARTVLAIQALAERFGIKDKVTVTSSSREVLRALRRLTPELSRGL
                     VAEYNWLDPLKVAAHHECSMLALNWTLCTPERLLKAQKSGFHVSVWTVNDPALMRRLA
                     DFGVDSIITDFPGVAVDTLKR"
     gene            complement(1503..1802)
                     /locus_tag="VLF16_12890"
     CDS             complement(1503..1802)
                     /locus_tag="VLF16_12890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase"
                     /protein_id="HSX71818.1"
                     /translation="MRLVFSLLGALWLATPALAETLEIPIGQQGADVAGLPTLGESKR
                     SVLERFGLADEEHPPVGQPPITRWDYRTFSVYFEYDHVVNSVLHHQPRHPIEEQQ"
     gene            complement(1799..2374)
                     /locus_tag="VLF16_12895"
     CDS             complement(1799..2374)
                     /locus_tag="VLF16_12895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007943662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HSX71819.1"
                     /translation="MSNQDVDDRREYYRIEDTIALDFSLLAGAEAQASDPLHDSSPLF
                     NLLSDLHLLDFESQHLLRHISERDRTLANYLKVMNKRIDLIGQAMAQSLLREIGTPRQ
                     VSLSEGGVSFQHCQAVATGSHLAIKMVLMPQALGLLLRAQVVHCQAREDGRFEIGTEF
                     EALTDAQRQLLARHILQKQALERRIAKEQER"
     gene            2470..>2574
                     /locus_tag="VLF16_12900"
     CDS             2470..>2574
                     /locus_tag="VLF16_12900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71820.1"
                     /translation="MFRPLPFFIGVRYTRARRRSLFVSFISLTSIIGLA"
BASE COUNT          431 a          822 c          842 g          479 t
ORIGIN      
        1 agcctggcca gcgccgccta cgaccagggc cgctcggccg cgggcagtgc ggtggagaac
       61 gacagctggc gcttcgtcga cgacgtgccg accggcatct acaccattcc ggagatcagc
      121 tcgatcggca agaacgagcg ggagctgacc caggccaaga tcccctacga ggtcggcaag
      181 gcgttcttca agggcatggc ccgtgcgcag atttcccacg agccggtggg catgctgaag
      241 atcctgttcc accgcgaaac cctggagatc ctcggcgtgc attgcttcgg ctaccaggcc
      301 tcggagatcg tgcacatcgg ccaggcgatc atgaaccaga agggggaggc gaattcgatc
      361 aagtacttcg tcaacaccac cttcaactac ccgaccatgg ccgaggccta ccgggtggcg
      421 gcgttcgacg gtctcaaccg gcttttttga gcggctccga ccggtggcct gaaccggtcg
      481 ggggtgatcc cctcgacgac tcccgcagct ggcgctggcc gaaccgggag agcttctgac
      541 caggcgcgac gctgcgacga aaaaccggct cttgggccgg ttttttcatg cctctttccc
      601 gagagcgagg aggccgggcg agggtgtgcc tggcgatacc gaggtgctga tcttccctct
      661 ccctgacctt ctcccatgaa tgggagaggg aatatcccag tagctcgtag tccgtagccc
      721 gtagcccgga tgcaatccgg ggcggaactc tccctcatcg agtccgggtg ggacgggatg
      781 ccgtcgctac cgcttgagcg tatccaccgc cacaccgggg aagtcggtga tgatgctgtc
      841 tacgccgaag tctgccaggc ggcgcatcag ggccgggtcg ttgaccgtcc acacggacac
      901 gtggaaaccg gatttctgcg ccttgagcag ccgctccggc gtgcacaggg tccagttcag
      961 cgcaagcatc gagcactcgt ggtgagcggc gaccttgagc gggtccagcc agttgtactc
     1021 ggccaccaga ccacgcgaca gttccggagt gagccggcgc agcgcgcgca aaacctcgcg
     1081 cgagctgctg gtgacggtga ccttgtcctt gatgccgaag cgttcggcca gtgcctggat
     1141 ggccagtacg gtacgcgccg cccgcactcg cgaggcgctt ttgacctcca gctgccagtg
     1201 ctcgaagggg cactgctcga acagggtttc cagtttcggg atcgggcagg gcgtcttcca
     1261 gccggggccg cccaggcgtg cgtcgagcgc cgcgagctcc tccgcgtcgt gttccaccac
     1321 cttgccgcgg cggccggtgg tgcgcttgag ggtcgggtcg tgaatcacca tcagctcgcc
     1381 gtcgcgcgac aggtgcaggt ccagctcgca acgggtaacg ccatgttcga ggcagcgctg
     1441 aaagctggcg agggtgtttt ccggtgcttc gcccttggcg ccgcggtggc cgtaaatgag
     1501 ggtcactgtt gttcctcgat gggatggcgg ggctggtgat gcagcacgct gttcaccaca
     1561 tggtcgtatt cgaaatagac gctgaaggtg cggtagtccc agcgggtgat cggtggctgg
     1621 cccaccggcg gatgttcctc gtcggccagg ccgaagcgct ccagcaccga gcgcttggac
     1681 tcgcccagcg tgggcagtcc ggcgacatcg gcgccttgct ggccaatggg aatctcgagg
     1741 gtctcggcca gcgccggcgt cgccagccac agtgcgccga gcagggaaaa caccagtctc
     1801 atcgttcttg ctccttggcg atgcgtcgtt ccagggcctg cttctgcagg atgtggcgag
     1861 ccaggagctg acgctgggcg tccgtcagtg cctcgaattc ggtaccgatt tcgaagcggc
     1921 catcctcgcg cgcctggcaa tgcacgacct gagcccgcag caacaacccg agggcctgcg
     1981 gcatcagcac catcttgatc gccaggtggc tgccggtggc cacggcctgg cagtgctgga
     2041 agctcacgcc gccctcggaa agcgacacct ggcgcggcgt gccgatctcg cgcagcaggc
     2101 tttgcgccat ggcctggccg atcaggtcga tgcgcttgtt catcaccttt aggtaattgg
     2161 ccagggtgcg atcgcgctcg ctgatgtggc gcagcaggtg ctgcgactcg aaatccagca
     2221 ggtgcagatc gctgagcagg ttgaacagcg gcgagctgtc gtgaagcggg tcactggcct
     2281 gcgcctcggc tccggcgagc aggctgaaat ccagtgcgat cgtatcctcg atacggtagt
     2341 attcgcggcg atcatcgacg tcttgattcg acatggcgaa cccatggcag cagtggtggt
     2401 ctgagtgtaa agccgcgcgc caggccccgc cacaaggacg tttctccctt ccgccagcga
     2461 acctcattca tgttcagacc cctgccgttt ttcatcggcg tgcgttacac gcgggcccga
     2521 cgccgcagct tgttcgtctc cttcatctcc ctcacttcga tcatcggtct cgcc
//
LOCUS       DATIHC010000775         2205 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_9331, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000775 DATIHC010000000
VERSION     DATIHC010000775.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2205)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2205)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2205
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9331"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1729
                     /locus_tag="VLF16_12905"
     CDS             <1..1729
                     /locus_tag="VLF16_12905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017676927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fatty acid cis/trans isomerase"
                     /protein_id="HSX71821.1"
                     /translation="VQEQALQPSAAELEQVKQWETFLNAPGARESLVNRWLFEHLFLA
                     HLYFEGGEPGHFFQLVRSRTPSGQPIDPIATRRPNEDPGSDFYYRLWPIQGVIVHKTH
                     ITYPLSAAKMARVRELFYAGDWAANAVPGYGAQRRANPFETFQAIPVQARYQFMLDNA
                     EYFVRTFIRGPVCRGQIATDVIRDNFWAVFQDPRHDLYVTDADYRAQATPLLAMPGQF
                     DEIGDLLGLWKAYRDKRNEYEDLRREAYADAPAPGWSSLWAGNDNALLSIFRHHDSAM
                     VRKGLIGEIPQTLWLMDYPLFERTYYQLVVNFDVFGNVAHQAQTRLYFDLIRNGAELN
                     FLRLLPPESRQLYLDDWYQNSGKLKMWLDYTTADVDTASGLNLPERGAKGAFAQALLA
                     RYADINARPDPINRCEGADCSRPGLPADLADAEQALSRLTGRPAGGLKAIDQLPEATL
                     LRIELANGKREIYSLLRNRAHSNVAFMTGESLRYQPGLDTLTVYPGVLTSYPNFMFSL
                     PADEVPAFVSALEQARDPAAFEQVVQRWGIRRSHPEFWRYFHDLSAYIRETEPTEAGV
                     LDMNRYQNL"
     gene            complement(1819..>2205)
                     /locus_tag="VLF16_12910"
     CDS             complement(1819..>2205)
                     /locus_tag="VLF16_12910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003459544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71822.1"
                     /translation="DLNVPGFDFFQLNTYYRETDGKRDGSGVWQITPAWSYTLPVGDS
                     DLVIDGFMDWVVDNDDSYHANLHFNPQIKYDMAKAMGWGKRFYVGVEYDYWTDKYGID
                     DDGYVGDEILGGTDQSAISLLFKGHF"
BASE COUNT          370 a          751 c          718 g          366 t
ORIGIN      
        1 ggtacaggag caggcgctgc agccgtcggc cgccgagctg gagcaggtga agcagtggga
       61 gaccttcctc aacgcgcccg gcgcccgcga gagcctggtc aatcgctggc tgttcgagca
      121 tctgttcctc gcccacctgt atttcgaggg cggcgagccg gggcatttct tccagctggt
      181 gcgctcgcgc acgcccagcg gccagccgat cgaccccatc gccacgcgcc gccccaacga
      241 ggaccccggc agcgacttct attaccggct gtggccgatc cagggcgtga tagtgcacaa
      301 gacgcacatc acctatccgc tgagcgcggc gaagatggcg cgagtgcgcg agctgttcta
      361 tgccggcgac tgggcggcga acgccgtgcc cggctacggc gcccagcgcc gcgccaatcc
      421 ctttgagacg ttccaggcca ttccggtgca ggcgcgatac cagttcatgc tggataacgc
      481 tgaatacttc gtgcgcacct tcatccgcgg cccggtgtgc cgcgggcaga tcgccaccga
      541 cgtgatccgc gacaacttct gggcggtgtt ccaggacccg cggcacgacc tctacgtcac
      601 cgatgctgac taccgcgccc aagccacgcc gctgctggcc atgcccggcc agttcgacga
      661 gatcggcgac ctgctcggcc tgtggaaggc ctatcgggac aagcgcaacg aatacgagga
      721 cctgcgccgt gaggcttacg ccgacgcgcc tgcgccgggc tggtcgagcc tctgggccgg
      781 caacgacaac gcgctgctgt cgatcttccg tcaccacgac agcgccatgg tgcgcaaggg
      841 gctgatcggc gagattccgc agaccctgtg gctgatggac tatccgctgt tcgagcgcac
      901 ctactaccag ctggtggtca acttcgacgt gttcggcaat gtcgcccacc aggcgcagac
      961 ccgcctgtac ttcgacctga tccgcaacgg cgccgagctg aacttcctcc gcctgctgcc
     1021 gccggagtcg cgccagctct acctggacga ctggtaccag aacagcggca agctgaagat
     1081 gtggctggac tacacgacgg ccgatgtcga caccgccagc ggcctgaacc tgccggagcg
     1141 gggcgccaag ggcgcgttcg cccaggccct gctggcgcgt tacgcggata tcaatgcgcg
     1201 gcccgacccg atcaaccgct gcgagggcgc agattgctct cgacccgggc tgccggccga
     1261 cctcgccgat gccgagcagg cgctgagccg cctgaccggg cgcccggccg gggggctcaa
     1321 ggcgatcgac cagttgcccg aggcgaccct gttgcgcatc gagttggcca acggcaagcg
     1381 cgagatctac agcctgctgc gcaaccgcgc gcacagcaac gtggccttca tgaccggcga
     1441 atccctgcgc taccagccgg ggctggacac gctgacggtc tacccgggcg tgctgaccag
     1501 ctacccgaac ttcatgttca gcctgccggc cgacgaggtg ccggcgttcg tctcggccct
     1561 ggagcaggcc cgcgacccgg cggcgttcga gcaggtggtg cagcgctggg gcatccgccg
     1621 cagccacccc gagttctggc gctacttcca cgacctgtcg gcctacatcc gcgagaccga
     1681 gccgacggag gcgggcgtgc tggacatgaa tcgctaccag aacctctgat tgccgaacgc
     1741 cgtgcgtccg ccggaaggcg gcgcattacg aaaaagcccg ccgaagtggc gggctttttt
     1801 atgcgcgggg agccgggctt agaagtggcc cttgaacagc aggctgatgg cgctctggtc
     1861 ggtgccgccg agaatctcgt cgccgacgta gccgtcgtcg tcgataccgt acttgtcggt
     1921 ccagtagtcg tactcgacac ccacgtagaa gcgcttgccc cagcccatgg ccttggccat
     1981 gtcatacttg atctgcgggt tgaagtgcag gttggcgtgg tagctgtcat cgttgtccac
     2041 cacccagtcc atgaagccgt cgatcaccag gtccgaatcg cccacgggca gggtgtagct
     2101 ccaggccggg gtgatctgcc acacgccgct gccgtcgcgt ttgccgtcgg tttcgcggta
     2161 gtaggtgttg agctggaaga agtcgaagcc ggggacgttc aggtc
//
LOCUS       DATIHC010000776         3365 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_44140, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000776 DATIHC010000000
VERSION     DATIHC010000776.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3365
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44140"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..108)
                     /locus_tag="VLF16_12915"
     CDS             complement(<1..108)
                     /locus_tag="VLF16_12915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71823.1"
                     /translation="MSRVQLAIVGGGLVGASLALALQAGARARGWRIVLI"
     gene            complement(110..1444)
                     /gene="pepP"
                     /locus_tag="VLF16_12920"
     CDS             complement(110..1444)
                     /gene="pepP"
                     /locus_tag="VLF16_12920"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HSX71824.1"
                     /translation="MVSIPKAEYARRRKALMEQMEPNSIAILAAAPVYIRNRDVEHVY
                     RQDSDFQYLTGFPEPEAVLALIPGREHGEYVLFCRERDPERELWDGLRAGQDGAVAQY
                     GADDAFPIGDIDDILPGLIEGRERVYYAIGTHQEFDHRLMEWINVIRSKARQGAIPPN
                     EFVALDHLLHDMRLYKSAAEAKVMKEAAEISARAHIRAMQASRAGLFEYHLEAELDYE
                     FRKGGAKMPAYGSIVAAGRNACILHYRENDAPLKDGDLVLIDAGCEIDCYASDITRTF
                     PVSGTFSPEQKAIYELVLEANEEAFKHIAPGKHWNEAHEATVRVITAGLVELGLLEGD
                     VEQLIASEAYKPFYMHRAGHWLGMDVHDVGDYKVGGEWRVLEPGMAMTVEPGIYIAAD
                     NDKVARKWRGIGVRIEDDVLVTKTGCEVITGGVPKTVAEIEALMAAAREQAA"
     gene            complement(1454..2008)
                     /locus_tag="VLF16_12925"
     CDS             complement(1454..2008)
                     /locus_tag="VLF16_12925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014818649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YecA family protein"
                     /protein_id="HSX71825.1"
                     /translation="MSISNSPYTAFAALLASTGKPVSPAELHGLLVGRSCAGAGFEAE
                     SWVADASELLGGEPADNVRQALVGLQEMVKGELSGSDVTLVLLLPGDDAPLAERAKAL
                     GQWCQGFLDGFGMVLGNAALSAEAMEVLQDLSAIAQVQSALEESEDGESDYMEVMEYL
                     RVAPLLLFAECGKAAAPAPKPSLH"
     gene            2154..2363
                     /locus_tag="VLF16_12930"
     CDS             2154..2363
                     /locus_tag="VLF16_12930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003458652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02449 family protein"
                     /protein_id="HSX71826.1"
                     /translation="MEDAELQALSRKLEQLIQRVEQLKSQNRALLASEQAWREERAHL
                     IEKNEMARHKVEAMISRLKALEQDS"
     gene            2360..2674
                     /locus_tag="VLF16_12935"
     CDS             2360..2674
                     /locus_tag="VLF16_12935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013789616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HSX71827.1"
                     /translation="MTQSNTVTVHILDKEYCIACPADERANLESAARYLDGKMREIRS
                     GGKVIGADRIAVMAALNITHDLLHKQQRLDEEASSTRERVRDLLDRVDNALAADQDGQ
                     LL"
     gene            2708..2886
                     /gene="ssrS"
                     /locus_tag="VLF16_12940"
     ncRNA           2708..2886
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="VLF16_12940"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            2895..>3365
                     /locus_tag="VLF16_12945"
     CDS             2895..>3365
                     /locus_tag="VLF16_12945"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017244162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HSX71828.1"
                     /translation="MILAGDLSRAALRRQLRQARRTLSPQQQKRAARDLYRQLAQHPL
                     FRRARHIALYLPNDGEIDPRPLLREAQRRGKATYLPVLSAWPRTRMRFQRVRMHEAMA
                     RNRFRIEEPLANPKRQRKVWALDLVLLPQVGFDAHGGRLGMGGGFYDRSLAYRHL"
BASE COUNT          548 a         1166 c         1101 g          550 t
ORIGIN      
        1 gatcagcacg atgcgccagc cacgcgcccg cgccccggcc tgcagggcca gcgccaggct
       61 ggcgccgacg agtccaccgc cgacgatggc gagctgcacg cggctcaact caggcggcct
      121 gctcgcgggc ggcggccatc agcgcctcga tctcggcgac cgtcttcggc acgccgccgg
      181 tgatgacttc gcagccggtc ttggtcacca gcacgtcatc ctcgatgcgc acgccgatgc
      241 cgcgccactt cctggcgacc ttgtcgttgt ccgcggcgat gtagatgccc ggctcgacgg
      301 tcatggccat gcccggctcg agcacgcgcc actcgccgcc gaccttgtag tcgccgacgt
      361 cgtgcacatc catgcccagc cagtggccgg cgcggtgcat gtagaagggc ttgtaggcct
      421 cgctggcgat aagctgctcg acgtcgccct cgagcagacc cagctccacc aggccggcgg
      481 tgatgacccg cacggtggcc tcgtgggcct cgttccagtg cttgccgggg gcgatgtgct
      541 tgaacgcctc ctcgttggcc tcgagcacca gctcgtagat ggccttctgc tcgggcgaga
      601 acgtgccgct gaccgggaag gtgcgggtga tgtcgctggc gtagcagtcg atctcgcagc
      661 cggcgtcgat cagcaccagg tcgccatcct tcagcggcgc gtcgttctcg cggtaatgca
      721 ggatgcaggc attcctgccg gccgcgacga tgctgccgta ggccggcatc ttcgccccgc
      781 ccttgcggaa ttcgtagtcc agctcagcct cgagatggta ctcgaacagc ccggcgcggc
      841 tggcctgcat ggcgcggata tgcgcgcgcg cgctgatctc ggcggcctcc ttcatcacct
      901 tggcctcggc cgcgctcttg tataggcgca tgtcgtgcag caggtggtcg agggcgacga
      961 attcgttggg cggaatcgcc ccctggcgcg ccttggagcg gatcacgttg atccactcca
     1021 tcagccgatg atcgaactcc tgatgggtgc cgatggcgta gtagacgcgc tcgcgcccct
     1081 cgatcaggcc cggcaggatg tcgtcgatat cgccgatggg gaaggcatcg tcggcgccgt
     1141 actgggcgac ggcgccgtcc tggccggcgc gcaggccatc ccacagctcg cgctcggggt
     1201 cacgctcgcg gcagaacagc acgtattcgc cgtgctcgcg gccggggatc agggccagca
     1261 ccgcctccgg ctcgggaaag ccggtgaggt actggaaatc gctgtcctgg cggtacacgt
     1321 gctcgacgtc gcggttgcgg atatacaccg gcgccgcggc caggatggcg atgctgttgg
     1381 gttccatctg ctccatcagc gccttgcgcc ggcgggcgta ttccgctttc gggatgctga
     1441 ccatatctgg accttagtgc agggaaggtt tgggcgcggg agcggcggcc ttgccgcatt
     1501 cggcgaacag cagcagcggc gccacgcgca ggtattccat cacttccata tagtcgctct
     1561 cgccgtcctc ggactcctcc agcgcgctct gcacctgggc gatggcggaa agatcctgca
     1621 gcacttccat ggcctcggcg ctcagcgcgg cattgccgag gaccatgccg aagccgtcga
     1681 ggaagccctg gcaccactgc cccagcgcct tggcccgctc ggccagcggc gcgtcgtcgc
     1741 cgggcagcag caggaccagg gtgacgtcgc tgccggagag ttcgcccttg accatctcct
     1801 gcaggccgac cagcgcctgg cgcacgttgt cggccggctc gccgccgagc agttcgctgg
     1861 cgtccgcgac ccaggactcg gcctcgaagc cagccccggc gcagctgcgg ccgaccagca
     1921 ggccgtgcag ctcggcgggt gaaacgggtt tgccggtgct cgccaggagg gcggcgaagg
     1981 cggtgtaggg agagttcgaa atggacatgg caactaggcg ctgaaccgcg ctatctctag
     2041 aatggaggcc ccgtatccta gcaccggcgg acgcggccaa gccatcgaag ccgccgtcgc
     2101 cgccacgccc cgcatccttt atagtgcagc cactcatagc cttggtggag cccatggaag
     2161 acgccgaact gcaagccctg tcgcgcaagc tggaacagct gatccagcgc gtcgagcagc
     2221 tgaagtcgca gaaccgtgcc ctgctggcca gtgagcaggc ctggcgcgag gaacgcgccc
     2281 atctgatcga aaagaacgaa atggcccggc ataaggtcga agcgatgatt tcgcgcctga
     2341 aagccctgga gcaggactca tgacccagtc gaacaccgta accgtgcaca tcctcgacaa
     2401 ggaatactgc atcgcctgcc ccgcagacga gcgcgccaac ctggagagcg ccgcacgcta
     2461 cctcgacggc aagatgcgcg agatccgctc cggcggcaaa gtcattggcg ccgaccgcat
     2521 cgccgtgatg gccgcgctga acatcaccca cgatctgctg cacaagcagc agcgcctgga
     2581 cgaggaagcg agctccaccc gcgagcgcgt gcgcgacctg ctggaccgtg tcgacaacgc
     2641 actcgccgcc gatcaggacg gccagttact ctgatcccag agcggttcga tggggtatac
     2701 tgcggccagc tccctggtgt gttggccagt cggtgatgtc cctgagccga tacgcacaac
     2761 cacgggggtt gccagtgggg ccggtgtgca tgtccgcctg acggaaagcc ttaacgccct
     2821 ctgcaacctc caccttgaac tttcgggttc aagggctaac ccgacagcgg cacgaccggg
     2881 gagtcttgaa ttccatgatc ctggctggtg atctctctcg cgccgccctg cgccgccagc
     2941 tccgccaggc tcgccgcacg ctttcccccc agcaacagaa gcgcgccgcc cgggacctgt
     3001 accggcagct ggcgcagcac ccgctgtttc gccgcgcacg ccacatcgcc ctgtatctgc
     3061 cgaacgacgg cgagatcgac ccgcgcccgc ttctgcgcga ggcccagcgt cgcggcaagg
     3121 ccacctacct gccggtgctc agcgcctggc cgcgcacccg aatgaggttc cagcgcgtgc
     3181 gcatgcacga agcgatggca cgcaaccgct ttcgcatcga ggaaccgctg gccaatccga
     3241 agcgccagcg caaggtctgg gcgctggatc tggtgctgct gccgcaggtg ggcttcgacg
     3301 cccacggcgg acgcctgggc atgggcgggg ggttttacga ccgcagtctc gcctatcggc
     3361 atttg
//
LOCUS       DATIHC010000777         1538 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_32678, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000777 DATIHC010000000
VERSION     DATIHC010000777.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1538
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32678"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..624
                     /locus_tag="VLF16_12950"
     CDS             <1..624
                     /locus_tag="VLF16_12950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX71829.1"
                     /translation="KLYQRFRQLDGSMTRQYGGLGIGLAICRQLVQLLGGTLQHQSQP
                     GHGSAFAITVELDLPAQLPTAAPTPGRSGGQPQRRAEQCTVLIVEDNPINQLVTRGML
                     LKLGYRVRTADNGAEALEVLGNEPVDAVLLDCQMPVMDGFATCRALRNLPGCADTPVL
                     AITAHSHSGDRERCLAAGMSDYMAKPVKFLELQSLLHDWVLCRASDA"
     gene            729..1364
                     /locus_tag="VLF16_12955"
     CDS             729..1364
                     /locus_tag="VLF16_12955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003240263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HSX71830.1"
                     /translation="MVYRVTAARLDRAQEQRERILACAHVRVAEGGFASLTMQALAED
                     AGIATGSLYRHFSGKGELAAEVFSNACRVEVDALAEVLRGPDNASARLAAGLEQFAAR
                     AWHSRRLAFALIAEPVEPEVDEQRLLFREAYAELFVDLLEEGVRAGEFRITQINLVAA
                     CLVGAIAEALVGPLSPPARAARDAGLPAADLATVSQTLVTFCLRAVGAPES"
     gene            1366..>1538
                     /locus_tag="VLF16_12960"
     CDS             1366..>1538
                     /locus_tag="VLF16_12960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA alkylation response protein"
                     /protein_id="HSX71831.1"
                     /translation="MSLQSFAETHEVFNQVPTLDGANLYRVDLPLQEWIRRYDGGWAE
                     DRLSAYGALAGGPL"
BASE COUNT          233 a          568 c          502 g          235 t
ORIGIN      
        1 aagctgtacc agcgcttccg ccagctcgac ggctccatga cccggcagta cggcggcctc
       61 ggcatcggcc tggcgatctg ccggcagctg gtgcagctgc tcggcggcac cctgcagcac
      121 cagtcccagc cgggacacgg cagcgccttc gccatcaccg tcgaactcga cctgccggcg
      181 cagctgccga ccgccgcgcc cacgccgggg cgtagtggtg gtcagcccca acgacgggcc
      241 gagcagtgca cggtgctgat cgtcgaggac aacccgatca accagctggt gacccgcggc
      301 atgctgctca agctcggcta ccgggtgcgt accgccgaca acggcgccga agccctggag
      361 gtgctgggca acgagccggt cgacgcggtg ctgctggact gccagatgcc ggtcatggac
      421 ggcttcgcca cctgccgcgc cctgcgcaac ctccccggct gcgccgacac gccggtactg
      481 gcgatcaccg cccacagcca cagcggcgac cgcgaacgct gtctggccgc cggcatgagc
      541 gactatatgg ccaagccggt gaagttcctc gagctgcaat cgctgctgca cgactgggtg
      601 ctgtgtcgcg cgtctgacgc ctgatgtcgg cgtgcaacgc ttcggccgga caaatggccg
      661 aatcgtcgtt tccgccaagc tgtgaatcat gattcactga gccgaattca tgaacacgga
      721 ttcagctcat ggtctaccgc gtcaccgccg cccgcctcga tcgcgcccag gaacagcgcg
      781 agcgcatcct cgcctgcgcc cacgtccgcg tcgccgaagg tggcttcgcc agcctgacca
      841 tgcaggccct ggccgaagac gccggcatcg ccaccggcag cctgtatcgc catttcagcg
      901 gcaagggtga gctggccgcc gaggtcttca gcaatgcctg ccgggtggag gtcgatgctc
      961 tcgccgaagt gctgcgcggg cccgacaacg cgtccgcccg tttggccgct ggcctggagc
     1021 agttcgccgc tcgcgcctgg cacagccgac gcctggcctt cgcgctgatc gccgagccgg
     1081 tggagccgga ggtggatgag cagcgcctgc tgttccgcga agcctatgcc gagctgttcg
     1141 tcgacctgct cgaagagggc gtgcgcgccg gcgaattccg catcacccag atcaacctgg
     1201 tcgccgcctg cctggtcggc gccatcgccg aggccctggt cggaccgctc tcgccaccgg
     1261 cccgcgcggc ccgcgacgcc ggcctgccgg cggcggacct ggccaccgtc agccaaaccc
     1321 tggtcacctt ctgcctgcgc gccgtcggcg ccccggagtc ctgagatgtc cctgcagtca
     1381 ttcgccgaaa cccacgaagt gttcaaccag gtgccgacgc tggacggcgc caatctgtac
     1441 cgcgtcgacc tgccgctgca ggagtggatc cgccgctacg acggtggctg ggccgaggac
     1501 aggctgagcg cctatggcgc cctggctggc ggcccgct
//
LOCUS       DATIHC010000778         1726 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17439, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000778 DATIHC010000000
VERSION     DATIHC010000778.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1726
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17439"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            66..1397
                     /locus_tag="VLF16_12965"
     CDS             66..1397
                     /locus_tag="VLF16_12965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014598103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HSX71832.1"
                     /translation="MTFSQWLLVLGTLLLVLALASAYLRLLPISSSVLYLLFGLGIGP
                     VGLGLWQEELGDISFWLEHLAEAAVLVSLFIGGLKLRLPLLAPEWRTAYLLAAPVLVG
                     TIFGLTLVGHFLFDLSWGLALLVAAILSPTDPVLASLVQVSGAGDVDRLRYSISGEAG
                     LNDGVAFPFVVAGIMLLQFDPTNSGDWLHWFAKDVLWAVPAALLLGYLLGRGTGRLVI
                     YLRARHNDTVVSANDFLALALIAISYACAETIGAWGFLATFCAGVGLRHAEVDTSGHD
                     AVPAEEAASGTLREEGQAAPVVEFGSNPGEHPQIAAGAVMADILSFGGLLERLLEVFM
                     VTLLGALLVQHWDWRALPLGLVLFCLVRPAMVVLLVRERLLPLRQRLFVGWFGIRGIG
                     SLYYLSYAVNHDLPPLSGREATDLVLSVVALSILLHGLTTQPLLGRYERRQ"
     gene            complement(1446..>1726)
                     /locus_tag="VLF16_12970"
     CDS             complement(1446..>1726)
                     /locus_tag="VLF16_12970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010799107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PA2169 family four-helix-bundle protein"
                     /protein_id="HSX71833.1"
                     /translation="VLELGGKPEDSTSVGGDMHRRWVDLKSLITGKSDEAILNECERG
                     EDVAKKHYAEALEKDLPPKVREVVQRQYAGVIRNHDQIKALRNVARAS"
BASE COUNT          207 a          609 c          567 g          343 t
ORIGIN      
        1 ctcacgctgg ccgcgttcgc ctggttgctg cgccagttca tgagcgccgc gggtctgacc
       61 acgccatgac cttcagccag tggctgctgg tgctcggcac cctgctactg gtgcttgccc
      121 tggcttcggc ttacctgcgt ctgctgccca tctcttcttc ggtgctctat ctgctgttcg
      181 gcctgggcat aggcccggtc ggcctgggcc tgtggcaaga ggaactcggc gacatcagct
      241 tctggctgga acacctggcg gaagcggcgg tgctggtctc gctgttcatc ggcggcctca
      301 agctgcgcct gccgctgctg gcgccggagt ggcgaaccgc ctacctgctg gccgcgccgg
      361 tgctggtcgg taccatcttc ggactgacgc tggtggggca tttcctgttc gacctgagct
      421 gggggctcgc gctgctggtg gccgccatcc tctcgcccac cgacccggtg ctcgccagcc
      481 tggtgcaggt cagcggcgcg ggcgatgtcg accgcctgcg ctatagcatc tccggcgagg
      541 ccggactgaa cgatggcgtt gcctttccct tcgtcgtcgc cggcatcatg ctgctgcagt
      601 tcgaccccac caacagcggc gactggctgc actggttcgc caaggacgtg ctctgggcgg
      661 tgccggccgc cctgctgctc ggctacctgc tggggcgcgg caccggccgc ctggtgatct
      721 atctgcgcgc ccggcacaac gacacggtgg tgagcgccaa cgacttcctc gccctggcgc
      781 tgatcgccat ctcctacgcc tgcgccgaga ccatcggcgc ctggggcttt ctcgccacct
      841 tctgcgccgg cgtgggcctg cgccatgccg aggtggacac cagcggccac gacgccgtgc
      901 ctgccgagga agccgcctcc ggcaccctgc gtgaggaagg ccaggccgcc ccggtggtgg
      961 agttcggcag caaccccggc gaacacccgc agatcgccgc gggcgcggtg atggccgaca
     1021 tcctctcctt cggcgggctg ctcgagcgcc tgctggaggt gttcatggtg acgttgctcg
     1081 gcgccctgct ggtccagcac tgggactggc gcgcactgcc gctgggtctc gtgctgttct
     1141 gcctagtgcg cccggccatg gtcgtgctgc tggtccgcga gcgcctgctg ccgctgcgcc
     1201 agcgcctctt cgttggctgg ttcggcattc gcggcatcgg cagcctgtat tacctcagct
     1261 atgcggtgaa ccacgacctg ccacccctga gcggccgcga ggccaccgac ctggtgctca
     1321 gcgtggtggc gctgagcatc ctgctgcacg gcctgaccac ccagccgctg cttggtcgct
     1381 acgaacggcg ccaataaaaa ggcccatgag ccgaagctca tgggccttgg ttaccgcggg
     1441 ttcgatcagc tggcgcgtgc gacgttgcgc agggccttga tctgatcgtg gttgcggatc
     1501 acaccggcgt actggcgctg taccacttcg cgcaccttcg gcggcagatc cttctccagg
     1561 gcctcggcat agtgcttctt ggccacgtct tcgccacgct cacactcgtt gaggatggcc
     1621 tcgtcgctct tgccggtgat cagcgacttg aggtcgaccc agcggcggtg catgtcgccg
     1681 cccacgctgg tgctgtcttc cggcttgccg cccagctcga gcacca
//
LOCUS       DATIHC010000779         1709 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17442, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000779 DATIHC010000000
VERSION     DATIHC010000779.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1709
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17442"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1186
                     /locus_tag="VLF16_12975"
     CDS             <1..1186
                     /locus_tag="VLF16_12975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015276207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="M28 family metallopeptidase"
                     /protein_id="HSX71834.1"
                     /translation="WEVDFTYLSQTDAGDVTAAVAPVDIALGAGNTSTSGCEPEDFTG
                     FPAGAIALVQRGACDFRIKAENAAEAGAAGVVIFNQGDTEDRKGLLSATLGDAYAGGI
                     PVLFATYDVGVSLAQTAELQLRMVTDVVRERTQTHNLIAETRHGNPNNVVMAGAHLDS
                     VYEGAGINDNGSGSAALLEMAVQLRKVRPNNKLRFAWWGAEESGLVGSTHYVTQLPPE
                     EKAKIKAYLNFDMIASPNFAYFVYDGDGSDFGLEGPPGSAAIEKLFEEYYALRGLPSE
                     GDEITFRSDYAQFFTDGIAFGGLFTGAEVLKTEEQAARYGGTAGIALDPCYHQACDGL
                     NNIDARALEINGDAMAFVTSWLSHSTKAIDDEIEAGQAGPTLKRAAKAYDITHWGKHW
                     IK"
     gene            complement(1234..>1709)
                     /locus_tag="VLF16_12980"
     CDS             complement(1234..>1709)
                     /locus_tag="VLF16_12980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003448409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="C4-dicarboxylate ABC transporter
                     substrate-binding protein"
                     /protein_id="HSX71835.1"
                     /translation="GSLLDPAGSYPARPPLSLRTLDEAEYYYDKGLPILQRYLPFRIA
                     SLADRYIILAIPLLVLLFPLFKAIGPIYQWRIRARIYRWYKHLREIDQQLYKGSLNGD
                     IGAEIARLEKLEDELARVEVPLSYSSELYELHMHLRYMIERLHAVQRRRAIAAAQ"
BASE COUNT          295 a          561 c          590 g          263 t
ORIGIN      
        1 gtgggaggtg gacttcacct acctgtcgca gaccgatgcc ggtgacgtga ccgcggccgt
       61 ggcgccggtg gacatcgccc tcggtgccgg caacacctcc accagcggct gcgagccgga
      121 agacttcacc ggcttccccg caggcgccat cgcgctggtg cagcgcggtg cgtgcgactt
      181 ccgcatcaag gcggagaacg ccgccgaggc cggggccgcc ggggtggtga tcttcaacca
      241 gggcgacacc gaggaccgca agggcctgct cagcgccacc ctgggcgacg cctacgccgg
      301 tggcattccc gtgctgttcg ccacctacga tgtcggcgtg agcctggcgc agaccgccga
      361 gctgcagttg cgcatggtca ccgacgtggt gcgcgagcgc acccagaccc acaacctcat
      421 cgccgagacg cgccacggca atccgaacaa cgtggtgatg gccggcgcgc acctggattc
      481 ggtgtacgag ggtgcgggca tcaacgacaa cggttcgggc agtgccgcgc tgctggagat
      541 ggccgtgcag ctgcgcaagg tgcggccgaa caacaagctg cgcttcgcct ggtggggggc
      601 cgaggagtcg gggctggtgg gctcgaccca ttacgtgacc cagctgccgc cggaagagaa
      661 ggcgaagatc aaggcatacc tgaacttcga catgatcgcc tcgccgaact tcgcctactt
      721 cgtgtatgac ggcgacggct cggacttcgg cctggaaggc ccgcccggct cggcggccat
      781 cgagaagctg ttcgaggagt actacgcact gcgcggcctg ccgtccgagg gtgacgagat
      841 caccttccgc tccgactatg cgcagttctt caccgacggc atcgcgttcg gcggcctgtt
      901 caccggagcc gaggtgctga agaccgagga gcaggcggcg cgctacggcg gcaccgcggg
      961 catcgcgctc gatccctgct accaccaggc ctgcgatggg ctgaacaaca tcgatgcccg
     1021 ggcgctggag atcaatggcg atgccatggc cttcgtcacc agctggctgt cgcattcgac
     1081 caaggcgatc gacgacgaga tcgaagccgg ccaggccggc ccgaccctga agcgcgccgc
     1141 caaggcctac gatatcaccc actggggcaa gcactggatc aagtgatcca cgcctgaccc
     1201 gaggccccgc caggcattgc ccggcggggc tttttattgg gccgcagcga tggcccggcg
     1261 gcgctgcacc gcgtgcaggc gctcgatcat gtagcgcagg tgcatgtgca gttcgtacag
     1321 ctcgctggag tacgacagcg gcacttcgac ccgggccagc tcatcctcca gcttctccag
     1381 gcgcgcgatc tcggcgccga tatcgccatt caggctgccc ttgtacaact gctggtcgat
     1441 ctcgcgcagg tgcttgtacc agcggtagat ccgcgcgcgg atgcgccact ggtagatcgg
     1501 gccgatggcc ttgaacagcg ggaacagcag caccagcagc gggatggcga ggatgatgta
     1561 gcggtcggcc agcgaggcga tgcggaacgg caggtagcgc tgcaggatcg gcaggccctt
     1621 gtcgtagtag tactcggcct cgtcgagagt gcgcagcgac agcggcggcc tggccgggta
     1681 gctgccggcc ggatcgagca ggctgccgt
//
LOCUS       DATIHC010000780         1945 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_6938, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000780 DATIHC010000000
VERSION     DATIHC010000780.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1945
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6938"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..606)
                     /locus_tag="VLF16_12985"
     CDS             complement(<1..606)
                     /locus_tag="VLF16_12985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-3' exonuclease H3TH domain-containing
                     protein"
                     /protein_id="HSX71836.1"
                     /translation="MSNAPLVLVDGSSYLYRAFHALPPLATSKGLQTGAVKGVLNMLK
                     SLRKQYPDSPFAVVFDAKGGTFRDQMFAEYKANRPPMPEELRGQVEPLHAAVRALGYP
                     LLCVEGVEADDVIGTLARRCAAAGRDVVISTGDKDMAQLVCPHVTLVNTMTGSVYDID
                     GVKAKFGVGPELIIDYLALMGDKVDNIPGVPGVGEKTAVGLL"
     gene            680..964
                     /locus_tag="VLF16_12990"
     CDS             680..964
                     /locus_tag="VLF16_12990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2782 domain-containing protein"
                     /protein_id="HSX71837.1"
                     /translation="MRALNRLMLAALLVASPLVAMAEEEVTGDPDVTIRQDGDKTITE
                     YRQNGFLYAIKVTPKNGKPYFLVRADGSEGNFVRSDQPDMLIPAWEIFSW"
     gene            971..1921
                     /locus_tag="VLF16_12995"
     CDS             971..1921
                     /locus_tag="VLF16_12995"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008002196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HSX71838.1"
                     /translation="MSVFTPLERHELEVFLEPYGLGRLKDFQGIAAGSENSNFFISLE
                     GGEFVLTLVERGPRGDMPFFVELLERLHQAGLPVPYAVPTRSGEALRELAGKPALLQP
                     RLAGKHLAQPNAHHCQEVGTWLARLHLATRDDILERRSDRGLDWMLEEGTVLALELHD
                     EQLPLLRDSLQEVEALKSRILALPRANLHADLFRDNALFDGNQLAGVIDFYNACSGPM
                     LYDLAITLNDWCSQPDDDFDLPRARALLGAYAALRPFTRAEAELWPAMLRIACLRFWL
                     SRLIAARRFQGRDVLVKDPAEFQRRLARRQRVDLALPFAL"
BASE COUNT          315 a          693 c          623 g          314 t
ORIGIN      
        1 cagcaggccc accgcggtct tctcgccgac gccgggcacg cccgggatgt tgtcgacctt
       61 gtcgcccatc agggccaggt aatcgatgat cagctcgggg ccgacgccga acttggcctt
      121 caccccgtcg atgtcgtaga cgctgccggt catggtattg accagggtga cgtgcgggca
      181 caccaactgg gccatgtcct tgtcgccagt ggagatcacc acgtcgcgac cggcggccgc
      241 gcagcgccgg gccagggtgc cgatcacgtc gtcggcctcc acgccctcca cgcacaacag
      301 cgggtagccg agcgcgcgca ccgccgcatg cagcggctcc acctggccgc gcagctcctc
      361 cggcatgggc gggcggttgg ccttgtattc ggcgaacatc tggtcgcgga aggtgccgcc
      421 cttggcgtcg aagaccaccg cgaaggggct gtccgggtat tgcttgcgca ggctcttgag
      481 catgttcagc acgcccttca ccgcgccggt ctgcaggccc ttggaggtgg ccagtggcgg
      541 cagtgcgtgg aacgcgcggt acaggtagga agagccgtcg accaggacca gcggggcgtt
      601 agacatgcgt ggaatcaacc ttttccatgg ggccggcgtt agaatggccg gaccattgac
      661 gagaaaggac aaggttacca tgcgcgcatt gaaccgcctg atgctggccg ccctgctggt
      721 cgccagcccc ctggtcgcga tggccgagga agaggtcacc ggcgacccgg acgtgaccat
      781 ccgccaggac ggcgacaaga ccatcaccga ataccggcag aacggctttc tttacgccat
      841 caaggtcacg ccgaagaacg gcaagcccta cttcctggtg cgggccgacg gcagcgaagg
      901 caacttcgtt cgctccgacc agccggacat gctcatcccc gcctgggaaa tcttcagctg
      961 gtaaccctcc atgtccgttt tcacccccct cgaacgtcat gaactggaag tcttcctcga
     1021 gccttacggg ctcggccgcc tgaaggactt ccaaggcatc gccgccggca gcgaaaacag
     1081 caatttcttc atcagcctgg agggcggcga gttcgtcctc accctggtgg aacgcggccc
     1141 gcgtggcgac atgccgttct tcgtcgaact gctcgagcgc ctgcaccagg ccggtctgcc
     1201 ggtgccctac gcggtgccga cacgcagcgg cgaggccctg cgcgaactgg ccggcaaacc
     1261 cgcgctgctg cagccgcgcc tggccggcaa gcacctcgcc cagcccaacg cccatcactg
     1321 ccaggaagtc ggcacctggc tggcgcgcct gcacctggcg acccgcgacg atatcctcga
     1381 gcggcgcagc gaccgcggcc tcgactggat gctggaagag ggcacggtgc tggccctgga
     1441 gctgcacgac gaacaactgc cgctgctgcg cgacagcctg caggaagtgg aggcgctgaa
     1501 gtcgcgcatc ctcgccctgc cgcgcgccaa cctgcacgcc gacctgttcc gcgacaacgc
     1561 gttgttcgac ggcaaccagc tggccggggt gatcgacttc tacaacgcct gttccggtcc
     1621 gatgctctac gacctggcga tcaccctgaa cgactggtgc tcccagcccg acgacgactt
     1681 cgacctgccc cgcgcccgcg ccctgctcgg tgcctatgcc gcgctacggc ccttcactcg
     1741 cgccgaggcc gagctgtggc cggccatgct gcgcatcgcc tgtctgcgct tctggctgtc
     1801 gcggctgatc gccgcgcggc gtttccaggg ccgcgacgtg ctggtcaagg atcccgccga
     1861 attccagcgg cgcctggccc ggcgccagcg ggtggatctg gcgctgccgt tcgccctctg
     1921 agcgtcggcc caccagctcg agggc
//
LOCUS       DATIHC010000781         5931 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30219, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000781 DATIHC010000000
VERSION     DATIHC010000781.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5931
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30219"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1404)
                     /gene="aceE"
                     /locus_tag="VLF16_13000"
     CDS             complement(<1..1404)
                     /gene="aceE"
                     /locus_tag="VLF16_13000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003171281.1"
                     /note="E1 component; part of pyruvate dehydrogenase; forms
                     a complex with DlaT and LpdC; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HSX71839.1"
                     /translation="MQDLDPVETQEWLDALESVLDKEGEDRAHYLLTRMGELATRSGT
                     QLPYAITTPYRNSIPVGHEARMPGDLFMERRIRSLVRWNALAMVMRTNLQDPDLGGHI
                     SSFASSATLYDIGFNYFFQAPTEEHGGDLIFYQGHASPGIYARAFLEGRISEEQMNNF
                     RREVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIQAIYQARFMKYLESRGYIPAGKQK
                     VWCFMGDGECDEPESLGAISLAGREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGV
                     FRGAEWNVNKVVWGRFWDPLLAKDVDGLLQRRMDEVIDGEYQNYKAKDGAYVREHFFN
                     SPELKEMVKDLSDQEIWNLNRGGHDPYKMYAAYHQAVNHKGQPTVVLAKTIKGYGMGR
                     AGEGQNITHQAKKMNEEALIAFRDRFDIPVKDDELENLPFVTAEPGSPEYKYLHERRA
                     ALGGFVPQRRAQSFSIPT"
     gene            1647..4550
                     /gene="glnE"
                     /locus_tag="VLF16_13005"
     CDS             1647..4550
                     /gene="glnE"
                     /locus_tag="VLF16_13005"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008882 - [glutamate-ammonia-ligase]
                     adenylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HSX71840.1"
                     /translation="MSLPVPAALPNTLQALADRACAVLPADWSEPRAQDLRRLCALSD
                     FVHEQAVRDPELLPALGASGELERRFAAGELRGQLQALLQDCADEDELGRRLRRFRNR
                     QQVRIVWRDLTRQADLAETCRDLSDLADACIDGAYHWLYPRHCEQFGTPIGRRSGQAQ
                     HLVILGMGKLGAHELNLSSDIDLIFGYPEGGETEGVKRSLDNQEFFIRLGQRLIKALD
                     AITVDGFVFRVDMRLRPYGSSGALVLSFNALEQYYQDQGRDWERYAMIKARVVGGDQA
                     AGKQLLEMLRPFVYRRYLDFSAIEALRSMKQLIQQEVRRKGMSENVKLGSGGIREVEF
                     IAQAFQLIHGGRDLSLQQRPLLKVLDTLEGQGYLPPAVVAEMKQGYEFLRYTEHALQA
                     IADRQTQMLPDDDIDRARVACIMGFADWAGFHARLMEWRGRIEWHFRQVIADPDEEEG
                     GEAETCVGGEWLPLWEEALEPEMAERQLAEAGFKEPAAALKRLIDLRGGTQVRTMQRL
                     GRERLDAFIPRLLAQAVEHDEPDLVLERVLPLVEAVARRSAYLVLLTENPGALQRLMS
                     LCAGSPWIAEQITRFPLLLDELLNEGRLFSPPLAPELAAELRERLTRIPEDDLEQQME
                     ALRHFKLAHGLRVAASEIAGTLPLMKVSDYLTWLAEAILDQVLALAWRQTVAKYGNPR
                     RADGSLCDPDFIIVGYGKVGGLEFGHGSDLDLVFIHDGDSQAETDGAKPIDGAQFFAR
                     LGQRIIHLLTTQTTSGQLYDVDMRLRPSGAAGLLVSSLGAFQRYQESEAWTWEHQALV
                     RARVLVGCARVGAAFERVRAEVLGRERDLPKLQAEVSEMRAKMRDNLGTRETAAGTAE
                     NAFEAASSFDLKQDAGGIVDIEFMVQYAALAWSRQHPELHRYTDNIRILDGLRDVGLM
                     PAADVELLQEAYKAYRSAAHRQALQKQPGKVGGDQFAAERRSVMRLWRELGLS"
     gene            4591..5514
                     /locus_tag="VLF16_13010"
     CDS             4591..5514
                     /locus_tag="VLF16_13010"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transaminase"
                     /protein_id="HSX71841.1"
                     /translation="MSMADRDGVIWYDGELVQWREATTHVLTHTLHYGMGVFEGVRAY
                     NTPQGTAIFRLQAHTDRLFDSAHIMGMKIPFTKEEINEATRAAVRENNLETAYIRPMV
                     FYGSEAMGLRATGLKVHVIVGAWHWGAYMGDEALQKGIKVRTSSFTRHHVNISMTRAK
                     ANGNYINSMLALQEAISGGADEAMLLDTEGYVAEGSGENIFLVKNGVVYTPEVTSCLN
                     GITRNTILTLADELGIKVVEKRITRDEVYICDEAFFTGTAAEVTPIREVDGRQIGIGR
                     RGPVTEKLQKAYFDLVTGKTSAHAEWRTPVK"
     gene            5668..>5931
                     /gene="waaF"
                     /locus_tag="VLF16_13015"
     CDS             5668..>5931
                     /gene="waaF"
                     /locus_tag="VLF16_13015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HSX71842.1"
                     /translation="MRILIVGPSWVGDMVMAQTLFVCLKQRHPGCEIDVLAPEWSRPI
                     LERMPEVRAALSFPLGHGVLDIATRRKIGKSLAGQYDQAILLPN"
BASE COUNT          977 a         1954 c         2002 g          998 t
ORIGIN      
        1 ggtcggaatg ctgaaactct gcgcgcggcg ctgcggcacg aaaccgccga gggcggcgcg
       61 gcgctcgtgc aggtacttgt attccgggct gcccggctct gcggtgacga agggcaggtt
      121 ctccagctcg tcgtccttga ccgggatgtc gaagcggtcg cggaaggcga tcagcgcctc
      181 ctcgttcatc ttcttcgcct ggtgggtgat gttctggccc tcgcccgccc ggcccatgcc
      241 gtagcccttg atggttttgg ccaggaccac ggtcggctgg cccttgtggt tgaccgcctg
      301 gtggtacgcc gcatacatct tgtacgggtc gtggccgccg cggttgaggt tccagatctc
      361 ctggtcggag aggtccttga ccatctcctt cagctcgggg ctgttgaaga agtgctcacg
      421 cacgtaggcc ccgtccttgg ccttgtagtt ctggtactcg ccgtcgatga cctcgtccat
      481 gcggcgctgc agcagaccgt cgacgtcctt ggccagcagc gggtcccaga agcggcccca
      541 gaccaccttg ttgacgttcc actcggcgcc acggaacacg ccttcgagtt cctggatgat
      601 cttgccgttg ccgcgcaccg ggccgtccag gcgctgcagg ttgcagttga tcacgaagat
      661 caggttgtcc agcttctcgc ggccggccag ggagatggcg cccagcgatt ccggctcgtc
      721 gcactcgccg tcgcccatga agcaccagac tttctgcttg ccggcaggga tgtagccgcg
      781 gctctccagg tacttcatga agcgcgcctg gtagatcgcc tggatcgggc ccagacccat
      841 ggacacggtg gggaactgcc agaagtccgg catcagccac gggtgcggat aggaggacag
      901 gcccttgccg tcgacttcgc gacggaagtt gttcatctgc tcttcgctga tgcggccctc
      961 gaggaaggcg cgggcgtaga tgccagggct ggcgtggccc tgatagaaga tcaggtcgcc
     1021 gccgtgttct tcggtcgggg cctggaagaa gtagttgaag ccgatgtcgt agagggtcgc
     1081 gctggaggcg aagctggaga tgtgaccgcc caggtccggg tcctgcaggt tggtgcgcat
     1141 caccatggcc agggcgttcc agcgcaccag cgagcggatg cggcgctcca tgaacaggtc
     1201 gccgggcatg cgtgcctcgt ggccgaccgg gatgctgttg cggtagggcg tggtgatggc
     1261 gtacggcagt tgggtaccgc tgcgggtggc cagttcgccc atgcgggtca gcaggtagtg
     1321 ggcgcggtct tcaccttctt tgtcgaggac ggactcgagg gcgtccagcc attcctgggt
     1381 ttcgacggga tcgaggtctt gcatggcttg ctccagggcg gaaaggcttc cagaatcgga
     1441 ggcctgggct cgtgcacgct ttttgggcgg gctacgtgaa gtcgtgtcga ccgacgtagt
     1501 tcgtggtcgc tcttgtagtt ttactacatt tcgatggcgc ctgtagagtc cgggacacat
     1561 tctttagtag taaaactaca gtttcaggaa gggcagcggc gcctgggtat ggatcgggat
     1621 tcgccgcccg tccccaagga tagaccatga gtttgcccgt accggccgcc cttccgaaca
     1681 ccctgcaagc cctcgctgat cgcgcctgcg ccgtgctccc tgcggactgg tcggagcccc
     1741 gcgcgcagga cctgcgccgg ctctgcgccc tcagcgattt cgtccacgaa caggccgtgc
     1801 gcgaccccga gctgctaccc gcactggggg cgagcggcga gctggagcga cgcttcgccg
     1861 caggcgagct gcgcgggcag ttgcaggccc tgctgcagga ctgcgccgac gaggacgagc
     1921 tgggtcgtcg cctgcggcgc ttccgcaacc gccagcaggt gcgcatcgtc tggcgcgatc
     1981 tgacccgcca ggccgacctg gccgagacct gccgcgacct gtccgacctc gccgacgcct
     2041 gcatcgacgg cgcctaccac tggctctacc cgcgtcactg cgaacagttc ggcacgccga
     2101 tcggccggcg ctccggccag gcgcagcacc tggtcatcct cggcatgggc aagctcggcg
     2161 cccacgagct caacctgtcc tcggacatcg acctgatctt cggctacccc gagggcggcg
     2221 agaccgaggg cgtgaagcgc tcgctggaca atcaggagtt cttcatccgc ctcggccagc
     2281 gcctgatcaa ggcgctcgac gccatcaccg tcgacggttt cgtgttccgc gtcgacatgc
     2341 gtctgcgtcc gtacggctcg tccggcgcgc tggtgctcag cttcaatgcg ctggagcagt
     2401 actaccagga ccagggccgc gactgggaac gctacgccat gatcaaggcg cgggtagtcg
     2461 gcggcgacca ggccgccggc aagcagttgc tggagatgct gcggcccttc gtctaccgcc
     2521 gctacctgga cttctccgcc atcgaggcgc tgcgctccat gaagcagctg atccagcagg
     2581 aggtgcggcg caagggtatg agcgagaacg tcaagctcgg ctccggcggc atccgcgagg
     2641 tggagttcat cgcccaggcc ttccagctga tccacggcgg ccgcgacctc agcctgcagc
     2701 agcggccgct gctcaaggtg ctcgataccc tggaaggcca gggctacctg ccgccggcgg
     2761 tggtcgccga gatgaagcag ggctatgagt tcctgcgcta caccgagcac gccctgcagg
     2821 ccatcgccga ccgccagacc cagatgctgc cggacgacga catcgaccgc gcgcgggtgg
     2881 cctgcatcat gggcttcgcc gactgggccg gctttcatgc gcgcctgatg gaatggcgcg
     2941 ggcgcatcga gtggcacttc cgtcaggtca tcgccgatcc ggacgaggag gagggcggcg
     3001 aggccgagac ctgcgtcggc ggcgaatggc tgccgctgtg ggaagaggcc ctggagcccg
     3061 agatggccga gcggcagctg gccgaagccg gcttcaagga gccggccgcc gcgctcaaac
     3121 ggctgatcga tctgcgcggc ggcacccagg tgcgcaccat gcagcggctc ggtcgcgagc
     3181 gcctggatgc cttcattccg cgcctgctgg ctcaggcggt ggaacacgac gagccggacc
     3241 tggtgctgga acgcgtgttg ccgctggtgg aggcggtggc gcggcgctcg gcctacctgg
     3301 tgttgctcac cgagaacccc ggtgcgctgc agcggctgat gagcctgtgc gcgggcagcc
     3361 cgtggatcgc cgagcagatc acccgtttcc cgttgctgct cgacgagttg ctcaacgaag
     3421 gccggctgtt cagcccgccg ctggcgccgg agctggccgc cgagctgcgc gagcggctga
     3481 cgcggattcc cgaggacgac ctggagcagc agatggaggc cctgcgtcac ttcaagctgg
     3541 cccacggcct gcgcgtggcc gcctcggaga tcgccggcac cctgccgctg atgaaggtca
     3601 gcgactacct gacctggctg gccgaggcca ttctcgatca ggtgctggcc ctggcctggc
     3661 gccagaccgt ggccaagtac ggcaacccgc gtcgcgccga cggcagcctg tgcgatccgg
     3721 acttcatcat cgttggctac ggcaaggtcg gcggcctgga gttcggccac ggctcggatc
     3781 tggatctggt gttcatccat gacggcgact cccaggccga gaccgacggc gccaagccca
     3841 tcgacggtgc gcagttcttc gcccgcctgg gccagcgcat catccacctg ctgaccaccc
     3901 agaccacctc cggccagctg tacgacgtcg acatgcgcct gcgcccttcg ggggcggcgg
     3961 gcctgctggt cagttccctc ggcgccttcc agcgctacca ggagagcgag gcctggacct
     4021 gggagcacca ggcgctggtg cgcgcccgtg tgctggtggg ttgcgcgcgg gtcggtgcgg
     4081 ccttcgagcg ggtgcgcgcc gaggtgctcg gtcgcgagcg cgacctgccc aagctgcagg
     4141 ccgaagtcag cgagatgcgc gccaagatgc gcgacaacct gggcactcgg gaaaccgccg
     4201 ccggcaccgc ggaaaatgcc ttcgaggcgg cgtcttcctt cgatctgaag caggacgccg
     4261 gaggtatcgt cgatatcgaa tttatggtgc aatacgcggc cctggcgtgg tcgcggcagc
     4321 atcccgagct gcaccgctac accgacaaca tccgcattct cgacggcctg cgcgacgtgg
     4381 gattgatgcc cgccgcagac gtcgaactgt tgcaggaggc ctacaaggcc taccgctccg
     4441 ccgcccaccg gcaggcgttg cagaaacagc cgggcaaggt cggcggcgac cagttcgccg
     4501 ccgagcgacg cagcgtgatg cgcctgtggc gcgagctggg tctgagctga ccgacgattt
     4561 gaacgagacg aacactgagg agtggcaacg atgtcgatgg ccgaccgcga tggcgtgatc
     4621 tggtatgacg gcgaactggt gcagtggcgc gaagcgacca cccacgtgct gacccacacc
     4681 ctgcactacg gcatgggcgt gttcgagggc gtacgcgcct acaacacccc gcagggcacc
     4741 gccatcttcc gcctgcaggc gcacaccgat cgcctgttcg actcggccca catcatgggc
     4801 atgaagatcc ccttcaccaa ggaggagatc aacgaggcca cccgcgccgc cgtgcgcgag
     4861 aacaacctgg aaaccgccta catccgcccg atggtgttct acggaagcga ggccatgggc
     4921 ctgcgcgcca ccggcctgaa ggtgcacgtg atcgtcggcg cctggcactg gggcgcctac
     4981 atgggcgacg aggcgctgca gaagggcatc aaggtgcgca ccagctcctt cacccgtcac
     5041 cacgtcaaca tctccatgac ccgcgccaag gccaacggca actacatcaa ttcgatgctg
     5101 gccctgcagg aagccatctc cggcggcgcc gacgaggcca tgctgctgga caccgaaggc
     5161 tacgtggccg agggttcggg cgagaacatc ttcctggtca agaacggcgt ggtgtacacc
     5221 ccggaagtga cctcctgcct caacggcatc acgcgcaaca ccatcctgac gctcgccgac
     5281 gagctgggca tcaaggtggt ggagaagcgc atcacccgcg acgaggtgta catctgcgac
     5341 gaggcgttct tcaccggcac cgccgccgaa gtcacgccga ttcgcgaagt ggacggccgg
     5401 cagatcggca tcggccgccg cggcccggtc accgagaagc tgcagaaggc ctacttcgat
     5461 ctggtcaccg gcaagaccag cgcccacgcc gaatggcgta ccccggtcaa ataagcccgg
     5521 attgaaaaat cgtgaccgaa accttatgta tgggtcacga tcgctccgcc gcgaaccgcc
     5581 gtggttcggg ccggtgcggt gacgaaaaga gataacaggg cagtgactgg ggaggcgtga
     5641 gcctccccgc tcatttccgg agtcgtgatg agaatactga tcgtgggccc gagctgggtc
     5701 ggtgacatgg tgatggcgca gaccctgttc gtctgcctca agcaacgcca ccccggctgc
     5761 gagatcgacg tgctggcgcc cgagtggagc cggccgatcc tcgagcgcat gcccgaggtg
     5821 cgcgcggcgc tgagcttccc gctcggccac ggtgtgctgg acatcgccac ccgtcgcaag
     5881 atcggcaagt cgctggccgg ccagtacgac caggcaatcc tgctgcccaa c
//
LOCUS       DATIHC010000782         1505 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17444, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000782 DATIHC010000000
VERSION     DATIHC010000782.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1505
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17444"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1505)
                     /locus_tag="VLF16_13020"
     CDS             complement(<1..>1505)
                     /locus_tag="VLF16_13020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003243772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSX71843.1"
                     /translation="RRQFEDPLFVSHAPEESLGVLRLEVDTYAFGSHFLRRALLTMLT
                     GFARSLLLSLILLVLFYAMLTKPLVGVIRALSDRDPRRDFSPVPCPSHHERDEIGTLV
                     AVANQQLANTHQEISQRREAEDRLTQYLAELENIVSARTAELKATNARLTLSNHELER
                     ARGTALEMAQARAAFLANMSHEIRTPLNGLLGMLALALDGSLSNEQRQQLSIAHDSGK
                     VLVELLNDILDLSKFEAGQLELEHIPFDLGTLVEETASLLSQNAGPNVELTCLIDPQL
                     PALVLGDPTRVRQIVSNLLSNALKFTRAGRVDLRVTPSPGGVRLLVSDTGIGIAEDAQ
                     KRIFQPFTQAGAGITRQFGGTGLGLALTRRLCEAMDGELTLNSREGVGSQFSATLPLP
                     SHAPPPRWPGLPGRIAAQCPTGSGLAELFDGWLPNWGLSYQRYDDKLPMDQADLLICV
                     DPEQLPALRQRTSQPLLLVSAYGTFLQPEQTAALAPFEQLARPLSRAALYR"
BASE COUNT          228 a          469 c          564 g          244 t
ORIGIN      
        1 gcggtacagc gcggcgcgtg acagcgggcg agccagctgc tcgaacggcg ccagggccgc
       61 cgtctgctcc ggctggagga aggtgccgta ggccgatacc agcagcagtg gctggctcgt
      121 gcgctggcgc agcgccggca gctgctcggg atcgacacag atcagcaggt cggcctggtc
      181 catgggcagt ttgtcatcgt agcgctggta gctgagcccc cagttcggca gccagccgtc
      241 gaacaattcc gccaggccgc tgcccgtcgg gcattgcgcc gcgattcgtc ccggcaatcc
      301 cggccagcgg ggcggcggcg cgtggctggg cagcggcagg gtggcgctga actggctgcc
      361 gacaccttcg cgggaattca gtgtgagctc gccgtccatg gcctcgcaca ggcgccgggt
      421 cagcgcgagg cccagacccg tgccgccgaa ttggcgggtg atcccggcgc cagcctgggt
      481 gaagggctgg aagatgcgct tctgcgcgtc ttcggcaatg ccgatgccgg tgtcgctgac
      541 cagcaggcgc acgccgcccg ggctgggcgt gacccgcagg tcgacgcggc cggcacgggt
      601 gaacttgagc gcgttggaca gcaggttgct gacgatctgc cgcacccggg tcgggtcacc
      661 cagcaccagg gccggcagct gcgggtcgat caggcaggtc agctcgacat tgggaccggc
      721 gttctgcgac agcaggctgg cggtttcctc gaccagggtg ccgaggtcga aggggatgtg
      781 ttccagctcc agctggccgg cctcgaactt ggacaggtcg agaatgtcgt tgagcagttc
      841 gaccagcacc ttgcccgaat catgggcgat ggacagctgc tggcgttgct cgttgctcag
      901 gctgccgtcc agggccaggg ccagcatgcc cagcaggcca ttgagcggcg tgcggatctc
      961 gtggctcatg ttggccagga aggcggcacg cgcctgggcc atttccagtg ccgtgccgcg
     1021 cgcgcgctcc agttcgtggt tggacagagt caggcgggcg ttggtcgcct tcagctcggc
     1081 ggtgcgcgcc gagacgatgt tttccagctc ggcgagatat tgggtcagac gatcttcggc
     1141 ctcgcggcgc tggctgattt cctggtgggt gttggccagc tgctggttgg ccacggccac
     1201 cagggtgccg atctcgtcgc gctcgtggtg ggacgggcag ggcaccggag agaagtcgcg
     1261 gcgcggatcg cggtcgctca gcgcgcggat cacgcccacc agcggcttgg tcagcatggc
     1321 gtagaacagc accagcagga tcagcgacag cagcaggctg cgagcgaagc cggtgagcat
     1381 ggtgagcagc gcgcgccgca ggaaatggct gccgaaggca taggtatcca cctccaggcg
     1441 cagcacgccc agggactcct cgggggcgtg gctgacgaac agcgggtctt cgaattggcg
     1501 ccgtt
//
LOCUS       DATIHC010000783         1592 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34815, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000783 DATIHC010000000
VERSION     DATIHC010000783.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1592
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34815"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..955
                     /locus_tag="VLF16_13025"
     CDS             <1..955
                     /locus_tag="VLF16_13025"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071111 - cyclic-guanylate-specific
                     phosphodiesterase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GGDEF domain-containing phosphodiesterase"
                     /protein_id="HSX71844.1"
                     /translation="SNGREVYLGASVGISLYPDDGQSGDDLLRNADSALHQAKQEGRN
                     TFRFYTQGLTDQAHTRLTLEGQLRQALKHNEFVLHFQPLVRASDGRAIGVEALLRWNS
                     EAGLISPAQFIPLAEETGLIVPIGNWVLREACRQMQFWRQQGLQLQTLAVNLSPRQFR
                     QADLVQQVRDALRDSGLPAGHLELEITEGALMENVEQTRVTLADLKALGLKLAIDDFG
                     TGYSSLAYLRRFPLDKLKIDQSFMRGVPEDEANLEIVATVVGLARNLKLCVLAEGVEA
                     AEQLQALRQLGCEQCQGYLFSRPLSAVQLAHWLRSEQQSVG"
     gene            1023..1208
                     /locus_tag="VLF16_13030"
     CDS             1023..1208
                     /locus_tag="VLF16_13030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003295340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71845.1"
                     /translation="MNIRIRQVNSAGHPCWQVQLDQHGVSFRSEAEARDFVRVLEGRL
                     KAPHPLPWRAAPQSHAS"
     gene            complement(1215..>1592)
                     /locus_tag="VLF16_13035"
     CDS             complement(1215..>1592)
                     /locus_tag="VLF16_13035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019582302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bcr/CflA family drug resistance efflux
                     transporter"
                     /protein_id="HSX71846.1"
                     /translation="PGYWLKRTVWVFCGATLALLAVAMAQPAQLWPLLIPLFISPASL
                     SCVLPNATACAMAGQGAHAGSASALIGSLQFCVAAVASTLVGSLHDGTARPMALIIAV
                     CGVVTVILALLTARHERRRALEF"
BASE COUNT          269 a          550 c          554 g          219 t
ORIGIN      
        1 gagcaatggc cgcgaggtgt acctgggcgc cagcgtgggc atcagcctgt atcccgacga
       61 cgggcagagc ggcgacgacc tgctgcgcaa tgccgacagc gccctgcacc aggccaagca
      121 ggagggccgc aataccttcc gcttctacac ccagggtctg accgaccagg cgcacacccg
      181 cctgaccctg gagggccagc tgcgccaggc gctcaagcac aacgaattcg tattgcactt
      241 ccagccgctg gtgcgcgcca gcgacggacg cgccatcggc gtggaggcgt tgctgcgctg
      301 gaacagcgag gccgggctga tctcgccggc gcagttcatt ccgctggccg aggagaccgg
      361 gctgatcgtg ccgatcggca actgggtgct gcgcgaggcc tgtcggcaga tgcagttctg
      421 gcggcagcag gggctgcaac tgcagacgct ggcggtcaac ctgtcgcccc gccagttccg
      481 ccaggccgac ctggtccagc aggtgcgcga tgccctgcgc gacagcggtc tgccggccgg
      541 gcacctggaa ctggagatca ccgagggcgc gctgatggag aacgtggagc agacccgcgt
      601 gaccctggcc gacctcaagg cgctgggcct gaagctggcc atcgacgact tcggcaccgg
      661 ctattcgtcg ctggcctacc tgcggcgctt cccgctggac aagctgaaga tcgaccagag
      721 cttcatgcgc ggcgtgccgg aggacgaggc caacctggag atcgtcgcca ccgtcgtcgg
      781 cctggcgcgc aacctcaagc tctgcgtgct ggccgagggc gtggaagccg ccgagcagct
      841 gcaggccttg cgccagctgg gttgcgagca gtgccagggc tacctgttca gccgcccgct
      901 gagcgccgtg cagctggccc actggctgcg cagcgagcag cagtcggtcg gttgactcag
      961 atcatctttc cttcgcgggg caggtctaga ctgcagcttc acgctctccg gggaggcccg
     1021 cgatgaacat tcgtatccgt caggtgaaca gtgccggtca cccgtgctgg caggtgcagc
     1081 tggaccagca cggggtcagt ttccgcagcg aggccgaggc ccgcgacttc gtgagagtgc
     1141 tcgagggacg cctgaaggcg ccccatcccc tgccctggcg cgccgcgccg caatcccacg
     1201 ccagctgagg cgcctcagaa ctccagcgcc cgacgccgct cgtggcgcgc cgtgagcagc
     1261 gccaggatca ccgtgaccac gccacacacg gcgatgatca gcgccatggg ccgggcggtg
     1321 ccgtcgtgca gcgaaccgac cagggtcgag gccacggccg ccacgcagaa ctgcagcgag
     1381 ccgatcagcg ccgaggcgct gccggcatgg gcgccctgcc cggccatggc gcaagcggtg
     1441 gcgttgggca gcacgcaaga caggctcgcg gggctgatga acagcggaat cagcagcggc
     1501 cacagttgcg ccggctgggc catggccacc gccagcagcg ccagggtcgc gccacaaaac
     1561 acccagaccg tgcgtttgag ccagtagccc gg
//
LOCUS       DATIHC010000784         3883 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_6950, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000784 DATIHC010000000
VERSION     DATIHC010000784.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3883
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6950"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(262..642)
                     /locus_tag="VLF16_13040"
     CDS             complement(262..642)
                     /locus_tag="VLF16_13040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71847.1"
                     /translation="MSTGLEAFFDDFVHAFARFDGALIARRYAAPYLALDGTGQARVF
                     TTAEAIAGYFQSTLDHYAAQGCRSCRYHSLETVSLGSASVLASVTWELLDDEGRTLAS
                     WRESYNFKRGDEGLRIYASTDHAE"
     gene            complement(648..1568)
                     /locus_tag="VLF16_13045"
     CDS             complement(648..1568)
                     /locus_tag="VLF16_13045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010487386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX71848.1"
                     /translation="MSNRRSDPLAQVSDFEIRLLRLFRSVVECGGFSAAESVLGIGRS
                     AISQQMSDLEQRLGLRLCQRGRAGFALTEEGREVYQSSLQLFGALESFRNNVNGLHRE
                     LRGELHIGLTDNLVTVPHMRITHALARLKELGPEVRIQIRMTPPSEVEQGVLDGSLHV
                     GVVPQSHALSGLEYQPLYGERSQLYCAVGHPLFYVDDTQLADSRLNAQDAIAPTFRLP
                     PEVQSQYQVLNCTASASDREGMAFLILTGRYIGYLADHYAQQWVQQGRLRVLKPASRF
                     YDLTLASVTRKGRRPQLVLETFLEALAKTS"
     gene            1677..3023
                     /locus_tag="VLF16_13050"
     CDS             1677..3023
                     /locus_tag="VLF16_13050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004424568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HSX71849.1"
                     /translation="MNMPQTATPSLASQLKLDAHWMPFSANRQFKRDPRIIVGAEGNI
                     LIDDQGRRVFDSLSGLWTCGAGHGRKEIQEAVSRQLGTLDYSPGFQYGHALSFQLAEK
                     IADLLPGELNHVFFTGSGSECADTAVKMAKAYWRLKGQSTKTRFIGRARGYHGVNIAG
                     TALGGIGGNRKMYGQLMDADHLPHTLQPGMAFTKGMAETGGVELANELLKLIELHDAS
                     NIAAVIVEPLSGSAGALIPPKGYLQRLREICTQHNILLIFDEVITGFGRMGTWSGAEY
                     FGVTPDILNAAKQITNGAIPLGAVVASKEIYDTFMNQPAAEHMIEFTHGYTYSAHPVA
                     CAAGLATLDLLHKDGLIQQSAELAPKFETLLHGLKGSKHVIDIRNCGLVGALQIAPRD
                     GDAVIRPFEAGLALWKAGFYVRFGGDTLQFGPTFNTQPEELERLFNAVGDVLNKLD"
     gene            3214..>3883
                     /locus_tag="VLF16_13055"
     CDS             3214..>3883
                     /locus_tag="VLF16_13055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HSX71850.1"
                     /translation="MSTVAHFINGEILLRNGRTAQVFNPSIGEPVRQVELADRATIQA
                     AIDAAKAAFPAWRNTPPAKRAQVMFRFKQLLEQNKDKIAALISEEHGKTLEDAVGELQ
                     RGIENVEYACGAPELLKGEFNRNAGPNIDSWSDFQPLGVVAGITPFNFPAMVPLWMYP
                     LAIVCGNCFILKPSERDPSSTLLIAQLLHEAGLPRGVLNVVHGGPDAVNAICDHPDIK
                     AVSFV"
BASE COUNT          690 a         1331 c         1247 g          615 t
ORIGIN      
        1 cggccggcgg gtttgccggt gctgggagca ggggcggggg caggcatcga agggtccgta
       61 ctgatgatcg ggattttgtt gcgcacagat accccagcgc gggtcacgaa acaaccctcc
      121 ggcgtcaaaa acgtgtgcct ctcggacgaa ggcaccgtct gttgcgataa aagcggtctg
      181 aagcgtcaga aaaacgtctg cgacgccgcg gtcacgctcg ctggaaaaat ggcgcaagcc
      241 ttagtggtac gcgcgttcca gctactcggc gtgatcggtc gaggcataga tgcgcagccc
      301 ttcgtcgccg cgcttgaagt tgtacgattc gcgccaggac gccagcgtgc gcccctcgtc
      361 atcgagcagt tcccaggtga cgctcgccag cacgctggcg ctgcccagcg acacggtttc
      421 cagcgagtga tagcgacagc tgcgacaccc ctgagcggcg tagtggtcga gcgtgctctg
      481 gaaatagccg gcgatggcct cggccgtggt gaacacacgt gcctgccccg tgccatccaa
      541 cgccagatag ggcgccgcat agcgccgggc gatcagcgcg ccgtcaaaac gggcgaaggc
      601 atggacgaag tcgtcgaaga aggcctcgag tcccgtgctc atgggcgtca gctggtcttg
      661 gccagcgcct ccagaaaggt ttccagcacc agttgcgggc ggcggccctt gcgggtcacc
      721 gaggccaggg tcaggtcgta gaagcggctg gccggcttca gcacccgcag gcggccctgc
      781 tgcacccact gctgggcgta gtggtcggcc aggtagccga tgtagcgccc ggtgaggatg
      841 aggaaggcca tgccctcgcg gtccgaggcg ctggccgtgc agttgagcac ctggtactgg
      901 ctctgcacct ccggcggcag gcggaaggtc ggggcgatgg cgtcctgggc gttgaggcgg
      961 ctgtcggcta gctgggtgtc gtccacatag aagaggggat ggcccaccgc gcagtacagc
     1021 tgcgagcgct cgccgtacag cggctggtac tccaggccgg acagcgcatg gctctgcggc
     1081 accacgccga cgtgcaggct gccgtcgagc acgccctgtt ccacttcgga gggcggcgtc
     1141 atgcggatct ggatgcgcac ctccgggccc agctccttga gccgcgccag cgcatgggtg
     1201 atgcgcatgt gcggcacggt caccagattg tcggtgaggc cgatgtgcag ctcgccacgc
     1261 agctcgcggt gcaggccgtt gacgttgttg cgaaaactct ccagcgcccc gaacagctgc
     1321 agcgaggact ggtacacctc gcggccttcc tcggtcaggg cgaagccggc gcggccgcgc
     1381 tggcacaggc gcagacccag acgctgctcc agatcgctca tctgctggct gatggccgag
     1441 cggccgatac ccagcacgct ctcggcggcg gagaagccgc cgcattcgac cacgctgcgg
     1501 aacaggcgca gcaggcggat ctcgaagtcg ctgacctggg ccagcgggtc ggaacggcgg
     1561 ttgctcattg tttagtgatc acttaactga aattgcgaag atttggattt tcgtgacttt
     1621 aggcccgtgg caccttgcct ggcaacaaga ccacagtgcc gctctggaga gccacgatga
     1681 acatgccgca gactgccacc ccgtccctgg ccagccagct caagctggat gcccactgga
     1741 tgcccttctc cgccaatcgc cagttcaagc gcgacccgcg gatcatcgtc ggcgccgaag
     1801 gcaacatcct catcgacgac cagggccgcc gcgtgttcga cagcctctcg ggcctgtgga
     1861 cctgcggcgc cggccacggc cgcaaggaaa tccaggaagc cgtgtcgcgc cagctcggca
     1921 ccctcgacta ctccccgggc ttccagtacg gccacgcgct gtcgttccag ctcgccgaga
     1981 agatcgccga cctgctgccg ggcgagctca accacgtgtt cttcaccggc tccggctccg
     2041 agtgcgccga cacggcggtg aagatggcca aggcctattg gcgcctcaag ggccagtcga
     2101 ccaagacccg cttcatcggc cgcgcccgcg gttatcacgg cgtgaacatc gccggcaccg
     2161 ccctgggcgg catcggcggc aaccgcaaga tgtacggcca gctgatggat gccgatcacc
     2221 tgccgcacac cctgcagccg ggcatggcgt tcaccaaggg catggccgag accggcggcg
     2281 tggagctggc caacgagctg ctcaagctga tcgagctgca tgacgcctcc aacatcgccg
     2341 cggtgatcgt cgagccgctg tccggctcgg ccggcgcgct gatcccgccg aagggctact
     2401 tgcagcgcct gcgcgaaatc tgcacccagc acaacatcct gctgatcttc gacgaggtca
     2461 tcaccggctt cggccgcatg ggcacctgga gcggcgcgga gtacttcggc gtcaccccgg
     2521 acatcctcaa tgccgccaag cagatcacca acggtgccat cccgctgggc gcggtggtgg
     2581 cctcgaagga gatctacgac accttcatga accagccggc ggccgagcac atgatcgagt
     2641 tcacccacgg ctacacctat tccgcccacc cggttgcctg cgccgccggc ctggccaccc
     2701 ttgacctgct gcacaaggac ggcctgatcc agcagtccgc cgagctggcg ccgaagttcg
     2761 agacgctgct acacggcctg aagggcagca agcacgtgat cgacatccgc aactgcggcc
     2821 tggtcggcgc gctgcagatc gccccgcgcg acggcgacgc cgtgatccgc ccgttcgagg
     2881 ccggcctggc cctgtggaaa gccggcttct acgtgcgctt cggcggcgac accctgcagt
     2941 tcggcccgac cttcaacacc cagccggaag aactggagcg cctgttcaac gccgtcggcg
     3001 acgtgctgaa caagctcgac tgaacacggc ttttcaccct tctccctccg ggagagggca
     3061 cttgatcgag tagaggtgga agcccgcacg gcgacttcca ccgcccagcc gtagggtgga
     3121 tgtcgctgtt cacatccacc aggccggcga cacccattcg cggtggatga gcagagcgtc
     3181 atccacccta cgtgacacca acgaggagtt ttcatgagca ccgtcgccca cttcatcaat
     3241 ggcgaaatct tgctgcgcaa tggccgcacc gcccaggtct tcaacccgtc catcggcgag
     3301 cccgtgcgtc aggtcgagct ggccgaccgc gccaccatcc aggccgccat cgacgccgcc
     3361 aaggccgcct tcccggcctg gcgcaacacc ccgccggcca agcgcgccca ggtgatgttc
     3421 cgcttcaagc agctgctgga gcagaacaag gacaagatcg ccgcgctgat cagcgaagag
     3481 catggcaaga ctctcgaaga cgccgttggc gaactgcagc gcggcatcga gaacgtcgag
     3541 tacgcctgcg gcgccccgga gctgctcaag ggcgagttca accgcaacgc cggcccgaac
     3601 atcgacagct ggagcgactt ccagccgctg ggcgtggtcg ccggcatcac cccgttcaac
     3661 ttcccggcca tggtgccgct gtggatgtac ccgctggcca tcgtctgcgg caactgcttc
     3721 atcctcaagc cgtccgagcg cgaccccagc tcgaccctgc tgatcgccca gctgctgcac
     3781 gaagccggcc tgccgcgcgg cgtgctcaac gtggtgcacg gcgggccgga cgcggtgaac
     3841 gcgatctgcg accacccgga tatcaaggcg gtatccttcg ttg
//
LOCUS       DATIHC010000785         2587 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_26816, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000785 DATIHC010000000
VERSION     DATIHC010000785.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2587
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26816"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..314
                     /locus_tag="VLF16_13060"
     CDS             <1..314
                     /locus_tag="VLF16_13060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HSX71851.1"
                     /translation="LVQNGLRYSAQVHQLGQVWLKLYRDVDSDLPTLEVLDDGPGVPA
                     EQMQHIFEPFYTTDNKGTGLGLYISRELCESNQARLDYKLREGGGSCFRITFAHPRKL
                     S"
     gene            317..1657
                     /locus_tag="VLF16_13065"
     CDS             317..1657
                     /locus_tag="VLF16_13065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008569735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HSX71852.1"
                     /translation="MSTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWL
                     AREPFDLCLTDMRLPDGTGLDLVQHIQQRHAQVPVAMITAYGSLDTAINALKAGAFDF
                     LTKPVDLGRLRELVATALRLRSGESEEGPVDTRLLGESPPMKSLRNQIQKLARSQAPV
                     YISGESGSGKELVARLIHEQGPRADKPFVPVNCGAIPSELMESEFFGHKKGSFTGAIE
                     DKQGLFQAANGGTLFLDEVADLPLAMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCAT
                     HKDLAAEVAAERFRQDLFYRLNVIELRVPPLRERREDIPLLADTMLRRLSEGSGLAAV
                     TITGDALDKLKCYRFPGNVRELENMLERAYTLCENGQIQAIDLRLADAAPATEGSEAS
                     LSQIDNLEDYLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID"
     gene            complement(1694..>2587)
                     /locus_tag="VLF16_13070"
     CDS             complement(1694..>2587)
                     /locus_tag="VLF16_13070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012316351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSX71853.1"
                     /translation="DFYPGLGERLLAATGIDPEVHVTGLYWLDLHDEVEALAWGVREG
                     RAFQSVDVAEVRQRLPGLGPHFRRAIYAAGMANVRNPRLLKALRVALLAMPNVRLREQ
                     CPVVGFVHDNERIRGVITAGGELCAEHIVLAAGAWSGDLLKTLNLDLPIGPVKGQMIL
                     YKCPEHFLSAMVLAEGRYAIPRKDGHVLIGSTLEHVGFDRTPTDEALVSLKSSAEELL
                     PGLADATVVGHWAGLRPGSPGGIPFVGEMPEYPGLWLNCGHYRNGLVLAPASCELLKN
                     LMLREAPIIDPSPYSPVGRLG"
BASE COUNT          582 a          853 c          733 g          419 t
ORIGIN      
        1 atctggtgca gaacggcctg cgctacagcg ctcaggtcca ccagctcggt caggtgtggc
       61 tcaagctcta ccgcgatgtc gacagcgacc tgccgacact cgaggtactg gacgatggtc
      121 ccggcgtgcc ggccgagcag atgcagcaca tcttcgagcc gttctacacc acggataaca
      181 agggcaccgg cctgggcctg tacatttccc gcgagctgtg cgaaagcaac caggcacgcc
      241 tcgactataa actccgcgaa ggcggcggca gctgcttccg catcaccttc gcccacccac
      301 gcaaactgag ctgaccatga gcacccggca gagagccctg atcgtcgacg acgaacccga
      361 catccgcgaa ctcctggaga ttaccctggg gcgcatgaag ctcgacacgc gcagcgcgcg
      421 caacgtcaag gaagcccgcg agtggctggc gcgcgagccg ttcgacctgt gtctcaccga
      481 catgcgcctg cccgacggca cgggtctgga cctggtccag cacatccagc agcgccatgc
      541 ccaggtgccg gtggcgatga tcaccgccta cggcagcctc gacacggcga tcaacgcgct
      601 caaggccggc gccttcgact tcctgaccaa accggtggac ctcggccgcc tgcgcgagct
      661 ggtcgccacc gccctgcgcc tgcgcagcgg cgagagcgaa gaaggcccgg tggacacccg
      721 cctgctcggc gagtcgccgc cgatgaagtc gctgcgcaat cagatccaga agctcgctcg
      781 cagtcaggcg ccggtttaca tcagcggtga gtcgggcagc ggcaaggagc tggtggcccg
      841 cctcatccac gaacagggcc cgcgcgccga caagcccttc gtgccggtca actgcggcgc
      901 catcccctcg gagctgatgg agagcgagtt cttcggccac aaaaaaggca gcttcaccgg
      961 cgccatcgaa gacaagcagg gcctgttcca ggcggccaat ggcggcaccc tgttcctcga
     1021 cgaagtggcc gatctaccgc tggccatgca ggtcaagctg ctgcgcgcca ttcaggaaaa
     1081 ggcagtgcgc gcggtcggcg gccagcagga ggtggtggtg gacgtgcgca tcctctgcgc
     1141 cacgcacaag gatctggcag cggaggtggc tgccgaacgc ttccgccaag acctgttcta
     1201 ccgactgaac gtcatcgagc tgcgcgtacc tccactgcgc gaacgccgcg aagatattcc
     1261 tctactagcc gataccatgc tgcgccggct atccgaaggc agtggtctag cagccgtgac
     1321 catcaccggg gacgctctgg acaagctcaa gtgctatcgc tttcccggca acgtgcgcga
     1381 actggagaac atgctcgagc gcgcctatac cctgtgcgag aacggccaaa tacaggcgat
     1441 cgatcttcgc ctggcggatg cagcaccagc tactgagggc agtgaagcct cactatcgca
     1501 gatagacaat ctcgaagact atctagaaga aatcgagcgc aagctaatta tgcaggcgct
     1561 agaggaaacc cgttggaacc gcacagctgc cgctcagaga ctagggctga cctttcgctc
     1621 aatgagatat cgcttgaaaa aactagggat tgactaattg gccattgcag tttagctgac
     1681 tgataaaggt gagttagccc agccgcccta caggcgaata cggtgaagga tcgataattg
     1741 gcgcctcacg cagcatcaaa ttcttcagca gctcacatga agccggagcc aacactagac
     1801 cattacgata atggccgcag tttagccaca agccgggata ctcgggcatc tcaccaacaa
     1861 aaggaatacc gcccggggaa ccagggcgca aacccgccca atgccccacc actgtcgcat
     1921 cagccagccc tggcaacagc tcttcggcag aggacttcag gctgaccaaa gcctcgtcgg
     1981 tcggtgtcct gtcgaagcca acatgctcca aagtactgcc tatcaaaacg tggccgtcct
     2041 tgcgcggaat cgcatagcgc ccctctgcta acaccatggc cgataggaag tgctcgggac
     2101 atttgtagag aatcatctgg cccttgaccg gaccgatagg cagatcaagg ttgagcgtct
     2161 tgagcaaatc gccactccaa gcaccagccg ccaacactat atgctctgca cagagctcgc
     2221 cacctgcggt gattaccccc cgaatacgct cattgtcatg aacgaaacca acgaccggac
     2281 attgctcacg cagccgcaca tttggcatcg ccagcaatgc cacgcgcagc gccttaagca
     2341 accgtggatt gcggacgttg gccatgcctg ccgcataaat ggcccgtcta aagtgcggac
     2401 ccaatccagg caggcgctgg cgcacctcgg cgacatccac cgattgaaat gctcgcccct
     2461 cgcgcacgcc ccaagccagc gcctcgactt cgtcatggag gtccagccag tacagaccgg
     2521 tgacatggac ctcgggatca atccctgtcg ccgcaagcag ccgctcgcca agacccggat
     2581 aaaaatc
//
LOCUS       DATIHC010000786         1948 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11459, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000786 DATIHC010000000
VERSION     DATIHC010000786.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1948)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1948)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1948
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11459"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..801)
                     /gene="thrC"
                     /locus_tag="VLF16_13075"
     CDS             complement(<1..801)
                     /gene="thrC"
                     /locus_tag="VLF16_13075"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HSX71854.1"
                     /translation="MRYISTRGQAPALNFEDVLLAGLASDGGLYVPENLPRFTQEEIA
                     SWAGLPYHELAFRVMRPFVAGSIADADFKNILEATYGVFAHSAVAPLRQLDGNEWVLE
                     LFHGPTLAFKDFALQLLGRLLDHVLSKRGERVVIMGATSGDTGSAAIEGCKACEHVDI
                     FIMHPHNRVSEVQRRQMTTILGENIHNIAIEGNFDDCQEMVKASFADQGFLKGTRLVA
                     VNSINWARIMAQIVYYFHAALQLGGPARSVAFSVPTGNFGDIFAGYLAR"
     gene            complement(814..>1948)
                     /locus_tag="VLF16_13080"
     CDS             complement(814..>1948)
                     /locus_tag="VLF16_13080"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019822092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HSX71855.1"
                     /translation="ITDDVFAVADNPEIDIVIELIGGYTLAHELVLKAIENGKHVVTA
                     NKALIAVHGNEIFAKAREKGVIVAFEAAVAGGIPVIKAIREGLAANRINWLAGIINGT
                     GNFILTEMREKGRAFADVLKEAQALGYAEADPTFDVEGIDAAHKLTILASIAFGIPLQ
                     FDKAYTEGISKLTSADVNYAEALGYRIKHLGVARRTEAGIELRVHPTLIPADRLIANV
                     NGVMNAVMVNGDAAGSTLFYGAGAGMEPTASSVVADLVDVVRALTTDPENRVPHLAFQ
                     PDALSDHPILPIGECESAYYLRIQAKDHPGVLAQVASILSERGINIESIMQKEVEEHD
                     GLVPMILVTHRVVESRIDDAIAALEGLADVVGKVVRIRVEQLV"
BASE COUNT          314 a          603 c          682 g          349 t
ORIGIN      
        1 gcgcgccaga tacccggcga agatgtcgcc gaagttgccg gtcggcaccg agaaggccac
       61 ggaacgcgcc gggccaccca gctgcagggc tgcgtggaag tagtagacga tctgggccat
      121 gatccgcgcc cagttgatcg agttgaccgc gaccaggcgg gtgcccttga ggaagccctg
      181 atcggcgaag ctggccttga ccatctcctg gcagtcgtcg aagttgcctt cgatggcgat
      241 gttgtggatg ttctcgccga ggatggtggt catctgccgg cgctgcacct cggacacgcg
      301 gttgtgcggg tgcatgatga agatgtcgac gtgctcgcag gccttgcagc cctcgatggc
      361 ggccgaaccg gtgtcgccgg aggtggcgcc catgatcacc acgcgctcgc cacgcttgct
      421 cagcacgtgg tcgagcaggc gccccagcag ctgcagggcg aagtccttga aggccagagt
      481 cggaccatgg aacagctcca gcacccactc gttgccgtcg agctggcgca gcggcgccac
      541 ggcgctgtgg gcgaacacgc cgtaggtcgc ctcgaggatg ttcttgaaat cggcgtcggc
      601 aatgctgccg gcgacgaagg ggcgcatcac gcggaaggcc agctcgtggt acggcaggcc
      661 ggcccaggag gcgatctcct cctgggtgaa gcgcggcagg ttttccggca cgtagaggcc
      721 gccatcgctg gccaggccgg cgagcaggac gtcttcgaaa ttgagggccg gggcctggcc
      781 gcgggtgctg atataacgca tgactcttct acctcagacc agttgctcga cgcggatgcg
      841 cacgactttg ccaaccacgt cggccagccc ctcgagggcg gcgatggcgt cgtcgatgcg
      901 gctctccacc acgcggtggg tgaccaggat catcggaacc aggccgtcgt gctcctcgac
      961 ctccttctgc atgatcgact cgatgttgat gccgcgctcc gacaggatgc tcgccacctg
     1021 ggccagcacg cccggatggt ccttggcctg gatgcgcagg tagtaggcgc tctcgcactc
     1081 gccgatcggc aggatcgggt ggtcggacag ggcatccggc tggaaggcca ggtgcggcac
     1141 gcggttttcc gggtcggtgg tcagggcgcg aaccacgtcg accaagtcgg cgaccacgga
     1201 cgaggcggtc ggctccatgc cagcgccggc gccgtaaaac agggtgctgc cggcggcatc
     1261 gccgttgacc atcaccgcgt tcatcacgcc gttgacgttg gcgatcaggc ggtcggccgg
     1321 gatcagcgtc gggtgtacgc gcagctcgat gccggcctcg gtgcgacggg ccacgccgag
     1381 gtgcttgatg cggtagccca gggcctcggc gtagttcacg tcggcactgg tcagcttgct
     1441 gatgccctcg gtgtaggcct tgtcgaactg cagcgggatg ccgaaggcga tggaggcgag
     1501 gatggtcagc ttgtgggcgg cgtcgatgcc ttccacgtcg aaggtcggat cggcctcggc
     1561 gtagcccagg gcctgggctt ccttcagcac gtcggcgaag gcacgacctt tctcgcgcat
     1621 ctcggtgagg atgaagttgc cggtgccgtt gatgatgccg gccagccagt tgatgcggtt
     1681 ggcggccagg ccctcgcgga tcgccttgat caccgggatg ccaccggcca cggcagcctc
     1741 gaaggcgacg atgacaccct tctcgcgggc cttggcgaag atttcgttgc cgtgtacggc
     1801 gatcagcgcc ttgttggcgg tgaccacatg cttgccgttt tcgatcgcct tgagcaccag
     1861 ctcgtgggcc agggtatagc caccgatcag ctcgatgacg atatcgattt ccgggttgtc
     1921 ggccactgca aagacgtcat cggtaatg
//
LOCUS       DATIHC010000787         2401 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_22011, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000787 DATIHC010000000
VERSION     DATIHC010000787.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2401
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22011"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..631
                     /locus_tag="VLF16_13085"
     CDS             <1..631
                     /locus_tag="VLF16_13085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014852472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSX71856.1"
                     /translation="SSLAAPAPEPAGVPQVKIEPYRPDGLAEARQAIQAGDYRKAIAE
                     LEELQKTRGRDPEVLRWLARAYLADGQQQRLLGWLPAQLAQMPQDSELRLLLARAQLQ
                     AGATRDAVATLEQNAPSLVQEPTYHALLAASYQQTGQWQQSAALYREMVALRPSQSTW
                     QLGLAIALEQLDQPAEAARHYRLALQGLGLDESAKRFASERAAALGGRG"
     gene            628..2367
                     /locus_tag="VLF16_13090"
     CDS             628..2367
                     /locus_tag="VLF16_13090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014852473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspE/PulE family protein"
                     /protein_id="HSX71857.1"
                     /translation="MSEETRQPGEASNRKVRLGDLLVQAGLISDTQLQLALQEQKRTG
                     SKLGRTVVDMGFVAEVKLLTALSEQLKIPFIELKHFKFDQPLVQTLPEAMARRFRAIP
                     LSREGGGILVGMSDPLDLFAQDEMERILKTRVRPAVVREAELLATLDLVYRRTSEIAS
                     IAGELEGELQDSDFDLSKLGADNVSDAPVVRLLQTLFEDAVQMKASDIHIEPDEGVVR
                     IRQRIDGVLNEQVMKEQRIASALVMRLKIMSGLDISEKRLPQDGRFNIRVKNRSIDVR
                     VSTMPVQYGESVVMRLLDQSAGIANLDAGGMPPDMLARFRRLLQRPYGMVLVTGPTGS
                     GKTTTLYAGLAELNSPEKKIITVEDPVEYRLPRINQVQVNTKIELTFARVLRAALRQD
                     PDIVLIGEMRDQETAEIGLRAALTGHLVLSTLHTNDALTSAMRLVDMGAEPFLVATSL
                     NAVLAQRLVRRVCENCMEDHQPEPQQLAWLESLQGASLAGRSFKHGAGCHQCHNTGYS
                     GRVGVYELLEMDEAMIAALRRNDPQGFAEAARRSAHYRPLAACALDYALAGITSVEEV
                     LKVCATLTDEVQA"
BASE COUNT          408 a          868 c          796 g          329 t
ORIGIN      
        1 atcttcactt gcggcacccg ctccggagcc tgccggtgtg ccgcaagtga agatcgagcc
       61 ctatcgtcca gacggcctgg ccgaggcgcg tcaggccatc caggccggtg actaccgcaa
      121 ggccatcgcc gagctggaag aactgcagaa gacccgtggc cgcgacccgg aagtactgcg
      181 ctggctggcc cgcgcctacc tggcagacgg ccagcagcag cgcctgctcg gctggctgcc
      241 ggcgcagctg gcgcaaatgc cgcaggacag cgaactgcgc ctgctgctgg cccgcgccca
      301 attgcaggcc ggtgctaccc gggacgccgt ggctaccctg gagcagaacg ccccgtcact
      361 ggtccaggaa cccacctacc acgcgctgct ggcggccagc taccagcaga ccgggcagtg
      421 gcagcagagc gccgccctgt accgggagat ggtcgccctg cgccccagcc agtccacctg
      481 gcagctgggc ctggccatcg ccctggagca gctcgaccag ccggccgagg ctgcccgtca
      541 ctatcgcctg gccctgcagg ggctggggct ggacgagagc gccaagcgct tcgccagcga
      601 acgcgccgcg gcgctgggag gccgaggatg agcgaagaaa cacgtcagcc gggcgaggcg
      661 agcaatcgca aggtgcgcct gggcgacctg ctggtgcagg ccggcctgat cagcgatacg
      721 cagctgcaac tggcgctgca ggagcagaaa cgcaccggct ccaagctcgg ccgcaccgtg
      781 gtcgatatgg gcttcgtcgc cgaggtcaag ctgctcaccg cactgtccga gcagctgaag
      841 atccctttca tcgagctcaa gcacttcaag ttcgaccagc cgctggtgca gaccctgccc
      901 gaggccatgg cccggcgctt ccgcgccatc ccgctgtcgc gcgagggcgg cggcatcctg
      961 gtcggcatgt ccgacccgct cgacctgttc gcccaggacg agatggagcg catcctcaag
     1021 acccgcgtgc gcccggcggt ggtgcgcgag gcggagctgc tggcgactct cgacctggtc
     1081 taccggcgca ccagcgagat cgcctcgatc gccggcgagc tggagggcga gctgcaggac
     1141 agcgacttcg acctgtccaa gctcggcgcc gacaacgtca gcgacgcgcc ggtggtgcgt
     1201 ctgctgcaga cgctgttcga agacgccgtg cagatgaagg cctcggacat ccacatcgag
     1261 ccggacgagg gcgtggtgcg cattcgccag cgtatcgacg gcgtgctcaa cgagcaggtg
     1321 atgaaggagc agcgcatcgc ctcggcgctg gtcatgcgcc tgaagatcat gtccggcctg
     1381 gacatctccg aaaaacgcct gccgcaggac ggccgcttca acatccgggt gaagaaccgc
     1441 agcatcgacg tgcgggtctc gaccatgccg gtgcagtacg gcgagtcggt ggtgatgcgt
     1501 ctgctcgacc agagcgccgg catcgccaac ctggacgccg gcggcatgcc accggacatg
     1561 ctggcgcgct tccgccgcct gctgcagcgg ccctatggca tggtgctggt caccggccct
     1621 accggctcgg gcaagaccac cacgctgtac gcaggcctcg ccgagctgaa cagcccggag
     1681 aagaagatca tcaccgtcga ggacccggtc gaataccgcc tgccgcggat caaccaggtg
     1741 caggtcaaca ccaagatcga gctgaccttc gcccgcgtgc tgcgcgccgc cctgcgtcag
     1801 gacccggaca tcgtgctgat cggcgagatg cgcgaccagg aaaccgccga gatcggcctg
     1861 cgcgccgcgc tcaccggcca cctggtgctg tcgaccctgc acaccaacga cgccctgacc
     1921 tcggccatgc gtctggtcga catgggtgcc gagccgttcc tggtcgccac ctcgctcaac
     1981 gccgtgctgg cccagcgcct ggtgcgccgc gtctgcgaga actgcatgga agaccaccag
     2041 cccgagccgc agcagctggc ctggctggag agtctgcagg gcgcctcgct ggctggccgc
     2101 agcttcaagc acggcgccgg ctgccaccag tgccacaaca ccggctattc cgggcgcgtc
     2161 ggcgtctacg agctgctgga aatggacgag gcgatgatcg ccgccctgcg ccgcaacgac
     2221 ccccagggct tcgccgaggc cgcgcgccgc agcgcccact accgccccct ggccgcctgc
     2281 gcgctggact acgcgctggc gggcatcacc agcgtcgagg aagtgctcaa ggtctgcgcc
     2341 accctcaccg acgaggtgca ggcgtgacac ccgcacggcg gctcacgcca gcctccccct
     2401 c
//
LOCUS       DATIHC010000788         1728 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4499, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000788 DATIHC010000000
VERSION     DATIHC010000788.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1728
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4499"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..582
                     /locus_tag="VLF16_13095"
     CDS             <1..582
                     /locus_tag="VLF16_13095"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HSX71858.1"
                     /translation="ALENVRLSQHLDRRVQERTRELQQAYDRIHRLSMTDELTGLHNR
                     RGFYLLADQALRHAARYGGGYTLMLMDLDDLKQVNDQAGHEAGDALLRCAAEVLRSVL
                     READVAARMGGDEFCVLAPGLAGDNLRQRLQQAIAACNEEGQLFPLAASFGLVEVEDC
                     TGVTLDDVLARADERMYVDKRSRRASPTASPSA"
     gene            complement(560..1534)
                     /locus_tag="VLF16_13100"
     CDS             complement(560..1534)
                     /locus_tag="VLF16_13100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015885387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium and cobalt transport protein CorA"
                     /protein_id="HSX71859.1"
                     /translation="MGQVVAAAAYHKGKKVADITLDEGRTWATRPDHFVWIGLRDPGS
                     PELSVLQQQFDLHELAMEDAIAQHTRPKLEIFGDALFMVLYSPIRRPNGRLEFVETQL
                     FAGKGYVISARYGDSAPYSTVRQRCEARPLLLEHGEDFVLYALLAFVIENYRPLLDCI
                     HVELEDIEQTVLSRPLTQADVERIHALRRDLLRLRRQVAPLSEICQELQQLDFPFIDK
                     HMRPYFRDIAIHVNRLLEDLTGLREMADHAIEIGLLLESSRQSLTQRKFAAWAAILAF
                     PTAVAGIYGMNFDYMPELTWHYGYFGVLSLVGLGCVGLFANFKRMGWL"
BASE COUNT          277 a          568 c          611 g          272 t
ORIGIN      
        1 gccctggaga acgtccggct ctcccagcac ctcgaccgcc gcgtgcagga gcgcacccgc
       61 gagctgcagc aggcctacga ccgtatccac cggctgtcga tgaccgacga gctgaccggc
      121 ctgcacaacc gtcgcggctt ctacctgctg gccgaccagg cgctgcgcca tgcggcgcgc
      181 tacggcggcg gctacaccct gatgttgatg gacctggacg acctcaagca ggtcaacgac
      241 caggccggcc acgaggctgg cgacgcgctg ctgcgctgcg ccgccgaggt gttgcgctcg
      301 gtgctgcgcg aggccgatgt ggctgcacgc atgggtggcg acgagttctg cgtgctggcc
      361 ccgggcctgg ccggcgacaa tctgcgccag cgcctgcagc aggccatcgc cgcctgcaat
      421 gaggaagggc agctgtttcc gctagccgcc agcttcggcc tggtcgaggt ggaggactgc
      481 accggcgtga ccctggatga cgtgctggcc cgcgccgacg agcgcatgta cgtggacaag
      541 cgcagccgcc gcgcaagccc tacagccagc ccatccgctt gaagttggcg aacagcccga
      601 cgcaaccgag gccgacgagg ctcagcacgc caaagtagcc gtagtgccag gtcagctccg
      661 gcatgtagtc gaagttcatc ccgtagatgc ccgccaccgc cgtgggaaac gccaggatcg
      721 ccgcccaggc ggcgaacttg cgctgggtca ggctctgccg cgaggactcc agcagcaggc
      781 cgatctcgat ggcgtggtcg gccatctcgc gcaggccggt gaggtcttcc agcaggcggt
      841 tgacgtggat ggcgatgtcg cggaaatacg gccgcatgtg cttgtcgatg aaggggaagt
      901 cgagctgctg cagctcctgg cagatctccg acagtggcgc cacctggcgg cgcaggcgca
      961 gcaggtcgcg gcgcagggcg tggatgcgct ccacgtccgc ctgggtcaag gggcggctga
     1021 gcaccgtctg ctcgatgtct tccagctcga cgtggatgca gtccagcagt ggccggtagt
     1081 tttcgatgac gaaggcgagc agggcataga gcacgaagtc ttcgccgtgc tccagcagca
     1141 gcggccgcgc ctcgcagcgc tggcgcacgg tggagtaagg cgcggagtcg ccgtagcggg
     1201 cgctgatcac atagcccttg ccggcgaaca gctgggtctc gacgaactcc aggcggccgt
     1261 tcgggcggcg gatcggcgag tacagcacca tgaacagggc gtcgccgaag atctccagct
     1321 tggggcgggt gtgctgggcg atggcgtctt ccatcgccag ttcgtgcagg tcgaactgct
     1381 gctgcagcac gctcagttcc gggctgccgg ggtcgcgcag gccgatccag acgaaatgat
     1441 cgggccgcgt ggcccaggtg cgcccctcgt cgagcgtgat gtcggcaacc ttcttgccct
     1501 tgtgatacgc ggcggcggca acgacctgac ccatggagtg tcctctgcgt ggcgatgccg
     1561 cagcttaacc caggacgtgg ctccggtagc aaaaggcccg gcgggagccg ggcctcgttc
     1621 agcgcgaggt gtcaggccgc ggccttggcc gcgacggcgc cgtcgagctg ctcgatgcac
     1681 tcgcgcatca tttgctggca gcgctccatc agttgcggca ggtcgtcc
//
LOCUS       DATIHC010000789         1740 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_1240, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000789 DATIHC010000000
VERSION     DATIHC010000789.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1740)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1740)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1740
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1240"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..244
                     /locus_tag="VLF16_13105"
     CDS             <1..244
                     /locus_tag="VLF16_13105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71860.1"
                     /translation="QVAEQIRLALESLGLTHAGSPWRRLSLSAGVNVCLPQPLGVVVN
                     GPDGLLQGADKALYAAKAAGRDRVVLYDEQVEQLIG"
     gene            complement(320..1012)
                     /locus_tag="VLF16_13110"
     CDS             complement(320..1012)
                     /locus_tag="VLF16_13110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015476222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HSX71861.1"
                     /translation="MKTIGLIGGMSWESTLPYYRHVNEAIKARLGGLHSAQLVLYSVD
                     FHEIEQLQRSGDWQRAGERLGEVAVALQRAGADFLVLCTNTMHKVAAAIEDASGLPLL
                     HIADPTAAAIRAAGLQRVGLLGTRFTMEQPFYRERLEQRHGIDVLVPDEADRDLVHRV
                     IYEELCLGTVREESRQAYRQIIERLVARGAQAVILGCTEIGLLVGEADAAVPLFDTTL
                     LHARAAADEALK"
     gene            1172..>1740
                     /locus_tag="VLF16_13115"
     CDS             1172..>1740
                     /locus_tag="VLF16_13115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016492395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HSX71862.1"
                     /translation="MSSRPLNVRPSYLHLPAGSWPTVLDCLCARFPQISRDTWLARMA
                     RGLVLDDQDRPLGPEAPYREALRVQYFREIENERKIPFQAQVLHLDAHLLVADKPHFL
                     PVMPAGDYAEETLLTRLVRETGNPHLAPLHRIDRHTAGLVLFSTTPASRGAYQALFRE
                     KRIDKRYQAIAPALPQHPFPLRHRSRLEKG"
BASE COUNT          246 a          646 c          587 g          261 t
ORIGIN      
        1 gcaggtggcc gaacagattc gtctggccct ggagagcctg gggctgacgc atgccggctc
       61 gccctggcgg cgcctgagcc tgagcgccgg agtcaacgtc tgcctgccgc agccgctcgg
      121 cgtggtggtg aacgggccgg acggcctgct gcagggcgcc gacaaggcgc tctacgccgc
      181 caaggccgcc ggccgcgacc gggtggtgct gtacgacgaa caggtcgaac agctgatcgg
      241 ctaggtctgc ggaccatcgg ccgcgccgca cggatgcggg ctgcggccgc tcaccaccgc
      301 gtccgatgcg tcggcgctgt tacttcagcg cctcgtccgc cgccgcccgc gcatgcagca
      361 gggtggtgtc gaacagcggc accgcggcat ccgcctcgcc gaccagcagg ccgatctcgg
      421 tgcagccgag gatcaccgcc tgggcgccgc gcgccaccag ccgctcgatg atctgccgat
      481 aggcctggcg cgactcctcg cgcacggtgc ccaggcacag ctcctcatag atcacccggt
      541 gcaccaggtc gcggtcggcc tcgtccggca ccagcacgtc gatgccgtgg cgctgttcca
      601 gacgctcgcg gtagaacggc tgctccatgg tgaagcgggt gccgagcagg ccgacgcgct
      661 gcagcccggc ggcgcggatc gccgcggcgg tcgggtcggc gatgtgcaac agcggcaggc
      721 cggaggcgtc ctcgatggcc gccgccacct tgtgcatggt gttggtgcag agcaccagga
      781 agtccgcgcc ggcgcgctgc agcgccaccg ccacctcgcc caggcgttcg ccggcacgct
      841 gccagtcgcc gctgcgctgc agctgttcga tctcgtggaa atccacgctg tacagcacca
      901 gctgggccga atgcaggccg cccaggcgcg ccttgatcgc ttcgttgacg tgacggtagt
      961 agggcagagt ggattcccag ctcatgccgc cgatcaggcc tatggtcttc atgagtgctc
     1021 ctcgggttgg cagcctatcc tgctccggcg cctcgcccgc cggcagtgac agcggcatgc
     1081 ggatcgaccc ctacagatgc ggggacgagc ggggcggcgt ttttcgccgc gctgaggaat
     1141 aatgcccggc cctgccgcca cgcccgccgc catgtcatcg cgcccgctca acgttcgccc
     1201 cagttatctg cacctgccgg ccggcagctg gcccaccgtg ctcgactgct tgtgcgcgcg
     1261 cttcccgcag atttcccgcg acacctggct ggcgcgcatg gcccgcggcc tggtgctgga
     1321 cgatcaggac cgccccctgg gccccgaggc gccctaccgc gaggcgttgc gggtgcagta
     1381 tttccgcgag atcgagaacg agcgcaagat tcccttccag gcccaggtgc tgcacctcga
     1441 cgcgcacctg ctggtggcgg acaagccgca cttcctgccg gtgatgccgg cgggcgacta
     1501 cgccgaggaa accctgctca cccgcctggt gcgcgagacc ggcaaccccc atctggcgcc
     1561 gctgcaccgc attgaccggc acaccgccgg gctggtgctg ttctccacca cgcctgccag
     1621 tcgtggcgcc taccaagcgc tgttccgcga gaagcgcatc gacaagcgct accaggccat
     1681 cgccccggcg ctgccgcagc acccgttccc gctgcgccac cgctcgcgcc tggagaaggg
//
LOCUS       DATIHC010000790         5567 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17446, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000790 DATIHC010000000
VERSION     DATIHC010000790.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5567
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17446"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..150
                     /locus_tag="VLF16_13120"
     CDS             <1..150
                     /locus_tag="VLF16_13120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002552854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine aminopropyltransferase"
                     /protein_id="HSX71863.1"
                     /translation="GYRKLPLETLRQRFAGSGIVTRYYNPEIHQGAFALPQYVLHAVN
                     KPSND"
     gene            complement(202..1209)
                     /locus_tag="VLF16_13125"
     CDS             complement(202..1209)
                     /locus_tag="VLF16_13125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSX71864.1"
                     /translation="MPRTSASVLLVPLLAGAPLAQAATPSYGEQLEGFDYPHPRQHFE
                     LQSQGQKLSMAYMDVAPKGKANGHTAVLLHGKNFCGATWEQTIATLSDKGYRVIAPDQ
                     IGFCASSKPRGYQFSFSQLALNTQALLDKLGVDKATVIGHSMGGMLAARFAINHPQTV
                     EQLVLVNPIGLEDWQAKGVPYASIDQLNQGELKTTYESIKNYQLKFYYNGQWKPEYDR
                     WVDMQVGLYHGKGREIVAWNQAQTADMLFSQPVIHEFGRIQAPTLLLIGGKDRTAPGA
                     NRAPKEIAERLGNYPELGREAAAALPKGTLVEFPELGHSPQVEAPERFHQALLKGLIT
                     M"
     gene            complement(1463..1813)
                     /locus_tag="VLF16_13130"
     CDS             complement(1463..1813)
                     /locus_tag="VLF16_13130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007154252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSX71865.1"
                     /translation="MHQHHGINYLEIPCRELEASKAFFAKVFGWTFTDYGPDYSCFLG
                     TGIDGGFFRSPLDFATDRGCPLIVLYSADLNASQNAVKEAGGRIVKPVFDFPGGRRFH
                     FADPSGNEYAIWSE"
     gene            complement(1845..2621)
                     /locus_tag="VLF16_13135"
     CDS             complement(1845..2621)
                     /locus_tag="VLF16_13135"
                     /inference="COORDINATES: protein motif:HMM:NF017085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAD domain-containing protein"
                     /protein_id="HSX71866.1"
                     /translation="MAKKHNPNPVDALVAALIGLQMTLQHARLRLEADTDAEALHDLR
                     VALRRLRSLLAPLRKAIDLGPLYDATRNLAKLTGPARDLEVLAAELERQGFAELARER
                     RAQLRDRHAAVLESVELERLLMLLDAWPEFLREAQREGQLRHFEKIVAHRLHKQMARL
                     RAALGTEGFDRHRLRLLIKRVRYACEAYPQLCTLGKHGRETLKRAQSALGDWHDHFQW
                     CRRIAREPDLTPLHTTWQQRAEASRRDADRQLQKLTRSLG"
     gene            2804..4843
                     /locus_tag="VLF16_13140"
     CDS             2804..4843
                     /locus_tag="VLF16_13140"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HSX71867.1"
                     /translation="MPSVDALQSHLRSHFAFTLASALLLMLMFAALRLALLNHNAELI
                     GETATGDLLEAFFNGARFDLRVVVYAVAPLLLSILSLRAMAARRAHVVWLSIVASLSL
                     LLGITELDFYREFHQRLNSLVFQYLEEDMGTVSSMLWHGFPVARYLLAWALGSLAMAM
                     LFRWIEHATRPRQARPAMAWYKRFGVFFLCLLVAVLAARGTIKQGPPLRWGDAFTTDS
                     IFANHLGLNGILTLVDAAENSFSDHRDNAWKSTLPDAEAQAVVRQMLLGEHDVLVDAD
                     SAAVRRDLTPPAAGTLPVKHVVVILMESFAGRWVGAMGSEAGITPNFDRLSEEGLLFT
                     RFFSNGTHTHQGMFATMACFPNLPSFEYLMRMPEGSHKFSGLPQQLSVRGYDDLYVYN
                     GNFQWDNQSGFFSNQGMRNFIGREDFVDPVFIDPTWGVSDQDMFDRGAAELAKLDPNK
                     PFYALLQTLSNHTPYALPEQLPVPPVTDRGSYNQHLTAMRYSDWALGQFFEKAKQSPY
                     YKDTLFVIVGDHGFGSPEQLTEMDLYRHNVPLLLIAPGIREQFGARRDTVGTQIDVVP
                     TIMGRLGGETRHQCWGRDLLNLAENDAGFGVIKPSGSDQTVAIVSGEKVLVQPKGLPA
                     KLYRYQLEERKVEVLKDDAQQPELQKRLEAFLQVATQSLLRNTTGVSDAAGAESR"
     gene            complement(4975..>5567)
                     /locus_tag="VLF16_13145"
     CDS             complement(4975..>5567)
                     /locus_tag="VLF16_13145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003128616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSX71868.1"
                     /translation="RDLSGMLQVLRELFHRDLPILRVELDLPQPADPRPFVEEIGVLP
                     RFERPHNRFVFPRHLLDLPLAGAHPQAAQLCEEQCQRLLAKRSQRDGLAGRIRALLLE
                     RPGRLPDMEQVAASLHMSSRTLRRRLDEEGSHFRLLLDEVRQALAEELLATGGLSLEE
                     IAERLGYGEVSNFIHAFKRWKGVAPRQFQRTAGDGV"
BASE COUNT          867 a         1884 c         1868 g          948 t
ORIGIN      
        1 ggctaccgca agctgccgct ggagaccctg cgccagcgtt tcgccggtag cggcatcgtc
       61 acccgctact acaacccgga gatccaccag ggcgccttcg ccttgccgca atacgtgctg
      121 cacgcggtga acaaaccgag caacgactga tagacgcgca gaaaaaaagc cggcgaaagc
      181 cggctttttt gtgggcccga cttacatcgt gatcaggccc ttgagcagcg cctggtggaa
      241 gcgctccggc gcctcgacct gcggcgaatg gcccagctcg gggaattcca ccagcgtgcc
      301 cttgggcagc gcggcggcgg cctcgcggcc cagctcgggg tagttgccga ggcgctcggc
      361 gatctctttc ggcgcgcgat tggcgcccgg cgcggtgcgg tccttgccgc cgatcagcag
      421 cagggtcggc gcctggatgc ggccgaactc gtggatcacc ggctggctga acagcatgtc
      481 ggcggtctgc gcctggttcc aggcgacgat ctcgcggccc ttgccgtggt agaggccgac
      541 ctgcatgtcc acccagcggt cgtactccgg cttccactgg ccgttgtagt agaacttcag
      601 ctgatagttc ttgatgctct cgtaggtggt tttcagctcg ccctgattca gctggtcgat
      661 gctggcgtag ggcacgccct tggcttgcca gtcctcgagg ccgatggggt tgaccagcac
      721 cagctgctcg acggtctgcg gatggttgat ggcgaagcgc gcggcgagca tgccgcccat
      781 ggagtggccg atcacggtgg ccttgtcgac gccgagcttg tccagcagcg cctgggtgtt
      841 cagcgccagc tggctgaagc tgaactggta accgcgtggc ttgctcgagg cgcagaagcc
      901 gatctggtcc ggcgcgatga cccggtagcc cttgtcgctg agagtcgcga tggtctgttc
      961 ccaggtcgcg ccgcagaagt tcttgccgtg cagcagcacc gcggtgtggc cattggcctt
     1021 gcctttcggc gccacgtcca tgtacgccat ggacagcttc tggccctgcg actgcagctc
     1081 gaagtgctgg cgtggatggg gatagtcgaa gccctccagc tgctcgccgt aactgggcgt
     1141 ggcggcctgg gcgaggggag cgccggccag cagcggaacg aggagaacag acgcgcttgt
     1201 cctgggcatt ggaacctcct gacagtggga aagcggcagt tgtatgacaa ccgtcccgaa
     1261 cgagaaagcc tcgcaatgtg ccggaatgtt tccgaggccc gatccagagc gctccgatga
     1321 gatcggacag caccgatccc ggggaagcga agcgccacat ggaggggcat gcgcaggtgc
     1381 gccgtgcatg ccacggaccg tgcatggtgc cgccgaatca cgcaaggtgc gcacagcgca
     1441 ccctacggcg tgctacgtgc ggttactcgg accagatcgc gtattcattg ccgctggggt
     1501 cggcgaaatg gaaacggcgg ccgccgggga agtcgaacac cggcttgacg atgcgtccgc
     1561 cggcctcttt caccgcgttc tggctggcat tgaggtcggc gctgtagagc acgatcagtg
     1621 ggcagccgcg gtcggtcgcg aagtccagcg gcgagcggaa gaagccgccg tcgatgccgg
     1681 tgccgaggaa gcagctgtag tccgggccgt agtcggtgaa ggtccagccg aagaccttgg
     1741 cgaagaacgc cttgctcgcc tcgagctcgc ggcaggggat ttccaggtag ttgatgccgt
     1801 ggtgctggtg catttcgtca ctccttcgtc gattcggggt cgggctagcc caggctgcgg
     1861 gtcagtttct gcagctgccg gtcggcatcg cggcgtgacg cctcggcgcg ctgctgccag
     1921 gtggtgtgca gcggcgtgag gtcgggctcg cgggcgatgc gccggcacca ctggaagtga
     1981 tcatgccagt cgccgagggc cgactgggcg cgcttgagcg tctcgcgccc atgcttgccc
     2041 agggtacaca gctgcgggta ggcctcgcag gcgtagcgca cgcgcttgat cagcagacgc
     2101 aggcggtggc ggtcgaagcc ctcggtgccc agggcggcgc gcagtcgcgc catctgtttg
     2161 tgcaggcgat gcgcaacgat cttctcgaag tggcgcagct ggccctcgcg ctgagcctcg
     2221 cgcagaaact ccggccaggc gtctaggagc atgagcaggc gctccagttc gacgctctcc
     2281 agcaccgcgg catgccgatc acgcagctgg gcgcgccgct cccgcgccag ctcggcgaag
     2341 ccctggcgct ccagttcggc cgccagtacc tccaggtccc gcgccggccc ggtcagtttc
     2401 gccaggttgc gcgtggcatc gtacagcggg cccaggtcga tggccttgcg cagcggtgcg
     2461 agcaggctgc gcaaacgccg cagcgccacc cgcaggtcgt gcagggcctc ggcatcggta
     2521 tcggcctcca ggcggagacg ggcgtgctgc aaggtcatct gcaggccgat cagcgcggcc
     2581 accagtgcat cgaccgggtt cgggttgtgc ttcttggcca tgggctcctt ctcgtcgctc
     2641 tgggggtgat ccgggcagtg tgcccggcag gcacacagcg tagcggccgg aatgccgcct
     2701 gctcatcctg accgctgcgg caggtatcag tgccgattcg acagaatttt cacctgtcgc
     2761 ggacgaatat cgccgccctc ccaattccgg actccatttc gtcatgcctt cagtggacgc
     2821 cctgcaatcc catctgcgaa gtcacttcgc cttcacccta gccagcgcgc tgctgctgat
     2881 gctgatgttc gccgcgctgc gcctggccct gctcaatcac aacgccgagc tgatcggcga
     2941 gaccgccacc ggcgacctgc tcgaggcctt cttcaacggc gcgcgcttcg acctgcgcgt
     3001 ggtggtctat gccgtcgcgc cgctgctgct gtcgatcctc agcctgcgcg ccatggccgc
     3061 gcgccgcgcc catgtggtgt ggctcagcat cgtcgccagc ctcagcctgc tgctcggcat
     3121 caccgaactg gacttctacc gcgagttcca ccagcgcctg aacagcctgg tgttccagta
     3181 cctggaagag gacatgggta cggtgtcgag catgctctgg cacggtttcc cggtggcccg
     3241 ctacctgctg gcctgggcgc tgggcagcct ggccatggcc atgctgttcc gctggatcga
     3301 acacgccacc cggccgcgcc aggcgcgccc ggccatggcc tggtacaagc gcttcggcgt
     3361 gttcttcctg tgcctgctgg tggcggtgct cgccgcccgc ggcacgatca agcagggccc
     3421 gccgctgcgc tggggcgatg ctttcaccac cgattcgatc ttcgccaacc atctgggcct
     3481 gaacggcatc ctcaccctgg tcgatgccgc cgagaacagc ttctccgatc accgcgacaa
     3541 cgcctggaaa tcgaccctgc cggacgccga ggcgcaggcc gtggtgcggc agatgctgct
     3601 gggcgagcac gacgtgctgg tggatgccga tagcgccgcg gtgcgtcgcg acctcacgcc
     3661 gccggccgcc ggcaccctgc cggtcaagca tgtggtggtc attctgatgg agagttttgc
     3721 cggtcgctgg gtcggcgcca tgggcagcga ggccggcatc acgccgaact tcgaccgcct
     3781 gagcgaggag ggcctgctgt tcacccgctt cttctccaac ggcacccaca cccaccaggg
     3841 catgttcgcc accatggcct gcttccccaa cctgccgagc ttcgagtacc tgatgcgcat
     3901 gcctgagggc agccacaagt tctccggcct gccgcagcag ctcagcgtgc gcggctacga
     3961 cgacctgtac gtctacaacg gcaacttcca gtgggacaac cagtccggct tcttcagcaa
     4021 ccagggcatg cgcaacttca tcggtcgcga ggacttcgtc gacccggtgt tcatcgaccc
     4081 gacctggggc gtgtccgacc aggacatgtt cgaccgcggc gcggccgagc tggccaagct
     4141 ggacccgaac aagccgttct acgcgctgct gcagaccctt tccaaccaca cgccctacgc
     4201 gctgccggag cagttgccgg tgccgccggt gaccgaccgc ggctcctaca accagcacct
     4261 caccgccatg cgctactcgg actgggcgct gggccagttc ttcgagaagg ccaagcagtc
     4321 gccgtactac aaggacaccc tgttcgtgat cgtcggcgac cacggcttcg gcagtcccga
     4381 gcagctcacc gagatggacc tgtatcgcca caacgtgccg ctgctgctga tcgctccggg
     4441 catccgtgag cagttcggcg ctcgccgcga caccgtcggc acgcagatcg acgtggtgcc
     4501 gaccatcatg ggccgactcg gcggcgagac ccgtcaccag tgctggggcc gcgacctgct
     4561 gaatctggcg gagaacgacg ccggtttcgg cgtgatcaag ccgtccggca gcgaccagac
     4621 ggtggccatc gtcagcggcg agaaggtgct ggtgcagccc aagggcctgc cggccaagct
     4681 ctatcgctac cagctggaag agcgcaaggt cgaggtgctg aaggacgacg cccagcagcc
     4741 ggagctgcag aagcgcctgg aagccttcct gcaggtcgcc acccagagcc tgctgcgcaa
     4801 caccacgggc gtcagcgatg ccgccggggc ggagtcgcgc tagcgtctcc gctcgcgact
     4861 agcgcccacg taatacgctc catgtagggt ggcctcgccg cgcagcggca gcccaccatc
     4921 cgaacctcac cgtcgcgcac agcctcgtcg gcgcactgcc ttcggcgagg gcgcctacac
     4981 gccatctccc gccgtgcgct ggaactggcg gggcgccacg cctttccagc gcttgaaggc
     5041 gtggatgaag ttggatacct ctccgtagcc gaggcgctcg gcgatctcct ccaggctcag
     5101 gccgccggtg gccagcagct cttcggccag ggcctggcgc acttcgtcca gcagcaggcg
     5161 gaagtggctg ccttcctcgt ccaggcgccg gcgcaaggtg cgcgagctca tgtgcaggct
     5221 ggcggcgacc tgttccatgt ccggcagccg gccgggtcgc tccagcagca gcgcgcggat
     5281 gcgcccggcc aggccgtcgc gctggctgcg cttggccagc aggcgctggc actgttcctc
     5341 gcacagctgc gccgcctgcg ggtgcgcgcc ggccagcggc aggtcgagca ggtggcgggg
     5401 gaagacgaag cggttgtgcg ggcgctcgaa ccgcggcagc acgccgatct cctcgacgaa
     5461 gggccgtggg tcggccggct gcggcaggtc cagctccacc ctcaggatcg gcagatcgcg
     5521 gtgaaacagc tcgcgcagca cctgcagcat gccggacaga tcgcgct
//
LOCUS       DATIHC010000791         5365 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30223, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000791 DATIHC010000000
VERSION     DATIHC010000791.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5365
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30223"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..274)
                     /locus_tag="VLF16_13150"
     CDS             complement(<1..274)
                     /locus_tag="VLF16_13150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008435731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HSX71869.1"
                     /translation="MNGLKTLLAASILATAGIVPAFAADRPEVVLVHGAFADGSSWNK
                     VIPLLQQKGIDVISVQNPLSSLGDDVAAARRAIEQAGGDVVLVGHSW"
     gene            complement(316..570)
                     /locus_tag="VLF16_13155"
     CDS             complement(316..570)
                     /locus_tag="VLF16_13155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015278637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2790 domain-containing protein"
                     /protein_id="HSX71870.1"
                     /translation="MKLNSLIACAGLLVILGGASIAQADNSETYRYGMALDIDKVLSI
                     EVPAAPYCTVVTAHMTYVDSRGEVRGLDYQTQAEACEVSG"
     gene            761..1501
                     /locus_tag="VLF16_13160"
     CDS             761..1501
                     /locus_tag="VLF16_13160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX71871.1"
                     /translation="MEHVDHVLVVDDDREIRELVGNYLKKNGLRVSLAADGRQMRAFL
                     EGNAVDLIVLDIMMPGDDGLKLCRELRVGKHRATPVLMLTARNEETDRIIGLEMGADD
                     YLTKPFSARELLARINAVLRRTRMLPPNLQISESSRLIGFGHWRLDTSARHLLDETDT
                     VVALSGAEYRLLRVFLDHPQRVLSREQLLNLTQGREADVFDRSIDLLVSRLRQRLLDD
                     AREPAYIKTVRSEGYVFSLPVQLIEPKP"
     gene            1498..2805
                     /locus_tag="VLF16_13165"
     CDS             1498..2805
                     /locus_tag="VLF16_13165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015475988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HSX71872.1"
                     /translation="MTSLLRWPRSLAARLTLIFLTGLVLAYGLSFGSQFYERYLTGRD
                     VMLDNLEMDLSTSVALIDRLPPEERASWLPLLERRNYRYRMDQGLPGTPMDMTDPPMA
                     VSSIERAIGERHALRFVTLEGPRPHFQVHIRLSDGRPLVLDVTPGSVPVAQWLPLMLV
                     VQLLVLLLCTWLAVRTAIRPLTHLASAVDHLDPDSPAPPLDERGPTEVQYAARAFNAL
                     QGRIAAYLKERMQLLAAISHDLQTPITRMKLRVEQMDESPERERLWSDLNEMQHLVRE
                     GVAYARSMDGSREALCRVDLDAFLDSLVLDYQDSGQAVTLDGRSGALIETRPHALRRV
                     LSNLLDNALKFAGSAELKVERDARGVRLLILDEGPGIAEAELEEVFKPFYRVESSRNR
                     STGGTGLGLAIALQLSQALGARLSLRNREHGGLCAELALTVTG"
     gene            2926..3576
                     /locus_tag="VLF16_13170"
     CDS             2926..3576
                     /locus_tag="VLF16_13170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012074335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71873.1"
                     /translation="MTRSEPSPSLHGWGLFSLLSLLVLVATALALLWQPQLVEALRSA
                     IRVTARTSFALFLIAFLASSLAFLLPSPTTRALLRERRYFGLAFAFSHLIHGVLILTY
                     AKLFPEVFWNGRSAAANIPGSVGYLFILLLSLTSFRWAMKALGGRGWKLLHGTGTWVL
                     AAIFCLSFYKRIPMSPWYALGFALIFSAIVLKLVAKLAQRLRREAQPARAPLATAR"
     gene            3584..4075
                     /locus_tag="VLF16_13175"
     CDS             3584..4075
                     /locus_tag="VLF16_13175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016492937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HSX71874.1"
                     /translation="MYATAFAPLKNAFARLDRLGAWSADLPLRLFLAWEFLEAGLEKW
                     NGQNWFAQLQFPFPFDLLPAGLNWQLSMWIELIAPLLLLLGLGTRLASATLIVLTVVA
                     IAAVHWPAHWSSLAELALGYSISDHGHGNYKLPLIYLVALLPLLLGGAGRLSLDALLH
                     RKA"
     gene            complement(4138..4884)
                     /locus_tag="VLF16_13180"
     CDS             complement(4138..4884)
                     /locus_tag="VLF16_13180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003449505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding domain-containing protein"
                     /protein_id="HSX71875.1"
                     /translation="MAEALHEQLLRMARHVRDPQRHAPPPGIEARRLAVYRQLFFGNL
                     ESLLSGAFPVARASLGAERWQALVQAFYADYRCRTPLFTELAGEFVDYLEAGAAPDAP
                     EWLAELTHYERVESVLLLSDAAEPEHEPRGDLLEGVPVLSPLALPLAYRWPVAEIGPG
                     HLPQAAPEQPTLILARRGADRRVHFSRLAPLAHALLLSLQERAVSGAEHLALLAEAIG
                     VAPEQIVPAGLALLEDLRAQGVVLGTRPGA"
     gene            complement(4877..>5365)
                     /locus_tag="VLF16_13185"
     CDS             complement(4877..>5365)
                     /locus_tag="VLF16_13185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003449507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF692 family protein"
                     /protein_id="HSX71876.1"
                     /translation="AVHHVAARIRQAQDVLGRRIAVENVSYYAAPYQALSEIDFLRAV
                     LGEADCDLLLDVNNLFVNAINHGYDAQRYLAAISAERVVCLHVAGHYDEAPDLKIDTH
                     GAAVKGDVWALLAQAYARFGAVPTLLERDFNFPPLAELLTEVEQIRGYQRAARLPEVR
                     HG"
BASE COUNT          807 a         1930 c         1811 g          817 t
ORIGIN      
        1 cccaggagtg gccgaccagc accacatcgc cgccggcctg ctcgatggcc cggcgcgcgg
       61 cggccacgtc gtcgcccagc gagctgagcg ggttctgtac cgagatgacg tcgatcccct
      121 tctgctgcag cagcgggatc accttgttcc agctgctgcc gtcggcgaag gcaccgtgga
      181 ccagtaccac ctccggcctg tcggcggcga aggccggcac gataccggcg gtggcgagga
      241 tggaggcggc gagcagggtc ttgaggccgt tcatgggtgt tctcctgaag tcgatgggtg
      301 ggtgggcggc ggcgatcagc cgctgacctc gcaggcctct gcctgggtct ggtagtcgag
      361 gccgcgcacc tcgccccggg agtcgacgta ggtcatgtgc gccgtgacca cggtgcagta
      421 cggcgccgcc ggcacctcga tggagagcac cttgtcgatg tccagcgcca tgccgtagcg
      481 gtaggtctcg gagttgtcgg cctgggcgat ggaggcgccg ccgaggatga cgagcagacc
      541 ggcgcaggcg atgagggaat tgagtttcat ggtggattcc tctgtggttg attgacggtg
      601 gccattcaac ggcgaggagg tatccgcggt gtgtcgcccg cgggcgccag ggtatgggcg
      661 tgtgtcggtg gcgcgcggga tacagtgcaa tacaaagcgc gcgagcattg ccggcggcgc
      721 tggatagaat gcacgcagtc accattaccg aggcgctggc atggagcatg tcgatcacgt
      781 cctggtcgtc gacgacgacc gggaaatccg cgaactggtg ggcaactacc tgaagaagaa
      841 tggcctgcgc gtgagcctgg ccgccgatgg ccggcagatg cgcgccttcc tcgaaggcaa
      901 cgcggtggac ctgatcgtgc tcgacatcat gatgcccggc gacgacggcc tgaagctgtg
      961 ccgcgagctg cgcgtgggca agcacagggc cacgccggtg ctgatgctca ccgcgcgcaa
     1021 cgaggagacc gaccgcatca tcggcctgga gatgggtgcc gacgactacc tgaccaagcc
     1081 cttctccgcc cgcgagctgc tggcgcggat caacgccgtg ctgcgtcgca cgcgcatgct
     1141 gccgcccaac ctgcagatca gcgagagcag ccggctgatc ggcttcggcc actggcgcct
     1201 ggacaccagc gcccgccacc tgctggacga aaccgacacg gtggtcgccc tcagcggcgc
     1261 cgagtaccgc ctgctgcggg tgttcctcga ccatccgcag cgggtgctga gccgcgaaca
     1321 gctgctcaac ctgacccagg gccgcgaggc cgacgtgttc gaccgctcca tcgacctgct
     1381 ggtgagccgc ctgcgccagc gcctgctcga cgatgcccgt gagccggcct acatcaagac
     1441 ggtgcgcagc gagggctatg tgttctcgct gcccgtgcag ctgatcgagc ccaagccatg
     1501 acgtccctgc tccgctggcc gcgcagcctg gccgcgcgcc tcacgctgat cttcctcacc
     1561 ggcctggtgc tggcctacgg cctgtcgttc ggctcgcagt tctacgagcg ctacctgacc
     1621 gggcgcgacg tgatgctcga caacctggag atggacctga gcacctcggt ggcgctgatc
     1681 gaccgcctgc cgcccgagga acgcgccagc tggctgccgc tgctggaacg gcgcaactac
     1741 cgctaccgca tggaccaggg cctgcccggc acgccgatgg acatgaccga cccaccgatg
     1801 gccgtgtcgt ccatcgagcg ggccatcggc gagcgccatg cgctgcgctt cgtcaccctc
     1861 gaggggccgc gcccgcactt ccaggtgcat atccgcctca gcgacggccg cccgctggtg
     1921 ctggacgtca cccccggcag cgttccggtg gcccagtggc tgccgctgat gctggtggtg
     1981 cagttgctgg tgctgctgct ctgcacctgg ctggcggtgc gcacggcgat tcgcccgctg
     2041 acccatctgg ccagcgccgt ggaccacctg gacccggaca gcccggcgcc gcccctggat
     2101 gagcgcggcc cgaccgaggt gcagtacgcg gcccgcgcct tcaacgccct gcagggccgc
     2161 atcgccgcct acctgaagga gcgcatgcag ctgctggcgg ccatctccca cgacctgcag
     2221 acgccgatca cacgcatgaa gctgcgcgtc gaacagatgg acgagtcgcc ggagcgcgag
     2281 cgcctgtgga gcgacctcaa cgagatgcag cacctggtgc gcgagggcgt ggcctacgcg
     2341 cgcagcatgg acggcagccg cgaggcgctg tgccgggtcg acctggacgc cttcctcgac
     2401 agcctggtgc tcgactacca ggacagcggc caggcggtaa cgctggacgg ccgcagcggc
     2461 gcgctgatcg agacccgtcc ccacgccctg cgccgggtgc tgagcaacct gctggacaac
     2521 gccctgaagt tcgccggcag cgccgagctg aaggtggagc gcgatgcgcg cggcgtgcgc
     2581 ctgctgatcc tggacgaggg ccccggcatc gccgaggcgg agctggagga agtgttcaag
     2641 ccgttctacc gggtggaaag ctcgcgcaac cgcagcaccg gcggcaccgg cctgggcctc
     2701 gccatcgccc tgcagctgag ccaggccctg ggcgcgcgcc tgagcctgcg caaccgcgag
     2761 cacggcggcc tgtgcgccga actggcactc actgtaacgg gctgaggcga ggatacagag
     2821 cgatacagga cggccgcgca cggacacacg ggagacaaag cggctggcga gcatgacggg
     2881 caacgcggcg cacaacgcgc cgcgcccctc ccaaggagcc cgcccatgac ccgatccgaa
     2941 ccctcaccca gcctgcacgg ctggggcctg ttcagcctgc tgtcgctgct cgtcctcgtc
     3001 gccaccgcgc tggccctgct ctggcaaccg cagttggtgg aggcgctgcg cagcgccatc
     3061 cgcgtcaccg cccgcacttc gttcgcgctg ttcctgatcg ccttcctcgc ctcgtccctg
     3121 gccttcctgc tgcccagccc gacgacccgc gcactgctgc gcgagcgccg ctacttcggc
     3181 ctggccttcg ccttctcgca cctgatccac ggcgtgctga tcctgaccta cgcgaagctg
     3241 ttccccgagg tgttctggaa cggccgctcg gccgccgcca acatccccgg ctcggtgggc
     3301 tacctgttca tcctgctgct cagcctcacc tcgttccgct gggcgatgaa ggccctcggc
     3361 gggcgtggct ggaagctgct gcacggcacc ggcacctggg tgctggcggc gatcttctgc
     3421 ctgtcgttct acaagcgcat cccgatgagc ccgtggtacg cgctgggctt cgccctgatc
     3481 ttctccgcca tcgtgctcaa gctcgtcgcc aagctggccc agcgtctgcg ccgcgaggcg
     3541 cagccggccc gcgcaccgct cgccactgcc cgctgaggtc accatgtacg ccaccgcatt
     3601 cgccccgctg aaaaacgcct tcgcccgcct cgaccgcctc ggcgcctgga gcgccgacct
     3661 gccgctgcgc ctgttcctcg cctgggaatt cctcgaggcc ggcctggaga aatggaacgg
     3721 gcagaactgg ttcgcccagc tgcagttccc cttccccttc gacctgctgc cggccgggct
     3781 gaactggcaa ctgtcgatgt ggatcgagct gatcgcaccg ctgctcctgc tgctcggcct
     3841 gggcacgcgc ctggcatcgg cgacgctgat cgtcctgacc gtcgtggcca tcgccgccgt
     3901 gcattggccg gcgcactggt cgagcctggc ggaactggcc ctgggctact cgatcagcga
     3961 ccacggccat ggcaactaca agctgccgct gatctacctg gtcgccctgc tgccgctgct
     4021 gctcggcggt gccggccgcc tgagcctgga cgccttgctg caccgcaagg cctgatccgc
     4081 gcaacaaaaa aagcccgcgc acctcgacag gtgcgcgggc tttttcatgc ttgccgttca
     4141 ggcgccgggg cgagtcccca gcaccacgcc ctgggcgcgc aggtcctcca gcaacgccag
     4201 cccggccggc acgatctgct ccggcgccac gccgatggcc tcggccagca gcgccaggtg
     4261 ctcagcgccg ctgacagcgc gctcctgcag cgacagcagc agcgcatggg ccaacggcgc
     4321 caggcgcgag aagtgcacgc gccgatcagc gccgcgtcgg gccaggatca gcgtcggctg
     4381 ctccggcgcc gcctgcggca ggtggcccgg gccgatctcc gccaccggcc agcgatacgc
     4441 cagcggcagg gccagaggcg acagcaccgg cacgccctcg agcaggtcgc cacgcggctc
     4501 gtgctccggc tccgcggcgt cgctgagcaa cagcacgctc tccacccgct cgtaatgggt
     4561 cagctccgcc agccactcgg gcgcgtcggg cgccgcgccc gcttccaggt agtcgacgaa
     4621 ctcgccggcc agctcggtga acagcggcgt gcgacagcgg taatcggcgt agaaggcctg
     4681 caccagtgcc tgccagcgct ccgcacccag gctcgcccgt gctacgggga aggcaccgga
     4741 cagcagcgat tcgagattgc cgaagaacag ctgccggtag accgccaggc gccgcgcctc
     4801 gatgcccggt ggcggcgcgt ggcgctgcgg gtcgcgcacg tggcgggcca tgcgcagcag
     4861 ttgctcgtgc agggcctcag ccatggcgca cctccggcag ccgggcggcg cgctggtagc
     4921 cgcgaatctg ctcgacttcg gtcagcagct cggccagtgg cggaaagttg aagtcccgct
     4981 ccagcagcgt cggcaccgcg ccgaagcgcg cgtaggcctg cgccagcagc gcccacacat
     5041 cgcccttcac ggcggcgccg tgggtgtcga tcttcaggtc cggggcctcg tcgtaatgtc
     5101 cggccacgtg caggcacacc acccgctcgg cggaaatcgc cgcgaggtag cgctgcgcgt
     5161 catagccatg attgatggcg ttgacgaaca ggttgttgac gtccagcagc aggtcgcagt
     5221 cggcctcgcc cagtactgca cgaaggaagt cgatctcgct cagcgcctgg tagggcgccg
     5281 cgtagtagga aacgttttcc accgcaatgc gccggcccag cacgtcctgg gcctggcgga
     5341 tgcgcgcggc cacgtggtgc acggc
//
LOCUS       DATIHC010000792         3257 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_45412, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000792 DATIHC010000000
VERSION     DATIHC010000792.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3257
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45412"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            77..1018
                     /locus_tag="VLF16_13190"
     CDS             77..1018
                     /locus_tag="VLF16_13190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003284557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triacylglycerol lipase"
                     /protein_id="HSX71877.1"
                     /translation="MNNKKTLLALCVGTSLLLAGHANAGLFGSTGYTKTKYPIVLTHG
                     MLGFDSILGVDYWYGIPSSLRSDGASVYITEVSQLNTSELRGEELLDQVEEIAAISGK
                     GKVNLVGHSHGGPTVRYVAAIRPDLVASVTSVGAPHKGSDTADFLRQIPPGSAGEALL
                     AGIVNGLGTLINFLSGSPSDAPQNSLGSLESLNSQGAAVFNAKYPQGIPTSACGEGAY
                     KVNGVAYYSWSGTSPLTNFLDVSDLLMGASSLTFDEPNDGLVGRCSSHLGKVIRDNYR
                     MNHLDEVNQTFGLTSLFETDPVTVYRQQANRLKMAGL"
     gene            1073..2104
                     /locus_tag="VLF16_13195"
     CDS             1073..2104
                     /locus_tag="VLF16_13195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipase secretion chaperone"
                     /protein_id="HSX71878.1"
                     /translation="MNKPLLLTVPLLIGAGIAATLYFNPIETHQPKAPRPTPTATPEP
                     MAPPQPESGAPAPSALTADIAPLPPSFAGTEVDGQFRLDEAGNLLISMDIRRIFDYFL
                     SAYGEESIKASVDRLQAYIRSQLDEPAEGQALALLEQYLDYKRQLIQLEKDLPQMASL
                     DAMRQREMAVQGLRAGIFSPEAHRAFFAQEEAYNQFTLQRLAIRHDRSLSDLEKTEAM
                     DRLRAGLPQELQEMAAPQLQAELRQQTAALQAQGASPTQIQQLRLQLVGAEATARLEA
                     LDQRRQQWQQRLDEYRREKARIEANGGLSEDDRRTAIASLAQERFDERERLRLEAAEH
                     LAESREKKR"
     gene            complement(2154..2588)
                     /locus_tag="VLF16_13200"
     CDS             complement(2154..2588)
                     /locus_tag="VLF16_13200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012075250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HSX71879.1"
                     /translation="MSNLITRLMSSNAGYGITLLRIVTGFTFAAHGAQKLFGWFGGYG
                     LEGVGQWMESIGLTPGYLMAALAGSAEFFGGLALVVGLLVRPAAVSLLIAMVVAAATV
                     HWANGFFITSNGFEYAMILGLISAVLVIEGAGKLSLDRAIAR"
     gene            complement(2699..>3257)
                     /locus_tag="VLF16_13205"
     CDS             complement(2699..>3257)
                     /locus_tag="VLF16_13205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003101674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HSX71880.1"
                     /translation="SYKVRNPTARADRQRLERVRSVLQKHGDKQDLDWLQLAAVAYKE
                     STLNPAARGASGATGLMQITPAAARSVGVGNIQALDNNVLAATRYMARIRREFFASRQ
                     IAESERMAFVLAAYNMGPQRVQGLRAEARRRGLDANRWFFQVERVAAEQLGMGVVSYV
                     NAVNKYYLAYDRERYLLDPSLGGSK"
BASE COUNT          617 a         1125 c         1012 g          503 t
ORIGIN      
        1 gtaccagttc caggaaggaa gtggatggct gacgcaagga cggatcactg cctaccccac
       61 cgttcgagag cgctacatga ataataagaa gaccctgctc gccctctgtg tcggaaccag
      121 cctcctgctg gccggccacg ccaatgccgg cctgttcggc tccaccggct acaccaagac
      181 caagtacccg atcgtgctga cccacggcat gctgggtttc gacagcatcc tcggcgtcga
      241 ttactggtac ggcattccct cctcgctgcg ctcggacggc gccagcgtct acatcaccga
      301 agtcagccag ctgaacactt ccgaactgcg cggcgaagag ctgctcgacc aggtggaaga
      361 aatcgccgcc atcagcggca agggcaaggt caatctggtc ggccatagcc atggcggccc
      421 caccgtgcgc tacgtcgccg ccatccgccc ggacctggtc gcctcggtca ccagcgtcgg
      481 cgcgcctcac aagggctcgg acaccgccga cttcctgcgc cagatcccgc cgggctccgc
      541 tggcgaagca ctgctcgccg gcatcgtcaa tggcctgggc acgctgatca acttcctctc
      601 cggcagcccg agcgatgcgc cgcagaattc cctcggctcc ctcgagtcgc tcaacagcca
      661 gggcgcggcg gtgttcaacg ccaagtaccc gcagggcatt ccgaccagcg cctgcggtga
      721 gggcgcctac aaggtcaacg gcgtcgccta ctactcgtgg agcggcacca gcccgctgac
      781 caacttcctc gacgtcagcg acctgctgat gggcgcgagc tccctgacct tcgacgagcc
      841 caacgacggc ctggtcggcc gttgcagctc ccacctgggc aaggtgatcc gcgacaacta
      901 ccggatgaac cacctggacg aggtcaacca gactttcggc ctcaccagcc tgttcgagac
      961 cgacccggtc accgtgtatc gccagcaggc caaccgcctg aagatggccg gcctctgagc
     1021 cacgaatcgg ggcccgtcgg gccccgatgt ttttctcctg ccgagtcccg ccgtgaacaa
     1081 gcccctgctc ctgaccgtgc ccctgctgat cggggccggc atcgccgcga ccctgtactt
     1141 caaccccatc gaaacccacc agccgaaagc gccacgcccg acacccacgg cgacgcccga
     1201 gccgatggca ccgccgcaac cggagagcgg cgctccggcg ccgtcggcgc tgaccgccga
     1261 catcgcccca ctgccgccct ccttcgccgg caccgaggtc gatggccagt tccgcctcga
     1321 cgaggccggc aacctgctga tcagcatgga tatccggcgc atcttcgact acttcctcag
     1381 cgcctatggc gaggagagca tcaaggccag cgtcgatcgc ctgcaggcct atatccgcag
     1441 ccagctcgac gaacctgccg agggccaggc cctggccctg ctggagcagt atctggacta
     1501 caagcgtcag ttgatccagc tggaaaaaga cctgccgcag atggccagcc tggacgccat
     1561 gcgccagcgc gaaatggcag tgcagggtct gcgcgccggc atcttcagcc ccgaggcgca
     1621 tcgcgccttc ttcgcccagg aagaggccta caaccagttc accctgcagc gcctggccat
     1681 ccgccacgac cgctcgctga gtgacctgga gaagaccgag gcgatggatc gtctgcgcgc
     1741 cggcctgccg caggagctac aggaaatggc cgcgccacaa ctgcaggccg agctgcgcca
     1801 gcagaccgcc gcgctgcagg cccagggcgc gagcccgacg cagattcagc agttgcgcct
     1861 gcaactggtc ggcgccgaag ccaccgcgcg tttggaggca ctggaccagc gtcgccagca
     1921 gtggcaacag cgcctcgacg agtaccgccg ggaaaaggcg cggatcgaag ccaatggggg
     1981 cttgagcgag gacgaccgtc gcacggcgat cgccagcctc gcgcaggaac gtttcgacga
     2041 gcgcgagcgc ctgcgtctgg aggccgcgga gcacctggcc gaaagccgtg agaaaaaacg
     2101 ctgaatgtga aaaggcccgc gatggcgggc ctttgactgc agcaggatga ggatcagcgg
     2161 gcgatggcgc gatccagaga cagcttgccg gcgccttcga tgaccagcac cgcgctgatc
     2221 aggccgagga tcatggcgta ctcgaagccg ttgctggtga tgaagaagcc gttggcccag
     2281 tgcacggtgg ccgctgccac caccatggcg atcaacaggg acacggccgc cggacgcacc
     2341 agcaggccga ccaccagggc caggccgccg aagaactcgg cgctgccggc cagggcggcc
     2401 atcaggtagc ccggggtgag gccgatgctc tccatccact gcccgacgcc ttccagaccg
     2461 taaccgccga accagccgaa cagtttttgc gcgccatggg cagcgaaggt gaagccggtg
     2521 acgatgcgca ggagggtgat gccgtagccg gcgttggagg acatcagtcg ggtgatcagg
     2581 ttgctcatgt gccagttcct tgtggaggag atgtgggtgt gtgtgtgagg cacatattat
     2641 tcgaaattta cgatcttgaa agcgcaaata agcgctaaat tcaatcgaat aaatagattt
     2701 atttagagcc acccaggctt gggtccaaca gatagcgttc gcgatcatag gccaggtagt
     2761 acttgttcac cgcgttgacg tagctgacca cgcccatgcc cagctgctcc gcggccacgc
     2821 gctcgacctg gaagaaccag cgattggcat cgaggccgcg ccggcgggct tccgcacgca
     2881 ggccctgcac ccgctgcggt cccatgttgt acgcagccag cacgaaggcc atgcgctcgc
     2941 tctcggcgat ctgccggctg gcgaagaatt cgcgacggat gcgtgccatg tagcgagtgg
     3001 cggccagcac gttgttgtcc agcgcctgga tgttgccgac gcccacgctg cgcgccgccg
     3061 caggcgtgat ctgcatcagc ccggtggccc cggaggcacc gcgcgccgcc gggttcagcg
     3121 tggactcctt gtaggccacc gccgccagct gcagccagtc gagatcctgc ttgtcgccgt
     3181 gcttctgcaa cacgctgcgt acccgctcca ggcgctgacg gtcggcgcgg gccgtgggat
     3241 tacgcacctt gtaggaa
//
LOCUS       DATIHC010000793         2963 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4502, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000793 DATIHC010000000
VERSION     DATIHC010000793.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2963)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2963
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4502"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1186)
                     /locus_tag="VLF16_13210"
     CDS             complement(<1..1186)
                     /locus_tag="VLF16_13210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011914656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1631 family protein"
                     /protein_id="HSX71881.1"
                     /translation="MKTDAKVVHLNKVAPEQSPTSPAGRLPVALIQVRDKAAQQLKQA
                     LQGLFDNADDTLFEMADRAASNTEQNAFFEAMRDLRLKRKTIERSFLQKVFESFSTLN
                     QYEIGSPAPQLGAVSFESLSLVQDDVLEESVALDAMVSRVMSRDGVALGHLTTRLNAM
                     ISKKLEDKTNPLGPRMLCEQFLASCEGLGVEIRVKLIILKLFEKYVLGDLDQLYANAN
                     QQLVEAGVLPELKSAPPARRQQGRSQGTSRASRDDSVEARGGQSAGYADEDVQEVFGA
                     LQELLSQVRGSAVLPRREMPADAVPISSNDLMRLLSHMQQHFPVGSQQVALDYDLRNQ
                     LEGLLARASAKSGKARVVGEVDEDVINLVAMLFEFILDDRTLPDSLKALIGRLQIPML
                     KVA"
     gene            1475..2323
                     /gene="nadC"
                     /locus_tag="VLF16_13215"
     CDS             1475..2323
                     /gene="nadC"
                     /locus_tag="VLF16_13215"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0019363 - pyridine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HSX71882.1"
                     /translation="MANLILADLGAEIEANVRAALREDIGSGDITAQLIPAERLAHAT
                     VITREAAVICGTAWVEAVFRQLDPRVIVHWQVADGDRVEPDQALFHLEGPARALLSGE
                     RSALNFLQTLSAVATRCRHFADLIEGTQVRLLDTRKTLPGLRLAQKYAVTQGGCHNHR
                     IGLYDAFLIKENHIAACGGIAQAISTAHGIAPGKPVEIEVESLEELREALDAGADIVM
                     LDELSLDDMRTAVSLTAGRAKLEASGGINETTLRTIAETGVDYISIGSLTKDVKAIDL
                     SMRLSL"
     gene            complement(2380..2452)
                     /locus_tag="VLF16_13220"
     tRNA            complement(2380..2452)
                     /locus_tag="VLF16_13220"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2417..2419),aa:Thr,seq:cgt)
     gene            complement(2495..>2963)
                     /locus_tag="VLF16_13225"
     CDS             complement(2495..>2963)
                     /locus_tag="VLF16_13225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003242742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSX71883.1"
                     /translation="AMAVQPRLLILDEPLSGLDPVGRKDVVEILNEYKQQGGAIFFTS
                     HVLHDVERIADRFGFINKGELLTVRSPRELAAERADTLLVRFNVVEGFAPQAKRLREG
                     EFELQVTQAQLPELIARLNMAGGRILTVKPAVSLETVFFKILEESAHKPEVRA"
BASE COUNT          610 a          955 c          879 g          519 t
ORIGIN      
        1 cggcgacctt gagcatcggg atctgcaggc ggccgatcag ggccttgagc gaatccggca
       61 gggtacggtc atcgaggatg aactcgaaca gcatggcgac caggttgatc acgtcctcgt
      121 caacttcgcc gaccacgcgg gccttgccgc tcttggcgct ggcgcgggcc agcaggcctt
      181 cgagctgatt gcgcaggtcg taatccagag cgacctgctg gctgccgacc gggaaatgct
      241 gctgcatgtg ggaaagcagg cgcatcaggt cgttgctgga aatcggcacg gcgtcggcgg
      301 gcatttcccg acgcggtaat acggcggagc cacgaacctg ggacagcagt tcctgcagcg
      361 cgccgaagac ctcctgaacg tcctcgtcag cgtagccggc ggattgcccg ccacgcgcct
      421 cgacggaatc gtcgcggctg gcgcgactgg ttccctgaga acgcccctgc tgacggcgtg
      481 caggcggcgc cgacttcagt tccggcagca cgccggcctc gaccagttgc tggttggcgt
      541 tggcgtacag ttgatccaga tcgcccagca cgtacttttc gaacagtttg aggatgatca
      601 gcttgacgcg gatctccacg cccagcccct cgcaggacgc gaggaactgt tcgcagagca
      661 tgcgcgggcc gagcgggttg gtcttgtcct cgagcttctt gctgatcatc gcgttgaggc
      721 gcgtggtcag gtggccgagg gcgacgccgt cccggctcat cacgcgggag accatggcgt
      781 ccagcgcgac ggactcttcc agcacatcgt cctgaaccag cgacaggctc tcgaacgaaa
      841 cggcgcccag ctgcggggcg gggctgccga tctcgtactg gttgagcgtg gaaaagctct
      901 cgaacacctt ctgcagaaaa ctgcgctcga tggtcttgcg cttcaggcgc aggtcgcgca
      961 tcgcctcgaa gaaggcgttc tgctcggtat tgctagccgc acgatcggcc atttcaaaga
     1021 gggtatcgtc cgcattgtcg aacaggcctt gcagcgcctg cttgagctgc tgggcagcct
     1081 tgtcgcgcac ctggatgagg gccacgggaa gccttcctgc cggcgaagtt ggcgattgct
     1141 cgggggcgac cttgttcagg tgcaccactt tcgcgtcggt cttcatgtcg agtctcccgc
     1201 aatccgtttg atcagaacag actgcatacg atcgctgggc atccgaagcg ccaataacat
     1261 ggcgtcaaac ttgtcaatga gccccagtat agggggatgc gaagcatgac caaataccct
     1321 ctgtcgcata catgacctgc atcacagagc gcagcgcccg aaggtacgaa cggtcgacca
     1381 gagggtctgg cagaccatgt gacaacgagc gcgacgacaa tgcacagaac ttttcctgtc
     1441 cttataatcg cgccactgaa aatgcggagg ccgaatggct aacctgatcc ttgccgacct
     1501 cggcgccgaa attgaagcca acgtgcgcgc cgccctgcgt gaagacatcg gcagcggcga
     1561 catcacggca caattgatcc ccgccgagcg actggctcac gccacggtga tcacccgcga
     1621 agccgcggtg atctgcggca ccgcctgggt cgaagcggtg tttcgccagc tcgatccaag
     1681 ggtaatcgtg cattggcagg tggcggatgg cgacagggtc gagcccgacc aggcgctgtt
     1741 tcatctcgaa ggcccggcac gcgccctgct cagcggcgaa cgcagcgccc tgaacttcct
     1801 gcagaccctc tcggccgtcg ccactcgctg ccgccacttc gccgacctga tcgaaggcac
     1861 ccaggtaagg ctgctcgaca cccgcaagac cctgcccggc ctgcgcctgg cacagaaata
     1921 cgcggtgacc cagggcggct gccacaacca ccgcatcggc ctgtacgacg ccttccttat
     1981 caaggagaac cacatcgcgg cctgcggcgg catcgcccaa gccatctcga cagcccacgg
     2041 catcgccccc ggcaagccgg tagagatcga agtggaaagt ctggaagaac tgcgcgaggc
     2101 gctggatgcg ggggccgaca tcgtcatgct cgacgagctg agcctggacg acatgcgcac
     2161 cgccgtctcc ctcaccgccg gccgcgccaa actggaagcc tcgggcggca tcaacgaaac
     2221 caccttgcgc accatcgccg aaaccggcgt cgactacatt tccattggca gcctgaccaa
     2281 ggacgtcaag gctatcgatc tgtcgatgcg gcttagcctt taaatagccg acgccagaga
     2341 cataaaagcc ccgcatctag cggggctttc tttacatagt gccggagaca ggagccgaac
     2401 ctgcgaccct cgcattacga gtgcgctgct ctaccaacta agccataccg gcatttggcc
     2461 gccactctgc cgaaaagcac ccacaaagcg atactcaggc tcgcacctca ggtttgtgcg
     2521 ccgattcttc gagaatcttg aaaaacaccg tctccaaaga caccgccggc ttcaccgtca
     2581 ggatacggcc acccgccata ttcagccgag cgatgagctc cggcagttga gcctgagtga
     2641 cctgcagctc gaactccccc tcacgcaacc gcttggcctg cggagcaaag ccttcgacga
     2701 cattgaaacg caccagcagg gtatcagcgc gctcggccgc cagctcgcga ggtgagcgca
     2761 ctgtcagcaa ctcacccttg ttgataaaac caaaacgatc ggcgatgcgt tcgacatcgt
     2821 gcagcacatg ggaggtaaag aagatggcgc caccctgttg cttatattcg ttgagaatct
     2881 caaccacatc cttgcgcccg acaggatcaa gaccggagag aggctcatcg agaatcagca
     2941 gccttggttg tactgccata gcg
//
LOCUS       DATIHC010000794         2028 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37184, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000794 DATIHC010000000
VERSION     DATIHC010000794.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2028
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37184"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..345)
                     /locus_tag="VLF16_13230"
     CDS             complement(<1..345)
                     /locus_tag="VLF16_13230"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HSX71884.1"
                     /translation="MELATSKLSMTVLMTPDMANFSGNVHGGTLLKYLDEVAYACAAR
                     YAGCYVVTLSVDQVIFRQPVHVGELVTFLAAVNYTGRTSMEIGIKVVTENIRERSVRH
                     TNSCFFTMVAVDE"
     gene            527..1231
                     /locus_tag="VLF16_13235"
     CDS             527..1231
                     /locus_tag="VLF16_13235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003464773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSX71885.1"
                     /translation="MRFHLFPLLLLPFGAVCTAAQQSCDSPAACNQAGTAAYQAGRFA
                     EAIDAFGLQLHHAELAEDRVAQELALNNLMLANLKAGRAGMARAWLQLALRDGFDGAA
                     TRHNLAKVGERDLSALAGPVEGEYRRYAGQGVWSTLEIRREGDGYRAVFGPIRAGRDV
                     REWGPAAIGELEGRLRGGGDYFELQDAGLEAECEVQLLRDGLRLQVQEVFAEPCQQYG
                     GAGISVGGEYFKVDAP"
     gene            complement(1228..>2028)
                     /locus_tag="VLF16_13240"
     CDS             complement(1228..>2028)
                     /locus_tag="VLF16_13240"
                     /inference="COORDINATES: protein motif:HMM:NF024039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator
                     ligand-binding domain-containing protein"
                     /protein_id="HSX71886.1"
                     /translation="AAELDPAIGLHLFAAFQPAEWHVLLHLAHASATVGTALQHWQRY
                     ARLASDMEQVRLQRDGERWIIDLCIDAPPELERCLVEHYSVMAIGVLRQGAGDALPPL
                     HAEFRHTRPAYHAEYARWFGQTRFGAAHNRLLLEDRHLALPMRQHHPVLEELLCEGLE
                     RRLAQLQQLSGWAAKVAERVRSDLRHARTPSLEVAAQALHQSPRTLRRRLQEEGLGFR
                     EVLDAVRAELEQSLQLQGLNRSQIAEQLGYADLAAYLHARKRWQTDAP"
BASE COUNT          286 a          651 c          751 g          340 t
ORIGIN      
        1 ctcgtccacg gcgaccatgg tgaagaagca gctgttggtg tggcgcaccg agcgctcgcg
       61 gatgttctcg gtgaccacct tgatgccgat ctccatcgac gtgcgcccgg tgtagttcac
      121 cgcggcgagg aaggtgacca gttcgccgac gtggaccggc tggcggaaga tcacctggtc
      181 caccgacagg gtcaccacgt agcagccggc gtagcgggcg gcgcaggcat aggcgacctc
      241 gtcgaggtac ttgagcaggg tgccgccgtg tacgttgccg gagaagttgg ccatgtccgg
      301 ggtcatcagc acggtcatgg agagtttgct ggttgcgagt tccatcgtct gtctcatagg
      361 cagtttctag ggcgctggcg atgcagtcct gcggggtctg cttgttgtta taggtgctgc
      421 ctgtgtactt cgcgttgcca gcgccggggc catgcaactt tgcggccgtc gccggcagtg
      481 tcgcggcgaa gccgttaagc tgggctcttt ggccaaggag tgagtcatgc ggttccatct
      541 gtttcccttg ttgctgctgc ctttcggggc ggtgtgcacc gccgcgcagc agagctgcga
      601 cagcccggcc gcctgcaacc aggccggcac cgccgcgtat caggcggggc gctttgccga
      661 ggccatcgac gccttcggac tccagttgca ccacgccgag ttggcggagg atcgcgtagc
      721 ccaggagctg gcgctgaaca acctgatgct ggccaacctc aaggccggtc gtgccgggat
      781 ggcgcgcgcc tggctgcagc tggcgctgcg cgatggtttc gacggtgccg ccacccgcca
      841 caatctggcc aaggtcggcg agcgcgacct gtccgccctg gccggcccgg tagagggcga
      901 atatcggcgt tacgccggcc agggggtctg gagcacgctg gaaatccgcc gcgagggtga
      961 cggctaccgt gctgtgttcg ggccgatccg cgccggccgc gatgtccggg aatggggccc
     1021 ggccgccatc ggcgagctgg aaggccggct gcgtggcggc ggtgactatt tcgagctgca
     1081 ggacgccggc ctggaggccg agtgcgaggt gcagctgctg cgcgacggcc tgcgcctgca
     1141 ggtgcaggaa gtgttcgccg agccttgcca gcagtacggc ggcgccggca tcagcgtggg
     1201 cggcgagtac ttcaaggtcg acgcgcccta gggcgcatct gtctgccagc gcttgcgtgc
     1261 gtgcaggtag gcggcgaggt cggcgtagcc gagctgctcg gcgatctggc tgcggtttag
     1321 gccttgcagc tgcaggctct gctccagctc ggcacgaacc gcgtcgagta cctcgcgaaa
     1381 gcccagcccc tcctcctgca ggcgccgacg cagggtacgc gggctctggt gcagggcctg
     1441 ggcggcgacc tcgaggctgg gcgtgcgcgc atggcgcagg tcgctgcgca cccgttcggc
     1501 aaccttggcg gcccagccgc tgagctgctg cagctgggcc aggcgccgct ccaggccttc
     1561 gcagagcagc tcctcgagca ccggatggtg ttgccgcatc ggcagcgcca ggtgccggtc
     1621 ctcgagcaac aggcggttgt gcgcggcgcc gaagcgcgtc tggccgaacc agcgggcgta
     1681 ctcggcatgg taggccgggc gggtgtggcg gaattcggcg tgcagcggcg gcagcgcgtc
     1741 gccggcgccc tggcgcagca cgccgatggc catcaccgaa tagtgttcga ccaggcagcg
     1801 ctccagctcc ggcggggcgt cgatgcacag gtcgatgatc cagcgctcgc cgtcgcgctg
     1861 cagccgcacc tgctccatgt ccgaggccag ccgcgcatag cgctgccagt gttgcagcgc
     1921 cgtgccaacg gtggcgctgg catgggccag gtgcagcagc acgtgccact cggccggctg
     1981 gaaggcggcg aacaaatgca ggccgatggc cgggtccagc tcggccgc
//
LOCUS       DATIHC010000795         3001 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_30251, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000795 DATIHC010000000
VERSION     DATIHC010000795.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3001
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30251"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1480
                     /locus_tag="VLF16_13245"
     CDS             <1..1480
                     /locus_tag="VLF16_13245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003281928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HSX71887.1"
                     /translation="AYAEQLLQQFTRLARLAGAERMPAALAEAAAQLTGCRLAQLYLL
                     DSTHTRLTLAAEWLDGQHAEHEASLPSDYDGEQLLQYCLCQNRRLSLASLDPSLHETS
                     FLPAADKPWRSLLCLPLQDEQARVAGLLLVASSGTRDLDVFAASLASLGAFALAQHQL
                     LQRLRAPRTSPPEPVSPALPSDYGLIGSSPAMRGVYQLIGKVLHNPTSVLLTGETGTG
                     KELVARAIHDCGFRRSKAFIVQNCASLPENLLESELFGYRKGAFTGAERDRKGLFDAA
                     DGGTLFLDEIGDMPLALQAKLLRVLQEGEVRPLGSTQTHKVDVRIVAATHRDLRSLVE
                     EGRFREDLFYRLSHFPIELPPLRARAEDILQLARHFAAKAADFLQRDACRWSEAALDH
                     LAGYAFPGNVRELKGLVERAVLLCEGGELLPEHFNLHPASIADDSCMNLRERMEKVER
                     NLLLDCLRKNRGNQSQAARELGLPRRTLLYRMDRLNISPADV"
     gene            1521..1658
                     /locus_tag="VLF16_13250"
     CDS             1521..1658
                     /locus_tag="VLF16_13250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011920432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion protein"
                     /protein_id="HSX71888.1"
                     /translation="MSHRLLTATLLAALLGLAGCGGNYKSSDDEYRPLGDQHAEQQRE
                     D"
     gene            1677..2900
                     /gene="tagH"
                     /locus_tag="VLF16_13255"
     CDS             1677..2900
                     /gene="tagH"
                     /locus_tag="VLF16_13255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008078713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system-associated FHA domain
                     protein TagH"
                     /protein_id="HSX71889.1"
                     /translation="MELVFDIVSAQQYAPGLLTSKSFKKAGGVIGRGEDCDWAIPDSK
                     RILSNRHVQVSYADGHFYLTDTSSNGVTLKDNGARLPKGEPQRIEHGNVYCLGELEIR
                     ARVLQDPAQFEDSIGQTQNAGSIIPDDAFLDLDPIAALEQRPRGYSQADEFAGLIQTP
                     EEEQARTQYARIDMESLLVPELVAEAAPEPVITPRPQPRPQPLAPAEPVAEGFWQCFG
                     EALGVKLDDLDAEAREALAVQAARLLKQSVAGLQQSLRTRGELKNELRLALTTVQSAG
                     NNPLKQVGDAGEALTALLRGSKPGALPAEQAMGRAYRDLQAHQVALYAASRTAVQGLF
                     EQFAPEQLSLRFEQERKPLIATAGSRWRAYQRHFRALEKDDDWSQRLFARDFAKTYEE
                     QVRLIATLNTDYQPS"
BASE COUNT          510 a         1154 c          955 g          382 t
ORIGIN      
        1 ggcctatgcc gagcaactgc tgcagcagtt cacccgcctg gcccggctgg ccggcgccga
       61 acgcatgccc gcggccctgg ccgaggcggc ggcgcagctc accggctgcc gcctggccca
      121 gctgtacctg ctggacagca cccacacccg gctgaccctg gccgccgaat ggctggacgg
      181 ccagcacgcc gaacacgaag ccagcctgcc cagcgactac gacggcgagc agctgctgca
      241 gtactgcctg tgccagaacc gacgcctgag cctcgccagc ctcgacccca gcctgcacga
      301 gaccagcttc ctgccggccg ccgacaagcc ctggcgcagc ctgctgtgcc tgccgctgca
      361 ggacgagcag gcgcgcgtcg ccggcctgct gctggtggcc agcagcggca cccgcgacct
      421 cgacgtgttc gccgcctcgc tggccagcct gggcgccttc gccctggccc agcaccagct
      481 gctgcagcgc ctgcgcgcac cgcgcaccag cccgcctgag cctgtcagcc cggcgctgcc
      541 cagcgactac ggcctgatcg gcagcagccc ggccatgcgc ggcgtgtacc agctgatcgg
      601 caaggtgctg cacaacccca ccagcgtgct gctgaccggc gagaccggca ccggcaagga
      661 gctggtcgcc cgcgccatcc acgattgcgg cttccgccgc agcaaggcgt tcatcgtgca
      721 gaactgcgcc tcgctgccgg agaacctgct ggagagcgag ctgttcggct accgcaaggg
      781 cgctttcacc ggcgccgagc gcgaccgcaa gggcctgttc gacgcggccg acggcggcac
      841 cctgttcctc gacgagatcg gcgacatgcc gctggccctg caggccaagc tgctgcgcgt
      901 gctgcaggaa ggcgaagtac gcccgctggg cagcacgcag acgcacaagg tcgacgtgcg
      961 catcgtcgcc gccacccacc gcgacctgcg cagcctggtc gaggaggggc gcttccgcga
     1021 ggacctgttc tatcgcctgt cgcacttccc catcgagctg ccgccgctgc gcgcccgcgc
     1081 cgaggacatc ctgcagctgg cccgccactt cgccgccaag gccgccgact tcctgcagcg
     1141 cgatgcctgc cgctggtccg aggcggcgct ggaccacctg gccggctatg ccttccccgg
     1201 caatgtgcgc gaactgaaag ggttggtaga gcgcgccgtg ctgctgtgcg agggcggcga
     1261 gctgctgccc gagcacttca acctgcaccc ggcaagcatc gccgacgaca gctgcatgaa
     1321 cctgcgcgaa cgcatggaaa aggtcgagcg caacctgctg ctcgactgcc tgcgcaagaa
     1381 ccgtggcaac cagagccagg ccgcccgcga gctgggcctg ccgcgccgca ccctgctgta
     1441 ccgcatggac cggctgaaca tcagcccggc cgatgtttga ggccgccatg aatcacccat
     1501 ccgccagtgg agaatccgcg atgtcccacc gcctactgac cgccaccctg ctcgccgccc
     1561 tgctcggcct cgccggctgc ggcggcaact acaagtccag cgacgacgaa taccgtccgc
     1621 tgggcgacca gcacgccgaa cagcagcgcg aagactgagc gcaaggagcc cctaccatgg
     1681 aactggtatt cgatatcgtc agcgcccagc agtacgcccc cggcctgctg accagcaaga
     1741 gcttcaagaa ggccggcggc gtgatcggcc gcggcgagga ctgcgactgg gccatccccg
     1801 acagcaagcg catcctctcc aaccgccatg tccaggtcag ctacgccgac ggtcacttct
     1861 acctgaccga taccagcagc aacggcgtga ccctcaagga caacggcgcg cgcctgccca
     1921 agggcgagcc gcagcgcatc gagcacggca acgtctactg cctgggcgag ctggagatcc
     1981 gcgcccgcgt gctgcaggac ccggcacagt tcgaggacag catcggtcag acccagaacg
     2041 ccggcagcat tatccccgac gacgccttcc tcgacctcga tccgatcgcc gccctcgagc
     2101 agcgcccgcg cggctacagc caggcggacg agttcgccgg cctgatccag acgcccgagg
     2161 aagagcaggc gcgcacccag tacgcgcgca tcgacatgga gagcctgctg gtgcccgaac
     2221 tggtggccga ggccgcaccc gagccggtga tcacaccgcg gccgcagccc cgcccacagc
     2281 cgttggcgcc ggccgaaccg gtggccgaag gcttctggca gtgcttcggc gaggccctcg
     2341 gagtgaagct cgacgacctc gacgccgagg cccgcgaggc cctggccgtg caggccgcgc
     2401 gcctgctcaa gcagagcgtc gccggcctgc agcagagcct gcgcacccgc ggcgagctga
     2461 agaacgaact gcgcctggcc ctgaccaccg tgcagagcgc cggcaacaac ccgctcaagc
     2521 aggtcggcga tgccggcgag gcgctcaccg ccctgctgcg cggcagcaag cccggcgcgc
     2581 tgccggccga gcaggccatg ggtcgtgcct accgcgacct gcaggcgcac caggtggcgc
     2641 tgtacgccgc cagccgcacc gcggtgcagg gcctgttcga gcagttcgcg ccggaacagc
     2701 tgagcctgcg cttcgagcag gagcgcaagc cgctgatcgc caccgccggc agccgctggc
     2761 gcgcctacca gcgccacttc cgcgcgctgg agaaggacga cgactggagc cagcgcctgt
     2821 tcgcccgcga cttcgccaag acctacgaag aacaggtgcg cctgatcgcc accctcaaca
     2881 ccgactacca gccttcctga gaagcaaagg atgaatgcca tgcgccgtct tatcagcctt
     2941 agcctactgg ccctgctcgc cgccctcggc ggctgctcca gcctgtcgcc ctattccgac
     3001 a
//
LOCUS       DATIHC010000796         3940 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_6993, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000796 DATIHC010000000
VERSION     DATIHC010000796.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3940
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6993"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..827)
                     /locus_tag="VLF16_13260"
     CDS             complement(<1..827)
                     /locus_tag="VLF16_13260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017530818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSX71890.1"
                     /translation="MSTIRSIFRHSALAMGLLGASQAMAADLTVISFGGANKDAQTKA
                     FYQPWEAAGKGKIIAGEYNGEMAKVKAMVDTNSVSWHLVEVESPELTRGCDEGLFEEL
                     DPAQFNEEDFVEGAIQPCGIGFFVWSTVLAYNADKLKSAPASWADFWDVAKFPGKRGL
                     RKGAKYTLEFALMADGVAPKDVYTVLATQEGQDRAFKKLDEIKPHIQWWEAGAQPPQF
                     LASGDVVMSSAYNGRIAAVQKESNLQVVWNGGIYDFDSWAIPKGAKDADAAKAFAAFT
                     "
     gene            complement(871..1935)
                     /locus_tag="VLF16_13265"
     CDS             complement(871..1935)
                     /locus_tag="VLF16_13265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSX71891.1"
                     /translation="MAENASSDVLVSFKGVQKSYDGESLIVKDLNLDIRKGEFLTLLG
                     PSGSGKTTSLMMLAGFETPTAGEILLAGRAINNVPPHKRDIGMVFQNYALFPHMTVAE
                     NLAFPLTVRGMNKTDITERVKRALSMVQLDNFRHRYPAQLSGGQQQRVAMARALVFEP
                     QLVLMDEPLGALDKQLREHMQMEIKHIHQRLGVTVVYVTHDQGEIQQIAPPRDLYEAP
                     SNTFVAQFIGENNRLAGELVGRDGERCTVRTARGEQVQALAVKVGAPGEPVSLSIRPE
                     RVRINAASESCANRFSGRVAEFIYLGDHVRIRMEVCGNPNFFVKQPIAELDPALGVGD
                     VVPLGWHVEHVRALDPLIVE"
     gene            complement(2372..3001)
                     /locus_tag="VLF16_13270"
     CDS             complement(2372..3001)
                     /locus_tag="VLF16_13270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002551898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSX71892.1"
                     /translation="MIRVLVAEDHTIVREGIKQLIGLAKDLTVAGEACNGEQLLETLR
                     HTPCEVVLLDISMPGVNGLEAIPRIRALSEPPAVLVLSMHDEAQMAARALKIGAAGYA
                     TKDSDPALLLTAIRKVAAGGRYIDPELADRMVFEVGLTDSRPPHALLSEREFSVFERL
                     VRGEGVNEIAQHLSVSSKTISTHKARLMQKLNLHSVADLVKYAVEHKLL"
     gene            complement(2998..>3940)
                     /locus_tag="VLF16_13275"
     CDS             complement(2998..>3940)
                     /locus_tag="VLF16_13275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007959927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSX71893.1"
                     /translation="LVGSPPATIMAVDFGIRSLVHPEDRAAYHATQDAAIEAASDWQW
                     QGRILTRDGRVRWADIKASARQLSAEHVVWDGVVWDISDNKTIELELAESRAQLRELS
                     AHLESVREEEKARIAREVHDELGQVLTVLKLETSMCELAYAGLDAGLQARLDSMKKLI
                     ANLFQLVRDVATALRPPILDAGIASAIEWQARRFEARSGIPCLVRVPEQVPALADAKA
                     IGLFRVLQEALTNVLRHAQAHTVEIDLEVQGGELCLRVSDDGRGFDTAAQRAQSFGLV
                     GMRERVLMLGGRLDIDSAPGEGTTLSVRVALDEEVVA"
BASE COUNT          596 a         1313 c         1334 g          697 t
ORIGIN      
        1 gtgaaggcgg cgaaggcctt ggcggcatcg gcatccttag cccccttcgg gatggcccag
       61 gagtcgaagt cgtagatgcc gccgttccac accacctgca ggttgctctc cttctgcacc
      121 gcggcgatgc ggccgttgta ggcggagctc ataaccacgt cgccggaggc gaggaactgc
      181 ggcggctggg cgccggcctc ccaccactgg atgtgcggct tgatctcgtc gagcttcttg
      241 aacgcgcgat cctggccttc ctgggtggcg agcacggtgt agacgtcttt cggcgccacg
      301 ccgtcggcca tcagggcgaa ttccagggtg tacttggcgc ccttgcgcag gccgcgcttg
      361 cccgggaatt tggccacgtc ccagaaatcg gcccagctgg ccggcgcgct cttgagcttg
      421 tcggcgttgt aggcgagcac ggtggaccag acgaagaagc cgatgccgca cggctggatg
      481 gcgccctcga cgaagtcttc ttcgttgaac tgcgccgggt cgagctcctc gaacaggccc
      541 tcgtcgcaac cgcgggtcag ctcgggcgac tccacttcca ccaggtgcca ggacacgctg
      601 ttggtgtcga ccatggcttt gaccttggcc atctcgccgt tgtactcgcc ggcgatgatc
      661 ttgcctttgc cggccgcttc ccaaggctgg tagaaggcct tggtctgggc gtccttgttg
      721 gcaccgccga aggagatgac cgtgaggtcg gcggccatcg cctggctcgc gccgagcagg
      781 cccatagcca atgcgctatg gcggaagatg ctgcggatag tgctcattgt tgttttctcc
      841 actgtgcagg gttggtaatg cctggcgccg tcactcgacg atcagagggt ctagcgccct
      901 tacgtgctcc acatgccagc cgagcggcac cacgtcgccc acgcccaggg cggggtcgag
      961 ttcggcgatc ggctgtttga cgaagaagtt ggggttgccg cagacctcca tgcggatgcg
     1021 cacgtggtcg cccaggtaga tgaactcggc cacccggcca ctgaagcggt tggcgcagct
     1081 ctcgctggcg gcgttgatgc gcacccgctc ggggcggatc gacaggctga ccggctcgcc
     1141 cggcgcgccg accttgaccg ccagcgcctg cacctgctcg ccacgcgcgg tgcgcacggt
     1201 gcagcgctcg ccgtcacggc cgaccagctc gccggccagg cgattgttct cgccgataaa
     1261 ctgggcgacg aaggtgttgc tcggcgcctc gtagaggtcg cgcggcgggg cgatctgctg
     1321 gatctcgccc tggtcgtggg tcacgtagac cacggtcacg cccaggcgct ggtgaatgtg
     1381 cttgatctcc atctgcatgt gctcgcgcag ctgcttgtcc agcgcgccga gcggctcgtc
     1441 catcagcacc agctgcggct cgaacaccag cgcacgggcc atggccacac gctgctgctg
     1501 gccgccggag agctgcgccg ggtagcggtg gcggaagttg tcgagctgga ccatggacag
     1561 cgcgcgtttc acgcgctcgg tgatgtcggt cttgttcatg ccgcgcacgg tgagcgggaa
     1621 ggccaggttc tcggccaccg tcatgtgggg gaacagcgcg tagttctgga acaccatgcc
     1681 gatgtcgcgc ttgtgcggcg gcacgttgtt gatggcgcgc ccggccagga ggatctcacc
     1741 ggcggtgggc gtctcgaagc cagccagcat catcaggctg gtggtcttgc cggagccgga
     1801 cgggccgagc agggtgagga actcgccctt gcggatgtcc aggttgaggt ctttgacgat
     1861 caggctctcg ccgtcgtagc tcttctgcac gcccttgaag ctgacgagca cgtcactgga
     1921 agcattctcg gccatcaccg caccttttgt tcttgttgcc gtgccgtaag actagaaagc
     1981 cgtgcagccg gcgcaaatcg ggcgggatga cagattgcta taaggcgtgc ggaggactgg
     2041 ctgtagggct tgccctacaa gcagcaggag cggcggcccg gatgccgtcc gggacaggcg
     2101 gttgcgctgg ccccggcaga gtggatggcc gttgccaccc accgtggcgg acaagcctgc
     2161 ggcgttgtcc accctactgg ctacaacagc tgtgctcgac cgcgtacgtc accagtgagt
     2221 agcccggatg caatccggga acaggccgtc tcgctctcca aactgcataa gggctacgac
     2281 gcctcgtctc agagcagtga gtagcccgga tgccatccgg ggaaacaggc ggctccgctc
     2341 ccggattgca tccgggctac ggggaacagc atcagagcag cttgtgttcc accgcgtact
     2401 tcaccaggtc ggccaccgag tgcaggttga gcttctgcat caggcgcgcc ttgtgggtgc
     2461 tgatggtctt gctgctcacc gacaggtgct gggcgatctc gttgacgccc tcgccgcgca
     2521 ccaggcgctc gaataccgag aactcacgct cggacagcag cgcgtggggc ggccgcgagt
     2581 cggtcaggcc gacttcgaag accatgcggt cggccagctc cggatcgatg tagcgaccac
     2641 cggcagcgac cttgcgaatg gcggtgagca gcagcgccgg gtcgctgtcc ttggtggcgt
     2701 agccggcggc gccgatcttc agggcgcggg cggccatctg cgcctcatcg tgcatggaca
     2761 gcaccagcac ggccggcggc tcgctcagcg cgcggatgcg cggaatcgct tccaggccgt
     2821 tgacgccggg catggagata tccagcagca ccacctcgca gggcgtgtgg cgcagggtct
     2881 ccagcaattg ctcgccgttg caggcctcgc ccgcgaccgt caggtccttg gccaggccga
     2941 tcagctgctt gatgccctcg cggacgatgg tgtggtcttc ggccaccagt actcgaatca
     3001 cgctacgacc tcttcatcta gtgccacacg cacgctcagg gtggtgccct cccccggcgc
     3061 gctgtcgatg tccaggcggc cgccgagcat cagcacgcgc tcgcgcatgc cgaccaggcc
     3121 gaaggattgt gcgcgctggg cggccgtgtc gaaaccccga ccatcgtcac tcacccgcag
     3181 gcacagctcg ccgccctgca cttccaggtc tatctccacc gtatgcgcct gggcatgccg
     3241 cagcacgttg gtcagcgcct cctgcagcac gcggaacagg ccgatggcct tggcgtccgc
     3301 cagcgccggc acctgctccg gcacccgcac caggcaggga atgccgctgc gcgcctcgaa
     3361 gcgccgcgcc tgccattcga tggccgaggc gatgccggca tcgaggatcg gcggacgcag
     3421 cgcggtggcc acgtcgcgca ccagctggaa caggttggcg atcagcttct tcatgctgtc
     3481 caggcgcgcc tgcaggccgg cgtcgaggcc ggcgtaggcc agctcgcaca tggaggtctc
     3541 cagcttgagc acggtgagca cctggcccag ctcgtcgtgc acctcgcggg cgatgcgcgc
     3601 cttctcctcc tcgcgcacgc tctccaggtg cgccgacagc tcgcgcagct gggcccgtga
     3661 ctcggccagc tccagctcga tggtcttgtt gtcgctgatg tcccacacca cgccgtccca
     3721 caccacatgc tcggcactga gctgccgggc gctggccttg atatcggccc agcgcacgcg
     3781 gccgtcgcgg gtgaggatgc ggccctgcca ctgccagtcg ctggcggcct cgatggcggc
     3841 gtcctgggtg gcgtggtagg cggcgcggtc ctcggggtgg accaggctgc ggatgccgaa
     3901 gtccaccgcc atgatggtcg ccggcgggga gccgaccagc
//
LOCUS       DATIHC010000797         2984 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13770, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000797 DATIHC010000000
VERSION     DATIHC010000797.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2984
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13770"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..588)
                     /locus_tag="VLF16_13280"
     CDS             complement(<1..588)
                     /locus_tag="VLF16_13280"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003905 - alkylbase DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HSX71894.1"
                     /translation="MTVLPWPAAAALPDRFFDRDAQLLARALLGKVIRHCHRGHWLAA
                     RIIETEAYYREEKGSHASLGYTEKRRALFLDGGHIYMYYARGGDSLNFSAQGPGNAVL
                     IKSAVPWLDEHCAGDALPRMQANNPSAAGDHRHPERLCAGQTLLCKALGLKVAQWDAQ
                     RFDPQRLFVEDVGQRPESIIQATRLGIPAGRDEHLP"
     gene            762..2027
                     /locus_tag="VLF16_13285"
     CDS             762..2027
                     /locus_tag="VLF16_13285"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004350 - glutamate-5-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HSX71895.1"
                     /translation="MTESVLDYMTRLGRAARDASRVLARASTAQKNHALQAAANALDA
                     ARAELTAANELDLSAARANGLEPAMVDRLALTPKVIDGMIEGLRQVATLPDPIGEIRD
                     MRFLPSGIQVGKMRVPLGVIGIIYESRPNVTIDAASLCLKSGNATILRGGSEAIHSNQ
                     AIARCIQVGLAEAGLPASAVQVVETTDRAAVGALITLPEFVDVIVPRGGKGLIERISR
                     DARVPVIKHLDGVCHVYVDIAADIDKAIRVCDNAKTQRYSPCNTMETLLVHAGIAERV
                     LPPLAATYRDKGVELRGDAATRALLGNDVLEASEDDWYAEYNAPILAIRIVDSLDAAI
                     EHINQYGSQHTDAIITEHFSDARRFLTEVDSASVMVNASTRFADGFEYGLGAEIGIST
                     DKLHARGPVGLDGLTSEKYVVFGDGHIRT"
     gene            2041..2706
                     /gene="nadD"
                     /locus_tag="VLF16_13290"
     CDS             2041..2706
                     /gene="nadD"
                     /locus_tag="VLF16_13290"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HSX71896.1"
                     /translation="MALRGDARRIGILGGTFNPVHIAHLRGALEVAEFMGLDELRLIP
                     SARPPHRQAPQVTAEQRLAMVELAAAGEPLLAVDDRELKRDKPSFTYDTLESVRGELA
                     ADDQLFLLLGWDAFCGLPTWHRWQELLTHCHLLVLQRPDADSEAPEELRDLVAARSVH
                     DPLGLAGPGGQISFIWQTPLAVSATQIRQLLADGRSVRFLVPDAVLAYIHAHGLYRAH
                     TVS"
     gene            2714..>2984
                     /gene="rsfS"
                     /locus_tag="VLF16_13295"
     CDS             2714..>2984
                     /gene="rsfS"
                     /locus_tag="VLF16_13295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014818953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HSX71897.1"
                     /translation="MQNEELARVAIEALEELKGKDITTIDVRGKTSVTDFMVIASGTS
                     SRHVKSLAENVLEKVKEQGVRPIGNEGLDGGEWALLDLGDVVVHVM"
BASE COUNT          479 a         1034 c         1013 g          458 t
ORIGIN      
        1 gggcagatgc tcgtcgcggc ccgccggaat gcccaggcgg gtggcctgga tgatgctctc
       61 ggggcgctgg ccgacatctt cgacgaacag ccgctgcggg tcgaagcgct gcgcgtccca
      121 ctgcgccacc ttcaggccga gcgccttgca cagcagggtc tggccggcgc acagacgctc
      181 cgggtggcga tggtcgccgg cggccgaggg gttgttggcc tgcatgcgcg gcagggcgtc
      241 gcctgcgcag tgttcgtcca gccagggcac ggccgacttg atcagcacgg cattgcccgg
      301 cccctgggcg ctgaagttca gcgagtcgcc gccgcgggcg tagtacatgt agatgtggcc
      361 gccgtcgaga aacagcgcgc ggcgcttctc ggtataaccg agcgaggcgt ggctgccctt
      421 ttcttcgcgg tagtaggcct cggtctcgat gatgcgcgcc gccagccagt ggccgcgatg
      481 gcaatgccgg atgaccttgc ccagcagcgc tcgggccagc aactgggcgt cgcggtcgaa
      541 gaagcggtcg ggcagcgcgg cggctgcggg ccagggcaga acggtcatgc ggcggtcggt
      601 agtcgtgaaa ggcgcgatct tagcaacgcc cgcggccctc ggcggcgaat cttgttccgc
      661 gatgttgcgc gccggcgcca tccgcccggc agtgctgggc gtggcggggc ctgcccgcta
      721 taatcagccc cttttttcca accgccagac gtatgccgac catgaccgag tccgtgctcg
      781 actacatgac ccgcctgggc cgcgccgcgc gcgacgcctc gcgggtgctc gcccgggcca
      841 gcaccgcgca gaagaaccat gcgctgcagg ccgccgccaa cgccctcgac gccgcccgcg
      901 ccgagctgac cgccgccaac gaactggacc tgagcgccgc tcgcgccaat ggtctggagc
      961 cggcgatggt cgaccgcctg gcactgacgc cgaaggtcat cgacggcatg atcgaaggcc
     1021 tgcgccaggt cgccaccctg ccggacccga tcggcgagat ccgcgacatg cgcttcctgc
     1081 cgtccggcat ccaggtcggc aagatgcgcg tgccgctggg cgtgatcggc atcatctacg
     1141 agtcgcgccc caacgtgacc atcgacgccg ccagcctgtg cctgaagtcc ggcaacgcca
     1201 ccatcctgcg tggcggctcc gaggccatcc actccaacca ggccatcgcc cgctgcatcc
     1261 aggtcggcct ggccgaagcc ggcctgccgg ccagtgccgt gcaggtggtg gaaaccaccg
     1321 accgcgctgc cgtcggcgcg ctgatcaccc tgcccgaatt cgtcgacgtg atcgtgccgc
     1381 gcggcggcaa gggcctgatc gagcgcatca gtcgtgacgc ccgggtgccg gtgatcaagc
     1441 atctggacgg tgtctgccac gtgtacgtgg acatcgccgc cgacatcgac aaggccatcc
     1501 gcgtctgcga caacgccaag acccagcgct actcgccctg caacaccatg gagacgctgc
     1561 tggtgcatgc cggcatcgcc gagcgcgtgc tgccgccgct ggccgccacc taccgcgaca
     1621 agggcgtgga gctgcgcggc gacgccgcga cccgcgcgct gctcggcaat gacgtactgg
     1681 aagcgagcga ggacgactgg tacgccgagt acaacgcgcc gattctggcg atccgcatcg
     1741 tcgactcgct ggatgcggcc atcgagcaca tcaaccagta cggctcgcag cacaccgatg
     1801 cgatcatcac cgagcacttc agcgatgccc gtcgcttcct caccgaggtg gactccgcct
     1861 cggtgatggt caatgcctcc acccgtttcg ccgacggctt cgagtacggc ctgggcgcgg
     1921 agatcggcat ctccaccgac aagctgcatg cccgcgggcc ggtcggcctg gacggcctta
     1981 ccagcgagaa gtacgtggta ttcggcgacg gacacattcg tacctgatgg ggcgcacctg
     2041 atggcgctac gtggcgacgc ccgacgcatc ggcatactcg gcggcacctt caacccggtg
     2101 cacatcgcgc acctgcgggg cgcgctggaa gtggccgagt tcatggggct ggacgagcta
     2161 cggctgatcc ccagcgcccg gccgccgcat cgccaggcgc cgcaggtcac ggccgagcag
     2221 cgcctggcca tggtcgaact ggccgccgcg ggggagccgc tattggcggt cgacgaccgc
     2281 gagctgaaac gcgacaagcc gtcgttcact tacgacaccc tggagtcggt gcgcggtgag
     2341 ctggcggcgg acgaccagct gttcctcctg ctgggctggg atgccttctg cgggttgccg
     2401 acctggcatc gctggcagga gctgctgacg cactgccacc tcctcgtgct gcagcggccg
     2461 gatgccgaca gcgaggcgcc ggaggagctg cgcgacctgg tcgccgcgcg cagcgtgcac
     2521 gatccgctgg gcctcgccgg tccgggcggg cagatcagtt tcatctggca gacgccgctc
     2581 gcggtgtccg ccacccagat tcgccaactg ctggcggacg ggcgctcggt gcgtttcctg
     2641 gtgcccgacg ccgtgttggc ctatatccat gcgcacggcc tgtaccgtgc tcacaccgtt
     2701 tcatgaggta gcaatgcaaa acgaagaact ggcccgggtc gccatcgagg ccctggaaga
     2761 actcaaaggc aaggacatca ccaccatcga tgtgcgcggt aagaccagcg tcaccgattt
     2821 catggtcatc gccagcggca cctccagccg tcacgtcaaa tccctggccg agaacgtgct
     2881 ggagaaggtc aaggagcagg gtgtgcgccc gatcggcaac gaaggtctgg acggcggcga
     2941 atgggccctg ctcgacctgg gcgacgtggt ggtgcatgtg atgc
//
LOCUS       DATIHC010000798         3286 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17475, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000798 DATIHC010000000
VERSION     DATIHC010000798.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3286
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17475"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(104..1162)
                     /locus_tag="VLF16_13300"
     CDS             complement(104..1162)
                     /locus_tag="VLF16_13300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HSX71898.1"
                     /translation="MYSPRIEQKSFLTLLVLVTLAFGWILLPFWGALFWAVVLSVLFA
                     PLQRRMALRFGGRGNLSALVTLSVCLLVAILPVILISLALVNEGTAIYQRIEKGELDI
                     GTYVERFKTLLPDTLQRLLDRFGLGNFDALRERIARGAMQGSEFLATKAFDIGQNTFQ
                     FLVGFFVMLYLLYFFLRDGPELVRLVRTAVPLEDSLKRRLQIKFTRVVRATVKGNLVV
                     AAVQGALGGLIFWLLGIGSPLLWGVLMAFLSLLPAVGCGLVWGPVALYLLASGEVTQG
                     IVLIAFGVLVIGLVDNLLRPILVGKDTRMPDYLVLISTLGGLTLFGLNGFVIGPLIAA
                     LFVASWGLYSSRRQVRLP"
     gene            complement(1274..2956)
                     /locus_tag="VLF16_13305"
     CDS             complement(1274..2956)
                     /locus_tag="VLF16_13305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017362927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSX71899.1"
                     /translation="MRLTLKTKVMLLALVPVILFALVLSGAAAKILTNLAEDEVAQTR
                     ERLIQENRQELKNYMQIALGSVQALYDAASPGDMASREQAIEILAKIKYGQDSYFFGY
                     DSQVIRLFRGDSPTDVGKSFTGRKDPNGVAVNDELVRVAKDGSNYVEYSSPLPGNESV
                     LVPKLGYSYYLPKWDLALGTAVNLDGVEAQVAEVEAAIEERVATILTSILVIAAVMLV
                     VFGIGGLTLSNAFLRPLQQIKANLDDIAAGEGDLTRRLPVASEDELGQLAGSFNRFVE
                     KIHGLVRQIAEMTEQLTGLVGQVAAQAQRSEHAMERQRHETDQVATAINEMSAAAHEV
                     AKSAQGAAEAAQQTDREGQAAKQVVDGSITRIHALVGDIRSSGQSLDSLQQDVQSIVS
                     VLDVIRSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALASRTQQSTQEIQGMI
                     DRLQQGTQASVTAMRRSSDAGEDTSNQANQAGASLDAIAGLIGTINAMNAQIASAAEE
                     QTAVAEEINRSVHQIAVAVDSVADETRQGAETARSLSGLGERLGGLVRQFRI"
     gene            complement(3051..>3286)
                     /locus_tag="VLF16_13310"
     CDS             complement(3051..>3286)
                     /locus_tag="VLF16_13310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HSX71900.1"
                     /translation="VPLCVQLGFSPLAIVSLIGTAGALGDAGSPASDSTLGPTAGLNV
                     DGQHNHIWDTVVPTFLHYNLPLLAFGWAAAMLL"
BASE COUNT          545 a         1110 c         1088 g          543 t
ORIGIN      
        1 gagttggtgc aacaggccgc tctggtggcc gttgcgccct gacggcgacc tggcctaaaa
       61 aaaccggcct cggccggttt ttttatgcgc gcctttcgac gactcagggc agtcggacct
      121 ggcgccggct gctgtagaga ccccagctgg ccacgaacag cgcggcgatc agcgggccga
      181 taacgaagcc attgaggccg aacagcgtca acccgcccag cgtggagatc agcaccaggt
      241 agtccggcat gcgcgtgtcc ttgcccacca gtatcgggcg cagcaggttg tccactaggc
      301 cgatgaccag cacgccgaag gcgatcagca cgattccctg cgtcacctcg ccggacgcca
      361 gcaggtacag cgccacgggg ccccacacca gaccgcagcc caccgccggt agcagcgaca
      421 gaaaggccat cagcacaccc cacagcaacg ggctgccaat gcccagcagc cagaagatca
      481 gcccgccgag cgccccctgc accgccgcca ccaccaggtt gcccttcacc gtggcgcgca
      541 ccacgcgggt gaacttgatc tgcagccgac gcttgagcga atcctcgagc ggcacagccg
      601 tgcgcaccag gcgcaccagc tcggggccgt cgcgcaggaa gaaatacaac agatagagca
      661 tgacgaagaa gccgaccagg aactggaagg tgttctgccc gatgtcgaag gccttggtcg
      721 ccagaaactc gctgccctgc atggcgcccc gggcgatgcg ctcgcgcagc gcgtcgaagt
      781 tgcccaggcc gaagcggtcc agcagccgct gcaaggtgtc cggcagcaag gtcttgaagc
      841 gttcgacata ggtgcctatg tcgagctcgc ccttctcgat ccgctggtag atggcggtgc
      901 cctcgttgac cagggccagg ctgatcagga tcaccggcag gatcgccacc agcaggcata
      961 ccgacagcgt caccagcgcc gagagattgc cgcgcccgcc gaagcgcagc gccatgcgcc
     1021 gctgcagcgg cgcgaacagc accgacagca ccacagccca gaacagcgcg ccccagaacg
     1081 gcaggaggat ccagccgaag gccagggtga ccagcaccag gagcgtgagg aaggattttt
     1141 gttcgatgcg cggtgaatac atgggcggcg ggaccggtcg ggactgttgc tgtttagtcc
     1201 tcctgccgcc ccgttaagtg cgagctttct cgcccatggg aggcgccgta gcgcctcccg
     1261 tgtcgtctcg cgatcagatg cggaactgac gcaccaggcc gcccaggcgc tcgccaaggc
     1321 ccgacaggct gcgcgcggtt tcggcgccct ggcgagtttc atcggcgacg ctgtccaccg
     1381 ccacggcgat ctggtgcacg ctgcggttga tctcctcggc cacggcggtc tgctcctcgg
     1441 cggcactggc gatctgcgcg ttcatcgcgt tgatggtgcc gatcagcccg gcgatggcgt
     1501 ccagcgacgc gccggcctgg ttggcctgat tgctggtgtc ctcgccggcg tcgctggagc
     1561 ggcgcatggc ggtgaccgag gcctgggtgc cctgctgcag gcggtcgatc atgccctgga
     1621 tttcctgggt gctctgctgg gtacggctgg ccagcgcgcg cacctcgtcc gccaccaccg
     1681 caaaaccgcg accggcttcg ccggcacggg ccgcttcgat ggccgcgttg agcgccagca
     1741 ggttggtctg ctcggcgatg gagcggatca cgtcgagcac gctgacgatg gactgcacgt
     1801 cctgctgcag gctatccagc gactggccgc tagagcggat gtctccgacc agcgcatgga
     1861 tgcgggtgat gctgccatcc accacctgct tggcggcctg gccttcgcgg tcggtctgct
     1921 gggccgcctc ggcggcgccc tgggcgctct tggccacttc gtgggcggcg gcggacatct
     1981 cgttgatcgc cgtggccacc tgatcggtct cgtggcgctg gcgctccatg gcgtgttcgg
     2041 aacgctgcgc ctgggcggcg acctggccga ccaggccggt gagctgctcg gtcatctcgg
     2101 cgatctgccg caccaggccg tggattttct cgacgaagcg gttgaacgag ccggccagct
     2161 ggcccagctc gtcctcgctg gccaccggca ggcggcgggt cagatcaccc tcgccggccg
     2221 cgatgtcgtc gaggttggcc ttgatctgct gcagcggacg caggaaggcg ttgctcagcg
     2281 tcaggccgcc aatgccgaat accaccagca tcacggcggc gatcaccagg atgctggtga
     2341 ggatggtggc gacgcgctcc tcgatagccg cctcgacttc cgccacctgg gcctcgacgc
     2401 cgtccaggtt gaccgccgtg cccagcgcca ggtcccactt cggcaggtag tagctgtagc
     2461 ccagcttggg caccagcacg ctctcgttac ccggaagcgg cgagctgtat tccacgtagt
     2521 tggagccgtc cttggcgacg cgcaccagct cgtcgttgac cgcaacgccg ttggggtcct
     2581 tgcggccggt gaagctcttg cccacgtcgg tcgggctgtc gccgcggaac aggcgtatca
     2641 cctgcgagtc gtagccgaag aagtagctgt cctggccgta cttgatcttc gccaggatct
     2701 cgatggcctg ctcgcgactg gccatgtcgc ccgggctggc ggcgtcgtac agcgcctgca
     2761 ccgagcccag ggcgatctgc atgtagttct tcagttcctg acgattctcc tggatcagac
     2821 gctcgcgggt ctgcgccact tcgtcctccg ccaggttggt caggatcttc gcggcggcgc
     2881 cgctcagcac cagggcgaag aggatcaccg gcaccagggc cagcagcatg actttggttt
     2941 tcagcgtgag gcgcatatgg attccttctc tctatcggca gcgcacaaag caaaacgggg
     3001 tgccctgtta tcggcaaccc cgctgcaacc tgaagtgcgt ggtagacgct ttacagcagc
     3061 atggccgcgg cccagccaaa ggccagcagc ggcaggttgt agtgcaggaa cgtcggcacc
     3121 accgtgtccc agatgtgatt gtgctggccg tccacgttca ggccggcggt cgggccgagt
     3181 gtggagtcgg acgccggcga gccggcatcg cccagcgcgc cggcggtgcc gatcaggctg
     3241 acgatggcca gcggactgaa acccagctgc acgcacagtg gcacga
//
LOCUS       DATIHC010000799         3340 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4529, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000799 DATIHC010000000
VERSION     DATIHC010000799.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3340
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4529"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..528
                     /locus_tag="VLF16_13315"
     CDS             <1..528
                     /locus_tag="VLF16_13315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017519189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="short-chain dehydrogenase"
                     /protein_id="HSX71901.1"
                     /translation="VSYSAAKFGLRGFSEALRGELTDWPGIHVCDVYPAVIDTPGFRD
                     GGNYSGHALTPPPPRYDPREVAATMVRLALHPRASSTVGGMAHLLRLAHFLVPGFAQL
                     AGWGTARAIGRARHTPVSSGNLFHPPLGQRRIDGGWRQPASKQTSTLLALGALGAAAA
                     GWYLVRRLNGSSWRR"
     gene            complement(503..1429)
                     /gene="metR"
                     /locus_tag="VLF16_13320"
     CDS             complement(503..1429)
                     /gene="metR"
                     /locus_tag="VLF16_13320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014821082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MetR"
                     /protein_id="HSX71902.1"
                     /translation="MLELRHLKTLHALRETDSLVEAAERLHLTQSALSHQFKELEERL
                     GMQLFVRKTKPVRFTSAGLRLLQLADSLLPQLRAAERDLARLAGGTAGRLHMAIECHS
                     CFQWLMPTIDQFRDAWPEVELDLASGFSFAPLPALARGDLDLVVTSDPMELAGITYVP
                     LFTYEALLAVANQHALAGRSYVLPEDLERETLITYPIDRDRLDIFSRFLEPADVEPAQ
                     VRTSELTVMMMQLVASGRGVCSLPNWALHEYSSRGYVTAKRLGEKGLYATLYAGIRAD
                     MLDAPFMRDFLLTAKDTSFATLEGVSAATKNR"
     gene            1541..>3340
                     /gene="metE"
                     /locus_tag="VLF16_13325"
     CDS             1541..>3340
                     /gene="metE"
                     /locus_tag="VLF16_13325"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003871 -
                     5-methyltetrahydropteroyltriglutamate-homocysteine
                     S-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HSX71903.1"
                     /translation="MALAHNLGFPRIGGDRELKKAVEAYWKGELDEAGLRAVGRQLRA
                     AHWQIQKDAGIELLPVGDFAWYDQVLTHSLTFGVIPERFHVHGGKPGLDTLFGMARGV
                     SGNTSSHNTCCGGAHAQEMTKWFDTNYHYLVPEFSADQQFALSWEQLFEEVEEGKALG
                     HNLKPVLIGPLTYLWLGKEKGGDFNRLDLLERLLPVYGEILQRLAAQGIEWVQIDEPI
                     LALDLPQAWKNAFERAYNLLQKEPGKKLIATYFAGLEDNLGLAAGLPVDGLHIDLVRA
                     PEQFPAILDRLPAYKVLSLGVVNGRNVWRTDLQKALAVLQQAHERLGSRLWVAPSCSL
                     LHSPVDLAREDKLDAELASWLAFAVQKCQEVAVLAKALREPQTAEVQAALAESNAVQA
                     SRAASPRIHKPAVQARLAAVTAADSRRQSPFATRIELQRARLKLPAFPTTTIGSFPQT
                     SAIRLARQSFKAGKLSAADYTEAMHSEIRHAVSIQEQLGLDVLVHGEAERNDMVEYFA
                     EQLDGYAFTRFGWVQSYGSRCVKPAIIYGDLARPKPMTVEWIEYAQRCTDKLMKGMLT
                     GPVTMLMWSFPRDDISREQQARQLALAIRDEVVD"
BASE COUNT          554 a         1116 c         1141 g          529 t
ORIGIN      
        1 gtgtcctatt cagcggcgaa gttcggcctg cgtggcttca gcgaggcgct gcgcggcgag
       61 ctgaccgact ggccgggcat ccatgtctgc gatgtctacc cagcggtgat cgataccccc
      121 ggcttccgtg acggcggcaa ctacagcggc catgccctga ccccgccacc gccgcgttac
      181 gacccgcgtg aggtggcggc gaccatggtg cgcctggccc tgcacccgcg cgccagcagc
      241 acggtcggcg gcatggcgca cctgctgcgc ctggcgcatt tcctggtgcc gggtttcgcc
      301 cagctggccg gctgggggac ggcgcgcgcc atcggccggg cgcggcacac gccggtgtcc
      361 tcgggcaatt tgttccatcc gccgctgggg cagcgtcgca tcgacggtgg ctggcgtcag
      421 cccgcgtcga agcagaccag tacgctgctg gcacttggcg ccctgggcgc ggcggcagcg
      481 ggctggtacc tggtgcgccg gctcaacggt tcttcgtggc ggcgctgaca ccctcgaggg
      541 tggcgaagga cgtgtccttg gcagtgagca ggaagtcgcg catgaacggc gcgtcgagca
      601 tgtcggcacg gatgcccgca tagagcgtgg cgtacaggcc cttctcgccg aggcgcttgg
      661 cggtcacgta gccgcgcgag ctgtattcgt gcagcgccca gttgggcagg ctgcacacgc
      721 cgcggccgct ggccacaagc tgcatcatca tcaccgtcag ctcggaggtg cgcacttgcg
      781 ccggttcgac gtcggccggc tcgaggaagc gcgagaagat gtccaggcgg tcgcggtcga
      841 tcgggtaggt gatcagcgtc tcccgctcca ggtcctcggg cagcacgtag gagcggccgg
      901 ccagcgcgtg ctggttggcc accgccagca gggcctcgta ggtgaacagc ggcacgtagg
      961 tgataccggc cagttccatc gggtcggagg tcaccaccag gtcgagatcg ccgcgggcca
     1021 gcgccggcag cggggcgaag gagaagcccg aggccaggtc cagctccacc tccggccagg
     1081 catcgcggaa ctggtcgatg gtcggcatca gccactggaa gcagctgtgg cattcgatgg
     1141 ccatgtgcag ccgtcccgcg gtcccaccgg ccagccgcgc caggtcgcgc tccgcggcac
     1201 gcaactgcgg cagcaggctg tcggccagtt gcagcaggcg caggccggcg ctggtgaaac
     1261 gcaccggctt ggtcttgcgc acgaacaact gcatccctaa gcgctcctcc agttccttga
     1321 actggtggga cagcgccgac tgggtcagat gcaggcgttc ggcggcctcc accaggctgt
     1381 cggtctcacg cagggcgtgc agggtcttga ggtggcgcag ttccaacatg agcggatctc
     1441 aatgaataaa acttgtgatg atcgagaata tgttgagttt gtctcatgac aaggtcggtg
     1501 tcgagaatgt gcgccatcga cgaacaccgg agacagacaa atggcattgg cacacaacct
     1561 cggcttcccg cgcatcggcg gcgaccgcga actgaagaaa gccgtggagg cctactggaa
     1621 gggcgaactg gacgaggccg gcctgcgcgc cgtgggccgc caactgcgcg ccgcccactg
     1681 gcagatccag aaggacgccg gcatagagct gctgccggtc ggcgacttcg cctggtacga
     1741 ccaggtactg acccactcgc tgaccttcgg cgtgattccc gagcgcttcc acgtccacgg
     1801 cggcaagccg ggtctggaca cgctgttcgg catggcgcgt ggggtttctg gaaacaccag
     1861 cagccacaac acctgctgcg gcggtgctca cgcccaggag atgaccaagt ggttcgatac
     1921 caactaccac tacctggtac ccgaattctc cgccgatcag cagttcgccc tgagctggga
     1981 gcagctgttc gaggaggtgg aggagggtaa ggccctgggc cacaacctca agccggtgct
     2041 gatcggcccg ctgacttatc tgtggctggg taaggaaaaa ggtggcgact tcaatcgtct
     2101 cgatctgctc gagcgtctgc ttccagtcta cggcgagatc cttcagcgcc tggccgccca
     2161 gggcatcgag tgggtacaga tcgacgagcc gattctcgcc ctcgacctgc cgcaggcctg
     2221 gaagaacgcc ttcgagcgtg cctacaacct gctgcagaag gagccgggca agaagctgat
     2281 cgccacctac ttcgccggcc tggaagacaa cctcggcctg gccgccggcc tgccggtgga
     2341 cggcctgcac atcgacctgg tgcgcgcgcc ggagcaattc ccggccattc tcgaccggct
     2401 gccggcctac aaggtgctct cgctcggcgt ggtcaacggc cgtaacgtct ggcgtaccga
     2461 tctgcagaag gccctggccg tgctgcagca ggcccatgag cgcctgggct cgcggctgtg
     2521 ggtggcgccg agctgctcgc tgctgcacag cccggtggac ctggcccgcg aggacaagct
     2581 ggacgccgag cttgcgagct ggctggcctt cgccgtgcag aaatgccagg aggtcgccgt
     2641 gctggccaag gcgctgcgcg agccgcagac cgccgaggtg caggccgcgc tggccgagag
     2701 caacgccgtg caggccagtc gcgccgcctc gccacgtatc cacaagccgg ccgtgcaagc
     2761 ccgtctggcg gccgttaccg cggccgacag ccggcgccag tcgccgtttg ccacccgcat
     2821 cgaactgcag cgggcccggc tgaagctgcc ggcattcccg accaccacca tcggctcttt
     2881 cccgcagacc tcggccatcc gcctggcgcg ccagtcgttc aaggccggca agctgtccgc
     2941 ggccgactac accgaggcca tgcacagcga gatccgccac gcggtgagca tccaggagca
     3001 actgggcctg gacgtgctgg tgcacggcga ggccgagcgc aacgacatgg tcgagtactt
     3061 cgccgagcag ctcgacggct acgccttcac ccgcttcggc tgggtgcaga gctacggctc
     3121 gcgctgcgtg aagccggcga tcatctatgg cgacctggcg cgtcccaagc cgatgacggt
     3181 ggagtggatc gagtacgccc agcgctgcac cgacaagctg atgaagggca tgctgaccgg
     3241 cccggtgacc atgctgatgt ggtcctttcc gcgcgacgat atttcccgcg agcagcaggc
     3301 gcgccagctg gccctggcca tccgcgacga ggtggtcgac
//
LOCUS       DATIHC010000800         2257 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_24363, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000800 DATIHC010000000
VERSION     DATIHC010000800.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24363"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..383
                     /locus_tag="VLF16_13330"
     CDS             <1..383
                     /locus_tag="VLF16_13330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HSX71904.1"
                     /translation="VRALYEWIVDNDCTPHLLVNAEFPGVSVPAGYASDGQIVLNVSP
                     SAVRNLHMDNEAVSFEGRFGGIAHSLYIPSAAMLAIYARENGQGMVFELEPPVDDDEE
                     GPEPDGDGPEPPRPSGRPSLKVVK"
     gene            complement(447..980)
                     /locus_tag="VLF16_13335"
     CDS             complement(447..980)
                     /locus_tag="VLF16_13335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012274071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HSX71905.1"
                     /translation="MTRNPLILVTLALGLVLAGCSNRSIGNKIDDQFLEPDVANAVSR
                     GHADLASPTSHIVVTAYNGVILLAGQTPRADLKEKAGQIANRVQGVKKLHNEIQVLAP
                     SSLVARSNDAALTSKIKTQMLFDNNVPSAKIKVVTENGIVYLLGIVSRAEGAAATSLV
                     QGVSGVQKIIQLYQYTN"
     gene            complement(977..1570)
                     /locus_tag="VLF16_13340"
     CDS             complement(977..1570)
                     /locus_tag="VLF16_13340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012077201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008968 - D-sedoheptulose 7-phosphate
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoheptose isomerase"
                     /protein_id="HSX71906.1"
                     /translation="MDMQNRIRQMFQASIDTKQQAMEVLIPFIEHASQVMVNSLLNEG
                     KILTCGNGGSAGDAQHFSSELLNRFERERPSLPAIALTTDSSTITSIANDYSYNEVFS
                     KQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPED
                     VEIRVPSKVTARIQEVHLLAIHCLCDLIDRQLFGSEE"
     gene            complement(1697..2062)
                     /locus_tag="VLF16_13345"
     CDS             complement(1697..2062)
                     /locus_tag="VLF16_13345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003302786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HSX71907.1"
                     /translation="MPSINTRQASGRAAEQQALEHLQRHGLRLLTQNWSCRGGELDLV
                     MLDGDTVVFVEVRYRKHAAWGGALESVDARKRQRLILAAELFLQREQRWSRQPCRFDV
                     VAIGPGNSGLNWLRNAFET"
     gene            complement(2049..>2257)
                     /locus_tag="VLF16_13350"
     CDS             complement(2049..>2257)
                     /locus_tag="VLF16_13350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013714139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="penicillin-binding protein activator"
                     /protein_id="HSX71908.1"
                     /translation="GSLGRLYAMGVDAFRLAPRLSQLKALPDSRVEGLSGNLSLNQAQ
                     RIERSLPWAEFRDGQVQRLPDAIH"
BASE COUNT          366 a          678 c          796 g          417 t
ORIGIN      
        1 tggtacgcgc cctctacgag tggatcgtcg acaacgactg caccccgcac ctgctggtca
       61 acgccgagtt tccgggcgtg agcgtgccgg caggctatgc cagcgatggc cagatcgtgc
      121 tcaacgtctc gcccagcgcc gtgcgcaatc tgcacatgga caacgaggcg gtgagcttcg
      181 aggggcgctt cgggggtata gcccacagcc tgtacatccc ctcggccgcc atgctggcga
      241 tctatgcccg ggaaaacggc cagggcatgg tcttcgagct ggagccgccg gtggatgatg
      301 acgaggaagg tccggagccc gacggcgacg gtcccgagcc gccacgcccc agcggcaggc
      361 ccagcctcaa agtggtcaag taacaacgaa aaaaggcgat ccgaggatcg ccttttttcg
      421 tatgtgcggg tgcgaagccg cggcggtcag ttggtgtact ggtacagctg gatgatcttc
      481 tgcacgccgg aaacgccctg caccaggctg gtggcggcgg cgccttcggc gcgactgacg
      541 atgcccagca ggtagacgat accgttctcg gtcaccacct tgatcttggc gctcggcaca
      601 ttgttgtcga acagcatctg cgtcttgatc ttgctggtca gagcggcgtc gttgctgcgc
      661 gccaccagcg agctgggggc cagcacctga atctcgttgt gcagcttctt cacgccctgc
      721 acgcgattgg cgatctgtcc ggccttctcc ttgagatcgg cgcgcggtgt ctgcccggcc
      781 agcaggatca cgccgttata ggcggtcacc acgatgtgcg aggtcgggct ggcgaggtcg
      841 gcgtggccgc gggagaccgc gttggctacg tcgggctcga ggaactggtc gtcgatcttg
      901 ttgccgatgc tgcggttgct gcagccggcc aggaccaggc cgagggcaag ggtaacgagg
      961 atcagcggat tgcgggtcat tcttcactcc cgaaaagttg acggtcgatc aggtcgcaca
     1021 ggcagtggat ggcgagcagg tgcacttcct gaatgcgtgc ggtgactttg gacggtacgc
     1081 ggatctccac gtcctccggc agcagcagcg aggccatgcc gccgccgtcg cggccggtca
     1141 gggcgaccac cagcatctcg cggtcgtggg cggcctggat ggcctggatc acgttggccg
     1201 agttgccgct ggtggagatc gccagcagca cgtcgccggg ttggcccagg gcgcggatct
     1261 gcttggaaaa cacctcgttg tagctgtagt cgttggcgat cgaggtgatg gtcgagctgt
     1321 cggtggtcag ggcgatggcc ggcaggctgg ggcgttcgcg ctcgaagcgg ttgagcagct
     1381 cggacgagaa gtgctgggcg tcgccagccg agccgccgtt gccgcaggtg aggatcttgc
     1441 cctcattgag cagcgaattg accatcacct ggctggcgtg ctcgatgaag gggatcagga
     1501 cttccatggc ctgctgcttg gtgtcgatgc tggcctggaa catctggcga atgcggttct
     1561 gcatatccat ggaggaaacc ttaggtgtgc tggctgagac agccggaaga gtcggaagtc
     1621 gccggtgcgc gcgatggacg aggttttacc tgagggaggc gccgcgggtc gacttgaaat
     1681 ccttgatcgg gcctattcac gtttcgaaag cgttgcgtag ccagttcagt ccgctattgc
     1741 cggggccgat cgccaccacg tcgaagcggc agggctgcct gctccagcgc tgctcgcgct
     1801 gcaggaacag ctcggcggcg aggatcaggc gctgacgctt gcgggcgtcg acgctctcca
     1861 gggcgccgcc ccaggccgca tgcttgcgat agcggacttc gacgaatact actgtatcgc
     1921 cgtcgagcat gaccagatcg agctcgccgc cgcggcagct ccagttctgc gtcagcaggc
     1981 gcaggccgtg ccgctgcaga tgctcgagcg cctgctgctc ggcggcgcgt ccgctggcct
     2041 ggcgggtatt aatggatggc atccggcagg cgctgcacct ggccgtcgcg gaactcggcc
     2101 cagggcaggc tgcgctcgat gcgctgggcc tgattcaggc tcaggttgcc agagaggcct
     2161 tctacgcggc tgtccggcag cgctttcagc tgactcaggc gcggagcgag gcggaaggcg
     2221 tcgacgccca tcgcgtagag gcggcccagg ctgccgg
//
LOCUS       DATIHC010000801         3149 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34866, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000801 DATIHC010000000
VERSION     DATIHC010000801.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3149
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34866"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1298)
                     /locus_tag="VLF16_13355"
     CDS             complement(<1..1298)
                     /locus_tag="VLF16_13355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013981769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indolepyruvate ferredoxin oxidoreductase family
                     protein"
                     /protein_id="HSX71909.1"
                     /translation="MSLAEIRLDDKYRVATGQLYLTGTQALTRLPMLQKQRDAAFGLN
                     TACFISGYRGSPLGNLDKSLWEAKQFLQENHIHFQPGVNEELGATAVWGSQQANLFPG
                     ARYDGVFAMWYGKGPGVDRCGDVFKHGNSAGVAEKGGVLLLAGDDHGCKSSTIAHQSE
                     HAFIAASIPVLNPANVQEILDYGIIGWELSRYSGCWVALKTIAENVDSSAVVEVDPLR
                     VDIKLPTDFQLPEDGVHIRWPDPPLAQEKRLNQFKIYAARAFALANDLNQIKLDSPNP
                     RLGIITTGKSYLDVRQALNDLGLDDELCAQVGLRVLKVGMSWPLEPVSVHQFAEGLDE
                     ILVVEEKRSIIEDQLTGQLYNWPVGKRPRVVGEFDEEGNSLLPNLAELTPAMIARVIA
                     KRLAPIYTSATIDERLAFLAAKEAALAAPKHDTKRTPHFCS"
     gene            1497..1964
                     /locus_tag="VLF16_13360"
     CDS             1497..1964
                     /locus_tag="VLF16_13360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017679111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HSX71910.1"
                     /translation="MQEKLSPIDRRILRLLQHDADLSAAEIAEKVELSQSPCWRRIHR
                     MQEEGLIERKVALLNPKKLGLGITVFVDIKLSAHGRNNLDEFEQAVVGYPQVLECHTM
                     AGGSDYLLKVVAKDIADYERFLRDHLLQRPHVQEAHSHIAMSEVKRTTELPLD"
     gene            2150..>3149
                     /locus_tag="VLF16_13365"
     CDS             2150..>3149
                     /locus_tag="VLF16_13365"
                     /inference="COORDINATES: protein motif:HMM:NF024700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSX71911.1"
                     /translation="MRVRLDRITVNHFKRIESLEIDLQPVTALVGGNTSGKSSALQAA
                     QLGVSILQAAFRGIRANGMPDFAGTVANDAVLFRPTERLLDLRRGDSATQNLGYSITY
                     RGVDLDTNADKHITLEIRRGKNANIAITRAGDDDLAAVLANSVRPFSIFTPGLSGIPI
                     REEWRTKGSMDAAVMHGDANLYLRTVLDHLFTRDLDEMARTAWRRDSDISLLPDSGWK
                     TFSRLLERCYPGTRVIVSHDPLRDRYVKVEVKTSDTTVTLDMASTGMLQVIQIIAYAC
                     FYAPPLILLDEPDAHLHADSQTRLYDALRSVAAETRTRILFASHSPQLIQRLMYDPD"
BASE COUNT          631 a          924 c          970 g          624 t
ORIGIN      
        1 gagcagaagt gcggggtgcg cttggtgtcg tgcttgggcg cggccagcgc ggcttccttg
       61 gcggcgagga aggccaggcg ctcgtcgatg gtggcgctag tgtagatcgg tgccaggcgc
      121 ttggcgatga cgcgggcgat catcgccggg gtcagctcgg ccaggttcgg cagcagcgag
      181 ttgccctcct cgtcgaactc gccgaccacg cgcggacgct tgccgaccgg ccagttgtac
      241 agctggccgg tgagctggtc ctcgatgatg ctgcgcttct cctcgaccac caggatctcg
      301 tccaggccct cggcgaactg gtgcaccgac accggctcca gcggccagct catgccgacc
      361 ttgagcacgc gcaggcccac ctgggcgcac agctcgtcgt ccaggccgag gtcgttcagc
      421 gcctggcgca cgtccaggta ggacttgccg gtggtgatga tgcccaggcg cgggttgggc
      481 gaatcgagct tgatctggtt caggtcgttg gccagggcga aggcccgggc ggcgtagatc
      541 ttgaactggt tgaggcgctt ttcctgggcc aggggcgggt ccggccagcg gatgtgcacg
      601 ccgtcttccg gcagctggaa gtcggtcggc aacttgatat cgacgcgcag cgggtcgacc
      661 tcgaccacgg ccgaggaatc gacgttctcg gcgatggtct tcagcgccac ccagcagccg
      721 ctgtagcgcg acagctccca gccgatgatg ccgtagtcga ggatttcctg gacgttggcc
      781 gggttcagca ccgggatcga cgcggcgata aaggcgtgct cgctctggtg cgcgatggtg
      841 gaggacttgc agccgtggtc gtcgccggcc agcagcagca cgccaccctt ctccgccacg
      901 ccggccgagt tgccgtgctt gaacacgtcg ccgcagcggt ccacgccagg ccccttgccg
      961 taccacatgg cgaacacgcc gtcgtagcgc gcaccgggga acaggttggc ctgctggctg
     1021 ccccacacgg cggtagcgcc cagctcttcg ttgacgccgg gctggaagtg gatgtggttt
     1081 tcctggagga actgcttggc ctcccacagg ctcttgtcga ggttgcccag gggcgacccc
     1141 cggtagccgg agatgaagca ggcggtattc aggccgaagg cggcatcacg ctgcttctgc
     1201 agcatgggca gacgggtcag ggcctgggta ccggtgaggt acagctggcc cgtggctaca
     1261 cggtatttgt cgtccagacg gatttcggcc agagacatgg ggcgcgctcc ttttgttctt
     1321 gtggtgagcg aggcgtgccg cttaggcact gccgttgaac cctggcgcgg gatcaccgcg
     1381 acgggtcgtt gccaaaacta tgaccgaggg gttctggctt tttctttctt tttttgagcg
     1441 gcaagcggga tactgcgcat gagttatccc gccatgacaa ataaagagaa gaattcatgc
     1501 aggaaaaact gagccctatc gaccgccgca tccttcgtct gctgcaacac gacgccgacc
     1561 tctccgccgc ggagatcgcc gaaaaggtgg agctgtcgca atcgccctgc tggcggcgca
     1621 tccaccgcat gcaggaagaa gggctgatcg aacgcaaggt cgccctgctc aacccgaaga
     1681 agctcggcct gggcatcacg gtgttcgtcg acatcaagct ttcggcccac ggccgcaata
     1741 acctggacga gttcgaacag gcggtggtcg gctaccccca ggtgctggag tgccacacca
     1801 tggccggcgg ctcggattac ctgctcaagg tggtggccaa ggacatcgcc gactacgaac
     1861 gcttcctgcg cgaccacctg ctgcagcggc cgcatgtgca ggaagcgcac tcgcatatcg
     1921 ctatgagtga ggtgaagagg actacggagt tgccgttgga ttgagcggcc cactagggcc
     1981 gctatcaaga attgagtatc tgtggcttct tacggtagaa atgacagcca agtaagtggc
     2041 cgaaatgctc ctcctaaaaa ttgaagagtg agcttcggct atgagtcaag cggtatcaca
     2101 agtaactcgt acatcaacat attcagtcga tatgttctaa ggaagaaaca tgcgagttcg
     2161 actcgataga atcaccgtca atcacttcaa gcgaatagag tcattggaaa ttgacttgca
     2221 accagtgact gcgctggttg gcggtaatac gagtggtaaa agcagcgccc tgcaggcggc
     2281 gcagctcggt gtatcgatct tgcaggcagc ttttcgaggt atccgcgcga acggaatgcc
     2341 cgacttcgca ggtacagtcg ccaacgatgc agtgttgttc cgaccgactg agcgactgct
     2401 ggatttgagg cgtggagata gcgcgacgca gaatctcggc tactcaatta cctacagagg
     2461 cgtagatctc gacacaaacg cggacaagca tataacgctc gaaatacgcc gcggcaagaa
     2521 cgcaaatatc gccatcactc gtgcgggaga tgacgacctc gcagccgttt tggcaaacag
     2581 tgttcgccca ttctcaatat ttacgcctgg cttatccgga atcccgatcc gcgaagaatg
     2641 gcggacaaag ggatcgatgg acgccgcagt catgcacggt gacgccaacc tctatctacg
     2701 caccgttctt gatcatcttt tcacacgcga tttggatgag atggcgagga ctgcttggcg
     2761 ccgagatagc gatattagcc tcttaccaga cagcggatgg aagaccttct ctcggcttct
     2821 tgagcgctgc tatccaggca cacgagtcat agtaagtcac gatccactac gtgatcgcta
     2881 cgtaaaggtc gaagtcaaaa catctgacac tacggtcacg ctcgacatgg cgtcgactgg
     2941 catgctccaa gtcattcaga tcatcgccta tgcctgcttc tatgcccccc cgttgattct
     3001 gctggacgag cccgatgctc acctacatgc cgatagccag acgcgactct atgatgcgct
     3061 tagaagtgtt gcggctgaga cacgaacccg cattctgttt gccagccatt cgcctcaact
     3121 gatccaacgc ctcatgtacg accctgacg
//
LOCUS       DATIHC010000802         1582 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34871, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000802 DATIHC010000000
VERSION     DATIHC010000802.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1582
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34871"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..717)
                     /locus_tag="VLF16_13370"
     CDS             complement(<1..717)
                     /locus_tag="VLF16_13370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HSX71912.1"
                     /translation="MKVDLHCHSTASDGVLAPAEVVARAHGRGVELLALTDHDTLEGL
                     DEARRAADGLGMRLVNGVELSCTWGGATIHVLGYAFATDAPALRQAIEDLHQGRWLRA
                     EEIDRRLAAKGMPGALEGARAIQQGLGDSGNAPARPHFAEFLVRAGHVRDHAEAFRKW
                     LGSGKLGDVKQHWPSLEQAVGTLRSAGAWISLAHPWQYDFTRSKRRRLVADFLAAGGH
                     ALEVVNGLQPAEQVGGLAILA"
     gene            784..1374
                     /locus_tag="VLF16_13375"
     CDS             784..1374
                     /locus_tag="VLF16_13375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012700194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HSX71913.1"
                     /translation="MKQFIDFIPLILFFIVYKLDPRTVELAGQTFELGGIFSATAVLI
                     ISSIVVYGILFLLQRKLEKSQWLTLLACLIFGSLTLAFHSETFLKWKAPVVNWLFAAG
                     FLGSHFIGDKVLIQRVMGHAVNLPQPIWTRLNLAWVAFFIFSGCANLFVAFTFHDIWV
                     DFKVFGSLGMTVLFLVAQGVYLARHIHDETPQQSKD"
     gene            1376..>1582
                     /locus_tag="VLF16_13380"
     CDS             1376..>1582
                     /locus_tag="VLF16_13380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HSX71914.1"
                     /translation="MLYAIIASDAPESLEKRLATRPAHLARLEQLKNEGRLVLAGPHP
                     AIDSNDPGPAGFSGSLVVAEFESLA"
BASE COUNT          244 a          565 c          493 g          280 t
ORIGIN      
        1 ggccaggatg gccaggccgc cgacctgctc ggcaggctgc aggccgttga ccacttccag
       61 cgcgtggccg ccggcggcga ggaagtcggc caccaggcga cggcgcttgc tgcgggtgaa
      121 atcgtactgc cagggatgcg ccaggctgat ccaggcgccg gcggagcgga gcgtgccgac
      181 cgcctgctcc aggctcggcc agtgctgctt gacgtcaccc agcttgccgg agcccagcca
      241 cttgcgaaac gcctcggcgt ggtcacgcac gtgcccagca cgcaccagga actcggcgaa
      301 gtgcgggcgc gccggtgcgt tgccgctatc gcccaggccc tgctggatcg cccgcgcacc
      361 ttccagggcg ccgggcatgc ccttggcggc caggcgccgg tcgatttcct cggcgcgcag
      421 ccaacggccc tgatgcagat cctcgatggc ctggcgcagc gccggggcgt cggtggcgaa
      481 ggcatagccg agcacgtgga tagtcgcgcc accccaggtg caggacagct ccacgccgtt
      541 gaccaggcgc atgcccagcc cgtcggcggc acgccgcgct tcgtccagcc cttcgagggt
      601 gtcgtggtcg gtcagcgcca gcagttccac accacgacca tgggcgcgcg caaccacttc
      661 cgccggcgcg agaacgccgt cggacgcggt gctgtggcag tgcagatcga ccttcatggg
      721 cgcgtctttc gttaatgggg ttgtttgtta ttatgccgcc acatcccgct tctggctgcc
      781 gcagtgaaac aattcatcga tttcatcccg ctcatcctgt tcttcatcgt ctacaagctc
      841 gatccccgta ccgtcgaact ggccggccag accttcgagc tgggcggcat cttcagcgcc
      901 accgcggtgc tcatcatcag ttcgatcgtg gtgtacggca tcctgttcct cttgcagcgc
      961 aagctggaga agagccagtg gctgacgctg ctggcgtgcc tgatcttcgg cagcctgacc
     1021 ctggccttcc acagcgagac cttcctcaaa tggaaggcgc cggtggtcaa ctggctgttc
     1081 gccgcaggct tcctcggcag ccacttcatc ggcgacaagg tgctgatcca gcgcgtcatg
     1141 ggccatgccg tgaacctgcc gcagcccatc tggacgcgcc tgaacctggc ttgggtggcg
     1201 ttcttcatct tcagcggctg cgccaacctg ttcgtcgcct tcaccttcca cgacatctgg
     1261 gtcgacttca aagtcttcgg cagccttggc atgaccgtgc tgttcctggt cgcccagggc
     1321 gtctacctgg cgcgccacat ccacgacgaa accccgcagc aaagcaagga ctgacatgct
     1381 ctacgccatc attgccagcg atgcccccga gtccctggag aagcgcctgg ctacccgccc
     1441 cgcccacctg gcccgcctgg agcagctgaa gaacgagggc cgcctggtgc tggccggccc
     1501 tcatccggcc atcgacagca acgacccggg cccggccggc ttctccggca gcctggtggt
     1561 cgccgaattc gagtccctcg cc
//
LOCUS       DATIHC010000803         2235 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4531, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000803 DATIHC010000000
VERSION     DATIHC010000803.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2235
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4531"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..368
                     /locus_tag="VLF16_13385"
     CDS             <1..368
                     /locus_tag="VLF16_13385"
                     /inference="COORDINATES: protein motif:HMM:NF023367.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3459 domain-containing protein"
                     /protein_id="HSX71915.1"
                     /translation="YTRRLIEVRRSCPEFGLGRHEFIEYDGGSEVLAESYCLDDGQVV
                     CVHNLSRQARQVRVRHPGMADRDCYELIARRRLRADPIGWLTVELPAYGCTWWRIGSI
                     FSPAESGASVANALAEAPS"
     gene            complement(340..1299)
                     /locus_tag="VLF16_13390"
     CDS             complement(340..1299)
                     /locus_tag="VLF16_13390"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03885 family FMN-dependent LLM class
                     oxidoreductase"
                     /protein_id="HSX71916.1"
                     /translation="MPVIGYHASHEQFPPGELLQLMQLAERAGFDAGMCSDHFHPWSE
                     DQGHSGFAWSWLGAALQGTGFDLGVVNTPCFRYHPALIAQATATLAEMYPGRFWLSVG
                     SGEAINESITGERWPIKPERNARLAEAVAIIRALWAGEEVSRCGLLTVERARLYSLPQ
                     TPPALYAAVLSEETAHWAGGWADGMITVSSTVEKQQRIIDAFREGGGEGKPLLLQVKL
                     SYAEDDDEALRGAHQQWRTNVLPGSLTQELRSVADFEAAAGTVRPQDLCEQVRIGSDL
                     AWHADRLRQDIAQGFERIYLHNVNRHQRGFIEAFASSVLPQVR"
     gene            1490..1903
                     /locus_tag="VLF16_13395"
     CDS             1490..1903
                     /locus_tag="VLF16_13395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012075866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HSX71917.1"
                     /translation="MKVREIMSREVRTIAPSTSLREAAELMRKVDIGALIVNDDDRMS
                     GVLTDRDIVIRAVADGLDMSTPVSQVMSGEVCYCFDDEEVDHIAKNMAQIEKRRLPVV
                     NREKRLVGIVSLANIATVNTDKLSANLLRGVARMH"
     gene            complement(1922..>2235)
                     /locus_tag="VLF16_13400"
     CDS             complement(1922..>2235)
                     /locus_tag="VLF16_13400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71918.1"
                     /translation="FDRNGIVPDEAERGRRAGENGERGNTMNGWQRLWMLCSILWTGV
                     VLFYVAQTWQMRDRESLLNWNLLAEALLGLIVPILGSYLLGLLLARLRRSRRASGKHL
                     P"
BASE COUNT          371 a          788 c          738 g          338 t
ORIGIN      
        1 actacacccg ccgcctcatc gaggtgcgtc gctcctgccc cgaattcggc ctggggcggc
       61 acgagttcat cgaatatgac ggcggcagcg aggtcctcgc cgagagctac tgcctggacg
      121 acggccaggt ggtgtgtgtg cacaacctgt cgcgccaggc ccgccaagtc cgcgtgcgtc
      181 accccggcat ggccgaccgc gactgctacg agctgatcgc acggcgccgg ctgcgcgccg
      241 accccatcgg ctggctgacg gtggaactgc cggcctacgg ctgcacctgg tggcgcatcg
      301 gctcgatctt ctcgccggcc gagagcggcg ccagcgtggc taacgcactt gcggaagcac
      361 cgagctagcg aaggcttcga tgaagccacg ctggtggcga ttgacgttgt gcaggtagat
      421 ccgctcgaag ccctgcgcga tgtcctggcg caggcggtcg gcgtgccacg ccaggtcgct
      481 accgatgcgc acctgctcgc acaggtcctg ggggcgcacg gttccggcgg cggcctcgaa
      541 gtccgccacg ctgcgcagtt cctgggtcag ggagccgggc agcacgttgg tccgccactg
      601 ttggtgggcg ccgcgcaggg cctcgtcgtc gtcctcggca taggacagct tgacctgcag
      661 cagcaacggc ttgccttcgc cgccgccctc gcggaaggca tcgatgatgc gctgctgctt
      721 ctccaccgtg gagctgacgg tgatcatgcc gtccgcccag ccgccggccc aatgcgcggt
      781 ctcctccgac agcaccgccg cgtagagcgc cggcggcgtc tgcggcaggc tgtacaggcg
      841 cgcccgctcg accgtcagca ggccgcagcg cgacacctcc tcacccgccc atagcgcgcg
      901 gatgatcgcc accgcctcgg ccagccgcgc gttgcgctcg ggcttgatcg gccagcgctc
      961 gccggtgatg gactcgttga tcgcctcgcc gctgcccacc gaaagccaga agcgccccgg
     1021 gtacatctcg gccagggtcg cggtggcctg ggcgatcagc gccgggtggt agcggaagca
     1081 cggcgtgttg accacgccca ggtcgaagcc ggtaccttgc agcgccgcgc cgagccagga
     1141 ccaggcgaag ccgctgtggc cctggtcctc gctccagggg tggaaatggt ccgagcacat
     1201 gccggcgtcg aagccggcgc gttccgcgag ctgcatcagc tgcagcagct cgccgggggg
     1261 aaactgttcg tgggaggcgt ggtatccgat cacgggcatg aggtcacctg gtcgtgcggc
     1321 tggctctcta tcgaggaagc cgtctggctc ggagttccgc ccgcaggatg ggcggcaccg
     1381 accattcgga gatccacccg aactctgcgc ggccccgggc ttcaacacta ggtaacgcgg
     1441 attcgcagac cgctgcgaac gaacccactc cagccccagg agaaccatca tgaaagtgcg
     1501 agaaatcatg agccgcgaag tgcgcaccat cgccccgtcc accagcctgc gcgaggccgc
     1561 cgagctgatg cgcaaggtcg acatcggcgc gctgatcgtc aacgacgacg accgcatgag
     1621 cggcgtgctg accgaccgcg acatcgtcat ccgcgcggtg gccgacggcc tggacatgtc
     1681 caccccggtg agccaggtga tgagcggcga ggtgtgctac tgcttcgacg acgaagaggt
     1741 cgaccacatc gccaagaaca tggcgcagat cgagaagcgc cggctgccgg tggtcaaccg
     1801 cgagaagcgc ctggtcggca tcgtctcgct ggccaacatc gccaccgtca ataccgacaa
     1861 gctcagcgcc aacctgctgc gcggcgtggc gcgcatgcac taatggcgaa cacccggcgc
     1921 gctacggcag gtgcttgccg gatgcgcgcc gggaccggcg caagcgtgcc agcagcaggc
     1981 cgagcaggta gctgcccagg atcggcacga tcaggccgag tagcgcctcg gccagcaagt
     2041 tccagttgag caggctctcg cgatcccgca tttgccatgt ctgcgcgacg taaaacagca
     2101 ccacgcccgt ccacaggatg gaacacagca tccacagccg ctgccatcca ttcatcgtat
     2161 tcccgcgctc cccgttctcg cctgctcgcc tgccccgctc cgcctcgtcg ggtacaatgc
     2221 cgttccggtc aaagc
//
LOCUS       DATIHC010000804         3081 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37230, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000804 DATIHC010000000
VERSION     DATIHC010000804.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3081
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37230"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..532)
                     /locus_tag="VLF16_13405"
     CDS             complement(<1..532)
                     /locus_tag="VLF16_13405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71919.1"
                     /translation="MNPLTVLRDSFHFFSRHLAAIAPLCLPLIAAECLVRALVSAMVD
                     PLHAPAYELLVGLFFYPLYSAALILYLDARTTGQRPAVRNLLAASLPLWPSFAVLAAL
                     TTLLIMLSGALFLPLALWVMVKLAFAEYVLVLRGAAPLQAMRESFLLSVGHFWSLLAC
                     VLLVIVPLWLLDDWTLQ"
     gene            643..1122
                     /locus_tag="VLF16_13410"
     CDS             643..1122
                     /locus_tag="VLF16_13410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003228475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HSX71920.1"
                     /translation="MKRIALFADVQNLYYTVRQAHGCHFHYAELWRQVTALGEIVEAR
                     AYAIDRGDAKQRQFQQILRDLGFEVMLKPYIQRSDGSAKGDWDVGIALDLIEAAERVD
                     EVVLASGDGDFDLLLQRARDRHGVSCTVYGVEGLTAQSLIRAADRFVPVAGALLLKH"
     gene            1260..1865
                     /locus_tag="VLF16_13415"
     CDS             1260..1865
                     /locus_tag="VLF16_13415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009681781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HSX71921.1"
                     /translation="MPERIAVIDFETTGMSPAQGARPTEVGVAVIEEGRIVARYQSLM
                     NAGAWVSPFIEQLTGISNAMVRGAPPVAEVMAEVAEFVGDVPMLAHNAAFDSKFWDAE
                     LGLLGRRRARDFACSLLLSRRLLPEAPSHSLGNLNRWVGLPSTGRAHRALADAEMAAN
                     LCLHLQGLLWERHDIRADHGYLCGLQKLSAAKVRALLRASV"
     gene            complement(2077..>3081)
                     /gene="prfC"
                     /locus_tag="VLF16_13420"
     CDS             complement(2077..>3081)
                     /gene="prfC"
                     /locus_tag="VLF16_13420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HSX71922.1"
                     /translation="GHGHERTEQKVIDKLDSDEARAHLGDMYDNFVDELELVQGACHE
                     FDQAAFLKGEMTPVFFGTALGNFGVDQVLDCIVDWAPKPLSRAAHERVVEPVEEKFSG
                     FVFKIQANMDPKHRDRIAFMRICSGKYEKGMKMRHVRIKKDLKIADALTFFSSEREQL
                     EEAYAGDIIGLHNHGTIQIGDTFTEGEVLGFTGIPHFAPELFRRVRLKDPLKSKQLRQ
                     GLQELAEEGATQVFFPERNNDIILGAVGVLQFDVVASRLKEEYKVECAYEAINVWSAR
                     WIECSDEKKLKEFKDKAYENLAVDGGGHLTYLAPTRVNLSLMEERWPDVKFRATREHH
                     "
BASE COUNT          505 a         1022 c         1048 g          506 t
ORIGIN      
        1 gttgcagggt ccagtcgtcg agcagccaca gcggcacgat caccagcagc acgcaggcca
       61 gcagcgacca gaagtggccg acgctgagca ggaagctctc gcgcatcgcc tgcaacggcg
      121 cggcgccgcg cagcaccagg acgtattcgg cgaacgccag cttgaccatc acccacagtg
      181 ccagcggcag gaacagcgcc ccgctgagca tgatcagcag ggtggtcagc gccgccagca
      241 cggcgaacga cggccacagc ggcaggctgg ccgccagcag gttgcgcacg gcggggcgct
      301 ggccggtggt gcgggcgtcg agatagagga tcagcgcggc gctgtacaac gggtagaaga
      361 acagcccgac cagcaactcg taggccggcg catgcaacgg gtcgaccatg gcggaaacca
      421 gcgcccgcac caggcactca gcggcgatca gcggcaggca cagcggcgcg atggcggcca
      481 ggtggcggct gaagaaatgg aaggagtcgc gcagaacggt caacgggttc atcggcaggc
      541 atcgcatctg tacggcatga attcacttta gccgatggtc gggggccacg aacatgctgg
      601 ccaatggcgc ataatgccgc tcccttcgcc cggccctgac tcgtgaaaag aatcgccctg
      661 ttcgccgatg tgcagaacct ctactacacc gtgcgccagg cccatggctg tcacttccac
      721 tacgccgagc tgtggcgcca ggtaacggcg ctgggcgaga tcgtcgaggc gcgtgcctat
      781 gccatcgacc gtggcgatgc caagcagcgc cagttccagc agatcctccg cgacctcggc
      841 ttcgaggtga tgctcaagcc ctatatccag cgcagcgacg gctcggccaa gggcgactgg
      901 gacgtgggta tcgcgctgga cctgatcgag gccgccgagc gcgtggacga ggtggtgctg
      961 gcctccggcg acggcgactt cgacctgctg ctgcagcgcg cccgtgaccg ccacggcgtg
     1021 agctgcaccg tgtacggcgt cgagggcctg accgcacaat cgctgatccg cgccgcggac
     1081 cgcttcgtgc cggtcgccgg cgccctgctg ctgaaacact gagcatgcgc tgcgcgtcgg
     1141 agacggcctg ggtcgccggc ccggtcggca tgcgtgcggg tgttgtgtaa actccgcgcc
     1201 ctcaaccatc cagtgcctgc tttcgctcgc gagggcacga aacgctccga ggaagaccga
     1261 tgcccgaacg catcgccgtg atcgacttcg aaaccaccgg catgtcgccg gcccagggcg
     1321 cgcgcccgac cgaggtcggc gtggccgtga tcgaggaagg gcgcatcgtc gcgcgctacc
     1381 agagcctgat gaatgccggc gcctgggtgt cgccgttcat cgagcagctc accggcatca
     1441 gcaacgccat ggtgcgcggc gcgccgccgg tcgccgaggt gatggccgag gtggccgagt
     1501 tcgtcggcga tgtgccgatg ctggcgcaca acgccgcctt cgacagcaag ttctgggacg
     1561 ccgagctggg cctgctcggc cgccgccggg cgcgggactt cgcctgctcg ctgctgctct
     1621 cgcgccgcct gttgccggag gcgccgagcc acagcctggg caacctcaac cgctgggtcg
     1681 ggctgcccag caccggccgc gcccaccgcg cgctggccga cgcggagatg gcggccaacc
     1741 tgtgcctaca tctgcaaggc ttgctgtggg agcgccacga tatccgtgcc gaccacggct
     1801 acctgtgcgg cctgcagaag ctctcggcgg ccaaggtgcg cgcgctgctg cgggccagcg
     1861 tctaacgttc ctttcccttg cgggctggag gtgccaggcc gcatcgagct ttcattacca
     1921 tctgaaagca gcggtgcgca tggcgcaccc tacggctcga gcgagcgacg aggtggggtg
     1981 tagggtgcgc cgtgcgcacc aggcggcccg gcaataaacc acgctcacaa acgaaacgcc
     2041 ccggcagggc cggggcgtgt gtgcagcgga ggtgtatcag tggtgctcgc gggtggcgcg
     2101 gaatttcacg tccggccagc gctcttccat caggctcagg ttcacccggg tcggcgccag
     2161 gtaggtgagg tggccaccgc catccaccgc caggttctcg taggccttgt ccttgaactc
     2221 cttgagcttc ttctcgtcgc tgcactcgat ccagcgcgcc gaccagacgt tgatcgcctc
     2281 gtaggcgcac tcgaccttgt attcctcctt caggcggctg gcgaccacat cgaactgcag
     2341 cacaccgacg gcgccgagga tgatgtcgtt gttgcgctcg gggaagaaga cttgcgtcgc
     2401 gccttcctcg gccagttcct gcaggccctg gcgcagctgc ttggacttca gcgggtcctt
     2461 caggcgcacg cggcggaaca gttccggggc gaagtgcggg atgccggtga agcccagcac
     2521 ctcgccctcg gtgaaggtat cgccgatctg gatggtgccg tggttgtgca ggccgatgat
     2581 gtcgccggcg taggcctctt ccagctgctc gcgctcgctg gagaagaagg tcagggcgtc
     2641 ggcgatcttc aggtccttct tgatgcgcac gtggcgcatc ttcatgccct tctcgtactt
     2701 gcccgagcag atgcgcatga aggcgatgcg gtcgcggtgc ttcgggtcca tgttcgcctg
     2761 gatcttgaat acgaagccgc tgaacttctc ttctaccggc tcgaccacgc gctcgtgggc
     2821 ggcgcgcgac agcggcttcg gcgcccagtc gacgatgcag tcgagcacct ggtctacacc
     2881 gaagttgccc agcgcggtgc cgaagaacac cggggtcatc tcgcccttga ggaaggcggc
     2941 ctggtcgaac tcgtggcagg cgccctggac cagttccagc tcgtcgacga agttgtcgta
     3001 catatcgccg aggtgcgcgc gggcttcgtc ggagtccagc ttgtcgatca ccttctgctc
     3061 ggtacgctcg tggccgtggc c
//
LOCUS       DATIHC010000805         2413 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11555, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000805 DATIHC010000000
VERSION     DATIHC010000805.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2413
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11555"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1140)
                     /gene="dsbD"
                     /locus_tag="VLF16_13425"
     CDS             complement(<1..1140)
                     /gene="dsbD"
                     /locus_tag="VLF16_13425"
                     /EC_number="1.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047134 - protein-disulfide reductase
                     (NAD(P)) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HSX71923.1"
                     /translation="MRRLLPLFLLLFTLPALAGLFDDPAPRGVIDDAPLNNSADFLPV
                     REAFRLSLVSADAQSVKLRFVNAEGYYLYRHRFEFRIEPSDLAKGEAVLPAGEPKHDE
                     YFGDVEVYYGITDVTLPIDNPIDLPFTVHVSYQGCADKGLCYPPETERIEVDGQGKAQ
                     TTRPAEAPAPAQTGWTWKELALFFLGGLALTFTPCVLPMLPILTGVVLRGQPGGARSL
                     VLSLAYVLPMAISFAILGALMGLFGAELNLQARLQSPWVLVPFAAFFALFGAASLGFF
                     ELRLPAALDGPLQGLSQRLKGGTVFSAAALGVLSSLLVSPCVSAPLAGALLYISASGD
                     ALGGGLKLLALGLGMGAPLVLFAVGGGTLLPKSGPWMVTVRNAFGA"
     gene            complement(1254..>2413)
                     /locus_tag="VLF16_13430"
     CDS             complement(1254..>2413)
                     /locus_tag="VLF16_13430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014336389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098561 - methyl accepting chemotaxis
                     protein complex [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSX71924.1"
                     /translation="AASAARVDGLQQALAALEPEVRAEHGRIQFEVRLVQGLVIGLIL
                     LIALGLDRIQRRLSNLLGRLAPELGAWAAGDFSGEVKLDSRTREIRDIEDSLNRLRRY
                     LVELVGTIHQHAGEVAGSSRVLAEMSQSLHGGAERQLADTALIRDSLGELEATIAQVA
                     EDASQAANASHDASRAVEHGQRVIEQSLAGLHALVGEVQGNAQSIEQLAAETATIGSV
                     LTVIRGVADQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTSGATEEIQQLIA
                     RLQNAAQQSVTAMRAQVEHAEATAGQAEQADGALDEVVVAIRTIASMAQRIAEATAQQ
                     GGAASEIRDHSERIHNLGGDNLERIGDGRAQGEQLLQLGGRLNTAVQAFRV"
BASE COUNT          349 a          813 c          911 g          340 t
ORIGIN      
        1 cgcgccaaag gcattgcgca cggtcaccat ccatgggccg gatttcggta gcagcgtgcc
       61 gccgccgacg gcgaacagca ccagtggcgc gcccatgccc aggcccaggg ccagcagctt
      121 gaggccgccg ccgagggcgt cgccgctggc gctgatatag agcagggcac cggccagcgg
      181 cgcggacacg caaggcgaga ccagcaggct ggagagcacg ccgagcgccg ccgcgctgaa
      241 gacggtgccg cccttcaggc gctggctcag gccctgcaat gggccgtcga gggcggcggg
      301 caggcgcagc tcgaagaagc ccaggctggc ggcgccgaac agggcgaaga aggcggcgaa
      361 gggcaccagc acccagggcg attgcaggcg cgcctgcagg ttgagctcgg cgccgaacag
      421 gcccatcagc gcgccgagga tggcaaagct gatcgccatc ggcagcacgt aggccagcga
      481 cagcaccagg ctgcgcgcgc cgcccggctg gccgcgcaga accacgccgg tgaggatcgg
      541 cagcatcggc agcacgcagg gcgtgaaggt cagggccagg ccgccgagga agaacagcgc
      601 cagctccttc caggtccagc ccgtctgcgc cggtgcgggt gcttcggccg ggcgggtggt
      661 ctgcgccttg ccctggccgt cgacttcgat gcgctcggtc tccggcgggt agcacaggcc
      721 cttgtcggcg cagccctggt agctgacgtg cacggtgaag ggcagatcga tggggttgtc
      781 gatcggcagg gtcacgtcgg tgatgccgta atacacctcg acgtcgccga agtactcgtc
      841 gtgcttgggc tcgccggccg gcagcacggc ctcgcccttg gccaggtcgc tgggctcgat
      901 gcggaactcg aagcgatggc ggtagaggta gtagccctcg gcgttgacga agcgcagctt
      961 caccgactgg gcgtcggcgc tcaccaggct gaggcggaag gcctcgcgca cgggcaggaa
     1021 gtcggcgctg ttgttcagcg gggcgtcgtc gatgacgccg cgcggggcgg gatcgtcgaa
     1081 caggccggcc agggcgggca gggtgaacag cagcaggaac aggggcagca gacggcgcat
     1141 gacgggctcg cacgacggac ttggccggca tcatacccaa gtcggacggt gagccccagg
     1201 cgacgcgctg gcgcagggcg ttaacggata ttgccggccg atgtgcggcg gggtcagacg
     1261 cggaaggcct gcaccgccgt attcaggcgt ccacccagct gcagcagttg ctcgccctgg
     1321 gcgcgaccgt cgccgatgcg ttccaggttg tcgccgccca ggttgtggat gcgttcgctg
     1381 tggtcgcgga tctcgctggc ggcgccgccc tgctgggcgg tggcctcggc gatgcgctgg
     1441 gccatgctgg cgatggtgcg gatggccacg accacctcgt ccaatgcacc gtccgcctgt
     1501 tcggcctggc cggcggtggc ctcggcgtgc tcgacctggg cgcgcatggc ggtgaccgat
     1561 tgctgggcgg cgttctgcag gcgggcgatc agttgctgga tctcctcggt ggcgccgctg
     1621 gtgcgctggg ccagcgagcg cacctcgtcg gcgaccacgg cgaaaccacg cccggcctcg
     1681 ccggcgcgag ccgcctcgat ggcggcgttc agcgccagca ggttggtctg gtcggccacg
     1741 ccgcggatca ccgtcagcac cgagccgatg gtggccgtct cggcggccag ctgttcgatg
     1801 gactgcgcat tgccctgcac ctcgccgacc agcgcgtgca acccggccag gctctgttcg
     1861 atcacccgct ggccgtgctc gacggcgcgg ctggcgtcgt ggctggcgtt ggcggcctgg
     1921 ctggcatcct cggcgacctg ggcgatggtc gcctccagtt cgccgagcga atcgcggatc
     1981 agcgccgtgt cagccagctg gcgctcggcg ccgccgtgca ggctctggct catctcggcc
     2041 agcacgcggc tgctgccggc gacctcgccg gcgtgctggt ggatggtgcc caccagctcc
     2101 accaggtagc gacgcaggcg attgagcgag tcttcgatgt cgcgtatctc gcgggtacgc
     2161 gagtccagtt tcacctcgcc ggagaagtcg ccggcggccc aggcgccgag ttccggcgcc
     2221 aggcgcccga gcaggttgct gaggcgacgc tggatgcggt ccaggcccag ggcgatgagc
     2281 aggatcaggc cgatcaccag gccctggacc aggcgcacct cgaactggat gcggccatgc
     2341 tcggcacgca cctccggctc cagcgcggcc agggcctgct gcaggccgtc gacgcgggcg
     2401 gcgctggccg cgg
//
LOCUS       DATIHC010000806         1518 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_45431, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000806 DATIHC010000000
VERSION     DATIHC010000806.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45431"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..673)
                     /locus_tag="VLF16_13435"
     CDS             complement(<1..673)
                     /locus_tag="VLF16_13435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003239927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HSX71925.1"
                     /translation="MTATAPAPSHDAIVRDSWSRCRDFGLTHQSQPAFGQAAPGEVSA
                     LLESQHFLVQTTHQEVLPYYENILANSNCLIMLADNQGQLLQSWGDRRFVEPAQAAGF
                     VPGALWQERHSGTNAIGTALACGQAVHIQRDEHFLKANRFMTGSASPIFDAARQMIGV
                     LDVSSDSYLPPAHTLGMVKMMSQSVENRLILNLFKDDYFQLSFNTSLDNLDSQWAGLL
                     VFDEAG"
     gene            1051..>1518
                     /locus_tag="VLF16_13440"
     CDS             1051..>1518
                     /locus_tag="VLF16_13440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010490229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSX71926.1"
                     /translation="MSLTLEHVCRVVDQQIYIDDACLSFEAGSFNVLVGRTLAGKTSL
                     MRLMAGLDKPTSGRILMHGADVTGVPVRQRNVSMVYQQFINYPNLTVFENIASPLRQA
                     GVAKAEIERKVHETAAMLRIEKFLKRYPLELSGGQQQRTAMARALVKDADLVLF"
BASE COUNT          247 a          457 c          529 g          285 t
ORIGIN      
        1 gtccggcctc gtcgaacacc agcaggccgg cccactggct gtccaggttg tccaggctgg
       61 tgttgaagct gagctggaag tagtcgtcct tgaacaggtt gaggatcagc cggttctcca
      121 ccgactggct catcatcttg accatgccca gtgtgtgggc gggcggcagg tagctgtcgc
      181 tggagacgtc gagcacaccg atcatctgcc gggcggcgtc gaagatcggc gaggccgagc
      241 cggtcatgaa gcggttggcc ttgaggaagt gctcgtcgcg ctggatgtgc accgcctggc
      301 cgcaggccag cgccgtgccg atggcgttgg tgccgctgtg gcgttcctgc cagagcgcgc
      361 cgggcacgaa gccggcggcc tgggccggct cgacgaagcg gcgatcgccc caggactgca
      421 gcaactggcc ctggttgtcg gccagcatga tcaggcagtt ggagttggcc aggatgttct
      481 cgtagtaggg cagcacctcc tggtgggtgg tctgcaccag gaagtgctgg ctctccagca
      541 gggcggagac ctcgccgggc gcggcctggc cgaaggccgg ctggctctgg tgggtgaggc
      601 cgaagtcgcg gcagcggctc caggaatcgc gaacgatggc gtcgtggctc ggcgccgggg
      661 cagtagcagt catgggtatc gcctggttct tgtctttatt aggtccagcg gccgtgtcgg
      721 cctcgccgtt actgcaatgg gcgggccggt gggagcgtcg tggctcccgg cccgcgctca
      781 tgggcgtgag cggggcgagc ggttcgccca gtgttgttca ttgctgttca aagtcaaagg
      841 ccgaattgtt cagttgttca gctttcgctg ttcaaaactg ttcaacgtga gcggcgctac
      901 acatcgcatc cgacgggctt gtctttgcaa atcaagggca tggtggattt tcgcttgcgc
      961 gcaacggcac tggcacgaat gtcgccttat gtcagggccg accgcgaggc atcttcgcgg
     1021 cggcgggcga aataaccata aggacacgcc atgtcgttaa cgctggaaca tgtctgccgc
     1081 gtggtcgacc agcagatcta tatcgacgac gcctgcctga gcttcgaagc gggctccttc
     1141 aacgtgctgg tgggccgcac gctcgccggc aagacgtcgc tgatgcgcct gatggccggg
     1201 ctcgacaagc ccaccagcgg ccgcatcctg atgcacggcg ccgatgtcac cggcgtgccg
     1261 gtgcgccagc gcaacgtgtc gatggtctat cagcagttca tcaactatcc gaacctgacg
     1321 gtcttcgaga acatcgcctc gccgctgcgc caggccggcg tggccaaggc cgagatcgag
     1381 cgcaaggtgc acgagacggc ggcgatgctg cgcatcgaga agtttctcaa gcgctacccg
     1441 ctggagctgt ccggcggcca gcagcagcgc acggccatgg cccgcgcgct ggtcaaggat
     1501 gccgacctgg tgctgttc
//
LOCUS       DATIHC010000807         5288 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11557, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000807 DATIHC010000000
VERSION     DATIHC010000807.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5288)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5288)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5288
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11557"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..263)
                     /locus_tag="VLF16_13445"
     CDS             complement(<1..263)
                     /locus_tag="VLF16_13445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HSX71927.1"
                     /translation="MVPVIALVGRPNVGKSTLFNRLTKTRDAIVAEYAGLTRDRQYGE
                     AKWQGRTYIVIDTGGISGDEEGIDAKMAEQSLQAIEEADAVLF"
     gene            complement(333..1484)
                     /gene="bamB"
                     /locus_tag="VLF16_13450"
     CDS             complement(333..1484)
                     /gene="bamB"
                     /locus_tag="VLF16_13450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011063204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamB"
                     /protein_id="HSX71928.1"
                     /translation="MRDVMRWKNAAVLALAVLAVGCSSNSKKELPPNELPDIQEEVRL
                     DEQWSRSIGDGQGELYNLLTPAADGDRLYAAAANGDVVALDRLTGDKFWEVELDLPVS
                     GGVGAGYGLVLVGTLKGEVVALDASSGEERWRARVTSEVLSAPATNGDVVVVQTQDDR
                     LIAFDAASGEQRWIYENSPAVLTLRGTSSPVMTNRLVMAGLSSGKILALDASRGIPVW
                     EQRVAVPQGRSELERVVDIDGNLLLSGGTLYAVTYQGKVAAFDVESGRPLWNRDASSY
                     VGLAQGFGNVYVSLANGALESIDERSNSALWSNDALLRRQLSAPEVFSSYVAVGDFEG
                     YVHLLSQVDGHFAGREKVDGDGVRARPLVIGDWMYVYGNSGKLVGLTIR"
     gene            complement(1477..2118)
                     /locus_tag="VLF16_13455"
     CDS             complement(1477..2118)
                     /locus_tag="VLF16_13455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020795609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSX71929.1"
                     /translation="MSMTEDEQIAQLKDWWQRNGKPLLTGGVLALALVVGWQAWQQYQ
                     ENQAQGGGALYQQLLETTLTPTGEPDVGKVTELADKLKKEYAGTHYAQYASLFVAKVA
                     VDSGKLDDAAAELQPLLKDPADVTVGELARQRLARVLAAQGKTEEGLKLLDGEADKAW
                     QASREELKGDLLAQLGRGDEAHAAYEKAKAALSEEAAVGGLQMKLDDLAKGDA"
     gene            complement(2146..3432)
                     /gene="hisS"
                     /locus_tag="VLF16_13460"
     CDS             complement(2146..3432)
                     /gene="hisS"
                     /locus_tag="VLF16_13460"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HSX71930.1"
                     /translation="MSKTLQAIRGMNDILPEQTPAWRYLERSFAELLDGYGYSEIRLP
                     ILEFTELFARGIGEGTDVVDKEMYTFLDRNGESLTLRPEGTAGCVRAVLEHGLSGGGQ
                     VQKLWYTGPMFRYEKPQKGRYRQFHQIGVEVFNLPGPDIDAELIILTWRLWQKLGMAD
                     AVTLQLNTLGSSEARARYREALVAFLQDRFDQLDEDSQRRMTTNPLRILDSKVESTQA
                     LLVGAPTLHDYLDEESIAHFEGLKARLDAVGLRYEINQKLVRGLDYYCRTAFEWVTDK
                     LGAQGTVCGGGRYDGLVSQFGGKPTPGVGFAMGVERLVLLLETLGVVPAELNRPADLY
                     LCAFGEAAELAGLGLAERLRDAIPGVRLLVNAGGGSFKSQFKKADKSGARFALILGED
                     EVTARVVGCKPLRDDAQQQNIAWDALPAHLAACLQA"
     gene            complement(3578..4690)
                     /gene="ispG"
                     /locus_tag="VLF16_13465"
                     /gene_synonym="gcpE"
     CDS             complement(3578..4690)
                     /gene="ispG"
                     /locus_tag="VLF16_13465"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010952070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HSX71931.1"
                     /translation="MHCESPIKRRPSRKIWVGSVPVGGDAPIAVQSMTNTETCDVAAT
                     VGQIQRLEAAGADIVRVSVPSMEAAEAFGQIKRQVNLPLVADIHFDYQIALRVAELGV
                     DCLRINPGNIGREDRVRAVVEAARDKGIPIRIGVNAGSLEKDLQKKYGEPTPEALVES
                     ALRHVEHLDRLNFPDFKVSVKASDVFMAVEAYRLLAKQIEQPLHLGITEAGGLRSGTV
                     KSAVGLGMLLADGIGDTIRISLAADPVEEIKVGFDILKSLRLRSRGINFIACPSCSRQ
                     NFDVVKTMNELEQRVEDLLVPLDVAVIGCVVNGPGEAKEAHIGLTGGTPNNLVYIDGA
                     PASKLTNDNLVDELEKLIRRKAAEKVEADAAVIARG"
     gene            complement(4699..>5288)
                     /locus_tag="VLF16_13470"
     CDS             complement(4699..>5288)
                     /locus_tag="VLF16_13470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003113802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RodZ domain-containing protein"
                     /protein_id="HSX71932.1"
                     /translation="LEHVEVESADGTTEIHPLAEPEDQAVADAQGEVPAIEPPADVPT
                     QAEAPSATADGTAEQAPPVTSEEIAQAPSPATGTAETAAPAAAEPQAATAEPNAEAAE
                     PQAQTQAPVAPAAGEALVNLQFTADCWTQLTDADGKVLLSALKRRGDSVELAGKAPLD
                     LHLGFARGAVVLVNGQPVDVAPFIRGETARLKLGQ"
BASE COUNT          797 a         1776 c         1765 g          950 t
ORIGIN      
        1 atgaacagca ccgcatcggc ttcctcgatg gcctgtagcg actgctcggc catcttcgca
       61 tcgatgccct cctcgtcgcc ggagatgccg ccggtatcga tgacgatgta ggtgcgcccc
      121 tgccacttcg cctcgccgta ctggcgatcg cgggtcagcc cggcgtactc cgcgacgatg
      181 gcgtcgcggg tcttggtcag gcggttgaac agcgtcgact tgccgacgtt ggggcggccc
      241 accagggcga ttacaggaac catcgacata tacctcagaa aacacaaagg ccgctgccgt
      301 aaaacggcag cggccggaca ttgctcaaca gcttagcgga tggtcaggcc gaccagcttg
      361 ccgctgttgc cgtagacgta catccagtcg ccgatcacca gcggacgcgc gcgcacgccg
      421 tcaccgtcga ccttctcgcg accggcgaag tggccgtcga cctggctcag caggtgcaca
      481 tagccctcga agtcgccgac cgccacgtag ctggagaaca cttccggtgc ggacagctgg
      541 cgacgcagca gggcgtcgtt gctccacagc gcggaattgg agcgctcgtc gatgctttcc
      601 agcgcgccgt tggccaggct gacgtagacg ttgccgaagc cctgggccag gcccacgtag
      661 ctcgaggcat cgcggttcca cagcggacgg ccgctttcca cgtcgaacgc ggcgaccttg
      721 ccctggtagg tcacggcata cagggtgcca ccggagagca gcaggttgcc gtcgatgtcg
      781 acgacgcgct ccagctcgga gcggccctgc ggcacggcca cgcgctgctc ccataccggg
      841 atgccgcggc tggcatcgag cgccaggatc ttgccgctgg acaggccggc catcaccagg
      901 cgattggtca tcaccgggct gctggtgccg cgcagggtca aaacggccgg gctgttctcg
      961 tagatccagc gctgctcacc ggaggcggcg tcgaaggcga tcaggcggtc gtcctgggtc
     1021 tgcaccacga cgacgtcacc attggtggcc ggggcggaca gcacttcgct ggtgacgcgg
     1081 gcgcgccagc gctcttcacc gctgctggca tccagggcga cgacttcacc cttgagggtg
     1141 ccgaccagta ccaggccgta gccggcaccg acgccaccgg agaccggcag gtccagttcg
     1201 acttcccaga acttgtcacc ggtcaggcga tccagcgcga ccacgtcgcc attggcggcg
     1261 gcggcgtaca ggcgatcacc gtcggcggcg ggagtcagca ggttgtagag ctcgccctgg
     1321 ccgtcgccga tggagcggct ccactgctcg tccaggcgca cttcttcctg gatgtccggc
     1381 agttcgttcg gcggcagttc cttcttgctg ttgctgctgc aacccacggc caatacggcc
     1441 agggccagca ctgcggcatt cttccagcgc atcacgtcac gcatcccctt tcgccaggtc
     1501 gtcgagtttc atctgcagac cgcccacggc ggcttcttcg gacagcgcgg ccttggcctt
     1561 ctcgtaggcg gcatgcgcct cgtcgccacg accgagctgg gccagcaggt cgcccttgag
     1621 ttcttcgcgg ctggcctgcc aggccttgtc ggcctcgcca tccagcagct tgaggccttc
     1681 ctcggtcttg ccctgagcgg ccagtacccg ggccagacgc tgacgcgcca gctcgccgac
     1741 ggtgacgtcg gccggatcct tcagcaaggg ttgcagctcg gccgcggcgt catccagctt
     1801 gccgctgtcg accgccacct tggcgacgaa tagactggcg tactgggcgt agtgggtgcc
     1861 ggcgtattct ttcttcagct tgtcggcgag ctcggtgacc ttgccgacat ccggctcgcc
     1921 cgtgggagtg agcgtggtct ccagcagttg ctgatacaac gcgccgccac cctgggcctg
     1981 attctcctgg tactgctgcc aggcctgcca gccgaccacc agggccagcg ccagcacgcc
     2041 gccggtcagc aggggcttgc cgttgcgctg ccaccagtcc ttcagctgcg caatctgttc
     2101 gtcttcggtc atgctcaccc caataactcc ttattcgctt tgttctcagg cctgcaggca
     2161 ggcggccagg tgcgcgggca gcgcatccca ggcgatgttc tgttgctgtg cgtcgtcgcg
     2221 caggggtttg caacctacca cgcgggcggt cacttcgtcc tcacccagaa tcagggcgaa
     2281 gcgggcgccg ctcttgtcgg ccttcttgaa ctggctcttg aagctgccgc cgccggcatt
     2341 gaccaacagg cgcacgccgg gaatggcgtc gcgaagacgc tcggccaggc ccaggccggc
     2401 gagctccgcg gcctcgccga aggcgcagag gtagaggtcg gccggacggt tcagctcggc
     2461 cggcaccaca ccgagggtct ccagcagcag caccaggcgc tccacgccca tggcgaagcc
     2521 cacacccggg gtcggcttgc cgccgaactg gctgaccagg ccgtcgtagc gaccgccgcc
     2581 gcagacggtg ccctgagcac cgagcttgtc ggtgacccac tcgaaggcgg tgcggcagta
     2641 gtagtcgagg ccgcgcacca gcttctggtt gatctcgtag cgcaggccga ccgcgtccag
     2701 ccgggccttg agaccctcga agtgggcgat cgactcctcg tcgaggtagt catgcagggt
     2761 cggcgcgccg accagcaggg cctgggtgct ctccaccttg ctatcgagga tgcgcagcgg
     2821 gttggtggtc atgcgccgct gactgtcttc gtcgagttgg tcgaagcggt cctggaggaa
     2881 ggccaccagc gcctcgcggt agcgcgcgcg ggcttcgctg gaacccaggg tgttaagctg
     2941 cagggtcacg gcatcggcca tgccgagctt ctgccacagg cgccaggtga ggatgatcag
     3001 ctcggcgtcg atgtccggcc cgggcaggtt gaagacttcc acgccaatct ggtggaactg
     3061 gcggtagcgg cccttctgcg gcttctcgta gcggaacatc gggccggtgt accacagctt
     3121 ctgcacctgg ccaccgccgg acaggccgtg ttcgagcacg gcgcgcacgc agcccgcggt
     3181 gccttcgggg cgcagggtga gggattcgcc gttgcggtcg aggaaggtgt acatctcctt
     3241 gtcgaccacg tcggtgccct cgccgatacc gcgggcgaac agctcggtga attcgaggat
     3301 gggcaggcga atctcgctgt agccgtagcc atccagcagc tcggcgaagc tgcgctccag
     3361 gtagcgccag gccggagtct gttccggcag gatgtcgttc atgccacgga tggcttgcag
     3421 ggtcttgctc acgaatattc cttaaacccg ctctcgacgc ggctgcgctt gctcatgcag
     3481 cgtctaaaac gggctcaaaa tgctgacgta aaccgcgctt ttgtcttctt ctttcttgcc
     3541 tgacccgcgc tcgcgacgtg tcgagagcag gtgtgaatca gccgcgggcg atcaccgccg
     3601 cgtcggcctc gaccttctcg gccgccttgc ggcggatgag cttctccagc tcgtccacca
     3661 ggttgtcgtt ggtcagtttc gaggccgggg cgccgtcgat gtagaccaga ttgttcggtg
     3721 tgccgccggt gaggccgata tgcgcctcct tggcctcgcc cggtccgttg accacgcagc
     3781 cgatcaccgc gacatcgagc ggcaccagca ggtcctcgac ccgctgttcc agctcgttca
     3841 tggtcttgac cacgtcgaag ttctgtcgcg agcagctcgg gcaggcgatg aagttgatgc
     3901 cacgcgagcg caggcgcagg gacttgagga tgtcgaagcc gaccttgatc tcttccacgg
     3961 ggtcggcggc cagggagatg cggatggtgt cgccgatgcc gtcggccagc agcatgccca
     4021 ggccgaccgc cgacttcacg gtgccggagc gcaggccacc ggcctcggtg atgcccaggt
     4081 gcagcggctg ctcgatctgc ttggccagca gccgataggc ctcgacggcc atgaacacgt
     4141 cggaggcctt cacgctgacc ttgaagtcag ggaagttcag gcgatcgagg tgctcgacgt
     4201 ggcgcagcgc ggattccacc agcgcctcgg gcgtcggctc gccgtatttt ttctgcaggt
     4261 ccttctccag cgagccggcg ttgacgccga tgcggatcgg gatgcccttg tcgcgcgccg
     4321 cctcgaccac cgccctgacg cggtcctcac ggccgatgtt gcccgggttg atgcgcaggc
     4381 agtcgacgcc cagctcggcc acgcgcaggg cgatctgata atcgaagtga atgtccgcca
     4441 ccagcggcag gttgacctgg cgcttgatct gaccgaacgc ctcggccgcc tccatggacg
     4501 gtacggagac gcgcacgata tcggcgccgg cggcttcgag gcgctgtatc tggccgaccg
     4561 tggcggcgac gtcgcaggtc tcggtgttgg tcatgctctg cacggcgatc ggcgcatcgc
     4621 cgccgaccgg taccgagccg acccagatct tgcgggacgg gcgacgcttg atgggagatt
     4681 cgcaatgcat gttctggctc actgccccag cttgaggcgt gcggtttcac cgcggatgaa
     4741 gggagcgacg tcgaccggct gaccattgac cagcaccacg gcgccacggg cgaagcccag
     4801 gtgcaggtcc agcggcgcct tgccggccag ttcgacgctg tcaccgcggc gcttgagcgc
     4861 gctgagcagc accttgccgt cggcgtcggt gagctgggtc cagcaatcag cggtgaactg
     4921 cagattgacc agcgcttcgc cggcggccgg cgcgaccggg gcctgggttt gcgcctgcgg
     4981 ctcggcagct tcagcgttcg gctccgcagt ggcggcctgc ggctcggccg ccgccggcgc
     5041 agcggtctcg gctgttccgg tcgcaggcga cggcgcctgt gcaatctctt cggacgtcac
     5101 cggcggcgct tgctcggcag tgccgtctgc ggttgcggat ggcgcctcgg cctgggtagg
     5161 gacatcggcc ggcggttcga tggccgggac ttcgccctgc gcgtcggcta ccgcctggtc
     5221 ttcgggctcg gccagcggat gaatctcggt ggtgccatcg gcactttcga cctcgacatg
     5281 ctcgagac
//
LOCUS       DATIHC010000808         1629 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37242, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000808 DATIHC010000000
VERSION     DATIHC010000808.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1629
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37242"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..200
                     /locus_tag="VLF16_13475"
     CDS             <1..200
                     /locus_tag="VLF16_13475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71933.1"
                     /translation="AHGIARFDSRHEWQAEVLFLHGRLDYYWQWCVTAPGRITALLPF
                     ATPMQLRLLPGASEPCPAPRR"
     gene            complement(208..576)
                     /locus_tag="VLF16_13480"
     CDS             complement(208..576)
                     /locus_tag="VLF16_13480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015096195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71934.1"
                     /translation="MSRHLPVVLLLLVLPLWLAASYGVRFALMEDSQWVGTCVEQAAR
                     WECQARAGLGYLIHFRVISWTALVLAVLAFVVPGKAGRVLAGLALFFGIPALVLYSAS
                     LAVFALVLAGLRLVRAERAA"
     gene            749..>1629
                     /locus_tag="VLF16_13485"
     CDS             749..>1629
                     /locus_tag="VLF16_13485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013714412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HSX71935.1"
                     /translation="MSRLAPCAALLCGLLFGAPALAADIDVASYGYPLANPFEATIAT
                     TPPELRSKVPSDDDIDQADYDLKLRPEREFELPDNFWPVKKLRYRLAEQSGRAPLIFI
                     ISGTGASYASGKTEDLKRLFYGAGYHVVQLSSPTSYDFMSAASRTATPGLSGPDAEDL
                     YRVMIAVRAQHPELEVSDFHLTGYSLGALNAAFVAELDDRLRSFNFKRVLLLNPPVNL
                     YTSVSNLDRLVQTRVKGIDNRTTYFELVLNKLTRYFEEQGYVDLNEALLYDFQQSGQR
                     LSDEQLAMLIGSSFRFSV"
BASE COUNT          304 a          598 c          486 g          241 t
ORIGIN      
        1 atgcccacgg catcgcgcgc ttcgacagtc gccacgaatg gcaggccgaa gtgctgtttc
       61 tgcacggccg cctggactac tactggcaat ggtgcgtgac ggcgccggga cggatcaccg
      121 ccctgctgcc gttcgccacg ccgatgcaac tgcgcctgtt accgggagcg tccgagccct
      181 gcccggcacc ccggcgctag aagaggatca ggcggcgcgc tcggcccgca ccaggcgcag
      241 cccggccagc accagggcga ataccgccag gctggcgctg tacagcacca gggccgggat
      301 gccgaagaac agcgccaggc cggccagcac ccgaccggcc ttgcccggca cgacgaaggc
      361 cagcacggcc agcaccagcg cggtccagga aatcacccga aaatggatca gatagcccag
      421 cccggcgcgg gcctggcatt cccagcgtgc ggcctgctcc acgcaggtgc ccacccactg
      481 gctgtcctcc atcagcgcga aacgcacgcc atagctggcc gccagccaga gcggcaacac
      541 cagcaacagc agtacaacgg gcaagtgacg ggacatgggg tggcgctccg gcgatccgaa
      601 aaggcgccca gcttaatgcg cccgcgccag agcgcaagac cgaatcacgg tcgccgaacg
      661 ccctctcgat gcaagtgaaa cgagacggca cttgcgcttg tcataagccg ggtattcact
      721 ttctcggtct ctgccaagga atccggccat gtcccgtctc gccccttgtg ccgccctgct
      781 ctgcggcctg ctgttcggcg cgcccgcgct ggcggccgac atcgatgtcg ccagctacgg
      841 ttatccgctg gccaacccct tcgaagcgac catcgccacc acgccacccg agctgcgctc
      901 caaggtgccc agcgacgatg acatcgacca ggccgactac gacctcaaac tccgccccga
      961 gcgcgaattc gagctgccgg acaacttctg gccggtgaag aagctgcgct accggctggc
     1021 cgagcagagt ggccgcgcgc cgctgatctt catcatctcc ggcaccggcg ccagctacgc
     1081 cagcggcaag accgaggacc tcaagcgtct gttctacggc gccggctatc acgtggtgca
     1141 gctgtcctcg ccgaccagct acgacttcat gagcgccgct tcgcgcaccg ccacgccggg
     1201 gctctccggg cccgacgccg aggacctgta ccgggtgatg atcgccgtgc gcgcccagca
     1261 cccggagctg gaggtcagcg atttccacct caccggctac agcctgggcg cgctcaatgc
     1321 ggccttcgtc gccgaactgg acgaccgcct gcgcagcttc aacttcaagc gcgtgctgct
     1381 gctcaaccca ccggtcaacc tctacacctc ggtgagcaat ctcgaccgcc tggtgcagac
     1441 gcgagtcaag ggcatcgaca accgcaccac ctatttcgag ttggtgctga acaagctgac
     1501 ccgctacttc gaggagcagg gctacgtcga cctgaacgag gccttgctct acgacttcca
     1561 gcagtccgga cagaggctca gtgacgagca actggccatg ctgatcggca gctcgttccg
     1621 cttctccgt
//
LOCUS       DATIHC010000809         3557 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34895, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000809 DATIHC010000000
VERSION     DATIHC010000809.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3557
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34895"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..658)
                     /locus_tag="VLF16_13490"
     CDS             complement(<1..658)
                     /locus_tag="VLF16_13490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007964533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate cyclase"
                     /protein_id="HSX71936.1"
                     /translation="MTRTQEIRPDINEGIDRKVLAQLRARFLKVNGGRLGRAMQALST
                     RQQLVLKLLPLLFHVNHPLLPGYVSASTPAGLSNYEPDDDTLAEAQRLTRSFAYKPRR
                     TGGGSKPPAPIHGLFLMGSLGTVAQAEQSDMDLWVCHAPDLDARALAELRKKCDLLEA
                     WAATQGAEAHCFLIDPARFTVGDREAQLTSDDCGTTQHYLLLDEFYRTAIWLGGRTPL
                     W"
     gene            complement(790..1032)
                     /locus_tag="VLF16_13495"
     CDS             complement(790..1032)
                     /locus_tag="VLF16_13495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017246184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02647 family protein"
                     /protein_id="HSX71937.1"
                     /translation="MAFTPELIAELEILALYNLDNHQEGLKVHNNASSRNQEAITRLH
                     CKGLVTQADGGYLTSLGLDAAEHAQSLLTILAQKPA"
     gene            complement(1058..1810)
                     /locus_tag="VLF16_13500"
     CDS             complement(1058..1810)
                     /locus_tag="VLF16_13500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003157674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HSX71938.1"
                     /translation="MISRCYRLGLAALLLAACAARADEVFRIGAEDDWYPYTAVRDGE
                     VRGMSADLVRAAFAASNTRVELVPYPYSRCMELTRTGQLAACFNTSPDARIAAEFLLP
                     EEPLFSDDILLWARSGEARPLGDLQAIAGHKVAVTIGYEYGTPFDSLDGVQRVPVRRD
                     LNGFRMLARGRVDYVAAYRGIAAALFAEHSQLRGAFVPVITLHHPQLFISFSRYHPHA
                     RQLLKRYDSGMRSLHRDGSYERIVARWNGRLH"
     gene            complement(1893..2168)
                     /locus_tag="VLF16_13505"
     CDS             complement(1893..2168)
                     /locus_tag="VLF16_13505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013713486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71939.1"
                     /translation="MSEHDDNDDEAFAEQTLIQAIENQLEADAPPATRAVYNKLTLVG
                     YERDEILQLMALVLAHEIDAMLREDRPFDSAWYEQALRALPELPGED"
     gene            2298..2957
                     /locus_tag="VLF16_13510"
     CDS             2298..2957
                     /locus_tag="VLF16_13510"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011336518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043295 - glutathione binding [Evidence
                     IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HSX71940.1"
                     /translation="MLRLHGFPVSNYYNMVHLALLEKGLAFDTAHVYGSQDEAFLAIS
                     PRGKVPVLQTEHGYISETGAILDYLEDLGEGRPLLPAEPFARAQVRALMREIELYIEL
                     PARSCYAEAFFRTPVDAAIKDKARTELQAGIATLKRHGRFAPYVAGEQFGLADLYFLY
                     SIDLAAAVAQRVLGFDLLENFPAAQALLERLRQNPNVQMIAAQNEAAMADFMNHLRSK
                     A"
     gene            complement(2975..3454)
                     /locus_tag="VLF16_13515"
     CDS             complement(2975..3454)
                     /locus_tag="VLF16_13515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015278415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSX71941.1"
                     /translation="MSLHIRPATPDDAALILRLITDLAIYEKAEHEVKTDAAGIRNSL
                     FGDGSTTQALICERDGAPIGYAVYFFNYSTWLGKHGLYLEDLYVDPAHRGCGAGKALL
                     QHLARIAVARGCGRFEWAVLDWNQPAIDFYQSFGARPQDEWTAYRLTGRALLDFAAG"
BASE COUNT          546 a         1140 c         1282 g          589 t
ORIGIN      
        1 accaaagcgg tgtgcggcca ccgagccaga tggcggtgcg gtagaactcg tcgagcagca
       61 ggtaatgctg ggtggtgccg cagtcgtcgg aagtcagctg cgcctcgcgg tcaccgacgg
      121 tgaagcgcgc cggatcgatc aggaagcagt gcgcctcggc gccctgggtc gcggcccagg
      181 cttccagcag gtcgcacttc ttgcgcagct cggcgagggc gcgggcatcc aggtccggcg
      241 cgtggcacac ccacaggtcc atgtcgctct gctcggcctg ggccacggtg cccaggctgc
      301 ccatcaggaa caggccgtgg atcggtgcgg gcggcttgct gccgccgccg gtgcgccgcg
      361 gtttgtaggc gaaggagcgg gtcaggcgct gggcttcggc cagggtgtcg tcgtccggtt
      421 cgtagttcga cagcccggcc ggcgtgctgg cggagacata gcccggcagc agcgggtgat
      481 tgacgtggaa cagcagcggc agcagcttca gcaccagttg ctggcgcgtc gacagcgcct
      541 gcatggcgcg ccccaggcgc ccgccgttga ccttgaggaa acgcgcgcgc agctgcgcca
      601 ggaccttgcg gtcgatgcct tcgttgatgt ccggacggat ttcctgggtg cgggtcatgt
      661 gctgctcgga gcggtggtgg ccgcaagact accagcgccg acgggcgtct ggcagtctcc
      721 tctgtccgct gtatcggccg ctccacggcc cgctgcagtg ccggtgcggg gcgtcgcgcc
      781 ccggtcggcc taggcgggtt tctgcgcgag gatggtcaac aggctctggg catgttcggc
      841 ggcgtccagg ccgaggctgg tcaggtagcc gccgtcggcc tgggtcacca gccccttgca
      901 gtgcaggcgg gtgatggctt cctggttgcg ggacgaggcg ttgttgtgga ccttgaggcc
      961 ctcctggtga ttgtccaggt tgtagagggc gagaatttcc agttcggcga tcaattccgg
     1021 ggtgaaggcc atggcggttt ccttgtcgtt gttcgtgtca gtgtaggcgg ccattccagc
     1081 gcgcgacgat ccgttcgtag ctgccgtcgc gatgcaggct gcgcatgccg ctgtcgtagc
     1141 gcttgagcag ttgccgggcg tgcgggtgat agcgcgagaa gctgatgaac agctgcggat
     1201 gatgaagggt gatgaccggc acgaaggcgc cgcgcagttg tgagtgctcg gcgaacagcg
     1261 ccgcggcgat gccgcggtat gcggcgacat agtcgacccg ccctcgcgcc agcatgcgga
     1321 agccgttgag gtcacgccgc accggcacgc gctgcacgcc gtccaggctg tcgaagggtg
     1381 tgccgtattc gtagccgatg gtcaccgcca ccttgtggcc ggcgatggcc tgcaggtcgc
     1441 cgagcggccg tgcctcgccg ctgcgcgccc agagcaggat gtcgtcgctg aacagcggct
     1501 cctcgggcag caggaattcc gcggcgatgc gcgcgtccgg cgaggtgttg aagcaggccg
     1561 ccaactgccc ggtgcgggtc agctccatgc agcgcgagta ggggtagggc accagttcga
     1621 cgcgggtgtt gctggcggcg aaggcggcac gcaccaggtc ggcggacatg ccgcgcacct
     1681 cgccatcgcg cacggcggtg tagggatacc agtcgtcctc ggcgccgatg cggaacacct
     1741 cgtccgctcg cgccgcacag gcggccagca gcagcgcggc gaggccgagc cggtaacagc
     1801 gcgagatcat gggagggccc ttccgcggcg tggctggtgc caccataaca acagccggtg
     1861 ccgccgggga atagaccaag gtcaaggagc gctcagtcct cgccgggcaa ctccggcagg
     1921 gcgcgcagcg cctgttcgta ccaggcggaa tcgaaggggc gatcctcgcg cagcatggcg
     1981 tcgatctcgt gggccagcac cagggccatc agctggagga tctcgtcgcg ttcgtagcca
     2041 accagggtca gcttgttgta cacggcccgg gtcgccggcg gtgcatcggc ctccagctga
     2101 ttctcgatgg cctggatcag cgtctgctcg gcgaaggcct cgtcatcgtt gtcgtcgtgt
     2161 tcgctcatgg cggctcctcg gtatcgggcc ggcagtgtgc cacggcccgg cggcggctgt
     2221 gccattcacc tgcctgatgg tgctgccgca cggagttcgg caggctataa ctgggttttc
     2281 ccttccggta ccgacccatg ctcagactcc acggatttcc cgtcagcaac tactacaaca
     2341 tggttcacct ggccctgctg gagaaggggc tggcgttcga caccgcccac gtctacggca
     2401 gccaggacga ggccttcctg gccatcagcc cgcgcggcaa ggtgccggtg ctgcagaccg
     2461 aacacggcta catcagcgag accggcgcca tcctcgacta cctggaagac ctcggcgagg
     2521 gccgcccgct gctgccggcc gagcccttcg cgcgggctca ggtgcgtgcg ctgatgcgcg
     2581 agatcgagct gtacatcgag ctgccggcgc gcagctgcta cgccgaggcg ttcttccgca
     2641 ccccggtgga cgcggcgatc aaggacaagg cgcgcaccga gctgcaggcc ggcattgcca
     2701 cactcaagcg ccacggccgc ttcgccccgt atgtggcggg cgagcagttc ggcctggccg
     2761 acctgtactt cctctacagc atcgacctgg ccgccgcggt ggcgcagagg gtcctcggct
     2821 tcgacctgct ggaaaacttc cccgccgccc aggcgctgct ggaacgcctg cggcagaacc
     2881 cgaatgtgca gatgatcgcg gcgcagaacg aggccgccat ggccgacttc atgaatcacc
     2941 tgcgcagcaa ggcttgaagc ccgggcggca gaactcagcc cgcggcgaaa tcgagcagcg
     3001 cccggccggt caggcggtag gcggtccatt cgtcctgcgg gcgggcgccg aaggattggt
     3061 agaagtcgat ggccggctgg ttccagtcca gcaccgccca ctcgaagcgc ccgcagccgc
     3121 gcgccacggc gatccgcgcc aggtgctgca gcagcgcctt gccggcgccg cagccgcgat
     3181 gcgccggatc gacgtagaga tcttccaggt acaggccgtg cttgccgagc caggtggagt
     3241 agttgaagaa gtagacggcg tagccgatcg gcgcgccgtc gcgctcgcag atcagcgcct
     3301 gggtggtcga gccgtctccg aacaggctgt tgcggatgcc ggccgcgtcg gtcttcacct
     3361 cgtgctcggc cttctcgtag atggccaggt cggtgatgag gcgcaggatc agcgcggcgt
     3421 cgtcgggggt ggcggggcgg atatgcaggc tcatgggaga gttctcgaag tattcagcca
     3481 ttgcgaatga tcaggccggc caccaggccg acgaggcaga taaagccgag ggcgatgatc
     3541 cagacgttgc gcggtac
//
LOCUS       DATIHC010000810         5270 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13814, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000810 DATIHC010000000
VERSION     DATIHC010000810.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5270)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5270)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5270
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13814"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1551)
                     /locus_tag="VLF16_13520"
     CDS             complement(<1..1551)
                     /locus_tag="VLF16_13520"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX71942.1"
                     /translation="MYADAEILVVEDSPTQATELQYMLEAVGCKVRVARNGREALEMI
                     AVRKPTIVISDIVMPEMDGYELCRQLKNSAQTQNIPIILVTSLADARDVVHGLASGAD
                     NFIVKPFDEKYLMSRIRYFLINLELRSHERVQMGVEVVLEGERHFITAGRQQILDLLI
                     STYEQGVRLNQELQHKHDELTRTNSLLNCLFHFTSGLTDAKSEHHVINAALRRILEFP
                     DAVGAWLLLGNGGDASRPAEVAGACSRGPSYSPADLERCAQNCPCRHVWVRDRLSQPS
                     NINQCPALSDKPGEGIHASIPLQLSGETIGMLNVVQRDARPWSEESLSALASIGRQLA
                     MALGRVRLFESMEQLVEQRTDALTKSEQLLRKVLDNLPVGVFVTDQQGRLIMSNPESS
                     LIWGGSHPGGNEGYGHYRGWWAETGERITESDWSMMRAVREGKISRNEVIDIETFKGQ
                     RKTILNSAVPFLDANQVIQGAIVVIQDITEQRRRDLEIRTRTRAVEASVNAVIITDAE
                     QPDHPIVYA"
     gene            complement(1556..2614)
                     /locus_tag="VLF16_13525"
     CDS             complement(1556..2614)
                     /locus_tag="VLF16_13525"
                     /inference="COORDINATES: protein motif:HMM:NF013502.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0008984 - protein-glutamate methylesterase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HSX71943.1"
                     /translation="MRVLIVDDSPVTRMLLRAVLEGEGFEVHEAGGGDEALQLLTQLT
                     PDIITMDVHMPGMNGYEATERILELHGLPVVILSASVDHQASATAMRALEAGALAVLE
                     KPSAPTSDDFPDRIEELLRTLRTMSQVRIGRRKRRTETTGLANAPTLVEQAAARSPQL
                     VAIAASAGGPMAVKALLQALAPQPWPVVLVQHIAPGFLPSFPDWLASLTPMQVRIAEH
                     GQSLVPDVLYLAPDGQHLGFAANRSVLLDDGPPEEHVRPAANHLFRSVARHFGRRAIA
                     VQMSGMGRDGVQGLTELHRVGGLTLVQEPSTAVIDSMPKAAIAQGVANWVLPPEGIAE
                     TLNEIAAQMVAVNGIQGR"
     gene            complement(2625..4823)
                     /locus_tag="VLF16_13530"
     CDS             complement(2625..4823)
                     /locus_tag="VLF16_13530"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX71944.1"
                     /translation="MPLDRDALRQRLLASFRAEAAERLATLADVLANWREGGASQDDI
                     ESLFREVHSIKGASRAAGVGQIEQLCHAWESLLSAVRHGDLPLDGERVELCRLTLKVV
                     QRLHAEQAVDDHELAQLIDGLNDSAQGRVVALPEMAAGAPETPRDPATVRVTTQRLDA
                     LLFHSEVLLQHKLEAQAHARVLKEHAAAFEPQRVKRTLGAGVLRQLRDNIERVPAELR
                     EALGDALDHLDWSMAQFDRLHFAASRLAREGDLLAVGLTRLSESLVAEVQEALLLSGA
                     SLFEGVPAMVQDIASQAGKRVELEVSGASLQIDKRILDELRNVLTHLLRNAIDHGLET
                     PEQRGLHGKRAVGRLQVELIQEAADRFELRVGDDGQGIDIGRLKAKAVAAGRLTAEQA
                     EAMGTREAQALIFVSGLSTSAMLTDISGRGLGMAIIQDTVERLGGRIEIDSAMGQGTC
                     FHLHLPLSLSTFRAVIVRNAERVFAVPALAVERCLRLPASAIRTLENRPSVSFEGRVL
                     PRWPLGDVLGLAQPPLGEGDLTLLLLRVRGERFVLLVEELLGDQEIIVKSLGKQLVRV
                     RNLMGATLLGDGRLVPILHPADLYRSALASEASSLSQQARPRDPAVARRLLVAEDSFT
                     SRGLLKAILEAAGYRVVTANDGLEAWNALKQSHFDLLVSDVEMPRLDGFTLTSRIRAD
                     RELAELPVVLVTALHSAEDRARGLEAGANAYLAKGGFEQDNLLEAIRRLL"
     gene            complement(4893..>5270)
                     /locus_tag="VLF16_13535"
     CDS             complement(4893..>5270)
                     /locus_tag="VLF16_13535"
                     /inference="COORDINATES: protein motif:HMM:NF013731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HSX71945.1"
                     /translation="HVAAALPLPQFTPLPGTPPFVLGIVGVRGHIVSVLDLRVFFQLP
                     IEGLSDKNYLVVLRSADMEFGLLADRIRGIEQLRRDSLQSELANLTGIRARYLLGVTP
                     DQKTVLDGARLLGDPDLLVRDEE"
BASE COUNT          790 a         1810 c         1812 g          858 t
ORIGIN      
        1 ggcgtagacg atgggatggt ccggctgctc ggcgtcggtg atgatcaccg cgttgacgct
       61 ggcctccacg gcgcgggtgc gcgtgcggat ttccaggtcg cggcggcgct gctcggtgat
      121 gtcctggatc accacgatgg cgccctggat cacctggttg gcatcgagaa acggcaccgc
      181 ggaattgagg atggtcttgc gctggccctt gaaggtctcg atgtcgatca cttcgttgcg
      241 cgagatcttg ccttccctga ccgcccgcat catcgaccag tcgctctcgg tgatgcgctc
      301 gccggtctcc gcccaccagc cgcggtagtg gccgtagccc tcgttgccgc cgggatgcga
      361 gccgccccag atcaggctgc tttccgggtt gctcatgatc agccggccct gctgatcggt
      421 gacgaaaacc cccaccggca ggttgtcgag caccttgcgc agcagctgct cgctcttggt
      481 cagggcatcg gtgcgctgct ccaccagctg ctccatgctc tcgaacaggc gcacccggcc
      541 gagcgccatg gccagttgcc ggccgatcga ggccagcgcg ctgagcgact cttccgacca
      601 gggccgggca tcgcgctgca ccacgttgag catgccgatg gtttccccgc tcagctgcag
      661 cggaatgctg gcgtggatgc cttcgccggg cttgtcgctc agcgccgggc attggttgat
      721 gttgctcggc tggctcaggc ggtccctgac ccagacatgg cggcacgggc agttctgcgc
      781 gcaacgctcc aggtcggccg gcgagtagct cggcccccgc gagcacgcgc ctgccacttc
      841 ggcgggccgg gaggcatcgc cgccattgcc cagcagcagc caggcgccca cggcatcggg
      901 aaactcgaga atgcggcgca gcgccgcgtt gatcacatgg tgctcgctct tggcgtcggt
      961 caggccgctg gtgaagtgga acaggcagtt gagcagcgag ttggtgcggg tcagctcgtc
     1021 gtgcttgtgc tgcagctcct ggttcagccg cacgccctgc tcgtaggtgg agatcagcag
     1081 atcgaggatc tgctggcggc cggcggtgat gaagtgccgc tcgccctcca gcaccacctc
     1141 cacgcccatc tgcacgcgct cgtgcgagcg cagctcgagg ttgatcagga aatagcggat
     1201 gcgcgacatc aggtacttct cgtcgaaggg cttgacgatg aagttgtccg cgcccgaggc
     1261 gaggccatgc accacgtcgc gggcgtccgc cagggaggtg accaggatga tcggtatgtt
     1321 ctgggtctgt gccgaattct tgagctggcg acacagctcg tagccgtcca tttccggcat
     1381 cacgatgtcg ctgatgacga tggtcggctt gcgcaccgcg atcatctcca gcgcctcgcg
     1441 tccattgcgc gccacgcgta ccttgcagcc gacggcctcg agcatgtact gcaactcggt
     1501 ggcctgggtg ggactgtcct cgaccaccag aatttcggca tccgcgtaca tctgtctacc
     1561 tcccttggat tccattcact gcgaccatct gtgcggcgat ttcgttgagt gtttcggcga
     1621 tcccctcggg cggcagcacc caattggcaa ccccctgggc gatggcggcc ttgggcatgg
     1681 agtcgatcac cgcggtgctc ggctcctgga ccagcgtcag gccgcccacg cggtgcagct
     1741 ccgtgagccc ctgcacgcca tcgcggccca tgccggacat ctgcacggcg atcgcgcgcc
     1801 ggccgaaatg ccgtgccacc gagcggaaca ggtggttggc cgccgggcgc acgtgttcct
     1861 cgggcggccc gtcgtcgagc agcacgctgc ggttggcggc aaagccgagg tgctggccgt
     1921 ccggcgccag atagagcacg tcggggacca ggctctggcc gtgctcggcg atgcgcacct
     1981 gcatcggcgt gaggctggcc agccagtcgg ggaagctggg caagaaaccg ggggcgatgt
     2041 gctgcaccag caccaccggc cagggctgcg gtgccagcgc ctgcagcagc gccttgaccg
     2101 ccatcggccc gccggccgac gcggcaatgg ccaccagctg cggcgaacgc gccgcggcct
     2161 gctccaccaa ggtcggggca ttggcgagtc cggtggtttc ggtgcgccgc ttgcgccggc
     2221 cgatgcgcac ctgggacatg gtacgcaggg tgcgcagcag ctcctcgatg cggtcgggaa
     2281 aatcgtccga ggtcggcgcc gagggtttct ccagtacggc cagggcgccg gcctccagcg
     2341 cgcgcatggc ggtggccgag gcctggtggt cgacactggc ggagaggatc accaccggca
     2401 ggccgtgaag ctcgagaatg cgttcggtgg cctcgtagcc gttcatgccg ggcatgtgca
     2461 cgtccatggt gatgatgtcc ggcgtgagct gggtgagcag ctgcaacgcc tcgtcgccgc
     2521 cgccggcttc atgcacctcg aagccctcgc cttcgagcac ggcgcgcagc agcatgcggg
     2581 tcaccggcga gtcgtccact atcagcacac gcatcgagtc gtcctcagag cagccggcgg
     2641 atggcttcca gcaggttgtc ctgctcgaag ccgcccttgg cgagataggc gttggcgccg
     2701 gcctccagac cgcgggcgcg gtcctcggcg gagtgcagcg cggtcaccag caccaccggc
     2761 agctcggcca actcgcggtc ggcgcggatg cggctggtca gggtgaagcc gtccaggcgc
     2821 ggcatctcga catcggacac cagcaggtcg aaatggctct gtttcaatgc gttccaggcc
     2881 tcgagcccgt cgttggcggt gaccacgcgg tagccggcgg cctcgagaat ggccttgagc
     2941 aggccgcgcg aggtgaagga gtcctcggcg accagcaggc gcctggcgac cgccgggtcg
     3001 cgcgggcgcg cctgctggct gaggctcgag gcctcgctgg ccagggcgct gcgatagagg
     3061 tcggcgggat gcaggatcgg caccagccgg ccatcgccca gcaaggtggc gcccatcagg
     3121 ttgcgcaccc gtaccagttg cttgccaaga ctcttgacga tgatctcttg gtcgccgagc
     3181 agctcctcca ccagcagcac gaagcgttcg ccgcgcaccc gcagcaggag cagcgtgagg
     3241 tcgccctcgc cgagcggcgg ttgcgccagg ccgagcacgt cgcccagcgg ccagcgcggc
     3301 agcacccgcc cctcgaagct gaccgaaggg cggttctcca gggtgcggat ggcgctcgcc
     3361 ggcaggcgca gacagcgctc cacggccagt gccggcacgg cgaagacccg ctcggcgttg
     3421 cgcacgatca ccgcgcggaa ggtcgacagg ctgagcggca ggtgcaggtg aaagcaggtg
     3481 ccctgcccca ttgcgctgtc gatctcgata cgtccgccga ggcgttccac cgtgtcctgg
     3541 atgatcgcca tgcccaggcc gcggccggaa atgtcggtga gcatcgcgct ggtcgacagg
     3601 cccgagacga agatcagcgc ctgcgcctcg cgcgtgccca tggcctcggc ctgttccgca
     3661 gtcaggcgcc cggcggccac ggccttggcc ttgagccggc cgatgtcgat gccctggcca
     3721 tcatcgccga cccgcagctc gaagcggtcg gcggcctcct ggatcagctc cacctgcagt
     3781 ctgcccaccg cacgcttgcc gtgcaggccg cgctgttccg gcgtctccag gccgtggtcg
     3841 atggcgttgc gcagcaggtg ggtgagcacg ttgcgcagct cgtcgagaat gcgcttgtcg
     3901 atctgcaaac tggccccgct cacctccagt tcgacgcgct tgccggcctg gctggcgatg
     3961 tcctgaacca tggccggcac gccctcgaac aggctggcgc cagacagcag cagcgcctcc
     4021 tgcacctccg ccaccagcga ttcggacaag cgggtcaggc cgacggccag cagatcaccc
     4081 tctctggcca ggcggctggc cgcgaagtgc aggcggtcga actgggccat gctccagtcg
     4141 agatggtcga gggcatcgcc caaggcctcg cgcagctcgg cgggaacccg ctcgatgttg
     4201 tcccgcaact ggcgcagcac gccagcgccg agcgtgcgct tgacgcgctg tggctcgaac
     4261 gccgcggcat gctccttcag cacccgcgca tgggcctggg cctccagctt gtgctgcaac
     4321 agcacctcgc tgtggaacag caaggcatcc aggcgctggg tcgtcacccg caccgtggcc
     4381 gggtcccgcg gcgtctccgg cgctccggcg gccatctcgg gcaaggcgac cacgcgaccc
     4441 tgggcgctgt cgttgaggcc gtcgatcagc tgcgccagtt cgtggtcatc caccgcctgt
     4501 tcggcgtgca ggcgctgcac caccttgagc gtcagccggc acagctcgac ccgctcgccg
     4561 tccagcggca gatcgccatg ccgcaccgca ctgagcaggc tttcccaggc gtggcagagc
     4621 tgctcgatct ggcccacgcc ggcggcgcgg gaggcgccct tgatgctgtg cacctcgcga
     4681 aacagcgatt cgatgtcgtc ctggctggcg ccgccctcgc gccagttggc cagcacatcg
     4741 gccagggtgg cgaggcgctc cgccgcctcg gcgcgaaagc tggccagcag ccgttgtctg
     4801 agcgcgtcgc gatccagggg catggtgtgt tcaagctctc tcggcgggac gggcggcggc
     4861 ccgtgcggat attgggcaga tgcggcgcac gctcattcct cgtcgcgaac cagaagatcg
     4921 ggatcgccga gcaggcgcgc accgtccaat acggtcttct ggtccggcgt gacgcccagc
     4981 aggtagcggg cgcggatgcc ggtcagattg gccagctcgc tctgcaggct gtcgcgccgc
     5041 agttgctcga tgccgcggat gcggtcggcc agcaggccga attccatgtc cgcgctgcgc
     5101 agcaccacca gatagttctt gtcggacagc ccctcgatgg gcaactggaa gaacacccgc
     5161 aggtccagca ccgagacgat gtgcccacgc accccgacga tgcccagcac gaacggtggc
     5221 gtacccggca acggcgtgaa ctgaggcagc ggcagcgcgg cggccacgtg
//
LOCUS       DATIHC010000811         2181 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11577, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000811 DATIHC010000000
VERSION     DATIHC010000811.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2181
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11577"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..961)
                     /locus_tag="VLF16_13540"
     CDS             complement(<1..961)
                     /locus_tag="VLF16_13540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018606678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II poly(R)-hydroxyalkanoic acid synthase"
                     /protein_id="HSX71946.1"
                     /translation="MRDKTAPGSLPVPAHFMNAQSAMVGLRGRDLFSTLRTLAVQGLR
                     QPAHSTRHLLSFGKQLGRVLIGDTPYQPHPQDSRFADPTWHHNPFYRRTLQAYLAWQK
                     QLKAWIDESDLSPDDRTRAHFLFALLNDALAPTNTLLNPLAVKELFNSGGTSVLRGAR
                     QMLDDLLHNAGMPQQVDKRAFEVGRNLATTPGAVVFRNELFELIHYRPMSEKQYERPL
                     LVVPPQINKFYIFDLSPEKSFIQYCLKNGLQVFMISWRNPDARHREWGLSSYVQAVSD
                     ASDVCRAISGSKEVNLMGACAGGLTIAALQGHLQAKRQLRKIGC"
     gene            complement(1109..1966)
                     /gene="phaZ"
                     /locus_tag="VLF16_13545"
     CDS             complement(1109..1966)
                     /gene="phaZ"
                     /locus_tag="VLF16_13545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013713715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA];
                     GO_process: GO:0006112 - energy reserve metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="poly(3-hydroxyalkanoate) depolymerase"
                     /protein_id="HSX71947.1"
                     /translation="MPQPFVFRTIELDDQIIRTAVRPGSSSLTPLLIFNGIGANLELV
                     MPFVQALDPDLEVIAFDVPGVGGSSTPSTPYRFPGLAKLAARMLDYLDYGQVNAIGVS
                     WGGALAQQFAHDYPERCKKLVLAATSAGAVMVPGKPRVLWRMASPRRYIQPSYGVHIA
                     PDIYGGAFRRDPKLALAHASKVRSGGKMGYYWQLFAGLGWTSIHWLHRIRQPTLVLAG
                     DDDPIIPLVNMRLLAWRIPNSELHVIDDGHLFLVTRAEAVAPIIMKFLQEERQRAVMH
                     PQPMPARSH"
BASE COUNT          333 a          676 c          802 g          370 t
ORIGIN      
        1 cgcagccgat cttgcgcagc tggcgcttgg cctgcaggtg accctgcagc gcggcgatgg
       61 tcagcccgcc ggcgcaggcg cccatcaggt tcacttcctt gctgccgctg atggcgcggc
      121 agacgtcgct ggcatcgctc accgcctgca cgtagctgga cagcccccat tcgcgatggc
      181 gcgcatccgg gttgcgccag ctgatcatga acacctgcag gccgttcttc aggcagtact
      241 ggatgaagct cttctccggg ctgaggtcga agatatagaa cttgttgatc tgcggcggca
      301 ccaccagcag cgggcgctcg tactgtttct cgctcatcgg cctgtagtgg atcagctcga
      361 acagttcgtt gcggaacacc accgcgcccg gggtggtggc cagattgcgg ccgacctcga
      421 aggcgcgctt gtcgacctgc tgcggcatgc cggcgttgtg cagcaggtcg tcgagcatct
      481 gccgggcgcc gcgcagcacg ctggtgccgc cgctgttgaa cagctccttg accgccagcg
      541 ggttgagcag ggtgttggtc ggcgccaggg catcgttgag cagggcgaac aggaagtgtg
      601 cgcgggtgcg gtcgtccggc gacaggtcgc tctcgtcgat ccaggccttg agctgcttct
      661 gccaggccag ataggcctgc agcgtgcgtc ggtagaaggg gttgtggtgc caggtagggt
      721 cggcgaagcg gctgtcctgc gggtgcggct gatagggcgt gtcgccgatc agtacgcggc
      781 ccagctgctt gccgaacgac agcagatggc gcgtgctgtg cgccggctga cgcagtccct
      841 gcacggccag ggtgcgcagg gtggagaaca ggtcgcggcc gcgcaggccg accatcgcgc
      901 tctgtgcgtt catgaagtgg gcggggaccg gcagggaccc cggggctgtc ttgtcacgca
      961 tggtcaggct ccgtcgtcga gctgtcacat ccggtgacag caaggcttgt accagggcgc
     1021 gccggagggc gatccagact gccgcgcaaa caatatgtct tcaccggcgt gccccagcct
     1081 ggggcggggc atgccggatc cgtgcgaatc agtgactgcg agcgggcatt ggctgcgggt
     1141 gcatcactgc gcgctgcctc tcctcctgca ggaacttcat gatgatcggt gccaccgcct
     1201 cggcgcgggt caccaggaac aggtggccat cgtcgatcac gtggagttcc gagttgggga
     1261 tgcgccacgc cagcaggcgc atgttgacca gcgggatgat ggggtcgtcg tcgccggcca
     1321 gtaccagcgt aggctggcgg atgcgatgca gccagtggat gctggtccag ccgaggccgg
     1381 cgaacagctg ccagtaatag cccatcttgc cgccggagcg gaccttgctc gcatgcgcca
     1441 gggccagctt gggatcgcgg cggaaggcgc cgccgtagat gtccggcgcg atgtgcacgc
     1501 cgtaggacgg ctggatgtag cgccgcgggc tggccatgcg ccagagcacc ctgggcttgc
     1561 ccggcaccat caccgcgccg gccgaagtgg cggccagcac cagcttcttg cagcgctcgg
     1621 gatagtcgtg ggcgaactgc tgtgccagcg cgccgcccca ggacacgccg atggcgttga
     1681 cctggccgta gtccaggtaa tcgagcatgc gcgcggccag tttggccagg ccggggaagc
     1741 ggtagggcgt gctcggcgtg gacgagccgc cgacgccggg aacgtcgaag gcgatcactt
     1801 ccagatccgg gtcgagcgcc tggacgaagg gcatcaccag ttcgaggttg gcgccgatgc
     1861 cgttgaagat cagcagcggc gtgaggctgc tgctgcccgg gcggaccgcg gtgcggatga
     1921 tctggtcatc cagctcgatg gtgcggaaaa cgaaaggttg cggcatgcgc taggccctgt
     1981 acatgaatcg gcggcgagcg gctctcctga gcgactcgcc gaatatccgc cggggcggag
     2041 cgccaccggc tcgggccgtg tggcgtgcga cgccttccgg gcgccgcggc agtgttgcag
     2101 ggagcgccga tcagcgctcg tgtacatagg tgcccggcga ggcctcgccc ggagcatggg
     2161 ccttgttgcc gaggttggcc g
//
LOCUS       DATIHC010000812         2567 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_26890, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000812 DATIHC010000000
VERSION     DATIHC010000812.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2567
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26890"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(9..605)
                     /locus_tag="VLF16_13550"
     CDS             complement(9..605)
                     /locus_tag="VLF16_13550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017642669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HSX71948.1"
                     /translation="MSLATLLFTDYRRRVLGLLLLHPERSYHLREIARLTATQPGTLA
                     RELNKLAEAGVLTKRKVGNQLQYGADRQCPIYEELASILRKTSGLGDVLADALLAVRD
                     QVAVAFVFGSTASGKASADSDIDLLLIGELGFADAVAALYPAQGALGREINPKLYRPE
                     EWRLALRERGSFMRDVRAKPKLFVIGGAAELQRLEEQP"
     gene            complement(671..>2567)
                     /locus_tag="VLF16_13555"
     CDS             complement(671..>2567)
                     /locus_tag="VLF16_13555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015275225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HSX71949.1"
                     /translation="LRQAGVRWGRDGDHRAALDLPADDAFTWRQGLDRLLLGFAAPPQ
                     LAGDGLPLLGDSWPLDALEGARAQLLGRLCAFVEQLAGLAERLQRARPLADWALDLQG
                     LIDALFDERESGDTLLLLSQACAALGRQATDAGIVRPVELALVRQQLGAALESGSGAS
                     GFLTGAVTFCTMVPMRSLPFRLVCLLGLDDGALPRRTPAAGFDLIARRPRRGDRARRL
                     DDRYLFLETLLSARDGLYLSYVGRDPRDNAELPPSVLVSELLETVDLTATQGATKASA
                     GITVEHPLQPFAPGNFAAHGPRRGFASAWFRAAQRLAEAPTLELPPFIERLPEPDEDW
                     FTIEPSQLLLCFRHPARFLLEQRLGLRLAGAEEGIAADEPFSLERSAYQGLRQLALQA
                     VERGWSEEQERRVARAAGWLPPGELGHALWGKQRGPVRAFAPRLFEARPEESPEPLLV
                     DIQLAGVRVHGWLDGVTSSGLFDWRLRAPDARDLPGFWLRHLLLNVAATPDIARESLL
                     VSPAGDWQLGPLNDARTLLEPWLAAYREAQCEPLAFISRSSYEFAKALVTPSAKSRKQ
                     PLDAARDKARAAWLGAEFSPLAGEALDPWYALAFRERDPLDARFELLAENLLGPALKA
                     LAADEED"
BASE COUNT          385 a          891 c          958 g          333 t
ORIGIN      
        1 gtccagggtc atggctgctc ctcgagccgc tgcagctcgg cagcgccacc gatgacgaag
       61 agcttcggct tggcccgcac gtcgcgcatg aagctgcccc gctcgcgcag cgccaggcgc
      121 cattcctcgg gccggtacag cttgggattg atctcccggc ccagcgcccc ctgggccgga
      181 tacagcgccg ccaccgcgtc ggcgaagccg agttcgccga tcagcagcag gtcgatatcg
      241 ctgtcggcac tcgccttgcc gctggccgtg gagccgaaca cgaaggccac cgcaacctgg
      301 tcgcgcacgg ccagcagggc atccgccaac acatcgccga ggccgctggt cttgcgcagg
      361 atactggcga gttcctcgta tatcgggcat tggcggtcgg cgccgtactg cagctggttg
      421 ccgaccttgc gcttggtcag cacgccggct tccgccagct tgttcagctc gcgcgccagc
      481 gtcccgggct gggtcgcggt cagccgggcg atctcgcgca agtggtagct gcgctcgggg
      541 tgcagcaaca gcaggccgag gacgcgacgg cgatagtcgg tgaacagcag cgtcgccagg
      601 ctcatgattc ttcctgttgc tttgaaagca acgtttgtag cctaaaaggc gacaacagtg
      661 aagccatctc tcaatcttcc tcgtccgcgg ccagggcctt gagcgccggg ccaagcaggt
      721 tctcggcgag cagttcgaag cgagcgtcga gcgggtcgcg ctcgcggaag gccagggcgt
      781 accaggggtc gagggcttcc ccggccagcg ggctgaactc ggcgccgagc caggcggccc
      841 gggccttgtc gcgggccgcg tcgagcggct gcttgcggct cttggcgctg ggcgtcacca
      901 gcgccttggc gaactcgtag ctgctgcggc tgatgaatgc cagcggctcg cactgtgcct
      961 cgcggtaggc ggccagccaa ggctccagca gcgtgcgggc atcgttcaac gggccgagct
     1021 gccagtcgcc ggcgggcgac accagcaggc tctcgcgggc gatatccggc gtggcggcga
     1081 cgttgagcag caggtggcgc agccagaagc cgggcaggtc gcgggcgtcc ggcgcgcgca
     1141 ggcgccagtc gaacaggccg ctggaggtca cgccgtcgag ccagccgtgc acgcgcacgc
     1201 cggccagctg gatatccacc agcagcggct cggggctctc ctcggggcgc gcctcgaaca
     1261 ggcgcggggc gaaggcgcgc accgggccac gctgcttgcc ccacaacgca tggcccagtt
     1321 cgccgggcgg cagccagccg gcggcgcggg ccacgcggcg ttcctgttcc tcgctccagc
     1381 cgcgttccac ggcctgcaac gccagctggc gcaggccctg gtaggccgag cgctccaggc
     1441 tgaagggctc atcggcggcg atgccctcct cggcgccggc caggcgcagg cccaggcgct
     1501 gttccagaag gaagcgcgcc gggtggcgga agcacagcag cagctggctg ggctcgatcg
     1561 tgaaccagtc ctcgtccggc tcgggcaggc gctcgatgaa aggaggcaac tccagcgtcg
     1621 gtgcctcggc cagacgctgg gcggcacgga accaggcgga agcgaagccg cgacgcgggc
     1681 cgtgggcggc gaagttgccg ggggcgaagg gctgcagcgg atgctcaacg gtgatgccgg
     1741 cgctggcctt ggtcgcaccc tgggtcgcgg tcagatcgac cgtctccagc agctcgctga
     1801 ccagcaccga gggcggcagc tcggcgttgt cgcgcgggtc gcggccgaca tagctgaggt
     1861 acaaaccgtc cctagcgctg agcagggttt ccaggaacag gtagcggtcg tccaggcgcc
     1921 gggcgcggtc gccgcggcgc gggcgccggg cgatcaggtc gaaaccggcg gccggggtgc
     1981 gccgcggcag ggcgccgtcg tccaggccga gcaggcagac caggcggaac ggcaggctgc
     2041 gcatcggcac catggtgcag aaggtcaccg cgccggtgag aaagcccgag gcgccgctgc
     2101 cgctctccag cgccgcgccg agctgctggc gcaccagcgc cagttccacc gggcgcacga
     2161 tgccggcatc ggtggcctgg cgacccaggg ccgcgcaggc ctggctgagc aggagcaggg
     2221 tgtcgccgga ttcgcgctca tcgaacagcg cgtcgatcag gccctgcagg tccagcgccc
     2281 agtcggccag cggacgggcg cgctgcaggc gttcggccag gccggcgagc tgctcgacga
     2341 aggcgcacag gcggccgagc aactgggcgc gggcgccctc cagcgcgtcc agcggccagc
     2401 tgtcgcccag cagcggcaga ccgtcaccgg ccagctgagg cggcgcggcg aagcccagca
     2461 acaggcggtc caggccctgg cgccaggtga aggcatcgtc ggcgggcaag tcgagggcgg
     2521 cgcgatggtc gccgtcacgg ccccagcgca cgccggcctg gcgcagc
//
LOCUS       DATIHC010000813         6396 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34912, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000813 DATIHC010000000
VERSION     DATIHC010000813.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6396
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34912"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..244
                     /locus_tag="VLF16_13560"
     CDS             <1..244
                     /locus_tag="VLF16_13560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010214066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71950.1"
                     /translation="GGGIGAAGGQVIGSRVGGSTGGAIGAAAGGGAGGALGNAYGDDD
                     DDHDGRRYRDGRYYDHDGHPGRALGHKKHKWHKKHR"
     gene            complement(306..1652)
                     /locus_tag="VLF16_13565"
     CDS             complement(306..1652)
                     /locus_tag="VLF16_13565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017675849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1329 domain-containing protein"
                     /protein_id="HSX71951.1"
                     /translation="MLRTIAVLSLAAAVSLPAHARVDAAQAARLGEDLMPLGGERAGN
                     AAGTIPPWEGGVATPPANYQPGMHHPDPFAADTELYRVDKGNMGQYKALLTPAYQKLL
                     ERNPEYFLRVFPTRRSAASPQRIYDATRYNATNASLIAGGNGIEGTAAGIPFPIPQNG
                     QEAIWNHITRYRGEQTRMVTNHAAVLEGGDYVLVKRERDIMFIYGREGMTPADLDNTL
                     FFYKYVVTAPSKLAGSALVVQETLDQVLAIRKAWRFNRGERRVRRLPMLAYEAMQPDT
                     NGMATADVVDAYNGAPDRYEWTLVGKQEMLVPYNSYAVHQEGIPYDKILQEKHVNPEL
                     LRHELHRVWVVDAKLRKGHSHPYAERRFYLDEDSWQILAVDLYDRNGELVGLQEAHPI
                     SYYDVPMFLSTLETIYDFKGNRYFVDGLDNNEPMYDFNVQLKKSDFTAAALRREGI"
     gene            complement(1802..2473)
                     /gene="trmB"
                     /locus_tag="VLF16_13570"
     CDS             complement(1802..2473)
                     /gene="trmB"
                     /locus_tag="VLF16_13570"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HSX71952.1"
                     /translation="MRTIKSFVMRAGRMTEGQQRGLDQGWPKFGLELADGPRDFDQVF
                     GRSAPRTFEIGFGMGHATLEMAAAAPEQDFIGVEVHRPGVGALLNGMLTQNLSNIRVY
                     SCDALEVLRDCVADASLDRVLLFFPDPWHKARHHKRRIVQPAFAELVRRKLKVGGVLH
                     MATDWQAYAEHMLEVMSLAPGYHNLAGDADYVERPSERPVTKFEKRGERLGHGVWDLK
                     FQRCE"
     gene            complement(2532..3323)
                     /locus_tag="VLF16_13575"
     CDS             complement(2532..3323)
                     /locus_tag="VLF16_13575"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990107 - thiazole synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HSX71953.1"
                     /translation="MSTITDKPFTLAGRTYESRLLVGTGKYKDLEETRLAIEASGAEI
                     VTVAVRRTNIGQNPGEPNLLDVISPDKYTILPNTAGCYDAAEAVRTCRLARELLDGHK
                     LVKLEVLADQKTLFPNVIETLKAAEVLVKEGFDVMVYTSDDPIIARQLAEMGCIAVMP
                     LAGLIGTGLGICNPYNLRIILEEATVPVLVDAGVGTASDATIAMELGCEAVLMNSAIA
                     HAQDPILMGAAMKHAIIAGRMAYLAGRMPKKLYASASSPLDGLIK"
     gene            complement(3344..3544)
                     /gene="thiS"
                     /locus_tag="VLF16_13580"
     CDS             complement(3344..3544)
                     /gene="thiS"
                     /locus_tag="VLF16_13580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003379876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HSX71954.1"
                     /translation="MHIQLNGQPFELPDGATVADLLVRLDAAGKRVAVELNLDIVPRS
                     QHGATVLHEGDRLEVVHAIGGG"
     gene            complement(3637..4014)
                     /locus_tag="VLF16_13585"
     CDS             complement(3637..4014)
                     /locus_tag="VLF16_13585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HSX71955.1"
                     /translation="MLRVFLLLAALAGFSGVALGAFAAHGLKGQLSAEYLAVFQTGVH
                     YQLVHALALFGVALLAERLPGRLLKAAGTLFAVGILLFSGSLYALTLSGLGKLGMITP
                     LGGVCFLAGWLCLALAALRSGRA"
     gene            4080..4823
                     /gene="mtgA"
                     /locus_tag="VLF16_13590"
     CDS             4080..4823
                     /gene="mtgA"
                     /locus_tag="VLF16_13590"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011914991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009274 - peptidoglycan-based cell wall
                     [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HSX71956.1"
                     /translation="MLRNLLRRLTKLLLWFVAVSALLVFALRWIDPPGTALMIERKVQ
                     SWIDDEPIDLQRTWRPWSELPDDLKIAVIAAEDQKFAEHWGFDVAAIRQALEHNAEGG
                     SLRGASTISQQVAKNLFLWSGRSWPRKALEAWFTGLIELFWSKQRILEVYLNSVEWSD
                     GVFGAEAAARHHFNVGAPYLSRQQACLLAAVLPNPRAWSASRPGPHVQRRANWIRRQS
                     YQLGGSHYLNQLSTPQPLAQWWPEWLPKP"
     gene            complement(4759..5445)
                     /locus_tag="VLF16_13595"
     CDS             complement(4759..5445)
                     /locus_tag="VLF16_13595"
                     /inference="COORDINATES: protein motif:HMM:NF019559.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysoplasmalogenase"
                     /protein_id="HSX71957.1"
                     /translation="MSAPQRRCYLLALGLGLLYLTLLPLKPYPLGWLLKPLPMLLFAL
                     LVWRAFPAATGRWLALGFAAAAAGDFFLDVGDRDGLFMQALLAFLVNQIAFAVAFFRL
                     GRGRPWLNWRAMPVAIYTVAMATWMLPAAGALQVPVAVYLSCLLSMVLLAGRLETSPG
                     PLWLGAALFMLADSLIGVNKFVQPFPHAVPVIVSCYFTGQALIAWGLIRVSAATPATT
                     GPGAAASTAG"
     gene            complement(5539..6141)
                     /locus_tag="VLF16_13600"
     CDS             complement(5539..6141)
                     /locus_tag="VLF16_13600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71958.1"
                     /translation="MTRRPPALLFTIVAVASCLLGYWLLTPREKEAAPMPWLGAWQVE
                     VLQPLAEERLNLGQLAARLPTAELWLQPRLDGPRLLLRDQPSLGEGTWQLEAELALSE
                     SQRDSLARASGAKPGGAEQPQSKAMLEQLAERPIAALNLRPRQATAAASLSASLGEPR
                     LRLQMPKGEAWVYPQLGLTVHLQDGNLQLLRVVPRRLLNE"
     gene            complement(6201..>6396)
                     /locus_tag="VLF16_13605"
     CDS             complement(6201..>6396)
                     /locus_tag="VLF16_13605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma factor-like helix-turn-helix DNA-binding
                     protein"
                     /protein_id="HSX71959.1"
                     /translation="SSNASLHEALESLDERSRDILHQRWLAEEKATLHDLAAKYNVSA
                     ERIRQLEKNAMNKLKGSIQA"
BASE COUNT         1019 a         2126 c         2216 g         1035 t
ORIGIN      
        1 cggcggtggc atcggcgccg ccggcggcca ggtgatcggc agccgcgtcg gcggcagcac
       61 cggcggcgcg atcggcgcgg cggctggtgg cggtgccggc ggcgcgctgg gcaatgccta
      121 cggcgatgat gacgacgatc acgacgggcg ccgctaccgt gacggccgct attacgacca
      181 cgacgggcat cccggccggg ccctcggcca caagaagcac aagtggcaca agaagcaccg
      241 ctgagaaacg acaaggcccg cacaaagcgg gccttgtcgt ttgcggagcc tgtagccttg
      301 cggcgtcaga tgccttcgcg gcgcagggcc gcggcggtga agtcgctctt cttcagctgc
      361 acgttgaaat cgtacatcgg ctcgttgttg tcgaggccgt cgacgaaata gcggttgccc
      421 ttgaagtcgt agatggtctc cagggtgctg aggaacatcg gcacgtcgta gtagctgatc
      481 gggtgcgcct cctgcaggcc caccagttcg ccgttcctgt catacaggtc gacggcgagg
      541 atctgccagc tgtcctcgtc cagatagaag cggcgctcgg cgtacggatg gctgtggccc
      601 ttgcgcagct tggcgtcgac gacccacacg cggtgcagct cgtggcgcag cagctcgggg
      661 ttgacgtgct tctcctgcag gatcttgtcg tagggaatgc cttcctggtg taccgcgtag
      721 ctgttgtacg gcaccagcat ttcctgcttg ccgaccaggg tccactcgta gcgatccggc
      781 gcgccgttgt aggcgtccac cacgtcggcg gtggccatgc cgttggtgtc cggctgcatg
      841 gcctcatagg ccagcatcgg caaacgacgc acgcggcgct cgccgcggtt gaagcgccag
      901 gccttgcgga tcgccagcac ctggtcgagg gtctcctgca ccaccagggc ggaaccggcc
      961 agcttgctcg gcgcggtcac cacgtacttg tagaagaaca gggtgttgtc caggtccgcc
     1021 ggggtcatgc cctcgcggcc gtagatgaac atgatgtcgc gctcgcgctt gaccagcacg
     1081 tagtcgccac cctcgagcac ggcggcatgg ttggtgacca tgcgggtctg ctcgccacgg
     1141 tagcgggtga tgtggttcca gatcgcttcc tgaccgttct gcgggatcgg gaagggaatg
     1201 ccggccgcgg tgccctcgat gccgttgccg ccggcgatca ggctggcgtt ggtggcgttg
     1261 tagcgggtgg cgtcgtagat acgctgcggc gaggcggcgc tgcggcgggt ggggaacacg
     1321 cgcaggaagt attccgggtt ccgctccagc agcttctggt aggccggagt cagcagggct
     1381 ttgtactggc ccatgttgcc cttgtcgacg cgatacagct cggtatcggc ggcgaagggg
     1441 tctggatggt gcatgcccgg ctgatagttg gccggcggcg tggccacgcc tccctcccag
     1501 ggcggaatgg tgccggcggc gttgccggcg cgctccccgc ccagcggcat cagatcttct
     1561 ccgaggcggg cggcctgggc cgcatccacg cgggcgtgcg cgggcaggct gacagcggcg
     1621 gccagcgaca ggactgcaat agttctcagc acagcgttct cctcgcgacg cgatagcgcg
     1681 tcgctgctct tatctacgac cagtgtaggt cgcgcttgca gattgccatt gggtgaggtg
     1741 gccatcctgg caccgggtgg tcccggttta tcgatcccgc atccggcggg actctgaatg
     1801 cttactcgca gcgctggaac ttgaggtccc agacgccgtg gccgaggcgc tcgccgcgct
     1861 tctcgaactt ggtgaccggg cgctcgctcg ggcgctccac gtagtcggcg tctccagcca
     1921 ggttatggta gcccggtgcc agcgacatga cttccaacat atgttccgcg tatgcctgcc
     1981 aatcggtggc catgtgcaac acgccgccga ccttgagctt gcgccgcacc agttcggcga
     2041 aggccggttg gacgatgcgc cgcttgtggt ggcgggcctt gtgccagggg tcggggaaga
     2101 acagcaggac gcggtcgagg ctggcgtcgg ccacgcaatc gcgcagcact tccaaggcgt
     2161 cgcagctgta cacgcggatg ttcgacaggt tctgcgtgag catgccgttg agcagggcgc
     2221 cgacgccggg gcggtgtact tccacgccga tgaagtcctg ctccggcgcg gccgcggcca
     2281 tctccagggt ggcgtggccc atgccgaagc cgatctcgaa ggtgcgcggc gcgctgcggc
     2341 cgaacacctg gtcgaagtcg cgcgggccgt cggccagttc caggccgaac ttcggccagc
     2401 cttgatccag gccacgttgc tggccctcgg tcatacgccc ggcgcgcatg acgaagctct
     2461 tgatggtgcg caggggccgc tcggccgcgc catcgccggc ctgctgaatg tcgtcgctca
     2521 tgaaaggtct cttacttgat caggccgtcc agcggcgacg atgcgctcgc atagagtttc
     2581 ttcggcatgc gcccggccag gtaggccatg cgcccggcaa tgatcgcgtg cttcatcgcc
     2641 gcgcccatca ggatcgggtc ctgggcgtgg gcgatggcgc tgttcatcag caccgcctcg
     2701 cagcccaact ccatggcgat ggtggcgtcg gaggcggtgc ccacgccggc atcgaccagc
     2761 accggcacgg tggcttcttc gaggatgatg cgcaggttgt aggggttgca gatgcccagc
     2821 ccggtaccga tcaggccggc cagcggcatc accgcgatgc agcccatctc ggccagctgg
     2881 cgcgcgatga tggggtcgtc gctggtgtac accatcacgt cgaagccttc cttgaccagc
     2941 acttcggcgg ccttgagggt ctcgatcacg ttggggaaca gagtcttctg gtcggccagc
     3001 acttccagct tgaccagctt gtggccgtcg agcagctcgc gggccaggcg gcaggtgcgc
     3061 accgcttcgg cggcgtcgta gcagccggcg gtgttgggca ggatggtgta cttgtccggc
     3121 gagatcacat ccagcagatt gggctcaccc gggttctgcc cgatgttggt ccggcgcacg
     3181 gcgacggtga cgatttccgc gccgctggcc tcgatggcca ggcgggtttc ctcgaggtcc
     3241 ttgtacttgc cggtgccgac cagcaggcgc gactcgtagg tgcggccggc cagggtgaag
     3301 ggcttgtcgg tgatcgtgct catggctact ccttgaggtc gatctagccg ccgccgatgg
     3361 cgtgaacgac ttccagccgg tcgccctcgt gcagcacggt ggcgccgtgc tgactgcgcg
     3421 ggacgatgtc cagattgagc tcgaccgcca cccgtttgcc ggcggcgtcg aggcgcacca
     3481 gcaggtcggc gaccgtggcg ccgtccggca gctcgaaggg ttggccgttc aactggatgt
     3541 gcatggctgg gcggtcagat catgaaaggg tcggcattct agcccgatcg accggatcga
     3601 ccaaggcacg cgcgtccgat accggcccgc gacgattcag gcgcgcccgg agcgcagcgc
     3661 cgccagcgcc aggcacagcc agccggcgag gaagcacacg ccccccagcg gcgtgatcat
     3721 gcccagcttg cccaggccgc tcagggtcag cgcatagagg ctgccggaga acagcaggat
     3781 gcccaccgca aacagcgtgc cggccgcctt gagcaaccgc cccggcaggc gctcggcgag
     3841 caacgccacg ccaaacaggg ccagggcatg caccagctgg tagtgcacgc cggtctggaa
     3901 caccgccagg tattccgcgc tcagctgccc cttgagaccg tgggcggcga aggcgcccag
     3961 cgccacgccg gagaagccgg ccagggccgc cagcagcaga aagactcgta acatgatggg
     4021 ttccccgaca gattcgatgc ggccgctata atggccgctc cctcagaccg ggccaagcca
     4081 tgctgcgcaa cctgctccgt cgcctgacca aattgctgct ctggttcgtc gccgtcagcg
     4141 ccctgctggt attcgccttg cgctggatcg atccacccgg cacggcgctg atgatcgagc
     4201 gcaaggtgca gtcctggatc gatgacgagc cgatcgacct gcagaggacc tggcgcccct
     4261 ggagcgagct gcccgacgac ctgaagatcg cggtgatcgc cgccgaggat cagaagttcg
     4321 ccgagcactg gggcttcgat gtcgccgcca tccgccaggc cctggagcac aacgccgagg
     4381 gcggcagcct gcgcggcgcc agcaccatca gccagcaggt ggcgaagaac ctgttcctct
     4441 ggtccggccg cagctggccg cgcaaggcgc tcgaggcctg gttcaccggg ctgatcgagc
     4501 tgttctggtc gaagcagcgc atcctcgagg tttacctcaa cagcgtcgaa tggagcgacg
     4561 gcgtgttcgg cgccgaggcg gccgcgcgcc accacttcaa tgtcggcgcg ccgtacctgt
     4621 cgcgccagca ggcctgcctg ctcgccgccg tgctgcccaa cccgcgcgcc tggagcgcca
     4681 gccgcccggg cccgcatgtg cagcgccggg ccaactggat ccgccggcag agctatcagc
     4741 tcggcggcag ccactacctc aaccagctgt cgacgccgca gcccctggcc cagtggtggc
     4801 cggagtggct gccgaaaccc tgatcaggcc ccaggcgatc agcgcctggc cggtaaagta
     4861 gcagctgacg atcaccggta ccgcatgggg aaagggctgg acgaacttgt tcacgccgat
     4921 cagcgaatcc gccagcatga acagcgcggc gcccagccac agcggcccgg ggctcgtctc
     4981 caggcgcccg gcgagcagca ccatgctcag cagacagctg agataaaccg ccaccggcac
     5041 ctgcagcgcg cctgcggccg gcagcatcca ggtggccatt gccacggtat aaattgccac
     5101 cggcattgca cgccagttca gccagggccg accgcggccg agcctgaaga aggccacggc
     5161 aaaggcgatc tgattgacca ggaacgcgag cagcgcctgc atgaacaggc cgtcgcgatc
     5221 gccaacgtcg aggaagaagt cgcccgcggc cgccgcggca aatcccagcg ccagccagcg
     5281 ccccgtcgca gcgggaaagg cgcgccagac cagcagggcg aacagcagca tgggcagcgg
     5341 cttgagcagc cagcccagcg gatagggctt gagcggcagt agcgtcagat agagcaggcc
     5401 gaggcccagg gcgagcaggt agcagcggcg ttgcggggcg gacatggggc gactcccggt
     5461 cgagacggat gtccgatcct gccggccaat cgctccgcta cgccacgccg ggcgcgccag
     5521 caccgctggc cgcgggcgtc actcgttgag cagtcgccgc ggcaccacgc gcagcagctg
     5581 cagattcccg tcctgcaggt gaacggtgag gcccagctgc ggatagaccc aggcctcgcc
     5641 cttgggcatt tgcaggcgca accgcggctc gccgaggctg gcgctgagac tggcggccgc
     5701 cgtggcctgg cgcggacgca ggttgagcgc ggcgattgga cgttcggcca gttgctcgag
     5761 catggccttc gattgcggct gctccgcacc gccgggcttg gcgccgctgg cccgcgccag
     5821 gctgtcgcgc tgcgactcgc tgagcgccag ctcggcctcc agctgccagg taccttcgcc
     5881 cagggagggc tggtcccgca gtaacaggcg cgggccatcc aggcgcggct gcaaccacag
     5941 ctcggccgtc ggcaaacgcg cagcgagctg ccccaggttc agccgttcct cggccagcgg
     6001 ctgcagcacc tcgacctgcc aggcgccgag ccagggcatc ggcgcggcct ccttctcgcg
     6061 gggcgtcagc agccagtaac ccagcagaca actggccacg gccacgatgg tgaacagcag
     6121 ggcgggtgga cgacgagtca cggcgatcct ccggacagaa aaaagccgca cctgggtgcg
     6181 gcttctcggg tggctgacgc ttacgcctgg atcgagcctt tcagcttgtt catggcgttc
     6241 ttctccagct ggcgaatgcg ctcggcggag acgttgtact tggcggccag gtcatgcagg
     6301 gtcgccttct cctcggccag ccagcgctgg tgaaggatgt cgcggctgcg ctcgtccagg
     6361 ctctccagcg cctcgtgcag gctggcgttg gagctg
//
LOCUS       DATIHC010000814         2362 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_44284, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000814 DATIHC010000000
VERSION     DATIHC010000814.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2362)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2362)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2362
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44284"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1340
                     /locus_tag="VLF16_13610"
     CDS             <1..1340
                     /locus_tag="VLF16_13610"
                     /EC_number="1.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019472117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HSX71960.1"
                     /translation="SIYGRGLINRSVIDILKAHRFARHRLEGETELSVHDTFPILKTM
                     SELKLGAASVDLGKMVAKFKTDANGRSIEQFTKDELADVVGKQNGAAREGTDVVLYGF
                     GRIGRLLARILIEKTGGGDGLRLRAIVVRKGAENDLVKRASLLRRDSVHGKFDGTITI
                     DEANNVLIANGNMIQVIYSNDPASIDYTQYGIKNALLVDNTGKWRDAEGLGQHLKCPG
                     VDRVVLTAPGKGALKNIVHGINHGEITADDKIISAASCTTNAIVPVLKAVNDQYGIVN
                     GHVETVHSYTNDQNLIDNFHKGSRRGRSAALNMVITETGAATAAAKALPVLKGKLTGN
                     AIRVPTPNVSMAILNLNLEKATTREEINEYLRQMAMHSDLQKQIDFVNSQEVVSTDFV
                     GSRHAGVVDAEATIANDNRVVLYVWYDNEFGYSCQVVRVMEDMAGVNPPAFPR"
     gene            complement(1388..1930)
                     /locus_tag="VLF16_13615"
     CDS             complement(1388..1930)
                     /locus_tag="VLF16_13615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016975272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016872 - intramolecular lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chalcone isomerase family protein"
                     /protein_id="HSX71961.1"
                     /translation="MLRSLAALLLTLALPVLADERLSLADFPASHQQLERKNQAVLTY
                     LWADVYAAAYYTAPGIEPLQAYRREADQRLELYYYRSIDRSDVIEAAWTTLERQLDGA
                     ALAALRPDLDALHATFRDIRAGDRYALNYAPPTGLSLERNGETLFRSDDPALARAYLG
                     IWLAPNGLSDALREKLLAQR"
     gene            2177..>2362
                     /locus_tag="VLF16_13620"
     CDS             2177..>2362
                     /locus_tag="VLF16_13620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251689.1"
                     /note="uses the energy from reduction of ubiquinone-1 to
                     ubiquinol to move Na(+) ions from the cytoplasm to the
                     periplasm; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit A"
                     /protein_id="HSX71962.1"
                     /translation="MIKIKQGLDLPISGAPQQRIDAARAVRSVAVLGCDYHGMKPTMT
                     VQVGDRVALGQVLFSDKK"
BASE COUNT          440 a          771 c          746 g          405 t
ORIGIN      
        1 cctcgatcta cggccgtggc ctgatcaacc gctcggtaat cgacatcctc aaggctcacc
       61 gcttcgcccg ccaccgtctg gaaggcgaga ccgagctgtc cgtgcatgac accttcccca
      121 tcctcaagac catgagcgag ctcaagctgg gcgccgcctc cgtggacctg ggtaagatgg
      181 tcgccaagtt caagaccgac gccaacggcc gcagcatcga gcagttcacc aaggacgagc
      241 tggccgacgt ggtcggcaag cagaacggcg ctgcccgcga aggcaccgac gtggttctgt
      301 acggcttcgg ccgcatcggc cgcctgctgg cccgcatcct gatcgagaag accggtggtg
      361 gcgacggcct gcgtctgcgt gccatcgtcg tgcgcaaggg cgccgagaac gacctggtca
      421 agcgtgccag cctgctgcgc cgcgactccg tacacggcaa gttcgacggc accatcacca
      481 tcgacgaagc caacaacgtc ctgatcgcca acggcaacat gatccaggtg atctactcta
      541 acgacccggc gtcgatcgac tacacccagt acggcatcaa gaacgccctg ctggtcgaca
      601 acaccggcaa atggcgcgac gccgagggtc tgggccagca cctgaagtgc ccgggtgtcg
      661 atcgcgtcgt tctgaccgcg ccgggcaagg gcgcgctgaa gaacatcgtg catggcatca
      721 accatggcga gatcaccgcc gacgacaaga tcatctccgc cgcttcctgc accaccaacg
      781 ccatcgtgcc ggtgctgaag gccgtgaatg accagtacgg catcgtcaac ggccacgtcg
      841 agaccgttca ctcgtacacc aacgaccaga acctgatcga caacttccac aagggcagcc
      901 gtcgtggccg cagcgccgcg ctgaacatgg tgatcaccga gaccggtgcc gccaccgccg
      961 ccgccaaggc cctgccggtg ctgaagggca agctgaccgg caacgccatc cgcgtaccga
     1021 cgccgaacgt ctccatggcc atcctcaacc tgaacctgga gaaggccacc acccgcgaag
     1081 agatcaacga gtacctgcgc cagatggcca tgcactcgga tctgcagaag cagatcgact
     1141 tcgtcaactc gcaggaagtg gtgtccaccg acttcgtcgg ctcgcgccat gccggtgtgg
     1201 tcgatgccga agccaccatc gccaacgaca accgcgtcgt gctgtacgtg tggtacgaca
     1261 acgagttcgg ctacagctgc caggtggtcc gcgtgatgga agacatggcc ggggtcaacc
     1321 cgccggcctt cccgcgctaa gcgccgggtg tgaacgaaaa cgggagcttc ggctcccgtt
     1381 ttgcttttca gcgctgcgcc agcagctttt cgcgaagcgc gtccgacagt ccgttgggtg
     1441 ccagccagat gcccagatag gcccgcgcca gtgcgggatc gtcgctgcga aacagggtct
     1501 cgccgttgcg ctccaggctc agcccggtgg gtggggcata gttcagcgcg tagcgatcgc
     1561 cggcgcggat gtcgcgaaag gtggcgtgca gggcgtccag gtcggggcgt agcgcggcca
     1621 gcgcggcgcc gtcgagctgg cgctccagcg tggtccatgc ggcctcgatc acgtcgctgc
     1681 ggtcgatgct gcggtagtag tagagctcca ggcgctgatc tgcctcgcgg cgataggcct
     1741 gcagcggctc gatgcccggc gccgtgtaat aggcggcggc atagacgtcc gcccagaggt
     1801 aggtgaggac cgcctggttc ttgcgctcca gttgctgatg gctggccggg aagtcggcca
     1861 ggctcaaccg ctcgtcggcc aggacgggga gggcgagggt cagcagcagg gcggcgagac
     1921 tacgcaacat gaggttctcc attgtttgtt tctctgcgct ccaaccaccc tgaccgcgcc
     1981 gtcaagaccg cctggggccg ccgtgcggtg cgactcgcga gtctgaaacg gcacccatgg
     2041 gtgggcatgt agagcatatc tccttataat tcctgatctt ttcgcgccgc ttcggttccg
     2101 gctgcggctt gcgggccggg ttcgtcgcgg tggtttcatc cttgctgcac actgatttcc
     2161 agctctggaa gcattcatga taaagatcaa acaagggctt gatctgccca tttcaggtgc
     2221 gccccagcag cgtatcgatg cggcgcgtgc cgtacgcagc gttgccgtgc tgggctgcga
     2281 ttaccatggc atgaagccga ccatgacggt acaggtcggt gaccgggtcg ctctcggtca
     2341 ggtgctgttc tccgacaaga ag
//
LOCUS       DATIHC010000815         2661 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37281, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000815 DATIHC010000000
VERSION     DATIHC010000815.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2661
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37281"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..386)
                     /locus_tag="VLF16_13625"
     CDS             complement(<1..386)
                     /locus_tag="VLF16_13625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003254760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HSX71963.1"
                     /translation="MARIRNRRKPVAEMNVVPYIDVMLVLLVIFMVTAPMLNQGVKVD
                     LPKVSSEVLPQDNDSRVLTISIKADKTYYWNMGEEVDPDQSKASETATALPELVKTVS
                     AIMSQNAGQGKKVQVFVRGDKAVDYGS"
     gene            complement(397..1068)
                     /gene="tolQ"
                     /locus_tag="VLF16_13630"
     CDS             complement(397..1068)
                     /gene="tolQ"
                     /locus_tag="VLF16_13630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019342534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolQ"
                     /protein_id="HSX71964.1"
                     /translation="MSMWSLISNASLVVQLVMLTLVAASVTSWIMIFQRSTMLRAAKK
                     SLEVFEERFWSGIDLSKLYRQAGSNPDPDCGVEQIFRAGFKEFSRLRQQPGVDPDAVM
                     DGVARAMRVAISREEEKLEQSLPFLATVGSTSPYIGLFGTVWGIMNSFRGLAQVQQAT
                     LATVAPGIAEALIATAIGLFAAIPAVIAYNRFSARGEMLIGRYYTFADEFQAILHRKV
                     HTSDE"
     gene            complement(1100..1555)
                     /gene="ybgC"
                     /locus_tag="VLF16_13635"
     CDS             complement(1100..1555)
                     /gene="ybgC"
                     /locus_tag="VLF16_13635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005790903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HSX71965.1"
                     /translation="MRAPNEAQPFAFPCRVYYEDTDAGGIVYYVNYLKFMERARTECL
                     RSLGFAQSQLADENTLFVVHSAEARYHAPARLDDELFVTAEVVELNRASLRFRQQVRR
                     ASDEALLCEGRFVVACVRADNLKPRAIPEALRAAFAAGMGLVTAGPVGE"
     gene            complement(1610..2659)
                     /gene="ruvB"
                     /locus_tag="VLF16_13640"
     CDS             complement(1610..2659)
                     /gene="ruvB"
                     /locus_tag="VLF16_13640"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003449408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HSX71966.1"
                     /translation="MIDADRLITASSRDRDEQLDRAIRPLALSDYIGQPVVREQMELF
                     IQAAKNRQEALDHTLIFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAALLT
                     NLEPGDVLFVDEIHRLSPVVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGA
                     TTRAGMLTNPLRDRFGIVQRLEFYSSEDLATIVGRSAGILGLAIEPEGAFEIARRARG
                     TPRIANRLLRRVRDFAEVRAGGQISRGIADQALNMLDVDERGFDHQDRRLLLAMIDKF
                     DGGPVGIDNLAAAIGEERGTIEDVLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNLPK
                     RLNEPPVADLFDGNE"
BASE COUNT          453 a          847 c          881 g          480 t
ORIGIN      
        1 gagccgtaat cgaccgcctt gtcgccgcgc acgaacacct ggactttctt accctgcccg
       61 gcgttctgac tcatgatcgc cgagacggtc ttcaccagct ccggcagtgc ggtggcggtc
      121 tcgctggcct tgctttggtc cgggtcgact tcctcgccca tgttccagta gtaggtcttg
      181 tcggccttga tcgagatggt cagcacgcgg gagtcgttgt cctgcggcag cacctcgctg
      241 gagaccttgg gcaggtcgac cttgacgccc tggttgagca tgggcgcggt caccatgaag
      301 atcaccagca gcaccagcat cacatcgatg taaggcacca cgttcatctc ggcgacgggc
      361 ttgcgtctgt tgcggattct ggccattggc tgagcctcac tcgtccgagg tgtggacctt
      421 gcggtgcagg atggcctgga actcgtcggc gaaggtgtag taacggccga tcagcatctc
      481 gccacgggcg gagaagcggt tgtaggcgat caccgccgga atcgcggcga acaggccgat
      541 ggcggtggcg atcagcgcct cggcgatgcc gggagccacg gtggccagcg tcgcctgctg
      601 cacctgagcc agaccgcgga aggagttcat gatgccccac acggtgccga acaggccgat
      661 ataggggctg gtagagccga cggtggcgag gaacggcagg ctctgctcga gcttctcttc
      721 ctcgcgggag atggccacgc gcatggcacg agccacgccg tccatcaccg catccgggtc
      781 gacgcccggc tgctggcgca ggcgggagaa ttccttgaag ccggcacgga agatctgctc
      841 gacgccgcaa tccgggtccg ggttgctgcc cgcctggcga tacagcttgg acaggtcgat
      901 gccggaccag aaacgctcct cgaacacctc caaggacttc ttcgccgctc gcagcatggt
      961 gctgcgctgg aagatcatga tccaggaggt gaccgatgcg gccaccaggg tcagcatgac
     1021 cagttgcacc accaggctgg cgttgctgat caggctccac atcgacatat ggtcaacggc
     1081 gttggctgtt gcttccacgc tactctccta ccggtcctgc tgtgactaga cccatgcccg
     1141 cggcgaaggc tgcgcgcagc gcttcgggga tggcacgggg tttcaaattg tcggcccgca
     1201 cacaggccac cacgaaccgc ccttcgcaga gcagtgcctc atccgatgcc cgccgtacct
     1261 gttgacgaaa gcgcaggctg gctcggttca actccaccac ctcggcggta acgaaaagtt
     1321 cgtcgtccag ccgagccggc gcgtggtagc gcgcttcggc ggaatgcacg acgaacagag
     1381 tgttctcgtc cgccagctgc gactgggcga aacccaggct gcgcaggcat tcggtacgag
     1441 cacgctccat gaacttgagg tagttgacgt agtagacgat gccgccggcg tcggtgtcct
     1501 cgtagtacac ccgacacggg aaggcgaaag gctgggcctc gtttggcgcg cgcatactct
     1561 agtgcttact cctgaccttg ccaatccggg cgaggcgctg ttttttcatc tattcgttgc
     1621 cgtcgaagag gtccgccacc ggcggctcgt tcaggcgctt gggcaggtta agcccgaagt
     1681 gcaggtaggc gtggcgagtg actaccctgc cccgcggcgt gcgcatgatg tagccctgct
     1741 ggatcaggta aggctccagc acgtcctcaa tggttccgcg ctcctcgccg atggccgcgg
     1801 ccaggttgtc gatacccacc gggccgccgt cgaacttgtc gatcatggcc agcagcagac
     1861 gccggtcctg gtggtcgaag ccacgctcgt cgacgtccag catgttcagc gcctggtcgg
     1921 cgatgccccg gctgatctgc cccccggcgc gcacctcggc gaagtcgcgc acccggcgca
     1981 gcaggcggtt ggcgatacgc ggcgtaccgc gggcgcgacg ggcgatctcg aaggcgccct
     2041 cgggctcgat ggccagaccg agaatgccgg ccgagcgacc gacgatggtg gccaggtcct
     2101 cgctggaata gaactccagg cgctggacga taccgaagcg gtcacgcagc gggttggtca
     2161 gcatgccggc gcgggtagtt gcgccaacca gggtgaacgg tggcaggtcg agcttgatcg
     2221 aacgcgcggc cgggccctcg ccgatcatga tgtcgagctg gaagtcctcc atggccgggt
     2281 agagcacctc ctccaccacc ggcgagaggc gatggatctc gtcgacgaac aggacatcgc
     2341 ccggttccag attggtcagc aacgccgcca ggtcaccggg gcgctccagc accgggccgg
     2401 aagtgctctt gatcgacacg cccatctcct gggcgatgat attggccagg gtggttttgc
     2461 ccaggccggg cgggccgaag atcagcgtgt gatcgagggc ttcctggcgg ttcttggcgg
     2521 cctgaatgaa cagttccatc tgctcgcgca ccaccggctg gccgatgtag tcggacagcg
     2581 ccagcgggcg aatcgcacgg tccagctgct cgtcgcggtc gcgactgctg gcggtgatca
     2641 ggcggtcggc gtctatcact t
//
LOCUS       DATIHC010000816         2269 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4602, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000816 DATIHC010000000
VERSION     DATIHC010000816.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2269)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2269
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4602"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..319)
                     /locus_tag="VLF16_13645"
     CDS             complement(<1..319)
                     /locus_tag="VLF16_13645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007979140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2855 family protein"
                     /protein_id="HSX71967.1"
                     /translation="MTSVVKATRLLTRKGQLDQSRIDHLDFDLTPRPGEVILKPDHFA
                     LTTNNITYAAFGDSMRYWDFYPTGEAEWGHMPVWGFADVVASAVEGIEVGARYYGYYP
                     IATY"
     gene            370..1029
                     /locus_tag="VLF16_13650"
     CDS             370..1029
                     /locus_tag="VLF16_13650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004579546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HSX71968.1"
                     /translation="MHGKGFGNRNSKLGEGPKPRTKPLKRPRQARAVFTVEAIYQAFV
                     RILQRDGWDAVTTRSVAMESGFAVGTLYEYFPSKEALLSGYVRHCIEQLLQLLDQQVV
                     APELDWQQRITRLLWLSCGPQESMYRLFTFEMARQEAQVAEPKHHLRAYQELLAKWQE
                     VFAACGDLPAPVSAATVEALFLMVWGGRRYAALAQLDEPRLHAWLSETERLILHTLRR
                     P"
     gene            complement(1068..1523)
                     /locus_tag="VLF16_13655"
     CDS             complement(1068..1523)
                     /locus_tag="VLF16_13655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71969.1"
                     /translation="MSRLALVLVLLASTLGGCTAHGGDYRYDSYPRYRVYYDDDRNYH
                     RWHRDRYEERRHSHYAPGYDGRYQWHDDRRRYRDHRYQAPRHGWDQRYRDHDRRGHSH
                     WQGQGWQRHDGYSRDRDRRYDRGHVREHDGRRNRHSQRGESVRGWRLSN"
     regulatory      1831..1934
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00442"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="guanidine-I (ykkC/yxkD leader) riboswitch;
                     Guanidine-I riboswitches control genes whose products are
                     involved in modification or pumping out guanidine as a
                     toxic compound from bacteria; This is class of guanidine
                     riboswitches is based on the ykkC/yxkD leader; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="guanidine"
                     /db_xref="RFAM:RF00442"
     gene            1988..>2269
                     /locus_tag="VLF16_13660"
     CDS             1988..>2269
                     /locus_tag="VLF16_13660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004881210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid kinase"
                     /protein_id="HSX71970.1"
                     /translation="MLTRLLSCSLLVLLLLQPAHAAPQEKRPFKVCWSIYAGWMLWGY
                     MAEQGIVDKWAKKYGIEIQVEQVPDYVASIEQYTAGQYDACSMTNMDALT"
BASE COUNT          377 a          731 c          774 g          387 t
ORIGIN      
        1 cgtaggtggc gatcggatag tagccgtaat accgcgcacc gacctcgatg ccctcgaccg
       61 ccgaggcgac cacatcggcg aagccccaca ccggcatgtg tccccactcg gcctcgccgg
      121 tcgggtagaa gtcccagtag cgcatggagt cgccgaaggc cgcgtaggtg atgttgttgg
      181 tggtcagggc gaagtggtcg ggcttgagaa tgacttcgcc gggccgcggg gtcaggtcga
      241 agtcgaggtg gtcgatacgg ctctggtcga gctgtccctt gcgggtgagc aggcgagtgg
      301 ccttgacgac tgaggtcatt tgcgggtcct ctggcgatcg cgattgacga gcgaacaggg
      361 taagcggcga tgcacggaaa ggggttcgga aaccggaaca gcaagctcgg cgaggggccc
      421 aagcccagaa ccaagccgct caagcgccca cgccaggccc gcgccgtctt caccgtggag
      481 gcgatctacc aggcctttgt tcggattctg caacgcgatg gctgggacgc cgtcaccacg
      541 cgctcggttg ccatggagtc gggcttcgcc gtgggcacgc tctacgagta tttccccagc
      601 aaggaggcgc tgctgtccgg ttacgtgcgc cactgcatcg agcagcttct gcagctgctc
      661 gaccagcagg tggtcgcgcc ggaactggac tggcagcagc ggatcacccg cctgctctgg
      721 ctgagctgcg ggccgcagga gtcgatgtat cggttgttca ccttcgaaat ggcgcgtcag
      781 gaggcgcagg tcgccgaacc caaacaccac ctgcgcgcct accaggaact gctcgccaag
      841 tggcaggaag tgttcgccgc ctgcggcgac ctccccgctc cggtttcagc cgccacggtc
      901 gaggcgctgt ttctgatggt ctggggcgga cgccgctacg cggcgctcgc ccagctcgac
      961 gagccgcgcc tgcatgcctg gctgagcgag acggaacggc tgatcctgca tacgctgcgg
     1021 cgcccttagc gtttcccgga taaccggccg ctgccgatgg gttcgcccta gttggagagc
     1081 ctccagccac gcacgctttc gccgcgctgg gaatggcgat tgcgccggcc gtcgtgttcg
     1141 cggacgtggc cacggtcgta gcgacggtcg cgatccctgg aatagccgtc gtggcgctgc
     1201 caaccctgcc cctgccaatg ggaatggccg cggcggtcat ggtcgcggta gcgctggtcc
     1261 cagccatggc gcggcgcctg gtagcgatga tcgcggtagc gccggcggtc gtcgtgccac
     1321 tggtagcggc cgtcgtaacc cggcgcgtag tgggagtggc ggcgctcctc gtagcggtcg
     1381 cggtgccagc ggtggtagtt gcgatcatcg tcgtaataga cgcggtagcg cggatagctg
     1441 tcgtagcggt aatcaccgcc atgggcggtg cagccgccga gtgtcgaagc gagcagaacg
     1501 aggacaagtg ctagacggga catggcggcc tccttcgacc gctgggaagg cgccggcgaa
     1561 tgccggctcc gggactgctc ccactggctt ggatcatgcg tctgggacga agtgcagcgg
     1621 cccggcccgg cgaaagttgt atcggcgcgt ttcgcaccat gccggcccgg cctcgcacca
     1681 gcatggcgca gccgctcttc catgagcatt cgacaaatgc gatggctgtc acgaaaaccc
     1741 cgtgccagag cggcctggca cgccattcgc tatgactccg ccgcacagga tgtgccggcc
     1801 cgtcagcggg ctcggccgct gacactgcat cgaatggccg actagggttc cggcccgcct
     1861 cccacggcgg gcgactggtc cgagagtggg cgaccccgac aggggttaca cggcgggaca
     1921 aaagcccggg agaacgcgcg ccatggcggc cgccatcctg tctcccgtcc actgccccga
     1981 ggttgtcatg ctgactcgtc tgttgtcctg ttcactgctc gtcctgctgc tcctgcagcc
     2041 cgcccacgcc gcgccccaag agaaacgccc gttcaaggtc tgctggtcga tctatgccgg
     2101 ctggatgctg tggggctaca tggccgagca aggcatcgtc gacaaatggg cgaagaagta
     2161 cggcatcgag atccaggtcg agcaggtgcc ggactacgtc gcttccatcg agcaatacac
     2221 cgccggccag tacgacgcct gctcgatgac caacatggat gcgctgacc
//
LOCUS       DATIHC010000817         2151 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37289, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000817 DATIHC010000000
VERSION     DATIHC010000817.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2151)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2151
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37289"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..510
                     /locus_tag="VLF16_13665"
     CDS             <1..510
                     /locus_tag="VLF16_13665"
                     /inference="COORDINATES: protein motif:HMM:NF018533.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HSX71971.1"
                     /translation="RKDRPPRLGLGFDNGELNFYGCSVRLLDEPPELLYDWRSDTLSE
                     RWDPALALDKLRAMPDTQVCDAILDQEVFAGAGNIFKNEVLFRIRVHPLSTLGALPAE
                     KLQELVTEVRQYAFDFLAWKRAFVLKQHWQAHRQSRCPRCAIALSKAKLGRTQRQSYY
                     CEQCQIRYG"
     gene            complement(568..2145)
                     /gene="guaA"
                     /locus_tag="VLF16_13670"
     CDS             complement(568..2145)
                     /gene="guaA"
                     /locus_tag="VLF16_13670"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HSX71972.1"
                     /translation="MAHDIHAHRILILDFGSQYTQLIARRVREIGVYCEIHPFDMDNE
                     AIRAFAPRGIILAGGPESVHVADSPRAPQAVFDLNVPLFGICYGMQTMAEQLGGKVQG
                     SDLREFGYARVDVVGKARLLDGIEDHVDTDGVLGLDVWMSHGDKVTAMPEGFHILAST
                     PSCPIAAMADDSRAYYGVQFHPEVTHTKQGGRILSRFILDICGCEALWTPANIVEDAI
                     AAVRAQVGSNKVLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRHQEGDQVMAM
                     FAENMGVKVIRANAEDKFLGRLAGVADPEEKRKIIGRTFIEVFDEEATKLQDVKFLAQ
                     GTIYPDVIESAGAKTGKAHVIKSHHNVGGLPEDMQFSLVEPLRELFKDEVRKIGLELG
                     LPYDMVYRHPFPGPGLGVRILGEVKKEYADLLRLADHIFIEELRNFDWYHKTSQAFVV
                     FQPVKSVGVVGDGRRYAWVVALRAVETIDFMTARWAHLPYELLEKVSNRIINEISGIS
                     RVTYDVSSKPPATIEWE"
BASE COUNT          352 a          695 c          738 g          366 t
ORIGIN      
        1 cgcaaggacc gtccgccgcg cctcggcctg ggcttcgaca acggcgagct gaacttctac
       61 ggctgctcgg tgcgcctgct ggacgagccg ccggagctgc tctacgactg gcgcagcgat
      121 acgctctccg agcgctggga cccggccctg gcgctggaca agctgcgcgc catgccggac
      181 acgcaggtgt gcgacgccat tctcgaccag gaggtgttcg ccggggccgg caacatcttc
      241 aagaacgaag tgctgttccg catccgcgta cacccgctga gcaccctggg cgccctgccc
      301 gccgagaagc tgcaggagct ggtgaccgag gtccgccagt acgccttcga tttccttgcc
      361 tggaagagag ccttcgtgct caagcagcac tggcaggcgc accggcaaag ccgctgcccg
      421 cgctgcgcca ttgccctgag caaggccaag ctggggcgca ctcagcgcca aagctattac
      481 tgcgagcagt gccagattcg ctacggctga aacgcaaacg gggcgagtgt cgccacccgc
      541 cccgttcgcc gtaccgctag cgcggcatca ttcccactcg atggtcgccg gcggcttgct
      601 cgacacgtcg taggtgacgc gagagatgcc ggagatctcg ttgatgatgc ggttggagac
      661 cttttccagc agctcgtagg gcaggtgcgc ccagcgcgcg gtcatgaagt cgatggtttc
      721 cacggcgcgc agggccacga cccaggcgta gcgacggccg tcgccgacca cgccgaccga
      781 tttcaccggc tggaacacca cgaaggcctg gctggtcttg tggtaccagt cgaagttgcg
      841 cagctcctcg atgaagatgt ggtcggccag acgcagcagg tcggcgtact ccttcttcac
      901 ctcgccgagg atgcgcacgc ccaggcccgg gcccgggaac gggtggcggt agaccatgtc
      961 gtagggcagg cccagctcca ggccgatctt gcgcacctcg tccttgaaca gctcgcgcag
     1021 cggctcgacc agggagaact gcatgtcctc cggcagaccg ccgacgttgt ggtgggactt
     1081 gatcacatgg gccttgccgg tcttggcgcc ggccgactcg atcacgtccg ggtagatggt
     1141 gccctgggcg aggaacttca cgtcctgcag cttggtggcc tcctcgtcga atacctcgat
     1201 gaaggtgcgg ccgatgatct tgcgcttctc ttccgggtcg gcgacgccgg ccaggcggcc
     1261 gaggaacttg tcctcggcat tggcgcggat caccttgacg cccatgttct cggcgaacat
     1321 ggccatcacc tggtcgcctt cctggtggcg cagcaggccg ttgtcgacga acacgcaggt
     1381 cagctggtcg ccgatggcct tgtgcagcag ggccgcgacc accgaggaat cgacgccgcc
     1441 ggacaggccc agcagcacct tgttcgagcc gacctgggcg cgcacggcgg cgatggcgtc
     1501 ttcgacgatg ttggccgggg tccacagggc ctcgcagccg cagatgtcga ggatgaagcg
     1561 cgagaggatg cgaccgccct gtttggtgtg ggtcacttcc gggtggaact gcacgccgta
     1621 gtaggcgcgg ctgtcgtcgg ccatggcggc gatcgggcag ctcggggtgc tggcgaggat
     1681 gtggaagcct tccggcatgg cggtgacctt gtcgccgtgg ctcatccaca catcgaggcc
     1741 gagcacgccg tcggtatcca catggtcttc gatgccgtcg agcaggcggg ccttgccgac
     1801 cacgtcgacg cgggcgtagc cgaattcgcg caggtcggaa ccctgtacct tgccgccgag
     1861 ctgctcggcc atggtctgca tgccgtagca gatgccgaac aacggcacgt tgagatcgaa
     1921 caccgcctgc ggcgcacgcg ggctatcggc gacgtgtacc gactccgggc caccggcgag
     1981 gatgatgccg cgcggggcga aggcgcggat cgcctcgttg tccatgtcga acgggtggat
     2041 ctcgcagtac acgccgatct cgcgcacgcg gcgggcgatc agctgggtgt actgggaacc
     2101 gaagtcgaga atgaggatgc ggtgggcgtg aatgtcgtgg gccatggccg t
//
LOCUS       DATIHC010000818         3634 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_11654, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000818 DATIHC010000000
VERSION     DATIHC010000818.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3634
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11654"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1130
                     /gene="dnaJ"
                     /locus_tag="VLF16_13675"
     CDS             <1..1130
                     /gene="dnaJ"
                     /locus_tag="VLF16_13675"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HSX71973.1"
                     /translation="AKRDFYEVLGVERGASEADLKKAYRRLAMKYHPDRNPDDKAAEE
                     KFKEANEAYEVLSDAAKRSAYDQYGHAGVDPQMGGGGGFGAGGANFSDIFGDVFSDFF
                     GGGGRGGQRGGAQRGSDLRYTLELDLEEAVRGTTVTIRVPTLVGCKTCDGTGAKKGTS
                     PVTCTTCGGIGQVRMQQGFFSVQQTCPRCHGSGKMITDPCGSCHGQGRVEESKTLSVK
                     VPAGVDTGDRIRLSGEGEAGSQGGPAGDLYVVVNVREHPIFQRDGKHLYCEVPISFAD
                     AALGGELEVPTLDGRVKLKIPEGTQTGKLFRLRGKGVAPVRGGGAGDLMCRVAVETPV
                     NLDKRQRELLEEFRKSLEGDSSHSPKASGWFDGMKRFFGDI"
     gene            1215..2018
                     /gene="dapB"
                     /locus_tag="VLF16_13680"
     CDS             1215..2018
                     /gene="dapB"
                     /locus_tag="VLF16_13680"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017277904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HSX71974.1"
                     /translation="MRRIAVMGAAGRMGKILIEAIGQAEGAQLTAAVDRPDSSLIGAD
                     AGELVAQGKLGVTLAGDLDAVLDRFDVLIDFTHPSVTLKNLEVCRQAGKAMVIGTTGF
                     SPEEKQLLNEAAKEIPIVFAANYSVGVNLCLKLLDTAARVLSDDVDIEIIEAHHRHKV
                     DAPSGTALRMGEVVASALGRDLQKVAVYGREGQTGARERETIGFATVRADDVVGDHTV
                     LFAAEGERVEITHKASSRMTFAKGAVRAALWLQAQPAGLYDMQDVLGLN"
     gene            2204..3340
                     /gene="carA"
                     /locus_tag="VLF16_13685"
     CDS             2204..3340
                     /gene="carA"
                     /locus_tag="VLF16_13685"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HSX71975.1"
                     /translation="MTKPAILALADGSIFRGEAIGADGHTIGEVVFNTAMTGYQEILT
                     DPSYAQQIVTLTYPHIGNTGTTSEDSESNRVWAAGLIIRDLPLLSSNWRNKQPLDEYL
                     KENGTVAIAGIDTRRLTRILREKGSQNGCILAGEDATEEKALELARSFPGLKGMDLAK
                     VVSCTERYEWRSSVWNLKSDSHPEIDASELPYHVVAYDYGVKVNILRMLVARGCRITV
                     VPAQTPASEVLALNPDGVFLSNGPGDPEPCDYAIAAIKDVLQTEIPVFGICLGHQLLA
                     LASGAKTVKMGTGHHGANHPVQDLDTGVVMITSQNHGFAVDEASLPANLRAIHKSLFD
                     GTLQGIERTDKDAFSFQGHPEASPGPHDVAPLFDRFIEAMAKRR"
     gene            3377..>3634
                     /locus_tag="VLF16_13690"
     CDS             3377..>3634
                     /locus_tag="VLF16_13690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71976.1"
                     /translation="MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALKEEGFRV
                     ILVNSNPATIMTDPEMADRTYIEPLTVEAVTKVIEKEQPDAI"
BASE COUNT          686 a         1162 c         1198 g          588 t
ORIGIN      
        1 tggccaaacg tgacttttac gaagtgctcg gcgtggagcg cggcgccagc gaggcggacc
       61 tgaagaaggc ctatcgccgc ctggcgatga agtaccaccc cgaccgcaat ccggatgaca
      121 aggccgcgga agagaaattc aaggaggcca acgaggccta cgaagtgctt tccgatgccg
      181 ccaagcgctc ggcctacgac cagtacggcc atgccggcgt cgacccgcag atgggtggcg
      241 gcggcggttt cggtgcgggc ggcgcgaact tctccgacat cttcggcgat gtgttcagcg
      301 acttcttcgg tggcggcggt cgcggcggtc agcgtggcgg tgcccagcgc ggcagcgacc
      361 tgcgttatac cctcgagctg gacctggaag aggcggtgcg cggcaccacc gtgaccatcc
      421 gcgtgccgac cctggtcggc tgcaagacct gcgacggtac cggtgccaag aagggcacca
      481 gtccggtgac ctgtaccacc tgtggtggca tcggccaggt gcgcatgcag cagggcttct
      541 tctcggtcca gcagacctgt ccgcgctgcc acggcagcgg caagatgatc accgacccct
      601 gtggcagttg ccacggtcag ggccgtgtgg aagaaagcaa gaccctgtcg gtcaaagtgc
      661 cggcgggcgt cgacaccggc gaccgcatcc gtctgtcggg tgaaggtgag gcaggttccc
      721 agggcgggcc ggctggcgac ctctatgtag tggtcaatgt gcgcgagcac ccgatcttcc
      781 agcgcgacgg caagcacctg tactgcgagg tgccgatcag cttcgccgat gcggcgctgg
      841 gcggcgagct ggaagtgccg accctggacg gccgcgtcaa gctgaagatc ccggagggca
      901 cccagaccgg caagctgttc cgcctgcgcg gcaagggcgt ggcgccggtg cgtggcggtg
      961 gcgccggcga cctgatgtgc cgggtggcgg tggagacgcc ggtcaacctg gacaagcgtc
     1021 agcgcgagct gctggaggag ttccgcaagt cgctggaggg cgacagctcc cattcgccca
     1081 aggccagcgg ctggttcgac ggcatgaagc gtttcttcgg tgatatttga gtaaatgccg
     1141 cggacggcga gtcagggcgc gggtaatcgt gcgccgggcc cgccgctcga ggcttgcagc
     1201 gtggagctga ggttatgcga cgtattgcag tgatgggcgc cgccgggcgc atgggcaaga
     1261 ttctgatcga ggcgatcggc caggcggaag gtgcgcagct gactgcggcc gtcgatcgcc
     1321 ccgacagcag tctgatcggc gccgatgccg gcgagctggt ggcgcagggc aagctgggcg
     1381 tgacgctggc gggtgatctg gatgcggtac tggatcggtt cgacgtgctg atcgacttca
     1441 cccatccgtc ggtgaccctg aaaaacctgg aagtctgccg ccaggcgggc aaggccatgg
     1501 tcatcggcac taccggcttc tcgccggagg agaagcagtt gctgaacgag gcggccaaag
     1561 aaattccgat cgtcttcgct gccaactaca gcgtcggcgt gaatctctgc ctcaagctgc
     1621 tggacactgc cgcccgcgtg ctgagcgacg acgtggacat cgagatcatt gaggcgcatc
     1681 accggcacaa ggtcgacgcg ccgtccggta ccgcgctgcg catgggcgag gtggtggcca
     1741 gtgcgctggg tcgcgacctg cagaaggtgg cggtctacgg gcgcgagggt cagaccggcg
     1801 cccgcgagcg cgagaccatc ggcttcgcca ccgtgcgcgc cgacgatgtg gtcggcgatc
     1861 acaccgtgct gttcgccgcc gagggcgagc gcgtggagat cacccacaag gcttccagtc
     1921 gcatgacctt cgccaagggc gcggtgcgcg ccgcgctttg gctgcaggcg cagccggccg
     1981 ggctttatga catgcaggac gtgctggggc tgaactgaaa tgcctttttg gtccatgcaa
     2041 ttgctggacc gaaaagggcc tttcctgtaa gctgcccgct ttagtgtgtc cactaaaagt
     2101 tacgcagaat gaatcagata aagaagcggg gtgacggtca atacgtcatc ccgctttttt
     2161 acaacctgcg tttgagcaag cagcagatct aagggaggtc ttcttgacta agccagccat
     2221 actcgccctc gctgacggca gcatcttccg cggcgaagcc atcggggccg acgggcatac
     2281 catcggtgag gtggtgttca acaccgccat gaccggctat caggaaatcc tcaccgatcc
     2341 ctcctatgcc cagcagatcg tcaccctgac ctacccgcac atcggcaata ccggcaccac
     2401 ctcggaagat tccgagtcca accgggtctg ggccgccggc ctgatcatcc gcgacctgcc
     2461 gctgctttcc agcaactggc gcaacaagca gccgctggac gagtacctga aggaaaacgg
     2521 taccgtcgcc atcgccggca tcgacacccg tcgtctgacc cgcatcctgc gcgaaaaagg
     2581 ttcgcagaac ggctgcatcc tggctggcga agatgccacc gaggaaaagg ccctggagct
     2641 ggcgcgcagc ttccccggcc tcaagggcat ggacctggcc aaggtggtca gctgcaccga
     2701 gcgctacgag tggcgctcca gcgtgtggaa cctgaagagc gacagccacc cggaaatcga
     2761 tgccagtgag ctgccgtacc acgtggtggc ctatgactac ggcgtcaagg tcaacatcct
     2821 gcgcatgctg gtcgcgcgcg gctgccgcat caccgtggtg ccggcgcaga ctccggccag
     2881 cgaagtgctg gccctgaacc cggacggcgt tttcctctcc aacggtcccg gtgaccccga
     2941 gccgtgcgac tacgcgatcg ccgcgatcaa ggacgtgctg cagaccgaga ttccggtgtt
     3001 cggcatctgc ctcggccacc agctgctggc cctggcctcg ggtgccaaga ccgtgaagat
     3061 gggcaccggc caccacggcg ccaaccaccc ggtacaggac ctcgacacgg gtgtggtgat
     3121 gatcaccagc cagaaccacg gcttcgccgt ggacgaggcc agcctgccgg ccaacctgcg
     3181 ggcgatccac aagtcgctgt tcgacggcac cctgcagggc atcgagcgta ccgacaagga
     3241 cgccttcagc ttccagggcc acccggaagc cagcccgggc ccgcacgacg tcgccccgct
     3301 gttcgaccgc ttcatcgaag ccatggccaa gcgccgttaa gccccgccga ctgacccaag
     3361 gattcgagta accgctatgc caaaacgtac agacatcaaa agcatcctga tcctcggcgc
     3421 cggccccatc gttatcggcc aggcctgcga gttcgactac tccggcgccc aggcctgcaa
     3481 ggccctgaag gaagagggtt tccgcgtcat cctggtgaat tccaacccgg cgaccatcat
     3541 gaccgacccg gagatggccg accgcacgta catcgagcca ctcaccgtcg aagcggtcac
     3601 caaggtcatt gaaaaggaac agccggacgc aatt
//
LOCUS       DATIHC010000819         2188 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_4635, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000819 DATIHC010000000
VERSION     DATIHC010000819.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2188)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2188)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2188
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4635"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..594)
                     /locus_tag="VLF16_13695"
     CDS             complement(<1..594)
                     /locus_tag="VLF16_13695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Clp protease N-terminal domain-containing
                     protein"
                     /protein_id="HSX71977.1"
                     /translation="MLNRELEVTLNLAFKEARAKRHEFMTVEHLLLALLDNEAAATVL
                     RACGANLDKLRQDLQEFIDSTTPLIPQHDEDRETQPTLGFQRVLQRAVFHVQSSGKRE
                     VTGANVLVAIFSEQESQAVFLLKQQSVARIDVVNYIAHGISKVPGNADHHENEQEMSD
                     DEGGESSASGNPLDAYASNLNELSRLGRIDPLVGREHE"
     gene            complement(623..985)
                     /gene="clpS"
                     /locus_tag="VLF16_13700"
     CDS             complement(623..985)
                     /gene="clpS"
                     /locus_tag="VLF16_13700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003240656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HSX71978.1"
                     /translation="MHSSSQIRLTFNQDRPGEREDDSGGLAVEEAKPALQAPPLYKVL
                     MFNDDYTPMDFVVEVLELFFGMNREAATKVMLTVHTEGRAVCGLFTRDIAETKAMQVN
                     QYARDSQHPLLCEIEKDG"
     gene            1214..1477
                     /gene="cspD"
                     /locus_tag="VLF16_13705"
     CDS             1214..1477
                     /gene="cspD"
                     /locus_tag="VLF16_13705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008156 - negative regulation of DNA
                     replication [Evidence IEA];
                     GO_process: GO:0009409 - response to cold [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein CspD"
                     /protein_id="HSX71979.1"
                     /translation="MLSGKVKWFNNAKGYGFIVADGRDEDLFAHYSAIQMDGYKTLKA
                     GQAVKFDILQGPKGLHAVNISSILATSESPATTSTPQSTPVEA"
     gene            complement(1541..>2188)
                     /locus_tag="VLF16_13710"
     CDS             complement(1541..>2188)
                     /locus_tag="VLF16_13710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019689834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HSX71980.1"
                     /translation="SLDGTKRLVRKALQYAVDNDRSSVTIVHKGNIMKFTEGAFKDWG
                     YEVARDEFGAELLDGGPWMQFKNPNTGKNIVVKDAIADAMLQQILLRPAEYDVIATLN
                     LNGDYLSDALAAEVGGIGIAPGANLSDTVAMFEATHGTAPKYAGQDKVNPGSVILSAE
                     MMLRHMGWTEAADLIIKGTNGAIAAKTVTYDFERLMDDAKLLSCSQFGDALIAHM"
BASE COUNT          431 a          647 c          650 g          460 t
ORIGIN      
        1 ctcatgctca cgaccgacca gaggatcgat acggccgagg cgcgacagtt cgttgaggtt
       61 gctggcgtag gcatccagag gattaccgga agccgaggac tcaccgccct catcgtccga
      121 catttcctgc tcgttctcgt ggtgatcggc attgccaggc accttggaga taccgtgagc
      181 gatgtaattg accacgtcga tgcgcgccac gctctgctgc ttgagcagga acacggcctg
      241 gctctcctgc tcgctgaaga tggccaccaa tacgttggca ccggtcactt cgcgtttgcc
      301 ggagctctgc acatggaaca ccgcgcgctg cagcacgcgc tgaaagccca gggtcggctg
      361 ggtttcacgg tcctcatcgt gctgcgggat cagcggcgtg gtggagtcga tgaactcctg
      421 cagatcctgc cggagcttgt ccaggttggc gccacaggcg cgcaacacgg tcgcggctgc
      481 ctcgttatcc agcagggcca ggagcaagtg ctcgaccgtc atgaactcat ggcgcttggc
      541 acgtgcctcc ttgaaggcca gattcagggt gacttccagc tctcgattca acatagcctc
      601 acctcttcca agcgggacgg catcaaccgt ccttttctat ctcacagagt agcggatgct
      661 ggctatcccg ggcgtactgg ttgacctgca tcgctttggt ctccgcgatg tcgcgggtga
      721 acaacccgca cactgcccgc ccttcggtat ggacagtaag catgaccttc gtcgccgcct
      781 cgcggttcat gccaaaaaac agctccagta cttcgaccac aaaatccatc ggggtgtagt
      841 cgtcgttgaa catcagcacc ttgtacagcg gcggcgcctg caacgctggc ttggcctctt
      901 ccacggccag gccgccggag tcatcttccc gctcgccggg acgatcctga ttgaatgtta
      961 gtcgaatctg gctgcttgaa tgcatgctga actaaagctg ttatgaccgg tcggaggtgg
     1021 atgctagacg gagtttgacc ggcttctcgg cggccgtcct agcgccttga ctaaaggcaa
     1081 aacggtgtta caaacagtga ataccctact cgggtatcgg ggttccgcgg ctagtgccaa
     1141 acggccgtag tcggacgtgg agctgaagtg gatgatactc cagtaatgga gtcctttgca
     1201 gagggatgtc agcatgctca gcggtaaggt caagtggttc aacaacgcca aaggctacgg
     1261 ctttatcgtg gccgatggcc gagatgagga cctgttcgcc cactactcgg ctatccagat
     1321 ggacggctac aagactctca aggccggcca agcggtcaag ttcgatattc tgcaaggccc
     1381 gaagggtctg cacgccgtga atatcagctc gattctggca accagtgaat ccccggcgac
     1441 cactagcacg ccgcaaagca ctccggtaga agcctgaaaa agagtccaat aacaaaaagg
     1501 ccggtcattg accggccttt ttttgtttac cgcttgtcgc ttacatgtgg gcgatgaggg
     1561 catcgccgaa ctgggagcag gacagcagct tggcgtcgtc catcaggcgc tcgaagtcat
     1621 aggtcacagt ctttgcggcg atggcgccgt tggtgccctt gatgatcaga tcggcagctt
     1681 cggtccagcc catgtggcgc agcatcatct cggccgagag gatgaccgaa cctgggttga
     1741 ccttgtcctg accggcatac ttcggcgcgg tgccgtgagt agcttcgaac atggccacgg
     1801 tgtcggacag gttggcgccc ggagcgatac cgataccgcc tacttcggcc gccagggcgt
     1861 cggacaggta gtcaccgttc aggttgaggg tagcgatcac gtcgtactcc gccggacgca
     1921 gcagaatctg ctgcagcatg gcgtcggcga tggcatcctt cacaacgatg ttcttgccgg
     1981 tgttcgggtt cttgaactgc atccacgggc cgccgtccag cagctcggcg ccgaactcgt
     2041 cacgcgcaac ctcgtagccc caatccttga aggcaccttc ggtgaacttc atgatgttgc
     2101 ccttgtggac gatggtcacg gagctgcgat cgttgtccac ggcgtactgc agagccttgc
     2161 gcaccagacg cttggtgccg tccaggga
//
LOCUS       DATIHC010000820         2928 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_24444, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000820 DATIHC010000000
VERSION     DATIHC010000820.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2928
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24444"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1107
                     /locus_tag="VLF16_13715"
     CDS             <1..1107
                     /locus_tag="VLF16_13715"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019361919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding oxidoreductase"
                     /protein_id="HSX71981.1"
                     /translation="PPLARDYRQRLEAQANIEHLPATRVVALAGSKALLVEDPEQGRV
                     IEYDRLILCTGARELLLPFPGWTLPGVTGAGGLQALIKGGMPVAGERIVISGSGPLLL
                     ASAATAKDNGATVLNIAEQAGWSAVAGFAAQLPRWPHKLLQSFGLLHPGYRANSHVVE
                     AMGDGRLEAVRLSIGGQLREIACERLACGFGLIPNLQLGQALGCRIDNGAFAVDAWQA
                     TSLADHYAAGESTGFGGSEKALVEGAIAGHAAVDERDAAQRLWSQRQRWHGFATALNA
                     AFALRDEVKHLARPDTLICRCEDVPLSAVADHQGWSQAKMASRCGMGACQGRICGGAA
                     QALFGWQPPAPRPPFSPARIDTLLQLRGEPHSQA"
     gene            complement(1092..1520)
                     /locus_tag="VLF16_13720"
     CDS             complement(1092..1520)
                     /locus_tag="VLF16_13720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71982.1"
                     /translation="MKRFNVLFAVPLLLAFGCQAGPDATSTEWSQLRAQRGHFEGGTW
                     NKELDAWQGRKHQVMQRMADRLLEQRPHEEGVRALMGEPDRVVPAGSAEHADWLRRTE
                     WRGTPGGTLWSYHWRGNHDQLLVAFDGQRVAAVGWLYAWE"
     gene            1792..>2928
                     /locus_tag="VLF16_13725"
     CDS             1792..>2928
                     /locus_tag="VLF16_13725"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004181 - metallocarboxypeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M14 family zinc carboxypeptidase"
                     /protein_id="HSX71983.1"
                     /translation="MIKRTLTLAIGAGITSLCLLDIAQAHTAAKAQEDFLLLEQEKSN
                     NQVYKAFFPSLEIARKAAISFHGQLLESHYDQGYLIMELTEEEQQKLAVFGFTFEVAA
                     DFIAKRNQVLGQIQQRLQQRSLSAGAASDVSIASVPGYACYETVEETYAAAAGMAAQR
                     PQLAEWLMVGQSWEKTQGLGGYDIGVLKLTNRDKPGDKPKLLINSAIHAREYTTAPLV
                     LAFARWLVDGYGVDPDATWILDHHEVHLMLQTNPDGRKKAETGLSWRKNTNQNYCGPN
                     SNSRGADLNRNFTFGWNSTNGQGSSGAQCNETYRGPSAGSEPEVQALEAYARSLWPDR
                     RGPNRGDAAPSSTSGIHLDIHSYSELVLWPWGDTGQPAPNGTALQ"
BASE COUNT          520 a         1076 c          927 g          405 t
ORIGIN      
        1 ccgccactgg cccgcgacta tcgccagcgc ctggaggcgc aagccaatat cgaacatctg
       61 ccggccaccc gcgtggtcgc cctggccggg tccaaggcgc tgctggtgga agaccccgag
      121 cagggccggg tgatcgaata cgacaggctg attctgtgca ccggcgcccg cgagctgctg
      181 ctgcccttcc ccggctggac cctgcccggt gtcaccggcg ccggcggctt gcaggcgctg
      241 atcaagggcg gcatgccggt ggccggcgag cgcatcgtca tctccggcag cggcccgctg
      301 ctgctggcca gcgccgccac ggcgaaggac aacggcgcga cagtgctgaa catcgccgaa
      361 caggccggct ggtccgccgt ggccggcttt gccgcacagc tgccgcgctg gccgcacaag
      421 ctgctgcagt cgttcggcct gctccatccc ggctaccggg cgaacagcca cgtggtcgaa
      481 gcgatgggcg atggtcgcct ggaggcggtg cgcctgagca tcggcgggca gcttcgcgaa
      541 atcgcctgcg agcgcctggc ctgcggcttc ggcctgatcc ccaacctgca gctcggccag
      601 gccctgggct gccgcatcga caacggcgcc ttcgccgtcg atgcctggca ggccaccagc
      661 ctggccgatc actatgccgc cggcgagagc accggtttcg gcggcagcga gaaggcactg
      721 gtggaaggcg ccatcgccgg ccatgccgcg gtggacgagc gcgacgcggc gcagcgcctg
      781 tggtcgcagc gccagcgctg gcacggcttc gccactgcat tgaacgccgc cttcgccctg
      841 cgcgacgagg tcaagcacct ggccaggccg gacaccctga tctgccgctg cgaagacgtg
      901 ccgctatcgg ccgtggccga tcaccagggc tggagccagg ccaagatggc cagccgctgc
      961 ggcatgggcg cctgccaggg ccggatctgc ggcggcgccg cccaggcact gttcggctgg
     1021 caaccgccgg caccacggcc gccgttcagt ccggcgcgta tcgacaccct gctgcagctg
     1081 cgcggcgagc ctcactccca ggcgtagagc cagccgaccg cggcgacccg ctggccatcg
     1141 aaggccacca gcaattggtc gtgattgccg cgccagtggt agctccacaa cgttccgccc
     1201 ggcgtgccgc gccactcggt gcggcgcagc caatcggcat gctcggccga accagccggc
     1261 acgacccgat ccggctcgcc catcagcgca cgcacaccct cctcgtgcgg ccgctgctcc
     1321 agcaggcgat cggccatgcg ctgcatcact tgatgcttgc gcccctgcca ggcatccagt
     1381 tccttgttcc aggtgccgcc ttcgaaatgc ccgcgctgcg cgcgcagttg cgaccactct
     1441 gtggacgtcg catccggccc cgcctgacag ccgaaggcca gcagcagcgg cacggcgaac
     1501 agcacgttga agcgtttcat tcctgaccct ccgttcaagt catcttgtcg ccaacctgcc
     1561 gcgattgacg cttatctccg gaaaattgac agcttcccgg agggcttcta gcttccattc
     1621 actcttgctg ccagaccggc ctcctcccga cgacacgcca ggaagggaat tcccaacgcc
     1681 tgtgcagtcg gcaaccagag cgaagccgta cccgtcgcga cccacaaggc ctcgaccgcc
     1741 cgtgtcgctt atcgagcgac gcaacccatc acatggacag gaacagcaag aatgataaaa
     1801 cgcacgctaa cgctcgccat cggcgcgggc atcacttccc tctgcctgct cgacatcgct
     1861 caggcccaca ccgcggccaa ggcccaggaa gacttcctgc tgctcgagca ggagaagagc
     1921 aacaaccagg tgtacaaggc cttcttccca agcctggaaa tcgcccgcaa ggccgccatc
     1981 agcttccacg gccagttgct cgaatcgcac tacgaccagg gctacctgat catggagctg
     2041 accgaggagg aacagcagaa gctggcggtg ttcggcttca ccttcgaggt ggccgccgac
     2101 ttcatcgcca agcgcaacca ggtgctcggg cagatccagc agcgcctgca acagcgtagc
     2161 ctgagcgccg gcgcggccag cgacgtgagc atcgccagcg ttcccggcta tgcctgctac
     2221 gaaacggtgg aagagaccta cgcggcggcc gccggcatgg ccgcccagcg cccgcagctg
     2281 gccgaatggc tgatggtcgg ccagtcctgg gagaagaccc agggcctggg cggctatgac
     2341 atcggcgtgc tcaagctgac caacagggac aagccgggcg acaagcccaa gctgctgatc
     2401 aacagcgcca tccacgcccg cgagtacacc accgcgccgc tggtgctggc cttcgcccgc
     2461 tggctggtgg acggctatgg cgtggacccg gacgccacct ggatcctcga ccatcatgaa
     2521 gtgcacctga tgctgcagac caacccggac gggcgtaaga aggccgagac cgggctgtcc
     2581 tggcgcaaga acaccaacca gaactactgc gggccgaaca gcaacagccg cggcgccgac
     2641 ctcaaccgca acttcacctt tggctggaac agcaccaacg gccagggctc cagcggcgcc
     2701 cagtgcaacg agacctaccg cggccccagc gccggctcag aacccgaggt gcaggcgctg
     2761 gaagcctatg cgcgcagcct ctggccggac cgccgcgggc cgaaccgggg cgacgcggcc
     2821 ccgagcagca ccagcggcat ccacctggac atccacagct acagcgagct ggtcctctgg
     2881 ccctggggcg acaccggcca gcccgcgccc aatggcacgg cgctgcag
//
LOCUS       DATIHC010000821         4432 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_22092, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000821 DATIHC010000000
VERSION     DATIHC010000821.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4432)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4432)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4432
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22092"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..228
                     /locus_tag="VLF16_13730"
     CDS             <1..228
                     /locus_tag="VLF16_13730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008010530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71984.1"
                     /translation="EVERLGIDYPVAIDNDYRIWNAFANRYWPAHYFVDAEGRVRYLH
                     IGEGGHAEQERVITALLAEARRTAEPVATAR"
     gene            complement(236..1261)
                     /locus_tag="VLF16_13735"
     CDS             complement(236..1261)
                     /locus_tag="VLF16_13735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020294300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX71985.1"
                     /translation="MLDVSESLTPRSTLAQRWPLWLPPLIAAVYPYLLDAFHVLVKGE
                     GHITPAAALLLLAAFAVPALGLHLACRASGRGAEQTRARRLGLLLVATPTLYCFVGVN
                     LYMLGVAPAEGWIWTLAWLALALLAAVATPAEHDAHTERRTPTLLRVAHGVSGALVTL
                     FIAFHLFNHLLSLTGPEVHAALMERGRQVYRAPLVEPLLVIALLFQVVTGLQLAWRWS
                     TRGGDFQRMFQLASGVFLAVFILGHLNAVFVFARLWAGIETDWAFATGAPTGLIMDPW
                     SIRLLPHYALGVFFVLAHLGSGLRGVLLAHGVARRTADRLWWLGAGAAALVSLAIMLG
                     MTGLRLG"
     gene            complement(1324..2532)
                     /locus_tag="VLF16_13740"
     CDS             complement(1324..2532)
                     /locus_tag="VLF16_13740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019726398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSX71986.1"
                     /translation="MNQQQILIIGAGFGGLWSALSAVRLLDQHQRLDVAVTVLAPQAE
                     LRVRPRFYESDISTTVAPLGELFDAVGVNFIQGSATGIDADGKRVSYRDAHGEQRELS
                     FDRLILAAGSHVARPAAVPGIVHAFDVDSYESAQKLGDHLQGLRVLPDSPERNTVVVV
                     GGGFTGIETATEMPARLREVLGERADIRVVVVDSGAAVGAAMGEAMAEVIAQASDELG
                     VTWRLGSAVQSVDANGVVLADGERIDARTVVWAVGVKASALTEQVAGERDRQGRLHVD
                     RTLKVLGQESIFATGDTAYAATDDQGNHALMTCQHAIALGRSAGNNAAADLLGVAPIP
                     YSQPKYVTCLDLGAWGAVYTEGWERKVVLTRAEGKELKTQINTQWIYPPVAVRETALA
                     AADPLIPVVA"
     gene            2659..4170
                     /locus_tag="VLF16_13745"
     CDS             2659..4170
                     /locus_tag="VLF16_13745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012018585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HSX71987.1"
                     /translation="MPLDKRPSLIVSLPLGAPAPGVSLQAWLYQSLRESVLAGRLPAG
                     AKLPSTRALAEHYAMARGTVQAAYQQLLSEGYLQARVGSGTHVSEVLPDTTLHAGYVQ
                     RKVVPNVEPQRESPATPWVERLAAIRPVFGRRAVTPGSRPFFPHRGDVSAFPVDLWRK
                     LHIQQLRSSRLSTLLDSDPSGLPALREAIAGYLAIARGVQVSAERILVLSSVQQGIDL
                     CLRLLVPQGEQIWLEDPAYPGARQLMQVSGCSWVNVPVDKHGLRVEEGIRLAPKARLA
                     YVTPSRQLPLGGELSPARRLALLRWAAESGAYIIEDDYDSEYRFIAKPIPALRSLPAA
                     DSSVILAGTFSKLMFPAVRLAYLVLPPQLVEPFTRASALTARHANSLSQAVLASFIAD
                     GHFDRHVRRMRKLYASRADALSEAAQRHWRGLIEVPPIRAGLDIACRLQLDDEASACA
                     ALQDQGIDLLPLSAYCHAPRPPGLVIGFAPYAESAIFEAAQQVRKILEALPRR"
BASE COUNT          660 a         1526 c         1612 g          634 t
ORIGIN      
        1 gaggtcgagc gactcggcat cgactacccg gtggccatcg acaacgacta ccggatctgg
       61 aacgccttcg ccaaccgcta ctggccggcg cactactttg tcgatgccga gggcagggtg
      121 cgttacctgc acatcggcga gggcggccac gccgagcagg agcgggtgat caccgcgctg
      181 ctggccgagg cccggcgcac ggccgagccc gtggccacgg cgcgctgagg cgggctcagc
      241 ccaggcgcag gccggtcatg ccgagcatga tcgccagcga caccagggcg gcggcgccgg
      301 cgcccagcca ccagagccgg tcggcggtgc gccgcgccac gccatgggcc agcagcaccc
      361 cccgcaggcc ggagccgagg tgggcgagca cgaagaacac gcccagggcg tagtgcggca
      421 gcaggcggat gctccacggg tccatgatca gcccggtggg tgcgccggtg gcaaaggccc
      481 agtcggtctc gatgccggcc cagaggcggg cgaacacgaa caccgcgttc aagtggccga
      541 ggatgaacac cgccaggaac accccggagg cgagctggaa catgcgctgg aagtcgccgc
      601 cgcgggtgct ccagcgccag gccagctgca ggccggtgac cacctggaag agcagggcga
      661 tcaccagcag cggctcgacc agcggcgcgc ggtagacctg gcggccgcgc tccatcagcg
      721 ccgcgtgcac ttccggcccg gtcaggctga gcaggtgatt gaacaggtgg aaggcgatga
      781 acagcgtcac cagcgcgccg gacacgccat gggccacgcg cagcagcgtc ggcgtccggc
      841 gctcggtgtg cgcgtcatgt tcggcgggcg tggcgacggc tgccagcagc gccagcgcca
      901 gccaggcgag ggtccagatc cagccctcgg ccggggcgac gccgagcatg tacaggttga
      961 cgccgacgaa gcagtacagg gtcggcgtcg ccaccagcag caggcccagg cgccgcgcgc
     1021 gggtctgctc ggcgccacgg ccgctggcgc ggcaggccag atgcaggccc agcgccggta
     1081 cggcgaaggc ggccagcaac agcagcgcgg ccgcgggggt gatatgtccc tcgcccttga
     1141 ccagcacatg gaaggcgtcg agcaggtagg ggtagacggc ggcgatcagc ggcggcaacc
     1201 agagcggcca gcgctgcgcc agggtagagc gcggggtgag gctctcggat acgtcgagca
     1261 tggtgcgctt ccttgcaggg aaaaacccgg ggatcgaccc ccgggtttcg cgcgggcgat
     1321 ggctcaggcc accacgggga tcagcgggtc ggcggcggcc agggcggttt cgcgcacggc
     1381 gaccggcggg tagatccact gggtgttgat ctgggtcttc agctccttgc cctcggcgcg
     1441 ggtgagcacc accttgcgct cccagccttc ggtgtacacc gcgccccagg cgccgaggtc
     1501 gaggcaggtc acgtacttcg gctggctgta ggggataggg gccacgccga gcaggtcggc
     1561 ggcggcgttg ttgccggccg agcggcccag ggcgatggcg tgctggcagg tcatcagcgc
     1621 gtggttgccc tggtcgtcgg tggccgcgta ggcggtgtcg ccggtggcga agatgctctc
     1681 ctggccgagc accttgaggg tgcggtcgac gtgcaggcgg ccctggcggt cgcgctcacc
     1741 ggcgacctgc tcggtcagcg ccgaggcttt cacgcccacg gcccagacca cggttctggc
     1801 atcgatgcgc tcgccgtcgg ccagcaccac gccgttggca tccaccgact gcacggccga
     1861 gcccaggcgc caggtaacgc ccagctcgtc gctggcctgg gcgatcactt cggccatggc
     1921 ctcgcccatg gcggcgccga cggccgcgcc ggagtcgacc accacgacgc ggatgtcggc
     1981 ccgctcgccc agtacttcac gcaggcgcgc cggcatctcg gtcgcggtct cgataccggt
     2041 gaagccaccg ccaaccacca ccacggtgtt gcgctcgggg ctgtcgggca gcacgcgcag
     2101 gccctgcagg tggtcgccga gcttctgcgc cgactcgtaa ctgtcgacgt cgaaggcgtg
     2161 gacgatgcca gggaccgcgg cggggcgggc gacatggctg ccggcggcga ggatcaggcg
     2221 gtcgaaggac agctcgcgct gctcgccgtg ggcgtcgcgg tagctcacgc gcttgccgtc
     2281 ggcgtcgatg ccggtggcac tgccctggat gaagttcacg cccaccgcat cgaacagctc
     2341 gcccagcggg gcgacggtgg tggagatgtc gctttcgtag aagcgtggac gcacgcgcag
     2401 ctcggcctgt ggggcgagca cggtgacggc gacgtcgagg cgctggtgct ggtcgagcag
     2461 gcgaacggcg ctgagggcac tccagaggcc accgaagccg gcgccgatga tgaggatctg
     2521 ttgttggttc atggctcact ccgaatcgaa aaaaggctgt ggatggatgg gggtaggacg
     2581 ggagtgagtg tgcaaccgat gtggatcatg gtattgatcc aatatcttcg taacgcattg
     2641 gtccactttg ggtgtcgcat gccgctcgat aaacgtccct cgctgatcgt ctccctgccg
     2701 ctcggtgcac ccgcgccggg cgtgagcctg caggcctggc tgtaccagag cctgcgcgaa
     2761 tcggtgctgg ccgggcgcct gccggccggg gccaagctgc ccagcacccg ggccctggcc
     2821 gagcactacg caatggcccg cggcacggtg caggcggcct atcagcagct gttgtccgag
     2881 gggtatctgc aggcgcgggt gggcagtggc acccatgtca gcgaggtcct gccggacacc
     2941 acgcttcatg cgggctacgt gcagcggaaa gtcgtgccca acgtggagcc gcagcgcgaa
     3001 tcgccggcga cgccctgggt cgagcggctg gcagcgatcc gcccggtgtt cgggcggcgc
     3061 gccgtcacgc cgggcagccg gccgttcttt ccccatcgtg gcgacgtcag cgcctttccc
     3121 gtcgacctgt ggcgcaagct gcatatccag cagctgcgct cgtcgcgcct gtcgaccctg
     3181 ctcgattccg atccctccgg cctgccggcg ctgcgcgagg ccatcgccgg ctacctggcc
     3241 atcgcccgcg gcgtgcaggt gtcggcggag cgcatcctgg tgctcagcag cgtgcagcag
     3301 ggcatcgacc tgtgcctgcg cctgctggtg ccgcagggcg aacagatctg gctggaggac
     3361 ccggcctacc cgggcgcgcg gcagctgatg caggtgtccg gttgcagttg ggtgaatgtg
     3421 ccggtggaca agcacggcct gcgcgtggag gagggcatcc gcctggcgcc gaaggcgcgg
     3481 ctggcctacg tgacgccctc gcgccagttg ccactgggcg gcgagctgtc gccggcgcgc
     3541 cgcctggctc tcctgcgctg ggccgccgag agcggcgcct acatcatcga ggacgactac
     3601 gacagcgagt accgcttcat cgccaaaccg attccggcgc tgcgctcgct gccggcggcg
     3661 gacagctcgg tgatcctcgc cggcaccttc agcaagctga tgttcccggc cgtgcgcctc
     3721 gcctatctgg tgctgccgcc gcagctggtg gagcccttca cccgcgcctc ggcattgacc
     3781 gcgcggcatg ccaacagcct cagccaggcg gtgctggcgt cgttcatcgc cgacggccat
     3841 ttcgaccgcc acgtgcggcg tatgcgcaag ctctatgcct cgcgggccga tgcgctgagc
     3901 gaggcggcgc agcggcactg gcgcgggctg atcgaggtgc cgccgatccg cgccggtctg
     3961 gacatcgcct gccgcctgca actggacgac gaggcgagtg cctgcgcggc cctgcaggac
     4021 cagggcatcg acctgctgcc gctgtccgcc tactgccacg caccgcggcc gccggggctg
     4081 gtgatcggct tcgcgccgta cgcggagagt gcgatcttcg aggcggcgca gcaggtgcgg
     4141 aaaatcctcg aggcgttgcc gcggcgctga tgcccggccg cagatcccag cccagatgaa
     4201 cccgctcaaa tgcgccagcc ctccaacctc ttctgggcac cgggcgagcg ggccatactg
     4261 gcccggcttc gccacgccgc cctgacacct accggatgta gatgaccatg agccaatctc
     4321 tcgacccgtc ccaacgttcg tcccgcggcc cgctgcgcgt cctgcggctc atcgccagcc
     4381 cgcggggcgc cgagtccgag agcctgcgcc tgtcgcagca gatcctcaag gg
//
LOCUS       DATIHC010000822         1569 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37357, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000822 DATIHC010000000
VERSION     DATIHC010000822.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1569
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37357"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1466
                     /locus_tag="VLF16_13750"
     CDS             <1..1466
                     /locus_tag="VLF16_13750"
                     /inference="COORDINATES: protein motif:HMM:NF026115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HSX71988.1"
                     /translation="INLIENVRAFDWVALDRGELTLQVQAERVAENHYRAELHNAGSL
                     VMSAEFRFAAALSGKPLAELQGGIGYRWPDHELYSTGMFHGPLFQSIAGIQAWAEEGI
                     DARLASCSTHGFVHDGESCALVLNPVLLDALGQLAAYWLAQQVGTDFNSFPSHIARIE
                     IHAQAPADLSGAWLRGRQRPVDAANGGLDAPRTWTFDCLHEGRLLLHASGFANLFFPV
                     PNAFYQLRREPMNGWLGAPLASAVPQALLWQLEQLPEDFCKQSAAIFLRILAHAVLAA
                     DEREEWEAVRQTRRAREWLHGRLCLKEATRYFIYQQTGELLCPADVSVHHDALGAPFV
                     DGWWNDHWLAAPAVSLSHDRDGCVAALVPAGAVGVDAERLDRLQRPELVAGSFTAHEQ
                     QVLAAVDPAWHGELTLRTWCAKEAAAKYLGCGLRGAPQDFEVRFLETGDLAEVIFAGD
                     ASLAPACVNVAFEVQGDRLIALAGAEWEVTEYGVANG"
BASE COUNT          239 a          542 c          539 g          249 t
ORIGIN      
        1 cgatcaacct gatcgagaac gtccgcgcct tcgactgggt ggccctggat cgcggcgagc
       61 tgaccctgca ggtgcaggcc gaacgtgtcg ccgagaacca ctaccgggcc gagctgcaca
      121 acgccggcag cctggtgatg agcgccgagt tccgcttcgc cgcagcgctc agcggcaagc
      181 cgctggccga gctgcagggc ggtatcggct accgctggcc ggatcacgag ctgtacagca
      241 ccggcatgtt ccacggcccg ctgttccaga gcatcgccgg gatccaagcc tgggcggagg
      301 agggcatcga tgcccggctc gccagctgct ccacccacgg cttcgtgcat gacggcgagt
      361 cctgcgccct ggtgctcaac ccggtgctgc tggacgccct cggccagctg gccgcctatt
      421 ggctggcgca gcaggtcggt accgatttca acagcttccc ctcgcatatc gcccgcatcg
      481 aaattcatgc acaggcgccg gccgacctgt ccggcgcctg gctgcggggt cgccagcgtc
      541 cggtcgatgc ggccaatggc ggcctggatg caccgcgcac ctggaccttc gactgcctgc
      601 acgaaggccg cctgctgctg catgccagcg gtttcgccaa tctgttcttc ccggtaccca
      661 acgccttcta ccagctgcgt cgcgagccca tgaacggctg gctcggcgcg cctctggcca
      721 gcgcggtacc gcaagcgctg ctgtggcagt tggagcagct gcccgaggac ttctgcaagc
      781 agtcggcggc gatcttcctg cgcatcctcg cccacgccgt actggccgcg gacgagcgcg
      841 aggaatggga agccgtgcgc cagacccgcc gcgcccgcga gtggctgcat ggccgcctgt
      901 gcctgaagga agcgacccgc tacttcatct accagcagac cggcgagctg ctctgcccgg
      961 cagacgtgag cgtgcatcac gacgcgctgg gcgcgccctt cgtcgacggt tggtggaacg
     1021 accattggct ggccgcgccg gcggtgtcgc tgagccatga ccgcgatggc tgcgtggccg
     1081 ccctggtgcc cgccggcgcc gtgggtgtgg atgccgagcg cctggatcgt ctgcaacgtc
     1141 cggagctggt ggccggctcg ttcaccgccc atgagcagca ggtgctggcc gcggtcgatc
     1201 cggcctggca tggcgagctg accctgcgca cctggtgcgc caaggaggcc gccgccaagt
     1261 acctgggctg cggcctgcgc ggtgcgccgc aggatttcga ggtgcgtttc ctcgagaccg
     1321 gcgacctggc cgaagtgatt ttcgccggag acgccagcct ggcgccggcc tgcgtgaacg
     1381 tggccttcga ggtgcagggc gatcggctga tcgcgctggc cggggccgaa tgggaagtaa
     1441 cggaatacgg agtggccaat ggctgaaagc aagagcgcaa tcgagcaaac cctgatccac
     1501 atcgctgccg acctgaccca ggactggggc atcgagctgg accagccgct gagcgccgag
     1561 acccggctg
//
LOCUS       DATIHC010000823         2084 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_44354, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000823 DATIHC010000000
VERSION     DATIHC010000823.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2084
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44354"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..91
                     /locus_tag="VLF16_13755"
     CDS             <1..91
                     /locus_tag="VLF16_13755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_function: GO:0051499 - D-aminoacyl-tRNA deacylase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="D-aminoacyl-tRNA deacylase"
                     /protein_id="HSX71989.1"
                     /translation="YPQVATGRFGADMQVHLVNDGPVTFLLET"
     gene            complement(152..574)
                     /locus_tag="VLF16_13760"
     CDS             complement(152..574)
                     /locus_tag="VLF16_13760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003453242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0158 family protein"
                     /protein_id="HSX71990.1"
                     /translation="MRPLTIDLAELAFALNSEGLDHYLDLLSGKVLLMPEEDADPELE
                     ALLRDEPERFLAIEPLDAQAGLALMREFLAEVIHPHAYAELEEALEGRRAARTFVHVL
                     MQYPALLEAWQQFEAERLRELALDWLEEHELQPARPLH"
     gene            complement(629..>2084)
                     /locus_tag="VLF16_13765"
     CDS             complement(629..>2084)
                     /locus_tag="VLF16_13765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003438725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSX71991.1"
                     /translation="NDIMLDDATRLEQFRQLSKLGLSVQQARFQVRGYTYSSDPSLQQ
                     AAFDAVDQALKGLQELGATIGSDDEDLLAAEKALQAYRAAIAEFGNAMASSTEQFEQM
                     RQHGDRVLKVSQTLFERQSAKRAKESAQARTLLAGASVLALLIGLGAALIITRLIVRP
                     LQHTLTAAERIAAGDLSQDIRITREDEMGQLQRSMQTMTVSLRELVGHIRDGVTQIAS
                     AAEQLSAVTEQTSAGVNSQKVETDQVATAMNEMTATVHEVARNAEEASHAASAADQQA
                     REGETAVSEAVEQMDRLAGEVGRSNEAVTHLKAESDKIGSVLDVIKTVAEQTNLLALN
                     AAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEIESLIAALQHGTQQAAARMDSSR
                     ALTESTVELTRRAGLQLGAIAQSVSSIQAMNQQIATAAEEQTAVAEEINRSVINVRDI
                     SEQTASASEETAASSIELARLGNELQLLVSRFRV"
BASE COUNT          249 a          705 c          746 g          384 t
ORIGIN      
        1 gtacccgcag gtggccaccg gccgtttcgg tgccgacatg caggtgcatc tggtcaatga
       61 tggtccggtg accttcctgc tcgaaacctg agccgcggaa ccacgccggc ccggcgcttc
      121 acgccacttt cgcgttcagg tcgattgccg ctcagtgcag cggtcgcgcc ggctgcagct
      181 cgtgttcttc cagccagtcc agtgccagtt cgcgcagacg ctcggcctcg aactgctgcc
      241 aggcttccag cagggccggg tactgcatca gcacatgcac gaaggtgcgc gccgcgcgcc
      301 ggccttccag cgcctcttcc agctctgcgt aggcatgcgg gtggatcacc tcggcgagga
      361 actcgcgcat cagcgccagg ccggcctgcg cgtccagcgg ctcgatggcc aggaagcgct
      421 ccggctcgtc gcgcagcagg gcttccagtt cggggtcggc atcttcttcc ggcatcagca
      481 gcaccttgcc gctgagcagg tcgaggtaat ggtcgaggcc ttcgctgtta agggcgaagg
      541 ccagttcggc gaggtcgatg gtcagtgggc gcatggctcg gggcgggcag gggagtgagc
      601 ggcccatact acgccccgcg ccgcgggctc acacgcggaa gcggctgacc agcagttgca
      661 gctcgttgcc gagacgcgcc agctcgatgc tcgaggcggc ggtttcctcg ctggccgagg
      721 cggtctgctc ggagatgtcg cgcacgttga tcacgctgcg gttgatctcc tcggcgaccg
      781 cggtctgctc ttcggccgcg gtggcgatct gctggttcat cgcctggatg gacgacaccg
      841 actgggcgat ggcgcccagt tgcaggccgg cgcggcgggt cagctcgacg gtgctctcgg
      901 tcagcgcgcg gctgctgtcc atgcgcgccg cggcctgctg ggtgccgtgc tgcagggcgg
      961 cgatcagcga ctcgatctcc tcggtggact tctgcgtgcg ctgggccagg ccgcgcacct
     1021 cgtcggcgac cacggcgaaa ccgcgcccgg cctcgccggc tcgggccgcc tcgatggccg
     1081 cgttgagcgc cagcagattg gtctgctcgg ccaccgtctt gatcacgtcc agcacgctgc
     1141 cgatcttgtc gctctcggcc ttgagatggg tcaccgcctc gttggagcgg cccacttcgc
     1201 cggccagccg gtccatttgc tcgaccgcct cgctgaccgc ggtctcgcct tcccgggcct
     1261 gctggtcggc ggcgctggcg gcgtgggagg cctcctcggc gttgcgtgcg acctcgtgca
     1321 cggtggcggt catctcgttc atcgcggtgg ccacctggtc ggtctcgacc ttctggctgt
     1381 tgaccccggc gctggtctgc tcggtcacgg ccgacagctg ctcggcggcg ctggcgatct
     1441 gggtgacgcc gtcgcgaatg tggccgacca gctcgcgcag gctgacggtc atggtctgca
     1501 tgctgcgctg cagctggccc atctcgtcct cgcgggtgat gcggatgtcc tggctgaggt
     1561 cgccggcggc gatgcgctcg gcggccgtca gggtgtgctg cagcgggcgc acgatcaggc
     1621 gcgtgatgat cagcgcggcg cccaggccga tcagcaaagc cagcaccgag gcgccggcca
     1681 gcagggtgcg cgcctgggcc gattccttgg cgcgcttggc cgactgccgt tcgaacaggg
     1741 tctggctgac cttgagcacg cggtcgccat gctggcgcat ctgctcgaac tgctcggtgc
     1801 tgctggccat ggcattgccg aactcggcga tggcggcgcg gtaggcctgc agggccttct
     1861 ccgcggcgag caggtcttcg tcgtcgctgc cgatggtcgc gcccagctcc tgcaggccct
     1921 tgagggcctg gtccaccgca tcgaaggcgg cctgctgcag gctcgggtcg ctgctgtagg
     1981 tgtagccgcg cacctggaag cgcgcctgct gcacgctcag gcccagtttg ctgagctggc
     2041 ggaactgctc gaggcgggtg gcgtcgtcga gcatgatgtc gttg
//
LOCUS       DATIHC010000824         2911 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_37365, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000824 DATIHC010000000
VERSION     DATIHC010000824.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2911
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37365"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..356
                     /locus_tag="VLF16_13770"
     CDS             <1..356
                     /locus_tag="VLF16_13770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016567560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Maf family protein"
                     /protein_id="HSX71992.1"
                     /translation="EQILGKPHDFNRARSQLLAASGTRVTFLTGLALLNSASGECQVD
                     VVPFTVHFRELDEAQVTRYLQAEQPYDCAGSFKAEGLGVSLFRATEGEDGTSLVGLPL
                     IRLVQMLEREGVAIP"
     gene            complement(382..1341)
                     /gene="sppA"
                     /locus_tag="VLF16_13775"
     CDS             complement(382..1341)
                     /gene="sppA"
                     /locus_tag="VLF16_13775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011913736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HSX71993.1"
                     /translation="MSDEVRDDKAWKLLERTLQASVIEQRRARRWGIFFKLLAFIYLF
                     GALALFSPSLKLGKTASTAEHHTALIEVRGMIMADEQASADNIVSSLRAAFEDEKTKG
                     IVLRINSPGGSPVQSGYVYDEIKRLRGEHPDIKVYAVISDLGASGAYYIASAADQIYA
                     DKASLVGSIGVTAATFGFVGAMEKVGVDRRVYTSGEHKAFLDPFQPPKEEETRFWQGV
                     LETTHKQFIDSVKKGRGERLKVDQHPELFSGLIWSGEQALELGLVDALGGSSYVAREV
                     IGAKDIVDFTREENPFDRFTKKLGASVAERLALWMGFQGPTLR"
     gene            complement(1334..2026)
                     /locus_tag="VLF16_13780"
     CDS             complement(1334..2026)
                     /locus_tag="VLF16_13780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HSX71994.1"
                     /translation="MPDYQLLIFDWDGTLVDSIGRIVESMHRAAEACGLPQLSDEAIK
                     GIIGLGLPEAIQTLYPELRETPLIERFRIGYGEHYMTLESEPSAFFPGVKESLAAFRE
                     QGYRLAVATGKSRRGLHRVLAGHGWLDYFDVTRCADETASKPDPLMLREIMGHCAVAP
                     ERALMVGDSVFDLMMAKNAGVDSVAVGFGAQPLDGLRLHGPRLAINEFSELRAWLEGR
                     VSANTVEVGEYV"
     gene            complement(2019..>2911)
                     /gene="rluC"
                     /locus_tag="VLF16_13785"
     CDS             complement(2019..>2911)
                     /gene="rluC"
                     /locus_tag="VLF16_13785"
                     /EC_number="5.4.99.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="23S rRNA pseudouridine(955/2504/2580) synthase
                     RluC"
                     /protein_id="HSX71995.1"
                     /translation="GQRIDNFLRTQLKGVPKTLIYRILRKGEVRVNRGRIKPEYKLQA
                     GDVVRVPPLRLAERDEPAPLAQSLLERLEAAIVYEDKALIVLNKPAGIAVHGGSGLNY
                     GVIEAFRQLRPDAKDIELVHRLDRDTSGLLMIAKKRSMLRHLHEALRGDGVDKRYMAL
                     VRGSWPTSKKKVAAPLLKNNLRSGERMVEVNPEGKEALTEFRVLRRFGEFATLVEASP
                     ITGRTHQIRVHAKHAGHSIAGDPKYGDEDFTREIRELGGKRLFLHAYQLKIQLPDGQS
                     LELEAEVDSMWEQTLERLGA"
BASE COUNT          521 a          979 c          885 g          526 t
ORIGIN      
        1 gcgagcagat cctcggcaaa ccccatgatt tcaaccgcgc ccgcagccag ttattggccg
       61 ccagcggtac ccgcgtgacc tttctcaccg gcctggccct gctcaacagc gccagcggcg
      121 aatgccaggt ggacgtagtg cccttcaccg tgcatttccg cgaactggac gaggcgcagg
      181 tcacccgcta tctgcaggcg gagcagccct acgactgcgc cggcagcttc aaggccgagg
      241 gactgggcgt gagcctgttc cgagccaccg agggcgaaga cggcaccagc ttggtcggcc
      301 tgccactgat cagactggtg cagatgctgg aaagggaagg cgtcgccatc ccctgacccc
      361 tatataagga agcgcccgct atcagcgcag agtcggcccc tggaagccca tccacagcgc
      421 caggcgttcc gccacgctgg cgccgagctt cttggtgaag cggtcgaacg gattctcttc
      481 acgggtgaag tcgacgatat ccttggcacc gatcacttcg cgcgccacgt agctgctgcc
      541 acccagcgca tccaccagcc ccagctcaag cgcctgttcg ccggaccaga tcaggccgga
      601 gaatagctca ggatgctgat cgaccttcag gcgctcgccg cgacccttct tcacgctgtc
      661 gatgaattgc ttgtgagtgg tctccagcac gccctgccag aagcgagtct cctcttcttt
      721 cggcggctga aagggatcga ggaaggcctt gtgctcgccg gaggtataga cgcgacggtc
      781 tacgccgacc ttctccatcg ctccgacgaa gccgaaggtg gccgcagtga caccaatgga
      841 gcccactagg ctggccttgt cggcgtagat ctggtcggcg gcgctggcga tgtagtaggc
      901 gcccgacgct cccaggtcgc tgatcaccgc gtagactttg atgtccggat gctcgccgcg
      961 caggcgcttg atctcgtcat acacgtaacc ggactgtacc gggctgccgc ccggactgtt
     1021 gatacgcagg acgatgccct tggtcttctc gtcttcgaag gccgcgcgca ggctgctgac
     1081 gatattgtcg gcactggcct gctcgtcggc catgatcatg ccgcgcacct cgatcagcgc
     1141 cgtgtggtgc tccgccgtcg aggcagtctt gcccagcttc agcgacggag agaacagcgc
     1201 cagggcgccg aacagataga tgaacgccaa cagcttgaag aagatgcccc agcggcgagc
     1261 ccggcgctgc tcgatcacac tggcctgcag cgttctttcc agcagtttcc aggccttatc
     1321 gtctcttact tcatcagaca tattcgccaa cctcgacagt gtttgcggac acgcgccctt
     1381 ccagccaggc gcgcagttcg gaaaattcgt tgattgccag acgcggcccg tgcaggcgaa
     1441 ggccgtccag tggctgcgcg ccgaagccca cggctaccga gtccacgccg gcatttttgg
     1501 ccatcatcaa gtcgaagaca gagtcgccaa ccatcagcgc ccgctccggc gccacggcgc
     1561 agtgccccat gatctcgcgc agcatgagcg gatcgggctt gctggccgtc tcgtccgcgc
     1621 aacgggtgac gtcgaaataa tccagccagc catgccctgc cagaactcga tgcaggccac
     1681 ggcggctctt gccggtcgcc acggccaggc gataaccctg ctcacggaac gccgccagcg
     1741 actccttaac gccggggaaa aaggccgaag gctcgctctc cagagtcatg tagtgctcgc
     1801 cgtagccaat gcggaaacgt tcgatcagcg gcgtttcccg cagttccgga tagagcgtct
     1861 ggatcgcctc gggcaggccg agaccgatga tgcccttgat cgcctcgtcg ctcagttgcg
     1921 gcaggccgca ggcctcggcg gcacggtgca tggactcgac gatgcggccg atcgaatcga
     1981 ccagcgtgcc gtcccagtcg aagatcagca gttgatagtc aggcaccgag acgctccagg
     2041 gtctgctccc acatgctgtc cacctctgcc tccaactcaa gagactgacc atccggcagc
     2101 tggatcttga gctgataggc atgcaggaac aggcgcttgc cgcccagctc gcgaatctcg
     2161 cgagtgaagt cctcgtcgcc gtatttggga tcgccggcga tggagtgccc ggcgtgcttg
     2221 gcatgcacgc ggatctgatg ggtacgcccg gtgatcggac tggcctcgac cagggtggcg
     2281 aactcaccga agcggcgcag cacacggaac tcggtgagcg cctccttgcc ctcgggattg
     2341 acttcgacca tgcgttcgcc cgagcgcagg ttgttcttca acagaggcgc cgcgaccttc
     2401 ttcttcgagg tcggccaact gccgcgcacc agggccatgt agcgcttgtc cacgccatcg
     2461 ccgcgcagcg cctcgtgcag gtggcgcagc atgctgcgct tcttggcgat catcagcagg
     2521 cccgaggtgt cgcgatcgag gcgatgaacc agctcgatat ccttggcatc cgggcgcagc
     2581 tgacggaacg cttcgatcac cccgtaattc agaccgctgc cgccatgcac ggcgatgccg
     2641 gccggcttgt tcagcacgat caacgccttg tcctcgtaga cgatggccgc ctccagccgc
     2701 tccagtaagc tctgcgccag cggcgccggc tcgtcacgct cggccaggcg cagcggcggc
     2761 acccgcacga catcgccggc ctgcagcttg tattcgggct tgattcgacc cctgttcacc
     2821 cgcacctcgc ccttgcgcag aatgcggtag atgagcgtct tcggcacgcc cttgagctgg
     2881 gtacggagga aattgtcgat gcgctggccg g
//
LOCUS       DATIHC010000825         3597 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_38440, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000825 DATIHC010000000
VERSION     DATIHC010000825.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3597
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38440"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..594
                     /locus_tag="VLF16_13790"
     CDS             <1..594
                     /locus_tag="VLF16_13790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015477372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HSX71996.1"
                     /translation="RTPGLTASKRGDALLKLLSPLREQTGDLRRYCGYYFEYSNCMSV
                     PGYVLLSLVHLWEEDGDFLFERQERQERSASADVQAEDWVRCRYLGAAFQLQDRLFLM
                     DYESLTLNEMSQTILIPSYKSRITRLNGLKTGVSSGDRRNPACTRVVWEYLGPETNRI
                     SAYRQVRLYRPDDARIDEDVRQRLNVAPLKDGLFEIE"
     gene            complement(724..1395)
                     /locus_tag="VLF16_13795"
     CDS             complement(724..1395)
                     /locus_tag="VLF16_13795"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011920462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HSX71997.1"
                     /translation="MSADVSQWQPRPFPPHDPLQGRFIRLEPLDTARHGDDLWQALQG
                     PDPALWDYLPYGPFTERTTFDAWLAANAASRDPQFYAVVEQAGGRALGLLAYLRITPK
                     DGCIELGHVAFGGALQRTPGATEAVFLLARNAFDGLGYRRFEWKCNSRNARSRRAAER
                     FGFSYEGLFRQHMVIKGENRDTAWYSIIDGEWPERREAFQRWLAADNFDAEGRQKQRL
                     EELRG"
     gene            complement(1392..1835)
                     /locus_tag="VLF16_13800"
     CDS             complement(1392..1835)
                     /locus_tag="VLF16_13800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014851159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSX71998.1"
                     /translation="MPDIRPITAADHAAWLPLWQSYQRFYNATIADETSALIWQRFLD
                     PAEPMHAALAWRDGEAVGLVHSIYHRSCWTTGDYCYLQDLYVAEHIRGGGIGRALIEH
                     VYAEAAAAGASRVHWLTQETNYLGRMLYDRIADRSGFIQYRKLLP"
     gene            complement(1918..2538)
                     /locus_tag="VLF16_13805"
     CDS             complement(1918..2538)
                     /locus_tag="VLF16_13805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013713220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding negative transcriptional regulator"
                     /protein_id="HSX71999.1"
                     /translation="MYTPASFRQDDLAALHAQMRASPFALLTSVGSEGVQASHLPLLL
                     EPDEGEFGILYGHFARANPHWRELQGGTEALAVFSGPDAYISPGWYPAKAEHSKVVPT
                     WNYIAVHARGPVELIEDPERLLQIVSRLSDQHESGRAQPWAVSDAPRDYIDTMLRAIV
                     GFALPIRRLDGKWKLGQNRPAADQAGVRDGLASSSPRDRELAAHMT"
     gene            2627..>3597
                     /locus_tag="VLF16_13810"
     CDS             2627..>3597
                     /locus_tag="VLF16_13810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013713221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HSX72000.1"
                     /translation="MSATPPLPVDLSGIRLDPGQGLARQLYQALRERILDGRLAGRTR
                     LPASRDLAVLLNISRNTVTRAFDQLYAEGYVEGRVGAGTYVADLAGERPAPLPPAPGP
                     APSVALQRLQQHHLPPPVTGAPRAFRIGVPAFDLFPFDIWARLQARFWRKPSAARLGY
                     GDPAGDATLRELVAAYLRSSRGLNCDAAQIVITCGAQQAISLCAQLLVQPGDRVAVEN
                     PGYRAAGHALSVAGAELCGVPVDQDGLDTAALGGIEGCRLAYVTPSHQYPSGVTLSLA
                     RRLELLEWAERQDGWIIEDDYDGEYRYSGTPLAPLAALDRQGRVLYVG"
BASE COUNT          524 a         1206 c         1298 g          569 t
ORIGIN      
        1 cgcactccgg gcctcacggc gagcaagcgc ggcgacgccc tgctcaagtt gctcagcccg
       61 ctgcgcgagc agaccggcga cctgcgccgc tactgcggct attactttga atattccaac
      121 tgcatgtcgg ttcctggcta cgtgctgctg tcgctggtgc acctgtggga ggaagacggc
      181 gacttcctgt tcgagcgcca ggaacgccag gagcgctcgg ccagcgcgga cgtgcaggcc
      241 gaggactggg tgcgttgccg ctacctcggc gccgccttcc agctgcagga ccggctgttc
      301 ctgatggact acgagtcgct caccctcaac gagatgagcc agaccatcct catccccagc
      361 tacaagagcc gcatcacccg cctcaacggc ctgaagaccg gcgtctccag cggcgaccgg
      421 cgcaacccgg cctgcacccg cgtggtgtgg gaatacctgg gcccggagac caaccgcatc
      481 agcgcctacc gccaggtgcg cctgtaccgc ccggacgatg cgcgcatcga cgaggacgtg
      541 cgccagcggc tgaacgtggc gccgctgaag gacgggttgt tcgagatcga gtagcgtggc
      601 taagagcctg ctcacaggct cgcgagctgg gcgcaacgta ctggcggccg ggacgcagtt
      661 aatgaggtgc aggcgagcgg cacgagcctg ctttaacgac gcccaacagc ctccaagcag
      721 gcttcagccg cgcagctcct ccaggcgctg cttctgccgt ccctcggcat cgaagttgtc
      781 cgccgccagc cagcgctgga aggcctcgcg gcgctcgggc cattcgccgt cgatgatgga
      841 gtaccaggcg gtgtcgcggt tctcgccctt gatcaccatg tgctggcgga acagcccctc
      901 gtagctgaag ccgaagcgtt cggcggcccg ccgggagcgg gcgtttctcg agttgcactt
      961 ccactcgaag cggcggtagc cgagtccgtc gaaagcgttg cgcgccagca ggaacaccgc
     1021 ctcggtggcg cccggcgtgc gctgcagggc accgccgaag gcgacgtggc cgagctcgat
     1081 gcagccatcc ttgggcgtga tgcgcaggta ggcgagcagg cccagggcgc ggccgccggc
     1141 ctgctcgacc acggcataga actgcgggtc gcggctggcg gcgttggcgg ccagccaggc
     1201 atcgaaggtc gtgcgctcgg tgaaggggcc gtagggcagg tagtcccaca gcgccgggtc
     1261 cgggccctgc agtgcctgcc agagatcgtc gccatggcgc gcggtatcca gcggctccag
     1321 gcgaatgaaa cgaccctgca gcgggtcatg gggcgggaag gggcgtggct gccactggct
     1381 cacgtcggcg ctcatggcag cagcttccgg tactggataa agccggagcg gtcggcgatg
     1441 cggtcgtaga gcatgcgccc caggtagttg gtttcctggg tcagccagtg cacgcgactg
     1501 gcgccggcgg cagccgcctc ggcgtagacg tgttcgatca gcgcgcgacc gatgccgccg
     1561 ccgcggatgt gctcggccac gtagaggtcc tgcagatagc agtagtcgcc ggtggtccag
     1621 cagctgcggt ggtagatgga gtgcaccagg cccacggcct cgccgtcgcg ccaggccagg
     1681 gcggcgtgca tcggctcggc cgggtcgagg aagcgctgcc agatgagggc gctggtctcg
     1741 tcggcaatcg tggcgttgta gaaacgctgg tagctctgcc agagcggcag ccaggcggcg
     1801 tggtcggcgg cggtgatggg gcggatatcg ggcatggttc ctccttgata tgcaaatgtg
     1861 ggggcttccc cctctcccca accctctccc tagcggggag agggaactaa gtgaggctca
     1921 ggtcatgtgc gccgccagtt cgcggtcacg ggggctggag ctggcgaggc cgtcgcgcac
     1981 gccggcctgg tcggcggccg ggcggttctg gccgagcttc cacttgccgt cgaggcggcg
     2041 gatcggcagg gcgaagccga cgatggcgcg cagcatggtg tcgatgtagt cgcgcggcgc
     2101 atcgctcacc gcccagggct gcgcgcggcc gctctcgtgt tggtcgctga ggcggctgac
     2161 gatctgcagc aggcgctccg gatcctcgat cagttcgacc gggccgcggg cgtgtacggc
     2221 gatgtagttc caggtcggca ccaccttgct gtgctcggcc ttggccgggt accaaccggg
     2281 gctgatgtag gcgtccgggc cggaaaatac cgccagcgcc tcggtgccac cctgcagctc
     2341 gcgccagtgc ggattggcgc gggcgaagtg gccgtagagg atgccgaatt cgccctcgtc
     2401 gggttccagc agtagcggca gatggctggc ctgcacgcct tcgctgccga cgctggtgag
     2461 cagggcgaac gggctggccc gcatctgcgc atgcagcgcg gcgaggtcgt cctggcggaa
     2521 ggaagcgggc gtgtacatgg gcagctcctg gcggaatggc ctcatgctag gcaggataat
     2581 ggcccgttgt aagagccatt tcctgcgact tcagtggagc caattcatgt ccgccacgcc
     2641 gccgctgccc gttgatctct ccggcatccg tctcgatccc ggtcagggtc tggcccgcca
     2701 gctctatcag gccctgcgcg aacgcatcct cgacggccgc ctggccgggc gcacgcgcct
     2761 gccggccagc cgcgacctgg cggtgctgtt gaacatctcg cgcaataccg tgacccgcgc
     2821 cttcgaccag ctgtatgccg agggctatgt cgagggccgc gtcggcgccg gcacctatgt
     2881 ggcggacctg gccggcgagc gtccggcgcc gctgcctccg gcgcccggac cggcgcccag
     2941 cgtggccttg cagcgcctgc agcagcacca tctgcctcca ccggtgacag gagcgccccg
     3001 cgcctttcgc atcggcgtgc cggccttcga cctgtttccc ttcgatatct gggcgcggct
     3061 gcaggcgcga ttctggcgca agccctcggc ggcgcgcttg ggctatggcg acccggcggg
     3121 cgatgcgacc ctgcgcgagc tggtggccgc ctacctgcgc agcagccgcg ggctgaattg
     3181 cgatgcggcg cagatcgtca tcacctgcgg cgcccagcag gccatcagcc tgtgcgccca
     3241 gctgctggtg cagcccggcg accgcgtggc cgtcgagaac cccggctacc gcgccgccgg
     3301 gcacgccctg tcggtggccg gcgccgagct gtgcggcgtg ccggtggatc aggacggcct
     3361 ggatacggcc gcgctgggcg gcatcgaggg ctgccggctg gcctacgtca ccccgtcgca
     3421 ccaatatccg agcggggtga cgctgtcgct ggcgcggcgc ctggaactgc tggaatgggc
     3481 cgagcgccag gacggctgga tcatcgagga cgactacgac ggcgagtacc gctacagcgg
     3541 cacgcccctg gccccgctgg cggcgctgga tcggcagggg cgggtgctgt acgtcgg
//
LOCUS       DATIHC010000826         3101 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17564, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000826 DATIHC010000000
VERSION     DATIHC010000826.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3101
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17564"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2217
                     /locus_tag="VLF16_13815"
     CDS             <1..2217
                     /locus_tag="VLF16_13815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003242391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate cyclase"
                     /protein_id="HSX72001.1"
                     /translation="TPLWWLVPTYEEANYHAFTHALLSKRFIRADEVLDLGHLARIPP
                     GEFIGAGMWQLFKGIDSPYKSVLKLLLTEVYASEHPRVECLSLRFKQAVFANRLDLDE
                     LDPYIVVYRRLEEYLSERGEPERLELIRRCLYLKVGKKLSVPPRHRAKSWQRLLFERL
                     TAEWQWSPRELAMLDSRSQWKVRQVSAERRALVNELTYSYRFLSQFARNEQTAIPLNS
                     RDLGVLGRRLYAAFERKAGKIEFINPGIAPDIAEDTLTLVQSPSPEAEGETQWALHHG
                     NLSAQEWRDFAPLKRARELIELLAWCHRNGVIDTSTRLSLHPGSSDLSEFELGSLLSS
                     LQQSVPLPLPPVDENALLQAAEPAEVLLLVNVGVDPLKAHSQLNVHLTTERTDSLGYS
                     GVRENLVLTLDQVSLNSWNELMVTRYDGPHALLDCLRDYLNALPADGRLPRLRVRCFC
                     RNRAQAIAQRVEELFQEALAGLTGAPRSRYLLQVQQHYHVLELLPGQVSHAALADLPS
                     LIEHLGEEQPAYSPLHLDRYALEGEDLALVLPLGRPLCIQVFYRIDGAQAELTVLDEY
                     NALWRQRLPFRDEQSLLTPLQRFLQSVLYRRNALLPLDAPLPPAALEVLYYEVLPAPP
                     QRAKHLERRAPPRAPVAHSFYDVQAIVEPADGGRVHVTLYCNHREFSELEYGATLFGA
                     VARHILAQRRGAERYPCYITDLDLSRILGDGQAQTIHYLRYKAELEGALNSALQSA"
     gene            complement(2227..3030)
                     /locus_tag="VLF16_13820"
     CDS             complement(2227..3030)
                     /locus_tag="VLF16_13820"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052689 - carboxylic ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipase family protein"
                     /protein_id="HSX72002.1"
                     /translation="MSSLPLYFPEHFSLDRALLCAQLVDQAYAQYRQWQTQDRPRRPQ
                     DFVWTPPDLPGWRFSQPIWSILSDLRFINESEPFGFAAANDQGETYLVLRGTESAQDW
                     LDDVDAQQAPWPWQEGGVGHVHAGFLKLYTSLRDLALAALDSLQPTGPLWACGHSLGC
                     ALSSMAVLDMRERWPDQALEHYNFASPRLAAPDFAAAYNSLGVTTFRVVNDSDLVPEV
                     PPGAVDGVLYQHLGLAVTFTASYAGVEANHSLEGSYLYALEHPQAPMNG"
BASE COUNT          498 a         1124 c         1030 g          449 t
ORIGIN      
        1 acgccgctgt ggtggctggt gccgacctac gaggaagcca actaccacgc gttcacccac
       61 gcactgctga gcaagcgctt catccgcgcc gacgaggtgc tggacctcgg ccacctggca
      121 cgcatcccgc cgggcgagtt catcggcgcc ggcatgtggc agctgttcaa gggcatcgac
      181 tcgccctaca agtcggtgct caagctgctg ctcaccgagg tctacgccag cgaacatccg
      241 cgggtcgagt gcctgagcct gcgcttcaag caggcggtgt tcgccaatcg cctggacctg
      301 gacgagctcg acccctacat cgtggtctac cgccgtctgg aggaatacct cagcgaacgc
      361 ggcgagccgg agcgcctgga gctgattcgc cgctgcctct acctcaaggt cggcaagaag
      421 ctcagcgtgc cgccgcggca ccgcgccaag agctggcagc gcctgctgtt cgagcgcctc
      481 accgccgagt ggcagtggag cccgcgcgaa ctggccatgc tcgacagccg cagccagtgg
      541 aaggtgcgcc aggtcagcgc cgaacgccgc gcactggtca acgagctgac ctacagctac
      601 cgcttcctct cccagttcgc ccgtaacgag cagaccgcca tcccgctcaa cagccgcgac
      661 ctcggcgtgc tcggccggcg cctgtacgcc gccttcgaac gcaaggccgg caagatcgaa
      721 ttcatcaacc cgggcatcgc cccggacatc gccgaggaca ccctgaccct ggtgcagagc
      781 cccagcccgg aggccgaagg cgagacccag tgggccctgc atcacggcaa tctgagcgcc
      841 caggaatggc gcgacttcgc cccgctcaag cgggcccggg agctgatcga actgctcgcc
      901 tggtgccacc gcaacggggt gatcgacacc agtacccggc tgtcgctgca ccccggcagc
      961 agcgacctca gcgaattcga gctgggcagc ctgctgagca gcctgcagca gagcgtgccg
     1021 ctgcccctgc cgccggtgga cgagaacgcc ctgctgcaag ccgccgagcc ggccgaggtg
     1081 ctgctgctgg tgaatgtcgg cgtcgacccg ctcaaggccc acagccagct caacgtgcac
     1141 ctgaccaccg agcgcaccga ctcgctgggc tattccggcg tgcgcgagaa cctggtgctg
     1201 accctcgatc aggtcagcct gaacagctgg aacgagctga tggtgacccg ctacgacggg
     1261 ccgcacgcac tgctcgactg cctgcgcgac tacctcaacg ccctgcccgc cgacggccgg
     1321 ctgccgcgcc tgcgggtgcg ctgtttctgc cgcaaccgcg cccaggccat cgcccagcgg
     1381 gtcgaggaac tgttccagga ggcgctcgcc ggcctgaccg gcgccccacg cagccgctac
     1441 ctgctgcagg tgcagcagca ctaccacgtg ctcgaactgc tgcccggcca ggtcagccac
     1501 gccgccctcg ccgacctgcc gagcctgatc gagcacctcg gtgaggaaca gcccgcctac
     1561 agcccgctgc atctggatcg ctatgcgctg gaaggcgagg acctggcgct ggtcctgccg
     1621 ctgggccggc cgctgtgcat ccaggtgttc taccgcatcg acggcgccca ggccgagctc
     1681 acggtgctgg acgaatacaa cgcgctgtgg cgccagcgcc tgccgttccg cgacgaacag
     1741 agcctgctga ccccgctgca gcgcttcctg cagtcggtgc tctaccggcg caacgccctg
     1801 ctgccgctgg acgctccctt gccgccggcc gcgctggaag tgctgtacta cgaggtgctg
     1861 ccggcgccgc cccagcgcgc caagcacctg gagcgccgcg cgccaccgcg ggctccggtc
     1921 gcgcattcct tctacgacgt gcaggccatc gtcgagccgg ccgacggcgg ccgggtccac
     1981 gtcaccctgt attgcaacca tcgcgaattc tcggagctgg aatacggcgc cacgctgttc
     2041 ggtgccgtgg cccggcacat cctggcccag cgccgcggcg ccgagcgcta cccctgctac
     2101 atcaccgacc tggacctgtc gcgcatcctc ggcgacggtc aggcgcagac catccactac
     2161 ctgcgctaca aggccgagct ggaaggcgcg ctgaacagcg ccctgcagag cgcctgattc
     2221 gccggctcag ccgttcatcg gcgcctgcgg gtgctccagg gcgtagaggt agctgccctc
     2281 caggctgtga ttggcctcga ccccggcgta gctggcggtg aaggtcacgg ccaggcccag
     2341 gtgctggtac aacacgccat cgaccgctcc cggcgggacc tccggcacca gatcgctgtc
     2401 gttgaccacg cggaaggtgg tcacgcccag ggagttgtag gcggcggcga agtccggcgc
     2461 ggccaggcgc ggactggcga agttgtagtg ctccagcgcc tgatccggcc agcgctcgcg
     2521 catgtccagt acggccatgc tggagagcgc gcagcccagg ctgtgaccgc aggcccacag
     2581 cggcccggtc ggctgcaggc tgtccagcgc cgccagggcg aggtcgcgca gcgaggtgta
     2641 gagcttgagg aagccagcgt gcacatggcc gactccgccc tcctgccagg gccagggcgc
     2701 ctgctgcgcg tccacatcgt cgagccagtc ctgcgccgac tcggtgccgc gcagcaccag
     2761 gtaggtctcg ccctgatcgt tggcggcggc gaagccgaaa ggctcggact cgttgatgaa
     2821 gcgcaggtcg ctgaggatgc tccagatcgg ctgggaaaag cgccagcccg gcaggtccgg
     2881 cggcgtccag acgaagtcct gcgggcggcg cgggcggtcc tgggtttgcc actggcggta
     2941 ctgggcgtag gcctggtcga ccagctgcgc gcagagcagc gcccggtcca gggagaagtg
     3001 ttcggggaag tacaggggca ggctggacat gcggcctcct tgccggcggg aactgggaca
     3061 ctctagccca gtgacccggc ctcgtgggcg gagttcccgg g
//
LOCUS       DATIHC010000827         2843 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_34989, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000827 DATIHC010000000
VERSION     DATIHC010000827.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2843)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2843)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2843
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34989"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..303)
                     /locus_tag="VLF16_13825"
     CDS             complement(<1..303)
                     /locus_tag="VLF16_13825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012017959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HSX72003.1"
                     /translation="MFDKLLIANRGAIACRILRTLRQLDVKGVAVYSEADAASLHIQQ
                     ADEAFSLGEGPAAQTYLVVDKILAVAKQTGAKAIHPGYGFLSENAAFARAVEAAGLT"
     gene            complement(860..1495)
                     /locus_tag="VLF16_13830"
     CDS             complement(860..1495)
                     /locus_tag="VLF16_13830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014820341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urea amidolyase associated protein UAAP2"
                     /protein_id="HSX72004.1"
                     /translation="MSAFESTLHPEAAVYRHTIPAGEPFLFEVKAGQTLRLLDLEGNQ
                     AVDTLFFSANNPRERFDPQRTLRKQNNVYLTTGTVLYSNLGNPLLTIVADTCGRHDTL
                     GGACAQESNTVRYALDKRYMHSCRDNFLRGALHDGRLEKRDLGANINFFMNVPVTPEG
                     GLTFEDGISAPGKYVELKAHMDVIVLISNCPQLNNPCNGWNPTPAEVLVWD"
     gene            complement(1506..2234)
                     /locus_tag="VLF16_13835"
     CDS             complement(1506..2234)
                     /locus_tag="VLF16_13835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013982715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urea amidolyase associated protein UAAP1"
                     /protein_id="HSX72005.1"
                     /translation="MTASLALRPTLYEETVPGGGHTSFVLKRGQLLRITDLEGGANVS
                     LLLLSSAEKSERLNLPDTLKCQHTAKLTAGHCLYSDMGRVLAAITADTCGWHDSFGGV
                     LNAEEVHEKYGAGRYQELRNGFFRNGVDNLLVEMGKWNLNLQDLLMNLNLFSQVTVDA
                     DGCFHFQPGNSKAGDYIELYAPMDTLVVLTALQHPMDPNPQYAPKPVQLAWSRVESDG
                     ISVLCRTSRPENGRGFHNTERLYL"
     gene            complement(2237..>2843)
                     /locus_tag="VLF16_13840"
     CDS             complement(2237..>2843)
                     /locus_tag="VLF16_13840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017519447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSX72006.1"
                     /translation="ILLAGQPLVAEPDASRGVVFQRYSVFPHLTVLDNVAIGLELPRS
                     PLLGRLFGNAKREARERAAELLRKVGLGHALDKYPSALSGGMQQRLAIAQALITKPRV
                     LLLDEPFGALDPGIRKDMHALLLELWRETGLTVFMVTHDLSEGFSLGTRLLVFDKVRH
                     DPHAPNAFGARITYDIPLNSDRRGALPAPLAERLQPQLQGA"
BASE COUNT          410 a          846 c         1066 g          521 t
ORIGIN      
        1 ggtcaggccg gcggcctcga cggcccgggc gaaggcggcg ttctcggaga ggaagccgta
       61 gccggggtgt atggctttcg cgccagtctg cttggccacg gcgaggatct tgtcgaccac
      121 caggtaggtc tgggcggccg ggccttcgcc gaggctgaag gcctcgtcgg cctgctggat
      181 atgcaggctg gcggcgtcgg cctcggagta cacggccacg cctttgacgt cgagctggcg
      241 cagggtgcgc aggatgcggc aggcgatggc gccgcggttg gcgatcagca gtttgtcgaa
      301 catggcagaa ccctcgaaag gggtggcggg ccgtcccgtc ttattcgtct gcaccacggt
      361 cgtccgtggc tgaaagtctg gtgttggcgt tcccggattt gcatccgggc tactgcggat
      421 tgcattcggg ttacaggttg gcgttggcag tcagcctcaa cttttcctgc ggtctggttt
      481 ggtgttgctg gcttcccctc tcccctacac gggccgcccc ggtgcctctc cactaggcgt
      541 gcccccacaa atgggagaga ggagacaagc gcgagactcc aggtccactt cgaaccagtc
      601 cctctcacat ttatgggaga gggctaggga gaagggctgg tttcggatca cgacgaggct
      661 ctgtccctca cccccgccct ctccccgggg ggagaggagg ttggctgtgc gggtggttgg
      721 ggtgtgtgtt cgtccaggca ctgccccgcg cggctctggc acagccggaa cagccaaccc
      781 cgtagcccgg atgcaagccg gggatcgggg ttgccggcgg cccggattgc atccgggcta
      841 cgctcgttcg ggcttcggtt cagtcccata ccagcacctc cgccggcgtc gggttccagc
      901 cgttgcaggg gttgttcagc tgcgggcagt tggagatcag cacgatcacg tccatgtgcg
      961 ccttgagctc gacgtacttg cccggtgccg agatgccgtc ctcgaaggtc aggccgcctt
     1021 ccggggtgac cggcacgttc atgaagaagt tgatgttggc gccgaggtcg cgcttctcca
     1081 ggcggccgtc gtgcagggcg ccgcgcagga agttgtcgcg gcagctgtgc atatagcgct
     1141 tgtccagcgc gtagcgcacg gtgttgctct cctgggcgca ggcgccgccg agggtgtcgt
     1201 ggcggccgca ggtgtcggcg acgatggtca gcagcgggtt gccgaggttg gagtagagga
     1261 ccgtgccggt ggtcaggtag acgttgttct gcttgcgcag ggtgcgctgc gggtcgaagc
     1321 gctcgcgcgg gttgttcgcg ctgaagaaca gggtgtcgac cgcctggttg ccctccagat
     1381 cgagcaggcg cagggtctgg ccggccttca cctcgaacag gaacggctcg ccggccggga
     1441 tggtatggcg gtacacggcg gcttcggggt gcagggtgct ttcgaatgca gacatggcgc
     1501 agtcctcaga ggtacagccg ttcggtgttg tggaagccgc ggccgttctc cgggcgcgaa
     1561 gtgcggcaga gcacgctgat gccgtcgctc tcgacgcggc tccaggcgag ttgcaccggc
     1621 ttgggcgcgt actgcgggtt ggggtccatc gggtgctgca gggcggtgag caccaccagg
     1681 gtgtccatcg gcgcgtacag ctcgatgtag tcaccggcct tggagttgcc cggttggaag
     1741 tggaagcagc cgtccgcatc gaccgtcacc tggctgaaca ggttgaggtt catcagcagg
     1801 tcctgcaggt tgaggttcca cttgcccatc tccaccagca ggttgtccac gccattgcgg
     1861 aagaagccgt tgcgcagttc ctggtagcgc ccggcgccgt acttctcgtg gacttcctcg
     1921 gcgttgagca cgccgccgaa gctgtcgtgc cagccgcagg tgtcggcggt gatggcggcc
     1981 agcacccggc ccatgtccga gtacaggcag tggccggcgg tgagcttggc ggtgtgctgg
     2041 cacttgaggg tgtccggcag gttcagacgc tcgctttttt cggcggacga aagcagcagc
     2101 aggctgacgt tggcgccgcc ttcgagatcg gtgatgcgca gcagctggcc gcgcttgagc
     2161 acgaaggagg tatggccgcc gccggggacg gtttcctcgt agagggtcgg gcgcagggcg
     2221 agagaggcag tcatgctcag gctccttgga gttgcggttg caggcgctcg gccagcgggg
     2281 cgggcagggc cccgcggcga tcgctgttga gcggaatgtc gtaggtgatg cgggcgccga
     2341 aggcgttggg ggcgtgcggg tcgtggcgca ccttgtcgaa caccagcaga cgggtgccga
     2401 ggctgaagcc ttcggagagg tcgtgagtga ccatgaagac ggtcagcccg gtctcgcgcc
     2461 acagctccag cagcagggcg tgcatgtcct tgcggatgcc cgggtccagc gcgccgaagg
     2521 gctcgtcgag cagcagcacg cgtggcttgg tgatcagcgc ctgggcgatg gccaggcgct
     2581 gctgcatgcc gccggacagc gcgctggggt acttgtccag ggcgtggccg aggccgacct
     2641 tgcgcagcag ctcggcggcg cgctcgcggg cctcgcgctt ggcattgccg aacaggcggc
     2701 cgagcagcgg tgagcgcggc agctccaggc cgatggcgac gttgtccagc accgtcaggt
     2761 gcgggaatac cgagtagcgc tggaacacca cgccgcggct ggcatccggc tcggcgacca
     2821 gcggctggcc ggccagaagg atc
//
LOCUS       DATIHC010000828         3773 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_15300, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000828 DATIHC010000000
VERSION     DATIHC010000828.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3773
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15300"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            92..1417
                     /locus_tag="VLF16_13845"
     CDS             92..1417
                     /locus_tag="VLF16_13845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013715504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HSX72007.1"
                     /translation="MDLFRSAPVAQPLAARLRATSLDEYVGQEHVLGQGKPLREALEQ
                     GALHSMIFWGPPGVGKTTLAKLLAQVSDAHFETISAVLSGVKEIRQAVEVAKQQAAQY
                     GRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVL
                     KSLDEAAMRKLVARALGEGKGLGERNLSLPEESFQILLAAADGDGRRLLNLLENAADL
                     AEDGGEMGPELLHNLLGDSRRRFDKGGEAFYDQISALHKSIRGSNPDAALYWYARMID
                     GGCDPLYLARRVVRMASEDIGNADPRALTLCLNAWDVQERLGSPEGELAVAQAVVYLA
                     CAPKSNAVYMGFKAALRDAAEHGSLEVPLHLRNAPTRLMKELGYGEEYRYAHDEPDAY
                     AAGEDYFPETLAPRRYYEPVPRGLELKIRDKLADLASLDAASPRQRRKP"
     gene            1414..1788
                     /gene="crcB"
                     /locus_tag="VLF16_13850"
     CDS             1414..1788
                     /gene="crcB"
                     /locus_tag="VLF16_13850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012701379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HSX72008.1"
                     /translation="MIGMVVAVALGGMLGTLVRYASGSWVTSHFPQHFYGATLAVNLV
                     GCLLIGYLYGLFLMRPEVPEALRAGLMVGFLGGLTTFSSFSLDTLRLLENGQAPMAIG
                     YAAASVLGGLLATWAGLTLTKL"
     gene            1802..3082
                     /gene="serS"
                     /locus_tag="VLF16_13855"
     CDS             1802..3082
                     /gene="serS"
                     /locus_tag="VLF16_13855"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HSX72009.1"
                     /translation="MLDSKLVRTQLQEIADRLATRGFQLDVARFEALESQRKSVQMRT
                     EQLQAERNARSKSIGQAKARGEDIAPLLAEVDKMGSDLEEGKRELDGIQTELDNLLLN
                     IPNLPHESVPVGADEDGNVEVARWGTPRSFDFEIKDHVALGEQHGWLDFETAAKLSGA
                     RFALLRGPIARLHRALAQFMINLHTGEHGYEEAYTPYLVQAPALQGTGQLPKFEEDLF
                     KITREGEADFYLIPTAEVSLTNIVSGEILDAKQLPLKFTAHTPCFRSEAGASGRDTRG
                     MIRQHQFDKVEMVQIVEPSKSFEALEGMTANAERVLQLLELPYRKLALCTGDMGFSAV
                     KTYDLEVWVPSQDKYREISSCSNCGDFQARRMQARFRNPETGKPELVHTLNGSGLAVG
                     RTLVAVLENYQQADGSIRVPDVLKPYMGGIEVIG"
     gene            3215..>3773
                     /locus_tag="VLF16_13860"
     CDS             3215..>3773
                     /locus_tag="VLF16_13860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012018708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HSX72010.1"
                     /translation="MDFLPLFHKLQGRVVLVVGGGEVALRKARLLSDAGAQLRVVAPE
                     IRGDLRELAGEEATALRGYEPADLQGVVLVIAATDDETVNARISFDAQALGIPVNVVD
                     APALCSVIFPAIVDRSPLIVAVTSGGDAPVLARLIRAKIETWIPATYGQLAGLAKKFR
                     ERVKQLFPDVQQRRVFWEDVFQGQIA"
BASE COUNT          640 a         1275 c         1241 g          617 t
ORIGIN      
        1 aaatgaacca gaagctggac cccgcccagt tcgagttcga ggtgccggaa ggcgccgacg
       61 tcatccagga ataacgaggc cgttcgccac cgtggacctg ttccgctccg cacccgtcgc
      121 ccagcctctg gccgcgcgcc tgcgcgccac cagcctggac gagtacgtcg gccaggagca
      181 tgtgctgggc cagggcaagc cgctgcgcga ggcgctggag cagggcgcgc tgcactcgat
      241 gatcttctgg ggcccgcccg gagtcggcaa gactacgctg gccaagctgc tggcccaggt
      301 ctccgacgcg cacttcgaga cgatttccgc cgtgctctcc ggcgtgaaag agatccgcca
      361 ggcggtggaa gtggccaagc agcaggccgc ccagtacggc cgccgcacca ttctcttcgt
      421 cgacgaggtg caccgcttca acaagagcca gcaggacgcc ttcctgccct atgtcgaaga
      481 cggcacgctg atcttcatcg gcgcgacgac ggaaaacccc tccttcgagc tgaacaacgc
      541 actgctctcg cgtgctcgcg tctacgtgct gaagagcctg gacgaggcgg ccatgcgcaa
      601 gctggtggcg cgcgcgctgg gcgagggcaa gggcctcggc gagcgcaatc tgtcgctgcc
      661 cgaagagagc ttccagatcc tcctggccgc cgccgatggc gatggccgac gcctgctcaa
      721 cctcttggag aacgccgccg acctggccga agacggcggt gagatgggcc cggagctgtt
      781 gcacaacctg ctgggcgaca gccgccgccg tttcgacaag ggtggcgagg ccttctacga
      841 ccagatctcc gcgttgcaca agtcgatacg cggctccaat cccgacgctg cgctgtactg
      901 gtatgcgcgc atgatcgacg gcggctgcga cccgctttat ctggcccggc gcgtggtgcg
      961 catggccagc gaggacatcg gcaacgccga cccgcgcgcc ctgaccctgt gcctcaatgc
     1021 ctgggacgtg caggagcgcc tgggcagccc cgagggcgag ctggcggtgg cccaggctgt
     1081 tgtctacctg gcctgcgcgc cgaagagcaa cgcggtgtac atgggcttca aggccgcact
     1141 gcgcgacgcg gcggaacatg gctcgctgga agtgccgctg cacctgcgca acgcgccgac
     1201 cagattgatg aaggagctgg gctacgggga ggaataccgc tacgcccacg acgagccgga
     1261 tgcctacgct gctggcgagg actatttccc cgagacgctt gcgccgcgcc gctactacga
     1321 gccggtgccg cgcggcctcg agctgaagat ccgcgacaag ctggccgacc tggccagcct
     1381 ggacgccgcc agccctcggc agaggcgcaa accgtgatcg gcatggtcgt cgccgtggct
     1441 ctgggcggca tgctcggcac cctggtgcgc tacgcgtctg gtagctgggt caccagccac
     1501 tttccccagc atttctacgg cgctactctg gcggtcaacc tggtcggttg cctgttgatc
     1561 ggttatctgt acggcctgtt cctcatgcgc ccggaagtgc cggaagcgct gcgcgccggg
     1621 ctgatggtcg gcttcctcgg gggcctgacc accttttcat ccttttccct cgatacgctg
     1681 cgcctgctgg aaaacggcca ggcacccatg gccatcggct atgcggccgc cagcgtattg
     1741 ggtggcctgc tcgccacctg ggccggcctg acattaacca agctctgaac gagaacctcc
     1801 catgctcgac tccaaactgg tccgtaccca actgcaagag attgcggatc gcctggctac
     1861 ccgcggcttc caactggacg tggcgcgctt cgaagcgctc gagtcccagc gcaagtcggt
     1921 gcagatgcgc accgagcagc tgcaggccga gcgcaacgcc cgctccaagt ccatcggcca
     1981 ggccaaggca cgtggcgagg atatcgcccc gctgctggcg gaagtcgaca agatgggcag
     2041 cgacctggag gagggcaagc gcgagctaga cggcatccag accgagctgg acaacctgct
     2101 gctgaacatc cccaacctgc cgcacgagtc cgtgccggtc ggcgccgacg aagacggcaa
     2161 cgtcgaggtg gcgcgttggg gcaccccgcg cagcttcgat ttcgagatca aggaccacgt
     2221 cgccctcggc gagcagcacg gctggctgga cttcgagacc gccgccaagc tctctggcgc
     2281 gcgtttcgcc ctgctgcgcg gtccgattgc ccgcctgcac cgcgccctgg cccagttcat
     2341 gatcaacctg cacaccggcg agcacggcta cgaggaggcc tacaccccgt acctggtgca
     2401 ggccccggcg ctgcagggca ccggccagtt gccgaagttc gaggaagacc tgttcaagat
     2461 cacccgcgaa ggcgaggcgg acttctacct gatcccgacc gccgaagtct ccctgaccaa
     2521 catcgtctcc ggcgagatcc tcgacgccaa gcaactgccg ctgaagttca ccgcccacac
     2581 cccgtgcttc cgcagcgagg cgggcgcctc cggccgcgac acccgcggca tgatccgcca
     2641 gcatcagttc gacaaggtcg agatggtgca gatcgtcgag ccgtccaagt ccttcgaggc
     2701 cctggagggc atgaccgcca acgccgagcg cgtactgcag ctgctcgagc tgccgtaccg
     2761 caagctggcg ctgtgcaccg gcgacatggg cttctctgcg gtaaagacct acgatctgga
     2821 ggtctgggtg ccgagccagg acaagtatcg cgagatttcg tcctgctcca actgcggcga
     2881 cttccaggcc cgccgcatgc aggcgcgctt ccgcaatccg gagaccggca agccggagct
     2941 ggtgcacacc ctcaacggct caggcctggc ggtgggccgt accctggtag cggtgctgga
     3001 gaactatcag caggccgacg gcagcatccg cgtgccggac gtgctcaagc cctacatggg
     3061 cggcatcgaa gtcatcggtt gatcgtcagg tgcgccgcgc gcaccgccag gcggaggtgt
     3121 gcacggtata accgaagcga ttgagccgca gctccttggc cgtctcatga tgtgctgacg
     3181 gccaccctgt ttttactctg gttagaagtg agccatggat ttccttccgc tgttccacaa
     3241 gcttcagggg cgtgtcgtgc tggtcgttgg cggcggcgag gtggcgctgc gcaaggcgcg
     3301 cctgctcagc gacgccggtg cgcagctgcg cgtggtggcg ccggagattc gtggcgacct
     3361 gcgcgagctg gcgggggaag aggcgaccgc cctgcgcggc tacgagcccg cagatctgca
     3421 gggcgtggtc ctggtgatcg ccgctacgga cgacgagacg gtcaatgcgc gcatctcctt
     3481 tgatgctcaa gcgctgggca ttccggtcaa cgtggtggac gcgccggccc tgtgcagcgt
     3541 gatcttcccg gctatcgtcg accgttcgcc gctgatcgtc gccgtcacca gcggcggcga
     3601 cgcgccggtg ctggcgcggc tgatccgcgc caagatcgag acctggattc ccgccaccta
     3661 tgggcaactg gctggcctgg cgaagaaatt ccgtgaacgg gtcaagcagc tgtttcccga
     3721 cgtgcagcag cgccgggtgt tctgggaaga cgtgttccag ggacagattg ccg
//
LOCUS       DATIHC010000829         1828 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13940, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000829 DATIHC010000000
VERSION     DATIHC010000829.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1828)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1828)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1828
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13940"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..706)
                     /locus_tag="VLF16_13865"
     CDS             complement(<1..706)
                     /locus_tag="VLF16_13865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003445211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF126 domain-containing protein"
                     /protein_id="HSX72011.1"
                     /translation="MSAAVAIEGRSLVAGRGQGTLLHADLGLSFWGGVDPFSGEVIDR
                     HHPLSGQSLAGRILAIPSGRGSCTGSSVLLELILNGPAPAALVLAEPDEILSLGALVA
                     EHVFDVQLPVLCIGHAAFAELAAHAGTIARIDGERLQLFGSAPDDSWRAEPIAHGAVQ
                     PGGIALSERDRAILAGAHGKAAQVAMQLVLRMAELQGARELLDVTQAHIDGCIYTGPA
                     CLRFAQQLLDWDARVCV"
     gene            complement(727..1545)
                     /locus_tag="VLF16_13870"
     CDS             complement(727..1545)
                     /locus_tag="VLF16_13870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019827253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HSX72012.1"
                     /translation="MNRKTLAVALGAALSASLAATAQADKLDDIIESGKLRCAVTLDF
                     PPMGFRDADNNPAGFDVDYCNDLAKVLGVEAEVVETPFPDRIPALISGRADVIVASTS
                     DTLERAKTVGMTVPYFAFQMVVLTREDAGVNSYTDLKGKKLGNTSGTYEAIALEKDQK
                     AWGEGSFRAYQSQNDTILAVAQGHIDATVVTNTVAAATLKSGKYKGLKIAGDAPYVVD
                     YVSLAAKRNEYGLLNYLNLFVNQQVRNGRYDELWKKWVGDEIKPANLTVPNVYY"
BASE COUNT          290 a          571 c          647 g          320 t
ORIGIN      
        1 gcacgcagac cctggcgtcc cagtccagta gctgctgggc gaagcgcagg caggccgggc
       61 cggtgtagat gcagccgtcg atgtgtgcct gggtgacgtc gagcagttcg cgggcgccct
      121 gcagctcggc catgcgcagc accagctgca tggctacctg ggccgccttg ccgtgcgcgc
      181 cggcgaggat ggcgcggtcg cgttcgctca gggcgatgcc gcccggctgc acagcgccat
      241 gggcaatcgg ctcggcgcgc cagctatcgt ccggcgcgct gccgaacagc tgcaggcgct
      301 cgccgtcgat gcgggcgatg gtgccggcgt gagctgccag ctcggcgaag gccgcatggc
      361 cgatgcacag caccggcagc tggacgtcga agacatgctc ggcgaccagg gcgccgaggc
      421 tgagaatctc gtcgggctcg gccagcacca gcgccgccgg tgccggaccg ttgaggatca
      481 gttccagcag gacgctgctg ccggtgcagg agccgcgtcc gctgggaatg gccaggatgc
      541 gcccggccag ggattgcccg ctcagcggat ggtgacggtc gatcacctcg ccgctgaacg
      601 gatcgacgcc gccccagaag ctcaggccca ggtcggcgtg gagcagggtg ccctgacccc
      661 gccccgccac cagactccgg ccctcgatcg ctaccgctgc ggacatcgtc gctgccctcg
      721 tgcctatcag tagtacacgt tcggcacggt cagattggcc ggcttgatct cgtcgccgac
      781 ccacttcttc cacagctcgt cgtagcggcc gttgcgcacc tgctggttga cgaacaggtt
      841 gaggtagttg agcaggccgt actcgttgcg cttggccgcc agcgacacgt agtcgacgac
      901 atagggcgca tcgccggcga tcttcaggcc cttgtacttg ccggacttga gggtggcggc
      961 ggccacggtg ttggtcacca cggtggcgtc gatatggccc tgggccacgg cgaggatggt
     1021 gtcgttctgc gactggtagg cgcggaagct gccttcaccc caggccttct ggtccttctc
     1081 cagggcgatg gcctcgtagg tgccgctggt attacccagc ttcttgccct tgaggtcggt
     1141 gtagctgttc acgccggcat cctcgcgggt cagcacgacc atctggaagg cgaagtaggg
     1201 cacggtcatg cccacggtct tggcgcgctc aagggtgtcg gaggtggagg cgacgatcac
     1261 gtcggcacgg ccggaaatca gggccgggat gcggtccggg aacggcgtct cgaccacctc
     1321 ggcctcgacg ccgagcacct tggccaggtc gttgcaatag tccacgtcga agccggccgg
     1381 gttgttgtcg gcgtcacgga aacccatggg cgggaagtcc agggtcacgg cgcagcgcag
     1441 cttgccggac tcgatgatgt cgtcgagctt gtcggcctgg gcggtggcgg ccagagatgc
     1501 gctgagggcg gcgccgaggg cgacggcgag agtctttcta ttcatgtgca gcctcatgtg
     1561 tgtctgatgg ttggcagatg aaacagatgt atcttgaatt tcgtatacga tatttgatta
     1621 gcaagggctg tgccggattg gccgggacag atgcgatgat ccgtccagcc cgcgccacat
     1681 cggctcgagc gagcaaacgc agcggtggcg aaaagactag tcggcccctt tcgtgaccgc
     1741 ccggtgttac agaacgaagc atgagcgagt ccgcgtgccc gcaaacggaa cacggcggtg
     1801 ggcgttgggt tgcacctggt gcgacccg
//
LOCUS       DATIHC010000830         2744 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13947, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000830 DATIHC010000000
VERSION     DATIHC010000830.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2744
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13947"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            25..1917
                     /gene="cysN"
                     /locus_tag="VLF16_13875"
     CDS             25..1917
                     /gene="cysN"
                     /locus_tag="VLF16_13875"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysN"
                     /protein_id="HSX72013.1"
                     /translation="MSHQSDLISEDILAYLAQHERKELLRFLTCGNVDDGKSTLIGRL
                     LHDSKMIYEDHLEAITKDSKKVGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA
                     KRKFIIADTPGHEQYTRNMATGASTCDLAIILIDARYGVQTQTKRHSFIASLLGIKHI
                     VVAINKMDLKDFDQGVFEQIKADYLAFAEKIKLNASSLHFVPMSALKGDNVVNKSQRS
                     PWYTGQSLMEILETVEIAADRNLDDMRFPVQYVNRPNLNFRGFAGTLASGVVRKGDAV
                     LALPSGKGSKVKSIVTFEGELEQAGPGQAITLTLEDEIDVSRGDMLVHADNRPQVTDG
                     FEAMLVWMAEEPMLPGKKYDIKRATSYVPGSIPSIVHKVDVNTLEEAAASSLQLNEIA
                     RVKVALDAPIALDGYGQNRTTGAFIVIDRLTNGTVGAGMIIAAPQSGDGHRDTVGHVS
                     SDERAARFGQQPATVLFSGLSGAGKSTLAYAVERKLFDMGRAVYVLDGQNLRHDLNKG
                     LPQDRAGRTENWRRAAHVARQFNEAGLLTLAAFVAPDAEGREQAKALIGADRLITVYV
                     QASPAACRERDPQGLYAAGGDNIPGESFPYDVPLNADLVIDTQSVPVEEGVKQVLDLL
                     RARGAI"
     gene            complement(2228..2662)
                     /locus_tag="VLF16_13880"
     CDS             complement(2228..2662)
                     /locus_tag="VLF16_13880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003228072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1043 family protein"
                     /protein_id="HSX72014.1"
                     /translation="MEQSLTPWLLPALALLVGVAIGFLAARLLPNAAPNRTQRQLDEM
                     QQRFDSYQSEVVTHFNTTASLVKKLTQSYQDVQEHLSQGANRLAADELTRQRLLAALH
                     TEDGKAPRERLTPPRSNEAPKDYAPKEPDSPGTLDETFGLKR"
BASE COUNT          464 a          934 c          883 g          463 t
ORIGIN      
        1 ggctacttct aaggttctcg caccatgtcg catcaatccg atctgatcag cgaggacatc
       61 ctcgcctacc tggcccagca cgagcgcaag gaactgctgc gcttcctcac ctgcggcaat
      121 gtcgacgacg gcaagagcac cctgatcggg cgcctgctgc acgactccaa gatgatctac
      181 gaagaccacc tggaggccat caccaaggac tccaagaagg tcggcaccac cggtgacgac
      241 gtcgacctgg cgttgctggt ggacggcctg caggccgagc gcgagcaggg catcaccatc
      301 gacgtcgcct accgctactt ctcgaccgcc aagcgcaagt tcatcatcgc cgacacgccc
      361 ggccacgagc agtacacccg caacatggcc actggtgcgt ccacctgcga cctggccatc
      421 atcctgatcg acgcccgcta cggtgtgcag acccagacca agcgccacag cttcatcgcc
      481 tcgctgctgg gcatcaagca catcgtcgtc gccatcaaca agatggacct caaggacttc
      541 gaccagggcg tgttcgagca gatcaaggcc gactacctgg ccttcgccga gaagatcaag
      601 ctgaacgcca gctcgctgca cttcgtgccc atgtcggcgc tgaagggcga caacgtggtc
      661 aacaagtccc agcgctcgcc ctggtacacc ggccagtcgc tgatggagat tctcgagacc
      721 gtcgagatcg ctgccgaccg taacctcgat gacatgcgct tcccggtgca gtacgtcaac
      781 cgcccgaacc tgaacttccg cggcttcgcc ggcaccctgg ccagcggcgt ggtgcgcaag
      841 ggtgacgcgg tgctggcact gccgtccggc aagggcagca aggtcaagtc catcgtcacc
      901 ttcgagggcg agctggagca ggccggcccg ggccaggcca tcaccctgac cctggaagac
      961 gagatcgacg tctcccgcgg cgacatgctg gtgcatgccg acaaccgccc gcaggtcacc
     1021 gacggcttcg aggcgatgct ggtgtggatg gccgaggagc cgatgctccc gggcaagaag
     1081 tacgacatca agcgcgccac cagctacgtg ccgggctcga tcccgagcat cgtccacaag
     1141 gtcgacgtca acaccctgga agaggccgcc gccagcagcc tgcagctgaa cgagatcgcc
     1201 agggtcaagg ttgccctcga cgcacccatc gcgctcgacg gctatgggca gaaccgcacc
     1261 accggcgcct tcatcgtcat cgaccgcctg accaatggca ccgtcggcgc cggcatgatc
     1321 atcgccgcgc cgcagtcggg tgacggtcat cgcgacaccg tcggccacgt cagcagcgat
     1381 gagcgcgccg cgcgcttcgg tcagcagcct gccaccgtac tgttcagcgg cctatccggc
     1441 gccggcaaga gcaccctggc ctatgccgtg gagcgcaaac tgttcgacat gggccgtgcc
     1501 gtgtacgtgc tggatggcca gaacctgcgc cacgacctga acaagggcct gccgcaggac
     1561 cgcgccggtc gtaccgagaa ctggcgccgc gccgcccacg ttgcccgtca gttcaacgag
     1621 gccggcctgc tgaccctggc cgccttcgtc gccccggatg ccgagggtcg cgagcaggcc
     1681 aaggcgctga tcggtgccga tcgcctgatc accgtgtatg tccaggcctc gccggcggcc
     1741 tgccgcgagc gcgatccgca gggcctgtat gccgccggtg gcgacaacat cccgggcgag
     1801 tccttcccct acgacgtacc gctgaacgcc gatctggtga tcgacaccca gtcggtgccg
     1861 gtggaggagg gtgtcaagca ggtgctcgat ctgctgcgtg cccgcggcgc gatctgatcg
     1921 cagcgcccac gaaaagcccc gcctggtgcg gggctttttc ttttccgcag gcgcggcgcc
     1981 ccgcactcct ccatgcgtag ggtgcgccgt gcgcaccagg gcggctcgct catggctccg
     2041 cctgctgcgt cagaatctgg aagcgccacg accgctcggt acaggcctgc tcgtttaggg
     2101 cttaaacgcg atcatccgtt ttccgccagg tgcacgcggc gcaccctgcg ttcggtgcac
     2161 cgcggacggc acataaatcc cggccaagaa aaagccccgc atcggcgggg cttctcgttc
     2221 gggcctgtca gcgcttgagg ccgaaggtct cgtccagggt gccgggggag tccggttcct
     2281 tcggtgcgta gtccttgggc gcctcgttgc tcctcggcgg agtcaggcgt tcgcgcgggg
     2341 ccttgccgtc ttcggtgtgg agtgcggcga gcaggcgctg gcgggtcagt tcgtcggcgg
     2401 ccaggcggtt ggcgccctgg gacaggtgct cctgcacgtc ctggtagctc tgggtcagct
     2461 tctttaccag gctggcggtg gtgttgaagt gggtcaccac ttcgctctgg tagctgtcga
     2521 agcgctgctg catttcgtcc agctggcgct gggtgcggtt gggggctgcg ttgggtagca
     2581 ggcgcgccgc caggaagccg atggcgacgc cgaccagcaa cgcgagggcg ggcagcagcc
     2641 agggggtgag cgattgttcc acgagtcctt cctctgaaag cggctttgtt ttacggtagc
     2701 ggctctcgcc ggcgctgtat accgcggctt agcctgttgt gcga
//
LOCUS       DATIHC010000831         2781 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17582, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000831 DATIHC010000000
VERSION     DATIHC010000831.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2781
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17582"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1910
                     /locus_tag="VLF16_13885"
     CDS             <1..1910
                     /locus_tag="VLF16_13885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSX72015.1"
                     /translation="DLLISAPESEHLEPSEAITAIRRQSKDIPVIQLVAENDSDAITE
                     ALMLGAQDALPQGEDERLILVANRELANLEERRSRRAAEVALREAEKRCQLLLDSSVD
                     AITYVHDGMHIYANRAYLQLFGYEDAEELEGMPMIDLIHCDDQVRFKDFLKGYASGEG
                     STELSCGGVKPDGQRFQARMTFSPATYDGEPCIQVVIRADSDNAELEEKLREISSQDL
                     VTGLYNRNYFLELMDGAAQRAVNDNQISSLAYIRIDRYNEAMGEVGVAGIDILLTDLA
                     NMLRAHFGDKAELARFGDDVFTAMLAQVSPQQLQEQLLPLLKKVEGHLFDVAGRTVQT
                     TLSVGIAGLSEQTSKAQEVLDRAHRCADELDGNAIKVYNPADELAAAANRGSLVAMIQ
                     QALENNSFRLLFQPIISLRGDSDEHYEVLLRLLNPQGEEVPAADFLSAAKDAGLAEKI
                     DRWVILNSIKLLAEHRSKGHNTRLFVHLSANSLQDQTLLPWLSVALKAARLPSDALVF
                     QIGEPDAVAYLKQAKALTQGLAELHCKVALSQFGCALNPFNTLKHIGVDFVKVDGSFS
                     QDLTNADNQEALKTLLASLHAQAKLTIVPFVESASVLATLWQAGVNYIQGHYLQGPSQ
                     SMDYDFSAGDE"
     gene            complement(2009..>2781)
                     /gene="serB"
                     /locus_tag="VLF16_13890"
     CDS             complement(2009..>2781)
                     /gene="serB"
                     /locus_tag="VLF16_13890"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014854302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036424 - L-phosphoserine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HSX72016.1"
                     /translation="IEFSVRGEPADVDALRAEFLSVAQELNVDIAFQRDSVFRRNRRL
                     AVFDMDSTLIEAEVIDELAKAHGVGDKVSEITERAMRGELDFRASFKERLALLQGLSE
                     DVLEEIGASLRLTEGAEVLFAELKRLGYKTAILSGGFTYFAKQLQARLGIDYVFANEL
                     QTVDGKVTGVAVEPIVDAQRKADLLRELAEKEGLRLEQTIAVGDGANDLPMLGLAGLG
                     VAFRAKPLVKQSAKQAISTLGLDGILYLLGFRDRDGQE"
BASE COUNT          512 a          973 c          873 g          423 t
ORIGIN      
        1 gggatctgct gatcagcgcg cccgagagcg agcacctcga gccgagcgag gcgatcaccg
       61 ccatccgccg ccagtccaag gacatcccgg tgatccagct ggtcgccgag aacgattccg
      121 atgccatcac cgaagccctg atgctgggcg cccaggacgc cctgccccag ggcgaggacg
      181 agcgcctgat cctggtggcc aaccgcgaac tggccaacct cgaggagcgc cgctcccgcc
      241 gcgccgccga agtggccctg cgtgaagccg agaagcgctg ccagctgctg ctggacagct
      301 cggtggacgc catcacctac gtccacgacg gcatgcacat ctatgccaac cgcgcctacc
      361 tgcaactgtt cggctatgaa gacgccgaag agctggaagg catgccgatg atcgacctga
      421 tccactgcga cgatcaggtg cgcttcaagg acttcctcaa gggctacgcc agcggcgaag
      481 gcagcaccga gctcagctgc ggcggcgtca agccggatgg ccagcgcttc caggcgcgca
      541 tgactttctc cccggccacc tacgacggcg agccatgcat ccaggtggtg atccgcgccg
      601 acagcgacaa cgccgagctg gaagagaagc tgcgcgagat cagcagccag gacctggtca
      661 ccggcttgta caaccgcaac tatttcctcg agctgatgga cggtgcggcc cagcgcgcgg
      721 tcaacgacaa ccagatttcc agcctcgcct acatccgcat cgaccgctac aacgaggcca
      781 tgggcgaagt cggcgtggcc ggcatcgaca tcctgctgac cgatctggcc aacatgctgc
      841 gtgcccattt cggcgacaag gccgagctgg cccgcttcgg cgacgacgtg ttcaccgcaa
      901 tgctggctca ggtttcgccg cagcagctgc aggaacagct cctgccgttg ctgaagaagg
      961 tcgaaggcca tctcttcgac gtcgccgggc gcacggtgca gaccaccctg tcggtcggca
     1021 tcgccggcct cagcgagcag accagcaagg cccaggaagt cctcgatcgc gcacaccgct
     1081 gcgccgacga gctcgatggc aacgcgatca aggtctacaa cccggccgac gaactcgccg
     1141 ccgccgccaa ccgcggcagc ctggtggcga tgatccagca ggccctggag aacaacagct
     1201 tccgcctgct gttccagccg atcatcagcc tgcgtggcga cagcgacgag cactacgaag
     1261 tgctgctgcg cctgctcaat ccacagggcg aagaggtccc ggccgcggac ttcctcagcg
     1321 ccgccaagga tgccgggctg gccgagaaga ttgatcgctg ggtgatcctc aactcgatca
     1381 agctgctcgc cgagcaccgc agcaagggcc acaacacccg cctgttcgtg cacctgtcgg
     1441 ccaacagcct gcaggatcag acgctgctgc cctggctcag cgtggcactc aaggccgcac
     1501 gcctgccgtc ggatgcgctg gtgttccaga tcggcgagcc cgacgccgtg gcctatctca
     1561 agcaggccaa ggcgctcacc caggggctgg cggagctgca ctgcaaggtc gccctgagcc
     1621 agttcggttg cgcgctgaac cccttcaaca ccctcaagca catcggcgtg gacttcgtga
     1681 aggtggacgg ttccttctcc caggacctga ccaacgcgga caaccaggag gcgttgaaga
     1741 ccctgttggc cagcctgcat gcccaggcca agctgaccat cgtgcccttc gtcgagagcg
     1801 ccagcgtgct agccaccctc tggcaggccg gggtcaacta cattcagggc cactacctgc
     1861 agggcccgag ccagtcgatg gattacgact tctccgccgg cgacgagtga tccatcccca
     1921 tgaaaaagcc ccgcaatcgc ggggcttttt cgttaccgcc gggacgcgcc atgcgcaccg
     1981 ccgggccagt cgctcgtgcg ctaggcgact actcctgacc gtcgcggtcg cggaagccga
     2041 gcaggtaaag aatgccgtcc aggcccaggg tggagatcgc ctgcttggcc gactgcttga
     2101 ccagcggctt ggcgcggaag gccacgccga ggccggccag gccgagcatc ggcaggtcgt
     2161 tggcgccgtc gccgacggcg atggtctgct ccaggcgcag gccttccttc tcggccagtt
     2221 cgcgcagcag gtcggccttg cgctgggcgt cgacgatcgg ctcgacggcc acgccagtga
     2281 ccttgccgtc gacggtctgc aactcgttgg cgaacacgta gtcgatgccc agcctggcct
     2341 gcagctgctt ggcgaagtag gtgaagccgc cggagaggat ggcggtcttg tagcccagcc
     2401 gcttgagctc ggcgaacagc acctcggcgc cctcggtcag gcgcagggag gcgccgatct
     2461 cttccagcac gtcctccgac agcccctgca gcagcgccag gcgctccttg aagctggcgc
     2521 ggaaatccag ctcgccgcgc atggcgcgct cggtgatctc ggacaccttg tcgcccacgc
     2581 catgggcctt ggccagctcg tcgatgacct ccgcctcgat caacgtggag tccatgtcga
     2641 acaccgccag gcggcggttg cggcggaaca ccgagtcgcg ctggaaggcg atgtcgacgt
     2701 tcagctcctg agccacgctg aggaactcgg cgcgcagggc atcgacatcc gccggctcgc
     2761 cacgcaccga gaactcgatg c
//
LOCUS       DATIHC010000832         4757 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_35006, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000832 DATIHC010000000
VERSION     DATIHC010000832.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4757)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4757)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4757
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35006"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..135
                     /locus_tag="VLF16_13895"
     CDS             <1..135
                     /locus_tag="VLF16_13895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250244.1"
                     /note="CcoO; FixO; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HSX72017.1"
                     /translation="LRTLGVPYTDEDIAGAREAVKGKTEMDAIVAYLQGLGTAIKNKR
                     "
     gene            142..327
                     /locus_tag="VLF16_13900"
     CDS             142..327
                     /locus_tag="VLF16_13900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017677205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit 3"
                     /protein_id="HSX72018.1"
                     /translation="MDIGMIRGIGTAVVFIAFIGVVLWAFSSRRKSSFDEAANLPFAD
                     DVPAKKRDEQDSGSNKE"
     gene            324..1301
                     /gene="ccoP"
                     /locus_tag="VLF16_13905"
     CDS             324..1301
                     /gene="ccoP"
                     /locus_tag="VLF16_13905"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019361776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit III"
                     /protein_id="HSX72019.1"
                     /translation="MTLFWSIYISVLSLGTIVALTALIFGVRKGQRPETTEETVGHAF
                     DGIEEFDNPLPKWWFMLFVGTIVFALGYLVLYPGLGTWKGLLPGYNEAGDGRPFASGE
                     TGWTGVHQWEKEMVRADKQYAPIYAKYAQMPIEEVAKDEQALKMGGRLFASNCSVCHG
                     SDAKGAYGFPNLTDNEWRWGGKPEDIKQTIIGGRHGQMPAQAPTIGEEGVRNVAAYVL
                     TELAGRKLPEGATADVAAGKQVFESVCFACHTKEGTGNTAMGAPNLTNPSAFIYGSSF
                     AQLQQTIRYGRSGNMPAQLPYVGSEDKVHLLAAYVYSLSHGNTGANVEK"
     gene            1434..2849
                     /gene="ccoG"
                     /locus_tag="VLF16_13910"
     CDS             1434..2849
                     /gene="ccoG"
                     /locus_tag="VLF16_13910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HSX72020.1"
                     /translation="MSEQIPVRNITPPPAKGGETVDLYASREKIYTRAFTGLFRNLRL
                     GGGAFLFLLYFGTVWLNWSGRQAVWWNLPERKFFIFGATFWPQDFILLSALLIIAAFG
                     LFFITVFAGRVWCGYTCPQSVWTWIFMWCEKITEGDRNQRMKLDKAPMSANKFLRKTA
                     KHGLWILIGLVTGLTFVGYFSPIRELIPNLLTGEADGWAYFWVGFFTLATYGNAGWLR
                     EQVCIYMCPYARFQSVMFDKDTLIVSYDPRRGEHRGPRKKNVDYKAQGLGDCIDCTMC
                     VQVCPTGIDIRDGLQVECIGCAACIDACDSIMDKMNYPRGLISYTTEHNLSGQKTHLL
                     RPRLIGYAVALVAMISMFVWAIASRSLVEVDVLKDRVLFRENEEGHVENVYTVKLMNK
                     AQRDLTYLISVEGIDGLEYEGRREVRAAAGEVLSLPVELSVPPEKLPSSANEIVFRVK
                     ALEDPSIESDADSRFIGPSVR"
     gene            2864..3367
                     /locus_tag="VLF16_13915"
     CDS             2864..3367
                     /locus_tag="VLF16_13915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017677208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FixH family protein"
                     /protein_id="HSX72021.1"
                     /translation="MSPQQPPVNPWYKEVWVWFILGILGLSVVLGTSMLVIATKNPPG
                     LLSDNYYDVGKGINTSLEREELAERLKLKAAFTLDNERGTVSLQLDGYSNPPQLVLNL
                     ISPTQPERDRRVILQPQGDGSYAGNLLDAVEGRRFVELIGQEGGKDWRLFEEKQLASG
                     QRFQLGE"
     gene            3378..>4757
                     /locus_tag="VLF16_13920"
     CDS             3378..>4757
                     /locus_tag="VLF16_13920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HSX72022.1"
                     /translation="MSSPLPCYHCGLPVPAGSRFEARVLDQPRAFCCPGCQAVAEAIV
                     AGGLDGYYRHRSDSAINPQTLPKALPDELALYDRDEVQRNFVEHQGELSETRLLIEGI
                     SCAACGWLIEKHLRSLPGVTEASLNLSNQRLQVRWADSQIPLSQLLAELRRIGYAGHP
                     WQDDEASARLAEENRRSMRQIGVAGLLWMQVMMAAMATWPEFNVDLSPELDKILRWTS
                     LFLTTPIVFYCCGQFFRGALRDLRTRHLTMDVSVSLAIGGAYVAGIWSTVTGIGELYF
                     DAVGMFALFLLAGRYLERRARERTAAATAQLVSLLPPSCLRLDERGQSQRVLLRELAI
                     GDRVLVPPGAQLPADGRILAGQSSIDESLLTGEYLPLPRGEGDAVTAGTLNVEGPLTI
                     EVGALGENTRLSAIVRLLERAQADKPRMAELADRVAQWFLLVVLGFAAVVGVVWWQID
                     SERAFWIVLA"
BASE COUNT          845 a         1667 c         1478 g          767 t
ORIGIN      
        1 ctgcgcaccc tcggcgtgcc ctataccgac gaagacatcg ccggcgcacg cgaggccgtc
       61 aagggcaaga ccgaaatgga cgcgatcgtc gcgtacctgc agggtcttgg cacagccatc
      121 aagaacaaac ggtaacgcct catggatatc gggatgattc gcggcattgg caccgcagta
      181 gtcttcatcg ccttcatcgg cgtggtgctc tgggccttca gcagcagacg caagagcagc
      241 ttcgacgaag cggccaacct gcccttcgcc gacgacgtcc cggccaagaa gcgtgacgag
      301 caagattctg ggagcaataa agaatgactt tgttctggag tatctacatc agcgtcctga
      361 gcctcggcac catcgtggct ctcactgcgc tgatcttcgg tgtgcgtaag ggccagcgcc
      421 ctgaaaccac cgaggaaacc gtcggccatg ccttcgacgg tatcgaggag ttcgacaacc
      481 cgctgccgaa gtggtggttc atgctgttcg tcggcaccat cgtcttcgcc ctcggctacc
      541 tggtcctgta cccgggcctg ggtacctgga aaggcctgct gccgggctac aacgaagccg
      601 gcgacggccg tcccttcgcc agcggcgaaa ccggctggac cggcgtgcat cagtgggaaa
      661 aggaaatggt ccgcgccgac aagcaatacg cgccgatcta cgccaagtac gcgcagatgc
      721 cgatcgagga agtggccaag gacgagcagg ccctgaagat gggcggccgc ctgttcgcct
      781 ccaactgctc ggtgtgccac ggctccgacg ccaagggcgc ctacggcttc cccaacctga
      841 ccgacaacga atggcgctgg ggcggcaagc cggaagacat caagcagacc atcatcggtg
      901 gtcgtcacgg ccagatgccg gcccaggcgc cgaccatcgg cgaggaaggc gtgcgcaacg
      961 tggccgccta cgtgctgacc gaactggccg gccgcaagct gccggaaggc gccactgccg
     1021 acgtcgccgc cggcaagcag gtcttcgaga gtgtctgctt cgcctgccac accaaggaag
     1081 gcaccggtaa caccgcgatg ggcgccccga acctgaccaa cccgagcgcg ttcatctacg
     1141 gcagcagctt cgcccagctg cagcagacca tccgttacgg ccgcagcggc aacatgcccg
     1201 cccagctgcc gtacgtgggc agcgaagaca aggtccacct gctggccgcc tacgtgtaca
     1261 gcctgtcgca cggcaacacc ggcgccaacg tcgagaagta aggctctacc ccgcccggac
     1321 gcgaccgctg gtcgcacccg ggccacgctc gatcaggcgt accatagtga cgtgaaattc
     1381 tgactcctcc ggcaagtatc ggaggagcac tcacccaagc cgtggtacac ccgatgagcg
     1441 aacagattcc cgtccgaaac atcacccctc ccccggccaa gggcggcgaa accgtcgacc
     1501 tctacgccag ccgcgaaaag atctataccc gcgccttcac cggcctgttc cgcaacctgc
     1561 gactcggcgg cggagccttt ctcttcctgc tctacttcgg caccgtctgg ctgaactgga
     1621 gcggacgcca ggccgtttgg tggaacctgc cggaacgcaa gttcttcatc ttcggcgcca
     1681 ctttctggcc gcaggacttc atcctgctct cggccctgct gatcatcgcc gccttcggcc
     1741 tgttcttcat caccgtgttc gccggccgcg tctggtgcgg ctacacctgc ccgcagagcg
     1801 tgtggacctg gatcttcatg tggtgcgaga agatcaccga gggcgaccgc aaccagcgca
     1861 tgaagctgga caaggcgccg atgagcgcca acaagttcct gcgcaagacg gccaagcacg
     1921 gcctgtggat tctcatcggc ctggtcaccg gcctgacctt cgtcggctat ttctcgccga
     1981 tccgcgagct gattcccaac ctgctcaccg gcgaggccga tggctgggcc tacttctggg
     2041 tcggcttctt caccctggcc acctacggca acgccggctg gctgcgcgag caggtgtgca
     2101 tctacatgtg cccctacgca cgcttccaga gcgtgatgtt cgacaaggac accctgatcg
     2161 tctcctacga cccgcgtcgc ggcgagcatc gcggcccgcg caagaagaac gtcgactaca
     2221 aggcccaagg cctcggcgac tgcatcgact gcaccatgtg cgtccaggtc tgccccaccg
     2281 gcatcgacat ccgcgacggc ctgcaggtcg agtgcatcgg ctgcgccgct tgcatcgacg
     2341 cctgcgacag catcatggac aagatgaact acccgcgcgg cctgatcagc tacacaaccg
     2401 aacacaatct ttccggtcag aagacccatc tgctgcgacc gcgcctgata ggctacgccg
     2461 tcgcgctggt ggcgatgatc tcgatgttcg tctgggccat cgccagccgc tcgctggtgg
     2521 aggtcgacgt gctcaaggac cgcgtgctgt tccgcgagaa cgaggaaggc cacgtcgaga
     2581 acgtctacac cgtgaagctg atgaacaagg cccagcgcga cctgacctat ctgatctccg
     2641 tcgagggcat cgacggcctc gaatacgagg gtcggcgcga agtcagggcc gcggccggcg
     2701 aagtgctgtc gctgccggtg gagctgtccg tgccgccgga gaagctgccg tccagcgcca
     2761 atgaaatcgt cttcagggtc aaggccctgg aagatccgtc catcgagagc gacgccgaca
     2821 gccgtttcat cggccccagc gtacgttgaa cacaggttcc ttcatgtcgc cgcaacaacc
     2881 cccggtcaac ccctggtaca aagaagtctg ggtctggttc atcctcggca tcctcggcct
     2941 gtccgtggtg ctcggcacca gcatgctggt gatcgccacc aagaacccgc cgggcctgct
     3001 gtcggacaac tactacgacg tcggcaaggg catcaacacc tcgctggaac gcgaagagct
     3061 ggccgagcgc ctcaagctca aggccgcctt caccctggac aacgagcgcg gcaccgtcag
     3121 cctgcaactg gacggctaca gcaacccgcc gcaactggtg ctcaacctga tctcgccgac
     3181 ccagccggag cgtgaccgcc gggtgatcct gcagccccag ggcgacggca gctacgccgg
     3241 caacctgctg gatgccgtcg agggtcgccg cttcgtcgag ctgatcggtc aggaaggcgg
     3301 caaggactgg cgcctgttcg aggaaaagca actggccagc ggccagcgct tccagctcgg
     3361 cgagtaagcc cgcgcgcatg agcagccccc ttccctgcta ccactgcggc ctgccggtcc
     3421 ctgccggcag ccgtttcgag gcccgcgtcc tggatcagcc gcgggccttc tgctgtccgg
     3481 gctgccaggc ggtggccgag gccatcgtcg ccggcggact ggacggctac taccgtcacc
     3541 gcagcgacag cgccatcaac ccgcagacgc tgcccaaggc gctgccggac gaactggcgc
     3601 tgtacgaccg cgacgaggtg cagcgcaact tcgtcgaaca ccagggcgag ctcagcgaga
     3661 cgcgcctgct gatcgagggc atcagctgcg ccgcctgcgg ctggctgatc gagaaacacc
     3721 tgcgcagcct gccgggcgtg accgaggcca gcctcaacct gtccaaccag cgcctgcagg
     3781 tgcgctgggc cgacagccag atcccgctca gccagctgct cgccgagctg cgccgcatcg
     3841 gctacgccgg ccacccctgg caggacgacg aggccagcgc gcgcctggcc gaggagaacc
     3901 gccgttcgat gcgccagatc ggcgtcgccg gcctgctgtg gatgcaggtg atgatggcgg
     3961 ccatggccac ctggccggag ttcaacgtcg acctctcgcc ggagctggac aagatcctgc
     4021 gctggaccag cctgttcctc actaccccta tcgtcttcta ttgctgcggc cagttcttcc
     4081 gcggcgccct gcgcgacctg cgcacccgcc acctgaccat ggacgtctcg gtgtcgctgg
     4141 ccatcggcgg cgcttacgtg gccggtatct ggtccaccgt caccggcatc ggcgagctgt
     4201 acttcgacgc ggtcggcatg ttcgccctgt tcctgctggc cggccgctac ctggaacgtc
     4261 gcgcccgcga gcgcacggcg gcggccaccg cgcagctggt cagcctgctg ccgccttcgt
     4321 gcctgcgcct cgatgagcgc ggccagagcc agcgcgtgct gctgcgcgaa ctggcgatcg
     4381 gcgaccgtgt gctggtgcca ccgggcgccc agctgccggc ggacggccgc atcctcgccg
     4441 gccagtcgag catcgacgag tcactgctca ccggcgaata cctgccgctg ccgcggggcg
     4501 aaggcgacgc cgtcaccgcc ggcacgctca atgtcgaggg gccgctgacc atcgaggtcg
     4561 gcgccctggg tgagaacacc cggctgtccg ccatcgtgcg cctgctcgag cgcgcccagg
     4621 ccgacaagcc gcgcatggcc gaactggccg accgggtggc ccagtggttc ctgctggtgg
     4681 tgctgggctt cgccgccgtg gtcggtgtgg tctggtggca gatcgacagc gagcgcgcct
     4741 tctggatcgt cctcgcc
//
LOCUS       DATIHC010000833         1567 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_45487, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000833 DATIHC010000000
VERSION     DATIHC010000833.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1567
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45487"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1139
                     /locus_tag="VLF16_13925"
     CDS             <1..1139
                     /locus_tag="VLF16_13925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HSX72023.1"
                     /translation="STLLPGPFASLLLADMGAEVLRIESPTRTDLVRVLPPHVDGVST
                     SHAYLNRNKRCLALDLKKPEALAVVKRLVAEYDIVLEQFRPGVMDKLGLGYEALKAIN
                     PRLIYVSITGYGQTGPYRDRAGHDLNYLALSGLASYTGRRDSGPLPLGVQVADIAGGS
                     LHGVIGLLAAVIARQSTGQGQQVDISMTDCAFSLHAMAGAGYLAGGVEPDMQNQVLNG
                     GSFYDYYRTRDGRWLSVGSLEPQFMQQFCAALGRPELAALGLSPKDQQRLKDEIAVEV
                     EKHDLAEWQQRFAEVDACIEPVLKLSEAVEHPQLKTRGVVTEVPREGKAAQRQIACPI
                     RFSEGLAPPRHIGAPVGAHNDEVLRELGYGDEAIAALRASRALG"
     gene            1205..1402
                     /locus_tag="VLF16_13930"
     CDS             1205..1402
                     /locus_tag="VLF16_13930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72024.1"
                     /translation="MLKFSETVEHTQLQARGLVIGMLRELGYGAEEIAALGPAGRWGS
                     PEVIRERGRFPDCIRATKLSR"
BASE COUNT          262 a          511 c          556 g          238 t
ORIGIN      
        1 tctccaccct gctgccgggg cctttcgcct cgctgctgct ggcggacatg ggcgccgagg
       61 tgctgcgcat cgagtcgccg acccgcacgg acttggtgcg cgtgctgccg ccgcatgtgg
      121 atggcgtctc caccagtcac gcctacctca accgcaacaa gcgctgcctg gcgctggacc
      181 tgaagaagcc cgaggcgctg gcggtggtga agcgcctggt ggccgagtac gacatcgtcc
      241 tcgagcagtt tcgccccggc gtgatggaca agctcggcct cggctacgag gcgctgaagg
      301 cgatcaatcc gcggctgatc tatgtctcca tcaccggcta cggccagacc gggccgtaca
      361 gggatcgcgc cggccacgac ctcaactacc tggccctgag cggcctggcc agctacaccg
      421 ggcgccgcga cagcggcccg ttgccgctcg gcgtgcaggt ggcggacatt gccggtggct
      481 cgctgcatgg cgtgatcggc ctgctcgcgg cggtgatcgc gcggcagagc acggggcagg
      541 gccagcaggt ggacatcagc atgaccgact gcgccttcag cctgcatgcc atggccggcg
      601 ccggctacct ggccggcggc gtggagccgg acatgcagaa ccaggtgctc aacggcggca
      661 gcttctacga ctactaccgc acccgcgacg gccgctggct gtcggtgggc agcctggaac
      721 cgcagttcat gcagcagttc tgcgccgccc tcggccgtcc ggagctggcc gcgctcggcc
      781 tgtcgccgaa ggaccagcag cggctcaagg acgagatcgc cgtcgaggtg gaaaaacatg
      841 acctggccga atggcaacaa cgcttcgccg aagtggatgc ctgcatcgag ccggtgctga
      901 agctgtccga ggcagtcgag catccgcagc tcaagacacg cggcgtggtc accgaggtcc
      961 cccgcgaggg caaggccgca cagcggcaga tcgcctgccc gatccgcttc tccgaaggcc
     1021 tggcgccgcc gcgccacatc ggcgcacctg tgggtgcgca taacgacgag gtgctgcgcg
     1081 aactgggcta cggcgatgaa gcaatcgccg cgctgcgggc cagcagagcg ctggggtagc
     1141 ccggtgtgaa atccgggata tcggcctcgc tcccggattt catccgggct acgaagttga
     1201 gccggtgctg aaattctccg agacggtcga acatactcag ctgcaggcgc gcggcttggt
     1261 tatcggcatg ctgcgcgaac tgggctacgg cgccgaagaa atcgcggcgc tggggccggc
     1321 agggcgctgg ggtagcccgg aggtaatccg ggagcgaggc cggttcccgg attgcatccg
     1381 ggctacgaag ttgagccggt gatgaaattc gccgaggcgg tcgaacatgc tcagctgcag
     1441 gcgcgcggct tggttaccgg catgctgcgc gaactgggat acggcgacga agaatcgccg
     1501 cgctgccggc cggcagggcg ttggggtagc ccggacgaaa tccgggagcg aggccgatat
     1561 cccggat
//
LOCUS       DATIHC010000834         2163 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_15303, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000834 DATIHC010000000
VERSION     DATIHC010000834.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15303"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..649
                     /locus_tag="VLF16_13935"
     CDS             <1..649
                     /locus_tag="VLF16_13935"
                     /EC_number="1.1.1.169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009044960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008677 - 2-dehydropantoate 2-reductase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HSX72025.1"
                     /translation="ARVVLLQNGLGVEDRLRPLLPDSLHLLGGLCFICVHRSAPGVIE
                     HQALGAVNLGYHSGPPELDEARAIVEEGAELFRSAGIESVAMADLQQARWQKLVWNVP
                     YNGLSVLLNAGTRRLMDSADSRALILELMREVARGAAACGQTLPEGYPEQLLAATDRM
                     PDYLPSMYHDFRHGRPAELEAIYEAPLAAAAAAGCELPKMRMLLQALRFLEAARG"
     gene            738..1223
                     /locus_tag="VLF16_13940"
     CDS             738..1223
                     /locus_tag="VLF16_13940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017516903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HSX72026.1"
                     /translation="MLRSILYATDLGLYAPYVLQHALALAKAFQAELYVVHAVEPMGL
                     FAESVLQTYLDETTLQELRSKGLATVMASIEQRVLEGFRDEMGEAQQDMQMIRSVRVV
                     QGDPAQVIVEEAGKLGVDLLVVGSHSHGAAQDIPLGRTAARVLQLSDKPVYLVPMLQH
                     R"
     gene            1356..>2163
                     /gene="cysB"
                     /locus_tag="VLF16_13945"
     CDS             1356..>2163
                     /gene="cysB"
                     /locus_tag="VLF16_13945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator CysB"
                     /protein_id="HSX72027.1"
                     /translation="MKLQQLRYIWEVAHHDLNVSATAQSLYTSQPGISKQIRLLEDEL
                     GVEVFARSGKHLTRVTPAGERIITTAGEILRKVESIKQIAQEFSNEKKGTLSIATTHT
                     QARYALPAVISGFIKQYPEVALHMQQGTPTQIAEMAADGTVDFAIATEGLELFNDLVM
                     MPCYRWNRCVIVPQGHPLTKLPKLTLEALAEHPIVTYVFGFTGRSKLDEAFSHKGLSP
                     KVVFTAADADVIKTYVRLGLGVGIVAGMAVDPKLDSDLAVLDASELFEASV"
BASE COUNT          385 a          691 c          712 g          375 t
ORIGIN      
        1 cgcccgggtg gtgctgctgc agaatggcct gggcgtagag gaccggttgc gaccgctgct
       61 gcccgactcg ctgcatctgc tcggcgggct ctgcttcatc tgcgttcaca ggtccgctcc
      121 cggggtcatc gagcaccagg ccctcggtgc cgtgaacctg ggctatcact caggcccgcc
      181 ggagctggac gaagcgcggg cgattgtcga ggagggtgcc gagctgtttc gctcggccgg
      241 tatcgagtcc gtcgccatgg ccgacttgca gcaggcgcgc tggcagaagc tggtgtggaa
      301 tgttccgtac aacggcctct cggttttgct gaatgccggc acccggcgcc tcatggacag
      361 cgccgacagt cgtgcgctga ttctcgagct gatgcgcgaa gtggcccgcg gcgccgcggc
      421 gtgcgggcag acactgccgg agggctaccc ggagcagctg ctggccgcca ccgaccggat
      481 gcccgactac ctgcccagca tgtaccacga ctttcgccat ggccgcccgg cggaactcga
      541 ggccatctac gaggcgccac tggcggccgc tgcggcggcg ggatgcgagt tgccgaagat
      601 gcgcatgctg ctgcaggcat tgcgatttct cgaggccgct cggggctgat cgagcagggc
      661 cggatggcgg gtgactcgag aagtccgccg aggcgctgct aagctcagcc taggtccagc
      721 agtctcagga cggccccatg ctgcgttcca ttctctatgc caccgatctc gggttgtacg
      781 cgccgtacgt gctgcagcac gctttggcgc tggccaaggc gttccaggcc gagctgtatg
      841 tcgtgcacgc ggtggagccg atgggcctgt tcgccgaatc ggtgctgcag acctacctgg
      901 acgagacgac cctgcaggag ttgcgcagca aggggctcgc caccgtgatg gccagcatcg
      961 agcagcgcgt gctggagggt tttcgcgatg aaatgggcga ggcccagcag gacatgcaga
     1021 tgatccgcag cgtacgcgtc gtacagggcg acccggccca ggtgattgtc gaggaggccg
     1081 ggaaactcgg cgtcgatctg ctggtcgtag gcagtcacag ccatggcgca gcgcaggaca
     1141 tccccctggg caggaccgcg gcacgcgtac tgcagctgtc ggacaagccg gtctatctgg
     1201 tgcccatgct gcagcaccgc tagcggcggg tttgccaagc gctggacgaa cggcatgcat
     1261 cgctcagaaa atcgtctagc tttaatcact gaaccaataa tatggttata tcgcccacgg
     1321 gcgtcggcag cgcttttctg ctttgaggga cctctatgaa gctgcagcaa ctgcgctaca
     1381 tctgggaagt agcgcatcac gatctcaacg tctctgccac cgcgcagagc ctctatacct
     1441 cgcaacccgg catcagcaag cagatccgcc tgctggaaga cgagctgggt gtcgaagtct
     1501 tcgcccgcag cggcaagcac ctgacccgcg tgacgccggc cggcgaacgg atcatcacca
     1561 ccgctggcga gatcctgcga aaggtcgaga gcatcaaaca gatcgcccag gaattctcca
     1621 acgagaagaa gggcaccctg tccatcgcga cgacccacac ccaggcccgc tatgcgctgc
     1681 cggcggtgat cagcggtttc atcaagcaat atcccgaggt ggccctgcac atgcagcagg
     1741 gtacgccgac ccagatcgcg gagatggcgg cggacggcac cgtggacttc gccatcgcca
     1801 ccgagggcct ggagctattc aacgacctgg tgatgatgcc gtgctaccgc tggaaccgct
     1861 gtgtgatcgt gccccagggc catccgctga ccaagctgcc gaagctgacc cttgaggcgc
     1921 tggccgagca tccgatcgtc acctatgtat tcggcttcac cggccgctcc aagctcgacg
     1981 aggccttcag ccacaagggg ctgtcgccca aggtggtatt caccgcggcc gatgcggacg
     2041 tgatcaagac ctatgtgcgg ctggggctgg gtgtcggcat cgtcgcgggc atggcggtcg
     2101 accccaagct cgacagcgac cttgcggttc tcgacgccag cgagctgttc gaggccagcg
     2161 tca
//
LOCUS       DATIHC010000835         3527 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_13963, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000835 DATIHC010000000
VERSION     DATIHC010000835.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3527
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13963"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..970
                     /locus_tag="VLF16_13950"
     CDS             <1..970
                     /locus_tag="VLF16_13950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016561779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ferrous iron transporter B"
                     /protein_id="HSX72028.1"
                     /translation="REIKQALAANGGYEAPRSLLKELLYLVALADTRGPQASAVRDVF
                     GLTALPFTDHLLDEEYQRLSGPGQGVMRSLSTAIREELASVKDLLELIERGTAQPESF
                     GNLHALLGKLAKTLSMVGLSSAANALQVQLPVVGGWSEEAPAAGTDLHKLAEAVLYVE
                     SMVASLERGEQRNARPAPVAPGDEGEAFAAHQLAEARIVVVDEAQGGLALAKRAITSY
                     LESNGDKLHLANVPFSLQAVRGGLWFLGQERAARLIGLCGDYIQTQMVDARQMPSEQM
                     LETLADALSSLEYYLEGGAVLRPETTPSVLDLAEESVRALGMPVAA"
     gene            970..1803
                     /gene="nudC"
                     /locus_tag="VLF16_13955"
     CDS             970..1803
                     /gene="nudC"
                     /locus_tag="VLF16_13955"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011334291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000210 - NAD+ diphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HSX72029.1"
                     /translation="MASGWQTTPPLNNDQAGGWALVRSPQGFLADGNGVLFPREWLKR
                     QELSLLAEHGLGHFDGEPVWLLTLDRPAEMPGCFWQGLRQFMLQADYPTFRMLSFAEQ
                     VGHWDLNHRFCGRCGSRNRQVPGERCMRCPDCGLDSYARISPSMIVLVTRGDEMLLAR
                     SPRFVSGVYSTLAGFVEPGESAEECVAREVREEVGIEVGAPQYLGSQSWPFPHSLMLG
                     FHVEYLSGEIVPQADEIEDARWFPIDQLPPLPMSRSIARYLIDLYVARRLGQPEPELL
                     R"
     gene            complement(1805..2170)
                     /locus_tag="VLF16_13960"
     CDS             complement(1805..2170)
                     /locus_tag="VLF16_13960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018929431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase superfamily protein"
                     /protein_id="HSX72030.1"
                     /translation="MRLAKTTPILRIFDEAKTREFYVDYLGFRVDWEHRFAPGMPLYL
                     QVSRDGCVLHLSEHHGDACPGAAMRIETDGLDEFHRELEQKDYGYARPGIEAMPWGSR
                     DMSVRDPFGNRLTFTDAVG"
     gene            complement(2187..2963)
                     /locus_tag="VLF16_13965"
     CDS             complement(2187..2963)
                     /locus_tag="VLF16_13965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017360753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HSX72031.1"
                     /translation="MPFPFELAVDPTTLLILAIVAFIAGFIDAIAGGGGLLTIPALLT
                     AGLPPHLVLGTNKLCATFGSATASYTFYRRKLFSPRQWRNALIATAVGAAIGAIIAHW
                     LPADWLNQMLPAVVFGCGLYLLFGKMPETHGQHDAPVAQGRQWPQGFGLGFYDGVAGP
                     GTGAFWTVSTLLLYPMDLVRASGVARSMNFVSNAMALTVFIIAGQVAWVLGISMGLAL
                     MAGAFFGARTAISGGSKFIRPVFILVVLALTARLAWQHWF"
     gene            3064..>3527
                     /locus_tag="VLF16_13970"
     CDS             3064..>3527
                     /locus_tag="VLF16_13970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003239994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72032.1"
                     /translation="MQYDGLAWFTGLLALLALFVAARILFAPNWFLAWLRGTLGLAVL
                     AVALLVGVVAYDLRSYDAQVRDKPLVTLSFAAEGAQRYRVNLLEGGEERQVLLEGDLW
                     QLDARLLGWKGLAALIGLEPGYRLEKLSGRFLAIEQQETARHAEVQLAQSPYG"
BASE COUNT          554 a         1162 c         1235 g          576 t
ORIGIN      
        1 tcgcgagatc aagcaggccc tggccgccaa tggcggctac gaggcgccgc gcagcctgct
       61 caaggagctg ctctatctgg tggctctggc tgacacccgc ggcccgcagg ccagcgccgt
      121 gcgcgacgtg ttcggcctga ccgcgctgcc gttcaccgat cacctgctcg acgaggaata
      181 ccagcgcctg tccggccccg gtcagggcgt gatgcgttcg ctgtccaccg ccatccgcga
      241 ggaactggcc agcgtcaagg acctgctcga gctgatcgag cgcggcaccg cccagccgga
      301 gagcttcggc aatctgcacg cgctgctcgg caaactggcc aagaccctca gcatggtcgg
      361 gctcagctcg gcggccaacg cgctgcaggt gcagctgccg gtggtaggtg gctggagcga
      421 agaagccccc gccgccggta ccgatctgca caagctggcc gaggcggtgc tttacgtgga
      481 aagcatggtc gccagcctcg aacgtggcga gcagcgtaac gcgcggccgg cgccggtggc
      541 cccgggcgac gagggcgagg cctttgccgc gcaccagctg gccgaagcgc gcatcgtggt
      601 ggtcgacgag gctcagggcg gcctggccct ggccaagcgc gccatcactt cctacctcga
      661 atccaacggc gacaagctgc acctggccaa cgtgcccttc agcctgcagg cggtgcgcgg
      721 cggtctgtgg ttcctcggcc aggagcgtgc ggcccggctg atcggcctgt gcggcgacta
      781 catccagacg cagatggtcg atgcccggca gatgccgtcc gagcagatgc tggaaaccct
      841 ggccgacgcc ctcagcagcc tggagtacta cctcgagggt ggtgccgtgc tgcgtcccga
      901 gaccacgccg agcgtgctcg acctggccga ggaaagcgtg cgcgccctgg gcatgccggt
      961 agctgcgtga tggcttccgg ctggcagacc acgccaccgc tgaacaatga ccaggccggc
     1021 ggctgggcgc tggtgcgcag cccgcagggc tttctcgccg acggcaacgg cgtgctcttt
     1081 ccccgcgaat ggctcaagcg tcaggagctg tcactgctgg ccgagcacgg cctcggccat
     1141 ttcgacggcg agccggtgtg gctgctgacc ctggaccgcc cggccgagat gcccggctgc
     1201 ttctggcagg gcctgcgcca gttcatgctg caggccgact atccgacctt ccgcatgctg
     1261 tcgttcgccg agcaggtcgg tcactgggat ctcaaccacc gtttttgcgg ccgctgtggc
     1321 agccgcaacc gtcaggtgcc gggcgagcgc tgcatgcgct gcccggactg cggcctggac
     1381 agctacgcac gtatctcgcc gagcatgatc gtgctggtca cccgcggtga cgagatgttg
     1441 ctggcccgtt cgccacgctt cgtctccggg gtttacagca ccctggccgg cttcgtcgag
     1501 ccgggcgagt cggcggaaga atgcgtggcc cgcgaggtgc gcgaggaagt cggcatcgag
     1561 gtcggcgccc cgcagtacct gggcagccag agctggccct tcccgcattc gctgatgctg
     1621 ggctttcacg tcgagtacct cagcggcgag atcgtgcccc aggccgacga gatcgaggac
     1681 gcccgctggt tccccatcga ccagctgccg ccgttgccga tgtcgcgctc gatcgcccgc
     1741 tatctgatcg atctctacgt cgcccgtcgc ctcggccagc cggagcccga gctgctgcgc
     1801 tgattcagcc gaccgcgtcg gtgaaggtca ggcggttgcc gaaggggtcg cgcacgctca
     1861 tgtcgcggct gccccagggc atggcttcga ttcccgggcg cgcatagccg tagtccttct
     1921 gctccagctc acgatgaaac tcgtccaggc cgtcggtctc gatgcgcatt gccgcgccgg
     1981 ggcaggcgtc gccgtggtgt tcggacaggt gcagcacgca gccgtcgcgc gacacctgca
     2041 ggtacagcgg catgccgggg gcgaagcggt gctcccagtc gacacggaag cccaggtagt
     2101 ccacatagaa ttcccgggtc ttggcttcgt cgaagatgcg caggatcgga gtcgtcttgg
     2161 cgagtcgcat ggtgaaaatt ccttttttag aaccagtgtt gccaggctag gcgcgcggtc
     2221 agcgccagca ccacgaggat gaacaccggg cggatgaatt tggagccgcc gcttatcgcc
     2281 gtgcgcgcgc cgaagaaggc gccggccatc aatgccaggc ccatgctgat gccgagcacc
     2341 caggccacct ggccggcgat gatgaatacg gtgagggcca tggcgttgct gacgaagttc
     2401 atgctgcgcg ccacgccgct ggcgcgcacc aggtccatgg ggtagagcag cagggtgctc
     2461 accgtccaga acgcgccggt gcccgggccg gccacgccgt cgtagaagcc caggccgaag
     2521 ccctggggcc attgccggcc ctgggccacg ggagcgtcgt gctggccatg ggtttccggc
     2581 atcttgccga acagcaggta gagaccgcag ccgaatacca cggctgggag catctggttg
     2641 agccagtccg ccggcagcca gtgggcgatg atggcgccta tggccgcgcc caccgccgtg
     2701 gcgatcaacg cgttgcgcca ttgccgcggc gagaacagct tgcgccggta gaaggtgtag
     2761 ctggcggtcg ccgagccgaa ggtggcgcac agcttgttgg tgcccagcac cagatgcggc
     2821 ggcaggccgg cggtgagcag ggcgggaatg gtcagcaggc cgccgccgcc ggcgatggcg
     2881 tcgatgaatc cggcgatgaa ggcgacgatg gcgaggatca gcagggtggt cgggtctacg
     2941 gccagctcga aggggaaggg cataaaaaac tcgaagtggg ttcaattgtg cggggccatc
     3001 gctggtccac cgcacagtgg ctgagcataa tgccggcaaa aaatcgcaga aggaatcgct
     3061 tccatgcagt atgacggcct ggcctggttc accggcctgc tggccctgct ggccctgttc
     3121 gttgccgccc gtatcctgtt cgcgcccaac tggttcctcg cctggctgcg cggcaccttg
     3181 ggcctggccg ttctcgccgt ggcgctgctg gtcggtgtgg tggcctatga cttgcgcagc
     3241 tacgacgcgc aggtgcgcga caagccgctg gtgaccctga gcttcgccgc cgagggtgcg
     3301 cagcgctacc gcgtaaacct gctggagggc ggcgaggagc gtcaggtact gctggagggc
     3361 gacctctggc agctggatgc ccggctgctg ggctggaagg gcctggcggc gctgatcggc
     3421 ctggaaccgg gctatcgtct ggaaaagctc tcgggccgtt tccttgccat cgagcagcag
     3481 gagaccgccc gtcacgccga ggtacagctg gcgcagagcc cctacgg
//
LOCUS       DATIHC010000836         1786 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_22154, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000836 DATIHC010000000
VERSION     DATIHC010000836.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1786)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1786)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1786
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22154"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            87..458
                     /locus_tag="VLF16_13975"
     CDS             87..458
                     /locus_tag="VLF16_13975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003253236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein EutQ"
                     /protein_id="HSX72033.1"
                     /translation="MSEAISGKGPVLLVDHRDLDFLPRGGPPGAAFVARAIGNDVSPH
                     IGIGFARWEGAEVEWTLLYDEVVFVIEGCFELRANGELYRVAPGQLLWIPEGTTLVYG
                     GHALFGYVVHPGDWKQRHGLA"
     gene            502..1785
                     /locus_tag="VLF16_13980"
     CDS             502..1785
                     /locus_tag="VLF16_13980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSX72034.1"
                     /translation="MLGLTRTFGALYLASLLMQMGSTLLMTYLALRLSADGVAAFWGG
                     ALMAANALGMVVGGKVGQLLIERVGHIRTYVASAGVISAAVLAHEFSDSLSFWLALRI
                     LVGMGMMCQLMVLESWLNDRAASQDRGKVLGIYMLATYVGMVLGQLGLSLNGDLGVHA
                     LLAVAMAFALCLVPVALTRISHPATLQAARVDIGLFVRRVPQSLITVTMAGMIYSAFF
                     GLAAIYASRQGLDTTQVGQLMALTIGAGLLAQLPLGWLSDRLPRASLIRGVAIGLVLI
                     YLPLALLDTPSFGVLMLVGACIGFLQFCLYPLGVALANDNVEAELRVSLAGLLLAAYG
                     VGACIGPLLAGAAMEHFGASSLYYFSAGCAALLALVVSQAKVTGEHLQSDAPLHHQAT
                     PIGLASSPLAAAIEPVVVEVPVDDPAADDAPPGTP"
BASE COUNT          230 a          610 c          622 g          324 t
ORIGIN      
        1 ccgtcgctga atccgccgga acccttcctg ggcctgggcg tgcgctcgcg catccgcctg
       61 gcggcctgga acagcaggag tgaaatatga gcgaggccat ttccggcaag gggccggtgc
      121 tgctggtcga tcaccgcgac ctggactttc tgccgcgagg cgggccgccc ggtgcggcct
      181 tcgtcgcgcg ggccatcggc aacgacgtct cgccgcacat cggcatcggc ttcgcccgct
      241 gggagggcgc ggaagtggag tggacgctgc tctacgacga ggtggtcttc gtcatcgaag
      301 gctgcttcga gctgcgtgcc aacggcgagc tgtaccgggt cgcgccgggg caattgctgt
      361 ggattcccga aggcaccaca ctcgtctatg gcggccacgc gctgttcggc tacgtggtcc
      421 accccggcga ctggaagcag cgccacggcc tggcctgacc gccgcattcc tccgcagccc
      481 attcccctat agagagacgc catgctcggc ctgaccagaa ccttcggtgc gttgtacctg
      541 gccagtctgc tgatgcagat gggctcgacg ttgctgatga cctatctggc gctgcgcctc
      601 agtgccgatg gcgtcgccgc gttctggggc ggcgcgctga tggccgccaa cgcgctgggc
      661 atggtggtcg gcggcaaggt cggccagctg ctgatcgagc gggtagggca tatccgcacc
      721 tacgtggcca gcgccggggt gatttccgcc gccgtgctgg cccatgaatt cagcgactcg
      781 ctgtcgttct ggctggcact gcgcatcctc gtgggcatgg gcatgatgtg ccaactgatg
      841 gtgctggaga gctggctgaa cgaccgcgcc gccagccagg atcgcggcaa ggtgctgggc
      901 atctacatgc tggcgaccta cgtcggcatg gtgctcggcc aactgggcct gagcctcaat
      961 ggcgatctcg gcgtgcacgc gctgctcgcc gtggccatgg cgttcgccct gtgcctggtg
     1021 ccggtcgcgc tgacccgcat cagtcacccc gcgaccttgc aagcggcgcg cgtcgacatc
     1081 gggctgttcg tccgccgcgt gccccagtcg ctgatcaccg tgaccatggc cggcatgatc
     1141 tacagcgcgt tcttcggcct ggcggccatc tacgccagcc gccaggggct ggacaccacc
     1201 caggtcggcc agctgatggc gctgaccatc ggcgccgggc tgctggccca gctgccgctg
     1261 ggctggctct ctgaccgcct gccgcgcgcc agcctgatcc gcggcgtggc catcggcctg
     1321 gtgctgatct acctgccgct ggcgctgctg gatacgccgt cgttcggcgt gctgatgctg
     1381 gtgggggcgt gtatcggctt cctgcagttc tgcctgtatc cgctgggcgt ggccctggcc
     1441 aacgacaacg tcgaggccga gctgcgcgtc tcgctggccg gcctgctgct ggcggcctac
     1501 ggcgtcggcg cctgcattgg cccgttgctc gccggcgcgg cgatggagca tttcggcgct
     1561 tccagcctgt attacttctc ggccggctgc gccgccctgc tggcgctggt ggtgagccag
     1621 gcgaaggtga ccggcgagca tctgcaaagc gatgcgccgc tgcatcacca ggcgacgccc
     1681 atcggcctcg ccagctcgcc gctggcggcc gccatcgaac cggtggtggt cgaggtgccg
     1741 gtggacgatc cggccgcgga cgatgcacca cccggcacgc catgag
//
LOCUS       DATIHC010000837         2195 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_22164, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000837 DATIHC010000000
VERSION     DATIHC010000837.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2195
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22164"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            15..827
                     /gene="rsmA"
                     /locus_tag="VLF16_13985"
     CDS             15..827
                     /gene="rsmA"
                     /locus_tag="VLF16_13985"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003463530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HSX72035.1"
                     /translation="MSEYQHRARKRFGQNFLHDAGVIHRILRAIHAKEGERLLEIGPG
                     QGALTEGLLGSGAQLDVIELDLDLIPILQGKFGDNPRFKLNQGDALKFDFARLDAAPH
                     SLRVVGNLPYNISTPLIFHLLDNAPLIRDMHFMLQKEVVERLAAEPGGGDWGRLSIMV
                     QYHCRVEHLFNVGPGAFNPPPKVDSAIVRLVPHETLPHPAKDHRLLERVVREAFNMRR
                     KTLRNTLKQLLPNEAIEAAGVDGGLRPEQLDLAAFVRLADQLAERQAADPAD"
     gene            859..1239
                     /gene="apaG"
                     /locus_tag="VLF16_13990"
     CDS             859..1239
                     /gene="apaG"
                     /locus_tag="VLF16_13990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005768068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Co2+/Mg2+ efflux protein ApaG"
                     /protein_id="HSX72036.1"
                     /translation="MADPRYQIDVSVETRYLPEQSTPEQNRYAFAYTVTLHNGGSEAA
                     KLLSRHWVITDGDGRVQEVRGAGVVGQQPHLEPGQSHTYSSGTVMATKVGNMHGSYQM
                     VADDGKRFDAIIAPFRLAVPGALH"
     gene            1239..2060
                     /locus_tag="VLF16_13995"
     CDS             1239..2060
                     /locus_tag="VLF16_13995"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008027057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008803 -
                     bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="symmetrical bis(5'-nucleosyl)-tetraphosphatase"
                     /protein_id="HSX72037.1"
                     /translation="MATYAVGDLQGCLQPLKCLLQRVVFDPQRDTLWLVGDLVNRGPE
                     SLETLRFLYSIRDSLVCVLGNHDLHLLAAAHNIERLKKNDTLQEILDAPDRRDLLEWL
                     RLQKLMHYDEQRDIAMVHAGIAPQWTLKKALKRAAEVEEVLRDDARLPLFLDGMYGNE
                     PAKWDSDLHGVTRLRVITNYFTRMRFCTEDGTLDLKSKEGLDSAPPGYAPWFSWPSRK
                     ARGQKIIFGHWAALEGKCDEPGLSALDSGCVWGGTMTLMNVDSGERHLCSCEDLK"
     gene            2057..>2195
                     /locus_tag="VLF16_14000"
     CDS             2057..>2195
                     /locus_tag="VLF16_14000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HSX72038.1"
                     /translation="MSEFKRIPPEQAQALREQGAVVVDIRDPQSFANGHISGSRHLDN
                     HS"
BASE COUNT          412 a          773 c          688 g          322 t
ORIGIN      
        1 ctggagccgt atcgatgtcc gaataccaac accgcgcacg caagcgcttc ggccagaact
       61 tcctgcacga tgccggggtg atccatcgca tcctgcgcgc catccatgcc aaggagggcg
      121 agcgcctgct ggagatcggc ccgggccagg gcgcgctgac cgaaggcctg ctcggcagcg
      181 gcgcgcaact cgacgtgatc gaactggacc tcgacctgat ccccattctg cagggcaagt
      241 tcggcgacaa cccgcgcttc aaactcaacc agggcgacgc gctgaagttc gacttcgccc
      301 gcctggacgc cgcaccgcac agcctgcgtg tggtcggcaa cctgccttac aacatctcca
      361 ctccgctgat cttccatctg ctggacaacg ccccgctgat ccgcgacatg cacttcatgc
      421 tgcagaagga ggtcgtagaa agactggccg ccgagccggg tggcggagat tggggccggc
      481 tgtcgatcat ggtccagtac cactgccggg tggagcacct gttcaacgtc ggcccggggg
      541 ccttcaaccc gccgccgaag gtcgactcgg ccatcgtccg cctggtgccg cacgagacgc
      601 tgccacaccc ggccaaggac caccgtctgc tcgaacgggt ggtgcgcgag gcgttcaata
      661 tgcgacgcaa gaccctgcgc aacacgctca agcagttgct gccgaacgaa gccatcgaag
      721 ccgccggcgt ggatggcggg ttacgcccgg agcagctgga cctggccgcc ttcgtgcgtc
      781 tggccgatca gttggccgaa cgccaggccg ccgacccggc ggactaaact gccctttcag
      841 cctgtcgagt tcttgcagat ggccgacccg cgttaccaga tcgacgtcag cgtcgagacc
      901 cgctacctgc ccgagcaatc cacgcccgag cagaaccgct acgccttcgc ctacaccgtg
      961 accctccata acggcggcag cgaggcggcg aaactgctca gccgccactg ggtcatcacc
     1021 gacggcgacg gccgcgtgca ggaagtgcgc ggcgccggcg tggtcggcca gcagccgcac
     1081 ctggagccgg gccagagcca cacgtacagc agcggcaccg tgatggcgac caaggtcggc
     1141 aacatgcacg gcagctacca gatggtcgcc gacgacggca aacgcttcga cgccatcatc
     1201 gcgccgttcc gtctggccgt gcccggagcg ctgcactgat ggccacgtac gcggtgggcg
     1261 acctgcaggg ctgcctgcag ccgctgaaat gcctgttgca gcgggtcgtc ttcgatccgc
     1321 agcgggacac gctgtggctg gtcggcgatc tggtcaaccg cggcccagaa tcgctggaaa
     1381 ccttgcgctt cctctattcg atccgcgatt cgctggtctg cgtattgggc aatcacgacc
     1441 tgcacctgct ggccgccgct cacaacatcg agcgcctgaa gaagaacgac accctgcagg
     1501 agatcctcga cgccccggac cgccgcgacc tgctggaatg gctgcgcctg cagaagctca
     1561 tgcactacga cgagcagcgc gacatcgcca tggtccacgc cggcattgca ccgcaatgga
     1621 cgctgaagaa ggcgctcaag cgcgccgccg aggtcgagga agtgctgcgc gacgatgcgc
     1681 gcctgccgct gttcctcgac ggcatgtacg gcaacgagcc ggccaaatgg gacagcgacc
     1741 tgcacggcgt cacccgcctg cgggtgatca ccaactactt cacccgcatg cgcttctgca
     1801 ccgaggacgg caccctcgac ctgaagagca aggaagggct ggacagcgct ccgcccggct
     1861 acgcgccctg gttctcctgg ccgagccgca aggcccgcgg ccagaagatc atcttcggcc
     1921 actgggcggc gctggaaggc aagtgcgacg agcccggcct gtccgccctg gacagcgggt
     1981 gcgtgtgggg cggcaccatg accctgatga acgtcgacag tggcgaacgc cacctgtgca
     2041 gctgcgagga cctgaaatga gcgaattcaa acgcatcccc cccgagcagg cgcaggccct
     2101 gcgcgaacag ggcgccgtgg tggtcgacat ccgcgatccg cagagcttcg ccaacggtca
     2161 catcagcggc tcccgccacc tggacaacca cagcc
//
LOCUS       DATIHC010000838         5170 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_1396, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000838 DATIHC010000000
VERSION     DATIHC010000838.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5170
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1396"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..318)
                     /locus_tag="VLF16_14005"
     CDS             complement(<1..318)
                     /locus_tag="VLF16_14005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72039.1"
                     /translation="MLRVALLVMTLLLGACAGHTPVPASSPALSATLPISLQIERTQN
                     AEQRDWLLVIQAEGEALRWSLFDPLGVPLARQLLEHGEWRNDGLLPPNAEARELFAAL
                     LFAL"
     gene            complement(318..1028)
                     /locus_tag="VLF16_14010"
     CDS             complement(318..1028)
                     /locus_tag="VLF16_14010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013789578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HSX72040.1"
                     /translation="MERAAPTYVEETRFGFWFLQSHVWQHHVLRVAINDLKRLIDAPL
                     PQAPVLLDAGCGQGRSFGLLNEAFAPARMIGLDADPHSLDCSRAEAERLGLDVQLIAS
                     DCAAIDLPDASVDILFCHQTFHHLVEQEQALAEFWRVLKPGGLLLFAESTKFYIDTWV
                     IRWLFRHPMHVQKSAEEYLGMLRQQGFQFEERNVSYPYLWWSRSKDFGLLERWGIMKA
                     KPFGQRDETLVNAVARKP"
     gene            complement(1042..2289)
                     /locus_tag="VLF16_14015"
     CDS             complement(1042..2289)
                     /locus_tag="VLF16_14015"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017520493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HSX72041.1"
                     /translation="MKSPEVEQRQIVVIGAGPSGAIAAAILKRQGHDVLVLERQRFPR
                     FSIGESLLSHCLDFVEEAGMLEAVQAAGFQTKHGAAFAWGERYTEFDFRDKFTAGKGS
                     TYQVIRADFDKLLADQAELQGVEIRYEEEIFAADFAGDCPRLSVRRLADGHEYSVECA
                     FVLDGSGYGRVLPRLLDLDTPSSFPIRQAVFTHIEDRIDPASGFDREKILITTHPKLR
                     DVWFWTIPFSNGRCSLGVVSAAEHYEGYPKDLDACLKQFVAETPSLSRVLENAVWDTP
                     ARAIGGYSANVKSLHGPGFALLGNAAEFLDPVFSSGVTIAMRSASMAAGLLHRQLGGE
                     QIDWENAFAIPLKRGVDTFRVYVQGWYDGSFQDVIFYENATPEIRRMICSILAGYAWD
                     EKNPYVAEPKRRLGVLAEICAAN"
     gene            complement(2276..3424)
                     /locus_tag="VLF16_14020"
     CDS             complement(2276..3424)
                     /locus_tag="VLF16_14020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013713763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HSX72042.1"
                     /translation="MTVLGFWLLALAIYALVAIIGGRRLIPIVGQLLVAAIAIPALLL
                     LWVEPHWQLSAQDLLAPTWLNLTYGLCFALLLGYILSDVIDLDLSPACVKIALPSFLV
                     PMLAGLACSLWLLPGERGWLSAVGIGLLFSITAIPVLYLFLQSIGYPAADTKRLLHAA
                     ILMDFLCWSLFGLAQGSSHPAALVWPLLAAALPLALRLLKLRHPLLYSLPFFALMLLF
                     QQLGLNALVFGIAYMLCLAWLRQPFVLPLPPHLWRLLINGLAVPLILTFGVLRVDFHG
                     IGQDTSWTVIAILLALPVLSKVLGSWLGLHWAAPSAAARVKWRESLLLNIRGLTEIVF
                     LNLLLQLQLIDSLIYFGLLLMSLFSTLLPALLGRHAHNNEARSRYEVS"
     gene            complement(3421..>5170)
                     /locus_tag="VLF16_14025"
     CDS             complement(3421..>5170)
                     /locus_tag="VLF16_14025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009396856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72043.1"
                     /translation="TWALLRLRTRGDAFDMQAPPQIAAAVAELRQHVSAEGGQLLAAG
                     GALHAAAGQAKATREIALIGGGATLGTLLLLLLAFRRPRILVSLLPMGVALLAGCTAC
                     VLVFGQINALTLVLGASLVGVAADYPQHYLSKSWGEGQWSSWAALRETLPGLSLSLGT
                     NLAGYVALAFTPFPALTQIALFSAAGLIGAYLCSVCLLPAWLNNLRLKPPSGLRRAAE
                     RLVQRRERLLARTGSWPWLALLLASCAGGLWQLTPQNDLRQWLGQEPRLMSEARRIAE
                     LTGQQPTSQFFLVRGADEQQLLQRQTELSARLDAAIAAGHLRGYRALSQLAAPESELA
                     PLRAALAKLPQHWQPLLDLGLPEAALRAELDELLKTPQPNLDQALAGPLGEAWRPLWL
                     GRHENEVAGIVSLQGLNDSALLQQTAEGLEGVQLIDRLGELNQLFAATQLSAAELKLM
                     SSAAIFLLLCLPFGLGGALRVICLPLLSALAALACLGWLGQPLTLFSLFGLLLITAIG
                     VDYAILMRENIGGPAVSLLGTLLSALTAWMSFGLLLISQTPAIANFGLAISLGLLFCF
                     LLSPWAATRPHKEVVA"
BASE COUNT          891 a         1661 c         1887 g          731 t
ORIGIN      
        1 gagggcgaac agcagggcgg cgaacagctc gcgggcctcg gcattgggtg gcagcaggcc
       61 gtcgttgcgc cactcgccgt gctccagcaa ctggcgcgcc agcggcacgc cgagcgggtc
      121 gaacagcgac cagcgcaggg cctcgccttc ggcctggatc accagcagcc agtcgcgttg
      181 ttcggcgttt tgcgtgcgct cgatctgcag gctgatcggt agcgtggcgc tcagtgcggg
      241 gctgctcgcc ggcacgggcg tgtgcccggc gcaggcgccg agcagcaggg tcatgacgag
      301 cagggcaacc ctcagcatca cggcttgcgc gccaccgcgt tgaccagggt ctcgtcgcgc
      361 tggccgaacg gcttggcctt catgatgccc cagcgttcga gcaggccgaa gtccttggag
      421 cggctccacc acaggtaggg gtaggagacg ttgcgttcct cgaactggaa gccctgctgg
      481 cgcagcatgc ccaggtactc ctcggcactc ttctgtacgt gcatcgggtg gcggaatagc
      541 cagcggatca cccaggtgtc gatgtagaac ttggtcgact cggcgaacag cagcaggccg
      601 cccggtttca gtacgcgcca gaactcggcc agggcctgtt cctgctcgac caggtggtgg
      661 aaggtctggt ggcagaacag gatgtcgacg ctggcatccg gcaggtcgat ggccgcgcag
      721 tcgctggcga tcagctgcac gtcgaggccc aggcgttcgg cctcggcgcg cgagcagtcg
      781 aggctgtgcg ggtcggcgtc caggccgatc atccgcgccg gggcgaaggc ctcgttgagc
      841 aggccgaacg agcggccctg gccgcaacct gcgtcgagca gcaccggtgc ctgcggcagc
      901 ggcgcatcga tcaggcgctt gaggtcgttg atcgccacgc gcagcacatg gtgctgccac
      961 acgtggctct gcaggaacca gaagccgaag cgggtttcct cgacgtaggt aggggcggcg
     1021 cgttccatcg acagggtttc ctcagttggc cgcgcagatc tcggccagca cgcccaggcg
     1081 gcgcttgggc tcggcgacat aggggttctt ctcgtcccag gcgtagccgg cgaggatcga
     1141 gcagatcatg cggcggatct ccggcgtggc gttctcgtag aagatcacgt cctggaacga
     1201 gccatcgtac caaccctgca catacacgcg gaacgtatcc acgccgcgct tgagcgggat
     1261 ggcgaacgcg ttctcccagt cgatctgctc gccgccgagc tggcgatgca acaggccggc
     1321 ggccatgctc gccgagcgca tggcgatggt cacgccagag ctgaacaccg ggtcgaggaa
     1381 ctcggcggcg ttgcccagca gggcgaagcc cgggccgtgc aggctcttga cgttggccga
     1441 gtagccgccg atggcgcgcg ccggggtgtc ccacacggcg ttctccagca cccggcttag
     1501 cgacggggtc tcggcgacga actgcttgag gcaggcgtcg aggtccttcg ggtagccctc
     1561 atagtgctcg gcggcagaca ccacgcccag cgaacagcgg ccgttgctga acggaatggt
     1621 ccagaaccac acgtccctga gtttcggatg ggtggtgatg aggatcttct cgcggtcgaa
     1681 gccggaggcc gggtcgatgc ggtcctcgat atgggtgaac accgcctggc ggatcgggaa
     1741 ggacgacggc gtgtcgaggt cgagcaggcg cggcagcacg cggccgtagc cgctgccgtc
     1801 gaggacgaag gcgcactcga cgctgtattc gtggccgtcg gccaggcgac gtaccgacag
     1861 gcgcgggcag tcaccggcga agtcggcggc gaaaatctct tcctcgtagc ggatctccac
     1921 gccctgcagt tcggcctggt cggccagcag cttgtcgaag tcggcacgga tcacctggta
     1981 ggtcgagccc ttgcccgcgg tgaacttgtc gcggaagtcg aactcggtgt agcgctcgcc
     2041 ccaggcgaag gccgcgccgt gcttggtctg gaagccggca gcctgcaccg cttcgagcat
     2101 gccggcctcc tcgacgaagt ccaggcagtg cgacagcagg ctctcgccga tggagaagcg
     2161 cgggaagcgc tggcgctcca gcaccaatac gtcgtggccc tggcgcttga ggatggccgc
     2221 ggcgatggcg cccgaggggc cggcaccgat gacgacgatc tgacgttgtt cgacttcagg
     2281 agacttcata gcggcttcgt gcctcgttgt tgtgtgcgtg cctgccgagc agcgccggca
     2341 gcagggtgga aaacaggctc atcagcagca ggccgaagta gatcagcgaa tcgatcagct
     2401 gcagctgcag gagcagattg aggaagacga tctcggtgag gccgcggatg ttaagcagca
     2461 ggctctcgcg ccacttcacc cgcgccgcgg cgctcggggc ggcccagtgc agaccgagcc
     2521 agctgccgag cactttgctc agtaccggca gcgccaggag gatagcgatg accgtccagg
     2581 aggtgtcttg acctatgcca tggaaatcca cgcgcagcac gccgaacgtc aggatcagcg
     2641 gcaccgccag gccatttatc agcaatcgcc acaggtgtgg cggcagtggc agcacgaagg
     2701 gttgcctgag ccaggccagg cacagcatgt aagcgatgcc gaacaccagg gcgttgagcc
     2761 ccagctgctg gaacagcagc atcagggcga agaacggcag gctgtacaac agcgggtggc
     2821 gcagcttgag caggcgcagc gccagtggca gggccgcggc cagcagcggc cagaccagcg
     2881 cggccgggtg gctgctgccc tgggccaggc cgaacaggct ccagcacagg aagtccatga
     2941 ggatcgccgc gtgcagcagg cgcttggtgt ccgccgccgg gtagccgatg ctctgcagga
     3001 acaggtagag caccggaatg gcggtgatcg agaacagcag gccgatgccc accgcgctga
     3061 gccaaccacg ctcgccgggc agcagccaga gcgagcaggc cagaccggcc agcatcggta
     3121 ccagaaagct gggcagggcg atcttcacgc aggccgggct gaggtccagg tcgatcacgt
     3181 cgctgaggat gtagcccagc agcagggcga agcacaggcc gtaggtcagg ttcagccagg
     3241 tcggcgccag caggtcctgg gcgctcagct gccagtgcgg ctcgacccac aacagcagca
     3301 gggcgggaat ggcgatggcc gccaccagca actggccgac gatgggaatc agccggcgcc
     3361 cgccgatgat cgccaccagg gcgtatatcg ccagggccaa tagccagaat ccgagcacgg
     3421 tcacgcgaca acctccttgt gcggccgcgt ggcggcccag ggcgagagca ggaaacagaa
     3481 cagcaggccg aggctgatgg ccaggccgaa gttggcgatg gccggggtct ggctgatcag
     3541 cagcagaccg aacgacatcc acgcggtgag cgccgagagc agggtgccga gcaggctcac
     3601 cgccgggccg ccgatgttct cgcgcatgag gatcgcgtag tcgacgccga tggcggtgat
     3661 cagcagcagg ccgaacaggc tgaacagggt cagcggctgg cccagccagc cgaggcaggc
     3721 cagcgccgcc agggccgaga gcagcggcag gcagatcacc cgcagcgcgc cgccgaggcc
     3781 gaagggcagg cacagcagca ggaagatggc ggcgctggac atcagcttga gttcggcggc
     3841 gctgagctgg gtggcggcga acagctggtt cagctcgccc aggcggtcga tcagctgcac
     3901 accctccagt ccctcggccg tttgttgcag cagcgcgctg tcattcaggc cctgcaggct
     3961 gacgatgccg gcgacttcgt tctcatggcg acccagccac agcgggcgcc aggcctcacc
     4021 cagcgggccg gccagggcct ggtccagatt cggctgcggt gttttcagaa gttcgtccag
     4081 ctcggcacgc agggccgctt ccggcaggcc gaggtcgagc agcggctgcc agtgttgcgg
     4141 cagcttggcc agcgcggcgc gcagcggcgc cagttcgctc tcgggcgctg ccagctggct
     4201 gagggcgcga tagccgcgca gatggccggc ggcgatggcg gcgtccagac gcgcactgag
     4261 ttcggtctgg cgctgcagca gctgttgctc gtcggcgcca cggaccagga agaactggct
     4321 ggtgggctgc tggccggtca gctcggcgat gcgccgggcc tcgctcatca gcctcggctc
     4381 ctggcccagc cactggcgca ggtcgttctg cggcgtcagc tgccacaggc cgccggcgca
     4441 ggacgccaga aggagcgcta gccacggcca gctgccggtg cgcgccagca ggcgttcgcg
     4501 gcgctgtacc aggcgctcgg cggcgcggcg caggccacta ggtggtttca agcgcagatt
     4561 gttcagccag gccggcagca gacacaccga gcacaggtag gcgccgatca ggccggcggc
     4621 ggagaacagg gcgatctggg tcagcgccgg gaacggcgtg aaggccagcg ccacgtagcc
     4681 ggcgaggttg gtgcccaggc tcaggctcag gcccggcagg gtctcgcgca gggcggccca
     4741 gctcgaccac tggccttcgc cccagctctt gctcaggtag tgctgcgggt agtcggcggc
     4801 gacgccgacc aggctggcgc cgagcaccag ggtcagcgcg ttgatctggc cgaacaccag
     4861 cacgcaggcg gtgcagccgg ccagcagcgc gacgcccatc ggcagcaggc tgaccaggat
     4921 gcgtgggcgg cggaaggcga gcagtagcag cagcagggta ccgagggtgg cgccgccacc
     4981 gatcagggcg atctcgcggg tggctttggc ctggccggcc gccgcgtgca gggcgccgcc
     5041 ggccgccagc aactggccgc cttctgcgct gacgtgctgg cgcagttcgg cgacggcggc
     5101 ggcgatctgt ggcggcgcct gcatgtcgaa ggcatcgccg cgggtgcgca ggcgcagcag
     5161 cgcccaagtg
//
LOCUS       DATIHC010000839         5168 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_14013, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000839 DATIHC010000000
VERSION     DATIHC010000839.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5168
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14013"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..909
                     /gene="dapE"
                     /locus_tag="VLF16_14030"
     CDS             <1..909
                     /gene="dapE"
                     /locus_tag="VLF16_14030"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009014 - succinyl-diaminopimelate
                     desuccinylase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HSX72044.1"
                     /translation="LEAWQYQPFDVRVDDEGMLCGRGAADMKGSLASMIVAVERFVAD
                     HPNHQGAIAFLITSDEEGPAHHGTKAVVERLRERGDRLDWCIVGEPSSTTLLGDVVKN
                     GRRGSLGATLTVYGKQGHVAYPHLAKNPIHLAAGALAELAAEHWDDGNAYFPPTSFQV
                     SNLNSGTGATNVIPGELKAVFNFRFSTESTVEGLQQRVNAILDKHGLDYHIDWALSGL
                     PFLTQPGELLDAVAASIKSVTGRETTPSTSGGTSDGRFIATLGTQVVELGPVNATIHQ
                     INERVLASDLDLLTEVYYQTLVKLLA"
     gene            906..1721
                     /locus_tag="VLF16_14035"
     CDS             906..1721
                     /locus_tag="VLF16_14035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017246240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HSX72045.1"
                     /translation="MSLICPICQAPLSPVDNGLACPANHRFDRARQGYYNLLPVQHKN
                     SRDPGDNQAMVEARRRFLDGGHYAPLAKRLAELASERGPRTWLDIGCGEGYYTAQLAA
                     LLPEADGHALDISREAVKRACKRAPQLTWLVASMARVPLGDGSCDLLASVFSPLDWQE
                     ALRLLRPGGGLLRMGPTRVHLMELRQKLYDEVRDYDDQKHLELIPAGMRLAHSETISF
                     PLLLADAQARADLLAMTPHGWRASAERRAAVIAEDFEVTVSIRYDWIEKGSAR"
     gene            1935..2306
                     /locus_tag="VLF16_14040"
     CDS             1935..2306
                     /locus_tag="VLF16_14040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72046.1"
                     /translation="MRQPDIEIYLKDADQQAVTVWLGEAIGPVSEWRQQGQTFKCHAG
                     DVPVTWLPKAVGKWHSLYLESDATPWADDLACARAAYAALGVQVRCAPGGWSEEEAEE
                     EADRWIKIDAEGEQEIVWRTD"
     gene            2346..2729
                     /locus_tag="VLF16_14045"
     CDS             2346..2729
                     /locus_tag="VLF16_14045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72047.1"
                     /translation="MKRREVLGALVTLAATPLLASCSPDDRQASSMFSVDVWVDSSPD
                     NLANSQGDPGLFSPPAPLTTKLPSGLRLEISCERIASGHFHVGGFPRWAVGDIPKVFG
                     PLHDQSFPDDHASYVLAVKAGDETA"
     gene            complement(2783..2992)
                     /locus_tag="VLF16_14050"
     CDS             complement(2783..2992)
                     /locus_tag="VLF16_14050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HSX72048.1"
                     /translation="MADREVGTVKWFNDSKGYGFIQRESGPDVFVHYRAIRGEGHRTL
                     VEGQQVEFSVIQGQKGLQAEDVSKV"
     gene            complement(3222..4196)
                     /locus_tag="VLF16_14055"
     CDS             complement(3222..4196)
                     /locus_tag="VLF16_14055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004421057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4340 domain-containing protein"
                     /protein_id="HSX72049.1"
                     /translation="MNRRSLFVLAVLAMALVAGWYFTSQVGRPQAPVQAEAWLPGLQP
                     EQVNAIAVQRAGQPQVRLERREQRWVVPAKADYPADQAAVSTLLKALAEARKVEPRTA
                     NPELHGRLGLADKGAAEEQGVRVTLERGEPPLSLLIGNAGQQSGQLVRRADEAQSWLV
                     SQRIELPASELAWLDRRVVAVPFAEVRTLDLRHTGGERLTLFRDNAGDAHLQVRDLPK
                     GKRLAFEGAADGMARFFEDLRFADAAPLAQLTFTGEPTLQFALDTFAGKRLKGRAYAK
                     GDQHWLLLEQGSDLPPAELPGRSDWAYRLEPHQYQSLARKLTDVLADK"
     gene            complement(4341..>5168)
                     /locus_tag="VLF16_14060"
     CDS             complement(4341..>5168)
                     /locus_tag="VLF16_14060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017674806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter"
                     /protein_id="HSX72050.1"
                     /translation="DVATAGLESLNIATAGILEPVEGAKTQFVPLLQSSEYAMPFDVA
                     RFQMLANPEELIRDLEPTGERYAIAARISGPAQSAFPEGIEGQKDGLKSAENINVIAV
                     ADTDLLSDRMWVQVQDFFGQRVPQPFADNAGFAINALDNLSGSDALISVRSRGRFSRP
                     FEVVEALQREAEAQFRVKEEDLQKRLAETDQKLASLQQQDPSKPLELTPEQQATVQQF
                     IAEKLRIRKELREVRFQLNAQIEDLGRTLKLANILAVPLLLTLGVLALWLWRRRKAA"
BASE COUNT          858 a         1812 c         1657 g          841 t
ORIGIN      
        1 ctggaggcct ggcagtacca gccgttcgac gtgcgcgtgg acgacgaagg catgctctgc
       61 ggccgcggcg cggcggacat gaagggcagc ctggcgtcga tgatcgtggc cgtggagcgc
      121 ttcgtcgccg accacccgaa ccaccagggc gccatcgcct tcctcatcac cagcgacgag
      181 gaaggcccgg cccaccacgg caccaaggcc gtggtcgagc gcctgcgcga gcgcggcgac
      241 cgcctggact ggtgcatcgt cggcgaaccc tccagcacca ccctgctcgg cgacgtggtg
      301 aagaacggcc gccgcggctc cctcggcgcc accctcaccg tgtacggcaa gcagggccac
      361 gtggcctacc cgcacctggc caagaacccc atccacctgg ccgccggcgc cctggccgaa
      421 ctggccgccg agcactggga cgacggcaac gcctacttcc cgccgaccag cttccaggtg
      481 tccaacctca actccggcac cggcgccacc aacgtcattc cgggcgagct gaaggcggtg
      541 ttcaacttcc gcttctccac cgaatcgacc gtggaaggcc tgcagcagcg ggtcaacgcc
      601 atcctcgaca agcacggcct ggactaccac atcgactggg ccctgtccgg cctgccgttc
      661 ctcacccagc cgggcgagct gctcgacgcc gtggccgcca gcatcaagtc cgtcaccggt
      721 cgcgagacca cgccgtccac ctccggcggc acctcggacg ggcgcttcat cgccaccctg
      781 ggcacccaag tggtcgagct gggcccggtc aacgcgacca tccaccagat caacgagcgc
      841 gtgctggcca gcgacctgga cctgctcacc gaggtctact accagaccct ggtgaaactg
      901 ttggcatgag cttgatctgc ccgatctgcc aggcgccgct gagcccggtc gacaacggcc
      961 tggcctgccc ggccaaccac cgcttcgacc gtgcgcgcca gggctactac aacctgctgc
     1021 cggtgcagca caagaacagc cgcgatcccg gtgacaacca ggccatggtc gaggcgcggc
     1081 ggcgctttct cgacggcggc cactacgcgc cgctggccaa gcgcctggcc gaactggcct
     1141 ccgagcgcgg cccgcgtacc tggctggata tcggttgtgg cgagggctac tacaccgcgc
     1201 agctcgccgc gctgctgccc gaggccgacg gccatgccct ggacatctcc cgcgaggcgg
     1261 tgaaacgcgc ctgcaagcgc gccccccagc tgacctggct ggtggcgagc atggcccgcg
     1321 taccgctggg cgatggcagc tgcgacctgc tggccagcgt gttcagcccg ctggactggc
     1381 aggaggctct gcgcctgctc aggcccggcg gcggcctgct gcgcatgggc ccgacccgcg
     1441 tgcacctgat ggaactgcgc cagaagctgt acgacgaggt gcgcgactac gacgaccaga
     1501 aacacctgga gctgatcccc gctggcatgc gcctggccca tagcgaaacc atcagcttcc
     1561 cgctgctgct ggccgatgcc caggcccgcg ccgacctgct ggccatgacc ccgcacggct
     1621 ggcgcgccag cgccgaacgc cgcgccgcgg tgattgccga agacttcgaa gtgaccgtgt
     1681 ccattcgcta cgattggatc gagaaaggtt cggcccgata aatgtctgcg cttggccatg
     1741 cgtcgttaaa aaccggttcg gaaagccgct tgcggctaac gcgcttcagc gcgacccgaa
     1801 gggcgagcga agcgagtact gctcatttac aacgcgtaaa ctccgcgtcc tcaccgactt
     1861 ttgccggggc gccgagtcta gcctgacctt cgctcgacga tttctcgtac cgaaccgaac
     1921 ctagagagcc cgccatgcgc caacccgata tcgagatcta tctgaaggac gccgaccagc
     1981 aggccgtgac cgtctggctg ggcgaggcca tcggcccggt cagtgaatgg cgccagcagg
     2041 gccagacctt caagtgccac gccggcgatg taccggtgac ctggctgccg aaggccgtgg
     2101 gcaaatggca cagcctctac ctggaaagcg acgccacgcc ctgggccgac gacctggcct
     2161 gcgcccgcgc cgcctacgcc gcgctcggcg tgcaggtgcg ctgcgccccc ggtggctgga
     2221 gcgaggagga ggccgaggaa gaggcggatc gctggatcaa gatcgacgcc gagggcgagc
     2281 aggaaatcgt ctggcgtacg gattgagcat cgccctcata cgctctcgat ccagcggagc
     2341 cgcgcatgaa gcgacgcgag gttctcggcg cactggtcac actggcagcc accccgctgc
     2401 tggcctcgtg ctcacccgat gacaggcagg cgtcttccat gttctcggtc gacgtctggg
     2461 tcgattccag cccggataac cttgccaaca gccagggaga tcccggcctg ttctccccgc
     2521 ccgcaccgct gacgacgaag ctgccctccg ggctgcggct ggagatcagc tgcgaaagga
     2581 tcgccagcgg acatttccat gtggggggtt tcccacgatg ggcagttggt gacatcccga
     2641 aagtattcgg gccccttcac gatcagagct ttccagacga tcacgcgtcc tatgtcctgg
     2701 ccgtcaaggc cggcgacgaa accgcctagc cgaaaaacaa aaggcccgtc gatgacgggc
     2761 cttttgtcgt gtagcgcggg tcttagacct tcgatacgtc ttccgcttgc aggcccttct
     2821 ggccctggat cacggagaac tccacctgct ggccttcaac cagagtgcgg tgaccctcgc
     2881 cacgaatggc gcggtagtgg acgaacacgt ccgggccgct ttcgcgttga atgaagccat
     2941 accccttgga atcattgaac cacttgacgg ttccgacctc acgatcagcc attaccactt
     3001 ccctcgattc tcgattttgt tgtggccctt gcgggcttcg acggttcggc gcaaacgttc
     3061 tttttcttct ttccgacccc ggctaaaacg agcgtggagc ggtattccga aaggcgtcct
     3121 aatgcgaccg caacgggagt ataaaacaag cgttcgtctt gccaagggat tttttcggcc
     3181 ggctgcaagc cccatggcgc atgggctgca gcccttttca ctcacttatc ggctagcaca
     3241 tcggtcaact ttctggccag gctctggtac tgatggggct cgaggcgata ggcccagtcg
     3301 ctgcgcccgg gcaactcggc aggaggcagg tcgctgccct gctccagcag caaccagtgc
     3361 tgatcgccct tggcatacgc ccgccccttc aggcgcttgc cggcgaaggt gtcgagggcg
     3421 aattgcagcg tcggctcgcc ggtgaaggtc agttgcgcga gcggcgcggc atcggcaaag
     3481 cgcaggtctt cgaagaagcg cgccatgcca tcggcggcgc cctcgaaggc cagtcgcttg
     3541 cctttgggca gatcgcgcac ctgcagatgg gcatccccgg cattgtcgcg gaacagcgtc
     3601 agccgctcgc cgccggtgtg gcgtaggtcc agcgtgcgca cctcggcgaa gggcacggca
     3661 acgacgcgac ggtccagcca cgccagttcg ctggccggca gctcgatgcg ctggctgacc
     3721 agccagctct gcgcctcgtc ggcccgtcgc accagctgcc ccgactgctg gccggcgttg
     3781 ccgatcagca ggctcagcgg cggctcgccc cgctccagcg tgacgcgcac accctgctcc
     3841 tccgcggcgc ccttgtcggc caggccgaga cgaccgtgca gctcgggatt ggcggtccgc
     3901 ggctcgacct tgcgggcctc ggccagggcc ttgagcagcg tgctcaccgc ggcctgatcg
     3961 gccgggtaat cggccttggc cggcaccacc cagcgctgct cgcggcgctc caggcgcacc
     4021 tgcggctggc cggcgcgctg taccgcgatg gcgttcacct gttccggctg caggcccggc
     4081 aaccaggcct cggcctgaac cggcgcctgc ggcctgccga cctgactggt gaagtaccag
     4141 ccggccacca gggccatcgc cagcaccgcc agaacgaaga gggacctgcg attcatagcc
     4201 ttgtctcctt aggcaggagt agaactcggg aagggaatcc tctctcccgt taacgggggc
     4261 acgcccagtg gagagggtta ggggtaggaa tcggcatcca ccctcgcccc tctcccacaa
     4321 gtgggagagg ggtcaaagca tcacgcggcc ttgcgccggc gccacagcca cagtgccagc
     4381 acgccgaggg tcagcagcag cggcacggcg aggatgttgg ccagcttgag ggtgcgcccc
     4441 aggtcctcga tctgcgcgtt gagctggaag cgcacctcgc gcagttcctt gcgaatgcgc
     4501 agcttctcgg cgatgaactg ctgcaccgtg gcctgctgct cgggggtcag ctccagaggc
     4561 ttgctcgggt cctgctgctg cagcgacgcg agcttctggt cggtctcggc caggcgcttc
     4621 tgcaggtctt cttccttgac ccggaactgc gcctcggcct cgcgctgcag ggcctcgacc
     4681 acctcgaacg ggcggctgaa gcgaccgcgc gaacgcacgc tgatcagcgc atcgctgccg
     4741 gacaggttgt ccagcgcatt gatggcgaac ccggcgttgt cggcgaacgg ctgcggcacg
     4801 cgctggccga agaagtcctg cacctgcacc cacattcggt cgctgagcag gtcggtgtcg
     4861 gccacggcga tcacgttgat gttctcggcg gacttcaggc cgtccttctg cccctcgatg
     4921 ccctcgggga aggcggactg cgccgggccg ctgatgcgcg cggcgatggc atagcgctcg
     4981 ccggtcggct ccaggtcgcg gatcagctcc tccggattgg ccagcatctg gaagcgcgcc
     5041 acgtcgaagg gcatggcgta ctcggagctc tgcagcagcg gcacgaactg ggtcttggcc
     5101 ccttcgaccg gctcgaggat accggcggtg gcgatgttca ggctctccag gccggcggtg
     5161 gccacgtc
//
LOCUS       DATIHC010000840         5375 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_15315, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000840 DATIHC010000000
VERSION     DATIHC010000840.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5375)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5375)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5375
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15315"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1328
                     /gene="mutS"
                     /locus_tag="VLF16_14065"
     CDS             <1..1328
                     /gene="mutS"
                     /locus_tag="VLF16_14065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HSX72051.1"
                     /translation="PVLARDGGVFADDYDAELAELRRLSTSADQFLVDLEAREREATG
                     IANLKVGYNRVHGYFIELPSKQAESAPADYIRRQTLKGAERFITPELKTFEDKALSAK
                     SRALAREKQLYEELLELLIGQLAPLQDTAGALAELDVLSNLAERALNLDLNRPRFVDE
                     PCMRIDQGRHPVVEQVLDTPFVANDLGLDDATRMLIITGPNMGGKSTYMRQTALIVLL
                     AHIGSYVPAAACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVL
                     MDEVGRGTSTFDGLSLAWSAAEHLAKLRAWTLFATHYFELTVLPESEPVVANVHLNAT
                     EHNERIVFLHHVLPGPASQSYGLAVAQLAGVPGQVIQRAREHLARLETTSLPHDMPRS
                     EPGQPAAPLQSDMFAVLPHPVLEELGKINPDDLSPRRALELLYTWKTRI"
     gene            1468..1791
                     /gene="fdxA"
                     /locus_tag="VLF16_14070"
     CDS             1468..1791
                     /gene="fdxA"
                     /locus_tag="VLF16_14070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin FdxA"
                     /protein_id="HSX72052.1"
                     /translation="MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCA
                     LCEPECPAQAIFSEDEVPDGMQEFIELNAELADVWPNITEKKDALADAEEWDGVKDKL
                     QHLER"
     gene            complement(2228..3232)
                     /gene="rpoS"
                     /locus_tag="VLF16_14075"
     CDS             complement(2228..3232)
                     /gene="rpoS"
                     /locus_tag="VLF16_14075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoS"
                     /protein_id="HSX72053.1"
                     /translation="MALNKEAPEFDVDDEVLLMEPGIILEELAEDAELPVSSAKPKNS
                     AAHLKQHKYIDYTRALDATQLYLNEIGFSPLLTPQEEVHFARLAQKGDPAGRKRMIES
                     NLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
                     RAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSAEEIANLLEKPVDEVKRML
                     GLNERVTSVDVSLGPDSDKTLLDTLTDDRPTDPCELLQDDDLSESIDQWLSELTDKQR
                     EVVVRRFGLRGHESCTLEEVGQEIGLTRERVRQIQVEALKRLREILEKNGLSSDALFQ
                     "
     gene            complement(3427..4317)
                     /locus_tag="VLF16_14080"
     CDS             complement(3427..4317)
                     /locus_tag="VLF16_14080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016974429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HSX72054.1"
                     /translation="MSLTNGQQRKRLAGIGLGAAVFAAILSGCGSSPSTPVQVVDRTH
                     GGSAASRPQTTSGQYRVQRGDTLYSIAFRFGWDWKALAARNNVPAPYTIRPGQTIRFD
                     QPQRASAPVVVRPSTPPVSSQPVVSVLQPTTRPPVQSQPSKPAVAQPIPQPPVATAGS
                     KASAGKVQPVQRSAKGWAWPANGLLIGKFSSNGSLNKGVDIAGELGQPVLAAADGSVV
                     YAGSGLRGYGELVIIKHSDAYVSAYGHNRKLLVREGQQVKVGQHIAEMGSTGTDRVKL
                     HFEIRRQGKPVDPLQYLPRR"
     gene            complement(4423..5058)
                     /locus_tag="VLF16_14085"
     CDS             complement(4423..5058)
                     /locus_tag="VLF16_14085"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004719 - protein-L-isoaspartate
                     (D-aspartate) O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HSX72055.1"
                     /translation="MTSQRTRERLIERLYEEGLSNPHVLEVIRRTPRHLFVDEALAHR
                     AYEDTALPIGHNQTISQPYIVGRMTELLLAGGPLDKVLEIGTGSGYQTAVLAQLVERV
                     FSVERIQSLQDRAKERLVELKLRNVVFRWGDGWEGWNALGPYNGIIVTAAAVEVPQAL
                     LDQLAVGGRLVIPVGAGETQELLLIVREEDGYSRHVLDLVRFVPLLNGPLA"
     gene            complement(5097..>5375)
                     /locus_tag="VLF16_14090"
     CDS             complement(5097..>5375)
                     /locus_tag="VLF16_14090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010952690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HSX72056.1"
                     /translation="NVNVPNLPLDHIRGIQLTRLGHRARAAAPVKMVNPRGKEGYWIS
                     VSGDAEDGGPGTDFHAVLQGYVSITPLRLDRTLHEAFDSVGGWLEGLL"
BASE COUNT          982 a         1778 c         1651 g          964 t
ORIGIN      
        1 cgccggtgct ggcgcgggac ggcggcgtgt tcgccgacga ctacgacgcc gagctcgccg
       61 aactgcgccg gttgtcgacc agcgccgacc agttcctggt cgacctggaa gcgcgcgagc
      121 gcgaggcgac cggcatcgcc aacctcaagg tcggctacaa ccgcgtgcac ggctacttca
      181 tcgagctacc cagcaagcag gccgagtcgg cgccggccga ctacatccgc cgccagactc
      241 tcaagggcgc ggagcgtttc atcacgccgg agctgaagac cttcgaggac aaggcgttat
      301 cggccaagag ccgcgccctg gcccgcgaga agcagctcta cgaggagctg ctggagctgc
      361 tcatcggcca gctggcaccg ctacaggaca ccgccggcgc gctggccgag ctggatgtgt
      421 tgagtaatct ggccgagcgc gcgctgaatc tcgatctgaa tcgcccgcgc ttcgtcgatg
      481 agccctgcat gcgcatcgac cagggtcgcc acccggtggt cgagcaggtg ctcgatacgc
      541 ctttcgtggc caacgacctg gggctggacg atgccactcg catgctgatc atcaccggcc
      601 cgaacatggg cggtaagtcc acctacatgc gccagaccgc gctgatcgtg ctgctggccc
      661 acatcggcag ctacgtaccg gcagccgcgt gcgagctatc gctggtggac cgcatcttca
      721 cccgcatcgg ctcttccgac gatctggccg gcggccgctc caccttcatg gtggagatga
      781 gcgagaccgc caacatcctg cacaacgcca cagaccgcag cctggtgctg atggacgagg
      841 tgggccgcgg caccagcacc ttcgacggcc tgtcgctggc ctggtcggcc gccgagcacc
      901 tggccaagct gcgcgcctgg acgctgttcg ccacccacta cttcgagctg accgtgctgc
      961 cggagagcga gccggtggtg gccaacgtgc acctcaacgc caccgagcac aacgaacgca
     1021 tcgtcttcct gcaccatgta ctccccggcc ccgcgagcca gagctacggc ctggcggtgg
     1081 cacagctggc cggtgtgccg ggccaggtga tccagcgcgc ccgcgagcac ctggcccgcc
     1141 tggagaccac cagcctgccc catgacatgc cgcgcagcga acccgggcag ccagcggcgc
     1201 cgctgcagag cgacatgttc gccgtgctgc cgcatcccgt gctggaggaa ttgggcaaga
     1261 tcaatccgga tgatctgagc ccgcgccgtg cgctggagct gttatacaca tggaagacac
     1321 gcatctgaca gactgccgca cgagctgtta gaatcgcgcg catttttcag atcgccccgg
     1381 tttacagcct gagccgcggc ctttatcgag cgcctgcaga acctgcgcag acgggaccag
     1441 gcgtcgccgc ccgaggagag aatcagcatg accttcgtcg ttaccgacaa ctgcatcaag
     1501 tgcaaataca ccgattgcgt ggaagtctgc ccggtggact gcttctatga aggtccgaac
     1561 ttcctggtga tccacccgga cgagtgcatc gactgcgccc tgtgcgagcc ggagtgccct
     1621 gctcaggcga tcttctccga ggacgaggtg ccggacggca tgcaggagtt catcgagctg
     1681 aatgccgaac tggcggacgt ctggccgaac atcaccgaga agaaggatgc tctggcggac
     1741 gccgaggaat gggacggcgt gaaggacaaa ctgcagcacc tggagcgcta agcgcccctg
     1801 acgcaaaagg tccgcacatg cgggcctttt tgtttccagc tttcctgcgg gcaaaaaaag
     1861 gggcggtgat tagccgcccg ctctttcttc cctactccct gagaatcctt tcatcatcct
     1921 gatgaaccgc tccctgcggt gcttccctgg tcgccgtcct ggctcccgtg ccatctccct
     1981 aggcacggct ccatattaac ggctccgcag actcgaacaa gtcggtgaaa tccctgtacg
     2041 caactgccgt tacgctcctt ggactgcggc aaacccagta gattcaaaca attacagcga
     2101 agccatggat aagaatggat cgcaactggc gcgtcgttcc gaggaagact tacagcgccc
     2161 gtaagcgatg acttacaagc gcccacaaaa aacccggcga ttgccgggct tcttgtgaca
     2221 tgtggcgtta ctggaagagg gcatcgctcg acaggccgtt cttctccaag atctcgcgca
     2281 gacgcttgag cgcctccacc tggatctggc gcacacgctc tcgggtcaaa ccgatctcct
     2341 gtccgacctc ttccagcgtg cagctttcat ggccacgcag gccgaagcgg cgcaccacca
     2401 cttcgcgctg cttgtcggtc agctccgaca gccattgatc gatgctctcc gacagatcgt
     2461 cgtcctgcag cagttcgcag gggtctgtcg gccggtcatc ggtcagggta tcgagcaggg
     2521 tcttgtccga atccggcccg agcgagacgt cgaccgaggt gacgcgctcg ttgaggccga
     2581 gcatgcgctt gacctcatcg accggcttct ccaacaggtt ggcgatttcc tcggccgagg
     2641 gttcgtggtc cagcttctgg gtcagctcgc gcgccgcgcg caggtagacg ttgagctcct
     2701 tcaccacatg aatcggcagg cgaatcgtgc gggtctggtt catgatcgcg cgttcgatcg
     2761 tctggcggat ccaccaggtg gcgtaggtgg aaaagcggaa gccacgctcg ggatcgaact
     2821 tctccaccgc gcgaatcagg ccgaggttgc cctcttcgat cagatccagc agggagaggc
     2881 cacgattgac gtaacgccgt gcgatcttca ccaccaggcg caggttgctc tcgatcatgc
     2941 gcttgcgccc ggccggatcg cccttctgcg cgaggcgcgc aaagtgcact tcttcctgcg
     3001 gggtcagcaa tggagagaag ccgatctcgt tgagatacag ctgagtcgcg tccaatgctc
     3061 gggtgtagtc gatgtacttg tgctgcttga gatgggctgc ggagttcttg ggtttggcgc
     3121 tggagaccgg cagctcggca tcttccgcca gttcttccaa gatgatgcca ggctccatga
     3181 ggagcacctc gtcatcgacg tcaaactccg gcgcttcttt gttgagtgcc atttcttgtt
     3241 gtcccatgct gagttcgaca accagctctg gcggcaccca tcccggcatc acatcagata
     3301 cagaccccag ccccccaagc tattcagcct gctgccgagc attgcgtacc tgaagctaaa
     3361 gctggatgac tccctggcaa acaccaaagc ccgctcagcc tacgcaggag acggatggtg
     3421 gcaggatcaa cgacgcggca gatattgcag tggatctaca ggtttgccct ggcggcgaat
     3481 ctcaaaatgg agcttcaccc gatcggtacc cgtggatccc atctcggcga tatgctgtcc
     3541 gactttgacc tgctgtccct cccgcaccag caacttgcgg ttatgtccgt aagcgctcac
     3601 gtaggcatcg ctgtgcttga tgatcaccag ttcgccgtag ccccgtagac cactcccggc
     3661 gtacacaacg gaaccatcag ccgcagctaa aacaggctgg cccaattctc cggcgatatc
     3721 aacgccttta ttcaaactgc cgtttgatga gaatttgccg atcaacaggc cgttggccgg
     3781 ccacgcccac cccttcgcag aacgctgtac cggctgcacc ttgccggccg atgccttgct
     3841 gccggcagtg gccacgggcg gttgcggaat gggctgagcc accgccggct tgctcggctg
     3901 cgattgcacc ggcggacgcg tcgtcggctg cagcaccgag acgactggct ggctgctgac
     3961 cggcggcgtg ctcggacgca ccacgaccgg cgcgctggca cgctgcggct gatcgaagcg
     4021 gatcgtctgc ccgggacgga tggtgtacgg agcaggaacg ttgttgcgcg cagccagggc
     4081 cttccagtcc cagccgaaac gaaaggcgat ggagtaaagc gtatcgccgc gctgtacccg
     4141 gtactggccg ctggtggtct gtggacggga ggcggcgctg ccaccatggg tccggtccac
     4201 gacctgcacc ggcgtcgagg gcgagctgcc acaacccgac agaatggccg cgaagactgc
     4261 cgcccctagg ccgatgcccg ccaggcgctt gcgctgctgt ccgttcgtga gactcaaccc
     4321 ctgctccctt tgccggtgtg tttcttaata gttgtcgcgc attgtgccgg aattatccgc
     4381 catcgccagc accgcgcgct ggcattgccg caaggtcccg cctcaggcca gcgggccgtt
     4441 gagcaacggg acgaagcgca ccagatcgag tacgtgacgg gaatagccgt cctcctcgcg
     4501 cacgatcagc agcagctcct gggtctcccc agcgccgacc ggaatcacca gacggccacc
     4561 cacggcgagc tgatccagca aggcctgcgg cacttccacg gccgccgcgg tgacgatgat
     4621 gccgttgtac ggccccaagg cattccagcc ctcccagccg tcgccccagc ggaacaccac
     4681 gttgcgcagc ttcagttcga ccaggcgttc cttggcgcga tcctgcaggg actggatgcg
     4741 ctccaccgag aacacccgct ccaccagctg cgccagcacg gcggtctggt agccggagcc
     4801 ggtgccgatc tccagcacct tgtccaacgg accgccggcc agcagcagtt cggtcatgcg
     4861 cccgacgata taaggctggg aaatcgtctg gttgtggccg atgggcagcg cggtgtcttc
     4921 gtaggcgcga tgggccagcg cctcgtcgac gaagaggtgg cgcggcgtac ggcggatgac
     4981 ttcgagcacg tgcgggttgg acaggccttc ctcgtacagc cgctcgatca ggcgctcgcg
     5041 ggtccgctgc gaggtcatgc cgatgccgtg gcgctgcaga tgatcctggc cacgcatcac
     5101 agcaggccct ccagccagcc gccgacgctg tcgaacgcct cgtgcagagt acggtcgagg
     5161 cgcagcggcg taatcgacac gtaaccctgc agcaccgcat ggaaatcggt ccctggccca
     5221 ccgtcctcgg catcgccgga gacagagatc cagtagcctt ccttgccccg cgggttgacc
     5281 attttcaccg gcgcggcggc gcgggcgcga tggcccaggc gggtcagctg gatgccgcga
     5341 atgtgatcca gtggcaggtt cggtacgttg acgtt
//
LOCUS       DATIHC010000841         1835 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17632, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000841 DATIHC010000000
VERSION     DATIHC010000841.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1835
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17632"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1835
                     /locus_tag="VLF16_14095"
     CDS             <1..>1835
                     /locus_tag="VLF16_14095"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HSX72057.1"
                     /translation="DEDGSLHGSVQNVSVQKRDEPALRESEQRFRQLFEQTPHIAVQG
                     YDSERRVIFWNQASARLYGYSLAEALGRRLEDLIVPPAMRPQLISDVSAWMIGGPAIP
                     AAELTLRHRDGREVHVFSSHLMLRNARNQLEMYCLDIDLGQQKAAHQELEASEARYRE
                     LVEQLHEAIFLADGGGRLTLVNPAWQTITGYSIQQSIGHALLDFIEEDQREEVGLHIS
                     AILARQESSWLGELRLRDIDGRTHWVSLRLAAGAQHGLGLRGSLSDIQERRHSQALQE
                     ARNAVLDRLLAQRPLEESMNDMAQRLERISPGMLVSIMRLENGELHLLAAPSLPTGFT
                     RAVNGIPARRDLGSCGHAAASGELTIVEDIRQHPNWADFEEAASAAGLRACWSLPFKN
                     EQNEVLGVFGIYYRRPARPTPDDIQLVTDFTRLAGLAVRQQQHDAERLQSELRFRATF
                     EQAAVGIAHLAPDGRWLRVNQRLCQMLGYGREQLLRLTFQDITHPDDLDKDLGLTRQL
                     LAGEIPRLSLEKRYLHRDGGVLWANLSATLVRRTNGEPHYFISVVEDIGVRKQQEFAL
                     HQAATVFESTQEAVVIVDARRRILTSNPAFSAMSGLSPEDALQRR"
BASE COUNT          308 a          672 c          625 g          230 t
ORIGIN      
        1 gcgacgagga cggcagcctg cacggcagcg tgcagaacgt cagcgtccag aagcgcgacg
       61 aaccggccct gcgcgagagc gagcagcgct ttcgccagtt gttcgagcag acgccccaca
      121 tcgccgtgca gggctacgac agcgagcgcc gggtgatctt ctggaaccag gccagcgcac
      181 gcctttacgg ctacagcctg gccgaggcgc tgggccggcg cctggaggac ctgatcgtgc
      241 cgccggcgat gcggccgcag ctgatcagcg acgtcagcgc ctggatgatc ggcggcccgg
      301 ccatccccgc cgccgagctg accctgcggc accgcgacgg ccgcgaggtc cacgtgttct
      361 ccagccacct gatgctgcgc aacgcgcgca accagctgga gatgtactgc ctcgacatcg
      421 acctcggcca gcagaaggcc gcgcaccagg aactggaggc cagcgaggcg cgctaccgcg
      481 agctggtgga acagctgcac gaggcgatct tcctcgccga cggcggcggc cgactgacct
      541 tagtcaaccc ggcctggcag accatcaccg gctacagcat ccagcagagc atcggccacg
      601 cgctgctcga cttcatcgag gaggatcaac gcgaggaagt gggcctgcac atctccgcga
      661 tcctcgcccg ccaggagagc agctggctgg gcgagctgcg cctgcgcgac atcgacggcc
      721 gcacgcactg ggtgtcgctg cgcctggccg ccggggccca gcacggcctg ggcctgcgcg
      781 gcagcctcag cgacattcag gagcggcgcc acagccaggc cctgcaggag gcgcgcaacg
      841 cggtgctcga ccggctgctg gcgcaacgcc cgctggaaga gagcatgaac gacatggccc
      901 agcgcctgga gcggatcagc cccggcatgc tggtgtcgat catgcgcctg gaaaacggcg
      961 agctgcacct gctggccgcg cccagcctgc cgaccggctt cacccgtgcg gtcaacggca
     1021 ttccggcgcg gcgcgacctc ggcagctgcg gccacgccgc cgccagcggc gagctgacca
     1081 tcgtcgagga catccgccag catcccaact gggcggactt cgaggaggcg gcaagcgcgg
     1141 cgggcctgcg ggcctgctgg tcgctgccgt tcaagaacga gcagaacgag gtgctcggcg
     1201 tgttcggcat ctactaccgg cgcccggcac gaccgacccc cgacgacatc cagctggtca
     1261 ccgacttcac ccgcctggcc ggcctcgccg tgcgccagca gcagcacgac gccgagcgcc
     1321 tgcaaagcga gctgcgcttt cgcgcgacct tcgagcaggc cgccgtcggc atcgcccacc
     1381 tggcgccgga cggtcgctgg ctgcgggtca accagcgcct gtgccagatg ctcggctacg
     1441 gccgcgagca gctgctgcgg ctgaccttcc aggacatcac ccacccggac gacctggaca
     1501 aggacctggg cctgacccgc cagttgctgg ccggcgagat cccgcggctg agcctggaga
     1561 agcgctacct gcaccgcgac ggcggggtgc tctgggccaa cctcagcgcg accctggtgc
     1621 gccgcaccaa cggcgagccg cactacttca tctcggtggt cgaggacata ggcgtgcgca
     1681 agcagcagga gttcgccctg caccaggccg ccacggtgtt cgagagcacc caggaggcgg
     1741 tggtcatcgt cgacgcgcgg cggcgcatcc tcaccagcaa cccggccttc tccgccatga
     1801 gcgggttgag cccggaggac gccctgcagc ggcgc
//
LOCUS       DATIHC010000842         2166 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_22169, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000842 DATIHC010000000
VERSION     DATIHC010000842.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2166)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2166)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2166
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22169"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..140
                     /locus_tag="VLF16_14100"
     CDS             <1..140
                     /locus_tag="VLF16_14100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ribosomal protein S19 family protein"
                     /protein_id="HSX72058.1"
                     /translation="LTIAVHNGRQHVPVLVNEDMVGHKLGEFAATRTYRGHAADKKAK
                     R"
     gene            154..486
                     /gene="rplV"
                     /locus_tag="VLF16_14105"
     CDS             154..486
                     /gene="rplV"
                     /locus_tag="VLF16_14105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003304070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HSX72059.1"
                     /translation="MEVAAKLSGARISAQKARLVADQIRGKKVGEALNLLAFSNKKAA
                     EIMKKVLESAVANAEHNEGADVDDLKVSTVFVNEGRSLKRIMPRAKGRADRIVKRSCH
                     ITVKVADK"
     gene            500..1186
                     /gene="rpsC"
                     /locus_tag="VLF16_14110"
     CDS             500..1186
                     /gene="rpsC"
                     /locus_tag="VLF16_14110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003176422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HSX72060.1"
                     /translation="MGQKVHPVGIRLGIVKEHTSVWYADKRQYADYLLADLKVREYLQ
                     DKLKSASVSRIDIARPAQTARVTIHTARPGIVIGKKGEDVEKLRQDLTKQMGVPVHIN
                     IEEIRKPELDAMLVAQSVAQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVSGRLGGA
                     EIARTEWYREGRVPLHTLRADIDYSTYEAHTTYGVIGVKVWIFKGEVIGGQLEESKPA
                     APAPRKKAAK"
     gene            1199..1612
                     /gene="rplP"
                     /locus_tag="VLF16_14115"
     CDS             1199..1612
                     /gene="rplP"
                     /locus_tag="VLF16_14115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HSX72061.1"
                     /translation="MLQPKRTKFRKQMTGHNRGLAHRGSKVSFGEFALKAVSRGRLTA
                     RQIEAARRALTRHVKRGGKIWIRVFPDKPVTKKPLEVRMGKGKGGVEYWVAQIQPGKV
                     LYEIEGVPEELAREAFALAAAKLPLATSFVKRTVM"
     gene            1612..1803
                     /gene="rpmC"
                     /locus_tag="VLF16_14120"
     CDS             1612..1803
                     /gene="rpmC"
                     /locus_tag="VLF16_14120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002555481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HSX72062.1"
                     /translation="MKAKELREKSVQQLNEQLLGLLRDQFNLRMQKATGQLGQSHLLS
                     QVKRDIARVKTVLNQQAGK"
     gene            1806..2072
                     /gene="rpsQ"
                     /locus_tag="VLF16_14125"
     CDS             1806..2072
                     /gene="rpsQ"
                     /locus_tag="VLF16_14125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HSX72063.1"
                     /translation="MAEAQKTVRTLTGRVVSDKMDKTITVLIERRVKHPIYGKYVKRS
                     TKLHAHDENNQCKIGDKVTIRETRPLAKTKSWALVEIVERAVEV"
     gene            2095..>2166
                     /locus_tag="VLF16_14130"
     CDS             2095..>2166
                     /locus_tag="VLF16_14130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012728338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uL14 family ribosomal protein"
                     /protein_id="HSX72064.1"
                     /translation="MIQTQSMLDVADNSGARRVMCIKV"
BASE COUNT          507 a          612 c          648 g          399 t
ORIGIN      
        1 gtctgaccat tgctgtgcat aacggtcgtc aacatgtccc ggtcctcgtg aacgaagaca
       61 tggtcggcca caaactcggc gagttcgctg ctacccgcac ctaccgtggg cacgctgcgg
      121 acaagaaagc caagcgttaa ggggtaagga aagatggaag tagccgctaa gctgtcgggc
      181 gctcgaatct ccgcccagaa agcccgcttg gtcgccgacc agatccgcgg gaagaaggtg
      241 ggcgaagcgc tcaacctcct ggctttctcc aacaagaaag ctgccgagat catgaagaaa
      301 gtgctggagt cggccgttgc caacgccgag cacaacgaag gcgcagacgt cgatgacctc
      361 aaggtcagca ccgtcttcgt caacgaaggg cgttcgctta agcgcatcat gccgcgtgcc
      421 aagggccgtg ctgatcgcat cgtcaagcgg tcttgccata tcactgtcaa ggttgcggac
      481 aagtaacgga gtcgatcaga tgggtcagaa agtacatccc gtaggcattc gcctgggaat
      541 cgtcaaggag cacacctccg tctggtacgc agacaagcgt caatacgctg attatctgct
      601 ggccgacctg aaggttcgtg agtatctcca ggacaaacta aaaagcgcgt ccgtaagccg
      661 catcgacatc gcgcgtccgg ctcaaaccgc acgcgtcacc atccacactg cccgtcccgg
      721 tatcgtgatt ggcaagaagg gtgaagacgt cgagaagctg cgtcaggacc tgaccaagca
      781 aatgggtgtg ccggtgcaca tcaacatcga ggaaatccgc aagccggaac tcgatgccat
      841 gctggttgca cagagcgtgg ctcagcagct ggagcgtcgc gtcatgttcc gtcgcgcaat
      901 gaagcgcgcc gtacagaacg ccatgcgcat tggtgccaag ggcatcaaga tccaggtaag
      961 tggtcgtctc ggcggcgcgg aaatcgcccg taccgagtgg tatcgcgaag gtcgtgtgcc
     1021 cctgcacacc ctgcgtgccg atatcgatta ctccacctac gaggcgcaca ccacttacgg
     1081 tgtgatcggt gtgaaggtgt ggatcttcaa gggcgaggtc atcggtggcc agctcgaaga
     1141 gtccaagcct gccgctccgg cgccgcgtaa gaaagctgct aagtaaggag tacgcaacat
     1201 gctgcaaccc aagcgtacaa aattccgcaa gcagatgacc ggccacaacc gtggtctggc
     1261 tcatcgcggt agcaaggtca gcttcggcga gttcgccctg aaagctgttt cccgtggtcg
     1321 cctgactgct cgtcagattg aggcagcccg tcgcgccctc actcgtcacg ttaagcgtgg
     1381 cggcaagatc tggatccgcg tgttcccgga caagccggtt accaagaagc ccctcgaagt
     1441 tcgtatgggt aaaggtaagg gtggcgtgga gtactgggta gcccagatcc agccgggcaa
     1501 ggtgctgtac gagatcgaag gtgttccgga agagctggcg cgtgaggctt ttgccctggc
     1561 tgctgcgaag ctgcccctcg ccacctcctt tgttaagcgg acggtgatgt gatgaaagcg
     1621 aaagaactcc gtgaaaaatc ggttcagcag ctgaacgagc aactgctcgg tctgctgcgt
     1681 gaccagttca atctgcgtat gcagaaggcg actggtcagc tggggcagtc tcacctgctc
     1741 tcgcaagtga agcgcgacat cgctcgcgtg aagactgtgc tcaaccagca ggcaggtaag
     1801 tgatcatggc tgaagctcag aaaaccgtcc gtacgctgac cggccgtgtc gtcagcgaca
     1861 agatggacaa gaccatcacc gttctgatcg agcgtcgcgt aaagcacccg atctacggta
     1921 agtacgtgaa gcgttcgacc aagctgcacg cccacgacga gaacaaccag tgcaagatcg
     1981 gcgacaaggt caccattcgt gagacccgtc cgctggccaa gaccaagtcc tgggccctgg
     2041 tggaaatcgt cgaacgtgcc gtggaagtct aaggactaag ggtcggagaa agatatgatt
     2101 cagactcaat ccatgctcga cgtcgctgac aacagcggtg ctcgtcgcgt tatgtgcatc
     2161 aaggtc
//
LOCUS       DATIHC010000843         2605 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27003, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000843 DATIHC010000000
VERSION     DATIHC010000843.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2605
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27003"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..350
                     /locus_tag="VLF16_14135"
     CDS             <1..350
                     /locus_tag="VLF16_14135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HSX72065.1"
                     /translation="IVFSLDSVIAAVGMVSHVPVMVAAIIVAVLVMMLAAGTISDFID
                     KHPSLKMLALAFLVVVGTVLIAEAFEVHVPKGYVYFAMAFSLGVEALNIRMRVLKGRK
                     EDPVKLRKDMPGE"
     gene            complement(432..1604)
                     /locus_tag="VLF16_14140"
     CDS             complement(432..1604)
                     /locus_tag="VLF16_14140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72066.1"
                     /translation="MFKHWMTLLVVLALPPATFAADGAQLYSGTIGRMDVVAELDLSD
                     PGRITGRYFYRKYLHDLRLEGTAQGARLSLREGRHRYGDETRPELRLQRTARGWQGEW
                     LGLQGKRLPVELTPLLVEEPPAGAEPFWYRLYAESPYEFLRLKASPLTPGKRERFMGH
                     DLQWWHEPVSGLAAFEILDGYSQAQLDLINQRLRERLREEVIGYHACRLNAGVGWAEF
                     SQKVTPRLLAADIVSLSIFTSYDCGGAHPDFGDAPLTLSARTGEPLGLEDLLWVGEGS
                     AFRYRELPNRQPDEGSVSFGVFSGYRSRDFAPWLVEQWRRIAPFEVPPPGEEDECDYG
                     DPEMWDFPSWYLGEKGIVFDPLLPRADRACEAPEWSVLPYELVRQHPGRLNLRLPE"
     gene            complement(1697..>2605)
                     /locus_tag="VLF16_14145"
     CDS             complement(1697..>2605)
                     /locus_tag="VLF16_14145"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding/OmpA
                     family protein"
                     /protein_id="HSX72067.1"
                     /translation="GWSPRTDEVVAESAGAAKMLVSNRNLLVVADILVVNKGFASAHP
                     DKVKGLVHGLLEGNRLLRDDPQAHAAVVAQAFGWTQQETLDELSKVHLSNLPENLAFF
                     DGSIDSAGSFQGIFQSSVLAYGALIKNPADPARFANLEHLKALQADGQFKDQTISIAP
                     IRTSGKVALEGDALLSKDIRFFFEANSAELDKDAKANQDYLDTIKKFLQVSPGSIVLL
                     RGHVDNAMVPDFERQGGPALVKSMALKAMELSRQRTLAVKAALLDRHPGIAEERIELV
                     GRGWEEPIGQDSEQNRRVEVQWFTLE"
BASE COUNT          431 a          887 c          844 g          443 t
ORIGIN      
        1 acatcgtgtt cagcctggac tcggtgatcg ccgccgtcgg catggtctcc cacgtgccgg
       61 tcatggtcgc cgcgatcatc gtcgccgtgc tggtgatgat gctggccgcc ggcaccatca
      121 gcgacttcat cgacaagcac ccgtcgctga agatgctggc cctggccttc ctggtcgtgg
      181 tcggtaccgt gctgatcgcc gaagccttcg aagtccacgt gccgaagggc tacgtctact
      241 tcgccatggc cttctcgctg ggcgtcgaag cgctgaacat ccgcatgcgc gtgctcaaag
      301 gtcgcaagga agacccggtg aagctacgca aggacatgcc gggcgagtaa gcccgagagc
      361 gcagacagag gaacggggcc gaatggcccc gttttttatt gcctgcttcg ccgcggatca
      421 ccgcgactgg cctactccgg caagcgcaga ttcaaccggc cggggtgctg cctgaccagt
      481 tcgtagggca gcaccgacca ctcgggcgct tcgcaggcac ggtccgcacg cggcaagagc
      541 ggatcgaaga cgatgccctt ttcgccgaga taccagctgg ggaaatccca catctccggg
      601 tcgccgtaat cgcattcgtc ctcctcgccg ggcggcggaa cctcaaacgg cgcgatccgc
      661 cgccactgct cgaccagcca gggcgcgaag tcccggctgc gatagcccga gaacacaccg
      721 aagctcaccg agccctcgtc cggctggcga ttgggcaact cccgatagcg gaacgccgat
      781 ccctcaccga cccagagcag atcctccagg ccgagcggct cgccggtgcg agcactcaac
      841 gtgagcgggg catcgccgaa gtccggatgg gcgccgccgc agtcatagct ggtgaaaatg
      901 ctcaggctga cgatatctgc cgccagcagc cgcggcgtca ccttctgcga gaactctgcc
      961 cagcccacgc ccgcgttcag acggcatgcg tggtagccga tcacttcttc gcgcaggcgc
     1021 tcgcgcagcc gctggttgat gagatccagc tgcgcctggg aataaccgtc caggatctcg
     1081 aacgcggcca ggccggaaac cggctcgtgc caccattgca agtcgtgccc catgaagcgc
     1141 tcgcgcttgc caggcgtcag cggcgaagcc ttcaagcgca ggaattcgta gggagactcc
     1201 gcataaaggc gataccagaa cggctcggcg ccagccggcg gttcctcgac aagaagcggg
     1261 gtcagttcga ccggcaggcg cttgccctgc agtcccagcc attcgccctg ccagccacga
     1321 gcggtgcgct gcaggcgcag ctcgggccgt gtctcatcgc catagcggtg acgcccttcg
     1381 cgcaggctga gccgcgcccc ctgtgcagtg ccctccaggc gcaggtcgtg caggtacttg
     1441 cgatagaagt agcgcccggt gatccgcccg gggtcgctca ggtcgagctc cgccaccacg
     1501 tccattcggc ctatcgtccc gctgtacagc tgcgcgccgt ccgcggcgaa tgtcgccggg
     1561 ggcagcgcca gcacgaccag cagggtcatc cagtgtttga acacgtcctt gttctccttg
     1621 ccaacagcag cgagtcggtc aataaaaaac accggctaca ggccggtgtt ttcgagcgcg
     1681 cgggccacct cccgcctcac tccagggtga accactgcac ctcgacgcgg cggttctgct
     1741 cgctgtcctg gccgattggc tcttcccagc cgcggccgac cagctcgatg cgttcctcgg
     1801 cgatgccggg gtggcggtcc agcaaggcgg ccttcaccgc cagggtgcgc tggcgcgaca
     1861 gctccatggc cttcagcgcc atgctcttga ccagcgccgg gccgccctgg cgctcgaaat
     1921 ccggcaccat ggcgttgtcc acgtggccgc gcagcagcac gatggagccg gggctgacct
     1981 ggaggaattt cttgatggtg tccaggtagt cctggttggc cttggcgtcc ttgtccagct
     2041 cggccgagtt ggcctcgaag aagaagcgga tgtccttgct cagcagggcg tcgccctcca
     2101 gcgcgacctt gccgctggtg cggatcggcg cgatggagat ggtctggtcc ttgaactggc
     2161 catcggcctg cagcgccttg aggtgctcca ggttggcgaa tcgcgccggg tcggccgggt
     2221 tcttgatcag cgcgccgtag gccagcacgg aggactggaa gatgccctgg aaggagccgg
     2281 ccgagtcgat gctgccgtcg aagaacgcca ggttctcggg caggttgctc aggtgcacct
     2341 tgctcagctc gtcgagggtc tcctgctggg tccagccgaa cgcctgggcg accacggcgg
     2401 cgtgcgcctg agggtcatcg cgcagcaggc ggttaccttc cagcaggccg tggaccaggc
     2461 ccttgacctt gtccgggtgg gcgctggcga agcccttgtt gaccaccaga atgtccgcca
     2521 ccaccagcag gttgcggttg gagaccagca tcttcgccgc gccggcggac tcggccacca
     2581 cctcgtcggt gcgcggcgac cagcc
//
LOCUS       DATIHC010000844         3827 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_22179, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000844 DATIHC010000000
VERSION     DATIHC010000844.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3827)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3827)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3827
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22179"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..182
                     /locus_tag="VLF16_14150"
     CDS             <1..182
                     /locus_tag="VLF16_14150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HSX72068.1"
                     /translation="ASLVEQAFVMDPEVKVGDLVKKAGAEIVSFTRYEVGEGIEKVEA
                     DFAAEVAAQVAAAKQ"
     gene            340..1083
                     /gene="pyrH"
                     /locus_tag="VLF16_14155"
     CDS             340..1083
                     /gene="pyrH"
                     /locus_tag="VLF16_14155"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003244202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HSX72069.1"
                     /translation="MAQQVSGRQPRYKRILLKLSGEALMGSEEFGIDPKVLDRMALEV
                     GQLVGIGVQVGLVIGGGNLFRGAALSAAGMDRVTGDHMGMLATVMNALAMRDALERSN
                     IPALVMSAISMVGVTDHYDRRKAMRHLSTGEVVIFAAGTGNPFFTTDSAACLRAIEIE
                     ADLVLKATKVDGVYTADPFKDPNAEKFDHLTYDEVLDRKLGVMDLTAICLVRDHKMPL
                     RVFNMNKPGALLNIVVGGAEGTLIEEDAQ"
     gene            1080..1637
                     /gene="frr"
                     /locus_tag="VLF16_14160"
     CDS             1080..1637
                     /gene="frr"
                     /locus_tag="VLF16_14160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HSX72070.1"
                     /translation="MINEIKKDAQERMVKSLESLGRNLASIRTGRAHPSILDSVKVPA
                     YGSDMPLNQVAAITVEDARTLKIVAHDKTLSAAIEKAIMTSDLGLNPSSAGTTIRVPM
                     PALTEETRKGYTKQARGVAEDAKVAVRNVRRDALAELKKLSKDKEISEDEERRAADEV
                     QKLTDKFVADIDKALEAKEADLMAV"
     gene            1639..2400
                     /gene="uppS"
                     /locus_tag="VLF16_14165"
     CDS             1639..2400
                     /gene="uppS"
                     /locus_tag="VLF16_14165"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl diphosphate synthase"
                     /protein_id="HSX72071.1"
                     /translation="MNKAKQDVAAAVPRHVAIIMDGNNRWAKKRLLPGVAGHKAGVDA
                     VRAVIEVCAESGVEVLTLFAFSSENWQRPAEEVGALMELFLSALRREARRLKDNAISL
                     RIIGDRSRFHPELQAAMREAELQTAGDNRFVLQIAANYGGQWDIAQAAQRLAREVQAG
                     HLQPEDITPGLLQGCLATADLPPPDLCIRTGGEHRISNFLLWQLAYSELYFSDLYWPD
                     FKHEAMRQALADFATRQRRFGKTSDQVEAEARSQC"
     gene            2394..3209
                     /locus_tag="VLF16_14170"
     CDS             2394..3209
                     /locus_tag="VLF16_14170"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019472221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HSX72072.1"
                     /translation="MLKQRIITALILLPIALGGFFLLDGGAFALFIAVVVALGAWEWA
                     RLAGLEAQPLRVAYAALVAVLIYGAWLAPALAPWLLGAAVLWWLAATLLVLNYPESSR
                     YWGGLSGKLLIGLLILLPAWQGLVLLKQWPQANALIIAVMVLVWAADVGAYFSGKAFG
                     KRKLAPRVSPGKSWEGFYGGLATSLLLTLAVGLQQGWQVVDLLLALAGAALVVAVSVI
                     GDLTESMFKRQSGIKDSSNLLPGHGGVLDRIDSLTAAIPVFAVLLWLAGWGVQ"
     gene            3206..>3827
                     /locus_tag="VLF16_14175"
     CDS             3206..>3827
                     /locus_tag="VLF16_14175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017682435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HSX72073.1"
                     /translation="MSQPQQITVLGASGSIGLSTLDVIARHPQRYQAFALSGFSRLGE
                     LERLCLQHRPRFAVTADEASARALQDTLRGAGLTTRVLAGEGGLCEVAAHPQVDAVMA
                     AIVGAAGLKPTLAAVRAGKKVLLANKEALVMSGDLFMQAVKEHGATLLPIDSEHNAIF
                     QCLPGDYARGLGTVGVRRILLTASGGPFRQTPLDELERVSPEQACAH"
BASE COUNT          664 a         1218 c         1279 g          666 t
ORIGIN      
        1 aagccagcct ggtcgagcaa gccttcgtga tggatccgga agtcaaggtc ggtgacctgg
       61 tcaagaaagc cggcgccgaa atcgtttcct tcacccgcta cgaagtgggc gagggcatcg
      121 agaaggtcga ggccgacttc gccgccgaag tggctgctca ggtcgccgct gccaagcagt
      181 aagacggttc taaactgtcg catcgaagag gctgcccgct cgcgcgtgca gcctcttttg
      241 caaagagcgg gagcacatct cgcagcaaat tcgccgggca gcggtctgac tgccaggtag
      301 aatgaaatta gccaaacaac gccgcaggag agatacgcaa tggctcagca ggtgagtggt
      361 cgtcaacctc gctacaaacg cattctgctc aagttaagcg gcgaagccct gatgggttcg
      421 gaagagttcg gcatcgatcc caaggtgctg gatcgaatgg cgcttgaagt cggccagctg
      481 gttggcatcg gcgtacaggt cggtctggtg atcggtggtg gcaacctgtt ccgtggcgcg
      541 gcgctgtccg ccgccggcat ggatcgcgtc accggagacc acatgggcat gctggccacc
      601 gtgatgaatg ccctggccat gcgtgatgcc ctggagcgtt ccaatatccc cgcgctggtg
      661 atgtcggcca tctcgatggt cggtgtgacc gatcattacg accgccgcaa ggccatgcgc
      721 cacctgtcca ccggcgaggt ggtgatcttc gccgccggta ccggcaaccc cttcttcacc
      781 accgactcgg cggcctgcct gcgcgccatc gagatcgagg ccgacctggt gctgaaagcc
      841 accaaggtcg atggcgtgta cactgccgac cccttcaagg accccaatgc ggagaagttc
      901 gatcacctga cctacgacga ggtgctcgac cgcaagctgg gcgtgatgga cctgacggcc
      961 atctgcctgg tgcgcgacca caagatgccg ctgcgggtct tcaatatgaa caagccaggc
     1021 gccctgctga acatcgtggt gggtggcgcc gaaggaaccc tgatcgagga ggatgcacaa
     1081 tgatcaacga gatcaaaaag gacgcccagg agcgtatggt caaatccctg gagtctctgg
     1141 gacgcaacct ggcctccatc cgcaccggcc gcgcgcatcc gagcattctg gatagcgtca
     1201 aggttccggc ctacggcagc gacatgccgc tgaaccaggt tgccgcgatc accgtggaag
     1261 acgcccgtac cctgaagatc gtcgcccacg acaagaccct gagcgcggca atcgagaagg
     1321 ccatcatgac ttccgacctc ggcctgaacc cgagcagcgc cggcaccacc attcgcgtgc
     1381 cgatgccggc cctgaccgag gagacccgca agggttacac caagcaggcg cgtggcgttg
     1441 ccgaagatgc caaggtggcc gtgcgcaacg tgcgtcgcga tgccctggcc gagctgaaga
     1501 agttatccaa ggacaaggaa atcagcgaag acgaagagcg tcgtgctgcc gatgaggtgc
     1561 agaagctcac cgacaagttc gtcgccgaca tcgacaaggc cctggaagcc aaagaagccg
     1621 acctgatggc ggtgtgatgt gaacaaagcc aagcaggacg tcgcggcggc ggtaccccgg
     1681 catgtcgcca tcatcatgga tgggaacaac cgctgggcga agaagcgcct gctgcccggc
     1741 gtggccggcc acaaggccgg cgtcgatgcg gtgcgtgccg tcatcgaggt ctgcgccgag
     1801 tccggcgtcg aggttttgac cctgttcgcc ttctccagtg agaactggca gcgcccggcc
     1861 gaagaggtcg gcgcgctgat ggaactgttc ctcagcgccc tgcgccgtga ggcgcgtcgg
     1921 ctcaaggaca acgccatcag cctgcgcatc atcggcgatc gttcgcgctt ccacccggaa
     1981 ttgcaggccg ccatgcgtga ggccgaattg cagaccgccg gggataaccg cttcgtcctg
     2041 cagatcgccg ccaactatgg cggtcagtgg gatatcgccc aggccgccca gcgcctggcg
     2101 cgtgaggttc aggccggcca tctgcagccg gaggacatca cgcccggcct gctgcagggc
     2161 tgcctcgcca ctgccgacct gccgccaccg gatctgtgca tacgcaccgg cggcgagcat
     2221 cgcatcagca acttcctgct ctggcagcta gcgtattccg agctgtattt ctccgacctg
     2281 tactggccgg atttcaagca cgaggccatg cgtcaggcat tggccgattt cgccacccgc
     2341 cagcgtcgct tcggcaagac cagcgaccag gtggaagccg aggctcgcag ccaatgctga
     2401 aacagcgaat catcaccgcc ctgatcctgc tgcccatcgc cctgggtggt ttctttctgc
     2461 tggatggcgg ggctttcgcc ctgttcattg ccgtcgtggt agcgctcggc gcctgggagt
     2521 gggcgcggct ggccggcctc gaggcgcagc cattgcgtgt ggcctatgcg gcgctggtgg
     2581 cggtgctgat ctacggcgcc tggctggcgc cggcgctggc accctggctg ctcggcgccg
     2641 ccgtgctctg gtggctggcg gcgacgctgc tggtgctgaa ctaccccgag agcagtcgct
     2701 actggggcgg cttgtccggg aagctgctga tcggcctgct gatcctgttg ccggcctggc
     2761 agggcctggt gttgctcaag cagtggcccc aggccaatgc cctgatcatc gcggtcatgg
     2821 tgctggtgtg ggcggccgac gtcggcgcct atttctccgg caaggccttc ggcaagcgca
     2881 agctcgcgcc gcgggttagc cccggcaaga gctgggaggg cttctacggc ggtctggcca
     2941 cgagtctgtt gctgaccctg gcggtcggac tgcagcaggg atggcaggtc gtcgacctgc
     3001 tgttggcgct ggcgggtgcc gcgctggtgg ttgccgtttc ggtcatcggc gacctgaccg
     3061 agagcatgtt caagcgccag tccggcatca aggacagcag caacctgctg cccggtcacg
     3121 gcggcgtgct cgatcgtatc gacagcctga ccgccgccat tccggtattc gccgtgctgc
     3181 tctggctcgc gggatggggc gtgcagtgag tcagccgcaa cagatcaccg ttctgggagc
     3241 cagcggctcc atcggcctca gtaccctcga tgtgatcgcg cggcatccgc agcgttacca
     3301 ggcgttcgcg ctgagcggct tttctcgcct gggtgagctg gagcgcctct gtctgcagca
     3361 tcgtccccgg ttcgccgtga ccgccgacga ggcgagtgca cgcgccttgc aggacacgct
     3421 tcgcggcgcc ggtctgacga cgcgcgtgct ggcgggcgag ggcgggctct gtgaggtggc
     3481 tgcccatcct caggtggacg ccgtgatggc cgccatcgtc ggcgccgcgg gcctgaagcc
     3541 gaccctggcg gcggtgcggg cgggcaagaa ggtgctgctg gccaacaagg aggcgctggt
     3601 gatgtccggc gacctcttca tgcaggcggt gaaggagcac ggcgccacgc tgctgccgat
     3661 cgacagcgag cacaacgcga tcttccagtg cctgcccggc gactatgcgc gcggcctcgg
     3721 cacggtaggg gtgcggcgca tcctgttgac ggcatcaggc ggcccgttcc gccaaacgcc
     3781 attggacgag ctggagcggg tttcccccga gcaggcctgt gcccatc
//
LOCUS       DATIHC010000845         2560 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_24522, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000845 DATIHC010000000
VERSION     DATIHC010000845.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2560)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2560)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2560
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24522"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..103
                     /locus_tag="VLF16_14180"
     CDS             <1..103
                     /locus_tag="VLF16_14180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphatase"
                     /protein_id="HSX72074.1"
                     /translation="APGDWSELGMYRPLPEDLSPLWERFDHARAATA"
     gene            117..749
                     /locus_tag="VLF16_14185"
     CDS             117..749
                     /locus_tag="VLF16_14185"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HSX72075.1"
                     /translation="MSQFFQVHPENPQPRLIKQAVEILRSGGVIVYPTDSSYAIGCLI
                     GDKGAVERIRRLRQLDDKHNFTLVCSDLSQIGLFAKVDTGAFRLLKAHTPGPYTFILG
                     ATREVPRMLLHPKRRTIGLRVPAHPIALALAEQLGEPLMSVSLILPGDDLPMSDPYEM
                     RQILEHQVDLIIDGGYGGLEASTVINLAEGEPEVIRVGCGDPSPFQDDAA"
     gene            746..1564
                     /locus_tag="VLF16_14190"
     CDS             746..1564
                     /locus_tag="VLF16_14190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003457148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ScpA family protein"
                     /protein_id="HSX72076.1"
                     /translation="MSEVAEQDSQAGAQQELPFALVYGQAVTELPIDLYIPPDALEVF
                     LEAFEGPLDLLLYLIRKQNIDILDIPVAEITKQYMGYVELMKSVRLELAAEYLVMAAM
                     LAEIKSRMLLPRSAEAEDEEDDPRAELIRRLQEYERYKAAAEGLDELPRVGRDISVPR
                     LDAPEARARKLLPDVSLEELLLSMAEVLRRADMFESHQVTREALSTRERMSEVLERLK
                     GAGFVPFVTLFTAEEGRLGVVVTFMAVLELIKEQLVELVQNEPFAPIHVRARAE"
     gene            1564..2349
                     /gene="scpB"
                     /locus_tag="VLF16_14195"
     CDS             1564..2349
                     /gene="scpB"
                     /locus_tag="VLF16_14195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003457150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HSX72077.1"
                     /translation="MNLNDPKELASLLEAWLLAQGRPLSLERLGELFEEAERPEPAQI
                     REALEVLRQSCEGRAFELKEVASGYRLQVREKFAPWVGRLWEERPQRYSRAMLETLSL
                     IAYRQPITRGEIEDIRGVAVNSQIVKTLQERDWIRVVGYRDVPGKPAMFATTRAFLDY
                     FNLKSLEELPPLAALRELEPEPMLALDDEVPVPAALQARVDAELGDEAPAEPREETSF
                     RSLLVELDQMEQGLKTDFSDLPQAAEESEEDQGETLDAGDSVH"
     gene            2426..>2560
                     /locus_tag="VLF16_14200"
     CDS             2426..>2560
                     /locus_tag="VLF16_14200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003460967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1289 domain-containing protein"
                     /protein_id="HSX72078.1"
                     /translation="MSKNPCIKVCEFDADICVGCGRSKHEIKGWKMLGKAERMALLAE
                     A"
BASE COUNT          437 a          852 c          873 g          398 t
ORIGIN      
        1 cgcccccgga gactggtcgg agctgggcat gtaccgtccg ttgccggaag acctgtctcc
       61 tctgtgggag cgtttcgacc atgcacgcgc tgctaccgcc tgaacaggga gagttcatga
      121 gccagttctt ccaggttcac ccggagaacc cgcaaccgcg gctgatcaag caggcggtgg
      181 agatcctgcg tagcggcggg gtgatcgtct atcccaccga ttcctcctac gccatcggct
      241 gcctgatcgg cgacaagggc gcggtggagc gcatacgccg cctgcgccag ctggacgaca
      301 agcacaactt caccctggtg tgcagcgacc tgtcacagat cggcctgttc gccaaggtcg
      361 acaccggcgc cttccgcctg ctcaaggcgc atacgccggg gccctacacc ttcatcctcg
      421 gcgccacccg cgaggtgccg cgcatgctgc tgcaccccaa gcgccgcacc atcggcctgc
      481 gcgtgccggc gcaccccatc gccctggcgc tggccgagca gctgggcgag ccgctgatga
      541 gcgtgagcct gatcctgccc ggtgacgacc tgccgatgag cgacccctac gagatgcgcc
      601 agatcctcga gcaccaggtc gacctgatca tcgacggcgg ctacggcggg ctggaggcct
      661 ccaccgtgat caacctggcc gagggcgagc cggaggtgat ccgcgtcggc tgcggcgatc
      721 cgagcccgtt tcaggatgac gcggcatgag tgaggttgcc gaacaggaca gccaggccgg
      781 cgcccagcag gagctgccgt ttgccctggt gtacggtcag gcggtcaccg agctgccgat
      841 cgacctgtac atcccgccgg atgctctcga agtgttcctc gaggccttcg agggcccgct
      901 ggacctgctg ctgtacctga tccgcaagca gaacatcgac atcctcgaca tccccgtggc
      961 cgagatcacc aagcagtaca tgggctacgt cgagctgatg aagtcggtgc gcctggagct
     1021 ggccgccgag tacctggtga tggccgccat gctggccgag atcaagtcgc gcatgctgct
     1081 gccgcgttcg gccgaagccg aggacgagga agacgacccg cgcgccgagc tgatccgccg
     1141 cctgcaggag tacgagcgct acaaggccgc cgccgagggc ctggacgagc tgccgcgggt
     1201 cggtcgtgac atcagcgtgc cgcgcctcga cgcccccgag gcgcgggcgc gcaagctgct
     1261 gccggatgtg agcctggagg agttgctgct gtccatggcc gaggtactgc gccgcgccga
     1321 catgttcgag agccaccagg tgacgcgcga ggcgctgtcc acccgcgagc gcatgagcga
     1381 ggtgctggag cgcctcaagg gcgctggctt cgttccgttc gtcacgctgt tcacggccga
     1441 ggagggccgg ctcggcgtgg tggtcacctt catggcggtg ctcgaactga tcaaggaaca
     1501 gctggtggaa ctggtgcaga atgagccctt cgcgcctatc cacgtccgtg cccgagccga
     1561 atgatgaacc tgaacgaccc gaaggaactc gcctccctgc tcgaagcctg gctgctggcc
     1621 cagggtcggc cgctgtcgct ggagcgcctt ggcgagctgt tcgaggaagc cgagcgcccg
     1681 gaaccggcgc agatccgcga ggccctggaa gtgctgcgcc aatcctgcga gggacgcgcc
     1741 ttcgagctga aggaagtggc ctccggctac cggctgcagg tgcgcgagaa gttcgcgccc
     1801 tgggtcggcc ggctgtggga ggagcgcccg cagcgctact cgcgcgccat gctcgagact
     1861 ctgtcgctga tcgcctatcg ccaaccgatc acccgcggcg agatcgaaga catccgcggc
     1921 gtggcggtta acagccagat cgtcaagacc ctgcaggagc gcgactggat tcgcgtggtc
     1981 ggttaccgcg acgtcccggg caagccggcg atgttcgcca ctacccgcgc ctttctcgac
     2041 tatttcaacc tgaagagcct ggaagagctg ccgccgcttg ccgccctgcg cgagctggag
     2101 cccgaaccga tgctggcgct ggacgacgag gtgccggtgc cggcggcgct gcaggcacgg
     2161 gtggatgccg agctgggcga cgaagcgccg gccgagccgc gcgaggaaac cagcttccgc
     2221 agcctgctgg tggagctgga ccagatggag caggggctga agaccgattt cagcgacctg
     2281 ccgcaggccg ccgaggaatc cgaggaggac cagggcgaaa ccctggacgc cggcgactcc
     2341 gtgcattgag gggattgaga cattcaatcc cggcctgcgg ccgtctcggc ctaagctggc
     2401 ggcgccttct cccacaggtg ccgccatgag caagaatccc tgcatcaagg tctgcgagtt
     2461 cgacgccgat atctgcgtcg gctgcgggcg cagcaagcac gaaatcaagg gctggaagat
     2521 gctcggcaag gccgaacgca tggccttgct ggccgaggcc
//
LOCUS       DATIHC010000846         1689 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_15348, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000846 DATIHC010000000
VERSION     DATIHC010000846.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1689
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15348"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            2..1006
                     /gene="lpxB"
                     /locus_tag="VLF16_14205"
     CDS             2..1006
                     /gene="lpxB"
                     /locus_tag="VLF16_14205"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013792505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008915 - lipid-A-disaccharide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HSX72079.1"
                     /translation="MEAEGLVSAFPMERLAVMGLVEVLGRLRELLGRRKRLIRDLIAA
                     KPDVFIGIDAPDFNLTLELRLRQAGIRTVHYVSPSVWAWRQKRVLKIREACDLMLTLF
                     PFEARFYLEHQVPVRFVGHPLANTIPLQADRAGAREALGLAQDESVVALLPGSRGGEV
                     ARLGALFLDAAERLRALRPGVRFVLPCANAERRAQLEAMLAGRNLPLMLLDGRSHEAL
                     AACDAVLIASGTATLEALLHKRPMVVAYKVAPLTYRILRRLVKSPYISLPNLLAERML
                     VPELIQDAATPDALAQTLAPLLDDGAVQTEGFDVIHRALRQDASQQAADAVLKLVGEA
                     "
     gene            1006..1614
                     /gene="rnhB"
                     /locus_tag="VLF16_14210"
     CDS             1006..1614
                     /gene="rnhB"
                     /locus_tag="VLF16_14210"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HSX72080.1"
                     /translation="MQLGLDFALVEELVAGVDEVGRGPLCGPVVTAAVILDPARPIAG
                     LNDSKKLTEARREKLFDEIREKALAWCIARAEVEEIDQLNILHATMLAMQRAVQGLSV
                     TPKLALIDGNRCPKLAVPSAPVVGGDAQVPAIAAASILAKVSRDREMAALDALYPGYG
                     IAGHKGYPTPVHLEALKRLGATPIHRRSFAPVREALEAAGQQ"
BASE COUNT          243 a          583 c          579 g          284 t
ORIGIN      
        1 catggaggcc gaggggctgg tctccgcgtt ccccatggag cgcctggcgg tgatggggct
       61 ggtcgaggtg ctcgggcgtc tgcgcgagct gctgggccgg cgcaagcgcc tgatcaggga
      121 cctgattgcc gctaagccgg atgtgttcat cggcatcgat gcgccggact tcaacctgac
      181 cctggaactc aggttgcgcc aggccgggat ccgcaccgtg cactacgtca gtccctccgt
      241 ctgggcctgg cggcagaagc gcgtgctgaa gatccgcgag gcctgcgacc tgatgctgac
      301 cctgttcccc ttcgaggcgc gcttctacct ggagcatcag gtgccggtgc gcttcgtcgg
      361 tcatccgctg gccaacacca tcccgctgca agccgatcgc gccggcgctc gcgaggcgtt
      421 gggcctggcc caggacgaaa gcgtcgtggc gctgctgccg ggcagtcgcg gcggcgaagt
      481 ggcgcgcctg ggggcgctgt tcctcgatgc cgccgagcgc ctgcgcgcgc tgcgtcccgg
      541 cgtgcgcttc gtgctgccct gcgccaacgc cgagcgccgc gcccagctgg aagccatgct
      601 cgccggtcgt aacctgccgc ttatgctgct cgacggccgc tcccacgagg cgctggccgc
      661 ctgcgacgcg gtgttgatcg cctccggcac cgcgactctc gaggcgctgc tgcacaagcg
      721 gcccatggtg gtggcctaca aggtggcgcc gctgacctat cgcattctcc ggcgtctggt
      781 gaagagtccc tatatctcgc tgcccaacct gctggccgag cgcatgctgg tgccggagct
      841 gatccaggat gccgcgacgc cagacgccct ggctcagacc ctggcaccgc tgctggacga
      901 cggtgcggtg cagacagagg gcttcgacgt gatccaccgg gccctgcgcc aggacgcctc
      961 gcaacaggct gccgatgccg tgctcaagct ggtgggagag gcctgatgca gctcggtctg
     1021 gatttcgccc tggtcgagga gctggtcgcc ggtgtcgacg aagtcggccg cggcccgctc
     1081 tgcggtccgg tggtcaccgc cgcggtgatt ctcgacccgg cgcggccgat cgccggcctc
     1141 aacgattcaa agaagctcac cgaggcacgc cgcgagaagc tgttcgacga gatccgcgag
     1201 aaggccctgg cctggtgcat cgcccgcgcc gaagtcgagg agatcgacca gctcaacatc
     1261 ctgcatgcca ccatgctggc catgcagcgc gcggtacaag gcctgagcgt tacgccgaag
     1321 ctggcgctga tcgacggcaa ccgttgcccg aaactggcgg tgcccagcgc accggtggtc
     1381 ggtggtgacg cccaggtgcc agccatcgcg gcggcatcga tcctggccaa ggtcagtcgt
     1441 gatcgcgaga tggctgcgct ggatgcgctc tatccgggct atggcatcgc cgggcacaag
     1501 ggctacccca cgcccgtcca tctggaagcc ctcaaacgcc tgggtgccac gcccattcac
     1561 cggcgctcct tcgcgccggt gcgcgaggcg ctggaggcgg ccggccagca gtagacggcg
     1621 gctgcccttt gtcaccaggc ccggtacaat ccgggccttc ttgtttctgt gtcaccaacg
     1681 ggattgcca
//
LOCUS       DATIHC010000847         1637 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17670, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000847 DATIHC010000000
VERSION     DATIHC010000847.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1637
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17670"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..658
                     /locus_tag="VLF16_14215"
     CDS             <1..658
                     /locus_tag="VLF16_14215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSX72081.1"
                     /translation="IEAARAGESGRGFAVVAGEIRDLAEKTASATQDIVRETADIQNV
                     IRTAQQEIQEHTGSARHFHAMTTEASAAMLEVHGQAQRMHHEIGRSFFRAGIEQANLA
                     ELSLKASVYEAILGGDGDTHLPTEEECLFGRWYYGQGNAELQGNREFRLIEQPHEQVH
                     RSGAEAIEAFAAGRLEVALQRLASMEDANLEVMRIVGRVLAEHDKGLATPERPRLRAV
                     "
     gene            complement(662..1381)
                     /locus_tag="VLF16_14220"
     CDS             complement(662..1381)
                     /locus_tag="VLF16_14220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011268232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FadR/GntR family transcriptional regulator"
                     /protein_id="HSX72082.1"
                     /translation="MTVAPSPPEAPLKRGHSLAHDLVSELSQRILLGKLKPGDKLPSE
                     NLLVDEHRVSRTVVREALSKLQASGLVETRRGIGTFVLARTAPEGLRLGLDTATGVRD
                     ILELRMGLEAQAAALAAVRRCDEQLAAMRRALDDYQDLAAAGDSCAEADRRFHLLIAE
                     ATGNPCFVEIMAHLGESMIPRKRIGQNERAGDNLARHAFLANLEHEAILAAIRRRDGE
                     AARAAVWLHLSNSRDRFSPAE"
BASE COUNT          275 a          576 c          540 g          246 t
ORIGIN      
        1 catcgaggcg gcccgcgccg gcgagtccgg ccgcggcttc gccgtggtcg ccggcgagat
       61 ccgcgacctg gcggagaaga ccgccagcgc cacccaggac atcgtccgcg agacggcgga
      121 cattcagaac gtgatccgca ccgcgcagca ggagatccag gaacacaccg gcagcgcccg
      181 ccacttccac gccatgacca ccgaggccag cgccgccatg ctcgaggtcc acggccaggc
      241 ccagcgcatg caccacgaga tcggccgctc gttcttccgc gccggcatcg agcaggccaa
      301 cctcgccgag ctgtcgctca aggcctcggt ctacgaggcc atcctcggcg gcgacggcga
      361 cacccacctg cccaccgagg aggaatgcct gttcggccgc tggtactacg gccagggcaa
      421 cgccgagctg cagggcaacc gcgaattccg cctgatcgag cagccccatg aacaggtgca
      481 ccgcagcggc gccgaggcca tcgaggcctt cgccgccggc cggctggagg tcgccctgca
      541 gcgcctggcg agcatggagg acgccaatct cgaggtgatg cgcatcgtcg gccgcgtgct
      601 ggccgagcac gacaagggcc tggccacgcc ggagcgcccg cgcctgcgcg cggtgtgacc
      661 cttactcggc gggcgagaag cgatcgcggc tgttggacag gtgcagccag accgccgccc
      721 gcgccgcttc gccgtcgcgc cgacggatcg ccgccaggat cgcctcgtgc tccagattgg
      781 cgaggaaggc gtggcgcgcc aggttgtcgc cggcgcgctc gttctggccg atgcgcttgc
      841 gcggaatcat cgactcgccc agatgcgcca tgatctcgac gaaacacgga ttgccggtgg
      901 cctcggcgat cagcaggtgg aagcgccggt ccgcctcggc gcagctgtcc cccgctgccg
      961 ccaggtcctg atagtcgtcc agcgcccggc gcatggccgc cagttgctcg tcgcagcgcc
     1021 gcaccgcggc cagcgccgcg gcctgggcct ccaggcccat gcgcagctcg aggatgtcgc
     1081 gcacgccggt ggcggtgtcc aggcccaggc gcaatccctc cggcgccgtg cgcgccagca
     1141 cgaaggtgcc gatgccgcgc cgcgtctcca ccagccccga ggcctgcagc ttggaaagcg
     1201 cctcgcgcac caccgtgcgg ctgacccggt gctcgtccac cagcaggttt tccgagggca
     1261 gcttgtcgcc cggcttgagc ttgcccagca ggatgcgctg gctgagctcg ctgaccaggt
     1321 catgggccag gctgtggccg cgtttgagcg gggcttcggg cggggacggg gcgacggtca
     1381 tggcgagtct ccagaggcgg tatgacaagt atcgccacgc cgcgacggaa tcgacaaggc
     1441 agacttgtat tacaagtaaa aaatatggcc ccttgaggct gatcaagatc gcctcaacgc
     1501 ctgtgcatga agtctgattt tatcggcaag atagcgtcat taatgtcgat ttatctgctt
     1561 gtatagcact attttcccta acgaaatcca cttgtcatac gactcggagc gctcctaaga
     1621 tcggcgtcat cgacatg
//
LOCUS       DATIHC010000848         1577 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17675, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000848 DATIHC010000000
VERSION     DATIHC010000848.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1577
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17675"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..354
                     /locus_tag="VLF16_14225"
     CDS             <1..354
                     /locus_tag="VLF16_14225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017526065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HSX72083.1"
                     /translation="EILRAAIASIDRGQWEAAASIGMGKAQTLYRAILPQAARTALPP
                     LGNSFISLVKDTALAATIQVPELFRQAQLITARTFEIFTMYLAAALIYWVLASILAHF
                     QSRLEARVNRHEQDS"
     gene            354..1103
                     /gene="tcyN"
                     /locus_tag="VLF16_14230"
     CDS             354..1103
                     /gene="tcyN"
                     /locus_tag="VLF16_14230"
                     /EC_number="7.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003455817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015424 - ABC-type amino acid transporter
                     activity [Evidence IEA];
                     GO_process: GO:0003333 - amino acid transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine ABC transporter ATP-binding protein
                     TcyN"
                     /protein_id="HSX72084.1"
                     /translation="MISVRNLRKAFKGQEVLKGIDLDVAPGEVVAIIGPSGSGKTTLL
                     RCLNLLEEPSGGQITVGSIAIDADQPLKAQQGLVRKLRQHVGFVFQNFNLFPHRTALE
                     NVIEGPVQVKKEPRAQAVERARALLAKVGLSGKEDAYPKRLSGGQQQRVAIARALAMQ
                     PDVILFDEPTSALDPELVGEVLATIRGLAEEKRTMVIVTHEMSFARDVANRAVFIDQG
                     VIVEQGDARTLFSAPKEERTRQFLSKFLVER"
     gene            complement(1123..>1577)
                     /locus_tag="VLF16_14235"
     CDS             complement(1123..>1577)
                     /locus_tag="VLF16_14235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015079 - potassium ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="KUP/HAK/KT family potassium transporter"
                     /protein_id="HSX72085.1"
                     /translation="VRGTAVFLTARSDAVPHALLHNLLHNQVLHEQIVLLTVVSEDEP
                     RLAPERRFEVEAYGDGFFRVILHFGFMEETDVPAALRLCHLDALDFSPMSTTWFLSRE
                     TVVASKRFGMARWREALFAFLLRNANSNLRFFRLPLNRVIELGTQVEI"
BASE COUNT          278 a          572 c          500 g          227 t
ORIGIN      
        1 gagattctgc gcgccgccat cgcctccatc gaccgcggcc agtgggaagc ggcggcgagc
       61 atcggcatgg gcaaggcgca gaccctgtac cgcgccatcc tgccccaggc cgcgcgcacc
      121 gcgctgccgc cgctgggcaa cagcttcatc tcgctggtca aggacaccgc cctggccgcc
      181 accatccagg taccggaact gttccgccag gcgcagctga tcaccgcgcg caccttcgag
      241 atcttcacca tgtacctggc cgccgcgctg atctactggg tgctggccag catcctcgcg
      301 cacttccagt cgcgcctgga ggcgcgggtc aaccggcacg agcaggactc ctgatgattt
      361 ccgtccgcaa cctgagaaag gccttcaagg gccaggaagt actcaagggc atcgacctgg
      421 acgtcgcccc cggcgaagtg gtggccatca tcggccccag cggctcgggc aagaccaccc
      481 tgctgcgctg cctcaacctg ctggaagagc ccagcggcgg gcagatcacc gtcggcagca
      541 tcgccatcga cgccgaccag ccgctcaagg cccagcaggg cctggtgcgc aagctgcgcc
      601 agcacgtcgg cttcgtgttc cagaacttca acctgttccc ccaccgcacc gccctggaga
      661 acgtcatcga gggcccggtg caggtgaaga aggagccgcg cgcccaggcc gtcgagcgcg
      721 cccgcgcgct gctcgccaag gtcggcctga gcggcaagga agacgcctat cccaagcgtc
      781 tctccggcgg ccagcagcaa cgcgtggcca tcgcccgcgc cctggccatg cagccggacg
      841 tgatcctgtt cgacgagcct acttcggccc tcgaccccga gctggtcggc gaggtgctgg
      901 cgaccatccg cggcctggcc gaggagaagc gcaccatggt catcgtcacc cacgagatga
      961 gcttcgcccg cgacgtggcc aaccgcgcgg tgttcatcga ccagggcgtg atcgtcgaac
     1021 agggcgatgc ccggacgctg ttcagcgcgc cgaaggaaga acgcacccgc cagttcctca
     1081 gcaagttcct ggtcgaacgc tagcgacgca ggctcacccg ggtcagatct cgacctgggt
     1141 ccccagctcg atcacccggt tcagcggcag cctgaagaag cgcaggttgc tgttggcgtt
     1201 gcgcagcaga aaggcgaaca gcgcctcgcg ccagcgcgcc atgccgaagc gcttgctcgc
     1261 caccaccgtc tcgcggctta ggaaccaggt ggtgctcatc gggctgaagt cgagtgcatc
     1321 cagatggcac aggcgcaggg ccgccggcac gtccgtttct tccatgaatc cgaagtgcag
     1381 gatcacccgg aagaagccgt cgccataggc ctccacctcg aagcgccgct ccggcgccag
     1441 acgcggctcg tcctcgctga ccaccgtcaa cagcacgatc tgctcgtgca gcacctggtt
     1501 gtgcagcagg ttgtgcagca gcgcgtgggg cacggcgtcc gagcgcgcgg tgaggaacac
     1561 cgcggtgccg cgcaccc
//
LOCUS       DATIHC010000849         2427 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_24594, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000849 DATIHC010000000
VERSION     DATIHC010000849.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2427)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2427)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2427
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24594"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2006)
                     /gene="lon"
                     /locus_tag="VLF16_14240"
     CDS             complement(<1..2006)
                     /gene="lon"
                     /locus_tag="VLF16_14240"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HSX72086.1"
                     /translation="MKTTIELPLLPLRDVVVYPHMVIPLFVGREKSIEALEAAMGGDK
                     QILLLAQRNPADDDPGEDALYRMGTVATVLQLLKLPDGTVKVLVEGEQRGAIEKFIEV
                     DDHYRAEVQLLDENAVAERESEVFTRSLLSQFEQYVQLGKKVPAEVLSSLNSIDEPSR
                     LVDTMAAHMVLKIEQKQEILEITGLAERVEHVLALLDAEIDLLQVEKRIRGRVKKQME
                     RSQREYYLNEQMKAIQKELGDIDEGHNEVDELKKRIENAGLPKEAYAKANAELNKLKQ
                     MSPMSAEATVVRSYIDWLTNVPWKAESKVRLDLGKAEDILEADHFGLEEVKERILEYL
                     AVQKRVKKLKGPVLCLVGPPGVGKTSLAESIARATNRKFVRMALGGVRDEAEIRGHRR
                     TYIGSMPGRLIQKLTKVGVRNPLFLLDEIDKMGSDMRGDPASALLEVLDPEQNHNFND
                     HYLEVDYDLSDVMFICTANSMNIPGPLLDRMEVIRLPGYTEDEKVNIAIKYLTPKQVQ
                     ANGLKKGELEFEEAAIRDIIRYYTREAGVRSLERQISKVCRKAVKEHAKEKRIKVLVT
                     SDSLEHYLGVRRYRHGLAELEDQIGQVTGLAWTQVGGELLTIETAVVPGKGQLIKTGS
                     LGDVMAESMTAALTVVRSRAKSLGIPLDFHEKRDVHIHMPEGATP"
     gene            complement(2150..>2427)
                     /locus_tag="VLF16_14245"
     CDS             complement(2150..>2427)
                     /locus_tag="VLF16_14245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003239947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HSX72087.1"
                     /translation="QYAKLFEMEGVDLEFRADALKAVANRALERKTGARGLRSILEGV
                     LLDTMYEIPSQTEVSKVVIDESVIEGSSKPLLIYENSEPPAKAAPDA"
BASE COUNT          406 a          779 c          737 g          505 t
ORIGIN      
        1 ggcgtggcgc cttccggcat gtggatgtgc acgtcacgct tctcgtggaa gtccagcggg
       61 atgcccaagc tcttggcacg actgcgcacc acggtcagcg cggcggtcat ggactcggcc
      121 atcacgtcgc ccagcgagcc ggtcttgatc agctggccct tgcccggcac cacggcggtc
      181 tcgatggtca gcaactcgcc gccgacctgg gtccaggcca gaccggtgac ctggccgatc
      241 tggtcttcaa gttcggccag gccatggcga taacgccgca cgccgaggta gtgctcgagc
      301 gaatccgagg tgaccaacac cttgatgcgc ttctccttgg cgtgctcctt taccgccttg
      361 cggcagacct tggaaatctg ccgctccagg ctgcgtacgc cggcctcgcg ggtgtagtag
      421 cggatgatgt cgcggatcgc cgcctcttcg aactccagct cacccttctt cagaccgttg
      481 gcctggacct gtttgggcgt gaggtacttg atggcgatgt tgaccttctc gtcctcggtg
      541 tagcccggca ggcggatgac ttccatgcgg tccagcagcg gaccggggat gttcatggag
      601 ttggcggtgc agatgaacat cacgtccgag aggtcgtagt cgacctccag gtagtgatcg
      661 ttgaaattgt ggttctgctc ggggtccagc acctccaaga gcgccgaagc cggatcgccg
      721 cgcatgtcgc tacccatctt gtcgatttca tcgagcagga acagtggatt gcgcacgccg
      781 accttggtca gcttctggat caagcggcca ggcatggagc cgatgtaggt gcggcggtgg
      841 ccacgaatct cggcttcgtc acgcacgccg cccagggcca tgcgcacgaa cttgcgattg
      901 gtggcacgcg cgatggactc agccagcgag gtcttgccca cgccaggcgg gccgaccagg
      961 caaagcacag gccccttgag cttcttcacc cgcttttgca cggcgaggta ctcgaggatg
     1021 cgctccttca cttcctccag gccgaaatgg tcggcttcga ggatgtcctc ggccttgccc
     1081 agatccaggc gcaccttgct ctcggccttc cacggcacgt tggtcagcca gtcgatgtaa
     1141 gagcggacca cggtggcctc ggccgacatc ggcgacatct gcttgagctt gttcagctct
     1201 gcgttggcct tggcataggc ctccttgggc aggcccgcgt tctcgatgcg cttcttcagc
     1261 tcatcgactt cgttgtggcc ctcgtcgata tcgcccagtt ccttctgaat ggccttcatc
     1321 tgctcattca ggtagtactc gcgctgactg cgctccatct gcttcttgac ccggccacgg
     1381 atgcgcttct cgacctgcag caggtcgatc tcggcgtcta ggagtgccag cacgtgctcg
     1441 acacgctcgg ccagaccggt gatctcgaga atctcctgct tctgctcgat cttcagcacc
     1501 atgtgcgcgg ccatggtatc gaccagacgc gacggctcat cgatgctgtt cagcgacgac
     1561 agcacctcgg caggaacctt cttgcccagc tgtacatact gttcgaactg gctcagcagg
     1621 ctgcgggtga agacctcgga ctcgcgctcg gcgaccgcat tttcgtccag cagctggacc
     1681 tcggcgcggt agtggtcatc cacctcgatg aacttctcga tggcgccgcg ctgctcgcct
     1741 tccaccagca ccttcacggt gccgtccggc agtttgagca gctgcagtac ggtggccacg
     1801 gtacccatgc ggtacagcgc atcctcaccc ggatcatcgt ctgccggatt gcgctgcgcc
     1861 agcagaagga tctgcttgtc gccgcccatc gcggcctcca gggcctcgat ggacttctcg
     1921 cgaccgacga acagcgggat gaccatgtgc ggatagacca cgacatcacg cagcggcagc
     1981 agtggcaatt cgatggttgt cttcatgatt ttcagctcta cggcggccat tcggccgtaa
     2041 acggacgggg tacccttgga cctaagatgg ggccacccct gggaaaaaac aagcgagaga
     2101 ggcggaaaag caaagggccc ctaagggccc tttgtttcag cgctggacgt caggcgtccg
     2161 gagcggcctt ggccggcggc tcgctgttct cgtagatcag cagcggcttg gagctgcctt
     2221 cgatgacgct ctcgtcgatc accaccttgc tgacttcggt ctgcgaaggg atctcgtaca
     2281 tggtgtcgag cagcacacct tcgaggatcg aacgcaggcc acgcgcaccg gtcttgcgct
     2341 cgagcgcgcg gttggccacc gccttgagcg catcggcgcg gaactcgagg tctacgcctt
     2401 ccatctcgaa gagcttggcg tattgct
//
LOCUS       DATIHC010000850         3727 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17709, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000850 DATIHC010000000
VERSION     DATIHC010000850.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3727
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17709"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            120..1316
                     /locus_tag="VLF16_14250"
     CDS             120..1316
                     /locus_tag="VLF16_14250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003461497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmoprotectant NAGGN system M42 family
                     peptidase"
                     /protein_id="HSX72088.1"
                     /translation="MHRLPEPDLGYLRQVLLELLAIPSPTGFTDTVVRYVAERLDELK
                     IPFELTRRGTIRATLRGRQSSPDRAVSAHLDTIGAIVREIKDSGRPALAPVGCWSSRF
                     AEGSRVSLFTDHSVLRGSVLPLMASGHAFNTQVDSLPVSWEHIELRLDAPCYSRAECE
                     ALGVSVGDFVAFDPLPEFTDSGHISARHLDDKAGVAALLTALKAVVDSGLEPQIDCHP
                     LFTITEEVGSGAAAALPWDVSEFVGIDIAPVAPGQQSTEHAVSVALQDSGGPYDYHLS
                     RHLLRLAGEQDIPVRRDLFRYYHSDAQSAVTAGHDIRVALLAFGCDATHGYERTHIDS
                     LAALTRLIGAYLLSPPVFASDAKPAQEHSLERFSHQIEHDAQMASDTQVPNLDSVLGA
                     RPESSD"
     gene            1421..>3727
                     /locus_tag="VLF16_14255"
     CDS             1421..>3727
                     /locus_tag="VLF16_14255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016253108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7TM diverse intracellular signaling
                     domain-containing protein"
                     /protein_id="HSX72089.1"
                     /translation="MPRLCLAMLLLCLSGPLWALAPAPLDRDELRLSLAPYMGYYRDR
                     DGRLEADAVQHLPDGAFQQVRGDHANLGKNDSVWWFKVRLVNSRPQPLSGYLEVNYAL
                     LDRIDVFLQDEHGRLQRQSSGDSYAFAQRPVQVRHFWFPMTLPHGSNTVLVRVQSTST
                     VFVPMFFSTHGASAAAQENLMGINGAFYGVLFAMFIYNLFLFISLRERAYLWYLVYNV
                     NVGLFAACFDGMLFKLLPEHVGLQSVSIYVLMYLHCLTAAQFSRHFLHIPQHFPRLDQ
                     GMRVLMLGIVGCLLSVPLIGLAAWNILASLAVLCMSLILLLTGIYAWRRGVRHGSYYV
                     LAWSVLLVAFMLVTSGSLGVEIFGIYGSAVVKVGVTIELLSLSIGLADRINLLKEEGF
                     RSRRAAEQAEYENQAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPLDRNQRFYVDTIS
                     SSGSSLMAVINDILDYARIESGKLSLEEIEFDLEQMISETLVLFTAQALEKRLRLYVR
                     LEGGVPRRIQGDPTRLKQVLMNLLGNALKFTQEGQVSLSVSRRSDSQGGQHLVFAVSD
                     SGVGIHADSLGQLFRSFAQGDSSTTRRYGGSGLGLAISKELVEMMAGHIEVQSTPGQG
                     SRFAFNIPLRSAADDNDELLALLENRSALLCSLDSQGLDCLGHLLGRWGMRTQRCQDP
                     ERLREYLEDFTAPPLLVLMAPWPGSSGHWLDSLRPHLESGQRVLILSPPEQHQQLPDS
                     RGLRLLAQPLPLSVVGLRDALQELYSERR"
BASE COUNT          585 a         1356 c         1181 g          605 t
ORIGIN      
        1 cccgctgagc cgcgcccatc cctgaggcgc atctgcccct cactgctgcg cgggacgcgg
       61 ggcctcggcc ccgctcccgc tgcacaccgc tgaactcggc acgtcctgag gaggatttca
      121 tgcatcgtct gcccgaaccc gacctcggct acctgcgcca ggtcctgctg gaactgctgg
      181 ccattcccag ccccaccggc ttcaccgaca ccgtggtgcg ctacgtggcc gagcgcctgg
      241 acgaattgaa gatacccttc gagctgaccc gccgcggcac catccgcgcc accctgcgcg
      301 gacgccagtc cagcccggac cgggccgtct cggcgcacct ggacaccatc ggcgccatcg
      361 tccgcgagat caaggacagc gggcgcccgg ccctggcgcc ggtgggttgc tggtccagcc
      421 gcttcgcaga aggcagccgg gtcagcctgt tcaccgatca cagcgtgctg cgcggcagcg
      481 tgctgccgct gatggcctcc ggccacgcct tcaacactca ggtcgacagc ctgccggtga
      541 gctgggaaca catcgagctg cgcctcgacg cgccctgcta cagccgcgcc gaatgcgagg
      601 cgctgggcgt ttcggtgggc gatttcgtcg ccttcgatcc gctgccggaa ttcaccgaca
      661 gcggccacat cagcgcccgc cacctggacg acaaggccgg cgtggccgca ctgctgaccg
      721 cgctcaaggc cgtcgtcgac agcggccttg agccgcagat cgactgtcac ccgctgttca
      781 ccatcaccga ggaagtgggc tcgggggctg cggcggccct gccctgggac gtcagcgagt
      841 tcgtcggtat cgacatcgcc ccggtggcgc ccggccagca gtccaccgaa catgcggtga
      901 gcgtggccct gcaggattcc ggcggcccgt acgactatca cctgtcgcgc cacctgttgc
      961 gtctggccgg cgagcaggac attccggtgc gccgcgacct gttccgctac taccacagcg
     1021 atgcccagtc ggcggtgacc gccggccacg acatccgcgt cgccctgctg gcatttggct
     1081 gcgacgccac ccacggctac gagcgcaccc acatcgacag cctggccgcg ctgacccgcc
     1141 tcatcggcgc ctacctgctc agcccgccgg tgttcgcctc ggacgccaag ccggcccagg
     1201 agcattcact ggagcgcttc agccatcaaa tagagcacga cgcgcagatg gccagcgaca
     1261 cccaggtgcc caacctggac agcgtgctcg gagcgcgccc ggaaagcagc gactaagctt
     1321 cccttcccgg ccgcgcgcag gctctgcggc ggccgcttga aggctggccg acaactaggc
     1381 aaagtgctgg cataaccgat aagaaagatg aggtaggcca atgcctcgct tgtgtctggc
     1441 catgttgctg ctctgcctga gcgggccgct gtgggcactg gccccggcgc cactggatcg
     1501 cgacgagctg cgtctgtccc tggcgccgta catgggctat taccgcgacc gcgacggccg
     1561 gctggaggcc gacgcggtgc agcacctgcc ggacggcgcg ttccagcagg tccgcggcga
     1621 tcacgccaac ctgggcaaga acgactccgt atggtggttc aaggtgcgcc tggtcaacag
     1681 ccgcccgcag ccgctgtccg gctacctgga agtcaactac gccctgctcg accgcatcga
     1741 tgtcttcctg caggacgaac acggccgcct gcaacggcag tccagcggcg acagctacgc
     1801 cttcgcccag cgcccggtgc aggtgcgcca cttctggttc cccatgaccc tgccgcacgg
     1861 cagcaacacc gtgctggtgc gggtgcagag caccagcacc gtcttcgtgc cgatgttctt
     1921 cagcacccat ggcgccagcg cggccgccca ggaaaacctg atgggcatca atggcgcgtt
     1981 ctacggcgtg ctgttcgcca tgttcatcta caacctgttc ctgttcatct cgctgcgcga
     2041 gcgggcctac ctctggtacc tggtgtacaa cgtcaacgtc ggcctgttcg ccgcctgctt
     2101 cgacggcatg ctgttcaagc tgctgcccga gcacgtgggc ctgcagtcgg tgagcatcta
     2161 cgtgctgatg tacctgcact gcctgaccgc cgcccaattc agccgccatt tcctgcacat
     2221 cccgcagcac ttcccgcgcc tggaccaggg catgcgcgtg ctgatgctgg gcatcgtcgg
     2281 ctgcctgctg tcggtaccgc tgatcggcct cgcggcctgg aacatcctcg ccagcctggc
     2341 ggtgctgtgc atgtcgctga tcctgctgct caccggcatc tacgcctggc gccgcggcgt
     2401 gcgccacggc tcttactacg tgctggcgtg gagcgtgctg ctggtggcct tcatgctggt
     2461 caccagcggc tctctgggcg tggagatctt cggcatctac ggctcggcgg tggtgaaagt
     2521 gggcgtgacc atcgagctgc tcagcctgtc catcggcctg gccgatcgca tcaacctgct
     2581 caaggaagaa ggtttccgct cgcgccgcgc ggccgaacag gccgaatacg agaaccaggc
     2641 caagagccgc ttcctggcca agatgagcca cgagatccgc accccgctca acggcgtgct
     2701 gggcatgctg cagctgctgc gcgagacccc gctggaccgc aaccagcgct tctatgtcga
     2761 caccatcagc agttccggca gctcgctgat ggcggtgatc aacgacatcc tcgactacgc
     2821 ccgcatcgag tccggcaagc tcagcctgga ggagatcgag ttcgacctgg agcagatgat
     2881 ctccgaaacc ctggtgctgt tcaccgccca ggccctggag aaacgcctgc gcctctacgt
     2941 ccgcctggag ggcggcgtgc cgcggcgcat ccagggcgac ccgacgcggc tcaagcaggt
     3001 gctgatgaac ctgctgggca acgccctgaa gttcacccag gagggccagg tgtcgctctc
     3061 ggtgagccgg cgcagcgaca gccagggcgg ccagcacctg gtcttcgccg tcagcgacag
     3121 cggcgtcggc atccatgccg acagcctcgg ccagctcttc aggtccttcg cccagggcga
     3181 ctccagcact acccgccgct acggcggcag cggcctgggc ctggccatca gcaaggagct
     3241 ggtggaaatg atggctggcc atatcgaggt gcagagcacg cccggccagg gctcgcgctt
     3301 cgccttcaat atcccgctgc gcagcgccgc ggacgataac gacgagctgc tggcgctgct
     3361 ggagaaccgc tccgccctgc tctgctcgct cgacagccag ggcctcgact gcctgggtca
     3421 cctgctcggc cgctggggca tgcgcaccca gcgctgccag gacccggagc ggctgcgcga
     3481 atacctggag gatttcaccg cgccaccgct gctggtgctg atggcgccct ggccgggcag
     3541 cagcgggcac tggctcgaca gcctgcgccc gcacctggag agcggccagc gcgtgctcat
     3601 cctcagcccg ccggagcagc accagcaact gccggacagc cgcggcctgc gcctgctcgc
     3661 ccaaccgctg ccgctgtcgg tggtcggcct gcgcgacgcg ttgcaggagc tgtacagcga
     3721 gcggcgc
//
LOCUS       DATIHC010000851         1604 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_24617, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000851 DATIHC010000000
VERSION     DATIHC010000851.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1604
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24617"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..664
                     /locus_tag="VLF16_14260"
     CDS             <1..664
                     /locus_tag="VLF16_14260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_248757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HSX72090.1"
                     /translation="DEVTTLFHEFGHGLHHLLTRVEHAGASGINGVAWDAVELPSQFM
                     ENWCWEPEGLALISGHYESGEPLPQALLDKMLAAKNFQSGLMMVRQLEFSLFDFELHA
                     THGDGRSVLQVLEGIRDEVAVIRPPAFNRFANSFAHIFAGGYAAGYYSYKWAEVLSAD
                     AFSKFEEDGVLNPATGRAFREAILARGGSQAPMVLFVDFRGREPSIDALLRHLGLSQE
                     AA"
     gene            664..921
                     /locus_tag="VLF16_14265"
     CDS             664..921
                     /locus_tag="VLF16_14265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003458102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheV family putative zinc ribbon protein"
                     /protein_id="HSX72091.1"
                     /translation="MSEPKKRFIAGAVCPACSAMDTIKMWDEDGTPHRECVACGYADT
                     LNAQGQSVPREIGTRVNQAAAKPAASKGQTVQFFPNPKLKK"
     gene            1043..>1604
                     /locus_tag="VLF16_14270"
     CDS             1043..>1604
                     /locus_tag="VLF16_14270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012020210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HSX72092.1"
                     /translation="MSVSLPPRGRGTASNPHNRFAPTRSEAEDDGWFQEETPPCRATE
                     VRAERARTVITRNQSPDVGFDRSVNPYRGCEHGCIYCFARPSHAYWDLSPGIDFETRL
                     IAKTNLAERLEEELSKPGYTPQPIALGINTDAYQPIEREQRLTRQALEILLRFRHPLH
                     IITKSSLILRDLDLLQELASRNLVSVA"
BASE COUNT          281 a          553 c          517 g          253 t
ORIGIN      
        1 cgatgaagtc accaccctgt tccacgagtt cggccacggc ctgcaccatc tgctgacccg
       61 cgtcgagcat gccggtgcct ccggcatcaa cggcgtggcc tgggatgcgg tggagctgcc
      121 gagccagttc atggagaact ggtgctggga gcccgagggc ctggcgctga tctccggcca
      181 ttacgagtcc ggcgagccgc tgcctcaggc gctgctggac aagatgctgg cggcgaagaa
      241 cttccagtcc ggcctgatga tggtgcgcca gctggagttc agcctgttcg acttcgagct
      301 gcacgccact cacggcgacg gccgcagcgt gctgcaggtg ctcgaaggca tccgcgatga
      361 ggtggcggtg atccgtccgc cggccttcaa ccgcttcgcc aacagtttcg cgcacatctt
      421 cgccggcggt tacgcggccg gttactacag ctacaagtgg gcggaagtgc tgtccgccga
      481 cgccttctcc aagttcgagg aagacggcgt gctcaacccg gccaccggcc gcgccttccg
      541 cgaagcgatc ctggcccgtg gtggctccca ggcgccgatg gtgctgttcg tcgacttccg
      601 cggccgcgag ccgagcatcg acgccctgct gcgccacctc ggcctgagcc aggaggcggc
      661 gtgatgagcg agccgaagaa gcgcttcatc gccggcgccg tgtgcccggc gtgtagcgcg
      721 atggacacca tcaagatgtg ggacgaggac ggcacgccgc accgcgaatg cgtggcctgc
      781 ggctacgccg acaccctcaa cgcccagggc cagtcggtac ccagggaaat cggcacccga
      841 gtcaaccagg ccgccgccaa gccggcggcg agcaagggcc agacggtgca gttcttcccc
      901 aatcccaagc tgaagaagta ggccgccgct cgaactgccc ggccatggga tggcgcgggc
      961 agctgcaaac gaccgagcgg tactggtcga atgcagacaa aacgaatact gttcatgcgt
     1021 acagtttttg tcgagtctcg ccatgtccgt ttcccttccg ccgcgcggcc gcggcaccgc
     1081 cagcaatccg cacaatcgct tcgccccgac ccgcagcgag gccgaggacg atggctggtt
     1141 ccaggaagaa acgccgccct gccgcgccac cgaggtgcgc gcggagcggg ccaggacggt
     1201 gatcacccgc aaccagtcgc cggatgtcgg cttcgaccgt tcggtgaatc cctatcgcgg
     1261 ctgcgagcat ggctgcatct attgtttcgc ccggcccagc cacgcctatt gggacctgtc
     1321 gccggggatc gacttcgaga cccggctgat cgccaagacc aacctggccg agcgcctgga
     1381 ggaggagctg agcaagcccg gctatacacc gcagccgatc gccctgggca tcaataccga
     1441 cgcgtatcag ccgatcgagc gcgagcaacg cctgacgcgc caggcgctgg agatcctgct
     1501 gcgcttccgc catccgctgc acatcatcac caagagctcg ctgatcctgc gcgacctcga
     1561 cctgctgcag gagctggcca gtcgcaacct ggtcagcgtg gcgt
//
LOCUS       DATIHC010000852         2856 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_24621, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000852 DATIHC010000000
VERSION     DATIHC010000852.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2856)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2856)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2856
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24621"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            3..1259
                     /gene="secY"
                     /locus_tag="VLF16_14275"
     CDS             3..1259
                     /gene="secY"
                     /locus_tag="VLF16_14275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013970639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HSX72093.1"
                     /translation="MFLAIIVYRIGAHIPVPGINPDRLADLFRQNEGTILSLFNMFSG
                     GALERMSIFALGIMPYISASIIMQLMTAVSPQLEQLKKEGEAGRRKISQYTRYGTLVL
                     AVVQAVGMSVGLASQGVAFSDDFGFHFVAVTTFVAGAMFMMWLGEQITERGVGNGISM
                     LIFAGIVAGLPSAIGQSFESARQGDINIFALIAIGLLAVAIIGFVVFIERGQRRIAVH
                     YAKRQQGRKVFAAQTSHLPLKVNMAGVIPAIFASSLLLFPASLGTWFGQSEGMGWLQD
                     ISQAIAPGQPLNILLFSAGIIFFCFFYTALMFNPKDVAENLKKSGAFIPGIRPGEQSA
                     RYIDGVLTRLTMFGALYMTAVCLLPQFLQVAANVPFYLGGTSLLIVVVVVMDFMAQVQ
                     SHLMSHQYESLMKKANLKGYGGGMLR"
     gene            1291..1407
                     /gene="rpmJ"
                     /locus_tag="VLF16_14280"
     CDS             1291..1407
                     /gene="rpmJ"
                     /locus_tag="VLF16_14280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020322760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HSX72094.1"
                     /translation="MKVRASVKKLCRNCKVIRRDGVVRVICSAEPRHKQRQG"
     gene            1541..1897
                     /gene="rpsM"
                     /locus_tag="VLF16_14285"
     CDS             1541..1897
                     /gene="rpsM"
                     /locus_tag="VLF16_14285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HSX72095.1"
                     /translation="MARIAGVNIPDNKHTVISLTYIYGVGRTTAQKICATTGVNPAVK
                     IKDLSDEQIEQLRGEVAKLVTEGDLRREVNMKIKRLMDLGCYRGLRHRRGLPVRGQRT
                     KTNARTRKGPRKPIRK"
     gene            1928..2317
                     /gene="rpsK"
                     /locus_tag="VLF16_14290"
     CDS             1928..2317
                     /gene="rpsK"
                     /locus_tag="VLF16_14290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HSX72096.1"
                     /translation="MAKPAARTRKKVKKTVVDGIAHIHASFNNTIVTITDRQGNALSW
                     ATSGGSGFRGSRKSTPFAAQVAAERAGQAALEYGLKNLDVNVKGPGPGRESAVRALNA
                     CGYKIASITDVTPIPHNGCRPPKKRRV"
     gene            2334..>2856
                     /gene="rpsD"
                     /locus_tag="VLF16_14295"
     CDS             2334..>2856
                     /gene="rpsD"
                     /locus_tag="VLF16_14295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HSX72097.1"
                     /translation="MARYIGPKCKLSRREGTDLFLKSGARALESKCNIEAAPGQHGAR
                     RGRQSDYGTQLREKQKVRRIYGVLERQFSGYYKEAARRKGATGENLLQLLECRLDNVV
                     YRMGFGATRAESRQLVSHKAITVNGSTVNVPSYQIKAGDVVAVREKAKNQLRVAQALD
                     LCAQRGRVEWVEVD"
BASE COUNT          542 a          835 c          857 g          622 t
ORIGIN      
        1 ttctgttcct ggcgatcatc gtctatcgga tcggcgcgca cattccggtg cccggaatca
       61 accctgaccg gctggccgac ctgttccggc agaacgaggg gaccattctt agcctgttca
      121 acatgttctc cggcggtgcg ctggagcgga tgagcatctt cgcgctgggg atcatgccgt
      181 acatctcggc atcgatcatc atgcagttga tgaccgccgt cagcccgcag ctggagcagt
      241 tgaagaagga aggggaagct ggccgtcgca agatcagcca gtacacccgc tacggcactc
      301 tggtgctggc tgtcgttcag gccgtcggca tgtccgtcgg cctggcgagc cagggcgtcg
      361 cgttttccga tgatttcggc ttccacttcg tggcggtaac cacctttgtg gcgggtgcca
      421 tgttcatgat gtggctgggt gagcagatca ccgagcgcgg cgtcggcaac ggtatttcga
      481 tgctcatttt tgcgggcatc gtggccggcc tgccgtcggc gatcgggcag tctttcgagt
      541 ctgctcgtca gggcgatatc aacatcttcg ccctgatcgc catcggcctg ttggcggtag
      601 cgatcatcgg tttcgtggtg ttcatcgagc gtggtcagcg tcgcattgcg gtgcactacg
      661 ccaagcgtca gcagggccgc aaggtcttcg ctgcgcagac cagccacctg ccgctgaagg
      721 tgaacatggc gggcgtgatc ccggccatct tcgccagcag tctcctgctg ttcccggctt
      781 cgctgggtac ctggttcggt cagtccgagg gtatgggctg gcttcaggac atctcgcagg
      841 cgatcgctcc cggtcaaccg ttgaacattc tgctgtttag tgcagggatc atcttcttct
      901 gcttcttcta cacagcgctg atgttcaacc cgaaagacgt agcggaaaac ctgaagaagt
      961 ccggtgcctt tattccgggc atccgtccgg gcgagcaatc cgcgcgctat atcgatggcg
     1021 tgctgacccg cttgaccatg ttcggtgctc tgtacatgac ggccgtttgc ctcctcccgc
     1081 agttcctgca ggtggcagcc aacgttccgt tctaccttgg cgggacctcg ttgctgatcg
     1141 tggttgtggt tgtgatggac tttatggccc aagtgcaatc ccacctcatg tcgcaccagt
     1201 acgaatccct gatgaagaaa gccaacctga agggctatgg cggcggcatg ctccgctgac
     1261 atggttaccg taaggttcta ggagttactg atgaaagttc gtgcatcggt caagaagctg
     1321 tgccgcaact gcaaagtcat tcgtcgcgac ggcgtcgtgc gcgtgatctg cagcgcggag
     1381 ccgcgtcaca agcagcgcca aggctgagtg tgattcacgc gtaatgagcc cggcagctag
     1441 tgcgctgtcg ggttgattct ttgttattac agcgctaata tcgcgcgccc tatttcttgg
     1501 cttccagggc gtgggtagct gtcaattgga gttccactga atggcccgta ttgcaggcgt
     1561 caacattccg gataacaagc acactgttat ctcgctgacc tacatctacg gtgttggtcg
     1621 caccactgcg cagaaaatct gcgctaccac cggtgtcaac ccggcggtga agatcaaaga
     1681 tctctctgac gagcagatcg agcagctgcg tggcgaagtc gccaagctgg tcaccgaggg
     1741 tgacctgcgt cgcgaagtca acatgaaaat caagcgtctg atggacctgg gttgctatcg
     1801 cggcctgcgt catcgtcgtg gtctgccggt tcgcggtcag cgcaccaaga ccaacgcgcg
     1861 cacccgtaag ggcccgcgta agccgatccg caagtaattg cgcccgcgta tcgacaggaa
     1921 ttaagtcatg gctaagcctg ctgctcgtac tcgtaagaaa gtcaaaaaga cagtggtgga
     1981 tggcatcgcc catatccacg cttctttcaa caacaccatc gttaccatca ctgatcgtca
     2041 gggcaatgct ctgtcctggg cgacctccgg tggttccggt ttccgcggct cccgtaagag
     2101 caccccgttc gctgcccagg tggctgccga gcgtgccggt caggctgctc tggaatacgg
     2161 tctgaagaac ctcgacgtaa acgtcaaggg tccgggccca ggtcgcgaat ccgctgtgcg
     2221 tgctctgaac gcctgcggct acaaaatcgc cagcatcacc gacgtgacgc cgatcccgca
     2281 taacgggtgc cgtccgccga agaagcgtcg cgtgtaatag gagacagtga agaatggctc
     2341 gttacattgg tcccaagtgc aaactgtctc gccgtgaagg aaccgatctc ttcttgaaga
     2401 gtggtgcgcg cgcgctcgaa tccaagtgca acatcgaagc ggctcctggc cagcacggcg
     2461 ctcgccgtgg tcgtcagtcc gactacggta cccagctgcg tgagaagcag aaagtccgtc
     2521 gtatctacgg cgtgctggag cgtcagttca gcggttacta caaggaagct gcccgtcgca
     2581 agggcgctac cggcgagaac ctgctgcagc tgctggaatg ccgtctggac aacgtggttt
     2641 accgcatggg ctttggtgca acccgcgccg aatcccgcca gctggtatcg cacaaagcca
     2701 tcaccgtgaa cggttcgacc gtgaacgtcc cgtcctacca gatcaaagct ggtgacgtcg
     2761 tggccgttcg cgaaaaggcc aagaaccagc tgcgcgttgc ccaggctctc gacctgtgcg
     2821 cccagcgtgg tcgcgttgag tgggtcgaag tagatg
//
LOCUS       DATIHC010000853         2265 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17720, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000853 DATIHC010000000
VERSION     DATIHC010000853.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2265
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17720"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            39..1010
                     /gene="rlmF"
                     /locus_tag="VLF16_14300"
     CDS             39..1010
                     /gene="rlmF"
                     /locus_tag="VLF16_14300"
                     /EC_number="2.1.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007932141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008988 - rRNA
                     (adenine-N6-)-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(1618)-N(6))-methyltransferase
                     RlmF"
                     /protein_id="HSX72098.1"
                     /translation="MRQKTQPPRPPQAVAKGQLHPRNRHQGRYDFPKLIEASPELGRF
                     VILNPYGKQSIDFADPEAVKVFNRALMRQLYGIRHWDIPSGYLCPPVPGRADYLHGLA
                     DLLAESGDGVIPRGKAVRVLDVGTGANCIYPLLGHLDYGWRFLGSDIDPVALASAKAI
                     VQANGLQDAIELRHQAESGQIFQGLLQAGERFALTLCNPPFHASATEAASGSTRKWKN
                     LGKLDPKRKLPALNFGGQSNELWCEGGEAAFLRRMARESATVAGQVLWFSSLVSKAAN
                     LPALETALKQAGALEVRRVDMAQGNKQSRFVAWTFHEVAARRAWLQG"
     gene            1010..1600
                     /locus_tag="VLF16_14305"
     CDS             1010..1600
                     /locus_tag="VLF16_14305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016494889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HSX72099.1"
                     /translation="MAFTLATPCEYREEIRKSRFLALAAPVDSAEQALAFIERHRDPG
                     ASHNCWAFRCGDQYRFSDDGEPSGTAGRPILAAIEGQDCDRVVVLVIRWYGGIQLGTG
                     GLARAYGGGAAKCLQGGERIELVARVTARCHVPFAELARVKARLADWQAVLEEERFDA
                     QGAELRLALPAERLEQASRQLADIGRGQIALHGIPD"
     gene            complement(1648..>2265)
                     /locus_tag="VLF16_14310"
     CDS             complement(1648..>2265)
                     /locus_tag="VLF16_14310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72100.1"
                     /translation="VDVASAKLLKVFGAGTSEHAADLKEDGEYKPEATLLALREPDGI
                     SVTADGRYLVTADEGDTDPKASKTKGGLPTGGSRSVSVFDAQSGELVGDTGSQLDDMA
                     AQAGIYPDDRSPNKGSEPEGVVAFEAFGKPLVVAALERANGLALIDLSEPKQPKVVQV
                     LPAGEGAADGDLAPEGLAHVEHEGRHYLVTGLEKSGSVALFEVVE"
BASE COUNT          323 a          831 c          780 g          331 t
ORIGIN      
        1 gtgggacaat gcgcgccccg cccgccgaac cgcccgccat gcgtcagaaa acccagcctc
       61 cccgcccgcc ccaggccgtc gccaagggtc agttgcaccc gcgcaaccgc caccaggggc
      121 gctatgactt tcccaagctg atcgaggcca gcccggagct gggccgcttc gtcatcctca
      181 acccctacgg caagcagagc atcgacttcg ccgatcccga ggcggtgaag gtgttcaacc
      241 gcgcgctgat gcgccagctg tacggcatcc gccactggga catcccgtcg ggctacctgt
      301 gcccgccggt gcccggccgc gccgactacc tgcacggcct cgccgacctg ctggccgaga
      361 gcggcgacgg cgtgattccc cggggcaagg cagtgcgcgt actggacgtg ggtaccgggg
      421 ccaactgcat ctatccgctg ctcggccacc tcgactacgg ctggcgcttc ctcggctcgg
      481 acatcgaccc ggtggccctg gcctcggcca aggcgatcgt ccaggccaac ggcctgcagg
      541 acgccatcga gctgcgccac caggccgagt ccgggcagat cttccagggt ctgctgcagg
      601 ccggcgagcg cttcgccctg actctgtgca acccgccctt ccacgcctcc gcgaccgagg
      661 ccgccagcgg cagcacgcgc aagtggaaga acctcggcaa gctcgacccc aagcgcaagc
      721 tgccggccct gaacttcggc gggcagagca acgagctgtg gtgcgagggc ggcgaggcgg
      781 ccttcctgcg gcgcatggcg cgcgagagcg cgacggtggc cggccaggtg ctgtggttca
      841 gcagcctggt gtccaaggcc gccaacctgc cggccctgga gaccgcgctg aagcaggccg
      901 gggcgctgga ggtgcgccgc gtggacatgg cccagggcaa caagcagagc cgcttcgtcg
      961 cctggacctt ccacgaggtc gccgcgcggc gcgcctggct gcaaggctga tggccttcac
     1021 cctcgccacc ccctgcgagt atcgcgagga gattcgcaag agccgcttcc tcgccctggc
     1081 cgcgcccgtc gactcggccg agcaggcgct ggccttcatc gaacggcacc gcgacccggg
     1141 cgcctcgcac aactgctggg ccttccgctg cggcgaccag taccgcttca gcgacgacgg
     1201 cgaaccgagc ggcaccgccg gccggccgat cctcgccgcc atcgagggcc aggactgcga
     1261 ccgcgtggtg gtgctggtga ttcgctggta cggcggcatt cagctcggca ctggcggcct
     1321 ggcccgcgcc tatggtggcg gcgcggccaa gtgcctgcag ggcggcgagc ggatcgaact
     1381 ggtcgcgcgg gtgaccgccc gttgccatgt gcccttcgcc gagctggcgc gggtcaaggc
     1441 gcgcctggcg gattggcagg cggtgctgga ggaggagcgt ttcgacgccc agggcgccga
     1501 gctgcggttg gccctgccgg ccgagcggct ggagcaggcc agcaggcagc tggcggacat
     1561 cggtcgcggg cagatcgcgc tgcacggcat cccggactga aacgaaaaag ccgccccgaa
     1621 gggcggctct cgtacgaccc gcggcgctta ttcgaccact tcgaacagtg ccacgctgcc
     1681 gctcttctcc aggccggtga ccaggtagtg acgaccctcg tgctcgacat gggccaggcc
     1741 ttccggggcc aggtcaccat cggccgcgcc ctcgccggcc ggcagcacct gcaccacctt
     1801 gggctgcttc ggctcgctca ggtcgatcag cgccaggccg ttggcacgct ccagggcggc
     1861 gaccaccagc ggcttgccga aggcctcgaa ggccaccacg ccttccggct cgctgccctt
     1921 gttcgggctg cggtcgtccg ggtagatgcc ggcctgggcg gccatgtcgt ccagctggct
     1981 gccggtgtcg ccgaccagct cgccgctctg cgcatcgaat acgctgacgc tgcggctgcc
     2041 gccggtgggc aggccgccct tggtcttgga ggccttcgga tcggtgtcgc cctcgtcggc
     2101 ggtcaccagg tagcggccgt cggcggtaac gctgataccg tccggttcgc gcagcgccag
     2161 cagggtggcc tcgggcttgt actcgccatc ttccttcagg tcggcggcat gctcggaagt
     2221 acccgcgccg aacaccttga gcagcttggc ggacgccacg tcgac
//
LOCUS       DATIHC010000854         3584 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_38566, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000854 DATIHC010000000
VERSION     DATIHC010000854.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3584
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38566"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            154..2112
                     /gene="gspD"
                     /locus_tag="VLF16_14315"
     CDS             154..2112
                     /gene="gspD"
                     /locus_tag="VLF16_14315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003244430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system secretin GspD"
                     /protein_id="HSX72101.1"
                     /translation="MTDSKFLHKRLPLALLLAASCLGAPMPAAFAAEPAAATTQASAE
                     TWTINMKDADIRDFIDQVAEISGETFVVDPRVKGQVTVISKTPLGLEEVYQLFLSVMS
                     THGFSVLAQGDQARIVPITEARSGANSSHSAPDDVQTELIQVQHTSVNELIPLIRPLV
                     PQNGHLAAVAASNALIISDRRANIERIRQLIDELDARGGGDYNVINLQHAWVLDAAEA
                     LNASVMRNERKDGAGTRVIADARTNRLIILGPPAARQRLVNLARSLDIPSTRSANARV
                     IRLRHSDAKSLAETLGDISEGLKAPEGGGEAANSKPQNILIRADESLNALVLLAEPDT
                     VATLEEIVRNLDVPRAQVMVEAAIVEISGDISDALGVQWAVDARGSTGGLGGVNFGNT
                     GLSVGTVLRAIQNDEIPEDLTLPDGAIIGIGTDSFGALITALSSNSKSNLLSTPSLLT
                     LDNQQAEILVGQNVPFQTGSYTTDASGANNPFTTIEREDIGVTLKVTPHINDGATLRL
                     EVEQEISSIAPSAGVNSQAVDLVTNKRSIKSVILADDGQVIVLGGLIQDDVTSTDSKV
                     PLLGDIPFLGRLFRSTKDTHIKRNLMVFLRPTVVRDRAGMATLSGKKYSDISVLGADE
                     DGNSTLPGDAVRLFDKPGAAAIDLREAE"
     gene            complement(2175..3386)
                     /locus_tag="VLF16_14320"
     CDS             complement(2175..3386)
                     /locus_tag="VLF16_14320"
                     /EC_number="4.2.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA];
                     GO_process: GO:0071268 - homocysteine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-succinylhomoserine sulfhydrylase"
                     /protein_id="HSX72102.1"
                     /translation="MSQDWEAGRLDSDLEGVGFDTLAVRAGQHRTPEAEHGEAMFLTS
                     SYVFRSAADAAARFAGEVPGNVYSRYTNPTVRAFEERIAALEGAEQAVATASGMAAIL
                     AIVMSLCSSGDHVLVSRSVFGSTISLFEKYLKRFGIEVDYPPLADLDAWEAAFKPNTK
                     LLFVESPSNPLAELVDIAALAEIAHSRGALLAVDNCFCTPALQQPLKLGADIVMHSAT
                     KYIDGQGRGLGGVVAGRRAQMELLVGFLRTAGPTLSPFNAWMFLKGLETLRVRMQAQS
                     ASALELAQWLETQPGIDKVYYAGLPSHPQHELARRQQSAFGAVVSFEVAGGKEAAWRF
                     IDATRVISITTNLGDTKTTIAHPATTSHGRLSPQERANAGIRDSLVRVAVGLEDIADL
                     KADLARGLAAL"
     gene            complement(3401..>3584)
                     /locus_tag="VLF16_14325"
     CDS             complement(3401..>3584)
                     /locus_tag="VLF16_14325"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007158654.1"
                     /note="Catalyzes first step of the de novo purine
                     nucleotide biosynthetic pathway; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HSX72103.1"
                     /translation="KEAVGGGKIKIEHFDCAVFDGQYVTGDVSEHYLNKIEQARNDAA
                     KAGSPMVSAIIDLHND"
BASE COUNT          643 a         1254 c         1154 g          533 t
ORIGIN      
        1 gttcgacatg caggagccca ccgccgagca actggaacaa ctgcaggacg aagacgtgca
       61 ggccctgcag gagcgcatcc agatcctcca acaacgcatg gaaggcgaag gcgacctgcc
      121 gccgcccgac gagccggaag ccgaagaaag cccatgaccg attccaagtt cctgcacaaa
      181 cgcctgcccc tggccctctt gctggccgcg agctgcctgg gcgcaccaat gcccgccgcc
      241 ttcgccgccg agcccgcagc ggcgaccacc caggcctccg ccgagacctg gaccatcaac
      301 atgaaggacg ccgatatccg cgacttcatc gaccaggtgg cggaaatttc cggcgagacc
      361 ttcgtggtcg atccacgggt caagggtcag gtcacggtga tctccaagac cccgctcggc
      421 ctggaagagg tctaccagct gttcctctcg gtgatgagca cacacggctt cagtgtgctg
      481 gcacagggcg accaggcgcg catcgtgccg atcaccgagg cccgcagcgg cgccaacagc
      541 agccactcgg cgccggacga cgtccagacg gagctgatcc aggtgcagca cacctcggtc
      601 aacgagctga ttccgctgat ccgcccgctg gtgccgcaga acggccacct ggccgccgtg
      661 gcggcctcca acgccctgat catcagcgac cgccgcgcca acatcgagcg catccgccag
      721 ctgatcgacg aactcgatgc ccgcggcggc ggcgactaca acgtgatcaa cctgcagcac
      781 gcctgggtgc tggacgcggc cgaagcgctg aacgcctcgg tgatgcgcaa cgagcgcaag
      841 gacggtgccg gcacccgggt gatcgccgat gcccgcacca accgcctgat catcctcggc
      901 ccgccggcgg cgcgtcagcg cctggtcaac ctggcccgct cgctggacat ccccagcacc
      961 cgctcggcca atgcccgggt gatccgcctg cgccacagcg atgccaagag cctggcggag
     1021 accctcggcg acatctccga gggcctgaag gcgccggaag gcggcggcga ggcggccaac
     1081 agcaagccgc agaacatcct gatccgcgcc gacgagagcc tcaatgccct ggtcctgctg
     1141 gccgaaccgg acaccgtggc gaccctcgag gaaatcgtgc gcaacctgga cgtgccacgc
     1201 gcccaggtga tggtcgaggc ggccatcgtc gagatctccg gcgacatcag cgacgccctc
     1261 ggcgtgcagt gggcggtgga cgcgcgcggc agcaccggcg gcctgggcgg cgtcaacttc
     1321 ggcaacaccg gtctttccgt ggggaccgtg ctgcgcgcca ttcagaacga cgagattccc
     1381 gaagacctga ccctgccgga cggcgccatc atcggcatcg gcaccgacag cttcggcgcg
     1441 ctgatcaccg ccctctcctc caacagcaag agcaacctgc tgtcgacgcc gagcctgctg
     1501 accctggaca accagcaggc ggaaatcctg gtgggccaga acgtgccgtt ccagaccggc
     1561 tcctacacca ccgacgcctc gggggcgaac aacccgttca ccaccatcga gcgtgaggat
     1621 atcggcgtga ccctcaaggt caccccgcac atcaacgatg gcgccaccct gcgcctggag
     1681 gtggagcagg agatttcctc catcgccccg agcgccggcg tcaactccca ggcggtggac
     1741 ctggtgacca acaagcgctc gatcaagagc gtgatcctcg ccgacgacgg ccaggtgatc
     1801 gtgctgggtg gtttgattca ggacgacgtc accagcaccg actccaaggt gccgctgctg
     1861 ggcgacatcc ccttcctcgg ccgcctgttc cgctcgacca aggacaccca catcaagcgc
     1921 aacctgatgg tgttcctgcg cccgaccgtg gtgcgcgacc gcgccggcat ggccaccctc
     1981 tccggcaaga agtacagcga catcagcgtg ctgggcgcgg acgaggacgg caacagcacc
     2041 ctgccaggcg atgccgtgcg gctgttcgac aagcccggcg ccgccgccat cgacctgcgc
     2101 gaagcggaat aaaaaggacg cccatgaaaa acgccgctcg atgagcggcg tttttcattg
     2161 cggacccgga tctctcagag tgcggcgagg ccgcgggcca ggtcggcctt gaggtcggcg
     2221 atgtcttcca gtcccaccgc gacgcggacc aggctgtcac ggatgccggc attggcccgc
     2281 tcctgcggcg acagccgacc gtgggaggtg gttgccgggt gggcaatggt ggtcttggtg
     2341 tcgccgaggt tggtggtgat ggagatcacc cgggtcgcgt cgatgaagcg ccaggccgcc
     2401 tccttgccgc ccgcgacctc gaagctgacc accgcgccga aggcgctctg ctgacgacgg
     2461 gccagctcgt gctgtgggtg gctcggcagg ccggcgtagt agaccttgtc gatgcccggc
     2521 tgggtctcca gccactgggc cagctcgaga gcgctggcgc tctgcgcctg catgcgcaca
     2581 cgaagggtct ccaggccctt gaggaacatc caggcattga acgggctgag ggtcgggccg
     2641 gcggtacgca ggaagccgac cagcagctcc atctgcgcgc ggcgcccggc gaccacacct
     2701 cccaggccac gaccctgacc atcgatgtac ttggtggccg aatgcatgac gatgtcggca
     2761 ccgagcttga gcggctgttg cagggccggc gtgcagaagc agttgtccac ggccagcaac
     2821 gcgccgcggc tgtgggcgat ctcggccagc gccgcgatgt cgaccagttc ggccagcggg
     2881 ttggacggcg actcgacgaa cagcagcttg gtgttgggct tgaaggccgc ttcccaggcg
     2941 tcgaggtcgg ccagcggcgg ataatcgact tcaatgccga agcgcttcag atacttctcg
     3001 aacaggctga tggtcgagcc gaacacgctg cgcgacacca gcacgtgatc acccgagctg
     3061 cacagactca tgacgatcgc caggatcgca gccatgccgg aagcggtggc caccgcctgc
     3121 tcggcgccct ccagagcggc gatgcgctcc tcgaaggcac gtacggtggg gttggtgtaa
     3181 cgcgagtaga cgttgcccgg cacctcgccg gcgaagcgcg cggcggcatc ggcggcgctg
     3241 cggaacacat agctggaggt gaggaacatg gcttcgccat gctccgcctc aggcgtgcgg
     3301 tgctggccgg cgcgcaccgc cagggtgtcg aagccgacgc cttcgaggtc gctgtccagc
     3361 cgtcccgcct cccaatcctg gctcatgtct gctcccggtc tcagtcgttg tgcagatcga
     3421 taatggcgct gaccatcggg ctgcccgcct tggccgcatc gttacgcgcc tgctcgatct
     3481 tgttcagata gtgctcgctg acgtcaccgg tgacgtactg cccgtcgaac accgcgcagt
     3541 cgaaatgctc gatcttgatc ttgccgccgc ccacggcctc cttc
//
LOCUS       DATIHC010000855         1600 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_45615, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000855 DATIHC010000000
VERSION     DATIHC010000855.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1600)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1600
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45615"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..486)
                     /locus_tag="VLF16_14330"
     CDS             complement(<1..486)
                     /locus_tag="VLF16_14330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSX72104.1"
                     /translation="MELKDKVIIITGGCQGLGRAMGEYLAAKGAKLALVDLNQEKLDD
                     AVAACKAAGGDARAYLCNVANEEQVTHMVAQVAEDFGAINGLVNNAGILRDGLTIKVK
                     DGEMTKMSLAQWQSVIDVNLTGVFLCTREVAAKMIELKNQGAIVNISSISRAGNMGEA
                     NY"
     gene            589..1308
                     /locus_tag="VLF16_14335"
     CDS             589..1308
                     /locus_tag="VLF16_14335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family protein"
                     /protein_id="HSX72105.1"
                     /translation="MSMTAEKNARELLLKEYRGVLSTHSKSMPGFPFGSVVPYCLDDQ
                     GRPLILISRIAQHTHNLQKDAKCSLLVGERGAEDVQAAGRLTLLAEARQLGEAAAIEA
                     AAERYYRYFPDSRDYHSAHDFDFWVLEPVRWRFIGGFGAIHWLSDVGLANPHAGDAER
                     GMVEHMNDDHAAAIARYVQLAGLPDHEPARMAGIDAEGFHLRIGKALYWLAFPISCNN
                     PGAVRQALVQLARAEVWPTVG"
     gene            1384..>1600
                     /locus_tag="VLF16_14340"
     CDS             1384..>1600
                     /locus_tag="VLF16_14340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HSX72106.1"
                     /translation="MRAFLFLFLLFPVIELAVLIQVGSAIGVLPTLLLVIGTAVLGSV
                     LLRVAGVATAWRARERLARGEMPEQEMF"
BASE COUNT          242 a          530 c          515 g          313 t
ORIGIN      
        1 gtagttggcc tcgcccatgt tgccggcgcg ggagatggag gagatgttga cgatggcgcc
       61 ctggttcttc agctcgatca tcttggcggc gacttcgcgg gtgcagagga acacgccggt
      121 caggttgacg tcgatcaccg actgccactg ggccaggctc atcttggtca tctcgccgtc
      181 cttgaccttg atggtcaggc catcgcgcag gatgccggcg ttgttgacca ggccgttgat
      241 ggcgccgaaa tcctcggcca cctgggcgac catgtgggtc acctgctctt cgttggccac
      301 gttgcacagg taggcgcggg cgtcgccacc ggcggccttg caggcggcta cggcgtcatc
      361 cagcttctcc tggttcaggt cgaccagcgc cagcttggcg cccttggccg ccaggtactc
      421 gcccatggcg cggcccaggc cctggcagcc gccggtgatg atgatgactt tgtctttgag
      481 ttccataaca ctactcctcg aaggtctggc aggtggcctc gctggcgccc ggttaattcg
      541 gcgcctgtcc gtttggtttt cgacgaattc ttagcgagga gtcataaatt gagcatgacg
      601 gcggaaaaga atgcccgaga attgctgctc aaggaatacc gcggggtgct ttccacccac
      661 tccaagagca tgccgggctt tcctttcgga tcggtggtgc cttactgcct ggacgaccag
      721 ggccggccgc tgatcctcat cagccgcatc gcccaacaca cccacaacct gcagaaggac
      781 gccaagtgct cgctgctggt cggcgagcgc ggcgccgaag acgtgcaggc cgcggggcgc
      841 ctgaccctgc tggccgaagc ccggcaattg ggcgaggcgg ccgccatcga ggccgcggcc
      901 gagcgctact accgctattt ccccgattcg cgcgactacc acagcgccca cgacttcgac
      961 ttctgggtgc tcgagcccgt gcgctggcgc ttcatcggcg gcttcggcgc catccactgg
     1021 ctgagtgacg tcggcctggc caacccccat gccggcgacg ccgagcgcgg catggtcgag
     1081 cacatgaacg acgatcatgc cgcggcgatt gcccgctacg tgcagctggc cggcctgccg
     1141 gatcacgagc cggcgcggat ggccggcatc gacgccgaag gctttcacct gcgtatcggc
     1201 aaggccctgt actggctggc ctttccaata tcctgtaaca accccggcgc cgtgcgccag
     1261 gccctggtac agctggctcg cgccgaggtt tggccgaccg tcgggtaggc gtcagcttga
     1321 attaagcggc cggccccata cttcctacct accggaagcc gttcttcctc aaggacccta
     1381 gcaatgcgcg cgtttctttt tctgttcctg ctgttccccg tcatcgagct ggctgtgctg
     1441 atccaggtcg gcagcgctat cggcgtgctg ccgacgctgc tgctggtgat cggcaccgcg
     1501 gtgctcggca gcgtcctgct gcgtgtggcc ggcgtggcca ccgcctggcg cgcccgcgaa
     1561 aggctggccc gtggcgagat gcccgagcag gagatgttcg
//
LOCUS       DATIHC010000856         2959 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_22309, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000856 DATIHC010000000
VERSION     DATIHC010000856.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2959
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22309"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            89..526
                     /locus_tag="VLF16_14345"
     CDS             89..526
                     /locus_tag="VLF16_14345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase"
                     /protein_id="HSX72107.1"
                     /translation="MRHFLSVLPLVLLAGCSSFRPDAEHITPVPGDRVLAYQEDQQNG
                     GRLVVNRDMGLMGGGCYVAIEVDRKLAARIGMAEVVSFNVPAGTRVLGLTIDPLDDTL
                     CGMGRLHKEVAVKVAPGSTQYFHIVSENRGGFDIRPDDKPPQP"
     gene            529..834
                     /locus_tag="VLF16_14350"
     CDS             529..834
                     /locus_tag="VLF16_14350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72108.1"
                     /translation="MTHPARGAACAALLLIGLPALAAQWPAGGRDTFRNGCEDSAGQA
                     LGQERAQRYCACTLTRIDRDFSATEIAALDKAELPEPLVARLQRVSQTCLDELGGQG"
     gene            complement(836..1750)
                     /locus_tag="VLF16_14355"
     CDS             complement(836..1750)
                     /locus_tag="VLF16_14355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016970263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX72109.1"
                     /translation="MAFDRLQAMRAFCRIVELGSFTRAADALGLAKTTVSGQVLALET
                     QLGVKLLHRTTRRVTPTSEGNAYYERARVVLDDIDELETSVSQSRGAARGRVKVEMPS
                     PLGRFLIIPSLPDFVARHPLIHLDLGCSERVVDLVQEGVDCAIRGGEVSTPDLVCKPI
                     GKMRFVLCATPQYLAQHPPLQHPRDLAALHFLAFVFPASGRQKVNVLHRGEERFVIEQ
                     EPTMRFNSGGAYIAAAEAGLGFVGIPRAEAEQPLAEGRLVEMLPQWQLESMPMSLVYP
                     YSRRLSARVRAFADWATEVMGNDPLWRP"
     gene            1867..2310
                     /locus_tag="VLF16_14360"
     CDS             1867..2310
                     /locus_tag="VLF16_14360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016970277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HSX72110.1"
                     /translation="MTSKRNHYHQTAPDVFKAMYALEQTQAAFPLENSLRELIKVRAS
                     QLNGCALCLDMHSADALKQGESARRLLALGAWEDAPFFTERERAALLWTDTLTLLPQR
                     HASDAVYAQVAAQFGEREIAELTLAIVTINAWNRFGVGFAMQPAQ"
     gene            2343..2714
                     /locus_tag="VLF16_14365"
     CDS             2343..2714
                     /locus_tag="VLF16_14365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003450515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HSX72111.1"
                     /translation="MSALVSAAALGHGGEETVTPIAAAQLPTQAGSHAQALRVEFAPG
                     QTSVPHRHPGPVFVVVVSGEVESALDDQPPQRFKAGEAWYEAPGQVHRVTRNPSAREP
                     AVLVAWLLSDGDTPLVTPVSP"
     gene            2733..2945
                     /locus_tag="VLF16_14370"
     CDS             2733..2945
                     /locus_tag="VLF16_14370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72112.1"
                     /translation="MFRAVLIETLDLDEPALRRRIAALAASLDWRLEPLEQRWRLWLD
                     DSQAERVCGALLGCGWLRRLEFAEPA"
BASE COUNT          435 a         1009 c         1054 g          461 t
ORIGIN      
        1 gcgaggttca gggatttttc ggggcttgag ccgcaggcgt ctagcgccaa tactgggccg
       61 accccacgca cgcccaagga gggcatacat gcgccacttc ctctccgttc ttcccctggt
      121 tctgctggcc ggctgttcgt cgttccgccc cgatgccgag cacatcaccc cggtgcctgg
      181 tgaccgggtg ctggcctatc aggaggatca acagaacggc ggccgcctgg tggtgaaccg
      241 cgacatgggc ctgatgggcg gcggctgcta cgtggccatc gaggtcgacc gcaagctggc
      301 tgcgcgcatc ggcatggccg aggtggtcag cttcaacgtc ccggccggca ctcgcgtgct
      361 gggcctgacc atcgacccgc tggacgacac cctttgcggc atgggccgcc tgcacaagga
      421 ggtggcggtg aaggtggcgc cgggcagcac ccagtacttc cacatcgtca gcgagaaccg
      481 tggcggcttc gatatccgcc cggacgacaa gccgccgcag ccctgatcgt gacgcacccg
      541 gcccggggcg cggcctgcgc cgcactactg ctgatcggcc tgccggcact cgccgcgcag
      601 tggcctgcgg gcgggcgcga tacttttcgc aacggctgcg aggacagcgc tggccaggcc
      661 ctgggccagg agcgggcgca acgctactgc gcctgcacgc tgacgcgcat cgaccgcgac
      721 ttctccgcga ccgagatcgc cgcgctggac aaggccgaac tgccggagcc gctggtggcg
      781 cgcctgcagc gggtgtccca gacgtgcctg gacgagctgg gcgggcaggg ctaggtcagg
      841 gccgccacag cgggtcgttg cccatcacct cggtggccca gtcggcgaat gcccgcaccc
      901 gcgcggagag gcgccgcgag taggggtaga ccaggctcat cggcatgctc tccagttgcc
      961 actgcggcaa catttccacc agccggccct cggccagcgg ctgctccgct tcggcgcggg
     1021 gtatgccgac gaatcccagc ccggcctcgg ccgccgcgat gtaggcaccg ccgctgttga
     1081 agcgcatggt cggctcctgc tcgatgacga accgttcttc gccgcggtgc aacacgttga
     1141 ccttctgccg gccgctggcc gggaacacga acgcgagaaa gtgcagtgcg gcgaggtcgc
     1201 gcgggtgctg cagcggcgga tgctgcgcca ggtactgagg tgtggcgcag aggacgaaac
     1261 gcatcttgcc gatgggcttg cacaccaggt ccggcgtgct cacctcgccg ccgcggatgg
     1321 cgcagtccac gccttcctgc accaggtcga cgacgcgttc gctgcagccc aggtcgagat
     1381 ggatcagcgg atggcgcgcg acgaagtcgg gcagcgaggg aatgatcagg aagcggccga
     1441 ggggcgaggg catctccacc ttgacccggc cgcgggccgc gccgcggctc tgcgagacgc
     1501 tggtttccag ttcgtcgatg tcgtccagca ccacgcgggc gcgctcgtag taggcgttgc
     1561 cctccgaggt gggcgtcacg cggcgggtgg tgcggtgcag cagcttgacg ccgagctggg
     1621 tttccagtgc cagcacctgg ccggacacgg tggtcttggc caggccgagg gcgtcggcgg
     1681 cgcgggtgaa gctgccgagt tcgacgatgc ggcaaaacgc gcgcatcgct tgcaggcgat
     1741 cgaaggccat tgtccgtttc tccgcacaat gtttacgggc gcggccaatt tatcccgtaa
     1801 cggccgggca atacagtggc gaccattccc ggtacggcac cgggctcttt cggagagatc
     1861 gccatgatga ccagcaagcg caaccactat caccagaccg cgcccgacgt gttcaaggcc
     1921 atgtacgccc tcgagcagac ccaggcggcg tttccgctgg agaactcgct gcgcgagctg
     1981 atcaaggtgc gtgcctcgca gctcaacggc tgcgccctgt gcctggacat gcacagcgcc
     2041 gacgcgctga agcagggcga gtcggcccgt cgcctgctgg ccctgggcgc ctgggaagac
     2101 gcgccgttct tcaccgagcg cgaacgcgcc gcgctgctgt ggaccgacac cctgaccctg
     2161 ttgccgcagc gccacgcctc ggatgccgtg tacgcgcagg tggccgccca gttcggcgag
     2221 cgcgagatcg ccgagctgac cctggccatc gtcaccatca acgcgtggaa ccgcttcggt
     2281 gtcggtttcg ccatgcagcc agcgcagtga tcgccatgcg caggccgatt gcgatattcg
     2341 ccatgtccgc ccttgtcagc gccgccgcgc tgggccatgg cggcgaggaa acggtgacac
     2401 cgattgccgc cgcgcagctg ccgacgcagg cgggcagcca tgcccaggcg ctgcgggtgg
     2461 aattcgcacc cgggcagacg tcggtgccgc accggcatcc gggcccggtg ttcgtggtgg
     2521 tggtcagcgg cgaggtggag tcggcgctgg acgatcagcc gccgcagcgc ttcaaggccg
     2581 gcgaggcctg gtacgaggcg ccgggccagg ttcaccgcgt cacccgcaat cccagcgcgc
     2641 gcgagccggc cgtgctggtg gcctggctgc tgtccgacgg cgacacgccg ctggtcacgc
     2701 ccgtttcccc ttgatccccg taggaggtcg ccatgttccg cgccgtgctg atcgagaccc
     2761 tggacctgga cgagccggcc ctgcgccggc gaatcgccgc gctggcggcg tcgctcgact
     2821 ggcggctgga gccgctggag cagcgctggc gattgtggct ggacgattcc caggccgagc
     2881 gcgtgtgcgg cgcgctgctg ggttgcggct ggctgcgccg gctggagttc gccgagccgg
     2941 cgtagcgcag tcgtggtgg
//
LOCUS       DATIHC010000857         3016 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27143, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000857 DATIHC010000000
VERSION     DATIHC010000857.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3016
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27143"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..206
                     /locus_tag="VLF16_14375"
     CDS             <1..206
                     /locus_tag="VLF16_14375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012018470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MerR family DNA-binding protein"
                     /protein_id="HSX72113.1"
                     /translation="FSLAECKELIDLYDPSSGNRKQLETFMAKIAARRAQLEQQLLDI
                     EQMQLELDTAEERCLAALAETAM"
     gene            281..1444
                     /locus_tag="VLF16_14380"
     CDS             281..1444
                     /locus_tag="VLF16_14380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isovaleryl-CoA dehydrogenase"
                     /protein_id="HSX72114.1"
                     /translation="MNFPTLNFGLGETIDMLRDSVHQFAQAELAPRAAQIDRDNEFPM
                     DMWRKFGDMGLLGMTVEEEYGGTNMGYLAHVIAMEEISRASASVGLSYGAHSNLCLNQ
                     IRKNGTHEQKAKYLPKLCSGEHIGALAMSEPNAGSDVVSMKLRAEKRGDRYVLNGNKM
                     WITNGPDAHTYVIYAKTDINAGSRGMTAFIVERDYKGFSRHQKLDKLGMRGSNTCELV
                     FEDVEVPEENILGGEGRGVAVLMSGLDYERTVLSGGPTGIMSACMDVVLPYVHERQQF
                     KQSIGEFQLVQGKLADMYAGMNASKSYLYTVAKACDRGEESRKDAAAVILYTAEMATK
                     MALDTIQLLGGNGYTNEYPAGRLLRDAKLYEIGAGTSEIRRMLIGRELYNETK"
     gene            1525..>3016
                     /locus_tag="VLF16_14385"
     CDS             1525..>3016
                     /locus_tag="VLF16_14385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HSX72115.1"
                     /translation="MAILHTQINTRSPEFAANQAAMLTQVNDLRALLARVHEGGGAKA
                     QERHTSRGKLLPRERINRLLDIGSPFLEVGQLAAHEVYGEDVPAAGVVAGIGRVEGVE
                     CMIIANDATVKGGSYYPLTVKKHLRAQTIAQQNRLPCIYLVDSGGANLPRQEEVFPDR
                     EHFGRIFFNQANMSAQGIPQIAVVMGSCTAGGAYVPAMSDETIMVRNQATIFLAGPPL
                     VKAATGEVVTAEELGGADVHCKTSGVADHYADDDEHALAIARRCIANLNWRKLGQLQA
                     RAPLAPLHGAEELYGVIPADAKQPFDVREVISRVVDGSEFDEFKALFGTTLVCGFAHV
                     HGYPVAILANNGILFAEAAQKGAHFIELACQRGIPLLFLQNITGFMVGKKYEEGGIAK
                     HGAKLVTAVACAKVPKFTVIIGGSFGAGNYGMCGRAYDPRFLWMWPNARIGVMGAEQA
                     AGVLVQVKREQAARAGQPFSDEEETRIKQPIVAQYEQQAHAYYSSAR"
BASE COUNT          590 a         1059 c          936 g          431 t
ORIGIN      
        1 gcttctccct cgccgagtgc aaggagctga tcgacctcta cgaccccagc agcggcaacc
       61 gcaagcagct ggagaccttc atggccaaga tcgccgcccg ccgcgcccag ctggagcagc
      121 aactgctgga catcgaacag atgcagctgg aactcgacac cgccgaagag cgctgcctgg
      181 cagccctggc agagactgcc atgtagggtg cgccgtgcgc accaccctaa ccgatccggt
      241 gcgcacggcg caccctacga caataacagc aggtgcctcc atgaacttcc cgaccctcaa
      301 cttcggtctc ggcgagacca tcgacatgct gcgcgactcg gtccaccagt tcgcccaggc
      361 cgagctggcc ccgcgtgcgg cgcagatcga ccgcgacaac gagttcccca tggacatgtg
      421 gcgcaagttc ggcgacatgg gcctgctcgg catgaccgtg gaagaagagt acggcggcac
      481 caacatgggc tacctggccc acgtgatcgc catggaagag atcagccgcg cctcggcctc
      541 ggtcggcctg tcctacggtg cgcactccaa cctgtgcctg aaccagatcc gcaagaacgg
      601 cacccacgag cagaaggcca agtacctgcc caagctgtgc tcaggcgagc acatcggcgc
      661 cctggccatg agcgagccca acgccggctc cgacgtggtg tcgatgaagc tgcgcgccga
      721 gaagcgcggc gaccgctacg tgctcaacgg caacaagatg tggatcacca acgggcctga
      781 cgcccacacc tacgtgatct acgccaagac cgacatcaac gccggctcgc gcggcatgac
      841 cgcgttcatc gtcgagcgcg actacaaggg tttctcccgc caccagaagc tggacaagct
      901 gggcatgcgc ggctccaaca cctgcgaact ggtgttcgag gacgtggaag tgccggaaga
      961 gaacatcctc ggcggcgaag gccgtggcgt agccgtgctg atgagcggcc tggactacga
     1021 gcgtaccgtg ctctccggcg gcccgaccgg gatcatgagc gcctgcatgg acgtggtgct
     1081 gccctacgtg cacgagcgcc agcagttcaa gcagtcgatc ggcgagtttc agttggtgca
     1141 aggcaagctg gccgacatgt acgccggcat gaacgcctcc aagtcctacc tgtacaccgt
     1201 ggccaaggcc tgcgaccgcg gcgaggaatc gcgcaaggac gccgccgcgg tgatcctcta
     1261 caccgccgag atggccacca agatggcact cgacaccatc cagctgctcg gcggcaacgg
     1321 ctacaccaac gagtacccgg ccggccgcct gctgcgtgac gccaagctct acgagatcgg
     1381 cgccggcacc agcgagatcc gccgcatgct gatcggccgc gagctgtaca acgagaccaa
     1441 gtaacacgcg ggcaaccgta gggtgcgcca tgcgcaccag gaacatccca tggtgcgcat
     1501 ggcgcaccct acaggaagca acatatggcc atcctgcata cccagatcaa tacccgctcg
     1561 ccggagttcg ccgccaacca ggcggccatg ctcacccagg tgaacgacct gcgtgcgctg
     1621 ctcgcccgcg tccacgaagg cggcggcgcc aaagcccagg aacgccacac ctcgcgcggc
     1681 aagctgctgc cacgtgaacg catcaatcgc ctgctggaca tcggctcgcc cttcctcgag
     1741 gtcggtcagc tggccgccca cgaggtgtac ggcgaggacg tgccggccgc cggcgtggtc
     1801 gccggcatcg ggcgggtgga aggcgtcgag tgcatgatca tcgccaacga cgccacggta
     1861 aaaggcggca gctactaccc gctgaccgtg aagaagcacc tccgcgcaca aaccatcgcc
     1921 cagcagaacc gcctgccgtg catctatctg gtggactccg gcggcgccaa cctgccgcgc
     1981 caggaagaag tgttcccgga tcgcgagcac ttcggccgga tcttcttcaa ccaggccaac
     2041 atgagcgccc agggcatccc gcagatcgcc gttgtgatgg gctcctgcac cgccggcggc
     2101 gcctatgtgc cggcgatgag cgacgagacc atcatggtgc gcaaccaggc caccatcttc
     2161 ctggccggcc cgcccctggt gaaggccgcc accggcgagg tggtgactgc cgaggagctg
     2221 ggcggcgccg acgtgcactg caagacctcc ggcgtagccg accattacgc cgatgatgac
     2281 gagcacgccc tggccatcgc ccgccgctgc atcgccaacc tcaactggcg caagctcggc
     2341 cagttgcagg cccgcgctcc gctcgccccg ctgcatggtg ccgaggagct gtacggggtg
     2401 atcccggccg acgccaagca gcccttcgat gtacgcgagg tgatttcccg cgtggtcgac
     2461 ggcagcgagt tcgatgaatt caaggcgctg ttcggcacca ccctggtctg cggcttcgcc
     2521 catgtccacg gctacccggt ggcgatcctg gcgaacaacg gcatcctctt cgccgaggcc
     2581 gcgcagaaag gcgcgcactt catcgaactg gcctgccagc gcggcatccc gctgctgttc
     2641 ctgcagaaca tcaccggctt catggtcggc aaaaagtatg aagagggcgg catcgccaag
     2701 cacggcgcca agctggtgac cgccgtggcc tgcgccaagg tgccgaagtt caccgtgatc
     2761 atcggcggca gcttcggcgc tggtaactac ggcatgtgcg gccgtgccta cgacccacgc
     2821 ttcctgtgga tgtggcccaa cgcgcgcatc ggcgtgatgg gtgccgaaca ggctgccggc
     2881 gtactggtac aggtcaagcg cgagcaggcg gcccgcgccg gccagccgtt cagcgacgag
     2941 gaagagacgc gcatcaagca gcccatcgtc gcccagtacg agcagcaggc ccacgcctac
     3001 tactccagcg cccgcc
//
LOCUS       DATIHC010000858         1912 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_1543, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000858 DATIHC010000000
VERSION     DATIHC010000858.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1912)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1912)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1912
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1543"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..732
                     /locus_tag="VLF16_14390"
     CDS             <1..732
                     /locus_tag="VLF16_14390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72116.1"
                     /translation="ALAGAPSGGWAHLLVRRIDPARSERDPSGAWRGLGEGPAIELRV
                     NDQAALFGYGVGKDALGDYYQLAVKPRRLQGMPVLQIGSKDVVVVHKPGRKPFAHISR
                     QRYLEGLIAGEHAHIALLQKQLAEATDAESRHQLEQFIRQWQGSVAQKQASLNGMSEA
                     ERRSPTCQSSGSRGLFAACGDPGAVYYVTFAPDYFQPGLPPSSVQLLTISVVNKGFLN
                     DRVLGLKLREAVAQLDLPALQRSLD"
     gene            807..1244
                     /locus_tag="VLF16_14395"
     CDS             807..1244
                     /locus_tag="VLF16_14395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015268557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HSX72117.1"
                     /translation="MKTVAELLRTKPSAYVHHIAPEASVLEAVKQLAEKKIGALLVLS
                     GGRLAGIVSERDYVCKLAELESAAFDAKVADIMTADVITVSPRDSVQHCLQLMTDRRL
                     RHLPVVAEGELIGMLSIGDLVKQTIDDQASLIQQLEQYIRGEQ"
     gene            1411..>1912
                     /locus_tag="VLF16_14400"
     CDS             1411..>1912
                     /locus_tag="VLF16_14400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019580697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane CreD family protein"
                     /protein_id="HSX72118.1"
                     /translation="MNRNLLIKLGAIAALILLLMIPIIMIDGMIDERQSLRDDVLQDI
                     ARSSSHSQKITGPLLVVPYRKTLRTWKTHDKTGERYLEESEVGGRIYLLPERLAIGGE
                     IGTELRARGIYQARLFHSNSRLAGHFEVPANFGVTEDVGDYRFGEPFVSVGISDIRGI
                     KNNLVLE"
BASE COUNT          338 a          664 c          640 g          270 t
ORIGIN      
        1 gcgctggccg gcgccccgtc cggtggctgg gcgcacctgc tggtgcggcg catcgacccg
       61 gcgcgcagcg agcgcgaccc gagcggcgcc tggcgtggtc tcggcgaagg cccggccatc
      121 gaactgcggg tcaacgacca ggccgcgctg ttcggctacg gcgtcggcaa ggacgccctg
      181 ggcgactact accagctggc ggtcaagccg cggcgcctgc agggcatgcc ggtgctgcag
      241 atcggcagca aggacgtggt ggtggtgcac aagcccggcc gcaagccgtt cgcccatatc
      301 agccggcagc gctatctgga agggctcatc gccggcgagc acgcacacat cgcgctgctg
      361 cagaagcagc tggccgaggc cacggatgcc gagagccgcc accagctgga gcagttcatc
      421 cgccagtggc agggcagcgt ggcgcagaag caggcgtcgc tgaatgggat gagcgaggcc
      481 gagcggcgtt cgccgacctg ccagagcagc ggttcgcgcg ggctgttcgc cgcctgcggc
      541 gatcccggcg cggtgtacta cgtgaccttt gcccccgact acttccagcc cggtctgccg
      601 ccgagcagcg tgcagctgct gaccatcagc gtggtcaaca agggctttct caacgaccgc
      661 gtgctgggcc tgaagctgcg cgaggcggtg gcgcagctcg atctgccggc cttgcaacgg
      721 agcctcgact gagctgggct attcttccct ggccgggcaa ggattctgcc cggcgcagaa
      781 caacagacag cccggggagg cgttgcatga agaccgttgc ggaactgctc agaaccaagc
      841 ccagtgccta tgtgcaccac atcgcccccg aggcctcggt gctcgaggcg gtcaagcagc
      901 tggccgagaa gaagatcggt gcgctgctgg tgctgagcgg cgggcgccta gcggggatcg
      961 tcagcgagcg tgactacgtg tgcaagctgg ccgagctgga gagcgcggcg ttcgacgcca
     1021 aggtcgccga catcatgacc gccgacgtga tcaccgtcag cccgcgcgac agcgtgcagc
     1081 actgcctgca actgatgacc gaccgccgcc tgcgccacct gccggtggtg gccgagggcg
     1141 agctgatcgg catgctgtcg atcggcgacc tggtcaagca gaccatcgac gaccaggcca
     1201 gcctcatcca gcagctggag cagtacatcc gcggcgagca gtagcggccg ccgtgtcttc
     1261 ccctctcccg ctgggagagg gtgatccggc gcggggccat cgcgcctcgg tcgccacaca
     1321 aattccacac agcctccaca caccgcgcac ggtgccgcca cgggcgccgt cgagactctc
     1381 cccacggtcc aaccaaggag agtcacccat atgaaccgca acctgctgat caagctcggc
     1441 gccatcgccg cgctgatcct gctgctgatg atcccgatca tcatgatcga cggcatgatc
     1501 gacgagcgtc agagcctgcg tgacgacgtg ctgcaagaca tcgcccgcag ctccagccac
     1561 agccagaaga tcaccggccc gctgctggtg gtgccctacc gcaagaccct gcgcacctgg
     1621 aagacccacg acaagaccgg cgagcgctac ctggaagaga gcgaagtggg cgggcgcatc
     1681 tacctcctgc cggagcgcct ggccatcggc ggcgagatcg gcaccgagct gcgcgcccgc
     1741 ggcatctacc aggcgcgcct gttccacagc aacagccgcc tcgccggcca cttcgaggtg
     1801 ccggccaact tcggcgtgac cgaggacgtc ggcgactacc gcttcggcga gcccttcgtc
     1861 agcgtcggca tcagcgacat tcgcggcatc aagaacaacc tggtgctgga ac
//
LOCUS       DATIHC010000859         2217 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_24672, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000859 DATIHC010000000
VERSION     DATIHC010000859.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2217)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2217)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2217
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24672"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1061)
                     /locus_tag="VLF16_14405"
     CDS             complement(<1..1061)
                     /locus_tag="VLF16_14405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017734388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSX72119.1"
                     /translation="MIDGQPLAVFQPFIDTATGRIAGIEALGRLRQDDGSLRSVGPLF
                     TDPKIPASQLRRLDRQIREDALARLAEAPADWFLSLNISPRWIGLLRPNQALPSLKQL
                     KRHAAPPERVVFEITELAGGGHKLASVVAQYREAGARIAIDDFGAGYSQLDRVLALQP
                     DILKLDMRLFQEAARGGPSGEVVRALAQMAEKTGCWIIAEGVETEAELDFALECGARF
                     VQGFLFAQPEEQFFATDAFVERFARLRDQYVQRKLAERARLMSLRRELADLMSLVRHW
                     AERGDGLDTLLDPSDYPWLLRIYQCDRHGTQLTPNLQWDGLNWQEDARYLGHNWSWRP
                     YFYQLLAEGWEERRLTLSST"
     gene            complement(1150..1470)
                     /locus_tag="VLF16_14410"
     CDS             complement(1150..1470)
                     /locus_tag="VLF16_14410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003289545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72120.1"
                     /translation="MSESLTSAARRDLRKELVRLRLEMHRQQLLYNAQPLTHPLQQFR
                     QMRQGDPSNVKTPLMVGAGVLLTLFGGRLGTFGKVARAALMLYPVVRGVKAVKKPSVE
                     HYHR"
     gene            complement(1467..1856)
                     /locus_tag="VLF16_14415"
     CDS             complement(1467..1856)
                     /locus_tag="VLF16_14415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008568997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HSX72121.1"
                     /translation="MDDDLQQPAAEPPKPSLKKLGGAFVGLLQGHLELLGIEFQEEKS
                     RSFRLFVFSGLSLIFGLLVLLGLSTVVLIAFWDTYRLPAAIGLCVVYALALLACVMKA
                     MRLARDGESPFRATMAELARNKERLLP"
     gene            complement(1869..>2217)
                     /locus_tag="VLF16_14420"
     CDS             complement(1869..>2217)
                     /locus_tag="VLF16_14420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014852576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF883 family protein"
                     /protein_id="HSX72122.1"
                     /translation="TSSTTPNIDKEAHRRNLRDAQNAMSSEFQTLIRDTESLLRQTSE
                     VAGHQMQELRTRITGNLGRARELLKETEHSLEQQGRVAMEKTEEYVHQHPWQTLGIAA
                     GVGFLLGLLAGRR"
BASE COUNT          372 a          694 c          776 g          375 t
ORIGIN      
        1 gtgctcgaca gggtcagccg gcgttcttcc cagccttcgg cgagcaattg atagaagtac
       61 ggccgccagg accagttgtg gcccaggtag cgtgcatcct cctgccagtt caggccgtcc
      121 cactgcaggt tcggggtgag ctgcgtgcca tgccggtcgc actggtagat gcgcagcagc
      181 caggggtagt cggacgggtc gagcagcgtg tcgaggccat cgccgcgttc ggcccagtga
      241 cgcaccaggc tcatcaggtc ggccagttcg cggcgcaagc tcatcagccg cgcccgctcg
      301 gccagcttgc gctgcacata ctggtcacgc aggcgggcga agcgctcgac gaaggcgtcg
      361 gtggcgaaga actgttcttc gggctgggcg aacagaaagc cctgcacgaa gcgcgcgccg
      421 cactcgaggg cgaagtcgag ctcggcttcg gtctccacgc cttcggcgat gatccagcag
      481 ccggtcttct ccgccatctg cgccagggcg cgcaccacct cgccgctggg gcctccgcgg
      541 gcggcttcct ggaacaggcg catgtccagc ttgaggatgt cgggttgcag cgccagcacg
      601 cggtccagct gcgaatagcc ggcaccgaag tcgtcgatgg cgatgcgtgc gccggcctcg
      661 cgatactgcg caaccaccga agcgagcttg tgcccgccgc cggcaagttc ggtgatctcg
      721 aacaccaccc gttccggtgg cgccgcgtgg cgtttcagct gcttgaggct gggtagcgcc
      781 tggttcgggc gcagcagtcc gatccagcgc ggcgagatat tgaggctgag gaaccagtcc
      841 gccggggcct cggccaggcg ggcgagggcg tcttcgcgga tctgccggtc gagtctgcgc
      901 agctgggacg cgggaatctt ggggtcggtg aagagtgggc ccaccgagcg caggctgcca
      961 tcgtcctgac gcagcctgcc gagggcctcg atgccggcga tgcggccggt ggcggtgtcg
     1021 atgaagggct gaaagactgc caggggttgc ccgtcgatca cgaaccgttt ccttgcactg
     1081 gatgaaaaac ttgaccggct ggaccggtcg gcgattcatc gcaattgcaa ggatggggcc
     1141 agttggccgt cagcggtgat agtgctctac gctcggcttt ttcaccgcct tcacgccgcg
     1201 caccaccgga tagagcatca gcgccgcgcg agccaccttg ccgaaggtgc cgaggcggcc
     1261 accgaacagc gtcagcagca cgccggcgcc gaccatcagc ggggtcttca cattggacgg
     1321 gtcgccctgg cgcatctggc ggaattgctg aagcggatgg gtcagcggct gagcgttgta
     1381 cagcagctgc tgacggtgca tctccagacg cagacgcacc agctccttgc gcaagtcgcg
     1441 gcgcgccgcg gaagtcaggg attcgctcat ggcaacaggc gctccttgtt acgggccagc
     1501 tccgccatgg tggcgcggaa cggcgactcg ccgtcgcgag ccaggcgcat ggccttcatc
     1561 acgcaggcca gcagggcgag tgcgtagacc acgcaaaggc caatggcggc aggcagacgg
     1621 taggtgtccc agaaggcaat cagcactacc gtcgacaggc ccagcaggac cagcaggccg
     1681 aagatcaggc tgagcccgga gaacacgaag aggcgaaacg aacgggactt ctcttcctgg
     1741 aactcgatac cgaggagttc cagatggccc tgcagcaggc cgacgaaggc tccgcccagt
     1801 ttcttcagag aaggcttggg cggctcggcc gccggctgct gaaggtcatc atccatggtg
     1861 catctccgtt agcggcgacc ggccagcagg ccgagcagga aacccacgcc ggcagcgatg
     1921 ccgagggtct gccagggatg ctgatgcacg tattcttcgg tcttttccat ggccacacgg
     1981 ccttgctgct ccaggctgtg ctcggtttcc ttgagcagct cgcgggcgcg acccaggttg
     2041 ccggtgatgc gggtgcgcag ctcctgcatc tggtggccgg cgacctcgga ggtctggcgc
     2101 agcaggcttt cggtgtcgcg gatcagggtc tggaactcgg aggacatggc gttctgcgcg
     2161 tcgcgcagat tgcggcgatg ggcttccttg tcgatgttcg gggtggtgct cgaggtg
//
LOCUS       DATIHC010000860         5046 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_38591, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000860 DATIHC010000000
VERSION     DATIHC010000860.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5046
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38591"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2074
                     /gene="hrpA"
                     /locus_tag="VLF16_14425"
     CDS             <1..2074
                     /gene="hrpA"
                     /locus_tag="VLF16_14425"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017361583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HSX72123.1"
                     /translation="AAQRAKSYAAVHKAILSGLLSQIGQKSEDGDYLGARQRRFWIHP
                     SSVIGRKKPAWIMTAELVETTKLFARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKRRG
                     QVVAYEQVTLYGLIVVGRRPVHFGPVDPVASRELFIRDGLVRGEINSRAKCLAANREL
                     LERLDELEAKARRRDILADEETLYAFYEARIPAEIHQAATFESWYKTEGAKNPQLLIM
                     REEDVLARDAKEVTAAQYPDILQLGELQLPLTYHFEPNHPRDGVTLRVPAPLLPQLPA
                     DRLEWLVPGLIEAKAIALVRNLPKALRKNFVPVPDFVGAALSKIAFGQGSLPESLGRE
                     LTRMTGARVSDEAWEEAVQQLESHLKMNLEVVDARGKFLGEGRDLAELTARFAEASQA
                     ALAIPQQKQEQKPVEAKAFAQVAEKTQQKIAGLSMTVFPALVEEGGVVKEGRFPTQAE
                     ADFQHRRALQKLLLQQLAEPAKYLRGKLPGLTELGLLYREMGRPEALVEDILLASLDA
                     CVLEGEATLPRDGATLAALAESRRGDWTSHAERIAKLTLEILKLAHGLQKRFKGKIDL
                     AQAMALNDIKQQLANLVYPGFVRETPGEWLKEIPRYLKAIEQRLDKVGSQVQRDRVWT
                     GELTAAWEQYQARAAKHAQEGKRDPELVLYRWMLEEYRVSLFAQQLGTRMAVSDKRLG
                     KQWAAVES"
     gene            2224..4323
                     /locus_tag="VLF16_14430"
     CDS             2224..4323
                     /locus_tag="VLF16_14430"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019341201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HSX72124.1"
                     /translation="MPNVLICLTVVLACLAVFLWQPLPLQKLRTALFDQYQRWQPRVY
                     QDVPVRIIDIDEQSLQRLGQWPWPRTQVAALVERLQAVGASVIAFDVLFAEADRTSPE
                     MMMRGDDLPPAIAQLLAALPSHDARLAAVVARSPVVLGFALERKPSPAGLPLSRFGLV
                     EQGGPVLGHLPAFQGAIRPLPLLEQAAGGSGTLTFRPDSDGVVRRVPMLVGLGQAVRP
                     SLIAEALRLQQRAGHYRAVSNAAGVERIDIGRLSIPTTAEGELWVHFSRAHAARTVPA
                     WQVLAGQAPAALADSIVLVGTSAQGLQDLRFSPLGGIIPGVEVHAQALEQILTGSYLQ
                     RPGWAIAVEALSLALGGLLVCLLALRLHALASASLTLGILLGLNALAWYAFTSQRLLI
                     DLFTPTLLLALVFVAASLIRHRAAEREQRWIRQAFSRYVSPNLVKHLVDNPGQLTLGG
                     HRQTCSFVFTDLTDFTEMVERKEPEAVVSLLNAYLDEVIAIAFRHEGTLDRIVGDAVA
                     IMFSAPLAQPDHCARALSCALEIHHFARRYAAELQARGIHFGQTRIGVHSGEVVVGNF
                     GGSTIFDYRALGDPVNTTSRIEGLNAHVGTAVCVSEVIRRQCPQVPMRPVGEVLLKGK
                     RQALRVFEPLQAAGIGGESDEAYEAAYSLLAGDDPGAGEAFDSLHAQRPDDGLVAFHA
                     ARLRAGERGDSFVMTRK"
     gene            complement(4337..4933)
                     /locus_tag="VLF16_14435"
     CDS             complement(4337..4933)
                     /locus_tag="VLF16_14435"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HSX72125.1"
                     /translation="MLRSLKRELFLLLVVLLTSGCASKSYVVLLESPDGSTGAIVVET
                     AKGVTRIDKSAHGVALDGADMKTFAVERPRIDKDFAAAMAAQPALPKTYLLYFRTGGT
                     ELTAQSKIAVQELLQTLRERGPSAVSVIGHTDTTSGNAWNEKLGLRRAQHIARLLEAA
                     GLQALELVVTSHGESNLLIPTADETPEPKNRRVEVTLR"
BASE COUNT          807 a         1722 c         1695 g          822 t
ORIGIN      
        1 ggcggcgcag cgcgcgaaga gctacgccgc cgtgcacaag gcgatcctgt ccggcctgct
       61 gagccagatc ggccagaaga gcgaggacgg tgattatctg ggcgcgcgcc agcggcgctt
      121 ctggattcac ccctcgtcgg tgatcgggcg caaaaagccg gcctggatca tgaccgccga
      181 gctggtggaa accaccaagc tgttcgcccg catggtggcc aagatcgagc cggactggat
      241 cgagccgctg gccggccacc tgatcaagaa gaaccacttc gaaccgcact gggagaaacg
      301 tcgtggccag gtcgtggcct acgagcaggt caccctgtac ggcctgatcg tggtcggccg
      361 ccgcccggtg catttcggcc cggtcgaccc ggtggcgtcg cgcgagctgt ttatccgtga
      421 cggcctggtg cgcggcgaga tcaacagccg cgccaagtgc ctggcagcca accgcgagct
      481 gctggaacgt ctcgacgagc tggaggccaa ggcccgccgc cgcgacatcc tggccgacga
      541 ggaaaccctg tacgccttct acgaggcgcg catcccggcc gagatccacc aggccgccac
      601 cttcgagagc tggtacaaga ccgagggcgc gaagaatccg cagctgctga tcatgcgcga
      661 ggaggatgtg ctggcgcgtg acgccaagga agtcaccgcc gcccagtacc cggacatcct
      721 ccagctcggc gagctgcaac tgccgctgac ctaccacttc gagcccaacc atccgcgcga
      781 tggcgtgacc ctgcgcgtgc cggcgccgct gctgccgcaa ctgccggcgg accgcctcga
      841 gtggctggtg ccgggcctga tcgaggccaa ggccatcgcc ctggtgcgca acctgcccaa
      901 ggccctgcgc aagaacttcg tgccggtgcc ggattttgtc ggcgccgcgc tctccaagat
      961 cgccttcggc caaggctcgc tgcccgagtc cctcggccgc gagctgaccc gcatgaccgg
     1021 cgcccgcgtc tccgatgagg cctgggagga agcggtgcag cagttggaaa gccacctgaa
     1081 gatgaacctg gaagtggtcg acgcccgtgg caagttcctc ggcgagggcc gcgacctggc
     1141 cgaactcacc gcgcgcttcg ccgaagccag ccaggccgcc ctggccattc cgcagcagaa
     1201 gcaggaacag aagccggtgg aggccaaggc cttcgcccag gttgcggaga agacccagca
     1261 gaagatcgcc ggcctctcca tgaccgtgtt cccggcgctg gtggaagagg gtggcgtggt
     1321 caaggaagga cgtttcccga cccaggccga ggccgatttc cagcaccgcc gcgcgctgca
     1381 gaagctgttg ctgcaacaac tggccgagcc agccaagtac ctgcgcggca agctgccggg
     1441 cctcaccgaa ctgggtctgc tctatcgcga aatgggtcgc cccgaggcgc tggtcgagga
     1501 catcctgctg gccagcctcg acgcctgtgt gctcgaaggc gaagccaccc tgccgcgcga
     1561 cggtgcgacg ctcgccgccc tggccgaatc gaggcgcggc gactggacca gccacgccga
     1621 gcgcatcgcc aagctcaccc tggagatcct caagctcgcc cacggcctgc agaagcgctt
     1681 caagggcaag atcgacctgg cccaggccat ggccctcaac gacatcaagc agcagctggc
     1741 caacctggtc tatcccggct tcgtccgcga gacaccgggc gagtggctga aggaaatccc
     1801 gcgttacctc aaggccatcg agcagcgcct ggacaaggtc ggcagccagg tacagcgcga
     1861 ccgcgtgtgg accggcgagc tgacggcagc ctgggagcaa taccaggcgc gcgccgccaa
     1921 gcacgcccag gaaggcaagc gcgacccgga gctggtgctg tatcgctgga tgctcgagga
     1981 ataccgcgtg tcgctgttcg cccagcagct cggcaccagg atggcggtgt ccgacaagcg
     2041 cctgggcaag cagtgggcgg cggtggagag ctgatcgcag gcggcggccg aaccctgcgg
     2101 tcagcatgat tgcctcgccg gcgcgccttc tcgtatggtg gcgcagccac ggcgcctgct
     2161 gagcgagcgc cgtgttccgt ccacgccgga gcctacgacc ccgtgcccca atcgcgacct
     2221 tccgtgccga atgtactgat atgcctgacg gtggttctgg cctgcctggc ggtttttctc
     2281 tggcaaccct tgcccctgca gaagctgcgt accgccctgt tcgaccagta ccagcgttgg
     2341 cagccgaggg tgtatcagga cgtgccggta cgcatcatcg atatcgacga gcagagcctg
     2401 cagcgcctcg gccagtggcc gtggccgcgt acccaggtcg cggcgttggt ggagcgtctg
     2461 caggcggtgg gtgcctcggt catcgccttc gatgtgctct tcgccgaagc cgaccgcact
     2521 tcgcccgaga tgatgatgcg cggcgacgac ctgccccctg ccattgcgca gctactcgcc
     2581 gcactgccgt cgcacgatgc ccgtctggcg gctgtcgtcg cgcgcagtcc ggtggtgctg
     2641 ggcttcgccc ttgaacgcaa accttcaccc gccggcttgc cgctgagccg tttcggcctg
     2701 gtcgagcagg gcggcccggt actcggccat ctgcctgcct tccagggggc gatccgacca
     2761 ttgccgctgc tcgagcaggc ggccggcggc agcggcacgc tcacgttccg gcccgatagc
     2821 gatggtgtgg tgcgtcgggt gccgatgctg gtcggcctcg gccaagccgt tcggccatcg
     2881 ctgattgccg aggccctgcg cctgcagcag cgagccggtc attaccgcgc cgtgagcaat
     2941 gcggcgggcg tcgagcgcat cgatatcggt cgcctgagca ttccgactac cgccgagggc
     3001 gagctctggg tgcatttcag ccgcgcccac gcagcgcgca cggtgcccgc ctggcaggtg
     3061 ctggcagggc aggcgcctgc tgcgctggcg gacagcatcg tgcttgtcgg cacgtccgcc
     3121 cagggcctgc aggaccttcg cttcagcccg ctcggcggga tcattcccgg tgtcgaggtg
     3181 catgcccagg cgctggagca gatcctcacc ggcagctacc tgcagcggcc gggctgggcc
     3241 atcgccgtgg aggcactgag cctcgcgctg ggcggtctgc tggtgtgcct gctcgcgcta
     3301 cgcctgcacg cgctggcctc ggcatcgctg accctcggca tcctcctcgg cctcaacgcc
     3361 ctggcctggt atgccttcac cagccagcgc ctgctgatcg acctgttcac tccgacgctg
     3421 ctgctggcgc tggtcttcgt cgccgcgagc ctgatccgcc acagggcggc cgagcgggag
     3481 cagcgctgga tacgccaggc cttctcacgc tacgtctcgc cgaacctggt caagcacctg
     3541 gtcgacaacc ccggccagct gaccctgggc ggccaccgcc agacctgcag cttcgtcttc
     3601 accgacctca ccgatttcac cgaaatggtc gagcgcaagg agccggaagc ggtggtcagc
     3661 ctgctcaacg cctacctcga tgaagtcatc gccatcgcct ttcgccatga aggcacgctc
     3721 gaccgcatcg tcggcgatgc ggtggccatc atgttctcgg caccgctggc ccagcccgac
     3781 cactgtgcgc gggcgctgtc ctgcgcactg gagatccatc atttcgcccg gcgctatgcg
     3841 gccgaattac aggcgcgagg catccacttc ggccagacgc gcatcggcgt gcacagcggc
     3901 gaggtggtgg tgggcaactt cggcggttcg acgatcttcg actaccgcgc gctcggcgat
     3961 ccggtgaaca ccacctcgcg catcgagggc ctgaatgccc atgtcggcac cgccgtgtgc
     4021 gtttccgagg tgattcgccg gcagtgccca caggtgccga tgcggccggt tggcgaggtg
     4081 ctgctcaagg gcaagcggca agcgctgcgg gtgttcgaac cgctgcaggc cgcgggcatc
     4141 ggtggagaat ccgacgaggc ctacgaggcg gcctacagcc tgctggccgg ggacgatccc
     4201 ggcgccggtg aggccttcga cagcctgcac gcgcaacgtc ccgacgatgg cctggtggcc
     4261 ttccatgccg cccgcttgcg ggcaggggag cggggcgact cgttcgtgat gacgcgcaag
     4321 tagcaggggc ggaacgctag cgaagggtga cttccacccg gcggttcttc ggttccggcg
     4381 tttcatcggc agtggggatc agcagattgc tttccccgtg cgaggtgacg accagctcca
     4441 gcgcctgcag accggcggcc tccagcaacc tggcgatgtg ctgtgcgcgg cgtagcccga
     4501 gcttctcgtt ccaggcattg ccgctggtgg tatcggtatg accgatcacc gacacggcgg
     4561 aggggccgcg ctcgcgcaac gtctgcagca gttcctgcac ggcgattttc gattgcgcgg
     4621 tcagttcggt gccaccggtt ctgaaataca gcaggtaggt cttcggcagc gccggctggg
     4681 ccgccatggc cgccgcgaaa tccttgtcga tgcgcgggcg ctccacggcg aaggtcttca
     4741 tgtccgcgcc atccagcgcc acgccgtgcg cgcttttgtc gatgcgggtg acgcccttgg
     4801 cggtctcgac gacgatcgcg ccggtgctgc cgtcggggct ttccaacagc accacgtaag
     4861 acttcgacgc gcagccggag gtgagcagaa cgacgagcag caggaacagc tcgcgcttta
     4921 acgaccgcag catcagctga ctttgaccag gaagcgcgtg cctcgtacgc cgatggtgcc
     4981 ggtcggggtg ttgatctgca cggcttcggg tttgagcttg gcgatgatgc cggagatgta
     5041 gttgag
//
LOCUS       DATIHC010000861         2537 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_15422, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000861 DATIHC010000000
VERSION     DATIHC010000861.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2537
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15422"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..805)
                     /gene="sbcB"
                     /locus_tag="VLF16_14440"
     CDS             complement(<1..805)
                     /gene="sbcB"
                     /locus_tag="VLF16_14440"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003157638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000175 - 3'-5'-RNA exonuclease activity
                     [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008310 - single-stranded DNA 3'-5' DNA
                     exonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease I"
                     /protein_id="HSX72126.1"
                     /translation="MSASIFWYDYETTGINPRCDRPLQMAGIRTDEQLNEIGEPVNLH
                     CRLSDDILPHPAACRITGITPQVLAEKGLPEAEFMARVHAELALPGTCGAGYNSLRFD
                     DEVTRYSLYRNFYDPYAREWQGGNSRWDLIDLVRTAYALRPEGIEWPKDEEGRVSLKL
                     ERLTVANGIEHGQAHDALSDVRATIGLARLIRDRQPRLYDFFYRLRSKARVAEQIQLL
                     QPLVHVSGRFAGSRSYLAVALPLAWHPRNRNALIVCDLHGDAQPLLELSV"
     gene            947..1753
                     /locus_tag="VLF16_14445"
     CDS             947..1753
                     /locus_tag="VLF16_14445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017519710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72127.1"
                     /translation="MNEVAIQNPYAVPSSDLMDKAAPGQALSIEEALTRGYNFSISDL
                     LGEAWRKTKGTKGIIWGGFFALFGALIGAQLAIYLLTLVLGVGAVGLAALGGGEGAAV
                     AGISGLILITLLSSLIMLAVTYPFMAGFNMVGIRQAAGQPVRFAEIFSHFNRTLPLLG
                     AGILMTIVTVIGFALFVLPGIYLSIALLLTIPLVVERKLSPWQAMMVSCKAISQHWFK
                     VFFLFLAMNIILWISMLPLGIGLIWTLPMVMVMIGALYNTIFGVLPPESN"
     gene            1847..>2537
                     /locus_tag="VLF16_14450"
     CDS             1847..>2537
                     /locus_tag="VLF16_14450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003448902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HSX72128.1"
                     /translation="MQPNPALSSTALLDTRRQVETPEGIDLILRPAGLMPRALAFGID
                     LLIRGAILLGAFILLGVLGQFGAGLGTILYFLVNWWYPVLFEVLYQGRTPGKKTMGLR
                     VVHDDGTPVGWAASLTRNLLRAVDMLPFAYCVGAISCLSHSSFKRLGDLAAGTLVVYR
                     DEEPKRPQIPEADIERAPFPLSLAEQRAVLDFAERRADLSGARRAELAAILAEPLGSL
                     PDHAEKRLHGIA"
BASE COUNT          392 a          874 c          792 g          479 t
ORIGIN      
        1 cgacggacag ttccagcaac ggctgggcgt cgccatgcag gtcgcagacg atcagggcgt
       61 tgcggttgcg ggggtgccag gccagcggta gcgccacggc caggtaactg cggcttcccg
      121 caaaacgtcc ggagacatga accagcggct gcaacagctg aatctgctcc gccaccctgg
      181 ccttgctgcg cagccgatag aagaagtcgt agagacgcgg ctggcgatcg cgaatcaggc
      241 gggccaggcc gatggtcgcg cgtacgtccg acaaggcgtc gtgggcctgg ccgtgctcga
      301 tgccattggc gacggtcagc cgctccagct tgagcgatac cctgccctcc tcatccttcg
      361 gccactcgat cccttcggga cgcaaggcgt aggccgtgcg caccaggtcg atcaggtccc
      421 agcggctgtt gccgccctgc cactcgcgcg cgtacggatc atagaagttg cgatacaggc
      481 tgtagcgggt cacctcgtca tcgaagcgca agctgttgta gccggcgcca caggtgccgg
      541 gcaaagccag ttcggcgtgc acgcgcgcca tgaactcggc ctcgggcagg cccttttccg
      601 cgaggacctg gggtgtgata ccggtgatcc gacaggccgc cggatgcggc aggatgtcgt
      661 ccgagaggcg gcaatgcagg ttgaccggct cgccgatctc gttgagctgc tcgtcggtgc
      721 gaatgcccgc catctgcagc ggtcggtcgc aacgcgggtt gatgcccgtg gtttcgtagt
      781 cgtaccagaa gatgctggcg ctcatgtgcg gtccttgaac ggtcgaggcg gcagtctagc
      841 aaagcatgat ctcgctcacg cgaaggtgcg cccatgcttg ctggcgcgag gccactgtcg
      901 ctaggatgcg ggcttggaaa aactccatga ccagggaaag tctcacatga atgaagtagc
      961 gattcagaac ccctatgccg tgcccagtag cgacctgatg gacaaggcgg ccccgggcca
     1021 agccctctcc atcgaggaag ccctcacccg cggctacaac ttctcgattt ccgatctgct
     1081 gggcgaagcc tggcgcaaga ccaaaggcac caagggcatc atctggggcg gcttcttcgc
     1141 cctctttggc gcactgatcg gcgcgcagct ggcgatctac ctgctgacgc tggtgctggg
     1201 cgtcggcgcc gtcggcctgg ccgcgctggg cggtggtgag ggtgccgccg tcgccggcat
     1261 ctccggcctg atcctcatca ccctcctcag ctcgctgatc atgctggcgg tgacctaccc
     1321 cttcatggcc ggcttcaaca tggtcggcat tcgccaggcg gccggccagc cggtgcgctt
     1381 cgctgaaatc ttcagccatt tcaaccgcac cctgccgctg ctgggcgcgg gcatcctgat
     1441 gaccatcgtc accgtcatcg gcttcgctct gttcgttctg ccgggcatct acctgtccat
     1501 cgccctgctg ctgaccatcc cgctggtggt ggagcgcaag ctgtcgccct ggcaggccat
     1561 gatggtgtcc tgcaaggcca tcagccagca ttggttcaag gtgttcttcc tgttcctggc
     1621 gatgaacatc atcctctgga tcagcatgct gccgctgggc atcggcctga tctggaccct
     1681 gccgatggtc atggtgatga tcggtgcgct gtacaacacc atcttcggtg tgctgccgcc
     1741 tgagtccaac tgatccgctg tcagaattcg ggccgccgcg ggcggcccga ttgctttagc
     1801 gtcctgctgc tggctagcat caggctttct tcgatgcagt tgaccgatgc agcctaaccc
     1861 cgccctctcc agcaccgcgc ttctggacac ccgccgtcag gtggaaaccc cagaaggcat
     1921 cgacctgatt ctgcgccccg ccggcctcat gccccgcgcc ctggcgttcg gtatcgatct
     1981 gctgatccgc ggcgccattc tgctcggcgc gttcatactg ctcggagtgc tcggccagtt
     2041 cggcgccggc ctcggcacca tcctctactt cctggtcaac tggtggtacc ccgtgctctt
     2101 cgaggtgctg taccagggcc gtacccccgg caagaagacc atgggcctgc gcgtggtaca
     2161 cgacgacggc accccggtcg gctgggccgc ctcgctgacc cgcaacctgc tgcgcgccgt
     2221 ggacatgctg ccattcgcct actgcgtcgg cgccatcagc tgcctcagcc actcctcgtt
     2281 caagcgcctc ggcgatctcg ctgccggcac cctggtggtc taccgcgacg aggagcccaa
     2341 gcgcccgcag attcccgagg ccgacatcga gcgcgcgccc ttcccgctca gcctcgccga
     2401 gcagcgcgcc gtgctggact tcgccgagcg ccgcgccgat ctctccggcg ctcgccgcgc
     2461 cgagctggcc gccatcctcg ccgagccgtt gggcagcctg ccggaccatg ccgagaagcg
     2521 cctgcacggt attgccc
//
LOCUS       DATIHC010000862         2219 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_1563, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000862 DATIHC010000000
VERSION     DATIHC010000862.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2219
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1563"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1538)
                     /locus_tag="VLF16_14455"
     CDS             complement(<1..1538)
                     /locus_tag="VLF16_14455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009267 - cellular response to starvation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation CstA family protein"
                     /protein_id="HSX72129.1"
                     /translation="MNNNNSLLRHLPWVVLAVVGACALGVVALRRGEAINALWIVVAA
                     VALYLVAYRYYALFIANKVMQLDPTRATPALLNNDGLDYVPTNKHILFGHHFAAIAGA
                     GPLVGPVLAAQMGYLPGTLWLIAGVVLAGAVQDFMVLFLSTRRNGRSLGDMVREEMGR
                     IPGTIALFGCFLIMIIILAVLALIVVKALAESPWGMFTVMATIPIAVFMGVYMRFIRP
                     GRIGEVSLIGVVLLLASIWVGGLVAADPVWGPAFTFTGVQITWMLVGYGFVAAVLPVW
                     LILAPRDYLSTFLKIGTIIALAIGILVVMPELKMPALTQFTDGTGPVWKGTLFPFLFI
                     TIACGAVSGFHALISSGTTPKLLANESHARYIGYGGMLMESFVAIMAMVAASVIEPGV
                     YFAMNSPAAVVGSDAAAVAATVSSWGFAITPDALEAVAKDIGENTILARAGGAPTLAV
                     GIAQILHSVLPGENTMAFWYHFAILFEALFILTAVDAGTRVARFMLSDSLGNVFPKFK
                     DTSWR"
     gene            1799..2170
                     /locus_tag="VLF16_14460"
     CDS             1799..2170
                     /locus_tag="VLF16_14460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HSX72130.1"
                     /translation="MSDTTTERRRFQRIAFDAATELAQGERRWEAELHDVSLKGLLLR
                     RPRDWNGDPNQPFIATISLDADTRLKMEVVLTRTRDDLLGFVCRHIDLDSISHLRRLV
                     ELNLGDESLLERELAALGEPD"
BASE COUNT          435 a          732 c          742 g          310 t
ORIGIN      
        1 cgccacgagg tgtccttgaa cttcgggaac acgttgccca gggagtcgga gagcatgaac
       61 cgggccacgc gggtgccggc gtccacggcg gtgaggatga acagcgcctc gaacagaatg
      121 gcgaagtggt accagaacgc catggtgttt tcgcccggca gcacgctgtg gaggatctgc
      181 gcgatgccca cggcgagggt cggcgcaccg ccggcacggg ccaggatggt gttctcgccg
      241 atgtccttgg ccaccgcctc cagcgcgtcg ggggtgatgg cgaagcccca gctgctgacg
      301 gtcgcggcca ccgcggcggc gtcggagccg accaccgcgg ccgggctgtt catggcgaag
      361 tacacgcccg gctcgatcac cgaggcggcg accatggcca tgatggcgac gaacgactcc
      421 atcagcatgc cgccgtagcc gatgtagcgg gcgtgcgact cgttggccag cagcttgggc
      481 gtggtgcccg agctgatcag cgcgtggaag ccggacaccg cgccgcaggc gatggtgatg
      541 aacaggaacg ggaacagggt gcccttccac accgggccgg tgccgtcggt gaactgggtc
      601 agcgccggca tcttcagctc gggcatgacc accaggatgc cgatggccaa agcgatgatg
      661 gtgccgatct tgaggaaggt cgacaggtag tcgcgcgggg cgaggatcag ccacaccggc
      721 agcaccgcgg cgacgaagcc gtagcccacc agcatccagg tgatctgcac gccggtgaag
      781 gtgaaggccg ggccccacac cggatcggcg gcgaccaggc cacctaccca gatcgacgcc
      841 agcagcagca ccacaccgat gagcgagact tcaccgatcc gtccgggacg gatgaagcgc
      901 atgtacacgc ccatgaacac cgcgatgggt atcgtcgcca tcaccgtgaa catgccccag
      961 gggctctcgg ccagggcctt gaccacgatc agcgccagca ccgcgaggat gatgatcatg
     1021 atcaggaagc agccgaacag ggcgatggtg cccggtatcc ggcccatctc ctcgcgcacc
     1081 atgtcgccca gcgagcgacc gttgcgacgg gtggagagga acaggaccat gaagtcctgc
     1141 accgcgccgg ccagcaccac gccggcgatc agccagagcg tgccgggcag gtaacccatc
     1201 tgcgcggcga gcaccgggcc gaccagcggg ccggcgccgg cgatggcggc gaaatggtga
     1261 ccgaagagga tgtgcttgtt ggtcggcaca tagtccagac cgtcgttgtt gagcagcgcc
     1321 ggcgtggcgc gggtggggtc gagctgcatc accttgttgg cgatgaacag cgcgtagtag
     1381 cgataggcga ccagatagag ggccaccgcg gccaccacga tccagagcgc gttgatggct
     1441 tcgccgcggc gcagcgccac gacacccaag gcacaggcgc ccaccacggc caacaccacc
     1501 cagggcaggt ggcgcagcag gctattgtta ttgttcatga ttactcctaa ccgatagaca
     1561 gacaggctgc cgcccaagct tagacgctga atcgaaaccg cattattcga ccttggtcta
     1621 gcgcccggtc cagagccgtt tcaggcgtta cactgcgcgc ccgcgcgagg tgtcgggaga
     1681 gacggttgcg attgccggaa cccggcttcg tcgacaccgt cagcagtagg aaggatggcc
     1741 cggcgacagc gacagtgcgc cttggctata gtggatgaaa ccgcagagga tacccatcat
     1801 gagtgatacg accaccgagc gtcgacgctt ccagcgtatc gccttcgacg ccgccaccga
     1861 actcgcccag ggcgagcggc gctgggaggc cgagttgcac gatgtgtcgc tcaaggggct
     1921 gctgctcagg cgaccgcgcg actggaacgg cgatccgaac cagcccttca tcgccaccat
     1981 cagcctggac gccgacaccc gcctgaagat ggaagtggtg ctgacccgca cccgcgacga
     2041 cctgctcggc ttcgtctgcc ggcatatcga cctggactcc atcagccacc tgcgccgcct
     2101 ggtcgaactc aacctcggcg acgagagcct gctggaacgc gaactcgccg ccctgggcga
     2161 gccggactga aaccccgccc cgcaacgccg cagggtgcgc catgcgcacc catcgactc
//
LOCUS       DATIHC010000863         2918 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17760, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000863 DATIHC010000000
VERSION     DATIHC010000863.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2918)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2918)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2918
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17760"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1156
                     /locus_tag="VLF16_14465"
     CDS             <1..1156
                     /locus_tag="VLF16_14465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017677304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YfbK domain-containing protein"
                     /protein_id="HSX72131.1"
                     /translation="VAIKATELSAAELPPANLVFLVDVSGSMDRREGLPMVQSTLKLL
                     VDQLRPQDRVALVTYAGNASVVLESTAGSEKAKIRTAIDQLTAGGSTAGESGIQLAYQ
                     EAQKGRLKDGINRILLATDGDFNVGISDFETLKQLAADKRKTGVSLTTLGFGTDNYNE
                     QLMEQLADAGDGNYAYIDNLREARKVLVDQLSSTLAVVAKDVKIQVEFNPAEVSEYRL
                     LGYENRALKREDFSNDKVDAGEIGAGHTVTALYEVVPVGAKGWLEPLRYAQAPEQQGK
                     AGEIAWLRLRYKAPEGGASKLVERPINKGAATPIAKASDDLRFAAAVAAFAQQLKDAT
                     YTCSFGLADSARLARGAKGEDPFGLRGEFVQLVELAQSLQTPQNVQVRAD"
     gene            1157..1741
                     /locus_tag="VLF16_14470"
     CDS             1157..1741
                     /locus_tag="VLF16_14470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003243664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HSX72132.1"
                     /translation="MNLPLQDDDAALLRRYRNGDAAAFAQLYERHRLGLFRFLLGLCG
                     DHALAEEVFQDTWMSLIRSASEQREAVLFKTWLYQIARNRLIDHWRKSGRHQGKLDEY
                     DEAQHASADPGPGPEQQLLLSRDQERLQAALADLPEEQREVFLLRAHGDLELHQIAEL
                     TRTPAETVKSRLRYALNKLRRLLADPASAEEVSA"
     gene            1738..2538
                     /locus_tag="VLF16_14475"
     CDS             1738..2538
                     /locus_tag="VLF16_14475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72133.1"
                     /translation="MSPHDNDLQQEQQLLEHFRQHNRGEPSAAVDALILAAARQAAEA
                     PRPSLSQRLHAWLFGADSRSRWPMAVAGLAVFGIGLNLALQTGDQPSEPPALARAPAP
                     ALQEMAPAGEQAMSPQYKNAERSLAGSVESPAAFSASPPAAAALRQAPAAKPQSAPVE
                     ALADSAAAPSEREEARTSAADRNKAKAAAEAGALVQQHAQAAAGKGGMLAEDVPSLPE
                     RLRAVLQLRAEGKQGEADQLLAALKGEYPQHDLEAELKRLQSEMDGAR"
     gene            2641..>2918
                     /locus_tag="VLF16_14480"
     CDS             2641..>2918
                     /locus_tag="VLF16_14480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72134.1"
                     /translation="MKGFHHQPAAMIALRTLALAAALAVLTACDDAPKPPAPVPAPPK
                     TAPAPVDAAPPAAVKTPEPAEKVSLSAPPAPITKSPEPEPDPEPAMTLR"
BASE COUNT          522 a         1021 c          981 g          394 t
ORIGIN      
        1 ggtggcgatc aaggccaccg agctgagcgc cgccgagctg ccgccggcca acctggtgtt
       61 cctggtcgac gtgtccggct cgatggaccg ccgcgagggc ctaccgatgg tgcagagcac
      121 gctcaagctg ctggtcgatc agctgcgccc gcaggaccgc gtggccctgg tcacctatgc
      181 cggcaatgcc agcgtggtgc tggagtccac cgccggtagc gagaaggcca agattcgcac
      241 tgccatcgac cagctcaccg cgggcggctc caccgccggc gagtcgggta tccagctggc
      301 ctaccaagag gcgcagaagg gccggctcaa ggacggcatc aaccgcatcc tgctggccac
      361 cgatggcgac ttcaacgtcg gcatcagcga cttcgagacg ctcaagcaac tggccgccga
      421 caagcgcaag accggtgtgt cgctgaccac cctgggcttc ggtaccgaca actacaacga
      481 acagctgatg gagcaactgg ccgatgccgg cgacggcaac tacgcctaca tcgacaatct
      541 gcgcgaggcg cgcaaggtgc tggtcgacca gctcagctcg accctggccg tggtggccaa
      601 ggatgtgaag atccaggtcg aattcaaccc ggccgaggtc agcgagtacc gcctgctggg
      661 ctacgagaac cgcgcgctaa agcgcgagga cttcagcaac gacaaggtcg atgccggcga
      721 gatcggcgcc ggacataccg tcaccgcctt gtacgaagtg gtgccggtgg gcgccaaggg
      781 ctggctggag ccgctgcgct atgcccaggc gcctgagcag cagggcaagg ccggcgagat
      841 cgcctggctg cgcctgcgct acaaggcccc tgagggtggc gccagcaagc tggtcgagcg
      901 gccgatcaac aagggcgcgg cgacgccgat cgccaaggcc agtgacgacc tgcgtttcgc
      961 cgcggcggtg gccgccttcg cccagcagct caaggatgcc acgtacacct gcagcttcgg
     1021 cctggccgac agcgccaggc tggcgcgtgg cgccaagggc gaggacccgt tcggcctgcg
     1081 tggcgagttc gtgcaactgg tcgaattggc gcagagcctg caaactccgc aaaacgttca
     1141 agtcagggcc gactaattga acctacccct gcaagacgat gacgccgcgt tgctgcggcg
     1201 ttatcgcaac ggcgacgcgg cagcgttcgc ccaactctac gagcgtcacc gcctcggtct
     1261 gtttcgtttc ctcctcggcc tgtgcggcga ccatgccctg gccgaggaag tgttccagga
     1321 cacctggatg agtctgatcc gcagcgccag cgagcaacgc gaggcggtgc tgttcaagac
     1381 ctggctgtac caaatcgcgc gcaaccgcct gatcgaccac tggcgcaaga gcggccgcca
     1441 ccagggaaag ctcgatgaat acgacgaggc gcagcacgcc agcgccgacc cgggccccgg
     1501 ccccgagcag caactgctgc tcagccgcga ccaggaacgc ctgcaggcgg cgctggccga
     1561 cctgcccgag gagcagcgcg aggtgttcct gctgcgcgcc cacggcgacc ttgaacttca
     1621 ccagatcgcc gaactcaccc gtactccggc ggaaaccgtg aagagccggc tgcgttacgc
     1681 gctgaacaag ttacgtcggc tgctggccga tccggcttcg gccgaggagg tatccgcatg
     1741 agcccacacg acaacgacct gcagcaggaa cagcaactgc tggagcactt ccgccagcac
     1801 aaccgcggcg aaccctcggc ggcggtggat gcgctgatcc tggccgccgc tcgccaggcc
     1861 gcagaggccc cgcgtccgag cctgagccag cgcctgcacg cctggttgtt cggagcggac
     1921 agccgttccc gctggcccat ggccgtggcc ggtctggcag tgttcggcat cggcctcaac
     1981 ctggctctgc agaccggcga tcagccgtcc gagccgcccg cgctggcccg cgccccggcg
     2041 cctgcgttgc aggaaatggc accggccggt gagcaggcga tgagtccgca atacaagaac
     2101 gccgagcgct cgctggccgg ttcggtggag tcgccggcgg ccttctcggc ctcgccccct
     2161 gctgccgccg cgcttcggca agcgcccgcg gccaaaccgc agtccgcccc ggtggaggcc
     2221 ctggccgatt ccgccgcggc gccgtccgag cgtgaggagg ctcggacgtc ggctgccgac
     2281 aggaacaagg ccaaggcggc cgccgaggcc ggagccctgg tccagcagca cgcgcaggcc
     2341 gcggcgggga agggcgggat gctggccgag gatgtgccct cgctgccgga gcgtctacgc
     2401 gccgtgctgc agctgcgcgc cgaaggaaag cagggtgaag cggatcagct gctggcggcg
     2461 ctcaagggcg agtatccaca gcatgatctg gaggccgagc tgaaacgcct gcagagcgaa
     2521 atggatggcg cgcgctagca ggcaacgagc agggaggcag ctgggcggcg ccagcgccgc
     2581 ctcgctgtgc aacatcggga aaagccctgt ggcttgccag atcgcccatc tggcgcgagc
     2641 atgaaggggt tccatcacca acctgccgcc atgatcgctc ttcgcacgct ggcgctggct
     2701 gcggcactcg ctgtgctgac agcctgcgac gatgccccca aaccaccggc gccggtcccg
     2761 gcgccgccca agaccgcgcc cgcgccggtc gacgctgccc ctcccgctgc ggtgaaaacg
     2821 ccggaaccgg ccgagaaggt ctcgctttcg gcgccgcctg cgccgatcac gaaaagcccc
     2881 gagcccgaac ccgatccaga gcccgcaatg acgctccg
//
LOCUS       DATIHC010000864         2522 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_45670, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000864 DATIHC010000000
VERSION     DATIHC010000864.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2522
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45670"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..626)
                     /gene="cbiE"
                     /locus_tag="VLF16_14485"
     CDS             complement(<1..626)
                     /gene="cbiE"
                     /locus_tag="VLF16_14485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007161118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046025 - precorrin-6Y
                     C5,15-methyltransferase (decarboxylating) activity
                     [Evidence IEA];
                     GO_process: GO:0046140 - corrin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-6y C5,15-methyltransferase
                     (decarboxylating) subunit CbiE"
                     /protein_id="HSX72135.1"
                     /translation="MTAWLTVVGIGEDGYAGLGKAARRALLAAECIVGAPRQLDLLPP
                     CIRAPRQNWPSPFSLEPVLQRRGTPTCVLASGDPMLFGVGASLARQVNEGEMLVLPAP
                     SSYSLAAARMGWPLQDVSLLSVVARPLPAVARHLHDGQRLLILCNDGDSPAAIAALLR
                     ERGFGASRLGVLEHLGGPLERRIDGLAADWNIDQVAALNLLAVECRADT"
     regulatory      689..887
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            978..2282
                     /gene="cobG"
                     /locus_tag="VLF16_14490"
     CDS             978..2282
                     /gene="cobG"
                     /locus_tag="VLF16_14490"
                     /EC_number="1.14.13.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003464848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016709 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen, NAD(P)H as one donor, and incorporation
                     of one atom of oxygen [Evidence IEA];
                     GO_process: GO:0019250 - aerobic cobalamin biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-3B synthase"
                     /protein_id="HSX72136.1"
                     /translation="MKPDPSTAAVHVPRPSACPGLWRVVPAKDGGICRVKLPGGLLTS
                     NQARAVVAAARTHASGVLELTNRSNLQIRGVREACQGALVQRLLDAGLGPRHADADDV
                     RNVLISPAAGRDPAAHLDTRPLAERLLALLQDVPAFHDLSPKFAVQLDGGEALAMLDH
                     PHDIWLSALPGGRQLAFGLAGCPRSDALGVVEVDQAVQLVETLLHLFLELAGEHSRMR
                     QLLAELPAQAFLARLPFAFQRATPSFISPALDGAPLGMHAQAQPGRVMLLAGAPLGRL
                     QAEQLQALADLADAEGSGELRLTPWQGVLLPDVSTDRQTSVVQAMSDIGLLLDARAPL
                     ARMLACSGTAGCAKAAADTKADALRLADQLGPHGSAQVHLCGCSRSCAAAHIAPYTLL
                     AQPGGRYDLYRREQGLAGFGRLLAASLDIDQAGEYLAAGTPE"
     gene            2279..>2522
                     /locus_tag="VLF16_14495"
     CDS             2279..>2522
                     /locus_tag="VLF16_14495"
                     /EC_number="5.4.99.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016993 - precorrin-8X methylmutase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-8X methylmutase"
                     /protein_id="HSX72137.1"
                     /translation="MIEYIRDGQEIYRQSFATIRAEADLSAIPADLEKLAVRLIHACG
                     MVDVVQDLRFSPGAGTAGRTALAKGAPILCDARMVAE"
BASE COUNT          377 a          895 c          859 g          391 t
ORIGIN      
        1 gtatcggcgc ggcactcaac ggccagcaga ttgagcgcgg cgacctggtc gatattccag
       61 tcggcggcca ggccatcgat gcgccgctcc agcgggccgc ccaggtgttc cagcacgccc
      121 aggcgactgg cgccgaagcc acgctcgcgc agcagggcgg cgatggcggc ggggctatcg
      181 ccgtcgttgc acaggatcag caggcgctgg ccgtcatgca gatggcgggc gacggcgggc
      241 agaggacgcg ccaccaccga caggaggctc acgtcctgca gcggccagcc catgcgcgca
      301 gcagccaggg aataggagga gggcgccggc agcaccagca tttcaccttc gttcacctgg
      361 cgcgccaggc tggcgccgac accgaacagc atggggtcgc cgctggccag cacgcaggtc
      421 ggtgtgccgc gtcgctgcag caccggctcc aggctgaagg ggctcggcca gttctgccgt
      481 ggggcgcgga tgcatggcgg cagcaggtcg agctggcgcg gcgcaccgac gatgcattcg
      541 gccgccagca gcgcgcggcg cgccgccttg cccaggccgg cgtagccgtc ttcgccaatg
      601 cccactaccg tcagccaggc cgtcatctgt gtctcctcga tgccttgcgg tcgacgcgcg
      661 ggcttggctc ggcgtcggga aaagcgggca taatagcgcc ttcgtcggtg cccgacccgc
      721 tttgcgggaa acgcttgggc ctaagaggga acacggcaca aaccgtggct gcccccgcaa
      781 ctgtaagcag cgagtcgctt cacacacatg ccactgagca atcgggaagg ccgtgcagcg
      841 atgacgacct gtcagccagg agacctgccg acgacgcagt cgcgagtgcc aacatcgggc
      901 ggggtgtacc gatgccaaga aatccctgtg cggatttcac tggttcggtc gccgcgtcgt
      961 tcgctgtcgg tgaccgtttg aagcccgatc cctccaccgc cgctgtgcat gttccccggc
     1021 cctccgcctg cccggggctg tggcgtgtcg tgccggcgaa agatggcggc atctgccggg
     1081 tcaagctgcc cggtggcctg ctcactagca accaggctcg cgccgtagtc gcggccgcgc
     1141 gaacccatgc cagcggcgtg ctggagctga ccaaccgcag caacctgcag atccgtggtg
     1201 tacgcgaggc gtgccagggc gcgctggtgc agcggctgct cgacgccggc ctcggcccgc
     1261 gccacgccga tgccgacgat gtgcgcaatg tgctgatcag ccccgccgcc ggccgcgatc
     1321 ctgcggccca tctcgatacc cgcccgctgg ccgaacgact gctggcgctg ctgcaggacg
     1381 tgcccgcgtt ccatgacctc tcgcccaaat tcgccgtgca gttggatggc ggcgaggccc
     1441 tggccatgct cgatcatccg cacgatatct ggctcagcgc cttgcccggc ggccgccagt
     1501 tggccttcgg cctggccggt tgcccgcgca gtgatgcgct gggtgtggtc gaggtggacc
     1561 aggcagtgca gctggtagaa acgctgctgc acctgttcct cgaactggcc ggtgagcact
     1621 cgcgcatgcg ccagctgttg gccgagctgc cggcgcaggc tttcctcgcc cgcctaccat
     1681 tcgccttcca gcgcgcgact ccaagcttca tcagtccagc gctggatggc gcgccgctgg
     1741 gcatgcatgc ccaggcccag ccggggcggg tgatgctgct ggccggcgcg ccgctcgggc
     1801 ggctgcaagc cgagcagctg caggccctgg ccgatctggc ggatgccgaa ggcagcggag
     1861 agctgcgcct cactccctgg cagggcgtgc tgctgccgga tgtctccact gatcgccaga
     1921 ccagcgtggt gcaagccatg agcgacatcg gtctgctgct ggatgcccgc gcgccgctgg
     1981 cacggatgct cgcctgcagt ggcaccgccg gctgcgccaa ggccgcggcg gacaccaagg
     2041 ccgatgccct gcgcctggcc gatcagctgg gtccgcacgg ctcggcgcag gtacacctgt
     2101 gtggctgctc gcgcagctgc gctgccgccc acatcgcccc ttacacgctg ctggcccagc
     2161 ctggcggccg ttatgacctc tatcgccgcg agcagggcct ggccggattc ggccgtctgc
     2221 tggcggcgtc cctcgatatc gaccaagccg gcgagtacct cgccgcagga acacccgaat
     2281 gatcgaatac atccgcgatg gtcaggagat ctatcgccaa tccttcgcca ccatccgtgc
     2341 cgaggccgac ctcagcgcca tcccggccga cctggagaaa ctcgccgtgc gcctgatcca
     2401 cgcctgcggc atggtcgacg tggtgcagga tctgcgcttc tcgcccggtg ctggcaccgc
     2461 tggccgtacg gcactggcca agggcgcgcc gatcctctgc gacgcacgca tggtggccga
     2521 ag
//
LOCUS       DATIHC010000865         1731 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_22414, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000865 DATIHC010000000
VERSION     DATIHC010000865.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1731)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1731
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22414"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..415
                     /gene="purH"
                     /locus_tag="VLF16_14500"
     CDS             <1..415
                     /gene="purH"
                     /locus_tag="VLF16_14500"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253541.1"
                     /note="involved in de novo purine biosynthesis; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HSX72138.1"
                     /translation="NGMVEDLELKVVTKRAPTAQELVDMKFAFKVAKHVKSNAVVYAK
                     DGQTAGIGAGQMSRVNSARIAAIKAEHAGLEVKGAVMASDAFFPFRDGIDNAAKAGIT
                     AVIQPGGSMRDAEVIAAADEAGIAMVFTGMRHFRH"
     gene            645..>1731
                     /gene="purD"
                     /locus_tag="VLF16_14505"
     CDS             645..>1731
                     /gene="purD"
                     /locus_tag="VLF16_14505"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HSX72139.1"
                     /translation="MNVLIIGSGGREHALAWKVAQDKRVEKVFVAPGNAGTATEAKCE
                     NVAIDVLAIEQLADFAEKNVQLTIVGPEAPLVKGVVDLFRSRKLDIFGPTAAAAQLEG
                     SKAFTKDFLARHNIPTADYQNFTEVEPALAYLREKGAPIVVKADGLAAGKGVIVAMTL
                     EEAEEAVRDMLSGNAFGDAGARVVIEEFLDGEEASFIVMVDGENVLPMATSQDHKRVG
                     DGDTGPNTGGMGAYSPAPVVTPDVHKRVMDEVIYPTVRGMASEGNVYTGFLYAGLMID
                     KAGKPKVIEFNCRFGDPETQPIMVRLESSLVLLVEAALAKALDKVEATWDPRPTVGVV
                     LAAGGYPGDYAKGAVIEGLDAAAKIDGK"
BASE COUNT          334 a          584 c          567 g          246 t
ORIGIN      
        1 caacggcatg gtcgaggacc tcgaactgaa ggtcgtgacc aagcgtgcgc cgaccgcgca
       61 ggaactggtc gacatgaagt tcgccttcaa ggtcgccaag cacgtcaagt cgaatgcggt
      121 ggtctacgcc aaggacggcc agacggccgg catcggcgcc ggccagatga gccgcgtcaa
      181 ctccgcacgc atcgccgcca tcaaggccga gcatgccggc ctggaagtga agggcgcggt
      241 gatggcctcg gacgccttct tcccgttccg cgacggcatc gacaacgcgg ccaaggccgg
      301 catcaccgcg gtgatccagc cgggcggctc gatgcgcgat gcggaagtca tcgccgcggc
      361 cgacgaagcc ggcatcgcca tggtgttcac cggcatgcgc cacttccgcc actgaccgtg
      421 gcacggccgc gctgaagcgc ccgtctgcgt tgttggaggc cgattcgccg atgctcattg
      481 ccacgaggca actgcgctcg tccaaccgac ctccgcctag cagccagacg ctccatcacg
      541 gcccgataga gagctagaaa caagcgtcgt agcccggatg aaatccggga acacccccac
      601 tcaaagcccc ggattgcatc cgggctacgg tcaggagata ccccatgaac gtactgatca
      661 tcggcagcgg cggtcgcgag cacgccctgg cctggaaagt ggcgcaggac aagcgcgtcg
      721 agaaggtctt cgtcgccccg ggcaatgccg gcaccgccac cgaagccaag tgcgagaacg
      781 tcgccatcga cgtactggcc atcgagcagc tggccgactt cgccgagaag aacgtgcagc
      841 tgaccatcgt tggcccggaa gcgccgctgg tgaagggcgt ggtcgacctg ttccgttcgc
      901 gcaagctgga catcttcggc cccactgccg ccgccgccca gctggagggt tccaaggcct
      961 tcaccaagga cttcctcgcg cgccacaaca tccccactgc cgactaccag aacttcaccg
     1021 aggtcgagcc ggccctggcc tacctgcgtg aaaaaggcgc accaatcgtg gtcaaggccg
     1081 acggcctggc cgccggcaag ggcgtgatcg tcgccatgac cctggaagag gccgaagagg
     1141 ccgtgcgcga catgctgtcg ggcaacgcct tcggtgacgc cggcgcacgc gtggtgatcg
     1201 aggaattcct cgacggcgag gaagccagct tcatcgtcat ggtcgacggc gagaacgtgc
     1261 tgccaatggc caccagccag gaccacaagc gcgtcggcga cggcgacacc ggtccgaaca
     1321 ccggcggcat gggcgcgtat tcgccggctc cggtcgtgac tccggacgtg cacaagcggg
     1381 tgatggacga agtgatctac ccgaccgtgc gcggcatggc cagcgaaggc aacgtctaca
     1441 ccggcttcct gtatgccggc ctgatgatcg acaaggccgg caagcccaag gtcatcgagt
     1501 tcaactgccg cttcggcgac ccggagactc agccgatcat ggtgcgcctg gaaagctccc
     1561 tggtgctgct ggtcgaggcc gccctggcca aggcgctgga caaggtcgag gcgacctggg
     1621 acccgcgtcc gaccgtgggc gtggtgctgg ccgccggcgg ctaccctggc gactacgcca
     1681 agggcgccgt gatcgaaggc ctggatgcgg ccgccaagat cgacggcaag g
//
LOCUS       DATIHC010000866         1609 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_1632, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000866 DATIHC010000000
VERSION     DATIHC010000866.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1609
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1632"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(152..1114)
                     /locus_tag="VLF16_14510"
     CDS             complement(152..1114)
                     /locus_tag="VLF16_14510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase"
                     /protein_id="HSX72140.1"
                     /translation="MKALQGVEGQLEWGERPVPACDVGQVRIRVAAAGLNRADLLQRA
                     GHYPPPPGASDILGLECSGVVVEAGAGSHWQVGERVCALLAGGGMAEEVVIDARHALP
                     VPEGLSLAEAAALPEVYATAWLNLFQLAALKPGEKVLLHAGASGVGSAAIQLCRAFGN
                     PCWVSVGSAERLAYCEGLGAQGGALRGEGLDSLHDLGPFDVILDPVGASYAELNLELL
                     ARDGRWVNIGLMGGSKAQLDMALLLGKRVQLTGSTLRNRDDQFKAELLADLQRNVWPL
                     FAEGRLKPQLERTYAARDADAAFAELASNQVAGKLVLLIDETLN"
     gene            1222..>1609
                     /locus_tag="VLF16_14515"
     CDS             1222..>1609
                     /locus_tag="VLF16_14515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020289243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail-specific protease"
                     /protein_id="HSX72141.1"
                     /translation="MRYHLPSRRTYMQRFLPATALALCLGLHALPAAAKAAAENWAYL
                     QPDRDQVIASLNVVELLKRHHYNKPPLDDARSAKVYEGYLKMLDPARSYFTTADIAQF
                     DRWKNKFDDLLKSGELEPGFIIYRTYL"
BASE COUNT          270 a          612 c          487 g          240 t
ORIGIN      
        1 atcccgatcc gaccctgcgc gctcatgccg agcaggccgg ctgggaaatc ctcgactgga
       61 aatagcgcgc tctcgctcgc cggaccggag ggtgcgcggt gcgcaccacg gagacattgg
      121 gtgcgcacgg cgcaccctac ggatcacccg atcagttcag ggtctcgtcg atcagcagca
      181 ccagtttgcc ggccacctgg ttgctggcca gctcggcgaa ggccgcatcc gcatccctgg
      241 ccgcataggt acgctccagc tgcggcttca accgcccctc ggcgaacagt ggccagacgt
      301 tgcgctgcag gtcggccagc agctcggcct tgaactggtc gtcgcggtta cgcagggtcg
      361 agccggtcag ctggacgcgc ttgcctagca gcagcgccat gtccagctgc gccttgctgc
      421 cgcccatcag gccgatattc acccagcgcc cgtcgcgggc cagcagctcc aggttgagct
      481 ccgcgtagct ggcgcccacc ggatcgagga tcacatcgaa cgggccgagg tcatgcaggc
      541 tatccaggcc ctcgccgcgc agcgcgccac cctgggcgcc gagaccttcg cagtaggcca
      601 gccgctcggc cgagccgacg ctgacccagc acggattgcc gaaggcccgg cacagctgga
      661 tcgccgccga gcccacacca ctggcgccag cgtgcagcag caccttttcg ccgggcttga
      721 gcgcggccag ctgaaataga ttgagccagg cggtggcata tacctcgggc agcgccgccg
      781 cctcggccag cgacaagccc tccggcaccg gcagcgcgtg gcgggcgtcg atcaccacct
      841 cttcggccat gccgccgccg gccagcagtg cgcagacccg ctcgcccacc tgccagtgac
      901 tgccggcacc ggcctccacc accacgccgg aacactccag gccgaggatg tcgctggcgc
      961 ccggcggcgg cgggtagtgc ccggcgcgct gcagcaggtc ggcgcggttc agaccggccg
     1021 ctgccacgcg aatgcggacc tggcccacat cgcaggcagg aacaggcctc tcgccccact
     1081 ccaactgccc ttcgacgcct tgcaatgcct tcatgctgcc tccatagtga gtgagccccg
     1141 cgcgccccac gtctgttgcg gggctttcgc cttttgccgc cggaatcaaa cggaacccgg
     1201 cgctctacca gacggcctaa tatgcgttat cacttgccct cgcgtcgaac ctacatgcag
     1261 cgttttctcc ccgctaccgc cctggccctg tgcctcggcc tgcacgccct gcccgccgcc
     1321 gccaaggccg ccgcggaaaa ctgggcctac ctgcagccgg accgcgatca ggtgatcgcc
     1381 agtctcaacg tggtggagct gctcaagcgc caccactaca acaagccacc gctggacgac
     1441 gcccgctcgg cgaaggtcta cgagggctac ctgaagatgc tcgacccggc gcgcagctat
     1501 ttcaccaccg ccgacatcgc ccagttcgac cgctggaaga acaagttcga cgacctgctc
     1561 aagagcggcg aactggagcc cggcttcatc atctaccgca cctacctgc
//
LOCUS       DATIHC010000867         3046 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27262, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000867 DATIHC010000000
VERSION     DATIHC010000867.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3046
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27262"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1608
                     /locus_tag="VLF16_14520"
     CDS             <1..1608
                     /locus_tag="VLF16_14520"
                     /inference="COORDINATES: protein motif:HMM:NF013094.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HSX72142.1"
                     /translation="GSVIELLVRSGAEHLILVDNGSYELNNANRQNMVVGDIGRAKVE
                     VFAERVRQINPYVRLELQGHGVTPDNVEALVAQADVVVDAIDVTGRAGLEMKYLLHRV
                     CRRQYKPVVCGYDMAAAQYIPVFDYRNPDLQVLGGLLGAEQVAALDPLQACTFLVPVE
                     CVPLEMYAELDRHLAGKDYTSQLGIAAHLFGTLATALILDLINGRPVRDAIYVDVWEL
                     TRRRDAQAEREHQALLDQGRQALAQWRELPPERPDGFFLERSVKHYQPPQLAALRDYE
                     QFRIDRRAGIASYAIPNYQLDNNLTRQLLRFAFVHYARVGFINPQEAACRQLHAEPLK
                     YLAQEDVHIVLVRESDHQLLAYSTLKAPIARDMRFDAAQRPAFGVENAFGRDLYAQVA
                     ELQSLPVEQVREIGRVTKAQIGDPVLEAKAGLLLLSAYGRLLCRTDSGVLAMVGDGER
                     QVTLRNLDFFGFRPQVLPARAACIAPQHLYANRYQGREVHPFWLRLDAVDRERIAQIE
                     ALIELEGDEFLTRLRDAKQQNTLHIGA"
     gene            1611..2825
                     /locus_tag="VLF16_14525"
     CDS             1611..2825
                     /locus_tag="VLF16_14525"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HSX72143.1"
                     /translation="MNGIWNEQQQAIRAHYLAVGRDLVRPTSALRDRELGFDRELWRA
                     LGATGLFGVHMPARFGGQGLGIWEFSAALEGFSEGCQDMGVLVSFVAQVALVQSALLS
                     YGSEEQLQRWLPPLISGEKIGCFAITEQGCGSDVRSLKLAARRDGSGYRLNGLKWNIT
                     NAPVADICMTFARLEEAGANAISCFITETAKPGLTQSAPFELMGNRGTPIGSLSFDEV
                     ALDADSLINGEGQGLRVLYFGFLVERIFTGVVISGCMQPLIDECLQYSLKRQAFGRPI
                     SDNQYVQGHIVQAYTQLELLRGVVVRGLNELEQGRDCSTLASIIKMLASEALHDACLN
                     AMRIHGNYGYRRDHYYERLLRDSIGLFFAGGTSEIHKHVIWTNLVAEAQSGGKHKDDL
                     RLDAYTGEGAAA"
     gene            2822..>3046
                     /locus_tag="VLF16_14530"
     CDS             2822..>3046
                     /locus_tag="VLF16_14530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72144.1"
                     /translation="MKPRAVALLSWMLHRPWLMLGVLLLVTALAVAAVGRLEINSTPY
                     MIDKSHPSRVADADNKRLFSNTGEQAFVALE"
BASE COUNT          495 a         1096 c          991 g          464 t
ORIGIN      
        1 ggcagcgtca tcgagctgct ggtgcgcagc ggcgccgagc acctgatcct cgtcgacaac
       61 ggcagctacg agctgaacaa cgcaaaccgg cagaacatgg tcgtcggcga catcggtcgc
      121 gccaaggtcg aggtgttcgc cgagcgggtg cggcagatca acccctacgt caggctggag
      181 ctgcagggtc acggggtcac gccggacaac gtcgaggcgc tggtcgccca ggccgacgtg
      241 gtggtcgacg ccatcgacgt caccgggcgc gccgggctgg agatgaagta cctgctgcac
      301 cgcgtctgcc ggcgccagta caagccggtg gtgtgtggtt acgacatggc cgccgcccag
      361 tacatcccgg tgttcgatta ccgcaacccg gacctgcagg tgctaggtgg cctgctcggc
      421 gccgagcagg tggcagctct cgatccgctg caggcctgta ccttcctggt gcccgtggag
      481 tgcgtgccgc tggagatgta cgccgagctg gaccgccacc tggccggcaa ggactacacc
      541 tcgcagctgg gcatcgccgc ccacctgttc ggcacgctgg cgaccgcgct gatcctcgac
      601 ctgatcaacg gccgccctgt gcgcgacgcc atctacgtcg acgtctggga gctgacccgt
      661 cgccgcgacg cccaggccga gcgcgagcac caggcgctgc tggatcaggg ccgccaggca
      721 ctggcgcagt ggcgcgagct gccgcccgag cggcccgacg gcttcttcct cgagcgctcg
      781 gtcaagcact accagccgcc gcagctcgcc gccctgcgcg actacgagca gttccgcatc
      841 gaccgccgcg ccggtatcgc cagctatgcc attcccaact accagctgga caacaacctc
      901 acccgccagc tgctgcgctt cgccttcgtg cattacgcca gggtcggctt catcaacccg
      961 caggaagccg cgtgccgcca gctgcatgcc gaaccgctga agtatctggc gcaggaggac
     1021 gtgcacatcg tcctggtgcg cgagagcgac catcagctgc tggcctattc caccctcaag
     1081 gcgccgatcg cccgcgacat gcgtttcgac gccgcgcaac gtcccgcctt cggcgtggag
     1141 aacgccttcg gccgcgacct ctatgcgcag gtcgccgagc tgcagtcgct gccggtggag
     1201 caggtgcgcg agatcggccg cgtgaccaag gcacagatcg gcgatccggt gctcgaggcc
     1261 aaggccggcc tgctcctgct cagcgcctat gggcgcctct tgtgccgcac cgacagcggc
     1321 gtgctggcca tggtcggcga cggcgagcgc caggtgaccc tgcgcaacct cgacttcttc
     1381 ggcttccgcc cgcaggtcct gccggcgcgc gccgcctgca tcgcgcccca gcacctttac
     1441 gccaaccgct accagggccg cgaagtgcac cccttctggc tgcgcctgga cgccgtcgac
     1501 cgcgagcgca tcgcgcagat cgaggcgctg atcgagctcg aaggcgacga attcctcacc
     1561 cggctgcgcg acgccaagca gcagaacacc ctgcacatag gagcatgaac atgaacggta
     1621 tctggaacga gcaacagcag gccatccgcg cccactacct ggccgtcggc cgcgacctgg
     1681 tacgcccgac gtccgccctg cgcgaccgcg agctgggctt cgaccgcgag ttgtggcgcg
     1741 ccctaggcgc caccgggctg ttcggcgtgc acatgccggc acgcttcggc ggccagggcc
     1801 tcggtatctg ggaattctcc gcggccctgg aaggcttctc cgagggctgc caggacatgg
     1861 gcgtactggt gtccttcgtc gcccaggtgg cgctggtgca gtcggcgctg ctcagctacg
     1921 gcagcgagga gcagctgcag cgctggctgc cgccgctgat cagcggcgag aagatcggct
     1981 gcttcgccat caccgagcag ggctgcggct ccgacgtgcg ctcgctgaag ctggcggcgc
     2041 gccgcgacgg cagcggctac cgcctgaacg gcctgaagtg gaacatcacc aacgcgccgg
     2101 tggcggacat ctgcatgacc ttcgcccgcc tggaggaggc cggtgccaac gccatctcct
     2161 gcttcatcac cgaaaccgcc aagcccggcc tgacgcagtc cgccccgttc gagctgatgg
     2221 gcaaccgcgg cacgccgatc ggcagcctga gcttcgacga ggtggcgctg gatgccgaca
     2281 gcctgatcaa cggcgagggg cagggcctgc gggtgctcta cttcggcttc ctggtcgagc
     2341 gcatcttcac cggcgtggtc atctccggct gcatgcagcc gctgatcgac gagtgcctgc
     2401 agtacagcct caagcgccag gccttcggcc ggccgatcag cgacaaccag tacgtgcagg
     2461 gccatatcgt ccaggcctac acccagctgg agctgctgcg cggcgtggtg gtccgcggcc
     2521 tcaacgagct ggagcagggc cgcgactgct cgaccctggc ctcgatcatc aagatgctgg
     2581 ccagcgaggc gctgcacgac gcctgcctca acgccatgcg catccacggc aactatggct
     2641 accgccgcga ccactactac gagcgcctgc tgcgcgattc catcggcctg ttcttcgccg
     2701 gcggcaccag cgagatccac aagcacgtga tctggaccaa cctggtggcc gaggcgcaga
     2761 gcggcggcaa gcacaaggac gacctgcgtc tggacgccta caccggcgaa ggagccgccg
     2821 catgaagcct cgcgccgtcg cgctgctctc ctggatgctg catcggccct ggctgatgct
     2881 cggcgtcctg ctgctggtca ccgccctggc ggtggccgcg gtgggtcgtc tggagatcaa
     2941 cagcaccccc tacatgatcg acaagagcca ccccagccgg gtcgccgatg ccgacaacaa
     3001 gcgcctgttc tccaacaccg gcgagcaggc cttcgtcgcc ctggag
//
LOCUS       DATIHC010000868         2381 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17835, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000868 DATIHC010000000
VERSION     DATIHC010000868.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2381
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17835"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1094
                     /gene="aceF"
                     /locus_tag="VLF16_14535"
     CDS             <1..1094
                     /gene="aceF"
                     /locus_tag="VLF16_14535"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009404143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045254 - pyruvate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0004742 - dihydrolipoyllysine-residue
                     acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HSX72145.1"
                     /translation="AASPAPAAPQAEKAAPTAASAPASHSTPPGARPEVAAEVGAIAA
                     LSAAAAAVTAPVRDGSKVHAGPAVRMTAREFGVDLAAVPGTGPKGRILKEDVQNYVKA
                     MLQQAKNAPAAGATGGAGIPPVPAVDFSKFGEVEEVPMTRLMQVGAANLHRSWLNVPH
                     VTQFDSADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAHLLKELPDFNSSLAPSG
                     KALIRKKYVHIGFAVDTPDGLLVPVIRDVDQKSLLQLAGEAAELADKARNKKLSPDAM
                     QGACFTISSLGHIGGTGFTPIVNAPEVAILGVSKATMQPVWDGKAFQPKLMLPLSLSY
                     DHRVINGAAAARFTKRLGDVLADIRTLLL"
     gene            complement(1336..1866)
                     /locus_tag="VLF16_14540"
     CDS             complement(1336..1866)
                     /locus_tag="VLF16_14540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011914862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72146.1"
                     /translation="MRLGLTRRLSGLLLMLSLGTGAPAQASEAQLGGEEQTRYLAELK
                     RLYLTKDERKALLAHSNALLDTYALRAGYQLGKAPTQRSDLRYQLSVAGPGELLVRQE
                     TRAEKAQSLAVNKQRLSVFGLDPYIRYECPTSGITCVLTNPADGSPWITVLRDHQGAA
                     DLAKAISFLIRNLQKN"
     gene            2038..>2381
                     /locus_tag="VLF16_14545"
     CDS             2038..>2381
                     /locus_tag="VLF16_14545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HSX72147.1"
                     /translation="MKSHPDAASRQAAEVVTQLPVPSRLGMLRFERINEASWTLLFLD
                     PACERRFGVSAGELCALLDSPYASLMEPEARYRLHDEIQLQLLNAQHYSVRYRLHTPN
                     GALHLLEIGETF"
BASE COUNT          402 a          855 c          751 g          373 t
ORIGIN      
        1 gcgccgcgtc gccggcacca gccgcgcccc aggcggagaa ggccgcaccg accgctgcct
       61 cggcgcccgc gagccacagc acgccgccgg gcgcccggcc ggaagtggcc gcggaggtcg
      121 gcgccatcgc cgcgctgtcc gctgccgcgg cggccgtcac cgcacccgtg cgtgacggca
      181 gcaaggtcca cgccggcccg gccgtgcgca tgaccgcccg cgagttcggc gtcgacctgg
      241 ccgccgtgcc gggcaccggc ccgaaaggcc gcatcctcaa ggaagacgtg cagaactacg
      301 tcaaggccat gctgcagcag gccaagaacg ccccggcagc aggcgccacc ggcggtgccg
      361 gcatcccgcc ggtcccggcc gtggacttca gcaagttcgg cgaagtcgaa gaagtgccga
      421 tgacccgcct gatgcaggtc ggcgccgcca acctgcaccg cagctggctc aacgtgcccc
      481 acgtgaccca gttcgacagc gccgacatca ccgagctgga agccttccgc gtggcgcaga
      541 aggcggtggc ggagaaggcc ggcgtcaagc tgaccgtgct gccgctgctg ctcaaggcct
      601 gtgcccacct gctcaaggag ctgccggact tcaacagttc gctggcgccg agcggcaagg
      661 cgctgatccg caagaagtac gtgcacatcg gcttcgccgt cgacaccccg gatggcctgc
      721 tggtgccggt gatccgcgac gtcgaccaga agagcctgct gcaactggcc ggcgaggccg
      781 ccgagctggc cgacaaggcg cgcaacaaga agctctcgcc ggacgccatg cagggcgcct
      841 gcttcaccat ctccagcctc ggccacatcg gcggcaccgg cttcacgccg atcgtcaacg
      901 cgccggaagt ggcgatcctc ggtgtgagca aggccaccat gcagccggtg tgggatggca
      961 aggccttcca gcccaagctg atgctgccgc tgtcgctctc ctacgatcac cgggtgatca
     1021 acggcgcagc cgccgcgcgc ttcaccaagc gcctgggcga cgtgctggcg gatatccgca
     1081 ccctgctgct gtaacgaacc aagctgtgct ttggaggcat cgacgcctca ctcctcggcc
     1141 cctcctcttg gcggggcttt tttattcagg agtgccaacg tggaagcgag ccgcttggcg
     1201 tcggcctacc gatcagccgt agcccggatg caatccggga aacaggcaac tccgcccgga
     1261 ttacatccgg gccatcccac tgcagacaaa gaaaagcccc gcggaagcgg ggcttttcgt
     1321 gcatcagcct gccgttcagt tcttctgcag attgcgaatc aggaagctga tcgccttggc
     1381 caggtcggcc gcgccctggt ggtcgcgcag cacggtgatc cacgggctgc cgtcggccgg
     1441 gttggtgagc acacaggtta tgccactggt gggacattca taacggatat aagggtcgag
     1501 cccgaacacc gacagacgct gcttgttcac cgccaggctc tgcgcctttt ccgcccgggt
     1561 ttcctggcgc accagcagct cgccgggccc ggcgacgctc agctggtagc gcaggtcgct
     1621 gcgctgcgtc ggggccttgc ccagctggta gccggcgcgc agcgcatagg tgtcgagcag
     1681 cgcgttgctg tgcgccagca gcgccttgcg ctcgtccttg gtcaggtaaa gccgcttgag
     1741 ctcggccaga tagcgcgtct gctcctcccc gcccagctgg gcctcgctgg cctgcgccgg
     1801 ggcacccgtg cccaggctca gcatcagcaa taacccgctc agtcttcttg tcagtcccag
     1861 ccgcatgatg cacccttgcc gaacttggtt gatgtaacag acctaggaac ccgctgaagc
     1921 cccgcccgcc catcgatgca ggtcaggaag cactgccttc tgacctcacc cgcgagccgg
     1981 acgcaaacgg ttctaagcct gcccggaagc ggcagcataa tggaagccag tcgttcgatg
     2041 aaaagccatc ccgatgccgc tagccgtcag gcggccgagg ttgtgacgca gttgccagtg
     2101 ccttcgcgcc tgggcatgct gcgcttcgag cgtatcaatg aggccagctg gaccctgctg
     2161 ttcctcgatc ccgcctgcga acgccgcttc ggcgtcagtg ccggtgaact ctgcgccctg
     2221 ctcgactccc cctacgccag cctgatggaa cccgaggcgc gctaccgcct gcacgacgag
     2281 atccagctgc agctgctcaa cgcccagcat tactcggtgc gctaccgcct gcacacgccc
     2341 aacggcgccc tgcacctgct ggagatcggt gagaccttcc a
//
LOCUS       DATIHC010000869         1593 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17843, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000869 DATIHC010000000
VERSION     DATIHC010000869.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1593
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17843"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..185)
                     /locus_tag="VLF16_14550"
     CDS             complement(<1..185)
                     /locus_tag="VLF16_14550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003205104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HSX72148.1"
                     /translation="MKPSRLFLGLLGGLLALAVVLGTLPLLDIKLPQSLQPLWWGLLL
                     ALLLIAGLDAARLRRLPS"
     gene            complement(182..1267)
                     /locus_tag="VLF16_14555"
     CDS             complement(182..1267)
                     /locus_tag="VLF16_14555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HSX72149.1"
                     /translation="MSENIPQQPSTTPEATTAPADVTSSTAVAGAAPAAAPVNPVAQQ
                     RQRATQMLQALRQELQKAVVGQREVVDDVLTALIAGGHVLVEGVPGLGKTLLVRALAK
                     CFGGEFARIQFTPDLMPSDVTGHAVYDLASEQFKLRKGPAFTNLLLADEINRAPAKTQ
                     AALLEVMQERQITLEGRAMPVPQPFLVLATQNPIEQEGTYPLPEAELDRFMLKLRMDY
                     PQADEELTLVRQVTRSAKADMLEVAPLRTLLQAKDVLALQKIASELQIDDQVLDYAVR
                     LARATRSWPGLAMGAGPRASIALVRGGRARALLRGGDFVVPDDVKACALAVLRHRVRL
                     APELDIEGLSVDQVLQQLLDQVPAPRL"
     gene            complement(1264..>1593)
                     /locus_tag="VLF16_14560"
     CDS             complement(1264..>1593)
                     /locus_tag="VLF16_14560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4350 domain-containing protein"
                     /protein_id="HSX72150.1"
                     /translation="RHGPLLAPQAASRRQLEEHLRAGADFLLRRAGQQRLLGNLQRDI
                     LRRARHRHPGFERLAVADQWQVLGRLTRLPSSAISAAMRPLPTRRLSAADFTRQVANL
                     QTLRNAL"
BASE COUNT          238 a          520 c          604 g          231 t
ORIGIN      
        1 gacggcaggc ggcgcaggcg ggcggcgtcc aggccggcga tcagcagcag cgccagcagc
       61 agaccccacc acaacggctg caggctctgc ggcagcttga tgtcgagcaa cggcagcgta
      121 cccagcacga cggccagggc cagcaggcca ccgagcaggc cgagaaacag gcgcgatggc
      181 ttcacaggcg cggcgccgga acctgatcga gcagctgttg cagcacctgg tcgacggaca
      241 ggccctcgat atccagctcc ggcgcgaggc gtacgcggtg gcgcaggacg gccagggcgc
      301 aggccttgac gtcgtccggc accacgaagt cgccgccgcg cagcagggca cgagcccgac
      361 cgccgcggac cagggcgatg gaggcgcgcg gtccggcacc catggccagg cccggccagc
      421 tgcgggtggc gcgagccaga cgcacggcgt agtcgagcac ctgatcgtcg atctgcagct
      481 cgctggcgat cttctgcagg gccagcacgt ccttggcctg cagcagggtg cgcagtggcg
      541 ccacctcgag catgtcggcc ttggcggaac gggttacctg acgcaccagg gtcagttctt
      601 cgtcggcctg cggatagtcc atgcgcagct tgagcatgaa acggtccagc tcggcttccg
      661 gcaacgggta ggtgccctcc tgctcgatgg ggttctgcgt ggccagcacc aggaacggct
      721 ggggcaccgg catggcgcgg ccttccagcg tgatctggcg ctcctgcatc acctccagca
      781 gggcggcctg ggtcttggcc ggcgcgcggt tgatctcgtc ggccagcagc aggttggtga
      841 aggccgggcc cttgcgcagc ttgaactgct cgctggcgag gtcgtacacg gcgtggccgg
      901 tgacgtcgct gggcatcagg tcgggggtga actggatgcg cgcgaattcg ccgccgaagc
      961 acttggccag cgcgcgcacc agcaaggtct tgcccaggcc gggcacgccc tcgaccagta
     1021 cgtggccgcc ggcgatcagc gcggtgagca cgtcatccac cacttcgcgc tggccgacga
     1081 ccgccttctg cagctcctgg cgcagggcct gcaacatctg ggtggcgcgc tggcgctgct
     1141 gggccaccgg attcaccggg gctgcagcgg gtgctgcgcc ggcgactgcc gtcgagctgg
     1201 tgacatccgc cggcgccgta gtcgcttcgg gagtggtgct gggttgctgc gggatgtttt
     1261 cgctcatagg gcattcctga gggtttgcag gttggcgacc tggcgggtga agtcggctgc
     1321 ggacaggcgc cgcgtcggca agggccgcat ggccgcactg atggcgctgc tggggaggcg
     1381 ggtgaggcgt ccgagcactt gccactgatc ggccacggcg aggcgctcga aaccgggatg
     1441 gcgatggcgg gcacgacgca gaatgtcgcg ttgcagattg ccgagcaggc gctgttggcc
     1501 ggcgcggcgc agcaggaaat cggcgccggc gcgcaggtgc tcctcgagct gtcggcgcga
     1561 cgcggcctgc ggcgccagca acgggccgtg gcg
//
LOCUS       DATIHC010000870         2579 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_22474, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000870 DATIHC010000000
VERSION     DATIHC010000870.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2579
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22474"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            239..757
                     /locus_tag="VLF16_14565"
     CDS             239..757
                     /locus_tag="VLF16_14565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003241180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hcp family type VI secretion system effector"
                     /protein_id="HSX72151.1"
                     /translation="MPTPAYLSLEGTKQGLITAGTFTEDSVGNIFQEGHEDQILVQAF
                     NHQVIIPRDPQSGQPTGQRVHKPLMITKVFDKASPLIFNSLTSGERLSKCRLEWYRTS
                     STGTQEHYFTIELEDAVIVDVQSRMPNCQDPNMAHFTHLEDVYFTYRKIVWTHEVSGT
                     SGSDDWRSPISA"
     gene            907..>2579
                     /locus_tag="VLF16_14570"
     CDS             907..>2579
                     /locus_tag="VLF16_14570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019340462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033104 - type VI protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tip protein VgrG"
                     /protein_id="HSX72152.1"
                     /translation="MFAPANQTHFSLSLPGVEHDLQVLEFTGYEALSQPFVFEVTLVS
                     QCPDLELETLLGQPAFLTLDAQGNGIHAQVHACAQGDSGQRLTRYHLTLRPQLAWLGH
                     RINQRIFQHLSVPEIVAQVLSEHGILEGSGQRFQLGAVYPKRDYCVQYDESDLHFLQR
                     LCEEEGIHYHFQHSPDGHVLVFGDDQTGFPKLATTDYQQDSGLVADDPVIKRFALRLA
                     TRTSRVTRRDYDFEKPRLQLEAAHKGEAKPDLEDYDYPGRFTERGRGKHLSQRALERH
                     RSDHLLAEGESDQPLLRTGHFLDLNAHPRADWNQLWLLSEIHHEGKQPQVLEESITSF
                     IGGRKEEGQADDGFNQGYRNRFSATPWDLPWRPPLDHPKPRILGSQSAVVTGPKGEEI
                     HCDQYGRVKVQFHWDREGQADDATSCWLRVSSSWAGDRYGGVAIPRIGMEVLVTFLEG
                     DPDQPLVTGCLYHAAHVVPYDLPANKTRTVFKTLSSPGGGGYNELRIEDRKGQEQIYI
                     HAQKDWDENVEHDQKIRIGHERHDTVEANSYTELKAEEHRTTHKDRKTE"
BASE COUNT          495 a          973 c          751 g          360 t
ORIGIN      
        1 ccaccaccac gccagcccgc cagcgccgcg ccccacggcc cctgcgcaag cccctgcgca
       61 gccctgcgcc agttcttgcg caacctttcg tgacgcgtcg cacaggccgt ctctcaaggc
      121 tccgagcacc gcgccacaac ccgcgtcatt gctggctccg agcccgctgg cacgccactt
      181 gtacccgttc aggcgcccgg accattcccg gtcctcgtct cacagcaagg agagcaccat
      241 gccaacaccc gcgtatctgt ccctcgaagg caccaagcaa ggcctgatca ccgccggcac
      301 cttcaccgag gactcggtcg gcaacatctt ccaggaaggc cacgaggacc agatcctggt
      361 acaggccttc aaccaccagg tcatcattcc gcgcgacccg cagtccggcc agccgaccgg
      421 ccagcgcgtg cacaagccgc tgatgatcac caaggtcttc gacaaggcct cgccgctgat
      481 cttcaactcc ctgacctccg gtgagcgtct gtccaagtgc cgcctggagt ggtaccgcac
      541 ctcctccacc ggcacccagg agcactactt caccatcgag ctggaagacg ccgtgatcgt
      601 cgacgtgcag tcgcgcatgc cgaactgcca ggacccgaac atggctcact tcacccacct
      661 ggaagacgtc tacttcacct accgcaagat cgtctggacc cacgaagtgt ccggcacgtc
      721 cggctccgac gactggcgtt cgccgatctc cgcctgatcc gcggagcgcc gggagagggc
      781 atttttgccc cgcgcgtcac ggcaaggccg cggcgcatcc cggacaatgc ctcggctcgc
      841 aggtaagcga gccgccccat cggccaggca tgctggccga tgccctttcg gcagaaggaa
      901 acacggatgt tcgctcccgc caaccagacg catttcagcc tgagcctgcc gggcgtcgag
      961 cacgacctgc aggtgctcga gttcaccggc tacgaggccc tgagccagcc cttcgtgttc
     1021 gaggtcaccc tggtcagcca gtgtccggac ctggagctgg agacactgct cggccagccg
     1081 gcctttctca ccctggatgc gcagggcaac ggcatccacg cccaggtaca cgcctgtgcc
     1141 cagggcgatt ccggccagcg cctgacccgc tatcacctga ccctgcgccc gcagctggcc
     1201 tggctcggcc atcgcatcaa ccagcgcatc ttccagcacc tgagcgtgcc ggagatcgtc
     1261 gcccaggtgc tgagcgagca cggcatcctc gagggcagcg gccagcgctt ccaactcggc
     1321 gccgtctacc ccaagcgcga ctattgcgtg cagtacgacg agtccgacct gcacttcctc
     1381 cagcgcctgt gcgaggaaga aggcatccac tatcacttcc agcactcgcc cgacggccat
     1441 gtgctggtgt tcggcgacga ccagaccggt ttccccaagc tcgccaccac cgactaccag
     1501 caggactcgg ggctggtggc ggacgacccg gtgatcaagc gcttcgccct gcgcctggcc
     1561 acccgcacca gccgcgtcac ccgccgcgac tacgacttcg aaaagccgcg cctgcagctc
     1621 gaagccgcgc acaagggtga ggccaagccg gacctggaag actacgacta ccccggccgc
     1681 ttcaccgagc gcggccgcgg caagcacctg tcccagcgcg ccctggagcg ccatcgcagc
     1741 gaccacctgc tcgccgaggg cgagagcgac cagccgctgc tgcgcaccgg ccatttcctc
     1801 gacctgaacg cccacccgcg cgcggactgg aatcagctgt ggctgctgag cgagatccac
     1861 cacgagggca agcagccgca ggtgctggaa gagtccatca ccagctttat cggtgggcgc
     1921 aaggaagaag gacaagccga cgacggcttc aaccagggct accgcaaccg cttcagcgcc
     1981 accccctggg acctgccctg gcgcccgccg ctggaccacc ccaagccgcg catcctcggc
     2041 agccagagcg ccgtggtcac cggacccaag ggtgaagaaa tccactgcga ccagtacggt
     2101 cgggtgaagg tgcagttcca ttgggaccgc gagggccagg ccgatgacgc caccagctgc
     2161 tggctgcgcg tcagctccag ctgggccggc gaccgctacg gcggcgtcgc cattccgcgc
     2221 atcggcatgg aggtgctggt caccttcctc gaaggtgacc ccgaccagcc gctggtcacc
     2281 ggctgcctgt accacgccgc acatgtggtg ccctatgacc tgccggcgaa caagacccgg
     2341 accgtcttca agacgctcag ctcaccgggc ggcggtggct acaacgagct gcgcatcgag
     2401 gaccgcaagg gccaggagca gatctacatc cacgcccaga aggactggga cgagaacgtc
     2461 gagcacgacc agaagatccg catcggccac gaacgccacg acacggtgga ggccaacagc
     2521 tacaccgagc tcaaggccga ggagcaccgc accacgcaca aggaccgcaa gaccgagat
//
LOCUS       DATIHC010000871         2415 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_15551, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000871 DATIHC010000000
VERSION     DATIHC010000871.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2415
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15551"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..796)
                     /locus_tag="VLF16_14575"
     CDS             complement(<1..796)
                     /locus_tag="VLF16_14575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HSX72153.1"
                     /translation="MQNDPARLDPELLLASLNDAQCQAVAAPLGRQLVLAGAGSGKTR
                     VLVHRIAFLIQFLNASPYSILSVTFTNKAAAEMRQRIEQMLGLSPSGMWVGTFHGLAH
                     RLLRAHWREAGLAENFQILDSDDQQRLVKRVIRDLGLDEQRWPAKQAQWFINGQKDEG
                     MRPKNIQPGGDLFLATMLKIYEAYEAACARAGVIDFAELLLRALDLWRDKPDLLAHYQ
                     KRFRHILVDEFQDTNAVQYAWLRLLAKGGESLMVVGDDDQSIYGWRG"
     gene            1068..>2415
                     /locus_tag="VLF16_14580"
     CDS             1068..>2415
                     /locus_tag="VLF16_14580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018927369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HSX72154.1"
                     /translation="MTQSSRGPSAGVAVEETRAIHQQFATEIAVERTRLLYQGSQVPT
                     LFMLLGGLACAGLLWQPQPSLLLAGWLVWVVLLAVLRLIQMTAFKSALPSRQANPHWR
                     RVFLVGAGLSGLTLAFAAIFLVPADRFLLQALVYGLIAAAILSASVAYAVSRSAFLVF
                     ALPCLLPSIGYLLLSDSASQQGWGALGLLMLLSLCVVAWQVNRLVERNLLRRFQNQAL
                     IERLEHARESAEGLNQELAREVEQRRRAERELRKAHGELEIRVTQRTLELDDATHALG
                     KSEARLGLALEASELGLWDWNLKTDEVYHSHLQSIFGISQDEVKGVLSHLKPRLHPDD
                     LPLLRRALVDHLKGRTDGYCVEYRVRHADGRWRWVEDRGRAVERDERGQVLRMLGTRR
                     DVTERKRLDEEHRLAATVFEAASEGIVILDADYLVLSVNQAFSEVTGYRKDEVLGRS"
BASE COUNT          368 a          788 c          861 g          398 t
ORIGIN      
        1 cgccgcgcca gccgtagatc gactgatcgt cgtcgccgac caccatcagg ctctcgccac
       61 ccttggccag caggcgcagc caggcgtact gcacggcgtt ggtgtcctgg aactcgtcca
      121 ccaggatgtg gcggaagcgc ttctggtagt gggccagcag gtcgggtttg tcgcgccaca
      181 ggtcgagggc gcgcagcagc agctcggcga agtcgatgac cccggcgcgg gcgcaggcgg
      241 cctcgtaggc ctcgtagatc ttcagcatgg tggcgaggaa caggtcgccg ccgggctgga
      301 tgttcttcgg ccgcatgccc tcgtctttct gcccgttgat gaaccactgg gcctgcttgg
      361 ccggccagcg ctgttcgtcc aggccgaggt cgcggatcac ccgtttgacc aggcgctgct
      421 ggtcgtcgga gtcgaggatc tggaagttct cggccaggcc ggcctcgcgc cagtgggcgc
      481 ggagcaggcg gtgggccagg ccgtggaagg tgccgaccca catgccgctg gggctcaggc
      541 cgagcatctg ttcgatgcgc tggcgcatct cggccgcggc cttgttggtg aaggtcaccg
      601 acaggatcga atacggcgag gcgttgagaa actggatcag aaacgcgatg cggtgcacca
      661 gcacgcgggt cttgcccgag ccggcgccgg ccagcaccag ttggcggccg aggggcgcgg
      721 ccacggcctg gcactgcgca tcgttgaggg aagcgaggag aagttcgggg tcgagacggg
      781 cgggatcgtt ttgcatcgcg gcattctacg ggcggggtag ggcagcggca aagcgcgggc
      841 ggacgggcgc gagtccgaca tgcctggagc ccttgtgcat cgcagcgtcc gcgcgatctc
      901 gagggggctc ggcggggcag gcgaggcgcg gtgcggcgct ttcagtgaac aaatgttcgc
      961 cactcatcga ggcgagctgg taaaaagcca gcatcggact tgggcagccc ctctagctcg
     1021 ggtatgctcg cggaaagtca ggcattccca ttacaagaaa aacgcctatg acccagtctt
     1081 ccagggggcc ctccgccggc gtggcggtgg aggaaacccg cgccatacac cagcagttcg
     1141 ccaccgagat cgcggtggag cggacgcgtc tgctgtacca gggctcccag gtcccgaccc
     1201 tgttcatgct gctcggtggc ctggcctgcg ccggcctgct ctggcaaccg cagccaagcc
     1261 tgctgctggc cggctggctg gtgtgggtgg tgctgctggc ggtgctgcgg ttgatccaga
     1321 tgaccgcgtt caagagcgcg ctgccctcgc gccaggcgaa tccgcactgg cgccgcgtgt
     1381 tcctggtcgg cgccggattg tctggcctga ctctcgcctt cgccgcgatc ttcctggtgc
     1441 cggccgaccg tttcctgttg caggcgctgg tctacggcct gatcgccgcg gcgattctct
     1501 ccgccagcgt ggcctacgcg gtcagccgct cggcctttct cgtcttcgcc ctgccgtgcc
     1561 tgctgccatc catcggctac ctgctgctca gcgacagcgc cagccagcag ggttggggcg
     1621 cgctcggcct tttgatgctg ctgagcctct gcgtggtggc ctggcaggtc aaccggttgg
     1681 tcgagcgcaa cctgctgcgg cgcttccaga atcaggcgct gattgagcgc ctggagcacg
     1741 cccgcgagag tgccgagggc ctaaatcagg aactggcccg cgaggtggaa cagcgccgcc
     1801 gcgccgaacg cgagctgcgc aaggcccacg gcgaactgga gatccgcgtg acccagcgca
     1861 ccctggagct ggacgacgcc acccacgccc tgggcaagag cgaggcgcgc ctgggcctgg
     1921 ctctggaggc cagcgaactg ggcctgtggg actggaacct gaagaccgac gaggtctacc
     1981 acagccacct gcagagcatc ttcggcatca gccaggacga ggtgaagggc gtgctcagcc
     2041 acctcaagcc gcgcctgcat ccggacgatc tgccgctgct gcgccgggcc ctggtcgacc
     2101 acctcaaggg ccgcaccgat ggctactgcg tggagtaccg cgtgcgccat gccgacgggc
     2161 gctggcgctg ggtcgaggac cgcggccgtg cggtcgagcg cgacgagcgc ggccaggtgc
     2221 tgcgcatgct cggcacccgt cgcgacgtga ccgagcgcaa gcgcctggac gaggaacatc
     2281 gcctggccgc cacggtgttc gaggcggcca gcgagggcat cgtcattctc gatgccgact
     2341 atctcgtgct ctcggtgaac caggccttca gcgaagtcac cggctatcgc aaggacgagg
     2401 tgctcgggcg tagcg
//
LOCUS       DATIHC010000872         2611 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_24818, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000872 DATIHC010000000
VERSION     DATIHC010000872.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24818"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..468)
                     /locus_tag="VLF16_14585"
     CDS             complement(<1..468)
                     /locus_tag="VLF16_14585"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251802.1"
                     /note="catalyzes the carboxylation of acetyl-CoA to
                     malonyl-CoA; forms a tetramer of AccA2D2 subunits; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit beta"
                     /protein_id="HSX72155.1"
                     /translation="MSNWLTEKLIPSIMRSEVKKSSVPEGLWHKCPSCDAVLYRPELE
                     KTLDVCPKCNHHMRIDARARLDLFLDEEGREELGAELEPVDRLKFRDSKKYKDRLASA
                     QKETGEKDALVSMSGTLQGMPIVACAFEFSFMGGSMGAIVGERFVRAANVALEK"
     gene            complement(603..1223)
                     /locus_tag="VLF16_14590"
     CDS             complement(603..1223)
                     /locus_tag="VLF16_14590"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007913453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004640 - phosphoribosylanthranilate
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HSX72156.1"
                     /translation="MTAVRVKICGITRVEDALVAAAAGADAIGLVFYARSPRAVGIEQ
                     ARAIIAALPPFVTTVGLFVDADRAELDRILAQVPLDLLQFHGDEPAALCEGFGRPYIK
                     ALRVKAGDDIAAQVNRYPGASGVLLDTYVEGVPGGTGEAFDWSLVPENLAKPVILAGG
                     LHAGNVAEAVARVRPYAVDVSGGVEASKGIKDAEKIGAFVRAARGG"
     gene            complement(1280..2137)
                     /gene="truA"
                     /locus_tag="VLF16_14595"
     CDS             complement(1280..2137)
                     /gene="truA"
                     /locus_tag="VLF16_14595"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HSX72157.1"
                     /translation="MFEAIPTGAAEMAAPGVFRIALGVEYKGTRYRGWQRQDSGVPTV
                     QESLEKALSQVAAEPIGLMCAGRTDAGVHASGQVVHFDTHAERPLKAWVMGANANLPA
                     DISVTWAKVMQANFHSRFKACARRYRYVIYSDPIRPAHLAEEVTWNHRPLEVARMREA
                     ARHLVGTHDFTSFRAVQCQAKSPVKTVHHLEVIEHGRFIVIDVRANAFLHHMVRNFAG
                     VLMTIGAGEREPGWVGEVLEARDRRAGGVTAHPYGLYLVQVEYPQEFELPERYLGPHF
                     LSALPQSFG"
     gene            complement(2141..>2611)
                     /locus_tag="VLF16_14600"
     CDS             complement(2141..>2611)
                     /locus_tag="VLF16_14600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003119743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FimV/HubP family polar landmark protein"
                     /protein_id="HSX72158.1"
                     /translation="DLDSETKPSETAAEDDFLLSLDDEPVAPLASGVETDPDMPADFD
                     LSLADETPATPAEDSFAAQLDEVSAELDELSGDLADEPVVQPDTGSSTAGLDMDDDFD
                     FLSGTDETATKLDLARAYIDMGDSEGARDILDEVIAEGSEGQQQEARDLISKLS"
BASE COUNT          464 a          884 c          804 g          459 t
ORIGIN      
        1 cttctccagg gcaacgttgg cggcacgcac gaagcgctcg ccaacgatgg cgcccatgga
       61 gccgcccatg aagctgaact cgaaggcaca ggccacgatg ggcatgccct gcagcgtacc
      121 gctcatggat accagcgcat ccttctcgcc ggtctccttc tgggcgctgg cgaggcgatc
      181 cttgtacttc ttgctgtcac ggaatttcag gcggtccacc ggctccagct cggcacccag
      241 ctcctcacga ccttcttcat ccaggaacag atcgagacgg gcacgcgcgt cgatgcgcat
      301 gtggtggttg cacttggggc agacatcgag agtcttttcc agctccgggc gatagagcac
      361 ggcatcgcag gacgggcact tgtgccagag tccttcgggc accgagctct tcttgacctc
      421 ggaacgcatg atcgagggga tcagtttttc tgtcagccag ttgctcatgc ttactctccg
      481 tagctgttgc ggcgggccgt tcggcgaccc gggcgaatct ggttcaggcc gaggctggct
      541 gtcgccaccc tccggcaggg gcacaatggc ttatggacgg caggcatcca gccgccgtca
      601 catcaaccgc cacgtgccgc gcgaacgaac gcaccgatct tctccgcatc cttgatgccc
      661 ttgctcgcct ccaccccgcc gctcacatcc accgcgtagg ggcgcacccg tgctaccgcc
      721 tctgcgacgt tgcccgcgtg cagaccgccg gccaggatca cgggcttggc cagattctcg
      781 ggaaccaggg accagtcgaa ggcctcgccg gttccgccgg gcacgccctc gacataggtg
      841 tccagcagca cgccgctggc acccggatag cgattcacct gggccgcaat gtcgtcaccg
      901 gccttgaccc gcagcgcctt gatatagggg cggccgaagc cctcgcacag cgctgccggc
      961 tcgtcgccgt ggaactgcag caggtccagc ggcacctgag cgaggatacg atccagctcg
     1021 gcgcgatcgg catcgacgaa caaacccacg gtcgtcacga acggcggcaa cgccgcgatg
     1081 atcgcccgcg cctgctcgat gcctaccgcc cttgggctcc tggcatagaa caccaggcca
     1141 atggcgtcgg caccggctgc agccgcgacc agagcatcct cgacccgggt gatcccgcag
     1201 attttgacgc gaacggctgt caacgtgacg gcaccttctg caaaagaaaa atcgatggta
     1261 gcaaagccga gaagcagttt cagccgaagc tttgcggcag cgccgagagg aaatgcggcc
     1321 ccagatagcg ctccggcagc tcgaactcct gcggatactc cacctgcacc aagtacaggc
     1381 cgtagggatg agcggtgaca ccgccagccc ggcggtcccg tgcctcgagc acttcgccca
     1441 cccaaccggg ctcgcgctca ccggcgccga tggtcatcag cactccggcg aagttgcgca
     1501 ccatgtgatg caggaaggca ttggcgcgca cgtcgatgac gatgaagcgg ccgtgctcga
     1561 tcacctccag gtgatgcacc gtcttcaccg gcgacttggc ctggcactgc accgcgcgga
     1621 acgaggtgaa atcatgggtg cccaccaaat gcctggccgc ctcgcgcatg cgcgccacct
     1681 ccagcgggcg atggttccag gtgacctcct cggccagatg cgccgggcga atcgggtcgc
     1741 tgtagatgac gtagcgatag cgccgggcgc aggctttgaa gcgggagtgg aaattcgcct
     1801 gcatgacctt ggcccaggta acgctgatat ctgcaggcag attggcgttg gcacccatca
     1861 cccaggcctt gagcgggcgc tcggcgtgag tatcgaaatg caccacctgc ccgctggcgt
     1921 gcacgccggc atcggtgcgc cccgcgcaca tcaggccgat cggctcggcg gccacctgcg
     1981 acaaagcctt ttccagcgac tcctgcaccg taggcacccc actgtcctgg cgctgccagc
     2041 cacggtaacg agtgcctttg tactccacgc caagtgcgat tctgaaaacg ccaggggcgg
     2101 ccatttcggc cgcccctgtt ggtatagctt caaacatgga tcagctcagt ttggagatca
     2161 gatcgcgagc ttcctgctgc tgaccttcgc taccctcggc aatcacttca tcgaggatgt
     2221 cgcgggcgcc ttcgctgtcg cccatgtcga tataggcacg ggccaggtcc agcttggtag
     2281 cggtctcgtc ggtacccgag aggaagtcga agtcgtcgtc catgtccagg cctgcggtgg
     2341 aagagccggt atccggctgt acgacaggct cgtcggccag gtcgccgctc agctcgtcca
     2401 gctcagcaga gacttcgtcc agctgcgcgg cgaagctgtc ttcggccggc gttgcgggag
     2461 tctcgtcagc cagcgacagg tcgaagtccg ccggcatgtc cggatcggtc tcgacgcccg
     2521 acgccaacgg agcgacgggt tcgtcgtcca ggctcagcag gaaatcgtct tccgcggcgg
     2581 tctcgctcgg cttggtctcg ctgtcgaggt c
//
LOCUS       DATIHC010000873         2969 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_38733, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000873 DATIHC010000000
VERSION     DATIHC010000873.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2969)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2969)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2969
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38733"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            2..133
                     /locus_tag="VLF16_14605"
     CDS             2..133
                     /locus_tag="VLF16_14605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017901733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rubredoxin"
                     /protein_id="HSX72159.1"
                     /translation="MYDEARGWPDDGIPAGTPWAEVPEDWLCPDCGVSKADFDMQEL"
     gene            189..265
                     /locus_tag="VLF16_14610"
     tRNA            189..265
                     /locus_tag="VLF16_14610"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:223..225,aa:Arg,seq:ccg)
     gene            complement(310..1176)
                     /locus_tag="VLF16_14615"
     CDS             complement(310..1176)
                     /locus_tag="VLF16_14615"
                     /inference="COORDINATES: protein motif:HMM:NF014066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HSX72160.1"
                     /translation="MKRLKCLPLICLLLSSWTLADSGVWRVEKGSERILIAGTIHMLR
                     PADMPLPPEYRQALESAERVAFETDPRQVARPEFAMEMNRRFALPEGESLRARLSPQS
                     WQRLERYAQANQVPLAHLERFTPGYASVMLSSLQMLREGRTLFLDLALAEQARAAGKT
                     IAALETPGDQLRAIDAFAGVEPDVLLADTLDAIEEQPPLADQMQDALLAGDLETLGEW
                     ASEMQALMPAAYDGMLVERNRNWLPQIRRMAGEPQRTLVLVGALHLAGEHGLLHELER
                     AGYRIEHYRPQP"
     gene            complement(1287..>2969)
                     /locus_tag="VLF16_14620"
     CDS             complement(1287..>2969)
                     /locus_tag="VLF16_14620"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HSX72161.1"
                     /translation="CGEWFRLWRPLAAMLKRLPGGQTPLQAHVRACQWFAGRGAVREA
                     VEHALWAEQPDVAANYLQRYGQDQLLIGHSVAQFLHWRDELPASLFSSTPRLIMLQAW
                     ALIICARLDEVEACLVDLARFLPQPDARRQQQLVAQYQAVQGVLQRQRGQASARQHCL
                     EALPVLHESAWSQHILCHQALTQQAMAELDLVSAQQYSHEGLRLARLRGNVLFEALLS
                     VDHIHLLAMLGERERALDLAEQCLQLLQGANLRGPVHARLLLLRGTLLASHGELELAR
                     TVLQTGVQEAESCEDAYLLFGYLGLAELAAAQGEHEHGEQLLRRAERKMQWLHVPEVR
                     YREMLQLAQGNLWLRQGDARQARQAFLRVSRRLEEERLLAPSGFYDLLPRARLCLAQA
                     DLVLGEAAAVLPALQQLHDDCRHSGHHSLATQTRLVQAEALHLAGRDEEADALLRIAV
                     GEAQRQQQALALLNLQQRQPDWLKGHPAWPQGLLQQTAEGAAAVGESLLSKRELAVLS
                     LIAQGHSNQQIAEQLYISLHTVKTHARRINVKLGVQRRTQAVARAKAEGWLG"
BASE COUNT          430 a          999 c         1082 g          458 t
ORIGIN      
        1 gatctacgac gaggccaggg gctggccgga cgacggcatc cccgccggca cgccctgggc
       61 cgaggtcccc gaggactggc tgtgcccgga ctgcggcgtc agcaaggccg acttcgacat
      121 gcaggagctc tgaccgacca cccgcatgga cgcccgcgag gcggatgcgt atgattgcgc
      181 cccgcaacgc atccgtagct cagctggata gagtactgcc ctccgaaggc aggggtcgtg
      241 ggttcgaatc ccgccggatg cgccatacaa aaaagccctg ggcagatgcc tggggctttt
      301 ttattgggct cagggttgtg ggcggtagtg ttcgatgcgg tagcccgcgc gctccagctc
      361 gtggagcagc ccatgctcgc cggcgaggtg cagggcgccg accagcacca gcgtccgctg
      421 gggttcgccg gccatgcgac ggatctgcgg cagccaattg cggttacgct cgaccagcat
      481 gccgtcatag gccgcgggca tgagcgcctg catctcgctc gcccactcac cgagcgtctc
      541 gaggtcgccg gcgagcaacg cgtcctgcat ctgatccgcc agtggcggct gttcctcgat
      601 ggcgtcgagg gtgtcggcca gcagcacgtc cggctccacg cctgcaaagg catcaatggc
      661 gcgcagctgg tctccggggg tttccagcgc ggcgatggtc ttgccggccg cgcgcgcctg
      721 ttccgcgagc gccaggtcga gaaacagggt gcggccctcg cgcagcatct gcagcgagct
      781 cagcatcacg gaggcgtagc cgggagtgaa gcgctccagg tgggccagcg gaacctggtt
      841 ggcctgggca taccgctcca ggcgttgcca ggactgcggt gagagccgtg cccgcaggga
      901 ctcgccctcg ggcagggcga aacgccggtt catctccatg gcgaattccg gccgggcgac
      961 ctgccgggga tcggtctcga aggcgactcg ctcggcgctt tcgagcgcct ggcggtattc
     1021 cggcggcagc ggcatgtcgg cggggcgcag catgtggatg gtgccggcga tcaggatgcg
     1081 ttccgaaccc ttctcgacgc gccagacccc cgagtcggcg agcgtccagg aagacagcag
     1141 caggcagatc aggggcaggc atttcaggcg tttcatgact cgtccttgag tgagtggcga
     1201 gtcggcatgc taatccacgg tcacgccaat gcaagcgtca ggtcgctctc tcgcccgtgc
     1261 ggcgagaaag cgacctgacg ggtacttcac cccagccatc cctccgcctt ggcccgggcc
     1321 acggcctggg tgcggcgctg tacgccgagc ttgacgttga tgcgccgcgc gtgggttttc
     1381 accgtgtgca gggagatgta cagctgctcg gcgatctgct ggttggagtg gccctgggcg
     1441 atcaggctca gcacggccag ctcgcgcttg ctcagcagcg actcgccgac agcggcggcg
     1501 ccttcggcgg tctgctgcag caggccttgc ggccaggccg ggtggccctt gagccagtcc
     1561 ggttgacgct gctgcaggtt gagcaaggcc agggcctgct gctggcgctg cgcttcgccg
     1621 acggcaatgc gcagcagggc gtcggcctct tcgtcgcgcc cggccaggtg cagggcttcg
     1681 gcctggacca ggcgggtctg ggtggccagg ctgtggtggc cgctgtgccg gcagtcgtca
     1741 tgcagttgct gcagggcggg cagcacggct gcggcctcgc cgagaaccag gtcggcctgg
     1801 gccaggcaca ggcgcgcgcg cggcagcagg tcgtagaagc cggaaggcgc cagcaggcgc
     1861 tcttcctcca ggcggcggga cactcgcagg aaggcctggc gggcctgccg cgcatcgccc
     1921 tggcgcagcc agaggttgcc ctgggccagc tgcagcattt cccggtagcg cacttccggc
     1981 acgtgcagcc actgcatctt gcgttcggcg cggcgcagca gctgctcgcc gtgctcgtgt
     2041 tcgccctggg cggccgccag ttcggccagg ccgaggtagc cgaacagcag gtaggcgtcc
     2101 tcgcagctct cggcctcctg cacgcccgtc tgcagaacgg tccgcgccag ttccagttcg
     2161 ccgtggctgg ccagcagggt gccgcgcagc agcagcaggc gcgcgtgcac cgggccgcgc
     2221 aggttggcgc cctgcagcag ctgcaggcac tgctcggcca ggtccagtgc gcgctcgcgc
     2281 tcgccgagca tggccagcag gtggatgtgg tcgacgctga gcagcgcctc gaacagcaca
     2341 ttgccgcgca ggcgcgccag gcgcaggccc tcgtggctgt attgctgggc gctgaccaga
     2401 tcgagctcgg ccatcgcctg ctgggtcagc gcctggtggc agaggatatg ttgggaccag
     2461 gccgattcgt gcagcaccgg cagggcctcc aggcagtgct ggcgggcgct ggcctggccg
     2521 cgctggcgct gcagcacgcc ctgcaccgcc tggtactggg cgaccagctg ctgctgacgg
     2581 cgcgcatcgg gctgcggcag gaagcgcgcg aggtcgacga ggcaggcctc cacttcgtcg
     2641 aggcgggcgc agatgatcag cgcccaggcc tgcagcatga tcagccgcgg cgtgctgctg
     2701 aacagactgg ccggtagctc gtcgcgccaa tgcaggaact gggcgacgct gtggccgatc
     2761 agcaactggt cctggccata gcgctgcagg tagttggcgg cgacgtccgg ctgctcggcc
     2821 cacagcgcgt gctcgaccgc ctcgcgcacc gcgccgcgcc cggcgaacca ctgacaggcg
     2881 cgcacgtgag cctgcagcgg cgtctggccg ccgggcaggc gcttgagcat ggcggccagc
     2941 ggccgccaca ggcggaacca ctcgccgca
//
LOCUS       DATIHC010000874         1895 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_15570, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000874 DATIHC010000000
VERSION     DATIHC010000874.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1895
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15570"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1895
                     /locus_tag="VLF16_14625"
     CDS             <1..>1895
                     /locus_tag="VLF16_14625"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HSX72162.1"
                     /translation="EVLGVERVGRQDHFFELGGDSIVALKVVSRIRQQGLQLPLKALF
                     EQSRLADCAAALQREAADAPVLRALPRGGDLPLSHAQQRLWFLNRLDPSNGAYHMPAG
                     LDLQGRLDRQALQAAFDQLEARHEALRTRFVEVNGEARQRILPAQGQRVDWVDLRELA
                     ANEREAEARDYAQKLLKRPFNLAGEPLLRVAVLRLGDQEYRLLLIQHHIVSDGWSMQR
                     FIGEFSAAYAAFAEGHTAQFSALPLQYADYAQWQRDWLKSSEATRQLDYWKARLGEHQ
                     PLLELPLDHPRPAQGARQGMRWRFELSPQLTAQLRALAQREGSTLFSLLLAAWQTLLH
                     RYSGQEDIRVGVPVAGRSLAEMDGVLGCFINTLVLRGEPAGLKPFRELLGELAQASRD
                     ALANQELPFDQLVEALQPTRNLSHHPLFQVAFNHQQVDFSALGNLPGLRVQPHDPGAA
                     GAQFDLALDTEEAADGSLSGFVSYAAELFEARTIARLARHFVRLLEGICADPSQPIGL
                     LPLLEEDEQAQLVAWNDTAKDYGPLVNMSERISQQAARTPQAPALVFGEQTLSYVELE
                     QRINQLANRLRRLGVQRGSLVGISLERSLELVIGLHAIVRAGGAYVPLDPEYPLERLA
                     YLLEDSGV"
BASE COUNT          299 a          654 c          640 g          302 t
ORIGIN      
        1 gaagtgctgg gcgtggagcg agtagggcgc caggaccatt tcttcgagct gggcggcgac
       61 tccatcgtcg cgctcaaggt agtcagccgc attcgccagc agggcctgca actgccgctc
      121 aaggcgctgt tcgaacaaag ccgtctggcc gattgcgccg cggccctgca acgcgaagcc
      181 gccgatgcgc cggtgctgcg tgcattgccg cgcggcggcg acctgccgct gtcacatgcc
      241 cagcagcgcc tgtggttcct caaccgcctg gacccgagca acggtgccta ccatatgccg
      301 gccggcctcg atctgcaggg ccgcctggat cgccaggcgc tgcaggccgc cttcgaccag
      361 ctggaagcgc gtcacgaggc gctgcgtacc cgcttcgtcg aggtcaacgg cgaggcgcgc
      421 cagcgcatcc tgccggccca gggccagcgt gtcgactggg tcgacctgcg tgagctggct
      481 gccaacgagc gcgaagccga ggcccgagat tacgcgcaga agctgctcaa gcggccgttc
      541 aacctggccg gcgaaccgct gctgcgggta gccgtgctgc gcctgggcga ccaggagtac
      601 cgtctgttgc tgatccagca ccacatcgtc tccgatggct ggtcgatgca gcgctttatc
      661 ggcgagttct ctgcggccta tgccgccttc gccgagggcc atacggcgca gttcagcgcc
      721 ttgccgctgc aatacgccga ctatgcccag tggcagcgcg actggctgaa atctagcgag
      781 gccacgcgcc aactggacta ctggaaggcc cgcctggggg aacaccagcc gctgctggaa
      841 ctgccgctgg atcacccgcg cccggctcag ggcgcgcgtc agggcatgcg ctggcgtttc
      901 gagctgtcgc cgcagctcac cgcgcagctg cgcgccctgg cccagcgcga gggcagcacg
      961 ctgttcagcc tgctgctggc ggcctggcag acattgctgc atcgctacag cggccaggaa
     1021 gatatccgtg tcggcgtgcc ggtggccggg cgcagcctgg cggaaatgga cggcgtgctc
     1081 ggttgcttca tcaacaccct ggtgctgcgc ggcgagccgg ctgggctgaa acccttccgc
     1141 gagctgctcg gcgaactggc ccaggccagc cgtgatgccc tggccaacca ggaattgccg
     1201 ttcgaccagt tggtggaagc gctgcaaccg acgcgcaacc tgagtcatca cccgctgttc
     1261 caagtggcgt tcaaccacca gcaggtagat ttcagcgccc tcggcaacct gccgggcctg
     1321 cgcgtgcaac cgcatgatcc gggcgccgcc ggtgcccagt tcgatctggc gctggacacc
     1381 gaggaagcgg cagacggcag cctcagcggc ttcgtcagct acgccgccga gctgttcgag
     1441 gcgcgcacca ttgcccgcct ggcgcggcat ttcgtgcgcc tgctggaagg catctgcgcc
     1501 gatccgagcc agcccatcgg cctgctgccg ttgctggaag aggacgagca ggctcagctg
     1561 gttgcctgga acgacacggc caaggattac ggcccgctgg tcaacatgag cgaacgcatc
     1621 agccaacagg cggcgcgcac gccgcaggcg ccggccctgg tgttcggcga gcagaccctg
     1681 agctacgtcg agctggagca acgcatcaac cagctggcca accgcctgcg ccgcctcggc
     1741 gtgcagcgtg gcagcctggt cggcatcagc ctggagcgct cgctggagct ggtgatcggc
     1801 ctgcacgcca tcgtccgcgc cggtggtgcc tatgtgccgc tcgacccgga atacccgttg
     1861 gagcgcctgg cctatctgct ggaggattcc ggggt
//
LOCUS       DATIHC010000875         2165 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17876, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000875 DATIHC010000000
VERSION     DATIHC010000875.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2165)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2165)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2165
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17876"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(236..1009)
                     /locus_tag="VLF16_14630"
     CDS             complement(236..1009)
                     /locus_tag="VLF16_14630"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011531538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HSX72163.1"
                     /translation="MRFAFLALTALLLAGCAGGLSIDDSLRSQGQSSRVQYIVLHYTS
                     TDLARSLALLTRGEVSAHYLIGDGSAKVYRLVDEDRRAWHAGVSEWQGRTWLNASSIG
                     IELVNQGYYDGPTGRYWQPYGEAQIQTLIALLKDLVERHDLPIDSIIGHSDVAPQRKV
                     DPGPLFPWKRLADAGLIRWPDAATVAREQARFAAVPADVFWFQQQLQQLGYTVPHTGV
                     LDQSTRNVLIAFQMKYRPARYDGEPDAESAAILQVLNGR"
     gene            complement(1033..1626)
                     /locus_tag="VLF16_14635"
     CDS             complement(1033..1626)
                     /locus_tag="VLF16_14635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HSX72164.1"
                     /translation="MDIFAVAVLVFLVTDPFGNIAIYLAALKNVAPERRMRVALRELL
                     LALALLMLFLTFGDKILSGLGLSRESTAIAGGIILFVIAMRLIFPRPEGVLGDLPDGE
                     PLLVPLATPAVAGPSALAVLLTLRSTYDGPIWELYLAVGLAWLATASILLQASWLQKF
                     LGPRGLTAVERLTGMLLIMLSVDMLLDNLQSILHITP"
     gene            1802..>2165
                     /locus_tag="VLF16_14640"
     CDS             1802..>2165
                     /locus_tag="VLF16_14640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HSX72165.1"
                     /translation="MRRVLLWFKQDLRLDDHPALQAAMVAERLLPLYVLDPALLLPGP
                     LGSRRLGVHRARFLLESLVALDGELRQRGSGLRVVQGRAEEWIPRLVEELGLDAVLTL
                     DEIVPDERARLDAVAHALG"
BASE COUNT          343 a          707 c          813 g          302 t
ORIGIN      
        1 ggcccgctgg gcctgctgat tggccagcca cagaccggcg gcagcgaaca gcagcaacgc
       61 gaggcaaccg gccaatagcg ccgccggcca agggcggaaa atcaggcggc gcaggctgag
      121 cggcatgggg agggctccgg acgggaccct tcaggtatag cccagcggca ggcgtcggcg
      181 ccgcgcttcg ctcggtgcgc agcgaaatac cggagcgggt cgacggacgg ccgcctcagc
      241 gcccgttgag cacctggagg atggccgcgc tctcggcatc cggctcgccg tcgtaacggg
      301 ccgggcggta cttcatctgg aaggcgatca gcacgttgcg ggtcgactga tccagcacgc
      361 cggtatgcgg caccgtgtag ccgagctgct gcaactgctg ctggaaccag aagacatccg
      421 ccggcacggc ggcgaagcgc gcctgctcgc gggccacggt ggcggcgtcc ggccagcgga
      481 tcaggccggc gtcggccagg cgcttccagg ggaacagcgg gcccgggtcg accttgcgct
      541 gcggcgcgac gtcgctgtga ccgatgatgc tgtcgatcgg caggtcgtgg cgctcgacca
      601 ggtccttgag cagggcgatc agcgtctgga tctgcgcctc gccgtagggc tgccagtaac
      661 gcccggtggg tccgtcgtag tagccctggt tgaccagctc gatgccgatg ctgctggcgt
      721 tgagccaggt gcggccctgc cactcgctga cgccggcgtg ccaggcgcgg cggtcctcgt
      781 cgaccaggcg gtagaccttc gccgagccat cgccgatcag gtagtgggcg ctgacctcgc
      841 cgcgggtcag cagggccagc gagcgcgcaa ggtcggtcga ggtgtagtgc aggacgatgt
      901 actgcacgcg gctgctttgg ccctgcgagc gcaggctgtc gtcgatgctc aggccaccgg
      961 cgcagccggc gaggagcagg gcggtgaggg cgaggaaggc gaatctcatg ggcgaggcgg
     1021 gcaccgttcg gctcagggag tgatgtgcag gatgctctgc aggttgtcga gcagcatgtc
     1081 gacgctgagc atgatcagca acatgccggt cagccgctcc acggcggtga gaccgcgcgg
     1141 gccgaggaat ttctgcagcc acgaggcctg cagcaggatg ctggcggtgg ccagccaggc
     1201 caggccgacg gccaggtaca gctcccagat cggtccgtcg taggtgctgc gcagggtcag
     1261 caggacggcc agggccgacg gcccggccac cgccggggtg gccagcggca ccagcagcgg
     1321 ctcgccgtcg ggcaggtcgc ccaggacgcc ttccgggcgc gggaagatca ggcgcatggc
     1381 gatgacgaag aggatgatgc cgccggcgat ggcggtggat tcgcgcgaca ggcccaggcc
     1441 gctgaggatc ttgtcgccga aggtgaggaa cagcatcagc agcgccaggg ccagcaacag
     1501 ttcgcgcagg gccacgcgca tgcgccgttc gggcgcgacg ttcttcagcg cggcgaggta
     1561 gatggcgatg ttgccgaagg gatcggtgac cagaaagacc aggacggcga cggcgaagat
     1621 atccatgtgt actccttgca gatcggcaca gtctaccggc cgacacggcg ccggcaaaac
     1681 gagagtcccg tcacatcgcg cgcggcgtgc gccgccgcac aggcgaagcc gggggacgaa
     1741 cggcggcccg ctgcggcccc ggcggcctat cgtcaatgca ccgctcccga ggaaacccgc
     1801 catgcgccgt gtgctgctct ggttcaagca ggatctgcgc ctcgacgacc acccggccct
     1861 gcaggccgcc atggtcgccg aacgtctgct gccgctgtac gtcctcgatc ccgccttgtt
     1921 gctccccggc ccgctgggca gccgccgcct cggcgtgcat cgcgcgcgtt tcctgctgga
     1981 aagcctggtc gccctcgacg gcgagctgcg ccagcgcggc tcaggcctgc gggtggtaca
     2041 gggccgggcc gaagagtgga ttccgcgcct ggtcgaggag cttggcctgg acgccgtgct
     2101 gacgctggac gagatcgtgc ccgacgagcg cgcccggctc gatgcggtgg cgcatgcact
     2161 ggggc
//
LOCUS       DATIHC010000876         2954 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_22523, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000876 DATIHC010000000
VERSION     DATIHC010000876.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2954)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2954)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2954
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22523"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1240
                     /locus_tag="VLF16_14645"
     CDS             <1..1240
                     /locus_tag="VLF16_14645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017139510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HSX72166.1"
                     /translation="VQAIVRWANQHKVALVPSGGRTGLSAAAVAANGEVVVAFDYMNQ
                     VLAFNEYDRTVVCQPGVVTKQLQQYAEDKGLYYPVDFASSGSSQLGGNIGTNAGGIKV
                     IRYGMTRNWVAGMKVVTGTGELLELNRDLIKNATGYDMRQLFIGAEGTLGFVVEATMR
                     LERAPKNLTAMVLGTPDFDSIMPVLHAFQNKVDLTAFEFFSDKALAKIMARGDVPPAF
                     ETDCPFYALLEFEATTEEVANQALETFEHCVEQGWVLDGVMSQSQQQLENLWKLREYI
                     SETISHWTPYKNDISVTVGQVPAFLHDIDRIVEANYPDFEVVWFGHIGDGNLHLNILK
                     PENLSKDEFFAKCAVVNQWVFETVQKYNGSISAEHGVGMTKRDYLHYSRSEAEIGYMK
                     AIKQVFDPNGIMNPGKIFPL"
     gene            1329..1994
                     /locus_tag="VLF16_14650"
     CDS             1329..1994
                     /locus_tag="VLF16_14650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HSX72167.1"
                     /translation="MSYQHQYIDGTPIHFPLGKVVCVGRNYAEHAKELNNPVPTEPLL
                     FIKPGSCTVPMDDGFAIPQDRGAVHFEAEIAVLIGKPLSKQPSEEEVRDAISGFAPAL
                     DLTLRDVQARLKEKGLPWELAKSFDGAYVLAPFVTADAVEDVRDIGIRLTIDGQVRQD
                     GNARDMLNPIIPLIQHIAAHFSLQPGDVVSTGTPAGVGPLGTGESLEIELVGLSRFAT
                     RVL"
     gene            2073..>2954
                     /locus_tag="VLF16_14655"
     CDS             2073..>2954
                     /locus_tag="VLF16_14655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003084355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SdiA-regulated domain-containing protein"
                     /protein_id="HSX72168.1"
                     /translation="MSLALSRRHTLCIALVATLALFVALIRYLHWDDQTLLWLKEQNM
                     PAADRAASIWLPGYQASIEGKPLRGLEEDETSDLAYSPLTGTLFTVTGKLPMLVELSR
                     TGEVLRRIALKGFSNPEGVAVLENGKIALTDERMRNLSIFELTPRTRELNLADADPYD
                     LGFPDAGNKGFEGIAWDPAQQRLLLGKEREPTAMFSLNSDGQHLRDQALQPLPSYGLG
                     MRNLSALSVDPRTGHILALSAQSRLLLELDEKGEPISFISLIGGSSGLEDRIPRAEGV
                     AMDEDGTIYMVSEPNLFY"
BASE COUNT          538 a         1057 c          913 g          446 t
ORIGIN      
        1 ggtgcaggcc atcgtgcgct gggccaacca gcataaggtc gctctggtcc cgtcgggcgg
       61 ccgtaccggc ctgtctgccg ccgccgtggc ggccaacggc gaggtggtgg tggccttcga
      121 ctacatgaac caggtcctcg cattcaatga gtacgaccgc accgtggtct gccagccggg
      181 cgtggtgacc aagcagctgc agcagtacgc cgaggacaag ggcctgtact acccggtgga
      241 cttcgcctcc agcggctcca gccagttggg cggcaacatc ggcaccaacg ccggcggcat
      301 caaggtgatc cgctacggca tgacccgcaa ctgggtggcc ggcatgaagg tggtcaccgg
      361 caccggcgag ttgctggaac tcaaccgcga cctgatcaag aacgccaccg gctacgacat
      421 gcgccagctg ttcatcggcg ccgaaggcac gctgggcttc gtcgtcgaag ccaccatgcg
      481 cctggagcgc gcgccgaaga acctcaccgc gatggtcctc ggcaccccgg acttcgactc
      541 gatcatgccg gtgctgcacg ccttccagaa caaggtcgac ctgaccgcct tcgagttctt
      601 ctccgacaag gccctggcca agatcatggc ccgcggcgac gtaccgccgg ccttcgagac
      661 cgactgcccg ttctatgccc tgctggaatt cgaggccacc accgaggaag tcgccaacca
      721 ggcgctggag accttcgagc actgcgtcga gcagggctgg gtgctggacg gcgtgatgag
      781 ccagagccag cagcagctgg aaaacctgtg gaaactgcgc gagtacatct ccgagaccat
      841 cagccactgg accccgtaca agaacgacat ctcggtcacc gtcggccagg tgccggcgtt
      901 cctgcacgac atcgaccgca tcgtcgaggc caactacccg gacttcgagg tggtgtggtt
      961 cggccatatc ggcgacggca acctgcacct gaacatcctc aagccggaga acctgagcaa
     1021 ggacgagttc ttcgccaagt gcgccgtggt caaccagtgg gtgttcgaga ccgtgcagaa
     1081 gtacaacggc tcgatctccg ccgaacacgg cgtgggcatg accaagcgcg actacctaca
     1141 ctacagccgc tccgaggccg agatcggcta catgaaggcg atcaagcagg tgttcgaccc
     1201 caacggcatc atgaacccgg gcaagatctt ccctctttga cttccgtcgg atggccggcg
     1261 ccgcgcgcac ctgccatcct gccgctccgc ggtggcagtc caccgtctcc ccgaccccag
     1321 gagcccgcat gagctaccag caccagtaca tcgacggcac cccgatccac ttcccgctgg
     1381 gcaaggtggt ctgcgtcggc cgcaactatg ccgagcatgc gaaggaactg aacaacccgg
     1441 tcccgaccga gccgctgctg ttcatcaagc ccggcagctg caccgtgccg atggatgacg
     1501 gcttcgccat cccgcaggac cgtggcgccg tgcacttcga ggcggagatc gccgtgctga
     1561 tcggcaagcc gctgtcgaag cagccgagcg aagaggaagt ccgcgacgcc atctccggct
     1621 tcgccccggc cctcgacctg accctgcgcg atgtgcaggc ccggctcaag gagaagggcc
     1681 tgccctggga actggccaag tccttcgacg gcgcctacgt gctggcgccc ttcgtcaccg
     1741 ccgatgcggt ggaagacgtg cgcgacatcg gcatccgcct gaccatcgac ggccaggtgc
     1801 gccaggacgg caacgcccgc gacatgctca acccgatcat cccgctgatc cagcacatcg
     1861 ccgcccactt cagcctgcag ccgggcgacg tggtgtccac cggcacgccg gccggtgtcg
     1921 gcccgctggg caccggcgag agcctggaaa tcgaactggt cggcctgtcg cgcttcgcca
     1981 cccgggtgct gtgaggcccg ggcgtcgggc cttcacggaa ctttcaccgc cgccgggcta
     2041 tctagagggc tcgctttaac cgagtcctcc ggatgtccct cgccctctcc cgccgccaca
     2101 cgctgtgcat cgcactggtg gccacccttg cactcttcgt cgcgctgatc cgctacctgc
     2161 actgggacga ccagaccctg ctgtggctca aggagcagaa catgccggcc gccgaccgcg
     2221 ccgccagcat ctggctgccg ggctaccagg ccagcatcga gggcaagccg ctgcgcggcc
     2281 tggaggaaga cgaaacctcc gacctggcct acagcccgct gaccggcacc ctgttcaccg
     2341 tgaccggcaa gctgccgatg ctggtcgagt tgagccgcac cggcgaggtg ctgcggcgca
     2401 tcgcgctcaa gggcttttcc aatcccgagg gcgtggcggt cctggagaac ggcaagatcg
     2461 ccctgaccga cgagcgcatg cgcaacctgt cgatcttcga gctgaccccg cggacccgcg
     2521 agctgaacct ggccgatgcc gatccctacg acctcggctt ccccgacgcc ggcaacaagg
     2581 gcttcgaggg catcgcctgg gacccggcgc aacagcgcct gctgctcggc aaggagcgcg
     2641 aacccacggc gatgttcagc ctgaacagcg acggccagca cctgcgcgac caggccctgc
     2701 aacccctgcc gagctacggc ctgggcatgc gcaatctctc cgcgctcagc gtcgacccgc
     2761 gcaccgggca catcctcgcc ctctccgccc agtcgcgcct gctgctggag ctggacgaga
     2821 agggcgagcc gatcagcttc atcagcctga tcggcggaag cagcggcctg gaagaccgca
     2881 tcccacgcgc cgaaggcgtg gccatggacg aggacggcac catctacatg gtcagcgagc
     2941 cgaacctgtt ctac
//
LOCUS       DATIHC010000877         3483 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_24838, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000877 DATIHC010000000
VERSION     DATIHC010000877.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3483)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3483)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3483
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24838"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..271)
                     /locus_tag="VLF16_14660"
     CDS             complement(<1..271)
                     /locus_tag="VLF16_14660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="alginate biosynthesis protein AlgK"
                     /protein_id="HSX72169.1"
                     /translation="MNGRLTAIALCVAIGGCAQLPDLELAERAKTGGDLQTAEENFRP
                     LAEMGYEEAEIGLADVLVKSPEPQRQAEGEAIYRRAAADSVQARIK"
     gene            complement(268..1482)
                     /locus_tag="VLF16_14665"
     CDS             complement(268..1482)
                     /locus_tag="VLF16_14665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003243111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HSX72170.1"
                     /translation="MSAVISPSINSNVVHEAEAQRQYARLKLPAKIRYYTPQGQELEA
                     PLVDLSVGGFSFAPGNHLLHEGQYCRGKLMFEVEGIGFAMDVEFQVRSLAGGKRAGCE
                     FHHLRQREQAALRYLISSFLSGELINVGDLISTLQRENFTKPRKGMDGAPTGIFGRMR
                     AAGLSLVIFLIGVAACTYVLYQLYDIYFITHADSAQVAVPGQQVSMPREGAVQALVKV
                     GDTVAKGAPVGTFSSNMMDVLKGVLPTEDLTPDNLQRLFGKTFQGTLTSPCDCRVTAQ
                     LIGDGQTAGKGAPVFLLSPVDAVATVEARFPYRSFDELQPGTAVDFVVAGETAERSGR
                     ITTLALQDGGLASDIRVMIQPDEPLATELAKRPVDVRIPPLGGLFDARLAAEGEMLAS
                     KLLPASDTAAGQ"
     gene            complement(1528..3009)
                     /locus_tag="VLF16_14670"
     CDS             complement(1528..3009)
                     /locus_tag="VLF16_14670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020298400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSX72171.1"
                     /translation="MESIQGSLRNSAGWLFYISMLGGMALLLPHSIFDPESTDFLLLL
                     GAVGIWRYSMGAIHYVRGLIFLYVVYPHYRRRARALGKAADPSHVYLLVTSFRIEAMT
                     TAAVYRSVIQEAIDCGYPSTVVCSIVELSDELLVKNLWNRLSPPEHVRLDIVRIPGTG
                     KRDGLAQGFRAISRHQPDDRAVVAVVDGDTVLSSGVIRQTAPYFTLFGNLGGLTTNEF
                     CEVRGGYVMQEWHKLRFAQRHINMCSMALSKRVLTLTGRMSVFRAEVVTDPGFIADVE
                     NDHLDHWRLGRFKFLTGDDKSSWYSLMRLGYDTFYVPDAAIHTVEHPPEKSFIKASRK
                     LMFRWYGNNLRQNSRALRLGVRRLGAFTSVVLLDQRVSMWTSLLGPSVAIIASIKYGF
                     AYLLIYLLWIGLTRLVLTLLLLASGHSIGPAYPLILYYNQIVGALVKVYVFFRLDQQS
                     WTRQKTKLNRDLASFQRWFNPWSSRAMTFSAGSVFVAALMWIV"
     gene            complement(3101..>3483)
                     /locus_tag="VLF16_14675"
     CDS             complement(3101..>3483)
                     /locus_tag="VLF16_14675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="UDP binding domain-containing protein"
                     /protein_id="HSX72172.1"
                     /translation="QDKRKIALLGLSFKAGTDDLRESPLVELAEMLIGKGFDLKIFDR
                     NVEYARVHGANREYIESKIPHVSSLLRADLNEVVADADVIVLGNGDELFETVVQQLPP
                     GKKLIDLVGFMRQCSDEVKEGLCW"
BASE COUNT          623 a         1089 c         1168 g          603 t
ORIGIN      
        1 gtttgatccg cgcctgcacc gagtcggcag cggcgcgccg gtagatggcc tcgccttcgg
       61 cctggcgctg gggctcgggg ctcttcacca ggacatcggc caggccgatt tccgcctcct
      121 cgtagcccat ctctgccaac gggcggaagt tctcttccgc cgtctgcaga tcaccgccgg
      181 tcttggcgcg ttcggcgagt tccagatcgg gcagctgggc gcagccgccg atggctacgc
      241 acagcgcgat cgcggtgaga cgcccgttca ttggccggcc gccgtgtcgc tggccggcag
      301 cagcttgctg gcgagcatct cgccttcggc cgccaggcgg gcgtcgaaca ggccgccgag
      361 cggcggaatg cgcacgtcca ccgggcgctt ggccagttcg gtggccagcg gctcgtccgg
      421 ctggatcatc acgcggatgt cggaggccag gccgccgtcc tgcagcgcca gagtggtgat
      481 gcggccgcta cgctcggcgg tctcgccggc gaccacgaag tcgaccgcgg tacccggctg
      541 cagctcgtcg aaggaacggt aggggaagcg cgcctcgacg gtggcaacgg catcgaccgg
      601 cgacagcagg aacaccggag cgcccttgcc cgcggtctga ccatcaccga tcagctgggc
      661 ggtcacgcgg caatcgcagg ggctggtcag ggtgccctgg aaggtcttgc cgaacaggcg
      721 ctgcaggttg tccggggtca ggtcctcggt cggcagcacg cccttgagca cgtccatcat
      781 gttcgaggag aaggtgccca ccggcgcgcc cttggccacg gtgtcgccga ccttgaccag
      841 cgcctgcacg gcaccttcgc gcggcatcga tacctgctgg cccggcaccg ccacctgcgc
      901 cgagtcggcg tgggtgatga agtagatgtc gtacagctgg tacagcacat aggtgcaggc
      961 cgcgacaccg atcaggaaga tcaccaggct caggccggcg gcacgcatgc gaccgaagat
     1021 gccggtcggc gcgccgtcca tgcccttgcg cggcttggtg aagttttccc gctgcagggt
     1081 gctgatcagg tcgccgacat tgatgagctc gccactcagg aacgagctga tgaggtagcg
     1141 aagcgcggcc tgctcgcgct gacgcaggtg gtggaattcg catccggcac gcttgccgcc
     1201 ggcgagggaa cgcacctgga attccacgtc catggcgaaa ccgatgccct ccacctcgaa
     1261 catcagcttg ccgcggcaat actgaccttc gtgcagaaga tggttgcccg gagcgaagga
     1321 gaagccgccg accgaaaggt cgaccaaggg cgcctcaagt tcctgtccct ggggggtgta
     1381 gtagcggatc ttcgccggta gcttgagtcg cgcgtactga cgctgagctt cggcttcatg
     1441 aacaacatta ctgttgatgc tggggctgat cactgcgctc atgttcgttc ctttatgcaa
     1501 tcgagagtct tgaggggagc caacgggtca aacgatccac atcagggcgg ccacgaagac
     1561 gctgcccgcg gagaaggtca tggcccgcga cgaccatggg ttgaaccagc gctggaagct
     1621 ggcgagatcg cggttgagct tggtcttctg gcgcgtccag gactgctggt ccaggcggaa
     1681 gaacacgtac accttcacca gtgcgccgac gatctggttg taatagagga tcaacggata
     1741 ggccggaccg atgctgtgcc cggaggccag caggagcagg gtcagaacca accgggtgag
     1801 gccgatccac agcagataga tcagcaggta ggcaaagccg tatttgatgc tggcgatgat
     1861 cgccaccgag gggccgagca ggctggtcca catcgacacg cgctggtcca gcagcaccac
     1921 gctggtgaag gcccccaggc gccgcacgcc gaggcgcagg gcacgcgagt tctgccgcag
     1981 gttgttgccg taccagcgga acatcagctt gcggctggcc ttgatgaagc tcttctccgg
     2041 cgggtgctcc acggtgtgga tggcggcatc cggcacgtag aaggtgtcgt agccgagacg
     2101 catcaggctg taccagctgg acttgtcgtc gccggtgagg aacttgaagc ggcccaggcg
     2161 ccagtggtca aggtggtcgt tctcgacgtc ggcgatgaag cccgggtcgg tcaccacttc
     2221 ggcacggaac accgacatgc gtccggtcag ggtcagcacg cgcttggaca gggccatcga
     2281 gcacatgttg atgtgccgct gggcgaagcg cagcttgtgc cactcctgca tcacgtaacc
     2341 gccacgcacc tcgcagaact cgttggtggt gaggccgccg aggttgccga acagcgtgaa
     2401 gtacggtgcg gtctggcgga tgacgccgga agacagcacg gtgtcaccgt ccactaccgc
     2461 caccaccgcc cgatcatccg gctgatgccg ggagatcgca cggaagccct gggccaggcc
     2521 gtcacgcttg ccggtgccgg gaatccgcac gatgtccaga cgcacatgct cgggcggcga
     2581 cagccggttc cacaggttct tgaccagcag ctcgtccgag agctcgacga tggaacacac
     2641 cacggtgctc ggatagccgc aatcgatggc ctcctggatc accgagcggt acaccgcggc
     2701 ggtggtcatg gcctcgatgc ggaagctggt caccagcagg tacacgtgcg acggatcggc
     2761 ggccttgccc agcgcgcgag ccctgcgccg gtagtgcggg tagaccacat agaggaagat
     2821 caggccgcga acgtagtgga tcgcgcccat ggagtatcgc cagatcccca ctgcgccgag
     2881 cagcaggagg aagtccgtcg actccggatc gaagatgctg tgcgggagca gcaaggccat
     2941 gccacccagc atcgagatgt agaacaacca gccggcgctg ttgcgcaggc ttccctggat
     3001 actttccatt gttgccaacc ccgtttgagt taccgctttg caacgggggc gtttttattg
     3061 ttgttgtaac gccctgtgca tacctaggtc gcgcagttcg ctaccagcag aggccttcct
     3121 tcacctcatc gctgcactgg cgcatgaagc cgaccaggtc gatgagtttc ttgccggggg
     3181 gcagttgttg aacgacggtt tcgaacagct cgtcgccatt gccgagcacg atgacgtcgg
     3241 cgtcggccac gacttcgttg aggtcggcgc gcagcagcga ggagacgtga ggaatcttcg
     3301 attcgatgta ctcgcggttg gcgccgtgca cacgggcgta ctcgacgttg cggtcgaaga
     3361 tcttcaggtc gaagcccttg ccgatcagca tctcggccag ctccaccagc gggctttcac
     3421 gcaggtcgtc ggtgccggcc ttgaagctca ggccgagcag cgcgatcttg cgcttgtcct
     3481 ggc
//
LOCUS       DATIHC010000878         2019 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17888, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000878 DATIHC010000000
VERSION     DATIHC010000878.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2019
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17888"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..194
                     /locus_tag="VLF16_14680"
     CDS             <1..194
                     /locus_tag="VLF16_14680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="magnesium chelatase"
                     /protein_id="HSX72173.1"
                     /translation="RHCPLDEQNRQWLEQACERLNLSLRAAHRLLKVARTLADLEHTG
                     NITRSHLAEALQYRPDMAC"
     gene            319..>2019
                     /locus_tag="VLF16_14685"
     CDS             319..>2019
                     /locus_tag="VLF16_14685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071705 - nitrogen compound transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HSX72174.1"
                     /translation="MEANTSSLNRPVFFTSAVLILALVLYSVLFQEQAQSQFTLLQGW
                     ILDKASWFYVLTVALILICCVFLAVSRYGDLKLGPDHSQPEYRSATWFAMLFSAGMGI
                     GLMFFGVAEPLMHFTAPPVGEAGTVQAAREAMKLTFFHWGLHAWAIYAIVALILAFFC
                     FRHNLPLTLRSALYPLIGDRIHGPIGHAVDIFAILGTVFGVATSLGYGVLQINSGLNH
                     LFGLPVTTTVQVGLIAVTCFLATLSVASGLNKGVRILSELNLVLAVLLLLFVLTLGPT
                     VFLFKTFVQNSGAYLSEIVSKTFNLYAYEPTDWIGGWTLLYWGWWLSWSPFVGLFIAR
                     ISRGRTIREFICGVLFVPAGFTLLWMTVFGDSAIHMVLNDGLQSLAHTVNVDSSLALF
                     AFLEHLPFSTLISLVAVAMVVVFFVTSADSGALVVDMLASGGKAHTPLWQRLFWSVLI
                     GVVAASLLMADGLKALQTATIASALPFSIVLLASMWGLLRALRLDATKRGIRFQALAG
                     PRHSSRQHGGWERRLRNLVMFPRRSHVTRFISEVVQPACQSVADELRKQGISTGVING
                     D"
BASE COUNT          298 a          723 c          597 g          401 t
ORIGIN      
        1 gacggcactg cccgctcgac gagcagaacc gccagtggct ggaacaggcc tgcgagcgcc
       61 tcaacctgtc gctgcgcgcc gcgcaccggc tgctcaaggt ggcgcgtacc ctggccgacc
      121 tggagcacac gggaaatatc acccgctcgc acctggccga ggccctgcaa taccggcccg
      181 acatggcctg ctgaaacaac atcgatccga caaaattatc ggatttgtat tggcaagaga
      241 aaaaagctat cgactgtgat agcatgaccg gcccttccgc ccttggcggc ccatccgatt
      301 acaaggagag ctagctcaat ggaggcaaat acgtcttcgc tcaatcggcc cgtattcttc
      361 acctcggccg ttctcatcct cgccctcgtg ctgtacagcg tgttgttcca ggagcaggcg
      421 caaagccagt tcaccctgct gcagggctgg attctcgaca aggccagctg gttctatgtc
      481 ctcaccgtcg cattgatcct catctgctgc gtcttcctcg cggtcagccg ctacggcgac
      541 ctcaagctcg gccccgacca cagccagccc gaataccgca gcgccacctg gttcgccatg
      601 ctgttctccg ccggcatggg catcggcctg atgttcttcg gcgtggccga accgctgatg
      661 cacttcaccg cgccgccggt gggcgaggcc ggcaccgtgc aggccgcccg cgaggcgatg
      721 aagctgacgt tcttccactg gggcctgcat gcctgggcga tctacgccat cgtcgcgctg
      781 atcctggcgt tcttctgctt tcgccataac ctgccgctga ccctgcgctc cgcgctctac
      841 ccgctgatcg gcgatcgcat ccacggcccc atcggccacg cggtggacat cttcgccatc
      901 ctcggcacgg tgttcggcgt cgccacctcg ctcggctacg gcgtgctgca gatcaacagc
      961 ggcctgaacc acctgttcgg cctgccggtg accaccacgg tgcaggtggg cctgatcgcc
     1021 gttacctgct tcctcgccac gctgtcggtg gccagcggcc tgaacaaggg cgtgcgcatt
     1081 ctctccgagc tgaacctggt gctcgcggtg ctcttgctgt tgttcgtcct gacgctcggc
     1141 ccgaccgtct tcctgttcaa gaccttcgtg cagaacagcg gcgcctatct ctccgagatc
     1201 gtcagcaaga ccttcaacct ctacgcctac gagcccaccg actggatcgg cggctggacc
     1261 ctgctgtact ggggctggtg gctgtcctgg tcgcccttcg tcggcctgtt catcgcgcgc
     1321 atctcgcgcg gtcgcaccat ccgcgagttc atctgcggcg tgctcttcgt gccggccggc
     1381 ttcaccctgc tgtggatgac ggtgttcggc gacagcgcca tccacatggt gctgaacgac
     1441 ggcctgcaga gcctggccca tacggtgaac gtggacagtt cgctggcctt gttcgccttc
     1501 ctcgagcact tgcccttcag caccctgatt tcgctggtgg cggtggccat ggtggtggtg
     1561 ttcttcgtca cctccgccga ctccggcgcc ctggtcgtgg acatgctcgc ctcgggcggc
     1621 aaggcccaca cgccgctgtg gcaacgcctg ttctggtcgg tcctgatcgg cgtggtggcc
     1681 gcctcgctgc tcatggccga cggcctcaag gccctacaga cggccaccat cgccagcgcg
     1741 ctgccgttct ccatcgtcct gctcgcctcc atgtggggcc tgctgcgcgc attgcgcctg
     1801 gatgccacca agcgcggcat ccgcttccag gccctggcgg gcccgcgcca cagcagccgc
     1861 cagcacggtg gctgggagcg ccgcctgcgt aacctggtca tgttcccgcg ccgctcccac
     1921 gtgacgcgct tcatcagtga agtggtgcag ccggcctgcc agtcggtggc cgacgagctg
     1981 cgcaagcagg gcatttccac cggcgtgatc aacggcgac
//
LOCUS       DATIHC010000879         2108 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_38759, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000879 DATIHC010000000
VERSION     DATIHC010000879.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2108
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38759"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(83..301)
                     /locus_tag="VLF16_14690"
     CDS             complement(83..301)
                     /locus_tag="VLF16_14690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2788 domain-containing protein"
                     /protein_id="HSX72175.1"
                     /translation="METEQFEALMMYVLVGGLMVFMFFIIWDLAKKSKAGRLGTAILF
                     LGLGLCLFAFLAKPLITYIIEVTRGIHG"
     gene            complement(396..875)
                     /locus_tag="VLF16_14695"
     CDS             complement(396..875)
                     /locus_tag="VLF16_14695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020295307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HSX72176.1"
                     /translation="MNKLDRYDLRILAELQRDARISNQELAERIGLSPSPCSRRVKQL
                     EDDGYIARQVALLDRKKLGLSLTAFVLIGMDRHTPERFEHFQAVIRQCPEVLECSLVT
                     GMDADYQLKVVVPDMDHYQKFLLGQLTRIEGVTSVRSSFVLNQVLSSTELPLEHLRG"
     gene            1210..1953
                     /locus_tag="VLF16_14700"
     CDS             1210..1953
                     /locus_tag="VLF16_14700"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HSX72177.1"
                     /translation="MTSTADLRRRAGLLLWAFLLLFACWKALDLGRPGEPPSREQRVA
                     RDFASLRASDGRAALVMLGDSITAGRQWSAAPGCRPPLNLAVSGATTADLLRHLDLVE
                     RAGAAQALLMIGINDLRHGVSLDELLANYSVILGDLQRGGVTPVLQSTLRVTPMHRDH
                     QAINRQVDALNRQLRAWAREQGWRFVEVQAVVGPRGYRGDGLHLNVAGYAAWQRLIDP
                     LLCPGSDQPGQAQQPPGEDEHLYQQAGEA"
     gene            complement(1879..>2108)
                     /locus_tag="VLF16_14705"
     CDS             complement(1879..>2108)
                     /locus_tag="VLF16_14705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HSX72178.1"
                     /translation="LENLPLQAAVLLYALHAGQTAITDPLAPVLLGARIFQSLVHMVG
                     TGPLLVWLRFAGLLVQMLILAWWLLRLSGLV"
BASE COUNT          349 a          674 c          730 g          355 t
ORIGIN      
        1 tccgggctac aggcttggcc gagacagggc tggcggaagg gctgtcgcgg accaggccgc
       61 tgtagcgagg ttctacgtag cgtcagccgt gaatgccgcg cgtcacttcg atgatgtagg
      121 tgatcagcgg cttggccagg aaggcgaaca ggcacaggcc caggcccagg aacaggatgg
      181 cggtgccgag gcggccggcc ttggacttct tcgccaggtc ccagatgatg aagaacatga
      241 acaccatcag tccgccgacc aggacgtaca tcatcagggc ttcgaactgt tcggtttcca
      301 tggcgacctc gcgacttgtg actggatgac ggcgggccgg cgattatacg cgtgcccgtc
      361 cgccgtgcag tagacgccgg ctcgcgctgc gacgttcagc cgcgcaggtg ttccagcggc
      421 agctcggtgc tggacagcac ctggttgagc acgaagctgg agcgcacgct ggtgacgccc
      481 tcgatgcggg tcagctggcc gagcaggaat ttctggtagt ggtccatgtc cggcaccacc
      541 accttgagct ggtagtcggc gtccatcccg gtcaccaggc tgcactccag cacctccggg
      601 cactggcgga tcaccgcctg gaaatgctcg aaacgctcag gggtgtggcg gtccatgccg
      661 atcagcacga aggcggtcag cgacagaccg agcttcttgc ggtccagcag tgccacctgg
      721 cgggcgatgt agccgtcgtc ctcgagctgc ttgacccgcc gcgagcaggg cgagggcgac
      781 aggccgatgc gttcggccag ctcttgattg gagatgcgcg catcgcgctg caattcggcg
      841 aggatgcgca ggtcgtaacg gtccagtttg ttcattgttc ggcttcttcg ttcgaggatt
      901 gcgccgatca atctatcagt gaagaaaaat tgcgcaagta atgttgtcgt gagcaatatt
      961 cgcaatctct gggcacggtt ggctcgctaa gctttccctc agtttcaagg cccggacgtt
     1021 gtccacccgc gccgcccaat caggcgccgc ggtgccggcg gtcccaccgg atcgtgcagg
     1081 ctcccgggtc cgcactgccc aaccaggcgg gcgaggaaag aagcggtgac acgatcgcgc
     1141 gcgacggaca agaaaaaggg gaggcctgga gcctcccctt tttctttgcg cgtgcggcaa
     1201 gatcggcaca tgacctcgac cgccgatctt cgccgccgcg ccggcctgct gctatgggcc
     1261 tttctcttgc tgttcgcctg ctggaaggcg ctggatctgg ggcgcccggg cgaaccgccg
     1321 agccgcgagc agcgcgtggc gagggatttc gcctcccttc gcgcatccga cgggcgcgcg
     1381 gcgctggtca tgctgggcga ctccattacc gccggccgcc agtggagcgc cgcgccgggc
     1441 tgccgaccgc cgctgaacct ggcggtgtcc ggtgccacca cggccgatct gctgcgccat
     1501 ctcgatctgg tggagcgcgc cggcgccgcg caggcgctgc tgatgatcgg catcaacgac
     1561 ctgcgccatg gcgtgtcgct ggatgagttg ctggccaatt acagcgtgat tctcggcgat
     1621 ctgcagcgcg gcggcgtcac ccctgtgctg caatcgaccc tgcgggtgac gccgatgcac
     1681 cgcgatcatc aggccatcaa ccggcaggtg gacgcgctga accggcaatt gcgcgcctgg
     1741 gcgcgcgagc agggctggcg cttcgtcgag gtgcaggcgg tggtcgggcc gcgcggctac
     1801 cgcggcgacg gcctgcacct caacgttgcg ggatacgcgg cctggcagcg gctgatcgat
     1861 ccgctgctgt gtcccggctc agaccagccc ggacaggcgc agcagccacc aggcgaggat
     1921 gagcatctgt accagcaggc cggcgaagcg tagccagacc agcagcgggc cggtgccgac
     1981 catgtgcacc agcgactgga agatgcgcgc gccgagcaac acgggggcca gcgggtcggt
     2041 aatcgcggtc tgcccggcgt gcagggcgta gagcagcacc gcggcctgca gcggcaggtt
     2101 ctccaggc
//
LOCUS       DATIHC010000880         2483 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27348, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000880 DATIHC010000000
VERSION     DATIHC010000880.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2483)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2483)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2483
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27348"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2457)
                     /gene="dnaE"
                     /locus_tag="VLF16_14710"
     CDS             complement(<1..2457)
                     /gene="dnaE"
                     /locus_tag="VLF16_14710"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HSX72179.1"
                     /translation="MTASFVHLRLHTEFSLVDGLVRVKPLVKAVAGAGMPAVAVTDMS
                     NMCSLVKFYKTAMGAGIKPICGADIWLASPDEDGPLSRLTLLAMNAKGYRNLTELISR
                     GWAEGQDNGLVIIQRDWVKEAAEGVIALSGAREGEVGMALLAGEPSRAEAFLNEWLEV
                     FPERFYLEVQRTNRVNDEEHLHAAVDLATRTGVPLVATNDVRFLKPGDFEAHETRVCI
                     GEGRTLDDPRRPRNYSEEQYLKTPEEMAELFSDLPEALENTVEIAKRCNIDVQLGKYF
                     LPDFPTPNGMGIDDYLRHASFEGLEERLAVLWPKDTTPNYEEKRQVYVDRLNFELDII
                     IQMGFPGYFLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFER
                     FLNPERISMPDFDVDFCMDGRDRVIDYVADKYGRNAVSQIITFGSMAAKAVVRDVARV
                     QGKSYGLADRLSKMIPFEVGMTLEAAYEQEEVLRDFLKSDEEAQEIWDMALKLEGIVR
                     GTGKHAGGVVIAPTKLTDFAPTSCDEEGAGLVTQFDKDDVEQAGLVKFDFLGLRTLTI
                     IKWAMETIHREQRKKGATDEELVDIDFIPLDDKKTYDMLQKAETTAVFQLESRGMKEL
                     IKKLKPDCLEDMIALVALFRPGPLQSGMVDDFINRKHGREQLSYPHPDYQYAGLEPVL
                     KPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGCANNN
                     IDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHN
                     TDKVVILIEECRHMKLRIDPP"
BASE COUNT          393 a          792 c          822 g          476 t
ORIGIN      
        1 cggcgggtcg atgcgcagct tcatgtggcg gcattcctcg atgaggatca ccaccttgtc
       61 ggtgttgtgc atatccgccg acagcaccgc ggccatgaac ggcgcggggt aatgcgcctt
      121 cagccaggcg gtctggtagg acaccaggcc gtaggcggcg gagtgcgact tgttgaagcc
      181 gtagccggcg aacttctcca ccaggtcgaa gatgttgccc gcgaggtccg catcgatatt
      241 gttgttggcg caaccctcga tgaaaccgcc gcgctgcttg gccatctcct cgggcttctt
      301 cttgcccatg gcgcggcgca gcatgtccgc gccgccgagg gtgtagccgg ccatgacctg
      361 ggcgatctgc atcacctgtt cctggtacag gatgatgccg taggtgggct tgagcacggg
      421 ctccaggccc gcgtactggt agtccggatg cgggtaggac agctgctcgc gaccgtgctt
      481 gcggttgatg aagtcgtcca ccatgcccga ctgcagcgga ccggggcgga acagcgccac
      541 cagtgcgatc atgtcttcca ggcagtccgg cttgagcttc ttgatcagct ccttcatgcc
      601 gcgcgattcg agctggaaga ccgcggtggt ctctgccttc tgcagcatgt cgtaggtctt
      661 cttgtcatcc agcgggatga agtcgatgtc gaccagctcc tcgtcggtcg cgcccttctt
      721 gcgctgctcg cggtggatgg tctccatcgc ccacttgatg atggtcaggg tgcgcaggcc
      781 gaggaagtcg aacttcacca ggccggcctg ttcgacgtcg tccttgtcga actgggtcac
      841 cagaccggcg ccctcctcgt cgcaggaggt cggcgcgaag tcggtcagct tggtcggcgc
      901 gatcaccacg ccgccggcgt gcttgccggt gccgcgcacg atgccctcga gcttgagcgc
      961 catgtcccag atctcctggg cttcctcgtc gctcttgagg aagtcgcgca gcacttcctc
     1021 ctgttcgtag gccgcctcca gggtcatgcc gacctcgaag gggatcatct tcgacagccg
     1081 atcggccagg ccgtaggact tgccctgcac ccgcgccacg tcgcgcacca ccgccttggc
     1141 cgccatggag ccgaaggtga tgatctggct caccgcgttg cgaccgtact tgtcggccac
     1201 gtagtcgatc acccggtcgc ggccgtccat gcagaagtcg acgtcgaagt cgggcatgga
     1261 aatacgttcg gggttgagga agcgctcgaa cagtaggtca taggccagcg ggtcgaggtc
     1321 ggtgatcttc agtacgtagg ccaccagcga gccggcaccc gagcctcggc cggggcccac
     1381 cggcacgccg ttgttcttcg cccactggat gaagtccatc acgatgagga agtaaccggg
     1441 gaagcccatc tggatgatga tgtcgagctc gaagttgagc cggtcgacgt agacctggcg
     1501 cttctcctcg tagttgggcg tggtgtcctt gggccacagc acggccagac gctcttccag
     1561 gccctcgaag gaggcgtggc gcaggtagtc gtcgatgccc atgccgttgg gcgtggggaa
     1621 gtcggggagg aagtatttgc ccagctgcac gtcgatgttg cagcgcttgg cgatctccac
     1681 cgtgttctcc agcgcctcgg gcagatcgga gaacagctcg gccatctcct cgggcgtctt
     1741 gagatattgc tcttcggagt agttgcgcgg gcggcgcggg tcatcgaggg tgcggccctc
     1801 gccgatgcac acgcgggtct cgtgggcttc gaagtcgccc ggtttgagga agcgtacgtc
     1861 gttggtcgcc accagcggca cgccggtacg ggtcgccagg tcgacggccg cgtgcagatg
     1921 ctcctcgtcg ttgacccggt tggtgcgctg cacctccagg tagaagcgct ccgggaacac
     1981 ctccagccac tcgttcagga aggcctcggc gcggctcggc tcgccggcca gcagggccat
     2041 gccgacctcg ccctcgcggg cgccggacag ggcgatcacg ccctcggccg cctccttgac
     2101 ccagtcgcgc tgaatgatta ccaggccgtt gtcctggccc tcggcccagc cgcgggaaat
     2161 cagttcggtg aggttgcgat aacccttggc gttcatcgcc agcagggtca gacgcgacag
     2221 cggaccgtcc tcgtccgggc tggccagcca gatgtcggca ccgcagatcg gcttgatgcc
     2281 ggcgcccatg gcggtcttgt agaacttcac cagcgagcac atgttgctca tgtcggtgac
     2341 ggccacggcc ggcatgccgg cgccggccac cgccttgacc agaggtttga cccgcaccag
     2401 gccgtcgacc agggaaaact cggtgtgcag gcgcagatgg acgaagctgg cggtcatggc
     2461 aatcccgttg gtgacacaga aac
//
LOCUS       DATIHC010000881         2153 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17898, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000881 DATIHC010000000
VERSION     DATIHC010000881.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2153)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2153)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2153
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17898"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..266)
                     /locus_tag="VLF16_14715"
     CDS             complement(<1..266)
                     /locus_tag="VLF16_14715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HSX72180.1"
                     /translation="MIFTQEHEELRRTVRNFVEHEINPHVDEWEKAGKFPMHEIFKKA
                     GDLGLLGISKPEKFGGMGLDYSYSVVAAEEFGTIHCGGIPMAIGV"
     gene            complement(349..1965)
                     /gene="atuC"
                     /locus_tag="VLF16_14720"
     CDS             complement(349..1965)
                     /gene="atuC"
                     /locus_tag="VLF16_14720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="geranyl-CoA carboxylase subunit beta"
                     /protein_id="HSX72181.1"
                     /translation="MPVIQSELDVHGDSFAQNREAMLAAIASFRDVEQKVLDKAAEAK
                     AKFEKRGQLLPRERLNLLLDPGSPFLELCSLAGYKLHDDKDGTQAGGGIIAGIGYVAG
                     VRCLVIANNSAIKGGTISPTGLRKSLRLQQVASENKLPIVTLAESGGANLTYAADIFV
                     EGARAFANQARLSAAGIPQVTVVHGSSTAGGAYQPGLSDYVVVVRGKAKMFLAGPPLL
                     KAATGEIATDEELGGAEMHAQVAGTAEYLAENDADGVRLAREIVGMLPWNAQLPVRPQ
                     RAYKEPLYPAHELLGVVPADAKKPYDVREIIARIADGSEFLDFKNEFDSQTVCGHLQI
                     EGQPCGLIGNNGPITPRGAAKAAQFIQLCEQSNTPILFFHNTTGFMVGTESEQLGVIK
                     HGSKMSQAVANATVPKLTIVVGGSYGAGNYAMCGRGLDPRFIFAWPNSKTAVMGGAQA
                     GKVLRIVTEDKHRKEGKEADPKMLDMLEMATAQKLDSQSTALYGTASLWDDGLIDPRD
                     TRKLLGFLLDICAEANLRPLKKNSFGVARF"
     gene            complement(1970..>2153)
                     /locus_tag="VLF16_14725"
     CDS             complement(1970..>2153)
                     /locus_tag="VLF16_14725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009044912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="2,4-dienoyl-CoA reductase"
                     /protein_id="HSX72182.1"
                     /translation="VAAAIVFLLSPGAHFISGNTIRIDGAASQGTRAWTLGKAKVSES
                     YNGFHRAYLPEVLKGE"
BASE COUNT          309 a          667 c          760 g          417 t
ORIGIN      
        1 acgccgatgg ccatggggat gccgccgcaa tggatggtgc cgaactcttc ggcggcgacc
       61 accgagtagc tgtagtccag gcccatgccg ccgaattttt ccggcttgga gatgcccagc
      121 aggccgaggt cgccggcctt cttgaagatc tcgtgcatgg ggaatttgcc ggccttttcc
      181 cactcgtcga cgtgcgggtt gatctcgtgc tcgacgaagt tgcgcacggt gcggcggagt
      241 tcttcgtgtt cctgggtgaa gatcattgtt gttctccttg taggggggcg gggccgccta
      301 ggctgtgcgc accgcgatct tggttggtgc gcacggcgca ccctacggtc agaatctcgc
      361 gacgccgaag ctgttcttct tcaacggacg cagattggct tctgcgcaga tatccagcaa
      421 aaagcccagc agcttgcgcg tatcgcgcgg gtcgataagg ccgtcgtccc acaggctggc
      481 ggtgccgtag agcgcggtgg actggctgtc gagcttctgc gcggtggcca tttccagcat
      541 atcgagcatc ttcggatcgg cctccttgcc ctctttacgg tgcttgtcct cggtgacgat
      601 gcgcagcacc ttgccggcct gggcgccgcc catcacggcg gtcttgctgt tgggccaggc
      661 gaagatgaag cgcggatcca gacctctacc gcacatggcg tagttgccgg cgccgtagga
      721 gccgccgacg acgatggtca gcttcggcac cgtggcgttg gccaccgcct ggctcatctt
      781 cgagccgtgc ttgatcacgc cgagctgctc ggattccgtg ccgaccatga agccggtggt
      841 gttgtggaag aacaggatcg gcgtgttgct ctgctcgcac agctggatga actgggcggc
      901 tttcgccgcg ccgcgcgggg tgatcgggcc gttgttgccg atcaggccgc agggctggcc
      961 ttcgatctgc aggtggccgc aaacggtctg gctgtcgaac tcgttcttga agtcgaggaa
     1021 ctccgagccg tcggcgatgc gggcgatgat ctcgcgcacg tcgtagggct tcttggcgtc
     1081 cgccggaacc accccgagca gctcgtgggc cgggtacaac ggctccttgt aggcgcgctg
     1141 cgggcgcacc ggcagctggg cgttccacgg cagcatgccg acgatctctc gggccaggcg
     1201 cacgccgtcg gcgtcgttct cggccaggta ctcggcggtg ccggcaacct gggcgtgcat
     1261 ctcggcgccg cccagctcct catcggttgc gatctcgccg gtggcggcct taagcaatgg
     1321 gggacctgcg aggaacatct tggccttgcc gcgcaccact accacgtagt cggacaagcc
     1381 cggctggtag gcgccgccgg cggtgctgga gccgtgcacc acggtgacct gggggatacc
     1441 ggccgcggac aggcgcgcct ggttggcgaa ggcgcgtgcg ccctcgacga agatgtcggc
     1501 ggcgtaggtc aggttggcgc cgccgctctc ggccagggtg acgatgggca gtttgttctc
     1561 gctggccacc tgctgcaggc gcagggactt gcgcaggccg gtgggggaga tggtgccgcc
     1621 cttgatcgcg ctgttgttgg cgatcactag gcaacgcacg ccggccacgt aaccgatgcc
     1681 ggcgatgatg ccgccgccgg cctgggtgcc gtccttgtcg tcgtgcagtt tgtagccggc
     1741 cagggagcag agttcgagga acgggctacc gggatcgagc agcaggttga ggcgctcgcg
     1801 cggcagcagc tggccacgct tctcgaactt cgccttggcc tcggccgcct tgtcgaggac
     1861 cttctgctcc acgtcgcgga agctggcgat ggcggccagc atggcctcgc ggttctgcgc
     1921 gaagctgtcg ccgtggacgt cgagttcgga ctggatcacc ggcatcgcat cactctccct
     1981 tgagtacttc gggcaagtag gcccgatgga agccgttgta ggactcgctg accttggcct
     2041 tgcccagcgt ccaggcgcgg gtgccctggc tggcggcacc gtcgatgcgg atggtgttgc
     2101 cgctgatgaa atgggcgccg ggggagagca ggaagacgat ggcagcggcc acc
//
LOCUS       DATIHC010000882         2790 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_45790, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000882 DATIHC010000000
VERSION     DATIHC010000882.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2790
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45790"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..725)
                     /locus_tag="VLF16_14730"
     CDS             complement(<1..725)
                     /locus_tag="VLF16_14730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HSX72183.1"
                     /translation="MQVKHLLLIATLAFITACSSNKPEVDENLSETELYQQAQEDLSS
                     SSYNNAIAKLKALESRYPFGRYAEQAQLELIYAYYKNVEPEAAKSAAERFIRLHPQHA
                     NVDYAYYLKGLASFDQDRGLIARFIPLDLTKRDPGAARDSYNEFAQLTSRFPNSRYAP
                     DAKARMIYLRNLLAAYEIHAGRYYLTRQAYVAAANRGRYVVENFQETPSVGDGLALMV
                     EAYQRLELNDLAATSLETLKLNYP"
     gene            872..1843
                     /gene="rluD"
                     /locus_tag="VLF16_14735"
     CDS             872..1843
                     /gene="rluD"
                     /locus_tag="VLF16_14735"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003298575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HSX72184.1"
                     /translation="MSEDSDQLIQLTAEVPSDLGGQRLDQVAAQLFDEYSRSRLSAWI
                     KDGRLTVDGAVIRPRDIVHSGAVLSLEAEQEAQGEWVAQDIPLNIVYEDEHILVIDKP
                     AGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKDTTGLMVVAKTLQAQTK
                     LVDQLQKRTVSRIYECICIGVITSGATIDAPIGRSSANRQRMAVIDGGKPAVTHYRVL
                     ERFRSHTHVRVKLETGRTHQIRVHMTHAGYPLVGDPLYAGRFRIPPAASPTLVQTLKE
                     FPRQALHARFLELEHPATGQRMKWVSPLPEDLVWMLSLLRQDNESFV"
     gene            1827..2561
                     /gene="pgeF"
                     /locus_tag="VLF16_14740"
     CDS             1827..2561
                     /gene="pgeF"
                     /locus_tag="VLF16_14740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015475706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan editing factor PgeF"
                     /protein_id="HSX72185.1"
                     /translation="MNPSSDWLQPDWPAPANVRTCVTTRAGGTSPAPFDSLNLGDHVE
                     DDPVAVAANRQRLIDRLGCQPAWLKQVHSPDVVEAEPVQVSVADASWSATPGVACAVL
                     TADCLPALFCDRAGTRVAAAHAGWRGLAGGVLENTVAALGAAPDELLVWLGPAIGPDS
                     FEVGPEVREAFLARHAEAESAFCTSRNPGKFMADICALARVRLAAIGVTAVYGGGLDT
                     FTDPRFFSYRRAARTGRFASLIWLAD"
BASE COUNT          434 a          929 c          932 g          495 t
ORIGIN      
        1 ggatagttga gtttcagggt ttccagactg gtggcggcca ggtcgttcag ctccaggcgc
       61 tggtaggcct cgaccatcag ggccaggcca tcgccgaccg agggcgtttc ctggaagttc
      121 tcgaccacgt agcggccgcg gttggcggcg gcgacgtagg cctgacgggt caggtaatag
      181 cggccggcgt ggatctcgta ggcggccagc aggttgcgca ggtagatcat gcgcgccttg
      241 gcgtccggcg cgtagcggct gttggggaag cggctggtga gctgggcgaa ctcgttgtac
      301 gagtcgcggg ccgcgcccgg gtcgcgcttg gtcaggtcca gcgggatgaa gcgggcgatc
      361 aggccgcggt cctggtcgaa ggaggccagg cccttgaggt agtaggcgta gtcgacgttg
      421 gcgtgctgcg ggtgcaggcg gatgaagcgc tcggcggcgg acttggcggc ttccggctcg
      481 acgttcttgt agtaggcgta gatcagctcg agctgggcct gttcggcgta gcggccgaag
      541 gggtagcgcg actccagggc cttcagcttg gcgatggcgt tgttgtagct gctgctgctg
      601 aggtcttcct gggcctgctg gtacagctcg gtctcgctca ggttctcatc cacttccggc
      661 ttgttggagg agcacgcggt gatgaaggcg agggtggcga tcagcagcag gtgtttcact
      721 tgcatggtgg cttgcgtccc tgtgacggcg gctgtctagg cctctgccgt cctgttatga
      781 tgggcgcccc ggaaatgccg ggacaaagac gccgtattta accacagcgt gccgccgaaa
      841 ccaaaagccg caccgccctc cgcagcagcc catgtccgaa gactccgatc agctcattca
      901 actcaccgcc gaagtgccgt ccgacctcgg tggccagcgc ctcgaccagg tcgccgccca
      961 gctgttcgac gagtactcgc gctcgcgcct gtccgcctgg atcaaggacg gtcgcctgac
     1021 cgtcgatggc gccgtgattc gcccgcgcga catcgtccac agtggcgccg tgctcagcct
     1081 ggaggccgag caggaggccc agggcgagtg ggtggcgcag gacatcccgc tgaatatcgt
     1141 ctacgaggac gagcacatcc tggtgatcga caagcccgcc gggctggtcg tgcatccggc
     1201 ggccgggcat gccgacggca ccctgctcaa cgccctgctg caccacgtgc cggacatcat
     1261 caacgtgccg cgcgcgggca tcgtccatcg tctggataag gacaccaccg gcctgatggt
     1321 ggtggcgaag accctgcagg cgcagaccaa gctggtcgac cagctgcaga aacgcaccgt
     1381 cagccgcatc tacgaatgca tctgcatcgg cgtgattacc tccggcgcca ccatcgacgc
     1441 accgatcggc cgcagctcgg ccaaccgcca gcgcatggcg gtgatcgacg gtggcaagcc
     1501 ggccgtgacc cactaccggg tgttggagcg cttccgctcg cacacccatg tgcgggtcaa
     1561 gctggagacc gggcgcaccc accagattcg cgtacacatg acccatgccg gctatccgct
     1621 ggtgggcgat ccgctgtacg cagggcgctt ccgtattccg ccggcggcca gcccgacgct
     1681 ggtgcagacc ctcaaggagt ttccgcgtca ggccctgcac gcgcgctttc tcgagctcga
     1741 gcacccggct accggccagc gcatgaagtg ggtctcgccg ctgcccgaag atctggtgtg
     1801 gatgctctcg ctgctgcgcc aggacaatga atccttcgtc tgactggctg cagccggact
     1861 ggccggcacc ggccaatgtc cgcacctgcg tcaccacccg tgccggcgga accagtccgg
     1921 cgccattcga tagcctaaat ctcggcgacc acgtcgagga cgatccggtc gctgttgccg
     1981 ccaatcgcca gcgtctgatt gatcgcctcg gctgccaacc ggcctggctg aagcaggtgc
     2041 acagccccga cgtggtcgag gccgagcccg tccaagtatc cgtcgccgac gccagctgga
     2101 gtgccacgcc gggcgtcgcc tgcgccgtgc tgaccgccga ctgcctgccg gcgctgttct
     2161 gcgaccgcgc cggcacccgc gtggcggcgg cccatgccgg ctggcgcggg ctggccgggg
     2221 gcgtgctgga gaacacggtc gccgccctcg gcgccgcgcc ggacgaactg ctggtctggc
     2281 tcggcccggc catcggcccc gactccttcg aagtgggccc cgaggtgcgc gaggcgttcc
     2341 tggccaggca cgcggaggcc gagtctgcgt tctgcaccag ccggaacccc ggcaagttca
     2401 tggccgatat ctgcgccctg gcgcgcgtcc gcctggcggc catcggcgtc accgccgtgt
     2461 acggcggcgg gctggacacc ttcaccgatc cgcgtttctt ttcttatcgc cgcgccgccc
     2521 gtaccgggcg tttcgcctcg ctgatctggc tggcggactg atccgcatca atttgtcggc
     2581 gcttgaatcg gaaaaaactg tccttatcta gagagcaacc tcatctagag agtcattgcg
     2641 ggcttcacta ttgggagcaa ttcagcgctc cggcccgctc atcgaaggaa ggacattcca
     2701 tgcgaatcga ccgtttgacc agcaagctgc agcttgccct gtccgatgcc caatccgccg
     2761 ccgtgggcct ggaccattcc tccatcgaac
//
LOCUS       DATIHC010000883         2569 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_45796, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000883 DATIHC010000000
VERSION     DATIHC010000883.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2569
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45796"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..100
                     /locus_tag="VLF16_14745"
     CDS             <1..100
                     /locus_tag="VLF16_14745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HSX72186.1"
                     /translation="LAAAQSWADADPYRAAGVYASVLVKPFKKVLP"
     gene            145..555
                     /locus_tag="VLF16_14750"
     CDS             145..555
                     /locus_tag="VLF16_14750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019692425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor 2"
                     /protein_id="HSX72187.1"
                     /translation="MRQGPLLLLFVALSVTPGLQAEESQPQPIAPPQAPAVADDSAAR
                     IAALQQELTESQRQLGELQAATGERESAQIGRLRQDNQRLKLQLKQAQANVPPRLFSE
                     QQLWFAIGAGTALLAFIVGRLSAGGRNKRRSEWV"
     gene            566..1243
                     /locus_tag="VLF16_14755"
     CDS             566..1243
                     /locus_tag="VLF16_14755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010450018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSX72188.1"
                     /translation="MTDLLLIDDDRELCELLASWLQQEGFAVRACHDGVSARSALAAT
                     APAAVILDVMLPDGSGLELLKQLRGEHPDLPVLMLSARGEPFDRILGLELGADDYLAK
                     PCDPRELTARLRAVLRRSQPVASPSRQELGDLSYSPQRGMASLGEHEIALTLSEGRIL
                     EALLQQPGEPLDKQALAQLALGRKLTLYDRSLDMHVSNLRKKLGPHPDGRPRIVALRG
                     RGYYYAP"
     gene            1372..1800
                     /locus_tag="VLF16_14760"
     CDS             1372..1800
                     /locus_tag="VLF16_14760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014590086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HSX72189.1"
                     /translation="MRKTLTALFLAASLPTLAVAMPESAPCHKPMHGEHRGHGMRMFK
                     ELDLSAEQREQVGKLMHERRNDPREITQKYLQKLPKADQDALKKELETARLEHDKAFR
                     AILTPEQQKTLDARKAEMQKRRAERAEFEAWKAEKAKQAQ"
     gene            1861..>2569
                     /locus_tag="VLF16_14765"
     CDS             1861..>2569
                     /locus_tag="VLF16_14765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014596985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HSX72190.1"
                     /translation="MRSLFWRIFASFWLAVALVAGLSMLLGRALNQDAWVLAHHPALD
                     DFAERWSRVYRSEGPVAAQRFLERRKQRYRVDTQVLGEDGQPLVDGTFPARAAAYEAR
                     QDNPRRLPWRRLTEEYSNPATGETYLFIYRIPHPEMMAWHRESLFWPLSALAIALVVL
                     TAVSLLLTLSITRPLGRLRGAVHDLGQTTYQQNSLARLADRGDEFGVLARDFNRMGSR
                     LQDLIGSQRQLLRDVSHE"
BASE COUNT          434 a          976 c          808 g          351 t
ORIGIN      
        1 cctcgccgcc gcccagagct gggcggacgc cgacccctac cgtgccgccg gcgtctacgc
       61 cagcgtgctg gtcaagccct tcaagaaagt actgccctga ccgaccgccc ggtccataac
      121 aataattcgc caacagggaa tgccatgcgc caaggtccgt tgctcctgct gttcgtcgcg
      181 ctctccgtca cgccgggcct gcaggccgag gaatcccagc cgcagccgat cgccccaccc
      241 caggcgcccg ccgtcgccga cgacagcgcc gcgcgcattg ccgccctgca gcaggagctg
      301 accgagagcc agcgccagct cggcgagttg caggccgcga ccggcgagcg cgagagcgcg
      361 cagatcggcc gcctgcgcca ggacaatcag cgcctcaagc tgcagctcaa gcaggcccag
      421 gccaacgtcc cgccgcgcct gttcagcgag cagcagctgt ggttcgccat cggcgccggc
      481 accgcgctgc tcgccttcat cgtcggccgc ctgagcgctg gcgggcgcaa caaaaggcgt
      541 agcgagtggg tgtgaagcac cgaccatgac cgacctgctg ctgatcgacg acgaccgcga
      601 gctctgcgaa ctgctggcca gctggctgca gcaggagggc ttcgcggtgc gcgcctgcca
      661 cgacggcgtc agcgcccgca gcgccctggc cgcaacggcg ccagcagcgg tgatcctcga
      721 tgtcatgctg cccgacggca gcgggctgga gctactcaag cagctgcgcg gcgagcaccc
      781 cgacctgccg gtgctgatgc tctcggcccg tggcgaaccc ttcgaccgca tcctcggcct
      841 ggagctgggc gccgacgatt acctggccaa gccctgcgac ccgcgtgagc tgaccgcccg
      901 cctgcgcgcc gtgctgcgcc gcagccagcc ggtggcgagc ccctcgcgcc aggagctggg
      961 cgacctcagc tacagcccgc aacgcggcat ggccagcctc ggcgaacacg agatcgccct
     1021 gaccctctcc gaaggccgca tcctcgaggc gctgctgcag cagcccggcg agccgctgga
     1081 caagcaggcc ctggcgcagc tggctctggg acgcaagctg accctctacg atcgcagcct
     1141 ggacatgcac gtcagcaacc tgcgcaagaa gctcggcccg cacccggacg gccgcccgcg
     1201 catcgtcgcg ctgcgcggtc gcggctacta ctacgcaccc tgatccggcg gccggcgatc
     1261 cggcgcgccg gctttaccct gtctttaccc accgctgacc gcgcttgacc ttgccctccc
     1321 tagactgggc tcatccggta acccaccggt ttagagacaa ggagacacac catgcgcaag
     1381 accctcaccg ccctgttcct ggccgccagc ctgccgaccc tcgccgtcgc gatgccggag
     1441 agcgcgccct gccacaagcc gatgcacggc gagcaccgcg gccacggcat gcggatgttc
     1501 aaggaactgg acctcagcgc cgaacagcgc gagcaggttg gcaaactgat gcacgaacgc
     1561 agaaacgacc cgcgcgagat cacccagaag tatctgcaga agctgcccaa ggccgatcag
     1621 gacgcgttga agaaagagct ggaaaccgcc cgcctggagc acgacaaggc cttccgcgcc
     1681 atcctcaccc cggagcagca gaagaccctc gacgcacgca aggccgagat gcagaagcgc
     1741 cgcgccgaac gcgccgagtt cgaggcctgg aaagccgaga aggccaagca ggcccagtaa
     1801 ttcccacgcc ctacccgccc ggctcctcga gccgggcttt gtcgttcgag gagcccctcc
     1861 atgcgttcac tgttctggcg catcttcgcc agcttctggc tggcggtcgc cctggtcgcc
     1921 ggcttgtcca tgctgttggg ccgggcactg aaccaggacg cgtgggtgct cgcccaccac
     1981 cccgcgctgg acgacttcgc cgagcgctgg agccgggtgt atcgcagcga agggccggtc
     2041 gccgcgcagc gttttctcga gcgtcgcaag cagcgctacc gggtcgacac ccaggtgctc
     2101 ggcgaagacg gccagccgtt ggtagacggt accttcccgg cccgggccgc cgcctacgag
     2161 gcgcgccagg acaatccgcg ccgcctgccc tggcggcgcc tgaccgagga atacagcaat
     2221 cccgccacgg gcgagaccta cctgttcatc taccgcatcc cccacccgga aatgatggcc
     2281 tggcaccgcg aaagcctctt ctggccgctc agcgcgctgg ccatcgccct ggtggtgctg
     2341 accgccgtca gcctgctgct gaccctgtcc atcacccgtc cgctcgggcg tctgcgcggt
     2401 gcggtacacg acctgggcca gaccacctac cagcagaaca gcctggcgcg gctggccgac
     2461 cgcggcgacg agttcggcgt actggcccgc gacttcaacc gcatgggctc gcgcctgcag
     2521 gacctgatcg gcagccagcg ccagttgctg cgcgacgtgt cccatgagt
//
LOCUS       DATIHC010000884         1553 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27365, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000884 DATIHC010000000
VERSION     DATIHC010000884.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1553
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27365"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..557
                     /locus_tag="VLF16_14770"
     CDS             <1..557
                     /locus_tag="VLF16_14770"
                     /EC_number="3.4.21.102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017677914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carboxy terminal-processing peptidase"
                     /protein_id="HSX72191.1"
                     /translation="HGELKLTLAKFYRVSGQSTQHQGVLPDIAYPDIVDTQEIGESAL
                     PEAMPWDSINPALKPDSNPYKPFLAELKSRHESRTANHPDFVFTRERLALAQKLMAET
                     SVSLNEKARRAQHAEIEAKQLALENAKRKAKGEELLKEIKEEDEDAPPVEPEKTKPED
                     DAYLTESGHILLDYLGLEATVAKH"
     gene            642..>1553
                     /locus_tag="VLF16_14775"
     CDS             642..>1553
                     /locus_tag="VLF16_14775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007898875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSX72192.1"
                     /translation="MTATEQLSALDSILAHGDLHSLFQPIISLSERRVLGYEALTRGP
                     SNSSLHAPIALFSVARNAGRLSELELAARKCAFGRFRDQQLDGKLFLNVSPESLLEAS
                     HQPGRTLRLLQEFGISPDRVVIELTEQAPIEDFELLDTALHHYRAMGFSIALDDLGAG
                     YSSLRLWSELRPDYVKIDRHFIDGIHQDAVKREFVDSILKMAKASRAQVIAEGIELAE
                     ELSTLIEMGVDLVQGYLLCRPQEQPPRDAAKLLPRLDVPSAPLGEEGGDLSALLNEQQ
                     AVSSDTPIAVVLEAFRAQANLNSLAVLD"
BASE COUNT          307 a          558 c          452 g          236 t
ORIGIN      
        1 accatggcga gctgaagctg actctggcca agttctaccg tgtctcgggg cagagcaccc
       61 agcaccaggg cgtgctgccg gacatcgcct acccggacat cgtcgacacc caggagatcg
      121 gtgaaagcgc cctgcccgag gccatgccgt gggacagcat caacccggcg ctgaaaccgg
      181 acagcaaccc ctacaagccc ttcctcgccg agctgaagtc gcgccacgaa tcacgcaccg
      241 cgaaccatcc ggacttcgtc ttcacccgcg agcgcctggc cctggcccag aagctgatgg
      301 ccgagaccag cgtcagcctc aacgagaagg cacgccgcgc gcagcacgcc gagatcgagg
      361 ccaagcaact ggcgctggag aacgccaagc gcaaggccaa gggcgaggaa ctgctcaagg
      421 aaatcaagga agaggacgaa gacgcgccgc cggtcgagcc cgagaagacc aagcccgagg
      481 acgatgccta tctcaccgag agcggacaca tcctgctcga ctacctcggc ctcgaagcca
      541 cggtggccaa gcattaagcc gtaatcaaag cgtcatcgtt ctgtcgtgaa atagggccgg
      601 tagcgatacc ggcccttttc ttttggcaga cgagacaccc catgaccgcc accgagcagt
      661 tgagcgcact ggactccatc ctcgctcacg gcgatttgca cagtctgttc cagcccatca
      721 tcagcctctc cgagcgtcgc gtgctcggct acgaggcgct cacccgcggg ccatccaaca
      781 gttcgctaca cgcccccatc gccctgttca gcgtggcgcg caatgccggc cgcctgagcg
      841 aactcgagct cgccgcgcgc aagtgcgcat tcggccgctt ccgcgaccag cagctcgacg
      901 gcaagctgtt cctcaacgtc tcgcccgagt cgctgctgga ggccagccac cagccggggc
      961 gcaccctgcg cctgctgcag gagttcggca tcagtcccga tcgggtggtg atcgagctca
     1021 ccgaacaggc gcccatcgaa gacttcgagc tgctcgatac cgccctgcac cactaccgcg
     1081 ccatgggctt ctccatcgcc ctggacgacc tcggcgccgg ctattccagc ctgcgtctgt
     1141 ggtccgaact gcgcccggac tatgtgaaga tcgaccgcca cttcatcgac ggcatccacc
     1201 aggacgcggt caagcgcgag ttcgtcgatt cgatcctgaa gatggccaag gcctcccgcg
     1261 cccaggtgat cgccgagggc atcgagctcg ccgaagaact gtcaaccctg atcgagatgg
     1321 gcgtcgacct ggtgcagggt tatctgctct gccgtcccca ggaacagccg ccgcgcgatg
     1381 cggcgaagct gctgccccgg ctggacgttc ccagtgcgcc gctcggcgag gaaggcggcg
     1441 acctctccgc cctgctcaac gaacaacagg ccgtctccag cgacacgccc atcgccgtag
     1501 ttctggaagc cttccgcgcc caggccaacc tcaattcgct ggcggtcctg gat
//
LOCUS       DATIHC010000885         2463 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_1752, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000885 DATIHC010000000
VERSION     DATIHC010000885.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2463
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1752"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..615)
                     /gene="htpX"
                     /locus_tag="VLF16_14780"
     CDS             complement(<1..615)
                     /gene="htpX"
                     /locus_tag="VLF16_14780"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HSX72193.1"
                     /translation="MMRIVLFLATNLAVLLIASVTLKLLGVDRFTGQNYGSLLAFCAV
                     FGFAGSFISLFLSKWMAKMSTGTEIITQPRTRHEQWLLQTVEELSRDAGIKMPEVGIF
                     PAYESNAFATGWNKNDALVAVSQGLLERFSPDEVKAVLAHEIGHVANGDMVTLAMIQG
                     VVNTFVMFFARIFGNFVDRVILKNEGEGHGIGYIIATIFAELVLG"
     gene            complement(704..1156)
                     /locus_tag="VLF16_14785"
     CDS             complement(704..1156)
                     /locus_tag="VLF16_14785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003240883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72194.1"
                     /translation="MDLQIDEFYKDAASGMLALYQAFPRKVALYVEDLIGREEPDEFG
                     LPSKRHQACLGALLWLAEEGYIRFDSTIAYDALDQAVLTEKGFMRLSRAIPHALPQGD
                     ASPPSVRRVHGTLAWQLREALGQHNSEKVARLTRLLFESALSPSSDIV"
     gene            complement(1173..2384)
                     /locus_tag="VLF16_14790"
     CDS             complement(1173..2384)
                     /locus_tag="VLF16_14790"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HSX72195.1"
                     /translation="MQVSKSNKLANVCYDIRGPVLKHAKRLEEEGHRILKLNIGNPAP
                     FGFEAPEEILQDVIRNLPTAQGYSDSKGLFSARKAVMQYYQQKQVEGVGIEDIYLGNG
                     VSELIVMAMQALLNNGDEVLIPAPDYPLWTAAVALSGGKPVHYLCDEQAGWFPDLADI
                     KAKISSNTKAIVLINPNNPTGAVYSKEVLEGIVELARQHNLVLFSDEIYDKILYDDAQ
                     HICTASLAPDVLCLTFNGLSKSYRVAGFRSGWVAISGPKHKATSYIEGIDILANMRLC
                     ANVPSQHAIQTALGGYQSINDLVLPQGRLLEQRNRTWELLNDIPGVSCVKPMGALYAF
                     PKIDPKVCPIHNDEKFVLDLLLSEKLLVVQGTAFNWPWPDHFRVVTLPRVDDLEQAIG
                     RIGNFLKSYRQ"
BASE COUNT          421 a          698 c          867 g          477 t
ORIGIN      
        1 gcccagtacc agctccgcga agatggtcgc gatgatgtaa ccgatgccgt gaccttcgcc
       61 ctcgttcttc aggatcacgc ggtcgacgaa gttgccgaag atgcgcgcga agaacatcac
      121 gaaggtgttc accacgccct ggatcatggc cagggtcacc atgtcgccgt tggccacgtg
      181 gccgatctcg tgggccagca cggccttcac ttcgtcgggg gagaagcgct ccagcagacc
      241 ctggctgacg gcgaccaggg cgtcgttctt gttccagccg gtggcgaagg cgttggattc
      301 gtaggcgggg aagatgccga cctccggcat cttgatgccg gcgtcgcggg acagctcttc
      361 gacggtctgc agcagccatt gctcatgacg ggtgcgcggc tgggtgatga tctcggtgcc
      421 ggtgctcatc ttcgccatcc acttggagag gaacagcgag atgaaggaac cggcgaagcc
      481 gaatacggca cagaaggcca gcaggctgcc gtagttctgg ccggtgaaac gatcgacccc
      541 gagcagtttc agggtgacgc tggcgatcag cagtaccgcc aggttggtgg ccaggaacaa
      601 cacgatgcgc atcatggtag gaagcttctc ctcaggcgag agacggtcta agtatgcgag
      661 ctatataagg ttgggccgac gcgccttcaa ccgaggcact atttcaaact atgtcgcttg
      721 aggggctcag ggcgctttcg aagagcaggc gggtgaggcg cgcgaccttc tcgctgttgt
      781 gctggccgag ggcctcgcgc agctgccagg cgagggtgcc gtgtacgcga cgcacgctgg
      841 gcggcgaggc atcgccctgg ggcagggcat ggggaatggc gcgggaaagg cgcatgaagc
      901 ccttctcggt gagcactgcc tggtcgaggg cgtcgtaggc gatggtcgag tcgaagcgga
      961 tgtagccttc ctcggccagc cacagcaggg cacccaggca ggcctggtgg cgtttgctgg
     1021 gcaggccaaa ttcgtcgggt tcctcgcggc cgatcaggtc ttccacatac agcgccactt
     1081 tgcgcgggaa agcctggtag agcgccagca tgccgctggc ggcatccttg tagaactcgt
     1141 cgatctgcag gtccatggcc ggctgccttg cgttattggc ggtaggactt gaggaagttg
     1201 ccgatgcggc cgatggcctg ttccagatcg tcgacgcggg gcagggtgac cacgcggaag
     1261 tgatccggcc acggccagtt gaaggcggtg ccctggacga cgagcagctt ctcggagagc
     1321 agcaggtcga ggacgaactt ctcgtcgttg tggatcgggc agaccttggg gtcgatcttc
     1381 gggaaggcgt acagcgcgcc catcggcttg acgcagctaa cgccggggat gtcgttgagc
     1441 agttcccagg tgcggttgcg ctgctccagc aggcggcctt gcggcagcac caggtcgttg
     1501 atgctctggt agccgccgag ggcggtctgg atcgcatgct ggctcggcac gttggcgcac
     1561 aggcgcatgt tggccaggat gtcgatgcct tcgatgtagc tggtggcctt gtgcttgggg
     1621 ccggagatgg cgacccagcc ggagcggaag ccggccacgc ggtaggactt ggacagaccg
     1681 ttgaaggtca ggcacagcac gtccggcgcc agggaggcgg tgcagatgtg ctgggcgtcg
     1741 tcgtagagga tcttgtcgta gatctcgtcg gagaacagca ccaggttgtg ctggcgcgcc
     1801 agttcgacga tgccttccag cacttccttg gaatatacgg cgccggtcgg gttgttcggg
     1861 ttgatcagca cgatggcctt ggtgttgctg ctgatcttgg ccttgatgtc ggcgaggtcg
     1921 gggaaccagc cggcctgctc gtcgcacagg taatgcaccg gcttgccgcc ggagagggcg
     1981 acagcggcgg tccacagcgg gtaatcgggc gccgggatca gcacctcgtc accgttgttg
     2041 agcagcgcct gcatggccat cacgatcagc tcggagacgc cgttgccgag gtagatgtcc
     2101 tcgatgccga cgccttccac ctgcttctgc tggtaatact gcatcaccgc cttgcgcgcg
     2161 ctgaacaggc ccttggagtc gctgtagcct tgcgcggtgg gcaggttgcg gatcacgtcc
     2221 tggaggatct cctccggggc ttcgaaaccg aacggcgccg ggttgccgat gttcagcttg
     2281 aggatgcgat ggccttcctc ttccaggcgt ttggcgtgct tgagcaccgg cccgcggatg
     2341 tcgtagcaga cgttggcgag cttgttcgat ttgctgacct gcatgatgct gtatgtcccg
     2401 atgcgaatcg ccgcgctgta atgcggcggc cagactggcg tccaaagagg gacgcatgat
     2461 acg
//
LOCUS       DATIHC010000886         1530 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_1755, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000886 DATIHC010000000
VERSION     DATIHC010000886.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1755"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..823
                     /gene="lipA"
                     /locus_tag="VLF16_14795"
     CDS             <1..823
                     /gene="lipA"
                     /locus_tag="VLF16_14795"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017675502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016992 - lipoate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HSX72196.1"
                     /translation="CPNMGECWSNGTATIMLMGSVCTRACRFCAVDTGNPNGWLDLEE
                     PQNTAKSVELMGLRYIVLTSVDRDDLPDGGAAHYAACVQAIKANTPQVVVEALTPDFD
                     GDHEAIARVVDSGLEVFAQNVETVKRLTHVVRDPRAGYEKTLKVLEHAKRHRPTVITK
                     TSLMLGLGETDEEIIETMDDLRAIGVDILTLGQYLQPTRNHLKVQRWVSPEEFNRFRD
                     IGLEKGFMEVAAGPLVRSSYRADRVFEKNNLGLAAPVPVPGQQQDDSLIPALNLN"
     gene            complement(896..1513)
                     /gene="lipB"
                     /locus_tag="VLF16_14800"
     CDS             complement(896..1513)
                     /gene="lipB"
                     /locus_tag="VLF16_14800"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003240206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033819 - lipoyl(octanoyl) transferase
                     activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HSX72197.1"
                     /translation="MAELVVRHLGLAEYLPTLEAMRSFTAERDENTPDEIWLLQHPRV
                     FTQGQAGKAEHLLAPGDIPVVQVERGGQVTYHGPGQLVAYLMLDLRRQKLGVRELVTA
                     MERALVDVLAGYGIEAAPKADAPGVYVAGDKIASLGLRVRNGCSFHGLALNVDMDMSP
                     FQRINPCGYAGLKMIQLKDLLEAPPALDEVAQRLEHALRERLGYR"
BASE COUNT          273 a          532 c          490 g          235 t
ORIGIN      
        1 ctgcccgaac atgggcgagt gctggtccaa cggtaccgcc accatcatgc tgatgggctc
       61 ggtatgcacc cgcgcctgcc gcttctgcgc cgtggacacc ggcaacccga atggctggct
      121 ggacctggaa gagccgcaga acaccgccaa gtcggtggag ctgatgggcc tgcgctacat
      181 cgtcctgacc tcagtggacc gcgatgacct gcccgatggc ggcgccgcgc actacgccgc
      241 ctgcgtgcag gcgatcaagg ccaatacacc gcaggtggtg gtggaagcgc tgacgccgga
      301 cttcgacggc gaccacgagg ccatcgcccg cgtggtggat tccggcctgg aggtgttcgc
      361 gcagaacgtc gagacggtca agcgcctcac ccacgtggta cgcgatcccc gcgccggcta
      421 cgagaagacc ctcaaggtgc tggagcacgc caagcgccat cgccccacgg tgatcaccaa
      481 gaccagcctg atgctgggcc tgggcgagac cgacgaggaa atcatcgaga ccatggatga
      541 cctgcgcgcc atcggcgtgg atatcctcac cctcggccag tacctgcagc ccacgcgcaa
      601 tcacctgaag gtgcagcgct gggtcagccc cgaggagttc aaccgcttcc gcgacatcgg
      661 cctggaaaaa ggcttcatgg aagtcgccgc cggcccgctg gtgcgttcca gctaccgggc
      721 cgaccgggtg ttcgagaaga acaacctggg cctggccgcc cccgtcccgg tacccggcca
      781 gcagcaggac gacagcctga ttccggcgct caatctgaac tgagcctcag cctggaaaca
      841 gaaaaggccc tgtggcatcc gccccagggc cttttgcttg gcgccgatct caacctcagc
      901 ggtaacccag acgctcgcgc agggcgtgct ccaggcgctg cgccacctcg tcgagcgcgg
      961 gcggcgcctc gagcaggtcc ttgagctgga tcatcttcag gccggcataa ccacagggat
     1021 tgatgcgctg gaacggcgac atgtccatgt cgacgttcag cgccaggccg tggaacgagc
     1081 agccattgcg tacccgcagg cccagcgagg cgatcttgtc gccggcgacg tagacgcccg
     1141 gggcgtcggc cttgggcgcc gcctcgattc cgtagccggc cagcacgtcg accagcgccc
     1201 gctccatggc agtcaccagc tcgcgcacgc ccagtttctg ccggcgcaga tcgagcatca
     1261 ggtaggccac cagctgtccg ggaccgtgat aggtgacctg gccaccgcgc tcgacctgta
     1321 ccaccggaat gtcgccgggc gccagcaggt gctccgcctt gccggcctgg ccctgggtga
     1381 acacccgcgg gtgctgcagc agccagatct catcgggcgt gttttcgtcg cgctcggcgg
     1441 tgaagctgcg catggcttcc agggtcggca ggtactccgc caatcccagg tgacgcacga
     1501 ccagctcggc cacttagagc accatgtgta
//
LOCUS       DATIHC010000887         3415 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17927, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000887 DATIHC010000000
VERSION     DATIHC010000887.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3415
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17927"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            161..721
                     /locus_tag="VLF16_14805"
     CDS             161..721
                     /locus_tag="VLF16_14805"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013792917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HSX72198.1"
                     /translation="MSNVHRVAVLVGSLRKASINRKLAQTLAELAPPSLQLEIVEIGD
                     LPLYNEDIDVTPPPAPYSAFRDSLKQADAVLFVTPEYNRSVPAPMKNAIDVGSRPYGQ
                     SVFSGKPAAVISASPGAIGGFGANHHLRQSLVFLDMPVLQQPESYLGGAGSFFDEAGQ
                     PSDSIKGFLQKFIDTFARWIETHNRA"
     gene            852..2138
                     /gene="egtB"
                     /locus_tag="VLF16_14810"
     CDS             852..2138
                     /gene="egtB"
                     /locus_tag="VLF16_14810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ergothioneine biosynthesis protein EgtB"
                     /protein_id="HSX72199.1"
                     /translation="MPNRARRTDTSLAELEHLLGRYHRVRAATERLCEPLEREDYVIQ
                     SMPDVSPPKWHLAHVTWFFEAFILQPFLPGYRPLDARYDHLFNSYYQTHGTPFERTRR
                     GLLSRPTVCEVYAYRSHVDLAMEQLLTHLGADSADEVLRRVELGLEHEQQHQELLLMD
                     IKHILAQNPLRPAYRNDLKPAAAAPAAPLRWLGYPAGVRHVGHAGDDFAFDCERPRHR
                     TFVDAFQLASRPVSNGEYLDFIRDGGYRNIALWLSDGWDHIQRAGWQAPLYWQREGDD
                     WLELTLGGPRDLDLDAPVCHLSYFEAEAFAAWAQARLPREEEWEVAAQDEPLWGNFVE
                     NDHLQPVAGGAGEGLQQLYGDVWEWTASAFRPYPGFRPLPGSLGEYNGKFMSGQMVLR
                     GGSCVTPEDHVRPTYRNFFYPTMRWQFAGLRLAKEV"
     gene            2142..3104
                     /gene="egtD"
                     /locus_tag="VLF16_14815"
     CDS             2142..3104
                     /gene="egtD"
                     /locus_tag="VLF16_14815"
                     /EC_number="2.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017675738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030745 - dimethylhistidine
                     N-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-histidine N(alpha)-methyltransferase"
                     /protein_id="HSX72200.1"
                     /translation="MALAIRVHEQSLSPDQAALRDEALLGFAASPKSMSPKFFYDHAG
                     SQLFELICRQPEYYPTRTEETILRLAAANIAALAGRNVSLIELGSGASRKIRLLLEAL
                     RPARYLGIDISREFLHASTHRLAADYRWLDVHALCADFSQPLKLPAEALGGQPLAFFP
                     GSSIGNFDPEQARAFLRNLHQALPVGSGLLIGVDLVKDRAVLERAYNDEAGVTALFNL
                     NLLERIRRELDSDIDQRRFQHRAFYNEAESRIEMHLVSPQAQQVRIENRVFDFAAGES
                     LHTENSYKYTPASFRELAADCGFASAAMWRDPAQLFSVHFLRRE"
     gene            3176..>3415
                     /locus_tag="VLF16_14820"
     CDS             3176..>3415
                     /locus_tag="VLF16_14820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016704092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HSX72201.1"
                     /translation="MSTMTLFHSPASPFVRKVMVLLHETGQAERVALHEVQLSPVAPH
                     PAVIEGNPAGKIPALRLADGSVLHDSRVILDYLDSQ"
BASE COUNT          539 a         1302 c         1077 g          497 t
ORIGIN      
        1 gccgtggcct actctccgcc cgcgcgtggc gcgggtcaat cctcgcacgc tgcggccagt
       61 cgccgcattc ggctccaggc agcgagacag agcggccggg acaatccagc gaagcgcact
      121 atagttgctg actccccttt ccctctcgca aggagttccc atgagcaacg tccaccgtgt
      181 cgccgtgttg gtcggcagcc tgcgcaaggc ctcgatcaac cgcaagctgg cgcagaccct
      241 ggccgagctg gcgccgccgt cgctgcaact ggagatcgtc gagatcggcg acctgccgct
      301 gtacaacgag gacatcgacg tgacgccgcc gcccgcgccc tacagcgcct ttcgcgacag
      361 tctgaagcag gccgatgccg tgctcttcgt caccccggag tacaaccgct cggtgccggc
      421 gccgatgaag aacgccatcg acgtgggctc gcggccctac ggccagagcg tcttcagcgg
      481 caagccggcg gccgtgatca gcgcctcgcc gggcgccatc ggcggcttcg gcgccaatca
      541 ccacctgcgc cagtcgctgg tgttcctcga catgccggtg ctgcagcagc cggaatccta
      601 cctgggcggc gccggcagct tcttcgacga ggccggccag cccagcgaca gcatcaaggg
      661 cttcctgcag aagttcatcg ataccttcgc ccgctggatc gagacccaca accgggcctg
      721 agcccgctcg gccgggtcgc ccgacccggc tccatcgacg ggcggcgaaa tccgtcggaa
      781 cctttgccgc cttcgtccgg tccgtcctaa aacccgtcgc gctgccgcga cgccagcaca
      841 ggacgcgcga catgccgaac cgggcccgca ggaccgacac ctcactcgcc gaactcgaac
      901 acctgctggg ccgctatcac cgcgtgcgtg ccgccaccga gcgcctctgc gagccgttgg
      961 agcgcgagga ctacgtgatc cagagcatgc ccgacgtgag cccgccgaag tggcatctgg
     1021 cccacgtcac ctggttcttc gaggccttca tcctgcagcc cttcctgccc ggctaccgac
     1081 cgctggatgc gcgctacgac cacctcttca actcctatta ccagacccac ggcacgccct
     1141 tcgagcgcac ccgccgcggg ctgctgtcgc ggccgaccgt gtgcgaggtc tacgcctacc
     1201 gcagccacgt cgacctggcc atggagcagc tgctgaccca cctcggcgcc gacagcgccg
     1261 acgaggtgct gcggcgcgtc gagctgggcc tggagcacga gcagcagcac caggagctgc
     1321 tgctgatgga catcaagcac atcctcgcgc agaacccgct gcgcccggcc taccggaacg
     1381 atctcaagcc cgccgctgcg gcaccggccg caccgctgcg ctggctcggc taccccgccg
     1441 gcgtgcgtca cgtcggccac gccggcgacg acttcgcctt cgactgcgag cgaccacgcc
     1501 accgcacctt cgtcgacgcc ttccagctgg ccagccggcc ggtgagcaac ggcgagtacc
     1561 tcgacttcat ccgcgacgga ggctaccgca acatcgccct gtggctgtcc gacggctggg
     1621 atcacatcca gcgggccggc tggcaggcgc cgctgtactg gcagcgcgag ggcgacgact
     1681 ggctggagct gaccctgggc gggccgcgcg acctggacct cgacgcgccg gtctgccacc
     1741 tgagctactt cgaggccgag gccttcgccg cctgggccca ggcccgcctg ccgcgcgagg
     1801 aggaatggga ggtcgccgcc caggacgaac cgctgtgggg caacttcgtc gagaacgatc
     1861 acctgcagcc ggtcgccggc ggtgcgggcg aggggctgca gcagctctac ggcgacgtct
     1921 gggaatggac cgccagcgcg tttcgcccct accccggctt ccgcccgctg cccggcagcc
     1981 tgggcgagta caacggcaag ttcatgtccg ggcagatggt cctgcgcggc ggcagctgcg
     2041 tcacccccga agaccacgtg cgccccacct accgcaactt cttctacccc accatgcgct
     2101 ggcagttcgc cggcctgcgc ctggccaagg aggtctgacc catggcattg gcaatccgcg
     2161 tccacgaaca gtccctgagc cccgatcagg cggccctacg cgacgaggcc ctgctgggct
     2221 tcgccgccag cccgaaatcc atgtcgccga agttcttcta cgatcacgcc ggctcccagc
     2281 tgttcgagct gatctgccgc cagcccgagt actacccgac ccgcaccgag gaaaccatcc
     2341 tgcgcctggc ggcggccaac atcgccgcgc tggcggggcg caacgtcagc ctgatcgaac
     2401 tgggcagcgg cgccagccgc aagatccgcc tgctgctgga ggcgctgcgc ccggcgcgct
     2461 acctgggcat cgacatctcc cgcgaattcc tccacgccag cacccatcgc ctggccgccg
     2521 actaccgctg gctggacgtg cacgcgctgt gcgccgactt cagccagccg ctgaagctgc
     2581 cggccgaggc gctgggcggg cagccgctgg ccttcttccc cggctcgagc atcggcaact
     2641 tcgacccgga gcaggcccgc gccttcctgc gcaacctgca ccaggcgctg ccggtcggca
     2701 gcggcctgct gatcggcgtc gatctggtca aggaccgtgc ggtgctggag cgcgcctaca
     2761 acgacgaggc cggcgtgacc gcgctgttca acctcaacct gctggagcgc atccgccgcg
     2821 agctggacag cgacatcgac cagcgccgct tccagcaccg cgcgttctac aacgaggccg
     2881 aatcgcgcat cgagatgcac ctggtcagcc cgcaggcgca gcaggtgcgc atcgagaacc
     2941 gcgtgttcga cttcgccgcc ggcgagagcc tgcacaccga gaactcctac aagtacaccc
     3001 cggccagctt ccgcgagctg gcagccgact gcggcttcgc ctcggcggcc atgtggcgcg
     3061 accccgcgca gctgttcagc gtccacttcc tgcgccgcga ataggcggcg ccggggttgc
     3121 cagatcggcg cgcggctgca acgctcggac gatattgccg ccgcgaggac cgaccatgag
     3181 caccatgacc ctgttccact cccccgcttc gccgttcgtg cgcaaggtga tggttctgct
     3241 ccacgagacg gggcaggccg agcgggtggc tctgcacgag gtgcagctgt cgccggtcgc
     3301 gccccatccc gcggtgatcg agggcaatcc ggccggcaag atccccgccc tgcgcctggc
     3361 cgacggcagc gtgctgcacg acagccgggt gatcctcgac tacctcgaca gccag
//
LOCUS       DATIHC010000888         1681 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_15645, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000888 DATIHC010000000
VERSION     DATIHC010000888.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1681
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15645"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1561)
                     /gene="argS"
                     /locus_tag="VLF16_14825"
     CDS             complement(<1..1561)
                     /gene="argS"
                     /locus_tag="VLF16_14825"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HSX72202.1"
                     /translation="MKDTIRHLIQQALTRLTAEGVLPEGLSPAIQVENTKDKSHGDFA
                     SNIAMILAKPAGMKPRDLAEKLIAALPVDAGVSKVEIAGPGFLNFFQNSDALAERLEA
                     ALADAKLGVRKNGPAQRVVVDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDSVIR
                     QNHVGDWGTQFGMLLAYIMEQPKGFNSPELADLETFYRAAKKRFDDSAEFADHARNLV
                     VQLQAGDAECLRLWTQFNEISLGHAQEIYDRLNVKLTRADVKGESAYNDDLANVVADL
                     AAKGLLTEDNGAQCVFMDEFKNAEGNPLPLIVQKAGGGYLYATTDLAATRYRASVLKA
                     DRALYFVDQRQALHFQMVFAAARLAGFVPASMELEHMGFGTMNGPDGRPFKTRDGGTV
                     KLVELLDEAEQRAYALVKGKNPELSDDELREIARVVGIASVKYADLSKHRTSDYSFNF
                     ELMLSFEGNTAPYLLYAYTRVASVFRKLGKGIDEIGGRIVLVADQEQALGAKLAQFNE
                     LLASVAEKGTPH"
BASE COUNT          250 a          516 c          596 g          319 t
ORIGIN      
        1 gatgtggggt gcccttctcg gcgacgctgg cgagcagctc gttgaactgc gcgagctttg
       61 cgcccagggc ctgctcctga tcggcgacca ggacgatcct gccgccgatc tcgtcgatgc
      121 ccttgcccag cttgcggaac acgctggcca cacgggtgta ggcgtacagc aggtagggcg
      181 cggtgttgcc ctcgaagctg agcatcagct cgaagttgaa gctgtaatcg ctggtgcggt
      241 gcttggacag atcggcgtat ttcaccgagg cgatgccgac cacgcgggcg atctcgcgca
      301 gttcgtcgtc ggacagctcc gggttcttgc ccttgaccag ggcgtaggcg cgctgctcgg
      361 cctcatcgag cagttcgacc agcttcacgg tgccgccgtc gcgggtcttg aacgggcggc
      421 cgtccgggcc gttcatggtg ccgaagccca tgtgctccag ctccatgctg gccggcacga
      481 agccggccag gcgcgcggcg gcgaagacca tctggaagtg cagggcctgg cgctggtcga
      541 cgaagtacag ggcgcggtcg gccttcagca cgctggcgcg gtaacgggtg gcagccaggt
      601 cggtggtggc gtacaggtag ccgccgccgg ccttctgcac gatcagcggc agcgggttgc
      661 cttccgcgtt cttgaactcg tccatgaaga cgcactgggc gccgttgtcc tcggtcagca
      721 ggcccttggc cgcgaggtcg gcgaccacgt tggcgaggtc gtcgttgtag gcgctctcgc
      781 ccttgacgtc ggcgcgggtc agtttgacgt ttagacggtc atagatttcc tgggcatggc
      841 ccaaggagat ttcgttgaac tgagtccaga ggcgcaggca ctccgcgtcg ccagcttgca
      901 gctggaccac cagattgcgg gcgtggtcgg cgaactcggc tgagtcgtcg aagcgcttct
      961 tggcggcgcg gtagaaggtt tctagatcgg ccagctctgg agagttaaag cccttcggct
     1021 gctccatgat gtaggccagc agcatgccga actgggtgcc ccagtcgccg acgtggttct
     1081 ggcggatgac gctgtcgccg aggaactcca gcacgcgcgc cacgccgtca ccgatgatgg
     1141 tcgagcgcag gtggccgacg tgcatctcct tggccaggtt cggcgccgac agatcgacca
     1201 ccacacgctg cgccgggcca ttcttgcgca cgccgagttt ggcgtcggcc agcgctgcct
     1261 cgaggcgctc ggccagggcg tcgctgttct ggaagaagtt gaggaagccg gggccggcga
     1321 tctccacctt gctgacgccg gcgtcgaccg gcagcgcggc aatcagcttc tcggccaggt
     1381 cgcgcggctt catgccggcc ggcttggcca gaatcatggc gatgttgctg gcgaaatcgc
     1441 cgtgactctt gtccttggtg ttctccacct ggatcgccgg gctcaggcct tcgggcagca
     1501 cgccctcggc ggtcaggcgg gtcagggctt gctggatcag gtggcgaatc gtgtctttca
     1561 tggtctgctc ggtcggccgt ggctggtcga aaactgcgca ttatagaggc aggcatcggc
     1621 cgcaggcgag cacgtagggt gcggcgtgcg cggcggagag ggccgctcag aacaggtcga
     1681 t
//
LOCUS       DATIHC010000889         2815 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_38822, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000889 DATIHC010000000
VERSION     DATIHC010000889.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2815)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2815)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2815
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38822"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(134..1108)
                     /locus_tag="VLF16_14830"
     CDS             complement(134..1108)
                     /locus_tag="VLF16_14830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014596263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A deacylase LpxR family protein"
                     /protein_id="HSX72203.1"
                     /translation="MKAAAFASLVPALLLTGVCHADVLSFKVENDVFSGGRDGHYTNG
                     IEGFRAFEPEAGHWTRNLAGVVPGWTAEDLTFSAYRFGHQMYTPEEIEREELQEDDRP
                     YAGLLFGGVTLFAAQQLDGHRETDTLTVDVGLVGQGAGGKRLQRAVHDVTGSDAPEGW
                     DHQLENELFLNVGYEKRWWQQHSLGGLELEYGPSVGGALGNLYSYLSTGAGVRLGHGL
                     SRSLSQPLVTPSPSGVPYFKPDAGFGWFVFANLEGRYMAHNMLLDGNTFRDSHSVDRE
                     PLVGDAQLGLALTWDRWQLSFANVWRSKEFEGQNEHDQFGSLSLSTWL"
     gene            1538..>2815
                     /locus_tag="VLF16_14835"
     CDS             1538..>2815
                     /locus_tag="VLF16_14835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015103 - inorganic anion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HSX72204.1"
                     /translation="MLQTIKQNWFSNLRGDVLAGLVVALALIPEAIAFSIIAGVDPAV
                     GLYASFVIAVTIAFVGGRPGMISAATGAMALLMVTLVKNHGLEYLLAATLLCGVLQIL
                     AGFLRLGELMRFVSRSVVTGFVNALAILIFMAQLPELTNVTWHVYAMTAAGLGIIYLF
                     PYVPKLGKVIPSPLVCILTLTAVAMVLGLDIRTVGDMGQLPDTLPVFLWPEVPLTFET
                     LAIIFPYSAALAVVGLLESMMTATIVDDLTDTPSDKNRECKGQGVANIAAGLMGGMAG
                     CAMIGQSIINVKSGGRTRLSTFIAGAVLLLMVVFLSDWVGQIPMAALVAVMIMVSIGT
                     FSWDSLRNLRSYPLSTNIVMIATVVVVVLTHNLAYGVLVGVLLAALFFANKIGHYLHV
                     GSELGASGEHRTYRVTGQVFFTSAEKFVAAFDFR"
BASE COUNT          424 a          972 c          919 g          500 t
ORIGIN      
        1 cgccgatgct atccgcggcc ctccggacgc aagtaataca acagtacgat gcgggccatg
       61 ccgttatgga atggccggcg ccgaaacgaa gagtgcgccc gcaggcgcac tctggatcga
      121 ccgggcgtga aggtcacagc caggtggaca ggctcagcga accgaactgg tcgtgctcgt
      181 tctggccctc gaactccttg ctgcgccaga cgttggcgaa cgacagctgc cagcggtccc
      241 aggtcagtgc caggcccagc tgggcgtcgc ctaccagggg ctcgcggtcg accgagtggc
      301 tgtcgcggaa agtgttgccg tccagcagca tgttgtgggc catgtagcgg ccctcgaggt
      361 tggcgaagac gaaccagccg aagccggcat cgggcttgaa gtagggcacg ccgctgggcg
      421 agggcgtgac cagcggctgg ctgaggctgc gcgacaggcc gtggcccagg cgcacgccgg
      481 cgccggtcga caggtagctg tagaggttgc cgagggcgcc gccgacgctg gggccgtatt
      541 ccagctccag gccgccgagg gagtgctgct gccaccagcg cttctcgtag ccgacgttga
      601 ggaacagctc gttttccagc tggtggtccc agccctccgg ggcgtcgctg ccggtcacgt
      661 cgtgcacggc gcgctgcagg cgcttgccgc cggcgccctg gcccaccagg ccgacgtcga
      721 cggtgagggt atcggtctcc cggtggccgt ccagctgctg ggcggcgaac agggtgacgc
      781 cgccgaacag caggccggcg taggggcggt cgtcttcctg cagttcttcg cgctcgattt
      841 cctcgggcgt gtacatctgg tggccgaagc ggtaggcgga gaaggtcagg tcttcagccg
      901 tccagccggg taccacgccg gccaggttgc gggtccagtg cccggcctcc ggctcgaagg
      961 cgcggaagcc ctcgatgccg ttggtgtagt ggccatcccg gccgccggag aagacatcgt
     1021 tctccacctt gaacgacaac acatcggcgt ggcagacgcc ggtcaacagc agagcgggga
     1081 cgagcgaagc gaaggctgcg gctttcatgc gaggctcccg aacgtatgag tagtggcttc
     1141 ctgtgcgtcg cagggcgaca cgcggtgtca gatagccata caagcgaagc gttcagggaa
     1201 aatttacaac tgtgcaccga acgtcgggca attcgcggtc gcacgtggcg cagcgctgtg
     1261 gtaccttgcc cgccgacttc cgcttaccga ccccgtcgac agcacgatcc ttcagcactc
     1321 cgcctggctg cccacgccgc catagcgcac cgccccctcc tgccgagccc gcgctcctgc
     1381 cgagcccgcg ctcctgcctg cggactcgcg cctgcgtgtc cgcagcccgg ctgccgtcac
     1441 cacacctgat ccgtaatacc cacaactcga accgacgtat cccggcacgc ctccgctgag
     1501 gcctggtgtc ggcgcgtcct ttgccttgga tagtccgatg ttgcagacaa tcaaacagaa
     1561 ctggttctcg aacctgcgcg gcgatgtgct ggcggggctc gtggtggccc tcgcgctgat
     1621 cccggaggcc atcgccttct ccatcatcgc cggggttgat cccgcggtcg gcctgtacgc
     1681 cagcttcgtc atcgccgtga ccatcgcctt cgtcggcggc cggccgggaa tgatctccgc
     1741 cgccaccggg gccatggccc tgctgatggt taccctggtg aagaaccacg gcctggaata
     1801 cctgctggcg gcgaccctgc tgtgcggcgt gctgcagatc ctcgccggct tcctccggct
     1861 gggcgagctg atgcgcttcg tctcgcgctc ggtggtcacc ggcttcgtca acgccctggc
     1921 gatcctgatc ttcatggccc agctgcccga gctgaccaac gtcacctggc acgtctacgc
     1981 catgacggcg gcgggcctcg gcatcatcta cctgttcccc tacgtgccca agctgggcaa
     2041 ggtgatcccc tcgccgctgg tgtgcatcct caccctgacc gccgtggcca tggtgctcgg
     2101 cctggacatc cgcaccgtcg gcgacatggg ccagctgccg gacaccctgc cggtgttcct
     2161 gtggcccgag gtgccgctga ccttcgagac gctggcgatc atcttcccgt attcggccgc
     2221 gctggccgtg gtcggcctgc tcgagtcgat gatgaccgcg accatcgtcg acgacctcac
     2281 cgacaccccc agcgacaaga accgcgagtg caagggccag ggcgtcgcca acatcgccgc
     2341 cggcctgatg ggcggcatgg ccggctgcgc gatgatcggc cagtcgatca tcaacgtgaa
     2401 atccggcggt cgcacccgcc tgtccacctt catcgccggc gccgtgctgc tgctgatggt
     2461 ggtgttcctc agcgactggg tcgggcagat ccccatggcc gcgctggtgg cggtgatgat
     2521 catggtgtcc atcggcacct tcagctggga ctcgctgcgc aacctgcgca gttatcccct
     2581 gtccaccaac atcgtgatga tcgccaccgt ggtggtggtg gtgctgaccc acaacctggc
     2641 ctacggtgtg ctggtcggcg tgctgctggc ggcgctgttc ttcgccaaca agatcggcca
     2701 ttacctgcac gtcggctccg agctcggcgc ctccggcgag caccgcacct accgggtgac
     2761 cggccaggtg ttcttcactt ccgccgagaa gttcgtcgcc gccttcgact tccgc
//
LOCUS       DATIHC010000890         3320 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_22584, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000890 DATIHC010000000
VERSION     DATIHC010000890.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3320
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22584"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..196)
                     /locus_tag="VLF16_14840"
     CDS             complement(<1..196)
                     /locus_tag="VLF16_14840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF484 family protein"
                     /protein_id="HSX72205.1"
                     /translation="MSDQDQTPLDAEAVAAYLRQHPEFFVDHEELIPELRIPHQPGTT
                     VSLVERQVKLLRERNIEMRHR"
     gene            complement(193..1023)
                     /gene="dapF"
                     /locus_tag="VLF16_14845"
     CDS             complement(193..1023)
                     /gene="dapF"
                     /locus_tag="VLF16_14845"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HSX72206.1"
                     /translation="MLLRFTKMHGLGNDFMVLDLISQHAHIQPKHAKAWGDRHTGIGF
                     DQLLLVEAPTHPDVDFRYRIFNSDGSEVEQCGNGARCFARFVVDKRLTVKKQIRVETK
                     GGLIELNLRADGQVTVDMGAPRLVPEQIPFQADAEALSYEVEVDGQRVELAAVSMGNP
                     HAVLRVADVDQAPVHQLGAKLEHHPRFPQRVNVGFLQIVDRKQARLRVWERGAGETQA
                     CGTGACAAAVAAIRQGWMDSPLQLELPGGKLSIEWAGPGQPVMMTGPAVRVYEGQVRL
                     "
     gene            complement(1034..2281)
                     /gene="lysA"
                     /locus_tag="VLF16_14850"
     CDS             complement(1034..2281)
                     /gene="lysA"
                     /locus_tag="VLF16_14850"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HSX72207.1"
                     /translation="MQAFTNRDGQLFAEGVALSAIAERFGTPTYVYSRAHIEAQYRAY
                     ADALAGMPHLVCFAVKANSNLGVLNVLARLGAGFDIVSRGELERVLAAGGEPDRIVFS
                     GVGKTRDDMRRALEVGVHCFNVESVDELERLQVVAAELGKTACISLRVNPDVDAGTHP
                     YISTGLKENKFGIDIEQAPAVYARAAALPNLQIVGVDCHIGSQLTSLPPFLDALDRLL
                     ALIDQLATQDIQIKHLDLGGGLGVQYRDEQPPLAGDYIKAVRERIAGRDLALVFEPGR
                     YIVANAGVLLTRVEYLKHTTHKDFAIIDAAMNDLIRPALYQAWMDVTPVQPRDGEARN
                     YDLVGPICETGDFLAKGRELVLAEGDLLAVRSAGAYGFVMSSNYNTRGRAAEVLVDGE
                     QAHEVRRRETLAELYAGESLLPQ"
     gene            complement(2291..2428)
                     /locus_tag="VLF16_14855"
     CDS             complement(2291..2428)
                     /locus_tag="VLF16_14855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HSX72208.1"
                     /translation="MKRLLLPFIALAVFTAALAGCGQKGPLYLPDDDKTVKERDKDVF
                     L"
     gene            2591..>3320
                     /locus_tag="VLF16_14860"
     CDS             2591..>3320
                     /locus_tag="VLF16_14860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003242381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSX72209.1"
                     /translation="MDAPATLASSVSVAYLQGLLDYLARQGFASDALLAKVHLSPAIL
                     AQRDQRIAVSTYLELLGEGVRLTGDDNLGLHLGEAMRPGYYGVLGYLIMSCATLADAL
                     HRQARYAALVGNLGRVDLDEEPPRAGLEPQVAHSWEPLVREQQRQHSEETLAGWLTFG
                     RWITGLQIPPTEVRFQHPAPADTSEHERIFGCPVLFDQADNALVFPKRLLGTPLGQAD
                     AQLRQLLDAHADRLLGQLNQGHSVL"
BASE COUNT          512 a         1120 c         1155 g          533 t
ORIGIN      
        1 ggcgatggcg catctcgatg ttgcgttcgc gcagcagttt cacctggcgc tcgaccaacg
       61 acaccgtggt gccgggctgg tgcgggatgc gcagttcggg aatcagctcc tcgtggtcga
      121 cgaagaactc cggatgctgg cgcagatagg cggcgacggc ctcggcatcg agcggggtct
      181 gatcctgatc actcatagac ggacttgtcc ttcgtacacg cgaacggcgg gtccggtcat
      241 cataaccggc tgtcccggac ctgcccactc gatggacagc ttgccgcccg gcagctccag
      301 ctgcagcggc gaatccatcc agccctggcg aatggcggcc acggcggcgg cgcaggcgcc
      361 ggtgccgcag gcctgggtct cgccggcgcc gcgttcccac acgcgcaggc gcgcctgctt
      421 gcggtcgacg atctgcagga agccgacatt gacccgttgc ggaaagcgcg ggtgatgctc
      481 cagcttcgcg cccagctggt gcaccggcgc ctggtcgacg tcggcgacgc gcagcacggc
      541 gtgcgggttg cccatggaga cggcggccag ctcgacgcgc tgcccgtcca cctccacctc
      601 gtagctgagc gcctcggcgt cggcctggaa ggggatctgc tcggggacca ggcgcggcgc
      661 gcccatgtcc accgtgacct ggccatccgc gcgcaggttg agctcgatga gaccgccctt
      721 ggtctcgacg cggatctgct tcttcacggt caggcgcttg tccaccacga aacgggcgaa
      781 gcagcgcgcg ccgttgccgc actgttccac ttccgagccg tcggaattga agatgcggta
      841 gcggaagtcc acgtccgggt gggtcggcgc ctccaccagc agcaactggt cgaagccgat
      901 gccggtgtgg cggtcgcccc aggccttggc gtgcttgggc tggatgtgcg cgtgctggct
      961 gatcaggtcg aggaccatga agtcgttgcc gaggccgtgc atcttggtga agcgcaatag
     1021 catgatcgcg ccctcactgc ggcagcaggc tttcgccggc gtagagttcg gccagggtct
     1081 cgcggcgacg cacttcatgg gcctgctcgc cgtccaccag cacctcggcg gcgcggccgc
     1141 gggtgttgta gttggaactc atgacgaagc cgtaggcgcc ggccgagcgc acggccagca
     1201 ggtcgccctc ggccagtacc agctcgcggc ccttggccag gaagtcgccg gtctcgcaga
     1261 tcggtccaac cagatcgtag ttgcgtgcct cgccgtcgcg cggctgcacc ggagtcacgt
     1321 ccatccaggc ctggtacagg gccgggcgga tcaggtcgtt catcgccgca tcgatgatgg
     1381 cgaagtcctt gtgcgtggtg tgcttgaggt attccacgcg ggtcagcagc acgccggcat
     1441 tggccacgat gtagcggccc ggctcgaaca ccagggccag gtcgcgaccg gcaatgcgct
     1501 cgcgcacggc cttgatgtag tcgccggcca gcggcggctg ctcgtcgcgg tactgcacgc
     1561 cgaggccgcc gccgagatcc agatgcttga tctggatgtc ctgggtggcc aactggtcga
     1621 tcagcgccag caggcggtcg agggcgtcga ggaagggcgg caggctggtc agctgcgaac
     1681 cgatgtggca atccacgcca acgatttgca ggttcggcag ggcggcggcg cgggcgtaca
     1741 cggccggcgc ctgctcgatg tcgatgccga acttgttttc cttcaggcca gtggagatgt
     1801 acgggtgggt gccggcatcc acgtccgggt tgacccgcag cgagatgcac gcggtcttgc
     1861 ccagctcagc ggccacgacc tgcaagcgct ccagctcgtc caccgactcg acgttgaagc
     1921 agtgcacgcc cacttcgagg gcccggcgca tgtcatcacg ggtcttgccg acgccggaga
     1981 agacgatccg gtctggctcg ccgccggcgg ccagtacgcg ctcgagttcg ccgcgggaga
     2041 cgatgtcgaa gccggcgccg aggcgcgcca gcacgttcag cacgccgagg ttggagttgg
     2101 ccttgaccgc gaaacagacc agatgcggca tgccggccag ggcgtcggcg taggcgcgat
     2161 actgggcctc gatgtgggcg cgggagtaca cgtaggtggg cgtgccgaag cgttcggcaa
     2221 tggcggacag ggccacgccc tccgcgaaca gttgcccgtc gcggttggta aaggcttgca
     2281 tggaaccccc ttagaggaag acgtctttgt cgcgttcttt gacggtcttg tcgtcgtcgg
     2341 gcaggtacag cgggcctttc tggccacagc cggcgagggc ggcggtgaac acggcgagcg
     2401 cgatgaaggg cagcagcagg cgcttcatgg tggaatcctt gcgaaatcga gaatggtccg
     2461 gagtataccg accccccggc agcttgccta tgcacgcccg gcgggcccgc caggaccgtc
     2521 gcactggcgt ctcgggcttg cccgcgaggg gatgtttgcg gctagcatga agcgaaaaaa
     2581 cggagccccg atggacgccc ccgccactct cgccagctcg gtctcggtcg cctacctgca
     2641 gggcctgctg gactatctcg cccgccaggg tttcgccagc gatgcgctgc tggccaaggt
     2701 gcacctgagc ccggccatcc tcgcccagcg cgaccagcgc atcgccgtca gtacttacct
     2761 ggagctgctc ggcgagggcg tgcggctgac cggcgacgac aacctcggcc tgcacctggg
     2821 cgaagccatg cgccccggct attacggcgt gctcggctac ctgatcatga gctgcgcgac
     2881 cctggctgac gccctgcacc gccaggcccg ctacgccgcg ctggtcggca acctgggccg
     2941 cgtcgacctc gacgaggagc caccgcgcgc gggactggaa ccgcaggtgg cgcacagttg
     3001 ggagccgctg gtgcgcgagc agcagcgcca gcacagcgag gagaccctgg ccggctggct
     3061 gaccttcggc cgctggatca ccgggctgca gatcccgccc accgaggtgc gcttccagca
     3121 tcccgcgccg gccgacacct ccgagcatga gcgcatcttc ggctgcccgg tgctgttcga
     3181 tcaggccgac aacgcgctgg tgttccccaa gcgcctgctg ggcacgccgc tgggccaggc
     3241 cgacgcccag ctgcggcaac tgctcgacgc ccacgccgac cgcctgctcg gccagctcaa
     3301 ccagggccac agcgtgctcg
//
LOCUS       DATIHC010000891         1983 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27396, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000891 DATIHC010000000
VERSION     DATIHC010000891.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1983)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1983)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1983
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27396"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..658)
                     /locus_tag="VLF16_14865"
     CDS             complement(<1..658)
                     /locus_tag="VLF16_14865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72210.1"
                     /translation="MKTRKSPSLIGRLLWSLCLLQAVVLLASLAGMLYSLLDQNYSFI
                     DEVVPDTLTEAVVLEADGPRLDAETLRPLRAEYPGLWAVVADARGRVVRLGATPADFE
                     TMVTILPLLGNSQINALEAQKHLTLRVDVREVAGEPVRIMSGGAAKSDFGRAILQATG
                     ILSLYFLLPMFLFTLIATPLLVLSATRGVKRLARDAAALDISRPDAQLAEESVPREVR
                     P"
     gene            complement(655..1329)
                     /locus_tag="VLF16_14870"
     CDS             complement(655..1329)
                     /locus_tag="VLF16_14870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013789916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSX72211.1"
                     /translation="MRILLVEDDLQMAQALQGALARHGLVVDLVHSMAAAETALRLNV
                     HDLLVLDRGLPDGDGVDFIASARRLMPTLPIVLLTALGEVADRVDGLNEGADDYMVKP
                     VAVDELLARIRAIARRPASVLLPGATLGQLTFDFTAREALVDEQPLALPRRQLLILEA
                     LIYRQGRTVLRESLHEAVYGLEDEIQSNALDAHVSKLRKALKEAEAGVEIVVIRGVGY
                     LLRESR"
     gene            1514..>1983
                     /locus_tag="VLF16_14875"
     CDS             1514..>1983
                     /locus_tag="VLF16_14875"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSX72212.1"
                     /translation="MSKTIVVFGAATGLGTRVARSYGAKGYDVVLVGRQAPPLQALAS
                     ELGREGIYPRTFIGDLTIPEHAAALVRSIRHTLPSLDAIYYGPDQPQPYLPATAVALD
                     TAQEWADLLFLSLVAVVNEVLPEMRARRAGAILVAQSRTADKGTPYLSGPGPAMA"
BASE COUNT          305 a          717 c          690 g          271 t
ORIGIN      
        1 gcggccgcac ttcgcgcggc accgattctt ccgccagctg cgcgtcgggg cgcgagatgt
       61 cgagggcggc ggcgtccctg gccaggcgct tgacgccgcg ggtggcgctg agcaccagca
      121 gcggcgtggc gatcagggtg aacaggaaca tcggcagcag gaagtacagg ctgaggatgc
      181 cggtggcctg caggatcgcc cggccgaagt ccgacttggc cgcgccgccg ctcatgatgc
      241 gcacgggctc gcccgcgacc tcgcgcacat ccacgcgcag ggtcaggtgt ttctgcgcct
      301 ccagcgcgtt gatctgcgaa ttgcccagca gcggcaggat cgtcaccatc gtctcgaaat
      361 ccgccggcgt cgcgcccagg cggacgacac gcccgcgcgc atccgccacc accgcccaca
      421 ggcccgggta ctcggcccgc agtggccgca gcgtctcggc gtcgaggcgc gggccgtcgg
      481 cctcgagaac gacggcctcg gtcagggtat cgggcaccac ctcgtcgatg aacgagtagt
      541 tctggtcgag caggctgtag agcatgccgg ccagcgaggc gagcagcact accgcctgca
      601 gcaggcacag cgaccagagc aggcggccga tcagcgaggg actcttgcgc gtcttcatcg
      661 gctctccctc agcaggtagc cgacgccgcg gatcaccacg atctccacgc cggcctcggc
      721 ctccttcagc gccttgcgca gcttggagac atgggcgtcc agcgcgttgg actggatctc
      781 gtcctccagc ccgtacaccg cctcgtgcag gctctcgcgc agcaccgtgc ggccctgacg
      841 gtagatcagc gcctccagga tcagcagctg ccggcggggc agcgccaggg gctgttcgtc
      901 caccagcgcc tcgcgcgcgg tgaagtcgaa ggtcagctgg ccgagcgtgg cgccgggcaa
      961 cagcaccgag gccgggcggc gggcgatggc gcgaatcctg gccagcagct cgtccaccgc
     1021 gacgggcttg accatgtagt cgtcggcgcc ctcgttgagg ccatccaccc ggtccgccac
     1081 ctcgcccagc gcggtgagca gcacgatggg cagcgtcggc atcaggcgcc gggcgctggc
     1141 gatgaagtcg acgccgtcgc cgtccggcag gccgcggtcg agcaccagca ggtcgtggac
     1201 gttcaggcgc agcgccgtct ccgccgccgc catcgaatgc accagatcca ccaccagtcc
     1261 gtggcgtgcc agcgcaccct gcagggcctg ggccatttgc agatcgtctt cgaccaggag
     1321 gattcgcacg gcggtctcgt cgcggctgtt gaggaggcgg ccatagtacc gaagcgccct
     1381 gttcgccgac gcaatgttga ggcaacgttg cccgcccaag atgggcgccg gccccgaccg
     1441 ggggccaggg agcggaccgc cacacgcggc gagggaccgc cgtgagaccg acgtctatcg
     1501 actggggatg agcatgagca agacgatcgt ggtgttcggg gccgccaccg gcctgggaac
     1561 gcgggtggcg cgcagttatg gcgccaaggg ctatgacgtg gtgctggtcg gccgccaggc
     1621 gccgccgctg caggcgctgg ccagcgaact ggggcgcgag ggcatctacc cgcgcacctt
     1681 catcggcgac ctgaccattc ccgagcacgc ggcggcgctg gtgcgctcga tccgccacac
     1741 cctgccctcg ctcgacgcga tctactacgg ccccgaccag ccccaaccct atttgcccgc
     1801 cacggccgtc gccctcgaca ccgcgcagga atgggccgac ctgctgttcc tcagcctggt
     1861 ggcggtggtc aacgaggtgc tgccggaaat gcgcgcgcgc cgcgccggcg ccatcctggt
     1921 cgcccagagc cgcacggcgg acaagggcac gccctacctc agcggccccg gaccggccat
     1981 ggc
//
LOCUS       DATIHC010000892         2692 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_45845, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000892 DATIHC010000000
VERSION     DATIHC010000892.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2692
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45845"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            229..1755
                     /gene="istA"
                     /locus_tag="VLF16_14880"
     CDS             229..1755
                     /gene="istA"
                     /locus_tag="VLF16_14880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS21 family transposase"
                     /protein_id="HSX72213.1"
                     /translation="MALLSVIRRWHFREHLSIREICRRTGLSRNTIRKYLRLDGVEPK
                     FKVPERPSKLDPFADRLSAWLKTESKKNRKQKRTMKQLHADLMSLGYEGSYNRVAAFA
                     REWRDDRQRELQTTGRGTYVPLAFDPGEAFQFDWSEDWAIIGNERTKLQVAHTKLSYS
                     RAFIVRAYLLQTHEMLFDAHNHAFRVFGGIPGRGIYDNMRTAIDKVGRGKERDVNVRF
                     QAMASHYLFEPEFCNPASGWEKGQVEKNVQDARHRLWQPTPRFPSLDALNDWLEQRCK
                     EFWAQTPHGQMRGSIADIWAEEAPALMPVTRPFDGFVEYTKRVSPTCLVHLERNRYSV
                     PASFANRPVSLRVYPDRVVVAAEGQIVCEHRRVIDRSHDRPGQTIYDWRHYLAVVQRK
                     PGALRNGAPFAELPEAFRALQQYLLKKPGGDREMVDILALVLQHDEQAVLSAVDMALK
                     SGVPTKTHVLNLLHRLVDGKSFTPPTIDAPQALTLTNEPKANVERYDALRKMEARHAS
                     "
     gene            1745..2557
                     /gene="istB"
                     /locus_tag="VLF16_14885"
     CDS             1745..2557
                     /gene="istB"
                     /locus_tag="VLF16_14885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013104582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS21-like element helper ATPase IstB"
                     /protein_id="HSX72214.1"
                     /translation="MRHNPASGAIVIMLRQLKMHGMAQAVGELTEQGSPAFEAAIPIL
                     SQLLKAETAEREVRSTAYQLKTARFPAYRDLNGFDFASSEVNEALVRQLHRCDFLDDA
                     NNIVLVGGPGTGKTHIATAIGVQAIEHHHKRVRFFSTVELVNALEQEKAQGRSGQIAN
                     RLAHSDLVILDELGYLPFSASGGALLFHLLSKLYERTSVIITTNLSFSEWASVFGDAK
                     MTTALLDRLTHHCHILETGNDSFRFKNSSAHEPKTTKEKTRNLTTTADPKHT"
BASE COUNT          572 a          820 c          777 g          523 t
ORIGIN      
        1 ggaaaaacgc gaaccattcg aacacgcagg cgcaccggtc agcactggat tccgttgatc
       61 cgttgtcgcg cgataacctg cttgtagaac aggccgcgct gcttccgagt ggcaactgtt
      121 gatttccact gagaactgac ccggcgtggc ctgatatttc cattgagaat tgacccatgt
      181 tccaaccttc cctcgcatgt tttcagcggg ggctatggag tgatcgacat ggcgttattg
      241 agcgtgatcc gacgctggca ttttcgagag catctatcga tccgggagat ttgccgcagg
      301 accggcttgt cccggaatac catccgcaaa tacctgcgcc tggacggcgt ggagccgaag
      361 ttcaaggttc cggagcggcc gagcaagctt gatccgtttg cagatcggtt gtcggcctgg
      421 ctgaagaccg aatccaagaa gaaccgcaaa cagaagcgga cgatgaagca gttgcatgcc
      481 gatctgatga gcctcggcta tgagggttct tataatcggg tggcggcatt tgcccgggaa
      541 tggcgtgatg atcgtcagag ggaattgcag acgacgggtc gcgggacata tgtgcccctg
      601 gcgttcgatc cgggcgaagc cttccagttt gactggtcgg aagactgggc catcatcggt
      661 aatgagcgca ccaaactgca ggtggcgcac acgaagctga gttacagtcg cgccttcatc
      721 gtgcgggcct atctgctgca gacccacgag atgctcttcg atgcccacaa tcatgcattc
      781 cgcgtgttcg gaggcatccc cggtcgtggc atctacgaca acatgcgcac cgcgatcgac
      841 aaggtcggcc gtggcaaaga gcgtgacgtt aacgtccggt tccaggcgat ggccagccac
      901 tatctgttcg aacccgagtt ctgcaatccg gcttcgggct gggagaaggg acaggtcgag
      961 aagaacgttc aggacgcgcg tcatcgtctg tggcagccaa cgccgcgctt tccatcgctg
     1021 gatgctctga acgactggct cgagcagcgc tgcaaggagt tctgggcaca gaccccgcac
     1081 ggtcaaatgc gtggctctat tgccgacatc tgggcggagg aagcgcccgc gctcatgccc
     1141 gttacccggc cgttcgatgg gtttgtcgaa tacaccaagc gtgtctcacc gacctgcctc
     1201 gtccatctgg agcgcaatcg ctacagcgtc ccggcatcct tcgccaatcg accggtgagc
     1261 ctgcgggtct atccggatcg tgtcgtggtt gctgcggaag gccagatcgt ttgcgagcat
     1321 cgccgcgtca tcgatcgctc tcacgaccga ccgggacaga cgatctacga ctggcggcac
     1381 tatctggcgg tggtgcagcg aaagccaggg gctctacgca atggtgcacc gttcgccgaa
     1441 ctccccgagg cattccgggc cttgcagcaa tacctgctca agaagccggg tggtgaccgc
     1501 gagatggtcg atatcctggc cctcgttctc cagcacgacg aacaggccgt gctgtcggcc
     1561 gtggacatgg cgctgaagtc cggcgttcca accaagaccc atgtgctgaa cctgctgcat
     1621 cgtctcgtcg acggcaaatc cttcacaccg cccaccatcg acgcgcctca ggccctgacg
     1681 ctcaccaacg agcccaaggc caatgtcgaa cgctacgacg cgctcagaaa gatggaggcc
     1741 cgtcatgcgt cataatccgg caagcggcgc gatcgtcatc atgctgcggc aattgaagat
     1801 gcacggcatg gcccaggccg tcggcgagct caccgagcag ggatcgccgg cgtttgaggc
     1861 tgccatcccc atcctgtcgc agctcctcaa ggccgagacg gcggaacgcg aagttcgatc
     1921 gaccgcctat cagctcaaga ccgcacgctt tcctgcctat cgtgacctga acggcttcga
     1981 cttcgccagc agcgaggtca acgaggcgct ggtccgtcag cttcatcgct gcgacttcct
     2041 cgacgatgcc aacaacatcg tcctggtcgg cggccccggc acgggcaaaa cgcatatcgc
     2101 cacggcaatt ggtgtccagg ctatcgagca tcatcacaag cgggttcggt tcttctcgac
     2161 cgtcgaactg gtcaacgcgc tcgagcagga aaaggcacag gggcgttccg gccagatcgc
     2221 caaccgcctg gcgcattccg atctcgtcat ccttgacgaa cttggctacc tgccgttcag
     2281 cgcttcaggc ggggcgctgc tcttccatct gttgagcaag ctctacgagc gaaccagcgt
     2341 catcatcacg acgaacctca gcttcagcga atgggctagc gtgttcggcg acgccaagat
     2401 gaccaccgcg ctattggatc ggctcaccca tcattgccat atcctggaaa ctggcaacga
     2461 cagcttccgc ttcaagaaca gctcggccca tgagcccaaa acgacgaagg agaaaacgag
     2521 gaacttgacc acgaccgcag acccgaaaca tacctaacag gcgggtcaat tctcggtgga
     2581 aacgccgggt cagttctcag tggcaatcaa cagtcagagg ttattttccg gaattttctg
     2641 tcccctgaac tccaatgcaa taatcggccg ggttataact accaaagata ga
//
LOCUS       DATIHC010000893         1850 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_22601, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000893 DATIHC010000000
VERSION     DATIHC010000893.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1850)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1850)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1850
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22601"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1162)
                     /locus_tag="VLF16_14890"
     CDS             complement(<1..1162)
                     /locus_tag="VLF16_14890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017939079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HSX72215.1"
                     /translation="MSAELLTLEGVPGRRILRLYNLYRVTVGLALVLLISSKLDSELL
                     ELAHVQLFRSGSWAYLVLNVLVAVLLQRPRHLAQVFALALLDVMLLCALFYSAGGTPS
                     GIGNLLIVAVAIANILLHGRVGLLIAAVAAIGMLTLTFYLSLHRPAASAQFVQAGALG
                     ALCFAAAIFLQGLTRRLQQSESLAEQRAVDVASLEELNSLILQRMRTGILVLDDQHKV
                     LLANQSALGMLGRNKLENKVLDPYCPTLVQRLEHWQHNPTLRPQSLQAMADGPLLQPS
                     FIHLQRAEEQHTLVFLDDISQITQQAQQLKLASLGRLTAGIAHEIRNPLGAISHAAQL
                     LQESEDLEEPDRRLAQIIQDHSRRMNMVIENVLQLSRRRQAEPQLLDLKYWLH"
     gene            complement(1159..1380)
                     /locus_tag="VLF16_14895"
     CDS             complement(1159..1380)
                     /locus_tag="VLF16_14895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PP0621 family protein"
                     /protein_id="HSX72216.1"
                     /translation="MLRLLFWIAVIAAAFWLWRRFNRPVSPKARPHDSEPAPMVRCAQ
                     CGIHVPRDKALPQGSQWFCSQAHLDQSER"
     gene            complement(1527..>1850)
                     /locus_tag="VLF16_14900"
     CDS             complement(1527..>1850)
                     /locus_tag="VLF16_14900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019650974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HSX72217.1"
                     /translation="LETLKLNYPDHPTLVDGQFVPLEEEADNRTWLAKATLGLIESDA
                     PLPPGETRASQDVIRQYEDAQEQIPDELQPENQEEVEEDLESEAEGNSEDRSWFSYMT
                     FGLFD"
BASE COUNT          295 a          578 c          657 g          320 t
ORIGIN      
        1 ggtgcagcca gtactttagg tcgagcagtt gcggttcggc ctggcgccgc cgcgacagct
       61 gcagcacgtt ctcgatcacc atgttcatcc gccgcgaatg gtcctggatg atctgcgcca
      121 gccggcgatc cggctcctcc agatcctccg actcctgcag cagctgcgcc gcatggctga
      181 tggcgcccag cgggttgcgg atctcatggg cgatgccggc ggtcaggcgg cccagggacg
      241 ccagtttgag ttgctgggcc tgctgggtga tctgcgagat gtcgtcgagg aacaccaggg
      301 tgtgctgctc ctcggcgcgc tgcagatgaa tgaagctcgg ctgcagcagc gggccgtcgg
      361 ccatcgcctg caggctctgc gggcgcaggg tcgggttgtg ctgccaatgc tccaggcgct
      421 ggaccagcgt cgggcagtag ggatcgagca ccttgttttc cagcttgttg cgcccgagca
      481 tgcccagtgc gctctggttg gccagcagga ccttgtgttg gtcgtccagc accagaatgc
      541 cggtgcgcat gcgctgcagg atcagcgagt tgagctcctc caggctggcc acatcgaccg
      601 cgcgctgttc ggccaggctc tcgctctgct gcaggcgacg ggtcaggccc tgaaggaaga
      661 tcgccgcggc gaagcacagc gctcccaggg cgccggcctg gacgaactgg gcgctggcgg
      721 cggggcggtg caggctcagg tagaaggtga gggtcagcat gccgatggcg gcgaccgcgg
      781 cgatcagcag gccgacgcgg ccatgcagca ggatgttggc gatcgccacc gcgacgatca
      841 gcaggttgcc gatgccgctg ggcgtaccgc ccgccgagta gaacagggcg cacagcagca
      901 tcacatcgag cagcgccagg gcgaacacct gggccagatg ccggggccgc tgcagcagca
      961 ccgccaccag cacgttgagc accaggtacg cccagctgcc ggagcggaac agctgcacgt
     1021 gggccagttc cagaagttcg ctgtccagct tgctggagat cagcagcacc agcgccaggc
     1081 cgacggtgac ccggtacagg ttgtacagac gcaggatgcg gcgaccgggt acgccttcca
     1141 gggtcagcag ctcggcgctc accgttcgct ctggtccagg tgggcctgac tgcagaacca
     1201 ctgcgaaccc tggggcaggg ccttgtcgcg ggggacatgg atgccacact gggcgcagcg
     1261 caccatcggc gccggctcgc tgtcatgcgg cctggccttg ggcgagacgg ggcggttgaa
     1321 gcgtcgccat agccagaagg cggcggcgat cacggcgatc cagaacagca ggcggagcat
     1381 ggaattctct ctcgttggca gtggtccagt ttagccaagg tgcgaggcga ggcgcagcag
     1441 gcgaaggcca tggctgtgca ctgccgcgcg aacgccgggc atgaaaaagg gaggctcggc
     1501 ctcccttctt ggtgtgtggc gctgtatcag tcgaacaggc cgaaggtcat gtagctgaac
     1561 caggagcgat cctcggagtt gccctcggcc tcgctctcca ggtcttcctc gacctcttcc
     1621 tgattctccg gctgcagctc gtccgggatc tgttcctgcg cgtcctcgta ctgacggatc
     1681 acgtcctggc tggcgcgggt ctcgcccggc ggcagcggcg cgtcggattc gatcaggccc
     1741 agggtggcct tggccagcca ggtgcggttg tcggcttctt cttcgagcgg cacgaactgg
     1801 ccgtcgacca gggtcgggtg gtccggatag ttgagtttca gggtttccag
//
LOCUS       DATIHC010000894         4374 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27405, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000894 DATIHC010000000
VERSION     DATIHC010000894.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4374)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4374)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4374
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27405"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1689
                     /locus_tag="VLF16_14905"
     CDS             <1..1689
                     /locus_tag="VLF16_14905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008027334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat-associated core domain-containing
                     protein"
                     /protein_id="HSX72218.1"
                     /translation="GWATLRYEYDALGQLGHCRLPDGSRLDYRYRPGGELSGIDLNGQ
                     PLTRHQFDKGRERYRRQGALLSEYDYDDQGRLQAHRVRSDHRQLLQRQYRYDASGNLA
                     AIKDSRKGNRSFHYDPLDRLVAVRGDLPESFAHDPAGTLLAQNTATPQGLANVKSNRL
                     LMQGDCHYDYDAFGNLVRERRGAGQRLVTEYRYDSQHRLIAASLPDGRQVQYRYDAFG
                     RRIAKTVDGRTTEFLWQGERLIAESGPSHYRSYVYEPGTFRPLALLQGEGETAEPFYY
                     QLDHLGTPQELTGSGGQILWSVKYRAYGSLAKVEVEEIDNPLRFQGQYFDAETGLHYN
                     RHRYYNPNTGSFLTPDPIKLAGGLNNYRYATNPTGWVDPLGLNECPNTDGSALGQADA
                     PEDNAAVREGSPSAPTPDFYVGPSGPDSTLPATGYRYMRYQDDDGTVNRYAQSTIDSK
                     SAPVTYAGFDKYETGKEAREKFQVKGPEVGPDENGPGSWSDARLRGRFKTLQLYVDGV
                     PQARVPHWKGDRDKSRLEPFAEAYPEYGEGGAQQVHLDGRKVEFDEVEILPEDK"
     gene            1686..1997
                     /locus_tag="VLF16_14910"
     CDS             1686..1997
                     /locus_tag="VLF16_14910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72219.1"
                     /translation="MKNYYVIALKDLAPQEAHSAEWPKLIGYSFAHRKFLFMEGKGHG
                     LMGAEVDQESPSLSKWQDLFVTLDAEWFLDFLKLNTFRDENDFLNKLAAISGPPEIIN
                     Y"
     gene            2147..3478
                     /gene="yegQ"
                     /locus_tag="VLF16_14915"
     CDS             2147..3478
                     /gene="yegQ"
                     /locus_tag="VLF16_14915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016495454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HSX72220.1"
                     /translation="MPPLPSPELLSPAGTLKAMRHAFAYGADAVYAGQPRYSLRVRNN
                     EFDHANLAIGIAEAHAQGKRFYVVVNIAPHNTKLKTFLKDLEPVVAMGPDALIMSDPG
                     LIMLVREHFPLMPVHLSVQANAVNWASVEFWRRQGLTRVILSRELGLEEIEEIRRQVP
                     QMELEVFVHGALCMAYSGRCLLSGYLNRRDPNQGSCTNACRWKYQAHEGREDELGGIV
                     QACQPTLGAGAPTGRVFLLEDETRPGEPMEAFEDEHGTYIMNSKDLRAVQHVQRLLQM
                     GVHSLKIEGRTKSHFYVARTAQVYRRAIDDAVAGRPFDLSLMDDLESLANRGYTEGFL
                     RRHVHDEYQNYEHGSSLAERQQFVGEFTGERRGELAEVRVKNRFAVGDRLELMTPRGN
                     LGFLLGRLETADGTTTTVAPGDGHIVYLPLPADIDLNYALLLRFNTSPPAP"
     gene            complement(3453..>4374)
                     /locus_tag="VLF16_14920"
     CDS             complement(3453..>4374)
                     /locus_tag="VLF16_14920"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003229683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071111 - cyclic-guanylate-specific
                     phosphodiesterase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GGDEF domain-containing phosphodiesterase"
                     /protein_id="HSX72221.1"
                     /translation="VGISLLPDNAREISALISQAGMAMQHAKHLGGNTFQFFTDNLQA
                     CTLERLQLETQLRKGIEDGQLEVFYQPKLCLADDSLNAAEALVRWRHPVMGLVPPGEF
                     IPLAEETGLIAPIGEFVLRQACLQAREWQRQGLADLRVSVNLSVHQLRQGNLIGLVRQ
                     VLDETGLPPRLLELELTESQLLDNVENVIATFQQLRDLGVKLAIDDFGTGYSSLSYLK
                     RFPVDYVKIDQTFVRALSAGGEDAAITRAIIAMAHGLELKVVAEGVETQAQMDFLKAQ
                     RCDEIQGFLISPPVPAERFAELLRAQAEMY"
BASE COUNT          833 a         1452 c         1392 g          697 t
ORIGIN      
        1 ggctgggcga ccctgcgtta cgaatacgac gcgctcggcc agctgggcca ctgccgcctc
       61 ccggacggca gccgcctgga ctaccgctac cggccgggcg gcgagctgtc gggcatcgac
      121 ctcaatggcc agccactgac ccgccaccag ttcgacaagg gccgcgaacg ctaccggcgc
      181 cagggcgcgc tgctcagcga atacgactac gacgaccagg gccgtctgca ggcccaccga
      241 gtacgcagcg atcaccgcca actgctgcag cgccagtacc ggtacgacgc tagcggcaac
      301 ctcgccgcca tcaaggactc gcgcaagggc aatcgcagct tccactatga cccgctggat
      361 cgtctggtgg cagtgcgcgg tgacctgccg gaaagcttcg cccacgaccc cgccggcact
      421 ctgctggcac agaacacggc cactccgcag gggctggcca acgtcaagag caaccgcctg
      481 ctgatgcagg gcgactgcca ctacgactac gacgccttcg gcaatctggt gcgcgagcgg
      541 cgcggtgcgg gacagcgact ggtcaccgaa taccgctacg acagccagca ccggctgatc
      601 gccgccagcc tgccggacgg ccgccaggtc cagtaccgct acgacgcctt tggccggcgc
      661 atcgccaaga cagtggatgg ccgcaccacc gagttcctct ggcagggcga acgcctgatc
      721 gccgaaagcg gcccgtcgca ctaccgtagc tacgtctacg aacccggcac cttccgcccc
      781 ttggcgctgc tgcagggaga aggtgagacc gccgagccct tctactacca gctcgaccac
      841 ctgggcacgc cgcaggagct gaccggctca ggcggtcaga ttctctggtc ggtgaagtac
      901 cgcgcctacg gcagcctggc caaggtggag gtcgaggaaa tcgacaaccc gctgcgcttc
      961 cagggccagt atttcgatgc cgaaacgggg ctgcactaca accgccaccg gtactacaac
     1021 ccaaataccg ggtcgtttct gacgccggac ccgatcaagc tggcgggggg gctgaacaac
     1081 tacaggtacg ccaccaaccc aaccggctgg gtggatccgc tgggcttgaa tgaatgcccc
     1141 aacaccgacg gcagcgccct gggccaagca gatgcgccag aggacaatgc tgcagttcgg
     1201 gagggctcac ccagtgcacc aacacccgat ttctacgtcg ggccttctgg accggattcg
     1261 actttgccgg ccacaggtta tcgctacatg cgataccagg acgatgacgg gacagtaaac
     1321 cgctatgccc aatcgaccat cgattccaag tcggccccgg taacctatgc aggcttcgat
     1381 aagtacgaga cgggtaagga agcgagagaa aaattccagg tgaaaggccc tgaagtaggc
     1441 ccggatgaaa atggtcccgg ctcttggagc gacgcgcggc taaggggcag attcaaaacg
     1501 ctgcagctgt atgtagatgg cgtccctcag gcccgagtac cacactggaa aggcgatagg
     1561 gacaaatccc ggctcgagcc gttcgccgaa gcctatccgg aatacggcga gggaggcgca
     1621 caacaggtcc atctggatgg tagaaaggtg gagttcgatg aagttgaaat ccttccggaa
     1681 gacaaatgaa aaactactac gtcatcgccc tcaaggatct agctccacaa gaggctcata
     1741 gcgccgagtg gcccaagctc atcggctaca gcttcgccca caggaaattt ctgttcatgg
     1801 aaggcaaggg gcatggactt atgggagccg aggttgatca ggaaagtcct tcgctgagca
     1861 agtggcagga tcttttcgtc acgctggatg ccgagtggtt tctggatttt ctgaaactga
     1921 acaccttccg tgacgagaac gacttcctaa acaagctggc cgcaatcagc ggtccacctg
     1981 aaatcatcaa ctactagcaa gcggctcgga gcagcctgtc ttggccgcat gccgcgcagc
     2041 gcaacccgtt gatcccgcac tttctagtgc agggttgcgc tggatcaagg cgcactaatg
     2101 gctgatcgga caccatcgcg ccccgattgc agatgcccgt gccgccatgc ccccgctccc
     2161 atcccccgaa ctcctctccc ccgccggcac cctcaaggcc atgcgccatg ccttcgccta
     2221 tggcgccgat gctgtctatg ccgggcagcc acgttacagc ctgcgggtgc gcaataacga
     2281 gttcgatcac gccaacctgg ccatcggcat tgccgaggcg catgcccagg gcaagcgctt
     2341 ctacgtggtg gtcaacattg cgccacacaa caccaagctg aagaccttcc tcaaggacct
     2401 ggagccggtg gtggcgatgg ggccggatgc gctgatcatg tccgaccccg ggctgatcat
     2461 gctggtgcgc gagcacttcc ccttgatgcc ggtgcacctg tcggtgcagg ccaatgcggt
     2521 gaactgggcc agcgtggagt tctggcggcg ccaggggctg acgcgggtga ttctgtcgcg
     2581 cgagttgggc ctggaggaga tcgaggagat ccgccggcag gtgccgcaga tggagctgga
     2641 agtcttcgtc cacggcgccc tgtgcatggc ctactccgga cgctgcctat tgtccggcta
     2701 cctcaacagg cgcgacccga accagggcag ctgcaccaat gcctgtcgct ggaagtatca
     2761 ggcccacgag ggccgcgagg acgagctggg cggcatcgtc caggcctgcc agccgaccct
     2821 cggcgcaggc gcaccgaccg ggcgggtgtt cctgctggag gatgagaccc gccccggcga
     2881 gccgatggag gccttcgagg acgagcacgg cacctacatc atgaactcca aggacctgcg
     2941 cgccgtgcaa cacgtgcagc gcctgctgca gatgggcgtg cactcgctga agatcgaggg
     3001 ccgcaccaag agccacttct acgtggcgcg caccgcccag gtgtaccgcc gcgccatcga
     3061 cgatgccgtg gccggccgcc cgttcgacct gagcctgatg gacgatctcg agtcactggc
     3121 caaccgcggc tacaccgagg gcttcctgcg ccgccacgta cacgacgagt accagaacta
     3181 cgagcacggc agctcgctgg ccgagcgcca gcagttcgtc ggcgagttca ccggcgagcg
     3241 gcgtggcgag ctcgccgagg tgcgggtgaa gaaccgcttc gccgtcggtg accgcctcga
     3301 gctgatgacc ccgcgcggca acctcggctt cctgctgggc agactggaga cggcggacgg
     3361 cacgaccacc acggtggcgc cgggcgacgg ccacatcgtc tacctgccgc tgccggcgga
     3421 tatcgacctg aattacgccc tgctgctgcg cttcaataca tctccgcctg cgccctgagc
     3481 agctcggcga agcgctccgc cggcaccggc gggctgatca ggaagccctg gatctcgtcg
     3541 cagcgctggg ccttgaggaa gtccatctgc gcctgggtct ccacgccctc ggccaccacc
     3601 ttgagttcca ggccgtgggc catggcgatg atggcgcggg tgatcgccgc gtcctcgccg
     3661 ccggcggaga gggcgcggac gaaggtctgg tcgatcttca cgtagtccac cgggaagcgc
     3721 ttgaggtagc tgagcgagga gtagccggtg ccgaagtcgt cgatcgccag cttcacgccc
     3781 aggtcacgca gctgctggaa ggtggcgatg acgttttcca cgttgtccag cagctggctc
     3841 tcggtcagtt ccagctcgag caggcgcggc ggcaggccgg tctcgtcgag cacctggcgc
     3901 accaggccga tcaggttgcc ctggcgcagc tgatgcaccg agaggttgac cgacacgcgc
     3961 aggtccgcca ggccctgccg ctgccactcg cgggcctgca ggcaggcctg gcgcaggacg
     4021 aactcgccga tcggcgcgat cagcccggtc tcctcggcca gcgggatgaa ctcgcccggc
     4081 ggcaccaggc ccatcaccgg gtgacgccag cgcaccagcg cctcggcggc gttgaggctg
     4141 tcgtcggcca ggcacagctt gggctggtag aacacctcca gctggccgtc ctcgatgccc
     4201 ttgcgcagct gggtctccag ctgcagacgc tccagggtgc aggcctgcag gttgtcggtg
     4261 aagaactgga aggtgttgcc gcccaggtgt ttggcatgct gcatggccat gccggcctgg
     4321 ctgatcagcg cggaaatctc gcgggcgttg tccggcagca ggctgatgcc gacc
//
LOCUS       DATIHC010000895         2193 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_24941, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000895 DATIHC010000000
VERSION     DATIHC010000895.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2193)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2193)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2193
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24941"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            85..819
                     /locus_tag="VLF16_14925"
     CDS             85..819
                     /locus_tag="VLF16_14925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HSX72222.1"
                     /translation="MRCQPDRENNVYIWTKNKQHCLLCDEPADTPQPLCSACEGELPW
                     LGGHCALCALPLPASGLVCGDCQKRPPAFARVEAAWRYDFPLDSLITRFKHQAQWPMG
                     RLLAGLLSHHLQHAFAEDLPRPDLLLPVPLGRRRLRSRGFNQAEMLADWLGAELEIPR
                     QSRWLLRPGEGAHQQELDAAARRRNLRNAFALAADAAVAGRHLALVDDVLTTGATAEA
                     LARLLLKAGAARVDVYCLARTPKPGD"
     gene            881..1627
                     /locus_tag="VLF16_14930"
     CDS             881..1627
                     /locus_tag="VLF16_14930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015097101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TOBE domain-containing protein"
                     /protein_id="HSX72223.1"
                     /translation="MTLLSTLAQHIARRPQRIALLQQVAEQGSITRAAKAAGLSYKAA
                     WDAIDELNNLAGQPLVERSVGGKGGGGARLSATGERLLQLYLRLERLQAQLLEAAEQD
                     DDLALLGRLMLRTSARNQLSGRVAAIHAQGRNDLIEIALDDDNRLQAQITHDSTERLE
                     LVVGTPVVALFKAGCLELVETGDGALRGTVEQVLADGDGPAEVRIALPGGQRLCALVE
                     AGRLAALAPSTGRPVLARVSPAQVLLGIPT"
     gene            1642..>2193
                     /gene="modA"
                     /locus_tag="VLF16_14935"
     CDS             1642..>2193
                     /gene="modA"
                     /locus_tag="VLF16_14935"
                     /inference="COORDINATES: protein motif:HMM:NF024921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_function: GO:0030973 - molybdate ion binding [Evidence
                     IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HSX72224.1"
                     /translation="MRHLLLTLNLLGAAPCIQAAEPVRIAVAANLLPVMERIARDYQQ
                     QTGAKVQLAGGSSGAFYEQIRRGAPFDLFYSADAERPDKLAAADTGEASRTYACGRLA
                     LWVPKAEPKLDALPAGKIAIAQPDTAPYGRAALQAIERSGQLDELKPRLVYAQDIGQA
                     YQFVHSGNAPSGFVALSQLTAAGT"
BASE COUNT          342 a          803 c          738 g          310 t
ORIGIN      
        1 ggtgacggag gcgatactgg cgctcatggg tattccttgt tctaggctgt gcgacacggc
       61 tgaggcatcg tcaagggaag gaccatgcgc tgtcaacctg atcgagagaa taacgtttac
      121 atctggacaa aaaacaaaca gcactgcctg ctctgcgacg agccggcgga cactccgcaa
      181 ccgctgtgca gcgcctgcga gggcgagctg ccctggctcg gcgggcactg cgcgctctgc
      241 gcactgccgt tgccggccag cggcctggtg tgcggcgact gccagaagcg gccaccggcg
      301 ttcgcccggg tggaggccgc ctggcgctat gactttccgc tcgacagcct gatcacccgc
      361 ttcaagcatc aggcgcagtg gcccatggga cgcctgctgg ccgggttgct gtcacatcat
      421 ctacaacacg cctttgccga ggacctgcca cgccccgacc tgttgctgcc ggtgccgctg
      481 gggcgcaggc gcctgcgcag ccgcggcttc aaccaggccg aaatgctcgc cgactggctg
      541 ggcgcagagc tggaaatacc gcggcagagc cgctggctgc tgcgcccggg cgaaggcgcg
      601 caccagcagg agctggacgc cgccgcgcgc cggcgcaacc tgcgcaacgc ctttgccctg
      661 gccgcagacg ccgcggtggc gggtcggcat ctcgccctgg tcgatgacgt gctgaccacc
      721 ggcgccaccg ccgaagccct ggcccgtctg ctgctcaagg ccggcgcggc gcgggtggat
      781 gtttactgcc tggcccgcac acccaagccg ggcgattgac cgccggcgcc ggatcgcgca
      841 tcgtgcctcg ctatatagaa aactatattg cgcatgcccg atgacgctcc tcagcaccct
      901 cgcccaacac atcgcccgcc gcccgcaacg catcgccctg cttcagcagg tggcggagca
      961 gggttcgatc acccgcgcgg ccaaggcggc cgggctcagc tacaaggcag cctgggacgc
     1021 gatcgacgag ctcaacaacc tggccggtca gcccctggtc gagcgcagtg tcggcggcaa
     1081 gggcggcggc ggcgcgcgcc tgtcggccac cggcgagcgc ctgctgcagc tgtacctgcg
     1141 cctggagcga ctgcaggcgc aactgctcga ggccgccgag caggacgatg acctcgccct
     1201 gctcggccgc ctgatgctgc gcaccagcgc gcgcaaccag ctcagcggcc gggtcgcggc
     1261 cattcatgcc cagggccgca acgacctgat cgagatcgcc ctggacgacg acaaccgcct
     1321 gcaggcgcag atcacccacg acagcaccga gcgcctggag ctggtcgtcg gcactccggt
     1381 ggtcgcgctg ttcaaggccg gctgcctgga gttggtcgag accggcgacg gcgcgctgcg
     1441 cggcaccgtc gagcaggtat tggcagacgg cgacggcccc gcggaggtgc gcatcgccct
     1501 gcccggcggc cagcgcctgt gcgccctggt cgaggccggg cgtctggctg ccctcgctcc
     1561 gagcaccggc cggccggtgc tggcccgcgt atcgccggcc caggttctgc tgggcattcc
     1621 cacctgagac gaggagtcac catgcgtcac ctgctgctca ccctcaacct gctcggcgcc
     1681 gccccctgca ttcaggctgc cgagccggtg cgcatcgccg tggccgccaa cctgctgccg
     1741 gtgatggagc ggatcgcccg ggactaccag cagcagaccg gcgcgaaagt gcagctggcc
     1801 ggcggttcca gcggcgcctt ctacgagcag attcgccgcg gtgcgccctt cgacctgttc
     1861 tattcggccg atgccgagcg cccggacaag ctggccgccg ccgacaccgg cgaggcatcg
     1921 cgtacctacg cctgcggccg cctggcgctg tgggtcccga aggccgaacc caaactggac
     1981 gccctgcccg ccggcaagat cgccatcgct cagccggaca ccgcacccta cggccgcgcc
     2041 gcgctgcagg cgatagaacg cagcggccag ctggatgaac tgaagccgcg gctggtgtac
     2101 gcccaggaca tcggccaggc ctatcaattc gtgcacagcg gcaacgcgcc gagcggcttc
     2161 gtcgccctca gccagctgac cgcggcgggg acg
//
LOCUS       DATIHC010000896         1899 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_1829, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000896 DATIHC010000000
VERSION     DATIHC010000896.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1829"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            73..348
                     /locus_tag="VLF16_14940"
     CDS             73..348
                     /locus_tag="VLF16_14940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003246819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2934 domain-containing protein"
                     /protein_id="HSX72225.1"
                     /translation="MNTDEQRIREFAYQIWESEGRPAGQEERHWQMACKLAEAEKAGD
                     QLQQPLKPKRISKPKAVTLAEAEAQAEKPALLKKPRAPRASTKTPKL"
     gene            357..>1899
                     /gene="glgX"
                     /locus_tag="VLF16_14945"
     CDS             357..>1899
                     /gene="glgX"
                     /locus_tag="VLF16_14945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016488161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004133 - glycogen debranching enzyme
                     activity [Evidence IEA];
                     GO_process: GO:0005980 - glycogen catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HSX72226.1"
                     /translation="MGSRIAEGHPFPLGATWDGLGVNFALFSAHATKVELCLFDEKGE
                     TELERIELPEYTDEIWHGYLPDAHPGQVYGYRVHGPYEPEAGHRFNPNKLLIDPYAKQ
                     LVGKLKWSEALFGYTIGHPDGDLSFDERDSAAFVPKCKVLDPAFTWGEQAPIRVPWDS
                     TILYETHLRGISMLHPAVPEHLRGTCAGLMNPELLRHIRSLGVSSIELLPIHAFVNDQ
                     HLLEKGMNNYWGYNSIGFFAPHPAYLASGKVSEFKEMVAHLHDAGLELILDVVYNHTA
                     EGNERGPTLCMRGIDNASYYRLMPDDRRYYINDSGTGNTLDLSHPCVLQMVTDSLRYW
                     ATEMRVDGFRFDLATILGRYATGFEERHSFLVACRQDPVLSKVKLIAEPWDCGPGGYQ
                     VGGFPPGWAEWNDKFRDNVRAFWKGDEGELADLASRLTASGDLYNQRGRRPFSSVNFI
                     TAHDGFTLRDLVSYNHKHNEDNDEDNRDGTDNNISWNHGCEGPTDDPEIRELRLRQMR
                     NMLATL"
BASE COUNT          373 a          695 c          556 g          275 t
ORIGIN      
        1 ggccaaggtg ctggcggatt tcccggtcaa tctcttctgc ctcaaacccc tccctgcccc
       61 aggagcctcg tcatgaacac cgatgaacag cgcatccgcg aattcgccta ccagatctgg
      121 gaatccgagg gccgccccgc cggccaggaa gagcgccact ggcagatggc gtgcaagctc
      181 gccgaagccg agaaggccgg cgaccagctg cagcagccgc tcaagcccaa gcgcatcagc
      241 aagcccaagg cggtgaccct ggccgaggcg gaagcccagg ccgagaaacc ggccctgctg
      301 aagaaacccc gcgcgccgcg cgccagcacc aagactccga aactctgagg tcaatcatgg
      361 gttcacgcat cgccgaaggt cacccctttc ccctcggagc cacctgggac ggtctgggcg
      421 tcaacttcgc cctgttctcg gcccacgcca ccaaggtcga actctgcctg ttcgacgaga
      481 aaggcgagac cgagctcgaa cgcatcgagc tgcccgaata cacggacgaa atctggcacg
      541 gctacctgcc cgacgcccac cccggccagg tctacggcta tcgggtccac ggcccgtacg
      601 agccggaggc cggccaccgt ttcaacccca acaagctgct gatcgacccc tacgccaagc
      661 agttggtggg taagctgaag tggtccgagg cgctgttcgg ctacaccatc ggccacccgg
      721 atggcgatct cagcttcgac gagcgcgaca gcgccgcctt cgtgcccaag tgcaaggtgc
      781 tggacccggc cttcacctgg ggcgagcaag cgccgatccg cgtgccgtgg gactccacca
      841 tcctctacga gacccacctg cgcggcatca gcatgctgca cccggcagtc cccgagcacc
      901 tgcgcggcac ctgcgcgggg ctgatgaacc cggagctgct gcgccacatt cgctcgctcg
      961 gcgtctccag catcgagttg ctgccgatcc atgccttcgt caacgaccag cacctgctgg
     1021 aaaaaggcat gaacaattac tggggctaca acagcatcgg tttcttcgcg ccgcatccgg
     1081 cctatctcgc cagcggcaag gtcagcgagt tcaaggagat ggtcgcgcat ctgcacgacg
     1141 ccggcctcga gctgatcctc gacgtggtct acaaccacac cgcagagggc aacgaacgcg
     1201 gcccgaccct gtgcatgcgc ggcatcgaca acgccagcta ctaccgcctg atgccggacg
     1261 accgccgcta ctacatcaac gattccggca ccggcaacac gctggacctg tcgcacccct
     1321 gcgtgctgca gatggtcacc gactcgctgc gctactgggc caccgagatg cgcgtggacg
     1381 gcttccgctt cgacctggcg accatcctcg gccgctacgc caccggcttt gaggaacgcc
     1441 acagcttcct cgtcgcctgt cgccaggacc cggtgctgag caaggtcaaa ctgatcgccg
     1501 agccctggga ctgcggcccc ggcggctacc aggtgggcgg tttcccaccc ggctgggcgg
     1561 agtggaacga caagttccgc gacaacgtgc gggccttctg gaagggcgac gagggcgagc
     1621 tggcggacct ggccagccgc ctcaccgcct cgggcgatct gtacaaccag cgcggccgcc
     1681 ggccgttcag ctcggtcaac ttcatcaccg cccacgacgg cttcaccctg cgcgacctgg
     1741 tctcctacaa ccacaagcac aacgaggaca acgacgagga caaccgcgac ggcacggaca
     1801 acaacatctc ctggaaccac ggctgcgaag gccctaccga cgacccggag atccgcgagc
     1861 tgcgcctgcg ccagatgcgc aatatgctgg ccaccctgc
//
LOCUS       DATIHC010000897         2722 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_17999, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000897 DATIHC010000000
VERSION     DATIHC010000897.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2722
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17999"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..229)
                     /locus_tag="VLF16_14950"
     CDS             complement(<1..229)
                     /locus_tag="VLF16_14950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015269492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="kinase/pyrophosphorylase"
                     /protein_id="HSX72227.1"
                     /translation="MKRTAFFISDGTGITAETLGQSLLAQFEAISFTKLTRPYIDSVE
                     KARAMVQQINNAAEKDGARPIIFDTVVNHEIR"
     gene            384..>2722
                     /gene="ppsA"
                     /locus_tag="VLF16_14955"
     CDS             384..>2722
                     /gene="ppsA"
                     /locus_tag="VLF16_14955"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008986 - pyruvate, water dikinase
                     activity [Evidence IEA];
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0006090 - pyruvate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HSX72228.1"
                     /translation="MVEYVISLEKLGVHDVERVGGKNASLGEMISNLAGAGVSVPGGF
                     ATTAQAYRDFLEQSGLNERIHAALDALDVDDVNALAKTGAQIRQWVMDAEFPAQLDAD
                     IRTAFAAMSSGNEQMAVAVRSSATAEDLPDASFAGQQETFLNIRGVDNVIRAAKEVFA
                     SLFNDRAIAYRVHQGFDHKLVALSAGVQRMVRSETGTAGVMFTLDTESGFRDVVFITG
                     AYGLGETVVQGAVNPDEFYVHKQTLEAGRPAILRRNLGSKAIKMIYGEEAKAGRSVKT
                     VDVDRAERARFCITDAEVSELAKQALIIEKHYGRPMDIEWAKDGDDGKLYIVQARPET
                     VKSRASATVMERYLLKEKGKVLVEGRAIGQRIGAGPVRVIHDVSEMDKVQPGDVLVSD
                     MTDPDWEPVMKRASAIVTNRGGRTCHAAIIARELGIPAVVGCGNATQVLQDGQGVTVS
                     CAEGDTGFIFEGQLGFDIRKNSVDAMPDLPFKIMMNVGNPDRAFDFAQLPNEGVGLAR
                     LEFIINRMIGVHPKALLNFAGLPAEIKDSVEKRIAGYDDPVGFYVEKLVEGISTLAAA
                     FWPKKVIVRLSDFKSNEYANLIGGKLYEPEEENPMLGFRGASRYISESFRDCFELECR
                     ALKKVRNEMGLTNVEIMVPFVRTLGEASQVVELLASNGLERGKDGLKVIMMCELPSNA
                     LLADEFLEFFDGFSIGSNDLTQLTLGLDRDSGIVAHLFDERNPAVKKLLANAIAACNK
                     AGKYIGICGQGPSDHPDLAKWLMEQGIESVSLNPDSVLDT"
BASE COUNT          509 a          878 c          866 g          469 t
ORIGIN      
        1 cacggatctc gtggttgacc acggtgtcga agatgatcgg ccgggcgccg tctttctcgg
       61 cagcattatt gatttgctgt accatggccc gcgccttctc gacactgtct atataggggc
      121 gtgtgagctt ggtgaagctg atggcctcga actgtgccag cagactttgc ccaagagtct
      181 ccgcggtgat acccgtgccg tcggagatga agaatgcggt tcgtttcatt gctggcggag
      241 gccttaagtc aggaacgatt cttggctatc ataggccccc tttgccgggc ccgtagtgga
      301 cggcattgtg actatttcct tgaggcaaag ccaggtagcg gcgccgctgc accggctctg
      361 ccacgtacag tggagagtgc accttggtag agtacgtcat ttccctcgag aagctcggcg
      421 tccacgatgt ggagcgtgta gggggcaaga atgcatccct cggcgagatg atcagcaacc
      481 tcgccggtgc tggcgtatcg gtacccggtg gcttcgccac caccgcccag gcctaccgtg
      541 acttcctgga gcagagcggc ctcaacgagc gcatccacgc cgccctcgac gcgctggacg
      601 tggacgacgt caacgccctg gccaagaccg gcgcgcagat tcgccagtgg gtgatggacg
      661 ccgagttccc agcccagctg gatgccgaca tccgcacggc cttcgccgca atgagcagcg
      721 gcaatgagca gatggcagtc gccgtgcgtt cctcggccac cgccgaagac ctgcccgacg
      781 cctccttcgc cggccagcag gaaaccttcc tgaacattcg tggcgtggac aacgtgatcc
      841 gcgctgccaa ggaagtcttc gcttcgctgt tcaacgaccg tgccatcgcc taccgcgtgc
      901 accagggctt cgaccacaaa ctggtcgccc tgtccgccgg cgtgcagcgc atggtgcgtt
      961 cggaaaccgg caccgccggc gtgatgttca ccctggacac cgagtccggc ttccgcgacg
     1021 tagtgttcat caccggcgcc tacggcctcg gcgagaccgt ggtgcagggc gccgtgaacc
     1081 ccgacgagtt ctacgtgcac aagcagaccc tggaagcggg tcgcccggcc atcctgcggc
     1141 gcaacctggg cagcaaggcg atcaagatga tctacggcga agaggccaag gccggtcgct
     1201 cggtcaagac cgtcgacgtc gaccgcgccg agcgtgcgcg cttctgcatc accgacgccg
     1261 aagtcagcga gctggccaag caggcgctga tcatcgagaa acactacggt cgcccgatgg
     1321 acatcgagtg ggcgaaggac ggcgacgatg gcaagctgta catcgtccag gcccgcccgg
     1381 aaaccgtgaa gagccgcgcc agcgccaccg tgatggagcg ctacctgctg aaggaaaagg
     1441 gcaaggtcct ggtggaaggc cgcgccatcg gccagcgcat cggcgccggc ccggtccgcg
     1501 tgatccacga cgtgtccgag atggacaagg tccagccggg cgacgtactg gtctccgaca
     1561 tgaccgaccc ggactgggag ccggtgatga agcgcgccag cgccatcgtc accaaccgcg
     1621 gtggccgtac ctgccacgcc gccatcatcg cccgtgagct gggcattccg gccgtggtcg
     1681 gctgcggcaa tgccacccag gtgctgcaag acggtcaggg cgtgaccgtg tcctgtgccg
     1741 agggtgacac cggcttcatt ttcgagggcc agctgggctt cgacatccgc aagaactcgg
     1801 tcgacgccat gcccgacctg ccgttcaaga tcatgatgaa cgtcggcaac ccggaccgcg
     1861 ccttcgattt cgcccagctg cccaacgagg gcgtgggcct ggcccgtctc gaattcatca
     1921 tcaaccgcat gatcggtgtg caccccaagg cgctgctgaa cttcgccggc ctgccggccg
     1981 agatcaagga cagcgtcgag aagcgcatcg ccggctacga cgacccggtc ggcttctatg
     2041 tggagaagct ggtcgaaggc atcagtaccc tggccgcggc cttctggccg aagaaggtca
     2101 tcgtgcgcct gtcggacttc aagtccaacg agtacgccaa cctgatcggc ggcaagctgt
     2161 acgagccgga agaagaaaac ccgatgctcg gtttccgtgg cgcctcgcgc tacatcagcg
     2221 aaagcttccg cgactgcttc gagctggagt gccgcgcgct gaagaaggtg cgcaacgaga
     2281 tgggcctgac caacgtcgag atcatggtgc cgttcgtacg taccctgggt gaggcgtcgc
     2341 aggtggtcga gctgctcgcc agcaatggcc tggagcgtgg caaggatggc ctgaaggtca
     2401 tcatgatgtg cgaactgccg tccaacgcgt tgctggccga cgagttcctc gagttcttcg
     2461 acggcttctc catcggctcc aacgacctga cccagttgac tctgggcctg gaccgcgact
     2521 ccggcatcgt cgcccacctg ttcgacgagc gtaacccggc ggtgaagaag ctgctggcca
     2581 acgccatcgc tgcctgcaac aaggccggca agtacatcgg catctgcggt cagggcccgt
     2641 cggaccaccc ggacctggcc aagtggctga tggagcaggg catcgaaagc gtctcgctga
     2701 accccgactc ggtgctggat ac
//
LOCUS       DATIHC010000898         1559 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27446, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000898 DATIHC010000000
VERSION     DATIHC010000898.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27446"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(56..>1559)
                     /locus_tag="VLF16_14960"
     CDS             complement(56..>1559)
                     /locus_tag="VLF16_14960"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HSX72229.1"
                     /translation="VITGREDFLSPLYQGFAEVDKLMHELHAAAKDDPDMLDDLQALK
                     PVIAEQRSYFDTVIRLRRDQGLETASELISQGRGKQLMDDLRSRVGEMQASHEARILL
                     LEQRRRWQQQMIMVLLVVIGVLDLAVIGLLFHFTFRILKEGRAARHSLRSLSEQLSSG
                     MQRLELRNREISLLSRMAGALHSVNRFDECYSIIDRFAGQLFPCNSGSLTLYHPSRDV
                     LEGVARWGDWPEELDLFEPHACWAIRRGQSHQVLDPSKDLLCPHLQGTPMVDAGYVCV
                     PLMAQGEPLGVLTLNGLQAPDLELAEAFAEQISLGVSNLSLRDSLRQQSLVDALTGLH
                     NRRFLDETLRRELLRASRKQSPVAVVLLDVDHFKRFNDTFGHEAGDLVLRHLALEMKR
                     NVRTSDLACRYGGEEFCLVMPEISREDAVERCESLRVAVSRLQVRYGGQPLGPINISL
                     GLAWFPQDGDQMDTLLHAADLALYQAKRGGRNRLCIYRPEMDGAEETPAG"
BASE COUNT          248 a          523 c          540 g          248 t
ORIGIN      
        1 ggctgggcca gctcggcatc gccgcctcgg cggtcgtgct gctcgcccgc ccggctcagc
       61 cggcgggtgt ctcttcggca ccgtccattt ccgggcggta gatgcacagc cggttacgcc
      121 cgccgcgctt ggcctggtac agggccaggt cggcggcgtg cagcagcgtg tccatctggt
      181 cgccgtcctg ggggaaccag gccaggccga gggagatatt gatcggcccg agcggctggc
      241 cgccgtagcg cacctgcagg cggctgaccg ccacgcgcag ggactcgcag cgttcgacgg
      301 catcctcgcg gctgatctcc ggcatcacca ggcagaactc ctcgccgccg tagcggcagg
      361 ccaaatcact ggtgcgcacg ttgcgcttca tctccagggc caggtgacgc agcaccaagt
      421 caccggcctc gtggccgaag gtgtcgttga agcgcttgaa gtggtccacg tcgagcagca
      481 ccaccgccac cggcgattgc ttgcgcgagg cgcgcagcaa ttcgcggcgc agggtctcgt
      541 cgaggaaacg gcggttgtgc aggccggtca gggcatcgac cagcgattgc tgacgcaggc
      601 tgtcgcgcag cgacaggttt gagacgccca gggaaatctg ctcggcgaag gcctcggcca
      661 gctccaggtc gggggcctgc aggccgttca gggtcagcac gccgagcggc tcgccctggg
      721 ccatcagcgg cacgcagaca tagccggcgt cgaccatcgg cgtgccctgc aggtgcgggc
      781 acagcaggtc cttggacgga tcgagcacct gatggctctg gccgcggcgg atggcccagc
      841 acgcatgtgg ctcgaacagg tccagctcct cgggccagtc accccagcgg gcgacgcctt
      901 ccagcacgtc gcgtgacggg tggtagaggg tcaggctgcc agagttgcag ggaaacagct
      961 ggccggcgaa acggtcgatg atgctgtagc actcgtcgaa gcgattgacc gagtgcagcg
     1021 cgccggccat gcggctgagc agggagatct cccggttgcg cagctccaga cgctgcatgc
     1081 cgctggaaag ctgctcgctg aggctgcgca ggctgtggcg ggcggcgcgt ccctccttga
     1141 ggatgcgaaa ggtgaaatgg aacagcaggc cgatcaccgc caggtccagc accccgatca
     1201 ccaccagcag caccatgatc atctgctgct gccatctgcg ccgctgctcc agcagcagga
     1261 tgcgcgcctc gtgcgacgcc tgcatctcgc cgacccgcga gcgcagatcg tccatcagct
     1321 gcttgcccct gccctggctg atcagctcgc tggcggtctc cagaccctgg tcgcggcgca
     1381 gccggatgac tgtgtcgaag tagctgcgtt gctcggcgat gaccggcttc agcgcctgca
     1441 gatcgtcgag catgtccggg tcgtccttcg ccgcggcgtg cagctcgtgc atcagcttgt
     1501 cgacctcggc gaagccctgg tacagcggcg acaggaagtc ctcgcgaccg gtgatgacg
//
LOCUS       DATIHC010000899         1572 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_45899, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000899 DATIHC010000000
VERSION     DATIHC010000899.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45899"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            3..>1572
                     /gene="dnaK"
                     /locus_tag="VLF16_14965"
     CDS             3..>1572
                     /gene="dnaK"
                     /locus_tag="VLF16_14965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008939490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HSX72230.1"
                     /translation="MDLGTTNSCVAVMDGSNPKVIENAEGARTTPSMIAFSKDGERLA
                     GQPAKRQAVTNPENTIFAVKRLIGRRYDDPVTEKDKKLVPYKIVKGDNGDAWVEANGE
                     KYSPSQISAMILQKMKETAESYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVL
                     RIINEPTAAALAYGLDKKNTGTIAVYDLGGGTFDISILEIGDGVFEVKSTNGDTFLGG
                     EDFDMRLVDYLADEFKREQGIDLRNDKLALQRLKEAAEKAKIELSSSTQTEINLPFIT
                     ADASGPKHLTLKLSRSKLESLVEDLIQRTIEPCKQAMKDAGVSASQIDEVVLVGGMTR
                     MPKVQEAVKQLFGKEPHKGVNPDEVVAMGAAIQGGVLQGDVKDVLLLDVTPLSLGIET
                     LGGVFTRLIDRNTTIPTKKSQTFSTAEDNQSAVTIRVFQGEREMAADNKLLGQFDLVG
                     IPPAPRGVPQIEVTFDIDANGIVQVSAKDKGTGKEQQIRIQASGGLSDSDIERMVREA
                     EANAETDKKRREAVE"
BASE COUNT          336 a          511 c          498 g          227 t
ORIGIN      
        1 gtatcgacct cggcaccacc aacagctgtg tcgccgtcat ggacggttcg aacccgaagg
       61 tgatcgagaa cgcggaaggc gcccgcacca cgccctccat gatcgccttc tccaaggatg
      121 gcgagcgtct ggccggccag ccggcgaagc gccaggcggt gaccaatccc gagaacacga
      181 tttttgcggt gaagcgcctg atcggccgcc gctatgacga tccggtcacc gagaaggaca
      241 agaagctcgt cccctacaag atcgtcaagg gcgacaatgg cgacgcctgg gtcgaggcca
      301 atggcgaaaa atactcgccg tcgcagatct cggcgatgat cctgcagaag atgaaggaaa
      361 ccgccgaatc gtatctcggc gagaccgtga cgcaggccgt catcaccgtt cccgcctact
      421 tcaacgactc ccagcgtcag gccaccaagg acgccggcaa gatcgccggc ctcgaagtgc
      481 tgcgcatcat caacgagccg accgctgccg cgctcgccta tggcctcgac aagaagaaca
      541 ccggcaccat cgcggtctat gacctgggtg gcggtacctt cgacatctcg atcctcgaga
      601 tcggcgatgg cgtgttcgag gtgaagtcca ccaatggcga caccttcctg ggcggcgaag
      661 acttcgacat gcgcctggtc gactaccttg ccgacgagtt caagcgcgag cagggcatcg
      721 acctccgcaa cgacaagctg gcgctgcagc gcctgaagga agcggcggaa aaggccaaga
      781 tcgagctgtc gagctcgacc cagaccgaaa tcaacctgcc cttcatcact gccgacgcct
      841 cgggccccaa gcacctgacg ctgaagctga gccgctccaa gctcgaatcg ctggtggaag
      901 acctgatcca gcgcaccatc gagccgtgca agcaggcgat gaaggacgcc ggcgtttccg
      961 cgtcgcagat cgacgaagtg gtgctggtcg gcggcatgac ccgcatgccc aaggtgcagg
     1021 aagcggtgaa gcagctgttc ggcaaggagc cgcacaaggg cgtcaacccg gacgaagtgg
     1081 tggccatggg cgccgccatc cagggcggcg tgctgcaggg cgacgtcaag gacgtgctgc
     1141 tgctcgacgt gaccccgctg tcgctcggga tcgagacgct gggtggcgtg ttcacccgcc
     1201 tgatcgaccg caacaccacc atcccgacca agaagtccca gaccttctcg accgccgagg
     1261 ataaccagtc ggccgtgacc atccgcgtct tccagggcga gcgcgaaatg gcggcggaca
     1321 acaagctgct cggccagttc gacctggtcg ggatcccgcc ggcgccgcgc ggcgtgccgc
     1381 agatcgaggt gaccttcgac atcgacgcca acggcatcgt gcaggtttcg gccaaggaca
     1441 agggcaccgg caaggaacag cagatccgca tccaggcttc gggtggtctc tcggattccg
     1501 acatcgagcg catggtgcgc gaggcggaag ccaatgccga gaccgacaag aagcgccgcg
     1561 aggcggtgga gg
//
LOCUS       DATIHC010000900         2161 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27474, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000900 DATIHC010000000
VERSION     DATIHC010000900.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2161
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27474"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1589)
                     /locus_tag="VLF16_14970"
     CDS             complement(<1..1589)
                     /locus_tag="VLF16_14970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSX72231.1"
                     /translation="MLSSELKSQIQGAYSRFLEAKGLKARYGQRLMIAEVAKVLGTIK
                     HNDEGQRDGEPAVVAVEAGTGTGKTVAYSLAAIPTAKAAGKRLVIATATVALQEQIVH
                     KDLPDLMRNAGLQFSFALAKGRGRYLCLSKLDMLLQEGQAQSATAQMFEEEGFRIDVD
                     EHSQKLYSKMIEKLAGNRWDGDRDSWPEELEDQVWGTLTTDHSQCTSRHCPNFQQCAF
                     YKAREGMTKVDVIVTNHDMVLADLALGGGAVLPDPRETLYVFDEGHHLPDKAIGHFAH
                     FTRLRSTADWLGQVEKNLTKLLAQHPLPGDLGRLIEQVPEQARELRTQQQFMFSACEQ
                     LADFRAGEDMEGRERPRHRFEGGLVPEHLRELGIELKKGFAKLTDVFTRLTELLKQAM
                     DDEGTSLGIASHQAEEWYPLFGSLLARAQGNWELWTAFTVEDPEDSPPMARWLTLADS
                     GAAFDIEVNASPILAAETLRRNLWNVAYGALVTSATLTALGTFDRFRMRSGLPRAAVT
                     AVVPSPFHHADAGLLRVPDLKA"
     gene            1672..2136
                     /locus_tag="VLF16_14975"
     CDS             1672..2136
                     /locus_tag="VLF16_14975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017002297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2269 family protein"
                     /protein_id="HSX72232.1"
                     /translation="MTVFSALYAVHVLAALVWVGGMFFAWMILRPAAAAKLQAPERLA
                     LWLEVFRRFFLWVWIAVLALPITGMGMLHMRFTGFETAPRYVQVMMGLYLVMLALFLR
                     VRLLQLPQLRRAVETQDWPAGGEALGRIRRLVGSNLLVGLALVAIAAARPGL"
BASE COUNT          305 a          695 c          746 g          415 t
ORIGIN      
        1 gccttgaggt ccggcacccg cagcagcccg gcgtcggcat ggtgaaacgg gctgggcacc
       61 acggcggtga ccgccgcccg gggcagaccg gaacgcatgc ggaagcggtc gaaggtgccg
      121 agcgcggtca gggtggccga ggtcaccagg gcgccgtagg cgacattcca cagattgcgg
      181 cgcagggtct cggcggcgag gatcgggctg gcgttgacct cgatgtcgaa ggccgcgccg
      241 ctgtcggcca gggtcagcca gcgcgccatc ggcgggctgt cttccgggtc ctcgacggta
      301 aaggcggtcc acaactccca gttgccctgg gcgcgggcca gcaggctgcc gaacagcgga
      361 taccactcct cggcctggtg actggcgatg ccgaggctgg tgccctcgtc gtccatcgcc
      421 tgcttgagca gttcggtgag gcgcgtgaac acatcggtga gcttggcgaa gcccttcttc
      481 agctcgatgc ccagctcgcg caggtgctcg ggcaccaggc cgccctcgaa gcgatgacgc
      541 gggcgctcgc ggccttccat gtcctcgccg gcacggaaat ccgccagctg ctcgcaggcg
      601 ctgaacatga actgttgctg ggtgcgcagc tcgcgggcct gctccggcac ctgctcgatc
      661 agccgaccga gatcgccggg cagcggatgc tgggccagca gcttggtcag gttcttctcc
      721 acctggccga gccagtcggc ggtgctgcgc aggcgggtga agtgggcgaa gtggccgatg
      781 gccttgtcgg gcaggtggtg accttcgtcg aacacgtaca gcgtctcgcg cgggtccggc
      841 agcacggcgc cgccgcccag ggccaggtcg gccaggacca tgtcgtggtt ggtgacgatc
      901 acgtcgacct tggtcatgcc ttcgcgcgcc ttatagaaag cgcactgctg gaaattcggg
      961 cagtggcggc tggtgcactg gctgtggtcg gtggtcaagg tgccccagac ctggtcttcc
     1021 agctcttccg gccagctatc gcggtcgccg tcccagcggt tgccggcgag cttctcgatc
     1081 atcttgctgt agagcttctg gctgtgctcg tcgacatcga tacgaaagcc ttcttcctcg
     1141 aacatctgcg ccgtggcgct ctgcgcctgg ccttcctgca gcagcatgtc cagcttggac
     1201 aggcacaaat agcggccgcg gcccttggcc agagcgaagc tgaattgcag gccggcgttg
     1261 cgcatcaggt ccggcaggtc cttgtgcacg atctgctcct gcagcgccac ggtggcggtg
     1321 gcgatcacca ggcgcttgcc ggcggccttg gcggtgggaa tggcagccag gctgtaggcc
     1381 accgtcttgc cggtaccggt acccgcctcc accgcgacca cggcgggttc gccatcgcgc
     1441 tggccttcgt cgttgtgctt gatcgtcccc agcaccttgg ccacttcggc gatcatcaaa
     1501 cgctggccat agcgggcctt gagccccttg gcttcgagga aacggctgta agcgccctgg
     1561 atctgggact tgagttcgga gctgagcatg ggcgcgggaa aaggctggat aaattttcag
     1621 tagtttaccg ataggttatg ctcgcgcgcc atcgttaacc ggagtctgcc gatgaccgtc
     1681 ttctctgccc tctacgccgt gcatgtgctg gctgccctgg tctgggtcgg cggcatgttc
     1741 ttcgcctgga tgatcctgcg cccggccgcg gcggccaaat tgcaggcgcc cgagcgcctg
     1801 gccttgtggc tggaggtgtt tcgccgcttc tttctctggg tgtggatcgc cgtgctcgca
     1861 ctgccaataa ccggcatggg catgctgcac atgcgcttca ccggtttcga gaccgcgccg
     1921 cgctacgtgc aggtgatgat ggggctgtat ctggtgatgc tggcgctgtt cctgcgggta
     1981 cgcctgctgc aattgccgca actgcggcgc gccgtggaga cgcaggactg gcctgccggt
     2041 ggcgaagccc tgggacgcat ccgccgcttg gtcggcagca atcttctggt gggattggcg
     2101 ctggtggcga tcgccgccgc gcgcccgggc ctctgaatcg actcccgcgc cacctccagg
     2161 t
//
LOCUS       DATIHC010000901         1939 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18033, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000901 DATIHC010000000
VERSION     DATIHC010000901.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1939)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1939)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1939
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18033"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..717)
                     /locus_tag="VLF16_14980"
     CDS             complement(<1..717)
                     /locus_tag="VLF16_14980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011063053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur-binding ferredoxin reductase"
                     /protein_id="HSX72233.1"
                     /translation="MPDITAAGRSWSVASGSNLLDALNEAGLRVPYSCRSGSCHACLV
                     RCLGGEPLDQQPGALGEALREQGWRLACQCRVADDLQIELFDPARDGLPARVQALDWL
                     SPTVLRLRLQPERPLRYAAGQHLVLWTAAGVARPYSLASLPCEEPWLEFHLDCRQSGA
                     FSDAARLLQPGDPLRLGELRGGALHYDPDWCQRPLWLLAAGTGLAPLWGVLREALRQH
                     HQGEIRVIHLAHDAAGHYLAE"
     gene            complement(710..1837)
                     /locus_tag="VLF16_14985"
     CDS             complement(710..1837)
                     /locus_tag="VLF16_14985"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017674993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HSX72234.1"
                     /translation="MSTSSSGVTKRSLQSLLLKRFGMAVASYALVLLLMWVALWAGVY
                     SGSVSYALLCTGLVVTSQLIFYALFRSGRNLRFADPSLTEAQILVGLALHTVLLAQFD
                     NARGSMLMFYLIILMFGVFQLRPRVFVRCAAIAFFAFAGLNLWEGYQLRLDNPGQALL
                     QCCALFIGLVWQSLFASYVQALRQRMRQRRYALQAHQDTLRGMMRQLEDLVATDELTG
                     LFNRRHFLRLAMRELDNLEHGRQHGLALIDLDHFKRINDMHGHAAGDRVLQTFAAVAR
                     ACLRDGDVLARYGGEEFVLLLPNTDADQFTSCCERLREAFASAEPVGMQVSNLSLSAG
                     MTLLSEGDDLDEALQRADQALYRAKRGGRNRCDAAWENAGA"
BASE COUNT          339 a          665 c          668 g          267 t
ORIGIN      
        1 ctcggcgaga tagtgcccgg ccgcgtcatg ggccagatga atgacccgta tctcgccctg
       61 gtgatgctga cgcagcgcct cgcgcaacac gccccagagc ggcgccaggc cggtgcccgc
      121 ggccagcagc cacagtgggc gctggcacca gtcgggatcg tagtgcagcg cgccaccacg
      181 cagctcgccg aggcgcagcg gatcgcccgg ctgcagcaga cgggcggcat cgctgaaggc
      241 gccgctctgc cggcagtcca gatggaattc cagccagggc tcctcgcacg gcaggctggc
      301 cagcgaatag ggccgcgcca cgcctgcggc cgtccacagc accaggtgct ggcccgcggc
      361 ataacgcaac ggccgctccg gctgcagacg caggcgcagc accgtcgggc tcagccagtc
      421 cagcgcctgc acccgcgccg gcaggccatc gcgggcgggg tcgaacagct cgatctgcag
      481 atcgtccgcc acccgacact ggcaggccag gcgccaaccc tgttcgcgca gcgcctcgcc
      541 gagcgcaccg ggctgttggt ccagtggctc gccgccgagg cagcgcacta ggcaggcgtg
      601 gcaactgccg gagcggcagc tgtaaggcac gcgcaggccg gcttcattca gggcatcgag
      661 caggttgcta ccggaagcca ccgaccagga ccggccggcg gcggtgatat caggcaccgg
      721 cgttctccca ggccgcgtcg cagcggttgc gtccgccacg cttggcccgg taaagcgcct
      781 ggtcggcgcg ctgcagggcc tcgtcgaggt cgtcgccctc gctgagcagc gtcatgccgg
      841 cggacaggct caggttgctc acctgcatgc ccaccggctc ggcgctggcg aaggcctcgc
      901 gcaggcgctc gcagcagctg gtgaactggt cggcatcggt gttgggcagc agcagcacga
      961 actcctcacc gccgtagcgg gccagcacgt cgccgtcgcg caggcaggcg cgcgccaccg
     1021 cggcgaaggt ctgcaacacc cggtcgccgg cggcatggcc gtgcatatcg ttgatccgct
     1081 tgaagtggtc caggtcgatc agcgccaggc cgtgttgacg gccgtgctcg aggttgtcca
     1141 gctcgcgcat ggccaggcgc aggaagtggc ggcggttgaa cagcccggtc agctcgtccg
     1201 tggccaccag gtcctcgagc tggcgcatca tgccgcgcag ggtgtcctgg tgcgcctgca
     1261 gcgcgtagcg acgctggcgc atgcgctggc gcagcgcctg cacgtagctg gcgaacaggc
     1321 tctgccagac caggccgatg aacagcgcgc agcactgcag cagggcctgc ccgggattgt
     1381 ccaggcgcag ctgatagcct tcccagaggt tgagcccggc gaaggcgaag aaggcaatgg
     1441 cggcgcagcg cacgaacacc cgcggacgca gctggaacac gccgaacatg aggatgatca
     1501 ggtagaacat cagcatgctg ccgcgggcgt tgtcgaactg ggccagcaac acggtatgca
     1561 gcgcgaggcc gacgaggatc tgcgcctcgg tcaggctggg atcggcgaaa cgcaggttgc
     1621 gaccgctgcg aaacagcgca tagaagatca gctggctggt gacgaccagc ccggtgcaga
     1681 gcagcgcgta ggaaacggag ccgctgtaga cgcccgccca cagcgccacc cacataagca
     1741 gcaataccag ggcgtaactc gccaccgcca tgccgaaacg cttcagcagc aggctttgca
     1801 ggcttctctt ggtgacgcct gaactgctcg tgctcatggg ctccatcccg tagtggcacc
     1861 ttgccaaact ctaccctcgt gatcacaaaa ttgatagcgc gccggagggc tccgacgcgc
     1921 ttatttcgtg gcctgggga
//
LOCUS       DATIHC010000902         2443 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_38917, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000902 DATIHC010000000
VERSION     DATIHC010000902.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2443)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2443)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2443
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38917"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..354)
                     /locus_tag="VLF16_14990"
     CDS             complement(<1..354)
                     /locus_tag="VLF16_14990"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008053440.1"
                     /note="Catalyzes the transfer of electrons from NADH to
                     quinone; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HSX72235.1"
                     /translation="MELTTQHFIALLPLLVTSATIIVVMLAIAWKRNHAMAFILSVLG
                     LNLALLSLIPAVDVTPIQVTPLLLIDKFACYYMALVLAATLACTTLIHAYLGGESGKQ
                     GYPGNREELYLLMLLS"
     gene            complement(364..1893)
                     /gene="nuoM"
                     /locus_tag="VLF16_14995"
     CDS             complement(364..1893)
                     /gene="nuoM"
                     /locus_tag="VLF16_14995"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019092840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HSX72236.1"
                     /translation="MILPWLILIPFIGGLLCWQGERFGNTLPRWIALLTMGLLFGLGL
                     WLWGTADFSLAPAPGAEPQWAAEFKVQWIERLGISIHLGLDGLSVLMICLTGLLGVLS
                     VLCSWNEIQKRVGFFHLNLMWILGGVVGVFLAIDLFLFFFFWEMMLVPMYFLIALWGH
                     SGSKGNTRINAATKFFIFTQASGLIMLVAILGLVFVHYNSTGVLTFNYADLLKTDLPA
                     GTEYLLMLGFFAAFAVKFPVVPVHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLMRFA
                     LPLFPNASAEFAPIAMWLGVFAIAYGAFLSFAQTDIKRLVAYSSVSHMGFVLIAIYSG
                     SHIALQGAVVQMMAHGLSAAALFILCGQLYERLHTRDMREMGGIWARMPWLPAVSLFF
                     AAAALGLPGTGNFVGEFLILVGSFPAAPWVVVLAATGLVFGSVYSLAMIHRAYFGPAK
                     SDEPLQGLKARELYMVLGLAVLLILLGVYPQPVLDTSAASMQGVQQWFSGALTQLASV
                     R"
     gene            complement(1909..>2443)
                     /locus_tag="VLF16_15000"
     CDS             complement(1909..>2443)
                     /locus_tag="VLF16_15000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003240698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HSX72237.1"
                     /translation="HGDAKTDAHAGSGLAHNLPLIVLIILSTFVGALITPPLAGVLPQ
                     SLGHAGGEAKHSLEIASGAIALAGILLAALLFLGKRSVATAVAQSALGRFLSVWWFAA
                     WGFDWLYDKLFVQPYLLLCRLLGRDPIDQSIGLIPRLARGGNAVLVRAQTGQVRWYAA
                     SIAGGAVFVLAVLLFLN"
BASE COUNT          502 a          732 c          884 g          325 t
ORIGIN      
        1 ggacagcagc atcagcaggt acagctcttc gcggttgccc gggtagccct gcttgccgga
       61 ttcgccgccc aggtaggcat ggatcagggt ggtgcaggcc agggtagcgg ccagcaccag
      121 ggccatgtag tagcaggcga acttgtctat cagcagcagc ggggtgacct ggatcggcgt
      181 cacgtctacg gccgggatca gcgacagcag ggccaagttg aggcccagca ccgagaggat
      241 gaaggccatg gcgtggttgc gtttccaggc gatggccagc atcaccacga tgatggtggc
      301 gctggtgacc agcagcggca gcagcgcgat gaagtgttga gtcgtcagtt ccatagcgcg
      361 tgattaccgg accgaagcga gttgagtgag ggcgccgctg aaccactgct gcacgccttg
      421 catgctggcg gcagaggtgt cgagcactgg ctgcgggtag acgccgagca ggatcagcag
      481 cacggccagg ccgagcacca tgtacagctc gcgggccttg aggccctgca gcggctcgtc
      541 ggacttggcc ggaccgaagt aggcacggtg gatcatcgcc agcgagtaga ccgagccgaa
      601 caccaggccg gtggcggcca gtaccacgac ccacggtgcg gccgggaagc tgccgaccag
      661 gatcaggaac tcgccgacga agttgccggt gcccggcagg cccaatgcgg cggcggcgaa
      721 gaacaggctc accgctggca gccagggcat acgggcccag atgccgccca tctcgcgcat
      781 gtcgcgggtg tgcaggcgct cgtagagctg gccgcagagg atgaacagcg cggcggcgga
      841 caggccgtgg gccatcatct gcaccaccgc gccctgcagg gcgatgtggc tgccggagta
      901 gatggcgatc agcacaaagc ccatgtgcga gacgctggag taggccacca ggcgcttgat
      961 gtcggtctgc gcgaatgaca ggaaggcgcc gtaggcgatg gcgaacacgc cgagccacat
     1021 ggcgatcggc gcgaactcgg ccgaggcatt ggggaacagc ggcagggcga agcgcatcag
     1081 gccgtaggcg gcagtcttca gcaggatacc ggccagatcc acggagccgg cggtcggcgc
     1141 ctgggcgtgg gcgtccggca gccaggagtg caccggcacc accgggaact tcacggcgaa
     1201 ggcggcgaag aagccgagca tcagcaggta ctcggtaccg gccggcaggt cggtcttgag
     1261 caggtcggcg tagttgaagg tgagcacgcc ggtgctgttg tagtggacga acaccaggcc
     1321 gaggatcgcc accagcatga tcaggccgct ggcctgggtg aagatgaaga acttggtggc
     1381 ggcgttgatg cgggtattgc ccttgctgcc gctatgaccc cagagcgcga tgaggaagta
     1441 catcggcacc agcatcattt cccagaagaa gaagaacagg aacaggtcga tggcgaggaa
     1501 caccccgacc acgccgccga gaatccacat caggttgagg tggaagaagc cgacacgctt
     1561 ctggatctcg ttccacgagc acagcaccga gagcacgccg agcaggccgg tgaggcagat
     1621 catcagcacc gacaggccgt cgaggccgag gtggatgctg atgccgagac gctcgatcca
     1681 ctggaccttg aactcggcag cccattgcgg ctcggcgcct ggcgccgggg ccaggctgaa
     1741 gtcggcggta ccccacagcc acagaccgag accgaacaac aggcccatgg tcagcagggc
     1801 gatccagcgc ggcagggtgt tgccgaagcg ctcgccttgc cagcacagca ggccgccgat
     1861 gaaggggatc aggattagcc agggcagaat catgacgggc tattttcctt aattcagaaa
     1921 caggaggacg gcgagcacga acaccgcgcc cccggcaatg gaggcggcgt accagcgcac
     1981 ctgaccggtc tgggcgcgaa ccagcacggc gttgccgcca cgggccaggc gcgggatcag
     2041 gccgatgctc tggtcaatcg ggtcgcggcc aagcaggcgg cagagcagca ggtagggctg
     2101 cacgaagagc ttgtcgtaga gccagtcgaa gccccaggcg gcgaaccacc agaccgacag
     2161 gaagcggccc agggcgctct gcgccacggc tgtggcgacg ctgcgcttgc cgaggaacag
     2221 cagggcggcc aggagaatgc cggccagggc gatggcgccg gaggcgatct ccaggctgtg
     2281 cttggcttcg ccaccggcat ggccgaggct ctgcggcagc acaccggcca gcggcggggt
     2341 gatcagcgca ccgacgaagg tagagaggat gatcagcacg atcagcggca ggttgtgggc
     2401 caggccacta ccggcatgcg catcggtctt cgcgtcgcca tgg
//
LOCUS       DATIHC010000903         1729 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_45918, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000903 DATIHC010000000
VERSION     DATIHC010000903.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1729
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45918"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(145..1074)
                     /locus_tag="VLF16_15005"
     CDS             complement(145..1074)
                     /locus_tag="VLF16_15005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014821223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSX72238.1"
                     /translation="MYEAFFGLREKPFALTPNTGFLVQLAPYQACLNLLRVALGEGEG
                     FIKVTGEVGTGKTLLCRALLNSLESERYQLAYLPNPGMSPVGLRQAVARELLIEGIDE
                     LDTQGVLDALHHRLIQLAAEGRSTVVLIDEAQALPTATLEALRLLTNLETEQAKLLQV
                     VLFGQPELDATLARDEFRQLRQRITFSYRLRPLDVKDCTRYLSERLAVAGYRGEPLFA
                     PRAIRRLVRGSGGIPRLINILAHKALMVAFGEGRRQVSAEHVRRAQLDTEGAQPFLQR
                     RPVWLGWGLAASLSLLAVVGAWPWLSQWRELLP"
     gene            complement(1078..>1729)
                     /locus_tag="VLF16_15010"
     CDS             complement(1078..>1729)
                     /locus_tag="VLF16_15010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003299197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HSX72239.1"
                     /translation="FSTVLSFGDFSGLIQLLQTQGEVRVLSSPRISTLNNQKAVIKVG
                     TDEFFVTEVSSNSSTTTVAGVTQPTQDVTLTPFFSGISLDVTPQIDQNEVVTLHVRPT
                     VSRVVDQNKTIVLGEDNVFNLPLALSTSRQSDSIVRARSGQVVVIGGLLQNNNENTDA
                     EVPWASTLPFVGNLFKQQRKALRKSELVILMRPQVVSDEVWLEEIRRSAESFRELR"
BASE COUNT          269 a          589 c          606 g          265 t
ORIGIN      
        1 agatggagcc gcggcgcagg cgctcaatgc gctcgcggcg cgcggcaccg gcctcgtcca
       61 cggcgtgcag gccttccagc gtcagccgct cggacggcgc ggcgcggcgc tcctcgaggt
      121 cgcgcagcat gtcgttgacc aggctcatgg cagcagctcc cgccactggc tgagccaggg
      181 ccaggcaccg accaccgcca gcagcgacag gctcgccgcc agcccccaac cgagccagac
      241 cgggcgacgc tgcaaaaacg gctgggcgcc ctcggtatcc agctgggcgc ggcgcacgtg
      301 ctcggccgaa acctgccgcc ggccctcgcc aaaggccacc atcagcgcct tatgcgcgag
      361 gatgttgatc agccgcggaa tgccgccgct gccgcgcacc aggcggcgga tggcacgcgg
      421 cgcgaacagc ggctcgccgc ggtagccggc cacggccagg cgctcgctga ggtagcgggt
      481 gcagtccttc acgtccagcg ggcgcagccg ataggagaag gtgatgcgct ggcgcagctg
      541 gcggaattcg tcccgcgcca gggtggcgtc cagctccggc tggccgaaca gcaccacctg
      601 cagcagcttg gcctgctcgg tttccaggtt ggtcagcagg cgcagggcct ccagggtcgc
      661 ggtcggcagg gcctgggcct cgtcgatcag caccacggtg ctgcggccct cggcggccag
      721 ctggatcagg cgatgatgca gtgcgtccag cacgccctgg gtgtcgagct cgtcgatgcc
      781 ctcgatgagc agttcacggg ccacggcctg gcgcagcccc accgggctca tgccggggtt
      841 gggcaggtag gccagctggt agcgctcgct ttccagcgag ttgagcagcg cgcggcacag
      901 cagggtcttg ccggtgccga cctcgccggt caccttgatg aagccctccc cctcacccag
      961 ggccacccgc agcaggttga ggcacgcctg atagggcgcc agctgcacca ggaagccggt
     1021 gttgggcgtc agcgcgaagg gtttctcgcg cagaccgaag aaggcctcgt acatgcctta
     1081 cctcagctcc ctgaaggatt ccgcgctgcg ccggatctcc tcgagccaga cctcatcgct
     1141 gaccacctgc gggcgcatca ggatgaccag ctcgctcttg cgcagcgcct tgcgctgctg
     1201 cttgaacagg ttgccgacga agggcagcgt gctggcccag ggcacctcgg cgtcggtgtt
     1261 ctcgttgttg ttctgcagca ggccgccgat caccaccacc tggccactgc gggcgcgcac
     1321 gatggagtcg gactggcgcg aggtggacag cgccagcggc aggttgaaga cgttgtcctc
     1381 gccgaggacg atggtcttgt tctggtcgac cacgcggctg acggtgggcc gcacgtgcag
     1441 ggtcaccacc tcgttctggt cgatctgcgg cgtcacgtcc agcgagatgc cggagaagaa
     1501 cggcgtcagg gtcacgtcct gggtcggctg ggtgacgccg gccacggtgg tggtcgagct
     1561 gttggacgac acctcggtga cgaagaactc gtcggtgccg accttgatca ccgccttctg
     1621 attgttcagc gtggagatgc gcgggctgga cagcacacgc acctcgccct gggtctgcag
     1681 cagctggatc agcccggaga agtcgccgaa gctgagcacg gtgctgaac
//
LOCUS       DATIHC010000904         4436 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_25038, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000904 DATIHC010000000
VERSION     DATIHC010000904.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4436)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4436)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4436
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25038"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(101..916)
                     /locus_tag="VLF16_15015"
     CDS             complement(101..916)
                     /locus_tag="VLF16_15015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014853876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HSX72240.1"
                     /translation="MHTLFRLTAVAGLSLLTACQAVNTTSGGAVGVERKQYMFSMLSA
                     QEVDSMYAKAYQQTLSEASSKGVLDRSSKNAKRVDAIAKRLIAQAPVFRPDAAQWDWQ
                     VNLIDSEELNANCGPGGKIIVYSGLIEQLQLTDAELAAVMGHEIAHALREHSREAMSK
                     AYGTQVATQVGSALLGLGEAGRQMADTGVEYLMTLPNSRSNENEADIIGLELSARAGY
                     DPNAAISLWQKMSKAGGGAPPEFMSTHPSSGSRIAALQAAIPKVMPLYQQARQ"
     gene            1109..3241
                     /locus_tag="VLF16_15020"
     CDS             1109..3241
                     /locus_tag="VLF16_15020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSX72241.1"
                     /translation="MRFKSIQFSVVVLAGASVLAVVVALVVYALFAGSRTQAQVHERT
                     QALLEQVIDQRLVAMAEAQVGKLQRQFQAPMTLAKSLATLNGQMAPGADGAAKVSLSR
                     EELSELVSVYLEQNPELLDLYIGWEPNAFDQDDDLYAGQEAAGYDATGRFMPWWYRDN
                     GQIKVAALSAEQMESEKKLPTGVREGEYYLCPKASKQPCVIDPAAYDYGGKQVLVSSF
                     NAPILVGGEFKGVVGNDLSLDFIQGLLGSANAELYDGAGELALIAANGTLIAATKDAS
                     LIGQPAAKALDAELLQRLEQSSAEAPILLKNDELIELLLPFQVAGTATRWTLAIVLPT
                     SAVFAELQQLQAGLAEQARKDTLGMAVVGLLIAVLGLLVIWFVGYGIARPLRQMVGML
                     DDIAKGDGDLTVRLQVDRADELGQIANGFNTFLNKLQSMIRDVVTSVQRVSDSSEHTA
                     DIAIRTNQGVQRQMAEIDQVATAVQEMSATAQDVARNATQAAEAAHHADRSANDGKRI
                     VEGTANAISALAGEIGRAVSVVQNLAKDSENINAILVAIRGIAEQTNLLALNAAIEAA
                     RAGEQGRGFAVVADEVRNLAQKTQQATEEIQSMIQQLQHGTREVVGVMEQSQARTDDS
                     VQQAQVAAQALENITQAVSVINDMNTQIASAAEEQSAVAEDINRNVTNIGQVAAEVAG
                     GADEASGASAELTKLAEQQRRLINQFRV"
     gene            complement(3353..4057)
                     /gene="ispD"
                     /locus_tag="VLF16_15025"
     CDS             complement(3353..4057)
                     /gene="ispD"
                     /locus_tag="VLF16_15025"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014717241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HSX72242.1"
                     /translation="MSELPAFWVVIPAAGIGSRMRADRPKQYLPLAGRTILEHTLHCF
                     LDHPRLKGLVLSLAADDPWWSALPCADDPRILRAEGGAERADSVLAGLLRLLELGAQP
                     DDWVLVHDAARPNLARSDLDQLLGELADDPVGGLLAVPARDTLKRVGADGRVVETVDR
                     SLIWQAYTPQMFRFAALHRALADALVAGVAVTDEASALEWSGQAPKLVEGRADNLKIT
                     RPEDLEWLRQRWAHKA"
     gene            complement(4054..4335)
                     /locus_tag="VLF16_15030"
     CDS             complement(4054..4335)
                     /locus_tag="VLF16_15030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004421097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation initiator family protein"
                     /protein_id="HSX72243.1"
                     /translation="MSKSPYWLFVALVLVLAGLQYRLWVGEGSLAQVNELKREIDDQK
                     GENERLLERNRILEAEVIELKKGMETVEERARHELGMVKEGETLYQLAE"
BASE COUNT          761 a         1506 c         1489 g          680 t
ORIGIN      
        1 catggagagc ttccgcgccc agctcggcct ggagacccgc ccctacgccg agaaagccct
       61 gccctaatac gaaaaacggc gcccgtgggc gccgttgtcg ttactgcctg gcctgctggt
      121 agagcggcat caccttggga atggccgcct gcagcgccgc aatgcgactg ccagaggacg
      181 ggtgggtgct catgaactcc ggcggcgcgc cgccaccggc cttgctcatc ttctgccaca
      241 ggctgatcgc cgcgttcggg tcgtagccgg cgcgtgccga cagctcgagg ccgatgatgt
      301 ccgcctcgtt ctcgttggag cggctgttgg gcagggtcat cagatattcc acgccggtgt
      361 cggccatctg ccgacccgcc tcccccaggc ccagcagggc cgagcccacc tgggtcgcta
      421 cctgggtgcc gtaggccttg gacatggcct ctcggctgtg ctcgcgcagg gcatgggcga
      481 tctcgtggcc catcaccgcg gccagctccg cgtcggtcag ctgcagctgc tcgatcaggc
      541 cgctgtagac gatgatcttg ccacccgggc cgcagttggc gttgagctcc tcgctgtcga
      601 tcaggttcac ctgccagtcc cactgcgcgg cgtccgggcg gaacaccggg gcctgggcga
      661 tcaggcgctt ggcgatggcg tcgacgcgct tggcgttctt gctgctgcga tccagcacgc
      721 ctttgctcga cgcctcgctg agcgtctgct gataggcctt ggcgtacatg ctgtcgactt
      781 cctgagcgga cagcatgctg aacatgtact gcttgcgctc cacgcccacc gcaccgccgc
      841 tggtggtatt cacggcctgg caggccgtca gcagggaaag accggccacg gccgtcaggc
      901 gaaacagggt gtgcatgaga atcctccggt aatacaggcg ccgtatccta ggccgagccg
      961 cgtccgcgga caacgcttcg gcttgcactc tgaccacggc ccatctttgc tagttgcaga
     1021 gtgcggctaa tgcttgcgcg ccgcacagcc gataagccga taagccgata agccaaggga
     1081 ctggcacaac ccgagatgtg gagtccctat gcgattcaag tccatccagt tttccgtggt
     1141 ggtcctggcc ggtgccagcg tgctggccgt cgtcgtggcg ctggtggtct acgcgctgtt
     1201 cgccggctcg cgcactcagg cccaggtaca cgagcgcacc caggcgctgc tggaacaggt
     1261 catcgaccag cgtctggtgg cgatggccga agcccaggtc ggcaagctgc agcggcagtt
     1321 ccaggcgccc atgacgctgg ccaagtcgct cgccacgctc aacggccaga tggcgcccgg
     1381 cgccgacggc gcggcgaagg tcagcctgag tcgcgaggag ctttcggagc tggtctcggt
     1441 ctatctggaa cagaaccccg agttgctcga cctctacatc ggctgggagc cgaacgcctt
     1501 cgaccaggac gacgatctgt atgccggcca ggaagccgcc ggctacgacg ccaccggccg
     1561 cttcatgccc tggtggtacc gcgacaacgg ccagatcaag gtcgcggcgc tgagcgccga
     1621 gcagatggaa agcgagaaga agctgcccac cggcgtgcgc gagggcgagt attacctgtg
     1681 ccccaaggcc agcaagcagc cctgcgtgat cgacccggcc gcctacgact acggcggcaa
     1741 gcaggtgctg gtctcctcgt tcaacgcacc catcctggtc ggcggcgagt tcaagggggt
     1801 ggtcggcaac gacctgtcgc tagacttcat ccagggcctg ctcggttccg ccaatgccga
     1861 gctgtacgac ggcgccggcg agctggcgct gatcgccgcc aacggcacgc tgatcgccgc
     1921 caccaaggat gcctcactga tcggccagcc ggcggccaag gcgctcgacg ccgagttgct
     1981 gcagcgcctg gagcagagca gcgcggaagc gccgatcctg ctcaagaacg acgagctgat
     2041 cgagctgctg ctgcccttcc aggtggccgg cacagcgact cgctggacac tggccatcgt
     2101 cctgcccacc tcggcggtat tcgccgagct gcagcaactg caggccgggc tggccgagca
     2161 ggcccgcaag gacacgctgg gcatggccgt ggtcggtctg ctgatcgccg tactcgggct
     2221 gctggtgatc tggttcgtcg gctacggcat cgcccgcccg ctgcggcaga tggtcggcat
     2281 gctcgacgac atcgccaagg gcgacggcga cctcaccgtg cgcctgcagg tggaccgcgc
     2341 cgacgagctg ggacagatcg ccaacggctt caacaccttc ctcaacaagc tgcagagcat
     2401 gatccgcgac gtggtcacct cggtgcagag agtgagcgac tcgtcagagc acacggcgga
     2461 catcgccatc cgcaccaacc agggcgtgca gcggcagatg gcggagatcg atcaggttgc
     2521 caccgccgtg caggaaatga gcgccaccgc ccaggacgtg gcgcgcaacg ccacccaggc
     2581 ggccgaggcg gcccatcacg ccgaccgctc ggccaacgac ggcaagcgca tcgtcgaggg
     2641 caccgccaac gccatctccg ccctggccgg cgagatcggc cgcgcggtga gcgtggtaca
     2701 gaacttggcc aaggacagcg agaacatcaa cgccatcctg gtggcgatcc gcggtatcgc
     2761 cgagcagacc aacctgctcg cgctcaatgc ggccatcgag gcggcgcggg ccggcgagca
     2821 gggcagaggc ttcgccgtgg tggccgacga ggtgcgcaac ctggcgcaga agacccagca
     2881 ggccaccgaa gagatccaga gcatgatcca acagctgcag catggcacgc gcgaggtcgt
     2941 gggcgtgatg gagcagagcc aggcgcgcac cgacgacagc gtgcagcagg cgcaggtggc
     3001 ggcccaggcg ctggagaaca tcacccaggc ggtatcggtg atcaacgaca tgaacaccca
     3061 gatcgccagc gccgccgagg aacagagcgc ggtggccgag gacatcaacc gcaacgtcac
     3121 caacatcggc caggtcgccg ccgaggtggc gggcggcgcc gacgaggcca gcggcgccag
     3181 cgccgagctg accaagctgg ccgagcagca gcgccggttg atcaaccagt tccgggtgta
     3241 agacgggaaa agacgggatg ttaaccccgc cttccagtgc atcgaacggt agcccggact
     3301 tcagtccggg actggtgaca gatcccggac tgaagtccgg gctacaccgc tgtcaggcct
     3361 tgtgcgccca gcgctggcgc agccattcca gatcttccgg gcgggtgatc ttcagattgt
     3421 ccgcccttcc ctccaccagc ttcggcgcct ggccggacca ttccagcgcg gaggcctcgt
     3481 cggtcaccgc cacaccggcc accagggcgt cggccagggc gcggtggagt gcagcgaagc
     3541 ggaacatctg cggcgtgtaa gcctgccaga tcaggctgcg gtcgaccgtc tcgacgaccc
     3601 ggccatcggc gccgacgcgc ttgagcgtgt cgcgggccgg cacggcgagc aggccgccga
     3661 ccggatcgtc ggccagttcg ccgagcagct ggtcgaggtc gctgcgcgcc aggttgggcc
     3721 gcgcggcgtc gtgcaccagc acccagtcgt ccggctgcgc gcccagctcg agcaggcgca
     3781 gcaggccggc cagcaccgag tcggcacgtt cggcgccgcc ttcggcgcgg aggatgcggg
     3841 gatcatcggc gcagggcagc gccgaccacc agggatcgtc cgccgccagg ctgagcacca
     3901 ggcccttgag ccgcggatga tcgaggaaac agtggagggt gtgttcgagg atggtccgcc
     3961 cggccagcgg caggtactgc ttgggacggt cggcgcgcat gcgcgagccg atgccggccg
     4021 cggggatcac cacccagaag gcgggaagct cgctcattcg gccaactgat agagggtctc
     4081 gccctctttg accatgccca gctcgtggcg cgcgcgttcc tcgacggttt ccatgccctt
     4141 cttcagctcg atcacttcgg cctcgaggat gcggttgcgc tcgagcaggc gctcgttctc
     4201 gcccttctga tcgtcgatct cacgcttgag ctcgttgacc tgggcgaggc tgccctcgcc
     4261 cacccacaga cggtactgca ggccggccag gaccagcacg agcgcgacga acagccagta
     4321 gggcgacttc gacatggata cggggatttc catatgaaaa gggcagcttg cgctgcccct
     4381 tttaccattc ccggcttagc cgcggaactc ggcgcgaccg cggtacggtg cctttc
//
LOCUS       DATIHC010000905         2210 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_1904, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000905 DATIHC010000000
VERSION     DATIHC010000905.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2210)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2210)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2210
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1904"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..259)
                     /locus_tag="VLF16_15035"
     CDS             complement(<1..259)
                     /locus_tag="VLF16_15035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase N-terminal
                     domain-containing protein"
                     /protein_id="HSX72244.1"
                     /translation="MADYKAPLRDMRFVLNEVFDVSTLWAELPGLAEVVDADTASAIL
                     EEAGKVTGGTIAPLNRSGDEEGCSWNDGVVTTPAGFPEAYRT"
     gene            complement(385..1677)
                     /locus_tag="VLF16_15040"
     CDS             complement(385..1677)
                     /locus_tag="VLF16_15040"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015097093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HSX72245.1"
                     /translation="MPRLAAYRPDHLLTALPLLLAGLAVARMESLSEFFQSLFNVLPT
                     LLLLLGGAFCVVYGRQRELSLLVVVYLAYFLLDTQTDHYRAHGQVRADAALVFHLCSL
                     LLPLLYGLYGAWRERSHLLQDMVARAAVLLAVGGTFLALARRFPEGLQAWLAEVHWPL
                     WHGQWMNLIQLAYPLFLIAGVLLLVQYLRQPRPLHAAQFLGLLGLLWMLPNTFILPHA
                     LQVMSSLVMLMLVAAVVHEAYQMAYRDELTGLPGRRALNDRLERLGRNYVIAMADVDH
                     FKKFNDTHGHDVGDQVLKLVASRLRRVGGGGKAYRYGGEEFTLVFPGKSIDECRAHLE
                     AVRDAVEHYPLQLRDKQQRPRSDKEGRQRRRASGAASVSVTISIGVAEREAHQRGADE
                     VLRSADKALYAAKRAGRNCVVAQGENRRGAVRVKAAVE"
     gene            complement(2014..>2210)
                     /locus_tag="VLF16_15045"
     CDS             complement(2014..>2210)
                     /locus_tag="VLF16_15045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase C-terminal
                     domain-containing protein"
                     /protein_id="HSX72246.1"
                     /translation="DIARLAAEKIAAGTEEEAFYKAKLQTARFYFERILPRTRAHVAT
                     MLSGASNLMEMDEEHFALGY"
BASE COUNT          402 a          730 c          742 g          336 t
ORIGIN      
        1 aggtacggta ggcctcgggg aagccggccg gggtggtcac cacgccgtcg ttccacgagc
       61 agccttcctc gtcgccactg cggttcagcg gggcgatggt gccgccggtg accttgccgg
      121 cctcttcgag gatggcggaa gcggtgtcgg cgtcgacgac ttcggccagg cccggcagct
      181 cggcccacag cgtggaaacg tcgaagactt cattgagtac gaagcgcatg tcgcgcaggg
      241 gagctttgta gtcggccatg gagcgatcct cgggacaagg gaacggccga aagacgcggc
      301 cgattcaaca tgggccggag tctatccgaa cacaatttca ggacataggt tctagttatg
      361 aactgctagt cacgcgccga atggtcactc gaccgccgcc ttcacccgca ccgcgccgcg
      421 tcgattctcg ccctgcgcca ccacgcaatt gcgcccggcg cgcttggccg cgtacagggc
      481 cttgtcggcg ctgcgcagca cttcgtcggc gccacgctga tgcgcctcgc gctcggcgac
      541 gccgatgctg atggtcaccg acacgctcgc cgcgccgctg gccctgcgcc gctgacgccc
      601 ttccttgtcg ctcctgggcc gctgctgctt gtcgcgtagc tgtagcgggt agtgctccac
      661 agcatcgcgc accgcctcca gatgtgcccg gcattcgtcg atcgacttgc cggggaacac
      721 cagggtgaac tcctcaccgc cgtagcgata ggccttgcca cccccgccga cgcggcgcag
      781 gcggctggcg accagcttga gcacctgatc gccgacgtcg tggccatggg tgtcgttgaa
      841 tttcttgaag tgatcgacgt cggccatggc gatcacgtag ttgcggccga ggcgctccag
      901 gcgatcgttc agcgcacgcc gcccgggcag gccggtgagt tcgtcgcgat aggccatctg
      961 gtaggcctcg tgaaccaccg ccgccaccag catcagcatc accaggctgc tcatcacctg
     1021 cagcgcatgc ggcaggatga aggtgttggg cagcatccac agcagcccga gcaggccgag
     1081 gaactgcgcc gcgtgcagcg gccgcggctg gcgcaggtac tgcaccagca gcagtacgcc
     1141 ggcgatcagg aacagcgggt aggcgagctg aatcaggttc atccactgcc cgtgccagag
     1201 cggccagtgc acctccgcca gccaggcctg caggccctcg ggaaaacggc gggccagcgc
     1261 caggaaggtg cccccgacgg cgagcaacac cgcggcgcgg gcgaccatgt cctgcagcag
     1321 atggctgcgc tcgcgccagg cgccgtagag gccatagagc agcggcagca gcaggctgca
     1381 caggtggaac accagcgccg cgtcggcgcg cacctggccg tgggcgcggt agtgatcggt
     1441 ctgggtgtcc agcaggaaat aggcgaggta gaccaccacc agcaacgaca gctcgcgctg
     1501 ccgcccgtag accacgcaga aggcgccacc gagcagcagg agcagggtcg gcaggacatt
     1561 gaacagcgac tggaagaact cgctgagcga ttccatgcgc gccacggcca accccgccag
     1621 cagcagcggc agcgcggtga gcagatggtc gggacggtag gcggcgagac ggggcaaggt
     1681 cagttcgaag tcggccggaa agatgcggca ttttgcctgt atcgagggca aagggcagcg
     1741 gaaatcgctg gcattccgtc gccaggcggc gcacgggacg agccgcgcgc acaaccaacc
     1801 gtcagctccg aagcccggcc ttttatccag ctcacgagag ctcggtctag ccatcccaac
     1861 cgctgatggg attccgaaat gcctgctggc ttcttcccgc cgctgcgcgg accgggctct
     1921 gacccagggc ccgataccgc aagccaaaaa tgccgcgcaa aaaaaaccgc ggcccgagag
     1981 ccgcggttct tctgacctga ggtcggaccg ggcttagtag cccagagcga agtgctcttc
     2041 gtccatttcc atcaggttgc tggcgccgga cagcatggtg gcgacgtgag cacgggtacg
     2101 cggcaggatg cgctcgaagt agaagcgcgc ggtctgcagc ttggccttgt agaaggcctc
     2161 ttcctcggtg ccggcagcaa tcttctcggc agccaggcga gcgatgtcgg
//
LOCUS       DATIHC010000906         2719 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_38941, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000906 DATIHC010000000
VERSION     DATIHC010000906.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2719
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38941"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(4..873)
                     /locus_tag="VLF16_15050"
     CDS             complement(4..873)
                     /locus_tag="VLF16_15050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003302531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HSX72247.1"
                     /translation="MRFDKSFWGACASTTLFVLLWGSGAIFARLGLDHASAFAFLTLR
                     FILALGVLLLIGALVRSCLPARGQRLRTAGTGLLMIGGYSICYLLALDEGITPGVLAT
                     LLGVQPILTLMLLERRFAALRVMGLVLALLGLVLVVWQSIGLALFSAAGMGYALGALL
                     CMTLGAIAQKGLSQSPLQALPLQYGVSLVLCGLFLPLQRVEVDWSLDFLVPLLWLGIV
                     ISVVAQLLLYRLIRAGNLVNVTSLFYLVPGVTAAMDYLFLGNAMSGLSLAGMVAILLG
                     LVLVFRRQPSRVA"
     gene            complement(1274..1525)
                     /locus_tag="VLF16_15055"
     CDS             complement(1274..1525)
                     /locus_tag="VLF16_15055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebG family protein"
                     /protein_id="HSX72248.1"
                     /translation="MAVEVVYRSSRDPERLFMDKAEADRYDKMLELAEAVSEALHKAV
                     PSLNEEQVEELGIFMAKNRDAFAKAFKNQPEALQELETE"
     gene            1748..2179
                     /locus_tag="VLF16_15060"
     CDS             1748..2179
                     /locus_tag="VLF16_15060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019342625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate-starvation-inducible PsiE family
                     protein"
                     /protein_id="HSX72249.1"
                     /translation="MHAMAQSFGNLLVEGFHYLALFGIGGITAWASVTAFLGMLEKGH
                     ITVDDILLLFIYLELGAMVGIYFKTNHMPVRFLIYVAITALTRLLISDVSHHNGPGMG
                     VVYVSGAILLLALAILVVRFASSRFPSVQVSPATGRDVEES"
     gene            complement(2193..>2719)
                     /locus_tag="VLF16_15065"
     CDS             complement(2193..>2719)
                     /locus_tag="VLF16_15065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016713496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSX72250.1"
                     /translation="DREPRELQLREGTFLDDPRLVEQFHRLVALDWHEPGERLLASSL
                     AHEMIGHVLLTQVGLRSGPRLRGGLAPHLRRRLVDYIEQHLDQPLTLGELAHLAALSE
                     YHFARMFGTSFGLPPHRYVLQRRLLRARELLLKGDLPLGEIALACGFASASHFSNRFR
                     QAFGAPPGMLRAAR"
BASE COUNT          494 a          877 c          929 g          419 t
ORIGIN      
        1 gtcctacgcg actcgcgaag gctggcgacg gaacaccagc accagcccca gcagaatcgc
       61 caccatcccg gccaggctca ggccgctcat ggcattgccg aggaacaggt agtccatcgc
      121 cgccgtcacc ccgggcacca gatagaacag gctggtgacg ttaaccaggt tgccggcgcg
      181 gatcagccgg tagagcagca gctgcgccac caccgagatg acgatgccca gccacagcag
      241 cggcacgagg aagtccagcg accagtccac ttcgacgcgc tggagcggca gaaacagccc
      301 gcacagcacc aggctgacgc cgtactgcaa cggcagcgcc tgcagcggcg actggctcag
      361 gcctttctgt gcaatggcgc cgagagtcat gcacagcagc gcgccgaggg cgtagcccat
      421 gccggctgcg gagaaaagcg ccaggccgat gctctgccac accaccagga ccaggccgag
      481 cagggccagt accaggccca tcacgcgcag ggcggcgaag cgccgttcca gcagcatcag
      541 ggtgaggatc ggctgcacgc cgagcagggt cgccagcacc ccgggggtga tgccctcgtc
      601 cagcgccagc aggtaacaga tcgaatagcc gccgatcatc agcaggccgg tgccggccgt
      661 gcgcagacgc tggccgcgag cgggcaggca ggagcgcacg agcgcgccga tcagcagcag
      721 aacgccgagg gcgaggatga agcgcagggt gaggaaggcg aaggccgagg cgtggtccag
      781 gcccaggcga gcaaagatcg cgccgctgcc ccagagcagg acgaacagcg tggtggaggc
      841 gcaggcgccc cagaaggatt tgtcgaaacg catgaagaat cacctgtcga gaagagcaac
      901 aggctccgtc gcggcgcggg cgcagagaag acggaaccgt gaagtcgagt gatcggccgt
      961 gggcggcgag ccgcgtggcg agcgatcagg cgcgggcggg tggcggcgga ggagtgccgg
     1021 cccgacgggc gcagggcggt gcgacaggtg gcggcgcgca cgggcgctcg tcgtggagaa
     1081 cgacgaggca gaactgagcg tgcgcgactg ctttcatgga atacatccag cggtggatag
     1141 cggtgacact aaaccgggcc tggccggtcg gtcaacgagt gggcgggcgg cgccgacgcg
     1201 gcgatggtgc gcacagcgca ccctacatgg cgcagggtgc ggcgtgcgca tcacatcgtc
     1261 tggttcattg cgctcactcg gtttcgagtt cctgcagcgc ctcgggctga ttcttgaacg
     1321 ccttggcgaa ggcatcgcgg ttcttggcca tgaagatgcc gagttcttcc acctgctcct
     1381 cgttgagcga aggcaccgcc ttgtgcaggg cctcggacac cgcctcggcc agctccagca
     1441 tcttgtcgta acgatcggct tcggccttat ccatgaacag acgctccgga tctcgactgc
     1501 tgcggtacac cacttcgacg gccattcatc acctcgttcc cgtgtcatgt gattgatatg
     1561 tatggatata cagtattcca tcgaccccca tttgggcaag cgaaccgccg ccaaggaagc
     1621 attgtccctg atgtcggctg gcctccatcc tgcatagccg ttgtcatgca cgtggtccag
     1681 catgggctgt ccccgaatca aggagcgtga tgtgaattac aagcgagtcg atgccctgcg
     1741 tggcggcatg catgccatgg cccagtcgtt cggcaacctg ctggtggagg gcttccacta
     1801 cctggcgctg ttcggcatcg gcggcatcac cgcctgggcc tcggtgaccg ccttcctcgg
     1861 catgctggag aaggggcaca tcacggtcga cgacatcctg ctgctgttca tctacctgga
     1921 gctgggtgcc atggtcggca tctacttcaa gaccaaccac atgccggtgc gcttcctcat
     1981 ctatgtggcc atcaccgcgc tgacccgcct gctgatctcc gacgtgtcgc accacaatgg
     2041 tcccggcatg ggcgtggtgt atgtctcggg cgccattctg ctgctggccc tggcgattct
     2101 ggtggtgcgt ttcgcctcgt cgcgcttccc ttcggtgcag gtgtcgccgg cgaccgggcg
     2161 ggacgtggaa gaaagctgaa gcgtggcgcc gatcagcgcg ccgcgcggag cattcccggc
     2221 ggtgcgccga aggcctggcg gaagcggttg ctgaagtggc tggcgctggc gaaaccgcag
     2281 gccagagcga tctcgcccag cggcagatcg cccttcagca gaagctccct cgcccgtagc
     2341 aggcggcgct gcagcacata gcggtgcggc ggcaggccga agctggtgcc gaacatgcgc
     2401 gcgaagtggt actcggaaag tgccgccagg tgtgccagtt cgcccagcgt cagcggctgg
     2461 tccaggtgct gctcgatata gtccaccagg cgccgccgca ggtgcggcgc caatcctccc
     2521 ctgagcctcg gcccgctgcg caggccgacc tgggtcagca gcacgtggcc gatcatctcg
     2581 tgggccaggc tgctggccag caggcgctcg ccgggctcgt gccagtccag cgccaccagg
     2641 cggtggaact gctcgaccag acgcggatcg tcgaggaagg tgccctcgcg cagctgcaac
     2701 tcgcgcggct cgcggtcga
//
LOCUS       DATIHC010000907         1541 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_45955, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000907 DATIHC010000000
VERSION     DATIHC010000907.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1541)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1541)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1541
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45955"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..848
                     /locus_tag="VLF16_15070"
     CDS             <1..848
                     /locus_tag="VLF16_15070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014820107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="quinoprotein relay system zinc metallohydrolase
                     1"
                     /protein_id="HSX72251.1"
                     /translation="IAADTWLLEGSTENFAEGNGGNIVNCAFIVTEAGVLVIDSGPSR
                     RYGEALRAAIGEVTEQPVARVLLTHHHPDHVLGNQAFTDMPIAALAGTTELLREQGEA
                     MTENMYRLVGDWMRGTELVLPTETLQPGVLEFGGHRLRLLALSGHTGADLAILDERTG
                     VLFAGDLLFHQRALTTPNSPGLDVWLADLQTLEALPWKLLVPGHGPLAADAAPFVQMR
                     DYLGWLDTLLRGAAARGEDMNEVIRAPIPARFAGISLTRYELIRSVSHLYPRYEAQAL
                     RRIDQ"
     gene            1097..>1541
                     /locus_tag="VLF16_15075"
     CDS             1097..>1541
                     /locus_tag="VLF16_15075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSX72252.1"
                     /translation="MYRPLLAGLFQALAVCCLILALQRGNIGLAVAMPLVVLVAWLPL
                     LLRGRPLPVSAAVGDDESLLRLSRDLSRTTSGNALSAAEVAYSVKQLAQRLASQLQAA
                     ASIVGNAQVMIATEEQTSLLSQRTLEAAQDARRSSDEGLAVLHESI"
BASE COUNT          237 a          553 c          522 g          229 t
ORIGIN      
        1 agatcgccgc cgacacctgg ctgctggagg gcagcacgga gaacttcgcc gagggcaacg
       61 gcggcaacat agtcaactgc gccttcatcg tcaccgaggc gggtgtgctg gtgatcgaca
      121 gcgggccgtc gcggcgctac ggcgaagcgc tgcgcgcggc catcggcgaa gtcaccgagc
      181 agccggtggc gcgggtcctg ctcacccacc atcacccgga ccatgtgctc ggcaaccagg
      241 cgttcaccga catgcccatc gccgcgctgg ccggcaccac cgagctgctg cgcgagcagg
      301 gcgaggcgat gaccgagaac atgtaccgcc tggtgggcga ctggatgcgc ggcaccgagc
      361 tggtgctgcc gaccgagacg ctgcaacccg gcgtgcttga gttcggtggg caccgcctgc
      421 gcctgctggc cctgagcggc cataccggcg ccgacctggc gatcctcgac gagcgcaccg
      481 gcgtgctgtt cgccggcgac ctgctattcc accagcgcgc gctgaccacg cccaacagcc
      541 ccggtctgga cgtctggctg gccgatctgc agaccctcga ggcgctgccg tggaaactgc
      601 tggtgcccgg ccacgggccg ctggccgccg acgccgcgcc cttcgtgcag atgcgcgatt
      661 acctgggctg gctcgacaca ctgctgcgcg gcgccgccgc ccgcggcgag gacatgaacg
      721 aggtgatccg cgcaccgatc cccgcgcgct tcgccgggat cagcctgacc cgctacgagc
      781 tgatccgcag cgtcagccac ctctatccac gctacgaggc acaggccctg cggcgcatcg
      841 accagtaggg tgcgccgtgc gagcaccctg gtggttcgac gaatcaccgc agcccgaccg
      901 atgcgcacga agcgcccctg acccatgacg tagggtgcgc cgtgcgcacc agggggcagg
      961 ggatcggcgc agcctcggtc ggtgcgcacg gcgcacccta cgtcttgccg caccttctac
     1021 gaccaatgtg cgatggccgt ttcgtttcat cggtcgctta atgaccgtac aaccacaata
     1081 acgtccgagg tgcgcgatgt accgacctct gctggccggc ctgttccagg cgttggccgt
     1141 ctgttgcctg atcctggccc tgcagcgagg caatatcggc ctggccgtgg ccatgccgct
     1201 ggtggtgctg gtggcctggc tgccgttgct gctgcgcggc cgcccgctgc ccgtgtcggc
     1261 ggccgtaggc gacgatgaat ccctgctgcg cctgagccgc gacctgtcgc gcaccaccag
     1321 cggcaatgcg ctgtccgccg ccgaggttgc ctattcggtg aagcagctgg cccagcgcct
     1381 ggcctcgcag ctgcaggcgg cggccagcat cgtaggcaac gcgcaggtga tgatcgccac
     1441 tgaggagcaa accagcctgc tcagccagcg caccctcgaa gccgcgcagg acgcccggcg
     1501 cagcagcgac gaggggctgg cggtgctgca cgagagcatc g
//
LOCUS       DATIHC010000908         1963 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18115, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000908 DATIHC010000000
VERSION     DATIHC010000908.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1963)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1963
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18115"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..750
                     /gene="proC"
                     /locus_tag="VLF16_15080"
     CDS             <1..750
                     /gene="proC"
                     /locus_tag="VLF16_15080"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004735 - pyrroline-5-carboxylate
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HSX72253.1"
                     /translation="AQGIPASHIRASDPGAEQRAKVAAEYGIELFEHNAEAIAEADLV
                     VLATKPQVLKDVCQALAPSLRPGQLIVSIAAGITCASLSAWLGEVAIVRCMPNTPALL
                     RQGVSGLYANDKVSATQHAQAEQLLSAVGLALWLDEEALIDAVTAVSGSGPAYFFLLI
                     EAMTAAGEQLGLPRETAARLTLQTALGAARMATESDVDAAELRRRVTSPNGTTEAAIK
                     TFQAGGFEALVQQALNAAADRSAELAEQLGQ"
     gene            764..1354
                     /locus_tag="VLF16_15085"
     CDS             764..1354
                     /locus_tag="VLF16_15085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011336374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HSX72254.1"
                     /translation="MNGLDTAAIYILQTLGSMYLLIVLLRFVLQLVRADFYNPLSQFT
                     VKATQPLLRPLRRIVPGFGGLDLASLLLAILVQLVIMALTLLLAYGTTGNPLQLLVWA
                     LIGVTSLFLKIFFFALIISVILSWVAPGSYNPGAQLVNQICEPLLAPIRKILPSLGGL
                     DLSPIFAFIAINLIDMLVVKNLAAMTHMPSVLGLLM"
     gene            1351..1647
                     /locus_tag="VLF16_15090"
     CDS             1351..1647
                     /locus_tag="VLF16_15090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019095290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF167 domain-containing protein"
                     /protein_id="HSX72255.1"
                     /translation="MSWFRWDGEDLLLDCHLQPKASRDEFAGLHGERLKIRLTAPPVE
                     GKANAQLQAFLAGAFGVAKSQVVLESGELNRQKRVRIRAPRTLPDLPGLTVRPS"
     gene            1789..>1963
                     /locus_tag="VLF16_15095"
     CDS             1789..>1963
                     /locus_tag="VLF16_15095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72256.1"
                     /translation="MSMERLSQQVDAYVAWKRELMREITRYRSWLAHNRLGSDAMDAR
                     LERALRLLRTDHIT"
BASE COUNT          310 a          732 c          610 g          311 t
ORIGIN      
        1 gcccagggca tcccggccag ccacatccgc gccagcgacc ccggtgccga gcaacgcgcc
       61 aaggtggccg ccgagtacgg tatcgagctg ttcgagcaca acgccgaggc catcgccgag
      121 gccgatctgg tggtcctggc gactaagccc caggtgctca aggacgtctg ccaggcgctg
      181 gcgcccagcc tgcgccccgg ccagctgatc gtctccatcg ccgccggcat cacctgcgcc
      241 agcctgagcg cctggctcgg cgaggtggcc atcgtgcgct gcatgcccaa caccccggcc
      301 ctgctgcgcc agggtgtgag cggcctgtac gcgaacgaca aggtgtcggc gacccagcac
      361 gcccaggccg agcagctgct ctcggcggtc ggcctggccc tgtggctgga cgaggaggcg
      421 ttgatcgacg ccgtcaccgc cgtctcgggc agcggcccgg cctatttctt cctgctgatc
      481 gaggccatga ccgccgccgg cgagcagctt ggcctgccgc gcgagaccgc agcgcgcctt
      541 accctgcaga ccgccctcgg cgccgcgcgc atggccaccg agagcgatgt cgatgccgcc
      601 gagctgcgcc gccgggtgac ctcgccgaac ggcaccaccg aggccgccat taagaccttc
      661 caggcgggcg gcttcgaagc cctggtgcaa caggcgctga atgccgccgc cgatcgctcc
      721 gccgaactcg ccgaacaact gggccaataa ggaaccctca tcgatgaacg gactggatac
      781 cgccgccatc tacatcctgc agaccctcgg cagcatgtac ctgctgatcg tcctgctgcg
      841 cttcgtcctg caactggtac gcgccgactt ctacaacccg ctcagccagt tcaccgtaaa
      901 agccacccag ccgctgctgc gcccgctgcg ccggatcgtc cctggcttcg gcggcctcga
      961 cctggcctcg ctgctgctgg cgatcctggt gcaactggtg atcatggcgc tgaccctgct
     1021 gctggcctac ggcaccaccg gcaacccgct gcagctgctg gtgtgggcgc tgatcggcgt
     1081 gacctcgctg ttcctcaaga tcttcttctt cgccctgatc atcagcgtga tcctgtcctg
     1141 ggtcgcgccg ggcagctaca accccggcgc acagctggtg aaccagatct gcgagccgct
     1201 gctggcgccc atccgcaaga ttctgcccag cctgggcggc ctggacctgt cgccgatctt
     1261 cgccttcatc gcgatcaacc tgatcgacat gctggtggtg aagaacctcg ccgccatgac
     1321 ccacatgccc tcggtgctcg gcctgctgat gtgagctggt tccgctggga cggcgaggac
     1381 ctgctcctcg actgccacct gcagcccaag gcgagccgtg atgagttcgc cgggctgcac
     1441 ggcgaacgcc tgaagatccg cctcaccgca ccgccggtgg agggcaaggc caacgcccag
     1501 ctgcaggcct tcctggccgg cgccttcggt gtcgccaaga gccaggtcgt cctcgaaagc
     1561 ggcgagctga accggcagaa gcgcgtgcgc atccgtgcgc cgcgcacgct ccccgacctg
     1621 cccgggctga ccgttcgccc ctcctgaatc gccacccggc cacagatccg cgacgcttcg
     1681 attgacggcc gcgatgacgc ccgcataatg cgggcatctc cggcgaacgg tccgcgcgga
     1741 gcgttgtgcg tttctttcga agccagcacg aaccggagga gtctcggaat gagcatggaa
     1801 cgtctcagcc agcaggtgga tgcctacgtc gcctggaagc gcgagctgat gcgcgagatc
     1861 acccgctacc gcagctggct ggcgcacaac cggctcggct ccgacgccat ggacgcgcgc
     1921 ctggaacgcg ccctgcgtct gctgcgtacc gaccacatca ccc
//
LOCUS       DATIHC010000909         2780 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_15827, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000909 DATIHC010000000
VERSION     DATIHC010000909.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2780)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2780)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2780
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15827"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..454
                     /locus_tag="VLF16_15100"
     CDS             <1..454
                     /locus_tag="VLF16_15100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016494801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX72257.1"
                     /translation="FWIELPSAAEPHAADESQPPAEQPRRQPLARVLCVEDHPACLRV
                     LQEGLRDIAVVSGAGSVRRALLQLAEETPALVLLDLDLPDGSGLEVLEYMRGEPRLAE
                     VPVLVVSAAADEELLAETRARGARASLLKPVDLQQLRQLALTLLGERG"
     gene            complement(455..700)
                     /locus_tag="VLF16_15105"
     CDS             complement(455..700)
                     /locus_tag="VLF16_15105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017678048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72258.1"
                     /translation="MRRLFLFCSTLLLSTSLWAMHCPQDMAKIDEMLKTDPPADAEVL
                     AEVKRLRAEGEQLHKDGNHSESVKVLDEALNLLQASE"
     gene            complement(776..1048)
                     /locus_tag="VLF16_15110"
     CDS             complement(776..1048)
                     /locus_tag="VLF16_15110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003299452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72259.1"
                     /translation="MKRTALIFACALAASPAFANDDLCTTNLQKIDDKMASETALGEA
                     MKQQITDLHKQAKDAQQAGDMEGCAGYAGQAVTLLEKASKGDGPAQ"
     gene            complement(1111..>2780)
                     /locus_tag="VLF16_15115"
     CDS             complement(1111..>2780)
                     /locus_tag="VLF16_15115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003288740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HSX72260.1"
                     /translation="AVRQTGTTVIIEDVTFPVERLAEGVNRLIALLEKHRYDEAILFG
                     HALEGNLHFVFTQGFDDPVQVARYEAFMQDVAQLVAVEFGGALKAEHGTGRNMAPFVE
                     LEWGSEAYQLMWTIKRLFDPLGILNPDVVLSDDPQIHLKHLKPLPAADEIVDKCIECG
                     FCEPVCPSRGLTLTPRQRIVIWRDIQARKRAGIDTTELEAAYHYQGVDTCAATGLCSQ
                     RCPVGINTGDLVRKLRARDAEHAGAATWLAGHFATTLRGARLTLRLADGARRLLGAPL
                     LGKTARALHDKAGLPLWTPAMPQAAQPIRFTAPSRDERPRVVYLAACVSRAMGPAFGD
                     AEQTPLIDKTRALLEKAGYQVVFPDDQNNLCCGQPFASKGYAEQAAAKQRELVDALLA
                     ASRGGLDPIYCDTSPCTLRLVQEGLDERLRLYDPVRFIREYLLERLDFTPQDKPVAVH
                     VTCSTQHLGEAQGLIDIARRCAREVVIPEGIHCCGFAGDKGFTTPELNAHSLRSLKDA
                     VQFCEEGISTSRTCEIGLSTHSGIDYHGLVYLVDRVTRAKNSEPSPH"
BASE COUNT          393 a          904 c         1006 g          477 t
ORIGIN      
        1 cttctggatc gaactgccca gcgccgccga gccgcatgcg gcggacgaga gccagccgcc
       61 ggccgaacag cccaggcgcc agccgctggc gcgggtgttg tgcgtcgagg accacccggc
      121 ctgtctgcgg gtgctgcagg aagggttgcg cgacatcgcc gtggtgagcg gggcgggctc
      181 ggtgcgccgg gcgctgctgc agctggccga agaaaccccg gcgctggtgc tgctggacct
      241 cgatctgccg gacggcagcg ggctggaggt gctggaatac atgcgcggcg aaccgcgact
      301 ggccgaggtg ccggtgctgg tggtcagcgc cgcggctgac gaggaattgc tggcggaaac
      361 ccgggccagg ggcgcccgcg ccagcctgct gaaaccggtg gatctgcagc agctgcgcca
      421 gctcgcgctg acgctgctgg gcgagcgagg ctgactactc gctggcctgc agcaggttca
      481 gcgcctcgtc cagcaccttc accgactcgc tgtgattgcc atccttgtgc aactgctcgc
      541 cctcggcgcg caggcgcttc acttcggcca gcacctcggc gtcggccggc gggtcggtct
      601 tgagcatttc gtcgattttg gccatgtcct gcgggcagtg catggcccac agagaagtgc
      661 tgagcagcag ggtggagcag aaaagaaaga gccggcgcat ggtgagtcct cctgggaagg
      721 tggactcagt atagaagcgg gcgtggcgcc cgctgggtcg ccggctctgc gaccgttact
      781 gagccgggcc gtcgcctttg gacgccttct ccagcagggt cacggcttgc ccggcgtagc
      841 cggcgcagcc ttccatgtcg ccagcctgct gcgcatcttt ggcctgcttg tgcaggtcgg
      901 tgatctgctg cttcatggct tcgcccagag cggtctcgga cgccatcttg tcgtcgatct
      961 tctgcaggtt ggtggtgcac aggtcgtcgt tggcgaatgc cggcgaggcg gccagggcac
     1021 aggcgaaaat cagggcagta cgcttcatcg aggttctcct cttcagtcgt cgaagcgagc
     1081 ccgtagcggg cccgtatgca gtcgactgag ctagtgcggg ctcggttcag agttttttgc
     1141 ccgggtcacc cggtccacca ggtagaccag gccgtggtag tcgatgccgc tgtgggtcga
     1201 caggccgatc tcgcaggtgc ggctggtgga gatgccttcc tcgcagaact gcaccgcgtc
     1261 cttcagcgag cgcagcgaat gggcgttcag ttccggcgtg gtgaagccct tgtcgccggc
     1321 gaagccgcag cagtggatgc cctccgggat caccacttct cgggcgcagc gcctggcgat
     1381 gtcgatcagc ccctgggcct cgcccagatg ctgggtggag caggtcacgt gcacggccac
     1441 cggcttgtcc tgcggcgtga agtccagacg ctccagcagg tattcgcgga tgaacctcac
     1501 cgggtcgtac agtcgcaggc gttcatccag gccttcctgc accaggcgca gggtgcaggg
     1561 gctggtgtcg cagtagatcg ggtcgagccc gccgcggctg gcggcgagca gggcgtcgac
     1621 cagctcccgc tgtttggcgg cggcctgctc ggcatagccc ttggaggcga acggctggcc
     1681 gcagcacagg ttgttctggt cgtccgggaa caccacctgg taaccggcct tctccagcag
     1741 ggcgcgggtc ttgtcgatca gcggcgtctg ctccgcatcg ccgaacgccg ggcccatggc
     1801 gcgtgacacg caggccgcga ggtacaccac ccgcggtcgc tcgtcgcggc tcggcgcggt
     1861 gaagcggatc ggctgcgccg cctgtggcat ggccggcgtc cacagtggca gccctgcctt
     1921 gtcgtgcagc gcccgcgccg tcttgcccag cagcggtgcg ccgagcaggc gtcgtgcgcc
     1981 gtcggccagg cgcagggtca ggcgcgcgcc gcgcagggtc gtggcgaaat ggccggccag
     2041 ccaggtggcc gcgccggcat gctcggcgtc gcgggcgcgc agcttgcgca ccaggtcgcc
     2101 ggtgttgatg cccaccgggc agcgctgcga gcacaggccg gtggcggcgc aggtgtccac
     2161 gccctggtag tggtaggccg cttccagctc ggtggtgtcg atgccggcgc gtttgcgtgc
     2221 ctggatatcg cgccagatga cgatgcgctg gcgcggcgtc agggtcagtc ccctggacgg
     2281 gcagaccggc tcgcagaagc cgcactcgat gcacttgtcg acgatctcgt cggcggccgg
     2341 caggggcttg aggtgcttca ggtggatctg cggatcgtcc gacagcacca cgtccgggtt
     2401 gaggatgccc agcgggtcga acaggcgctt gatggtccac atcagctggt aggcctcgct
     2461 gccccattcc agctcgacga agggcgccat gttgcgcccg gtgccgtgct cggccttgag
     2521 cgcgccgccg aactccaccg ccaccagctg cgccacgtcc tgcatgaagg cctcgtaacg
     2581 cgcgacctgg accggatcgt cgaagccctg ggtgaagacg aagtgcagat tgccctccag
     2641 ggcgtggccg aacaggatgg cctcgtcata gcggtgcttt tccagcagcg cgatcaggcg
     2701 gttgacgccc tcggccaggc gctccaccgg gaaggtgacg tcctcgatga tcaccgtggt
     2761 gccggtctgg cgcacggcgc
//
LOCUS       DATIHC010000910         2533 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27539, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000910 DATIHC010000000
VERSION     DATIHC010000910.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2533
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27539"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1859)
                     /locus_tag="VLF16_15120"
     CDS             complement(<1..1859)
                     /locus_tag="VLF16_15120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013790933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1302 domain-containing protein"
                     /protein_id="HSX72261.1"
                     /translation="MTASSLARRQRPTLSFAFAGLASTFALAPIAQAVEFELANGEVT
                     GTLDTTLSYGQVWRVQGQAKDNDAANGNDGNRNFDTGLASEVFKITSELEARYQDYGL
                     FVRGSAFYDTQIMDKRSDYYNNAAFAEPSQNYPNNDRFTEDTRHTSGRSADILDAYLY
                     GSWDVLGLPLSARVGRQVFNWGEGLFYRGVAVSNPLDAAKYRLPGSQVKEVIIPVEAL
                     SFNLGLTDSLNLEAYYQLKWQETAMDPVGSYYSTTDIFGAGGEAGYATVPALIPAIAA
                     YDLASGLPGGLGTGPYDSTRYLDPATGTFKVGNVVADDEARDSGQFGIALHYIAESLN
                     YTDFGFYFANYHTKEPVQQVEFGAYQGIDMATLGGIIGAPAAQALATLDLSQNAQVRR
                     RYVEDVRMLGTSFSTTIGNASVFGELAYRPNLPIAITATNDIVGDLVAQGVAGVSSIY
                     DGNIAGSAACAQVAGQQLCRSGHVANYERVEAFNASLGTIYLFGPTLGFDALVGVAEV
                     ATEQLHGSSLSYIGYAPTAERRKFAGTPDIAGETVDRESYGYTVTARGTWNNVYAGVN
                     LSPFIVHSHDFKGNSHLTGSFMEGRKAYTFGVRADYLGRFEAGVQYTVFTGAGS"
     gene            2212..>2533
                     /locus_tag="VLF16_15125"
     CDS             2212..>2533
                     /locus_tag="VLF16_15125"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HSX72262.1"
                     /translation="MAARREAFLQAGIRLFGSAGYRATTVRDLCAEAKLTDRYFYESF
                     GGTEDLLCAAYTAVMSEMEQKIGQQMQELGADSPEARRAVLRTFFEAMRKPAVARIVL
                     VEVLG"
BASE COUNT          425 a          753 c          910 g          445 t
ORIGIN      
        1 gagccggcac cggtgaagac ggtgtactgc acgccggcct cgaaccgccc gaggtagtcg
       61 gcccgcacac cgaaggtgta ggccttgcgt ccttccatga agctgccggt gaggtgcgaa
      121 ttgcccttga agtcgtggct gtggacgatg aacggcgaca ggttgacccc ggcgtagacg
      181 ttgttccagg tgccgcgggc ggtgacggtg tagccgtagg attcgcggtc cacggtttcg
      241 ccggcaatgt ccggggtgcc ggcgaacttg cggcgctccg cggtgggcgc gtagccgatg
      301 tagctcaggc tgctgccgtg cagttgctcg gtggccactt cggccacgcc caccagggcg
      361 tcgaaaccga gcgtggggcc gaagaggtag atggtgccga gggaggcgtt gaacgcctcg
      421 acgcgctcgt aattggccac gtggccggag cggcacagct gctgcccggc cacctgcgcg
      481 caggccgcgg aaccggcgat gttgccgtcg tagatcgacg acacgccggc gacaccctgg
      541 gccaccagat cgccgacgat gtcgttggtg gcggtgatgg cgatgggcag gttgggccga
      601 taggccagtt cgccgaacac cgaggcattg ccgatggtag tgctgaagct ggtgccgagc
      661 atgcgcacgt cttcgacgta gcgacggcgc acctgggcat tctgcgacag gtcgagggtc
      721 gccagcgcct gggcggccgg cgcgccgatg atgccgccga gggtcgccat gtcgatgccc
      781 tggtaggcgc cgaactcgac ttgctgcacc ggctccttgg tgtggtagtt ggcgaagtag
      841 aaaccgaagt ccgtgtagtt cagcgattct gcgatgtagt gcagggcgat gccgaactgg
      901 ccgctgtcgc gggcctcgtc gtccgccacc acgttgccga ccttgaaggt gcccgtggcc
      961 gggtcgaggt agcgggtgga atcgtacggg ccggtgccca ggccgcccgg cagcccgctg
     1021 gcgaggtcgt aggcggcgat cgccgggatc agcgcgggca cggtcgcgta gcccgcctcg
     1081 ccgccggcgc cgaagatgtc ggtggtgctg tagtaggagc cgaccgggtc catggccgtt
     1141 tcctgccact tcagctggta gtaggcctcc aggttcagcg agtcggtcag gcccaggttg
     1201 aagctcagcg cctccaccgg aatgatcact tccttgacct gcgagccggg caggcggtac
     1261 ttggcggcgt ccagcgggtt ggacacggcg acgccgcgat agaacaggcc ctcgccccag
     1321 ttgaagacct ggcgccccac gcgggcggac agcggcagcc cgagcacgtc ccaggagccg
     1381 tagaggtaag cgtcgaggat gtcggcggaa cggccggagg tgtgccgggt gtcctcggtg
     1441 aagcggtcgt tgttcgggta gttctggctc ggctcggcga acgcggcgtt gttgtagtag
     1501 tcgctgcgct tgtccatgat ctgcgtgtcg tagaaggccg agccgcgaac gaacagcccg
     1561 tagtcctggt aacgggcctc cagttcggac gtgatcttga acacctcgga cgccagcccc
     1621 gtatcgaaat tgcgattgcc gtcgttgccg ttggccgcgt cgttgtcctt ggcctgcccc
     1681 tgcacgcgcc agacctggcc gtacgagagg gtggtgtcga gggtgccggt gacctcgccg
     1741 ttggcgagct cgaattcgac cgcctgcgcg atcggcgcca gggcgaaggt ggaagccagc
     1801 ccggcgaatg caaaactgag tgtcgggcgc tgccgacggg ccaaggagga cgctgtcatg
     1861 gtactgctcc acaggtattg tttttgtttt ctgccccgcg cacaggcggg tgcatcgcac
     1921 gtgtcatcga ggcaatcaca tctgacgaca aacaatgtca agatgcgttc atgacgatcc
     1981 ggtgtcaatc atcgcaaggg gatgggcatt ctgttcattg gtggattttg ttgcctgaat
     2041 tagagcattt acgtccgcga agcgtgggtt taacagctgt acgcggcgcg gattgagccg
     2101 cacgttacaa attgactaca atcgccagca gaacacgaca gagaacgaga aatgagcaaa
     2161 gcgaccggga gcggcgagcg ctcctacaga ggggtgagtc aggagcaacg ggtggcggcc
     2221 agacgcgagg ccttcctgca ggccggcatc cgcctgttcg gctcggcggg ctaccgcgcc
     2281 accacggtgc gcgacctgtg cgccgaggcg aagctgaccg accggtactt ctacgaatcc
     2341 ttcggcggca ccgaggatct gctctgcgcg gcctacaccg ccgtgatgag cgagatggaa
     2401 cagaagatcg gccagcagat gcaggagctc ggcgccgact ctccagaggc gcggcgagcg
     2461 gtgctgcgga cgttcttcga ggccatgcgc aagcccgcgg tcgcgcgcat cgtgctggtc
     2521 gaggtgctgg gcg
//
LOCUS       DATIHC010000911         2118 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_15832, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000911 DATIHC010000000
VERSION     DATIHC010000911.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2118
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15832"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..299
                     /locus_tag="VLF16_15130"
     CDS             <1..299
                     /locus_tag="VLF16_15130"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008082427.1"
                     /note="Catalyzes the synthesis of acetoacetyl coenzyme A
                     from two molecules of acetyl coenzyme A. It can also act
                     as a thiolase, catalyzing the reverse reaction and
                     generating two-carbon units from the four-carbon product
                     of fatty acid oxidation; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HSX72263.1"
                     /translation="PATAKLLERDKMAIDDIDLFEVNEAFASVVGAWQKEHSADMSKV
                     NVNGGAIALGHPIGASGCRVLVTLLHEMIKRDAKKGLATLCIGGGQGVALAIER"
     gene            479..1492
                     /locus_tag="VLF16_15135"
     CDS             479..1492
                     /locus_tag="VLF16_15135"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007924670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSX72264.1"
                     /translation="MSSLDQALSAALDARQPLLAELHEQQTDCYRLFHGSQEGAPGLT
                     VDRYGPQLMVQSFHQPLQLDALLDLHTAINERLGLDLQLVYNDRSGGNSRIDRRDPVY
                     PATPEALEDQVGQEWGLNYRVRGRHPGQDPLLFLDLRNARGWIKANSAGKHVLNLFAY
                     TCGVGLCAAAGGAREVLNLDFAEGNLAVGRENLALNPGLAMDFVQSDYFPAIRQLAGL
                     PIAARRGQKLPSYPRLEQRQFDLVLLDPPAWAKSAFGTVDLLRDYQSLLKPAILATAE
                     NGVLICCNNLAKVELEEWRGQVLRCAEKLGRPVRQCEQILPAADFPSRDGRPPLKTLA
                     LHF"
     gene            1660..>2118
                     /locus_tag="VLF16_15140"
     CDS             1660..>2118
                     /locus_tag="VLF16_15140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003121074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72265.1"
                     /translation="MPKGLKRTLYALTLALGFYSLLGFLILPGVAQRVANQQLAHWAT
                     VPGHLERVEFNPFSLELRLWGLRLGEADQQQVAFQRLYANLQADSLWSGSLHLVEVQL
                     EKAHTEVLFAQDGALNLASLFRLPPSEEAPADEAPSEPFPLRIDSIRLIEN"
BASE COUNT          354 a          795 c          663 g          306 t
ORIGIN      
        1 tccccgcgac ggccaagctg ctggagcgcg acaagatggc gatcgacgac atcgacctgt
       61 tcgaggtcaa cgaggcgttc gcctcggtcg tcggcgcctg gcagaaggag cacagcgccg
      121 acatgagcaa ggtcaacgtc aacggcggcg ccatcgccct cggccacccc atcggcgcct
      181 ccggctgccg cgtgctggtc accctgctgc acgagatgat caagcgcgat gccaagaagg
      241 gcctcgccac cctgtgcatc ggcggcgggc agggcgtagc gctggccatc gaacgctaaa
      301 cgtcgcgccc atcgcccgca tttgcggcgt cggcggccct tgccgtaggc ggtctactgt
      361 ctgcgcaccg cctccttgcg actacgagcg ctgtacacga ctgacagcga agtaacgccg
      421 gcctggagcc ggcgtttttc ttggtaaact gcgcgccctc ccgttccgag acgccgccat
      481 gtcctctctc gaccaggcgc tctccgccgc cctcgatgcc cgccagccgc tgctggccga
      541 actgcatgag cagcagaccg actgctaccg cctgttccac ggcagccagg aaggcgcacc
      601 cggcctcacg gtcgaccgct acggcccgca actgatggtg cagagcttcc atcagccact
      661 gcagctcgat gccctcctcg acctgcacac cgccatcaac gagcgcctcg gcctcgacct
      721 gcagctggtc tacaacgacc gctccggcgg caactcgcgc atcgaccgcc gcgacccggt
      781 gtacccggcc acgcccgagg cgctggaaga ccaggtcggc caggaatggg ggctcaacta
      841 ccgggtacgc ggccgccatc cgggccagga cccgctgctg ttcctcgacc tgcgcaacgc
      901 acgcggctgg atcaaggcca acagcgccgg caagcacgtg ctcaacctgt tcgcctacac
      961 ctgcggcgtc ggcctgtgcg ccgcggccgg tggtgcgcgc gaggtgctca acctggattt
     1021 cgccgagggc aacctggcgg tgggccgcga gaacctggcg ctcaatccgg ggctggcgat
     1081 ggacttcgtg cagtccgact acttccccgc catccgccag ctggccggac tgcccattgc
     1141 cgcacgccgt gggcagaagc tgccgagcta cccgcgcctg gaacagcgcc agttcgacct
     1201 ggtgctgctc gacccgccgg cctgggccaa gagcgccttc ggcaccgtcg acctgctgcg
     1261 cgactaccag agcctgctca agccggcgat cctcgccacc gccgagaatg gcgtgctgat
     1321 ctgctgcaac aacctggcaa aggtcgaact ggaggaatgg cgcggccagg tgctgcgctg
     1381 cgccgagaag ctcggccgcc cggtgcgcca gtgcgagcag atcctcccgg ccgccgactt
     1441 cccctcgcgc gacggcaggc cgccgctgaa gaccctggcc ctgcatttct gacccgtcgc
     1501 aaacccgacg actcatccgg tcgcggcccg cggacgacgg gcccggcagc cgcaaagtgg
     1561 cgcccgagac gggccgccag gtgagaccga tggcccacaa agccacaatg cccatgccat
     1621 actccaggct ccgcagcctg gaaagatgac gccgtaccca tgcccaaagg actgaaacgc
     1681 accctctacg cgctcaccct cgccctcggc ttctacagcc tcctcggctt cctgatcctg
     1741 cccggcgtgg cacagcgcgt ggccaaccag cagctggcgc actgggccac ggtgccgggg
     1801 cacctggaac gggtggaatt caatcccttc agcctggagc tgcgcctgtg gggcctgcgt
     1861 ctcggcgagg ccgaccagca gcaggtcgcc ttccagcggc tgtacgccaa cctgcaggcg
     1921 gacagcctgt ggagcggctc cctgcacctg gtcgaggtac agctggagaa ggcgcatacc
     1981 gaggtgctgt tcgcccagga tggcgccctc aacctcgcca gcctgttccg cctgccgccg
     2041 agcgaggaag cgccggccga cgaggcgccg agcgagccct tcccgctgcg catcgacagc
     2101 attcgcctga tcgagaac
//
LOCUS       DATIHC010000912         1515 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_1955, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000912 DATIHC010000000
VERSION     DATIHC010000912.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1515
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1955"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            129..965
                     /locus_tag="VLF16_15145"
     CDS             129..965
                     /locus_tag="VLF16_15145"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HSX72266.1"
                     /translation="MSAPINHIVFIIMDSCRYDSCVAARTPNIERVGQVEKRYSYASW
                     TAPSHYAFTMGMLPHSTPREVYASEVYKEEFVQWVERTGIADVSFRDFIPELSLPKVL
                     GQLGYRTVARVSMPVLNQQTAINQHFDDYKLMGNHNDFAGMVEEMTFPEDEPHYYFLN
                     LGETHYPYMLKDENLPRISGVHGVFKSLGGEAQHNAADSEAFFDQEQMEMLRQQQVRC
                     VEYVDGLIGKLMEKAPANTWFIITADHGELFGEDGYFGHGPIMHEKCFEVPFVEGFAG
                     KA"
     gene            965..>1515
                     /locus_tag="VLF16_15150"
     CDS             965..>1515
                     /locus_tag="VLF16_15150"
                     /inference="COORDINATES: protein motif:HMM:NF024860.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HSX72267.1"
                     /translation="MRQPLFILALPRSYTSLIAGMLGQHPQAYGLPELNLFTVDRLIE
                     MWQDGPDKTGMSRFQRHGILRAVAQIYAGEQSSAAVVMANHWVAARHSRSGMQVFREI
                     ADAVSPLMAIDKSPAHVVSPVFLQRIYDAYPDAFYLHLTRHPTNQGHSVMKIQDGGYA
                     LSVNSIDYCDGEAVIDPQIAWHD"
BASE COUNT          293 a          506 c          466 g          250 t
ORIGIN      
        1 gagccaagga atggacaccc agccgaaccg cagcagcctg caggcccgcc agatagcggg
       61 gcttggccga tgccttccca gcgcccttcg ctgagccgac ccgcccccta tccccagaga
      121 ggacaaccat gagcgcgccc atcaaccaca tcgttttcat catcatggac agctgccgct
      181 acgactcctg cgtggcagcg aggacgccga acatcgagcg cgtcggccag gtggaaaagc
      241 gctattccta cgcctcctgg acggcgcctt cgcactacgc cttcaccatg ggcatgctgc
      301 cgcacagcac gccacgcgag gtgtacgcct ccgaggtgta caaggaagaa ttcgtccagt
      361 gggtagagcg caccggcatt gccgacgtgt cgttccgcga tttcatcccc gagctgtcgc
      421 tgcccaaggt gcttggccag ctcggctacc gcacggtggc gcgggtgtcg atgccggtgc
      481 tgaaccagca gaccgcgatc aatcagcact tcgatgacta caagctgatg ggcaaccaca
      541 acgacttcgc cggcatggtc gaggagatga ccttccccga ggacgagccg cactactact
      601 tcctcaacct cggcgaaacc cactacccct acatgctcaa ggacgagaac ctgccgcgca
      661 tttccggcgt gcacggggtg ttcaagagcc tgggcggcga ggcccagcac aacgccgcgg
      721 acagcgaggc gttcttcgat caggagcaga tggagatgct gcgccagcag caggttcgct
      781 gcgtggaata cgtcgacggg ctgatcggca agctgatgga gaaggcgccg gcgaacacct
      841 ggttcatcat caccgccgat cacggcgagc tgttcggcga ggacggctac ttcggccacg
      901 gcccgatcat gcacgagaag tgcttcgagg tgcccttcgt cgaaggcttc gcgggcaagg
      961 cctgatgcgc cagccgctgt tcatcctggc cctgccgcgg tcttacacct cgctgatcgc
     1021 cggcatgctc ggccagcatc cgcaggccta cgggctgccg gagctgaacc tgttcaccgt
     1081 cgatcggctg atcgagatgt ggcaggacgg cccggacaag accggcatgt cgcgctttca
     1141 gcgccacggt atcctgcgcg cggtggcgca aatctatgcc ggcgaacaga gcagcgccgc
     1201 cgtggtgatg gccaaccact gggtggcggc gcggcatagc cgcagcggca tgcaggtgtt
     1261 tcgcgagatc gccgacgcgg tatcgccgct gatggccatc gacaagagtc cggcccacgt
     1321 ggtcagcccg gtgttcctgc agcgcatata cgatgcctat ccagacgcct tctacctgca
     1381 cctgacgcgg catccgacca accagggcca ctcggtgatg aagatccagg acggtggcta
     1441 cgccctgtcg gtgaactcca tcgactactg cgacggcgag gccgtcatcg atccgcagat
     1501 cgcttggcac gacat
//
LOCUS       DATIHC010000913         2322 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_25123, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000913 DATIHC010000000
VERSION     DATIHC010000913.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2322)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2322)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2322
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25123"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..138
                     /locus_tag="VLF16_15155"
     CDS             <1..138
                     /locus_tag="VLF16_15155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007249142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HSX72268.1"
                     /translation="GFALIDCQMPTQHLHSFGARPITRQAFAHYLQRYLDQPSGADWR
                     P"
     gene            206..913
                     /locus_tag="VLF16_15160"
     CDS             206..913
                     /locus_tag="VLF16_15160"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004057 - arginyl-tRNA--protein
                     transferase activity [Evidence IEA];
                     GO_function: GO:0008914 - leucyl-tRNA--protein transferase
                     activity [Evidence IEA];
                     GO_process: GO:0016598 - protein arginylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HSX72269.1"
                     /translation="MTELARLKFYATQPHPCSYLPEEQATTLFLDPSQPMDVQVYAEL
                     SEMGFRRSGDHLYRPHCQRCTACVPARIPADQFIPTRQQKRILKRNADIEVHAVRPAF
                     NEEYYALYVRYIEQRHADGDMYPPSRDQFSTFLVRDLPFARFYEFRLSGRLVAVAVTD
                     VLPNGLSAVYTFYDPDEERRSLGRFAILWQIGETARLGLQAVYLGYWIKNCRKMSYKT
                     QYRPIELFVNQRWVVLT"
     gene            1037..1255
                     /gene="infA"
                     /locus_tag="VLF16_15165"
     CDS             1037..1255
                     /gene="infA"
                     /locus_tag="VLF16_15165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011217896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HSX72270.1"
                     /translation="MSKEDSFEMEGTVVDTLPNTMFRVELENGHVVTAHISGKMRKNY
                     IRILTGDKVRVELTPYDLSKGRITYRAR"
     gene            complement(1323..>2322)
                     /locus_tag="VLF16_15170"
     CDS             complement(1323..>2322)
                     /locus_tag="VLF16_15170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSX72271.1"
                     /translation="IEVAQVEDIVAKIARIPPKHVSSSDKELLRNLERDLKLTVFGQD
                     AAIDSLSTAIKLSRAGLKAPDKPVGSFLFAGPTGVGKTEVARQLAKAMGIELVRFDMS
                     EYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKQPHCVLLLDEIEKAHPEVFNLLLQV
                     MDHGTLTDNNGRKADFRNVILIMTTNAGAETAARASIGFTQQDHSTDAMEVIKKSFTP
                     EFRNRLDTIIQFGRLTHETIKSIVDKFLTELQAQLEDKRVQLEVSDAARSWLAEGGYD
                     VQMGARPMARLIQDKIKRPLAEEILFGELAEHGGLVHVDLEDGELRFEFETTAEPA"
BASE COUNT          413 a          784 c          666 g          459 t
ORIGIN      
        1 ggcttcgccc tgatcgactg ccagatgccg acccagcacc tgcacagctt cggcgctcgc
       61 cccatcacgc gccaggcgtt cgcccattac ctgcaacgct atcttgatca acccagcggc
      121 gcggactggc gcccgtgatc ctgccttgtg gtaggcgccc ggaggctgac atacacttgc
      181 ccgaggggta tcccgaggac cgaccatgac cgagctggct cgcctcaagt tctacgccac
      241 tcagccacat ccatgcagct acctgcccga ggaacaggcc accaccctgt ttctcgatcc
      301 cagtcagccc atggacgtgc aggtgtatgc cgaactctcg gagatgggct ttcgtcgcag
      361 cggcgatcac ctctaccgcc cccactgcca acgctgcacc gcctgcgtgc cggcgcgcat
      421 tcccgccgat cagttcattc caacccgtca gcagaagcgc atcctcaagc gcaacgccga
      481 catcgaggtg cacgccgtac gcccggcgtt caacgaggag tattacgccc tctacgtgcg
      541 ctacatcgaa cagcgccatg ccgatggcga catgtatccg cccagccgcg atcagttcag
      601 cacctttctg gtccgcgacc tgccgtttgc gcgcttctac gagttccgtc tgtccggccg
      661 cctggtcgcg gtcgccgtta ccgatgtgct gcccaacggc ctttcggcgg tctacacctt
      721 ctacgatccg gacgaagagc gccgaagcct gggacgcttc gccattctct ggcagatcgg
      781 agaaaccgca cgcctcggcc tgcaggctgt ctatctcggc tactggatca agaactgccg
      841 gaagatgagc tacaagaccc agtaccgccc tatcgagctg ttcgtcaacc agcgctgggt
      901 cgtactgacc tgagccgacc acctcccgac tttccagcca cttggcggcc ctgacccttt
      961 tcgggcacaa tgcacgccgc ttttgcctgg gcgccgttgc gccaggccaa tctttggata
     1021 ccgagggctt tactgcatgt cgaaagaaga cagcttcgaa atggaaggta ctgtcgtcga
     1081 caccctgccc aacaccatgt tccgagtgga gttggaaaac gggcacgtcg ttaccgcgca
     1141 catctccggc aagatgcgca agaactacat ccgcattctg actggcgaca aggtccgcgt
     1201 tgaactgacg ccctatgacc tgagcaaggg ccgcatcacc tatcgcgccc gctgattccc
     1261 accacgcgga atccgaatgc agaaacgccc ggcattgccg ggcgttttcg tttgcctgcc
     1321 gatcaggctg gctcggcagt cgtctcgaat tcgaagcgta gttcgccatc ttcgaggtcg
     1381 acatgcacca ggccaccgtg ctcggccagt tcgccgaaca ggatttcctc ggccagcgga
     1441 cgcttgatct tgtcctggat cagccgcgcc atcggccgcg cacccatctg cacgtcgtag
     1501 ccaccttccg ccaaccagct gcgcgccgcg tcgctgactt ccagctgcac ccgcttgtcc
     1561 tccaattgcg cctgcagctc ggtgaggaac ttgtcgacga tactcttgat ggtttcgtgg
     1621 gtcaggcggc cgaactggat gatcgtatcc aggcggttgc ggaactccgg cgtgaagctc
     1681 ttcttgatta cttccatggc atcggtggaa tgatcctgct gggtgaagcc gatcgacgcc
     1741 cgcgccgcgg tttccgcccc ggcgttggtg gtcatgatca ggatcacgtt gcggaagtcg
     1801 gccttgcgtc cgttgttgtc ggtcagggtg ccatggtcca tcacctgcag cagcaggttg
     1861 aagacctcgg ggtgagcctt ctcgatctcg tcgagcagta gcacgcaatg cggctgcttg
     1921 gtaatggcct cggtcagcag gccaccctgg tcgaaaccaa cgtagccggg cggcgcaccg
     1981 atcaggcgcg agacggtgtg ccgctccatg tactccgaca tgtcgaagcg taccagttcg
     2041 atacccatgg ccttcgccag ctgacgcgcc acctcggtct tgccgacgcc ggtagggccg
     2101 gcgaagagga aggagccgac cggcttgtcc ggcgccttga ggccggcacg ggacagtttg
     2161 atggcggtgg acagcgagtc gatcgccgca tcctgaccga acacggtgag cttgagatcg
     2221 cgttccaggt tgcgcagcag ctccttgtcc gagctgctga cgtgcttcgg cggaatccgt
     2281 gcgatcttcg cgacgatgtc ctcgacctgc gccacctcga tg
//
LOCUS       DATIHC010000914         5597 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_38972, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000914 DATIHC010000000
VERSION     DATIHC010000914.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5597
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38972"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..246)
                     /locus_tag="VLF16_15175"
     CDS             complement(<1..246)
                     /locus_tag="VLF16_15175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate ABC transporter"
                     /protein_id="HSX72272.1"
                     /translation="MFKHTAMALACALSFGISSLAQAADPIVIKFSHVVADSTPKGQG
                     ALLFKKLAEERLAGKVKVDVYPNSSLFGDGKEMEALLL"
     gene            685..1836
                     /locus_tag="VLF16_15180"
     CDS             685..1836
                     /locus_tag="VLF16_15180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HSX72273.1"
                     /translation="MTARALRNWYLVHKWTSLISTVFLLMLCLTGLPLIFHEEIEHYF
                     EPHPELKALSADAPRIDYDKLIDEALAVRPGEVVRFVGFDPEEPLGFIFTAPTIQPPP
                     LDAYIQTFDTRTGELFPSEPPEDGFMHLMLRLHTDMFLGLPGYLFLGFMGLLLVVSLV
                     SGVVVYTPFMRKLDFATVRTARSKRLKWLDLHNVLGIVTLAWVLVVGATGVINTLAIP
                     ILGLWQNGQLAEMTAPYKDLPPLTELGSLHKAMETAQVAAPDMAPSFVAYPGTDFSSQ
                     HHYAVFMRGNTPLTSRLLKPALVDATTGELTDMREMPMYVKTLLVSQPLHFGDYGGLP
                     LKIIWALLDIVSIVILISGLYLWLARRKAPLEKRLAELNAGGLVAEGRA"
     gene            1833..2021
                     /locus_tag="VLF16_15185"
     CDS             1833..2021
                     /locus_tag="VLF16_15185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012076097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72274.1"
                     /translation="MRRGLWMIFRWPLLLALLSLFGLIAALVGDDIYDLLSWLTLGVP
                     LLLIGVVWVRLKATRQTR"
     gene            complement(2038..2433)
                     /locus_tag="VLF16_15190"
     CDS             complement(2038..2433)
                     /locus_tag="VLF16_15190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012312363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HSX72275.1"
                     /translation="MRPQLIAAAEIDRLETWSKYNKDMCTSCMSTCCTMPVEVRIVDL
                     IRIGVVDEFERGEPPKNIAKRLQKEGLVERFNQKSGIFTLTRMSNGDCMYLDRKTRLC
                     TVYDKRPDTCRNHPRVGPRPGYCAWRPKA"
     gene            complement(2710..3600)
                     /locus_tag="VLF16_15195"
     CDS             complement(2710..3600)
                     /locus_tag="VLF16_15195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HSX72276.1"
                     /translation="MDFRQLRYFVALYEEGHVGRAAERLSLSQPALSQQIRQLEQNLE
                     VALFQRSGKRLLPTLAAHTLYSHALPLLDGLERARDALRGFRGRAPRSLAIGVLQTVN
                     ASLVPHLLEKLRAAQPQLVVQIYELSGLDIERRLLSGSLDIGIGFLPPRQPGLHSLEL
                     YEDELQLVVPPEHALREFRKVSLAQAAEQPMLLLGEEFRVRQIWQEQLALLGRRPHVQ
                     AELNHMSGILDSLPHSAGLATVLPGRARQLHANQGLLWKPISEPRVPLKVGLVFRDAQ
                     RQQPTLDLLGKLLDEVVNGK"
     gene            3723..4421
                     /locus_tag="VLF16_15200"
     CDS             3723..4421
                     /locus_tag="VLF16_15200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HSX72277.1"
                     /translation="MIKAEVAGLFIGKAVDEGRGYVSALGKQPVNADIWLGPLGLEGD
                     EQGDSRHHGGPERALHLYPSEHYVHWRQRYPQREWSQPAFGENLSSHGLLESQVCIGD
                     IFRWGDALIQVSQPRSPCYRLAERWGLPGLALEMQNNGLCGWFFRVLQPGWVSAAQPL
                     ERVQCSPSGLSVAQAIRSYFQFPLERGGLQQLVACEALSERWRHGAARRLSSGQLEDW
                     RNRLEGPARPALSA"
     gene            4418..4654
                     /locus_tag="VLF16_15205"
     CDS             4418..4654
                     /locus_tag="VLF16_15205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003113233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72278.1"
                     /translation="MNEYVIQLHRDGCLWAEMTVTGARLDEVRGELQRRFPEAEGFTL
                     RVQQRKEQRRIVECGPEGIRLLGVQYQYLELDDA"
     gene            4647..>5597
                     /locus_tag="VLF16_15210"
     CDS             4647..>5597
                     /locus_tag="VLF16_15210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017938249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSX72279.1"
                     /translation="MRDDWSRDRLMNTVQRPEQLFVRGQGSWLWDAESRSYLDFTQGW
                     AVNSLGHSPVALVRALQRQAGQLINPGPAYYNRGMLELAARLCQATGSDQAYFLNSGA
                     EANEGAIKLARKWGQLHRGGAYRMVTAVNSFHGRTLGAMSASGKPAFQALYEPKVPGF
                     AKVPYNDLAALEAALGDDVVALMLEPVQGEAGVLPAELDYLQGAERLCRKRGILLILD
                     EVQTGIGRCGSLLAEELYGIRADVITLGKGLGGGVPLAALLARGNACCFAPGEQGGTY
                     HGNALMTAAGLAVLDVVLEPGLLEQVRATGQQMRDGLARVG"
BASE COUNT          883 a         1844 c         1918 g          952 t
ORIGIN      
        1 gagcagcagg gcctccattt ccttgccgtc gccgaacagc gaggagttcg ggtagacgtc
       61 gaccttcacc ttgccggcca gacgctcctc ggcgagcttc ttgaacagca gggcgccctg
      121 gcctttcggg gtgctgtcgg ccaccacgtg ggagaacttg atgacaatcg ggtcggcggc
      181 ctgggccagg ctggagatgc cgaaggagag ggcgcaggcg agcgccatag cggtgtgctt
      241 gaacatgctg gggtcctttt cttgtgtttg tcaggacggt tgtggcgtcc ggggaggcct
      301 tatcactcta gctcggcccg gacgaatggc ttgcgcagcg gcattcgcaa ttcggatgcc
      361 aactggcgac aaggcctctg cgccaggcgt gacgggggcc tggccagggt agagctcatt
      421 tctctggcgg aaattcgcca tttgtcgggt gtgggcgggc gagaatccgc cacgcatcta
      481 ttggagatgg cgaaaggctt gtagtcgaag cgtgtgagaa gtattctcaa acgcgtgtgc
      541 gaccgtctga cgttgcgcac gtccaccgtc gcatccgcga cgcatgcgcc aaggccgcag
      601 agcccgcgca gatctttccc gcgatcgttc aggccgcccg tgcgagcccg atgtcccggg
      661 gccgaatacc ctgacgagcc gaacatgacc gcccgagccc tgcgcaactg gtacctggtg
      721 cacaagtgga ccagcctgat ttccaccgtc ttcctgctga tgctgtgcct gaccggcctg
      781 ccgctgatct tccatgagga gatcgagcac tacttcgagc cgcatcccga gctcaaggcg
      841 ctcagcgccg acgcgccgcg catcgactac gacaagctga tcgacgaggc cctggcggtg
      901 cgcccgggcg aagtggtgcg cttcgtcggc ttcgacccgg aggagccgct gggcttcatc
      961 ttcaccgcgc cgaccattca gccgccgccg ctcgatgcct acatccagac cttcgatacg
     1021 cgcactggcg agctgtttcc ctcggagccg ccggaagacg gcttcatgca cctgatgctg
     1081 cgcctgcaca ccgacatgtt cctcggtctg cccggctacc tgttcctcgg cttcatgggg
     1141 ctgctattgg tggtctcgct ggtgtccggc gtggtggtct acacgccgtt catgcgcaag
     1201 ctggacttcg ccaccgtgcg taccgcgcgc agcaagcgcc tgaagtggct ggacctgcac
     1261 aacgtgctcg gcatcgtcac cctggcctgg gtgctggtgg tgggcgccac cggggtgatc
     1321 aacaccctgg cgatcccgat tctcggcctg tggcagaacg gccagctggc ggaaatgacc
     1381 gcgccctaca aggacctgcc gccgctgacc gagctgggct cactgcacaa ggccatggag
     1441 actgcgcagg tggctgcgcc ggacatggcg ccgagcttcg tcgcctaccc cggcaccgac
     1501 ttcagcagcc agcaccacta cgccgtgttc atgcgcggca acacgccgct gacctcgcgc
     1561 ctgctcaagc ccgcgctggt ggatgcgacg accggcgagc tgaccgacat gcgcgagatg
     1621 ccgatgtacg tgaagacgct gctggtgtcg cagccgctgc acttcggtga ctacggcggc
     1681 ctgccgctga agatcatctg ggcgctgctg gacatcgtct ccatcgtcat cctgatcagc
     1741 ggcctgtacc tctggctggc ccggcgcaag gcgccgctgg agaaacgcct ggccgaactg
     1801 aacgccggcg gcctggtagc ggagggcagg gcatgagacg cggactctgg atgatcttcc
     1861 gctggccgct gctgctggca ctgctgagcc tgttcggcct gatcgcggcg ctggtcggcg
     1921 acgatatcta cgacctgctg tcgtggctga cgctgggcgt accgctgctg ctgatcggcg
     1981 tggtgtgggt ccggctgaag gcgacgcggc agacgcgctg agctcggccg cgcccgctca
     2041 ggccttcggc cgccaggcgc agtagcccgg ccgcgggccg acgcgcgggt ggttgcggca
     2101 ggtgtccggg cgcttgtcgt agacggtgca gagacgggtc ttgcggtcca ggtacatgca
     2161 gtcgccgttg ctcatccggg tcagggtgaa gatgcccgat ttctgattga agcgctcgac
     2221 caggccttcc ttctgcagcc gcttggcgat gttcttcggc ggctcgccgc gctcgaactc
     2281 atccaccacg ccgatacgga tcaggtcgac gatgcgcacc tccaccggca tggtgcagca
     2341 cgtcgacatg cagctggtgc acatgtcctt gttgtacttg ctccaggttt ccaggcggtc
     2401 gatttccgcc gcggcgatca gttgcggtct catggttggc tcggtggggc gtggcaggcg
     2461 cgcgatgata gccgtcacac gcactttgtg aaccccttcc cgctcggcgg ctttgtaatc
     2521 tttggcttac aaagcgtacc ggcgaaggct gctatcagcg tgccatcagc cggattaatc
     2581 tcgctttcaa ggacttagcg caggaagcgc accgagaaaa cagggacatg agggattgtt
     2641 cgccaggatg gcgcacggat catggacgtc agggaacaag tctgcagaac cccgcgcaag
     2701 cggggttttt tatttcccgt tcaccacctc gtccagcaac ttgcccagca ggtccagcgt
     2761 cggctgctgg cgctgggcat cacggaacac taggccgacc ttcaatggca cccgcggctc
     2821 gctgatcggc ttccacagca ggccctggtt ggcgtgcagc tggcgggcac ggcccggcag
     2881 cacggtggcc aggccggccg agtgcggcag gctgtcgaga atgccgctca tgtgattgag
     2941 ctcggcctgt acgtgcgggc ggcggccgag cagcgccagc tgctcctgcc agatctgccg
     3001 cacgcggaat tcctcgccga gcagcagcat gggctgctcc gccgcctggg ccagcgacac
     3061 cttcctgaat tcgcgcaacg catgctccgg cggcaccacc agctgcagct cgtcctcgta
     3121 cagctccagg ctgtgcagcc cgggctggcg cggtggcagg aaaccgatgc cgatatccag
     3181 gctgccgctg agcaggcggc gctcgatatc caggccggac agttcgtaga tctgcaccac
     3241 cagctgcggt tgcgcggcgc gcagcttctc cagcagatgt ggcaccaggc tggcgttgac
     3301 cgtctgcagc acgccgatgg ccaggctgcg cggggcgcgg ccgcggaagc cgcgcagggc
     3361 atcgcgggcc cgctccaggc cgtcgagcag cggcagcgcg tggctgtaca gggtatgcgc
     3421 ggcgagggtc ggcagcagac gtttgccgct gcgctggaac agcgccacct cgaggttctg
     3481 ttccagctgg cgaatctgct gcgacagcgc cggctgcgac aggctcaggc gctcggcggc
     3541 gcggccgaca tggccctcct cgtacagagc gacgaagtac cgcaactggc gaaagtccat
     3601 gggctggtcc tcggctatcg ataacttcag cttatcaatg aagctgggaa atcgaaatgt
     3661 catccggccg ctgcgctcaa taagattgcc gcatcgagag ccgcgacagg gtggcggaga
     3721 acatgatcaa ggcagaggtg gcgggtttat tcataggaaa agccgtggat gaaggccgcg
     3781 gttacgtcag cgcgctgggc aagcagccgg tgaacgccga catctggctc ggcccgctcg
     3841 gcctggaagg cgacgagcag ggcgacagtc gccaccacgg cggccccgag cgcgcgttgc
     3901 acctctatcc gtcggagcac tatgtgcact ggcgccagcg ctacccgcaa cgcgagtggt
     3961 cgcagccggc cttcggcgag aacctgtcca gccatggcct gctggagagt caggtgtgca
     4021 tcggcgacat cttccgctgg ggcgacgcgc tgatccaggt cagccagccg cgttcgccct
     4081 gctaccgcct ggccgagcgc tgggggctgc cggggctggc gctggagatg cagaacaacg
     4141 gcctgtgcgg ctggttcttc cgcgtgctgc aaccgggctg ggtcagcgcc gcgcagccgc
     4201 tggagcgggt gcagtgcagc ccttccggcc tgagcgtggc ccaggccatc cgcagctatt
     4261 tccagttccc cctcgaacgc ggcggtctgc agcagctggt ggcctgcgag gcactgtccg
     4321 aacgctggcg ccatggcgcc gcacggcgcc tgtccagcgg ccagctggaa gactggcgca
     4381 accgtctgga gggcccggca cggccggcgc tgagcgcatg aacgagtatg tgatccagtt
     4441 gcaccgcgat ggctgcctgt gggccgagat gacggtcacc ggcgcccgcc tggacgaggt
     4501 gcgcggcgag ttgcagcggc gcttccccga ggccgagggc ttcaccctgc gcgtgcagca
     4561 gcgcaaggag cagcgacgca tcgtcgagtg cgggccggag ggcattcgcc tactcggtgt
     4621 gcagtaccag tatctggagc tcgacgatgc gtgacgactg gtcccgcgat cgcctgatga
     4681 acaccgtgca gcgcccggag cagctcttcg tgcgcggcca gggttcctgg ctgtgggatg
     4741 ccgagagccg ctcctacctg gacttcaccc agggctgggc ggtcaacagc ctgggccaca
     4801 gcccggtggc gctggtccgc gcgctgcagc gtcaggccgg ccagctgatc aaccccggtc
     4861 cggcctatta caaccgcggc atgctcgaac tggccgcgcg cctgtgccag gccaccggca
     4921 gcgaccaggc ctacttcctc aacagtggcg ccgaggccaa cgaaggcgcg atcaagctgg
     4981 cgcgcaagtg gggccagctg cacaggggtg gcgcctaccg catggtcacc gccgtcaaca
     5041 gcttccacgg ccgcaccctc ggcgccatgt ccgcctccgg caaaccggcc ttccaggcgc
     5101 tgtacgagcc caaggtaccg ggcttcgcca aggttcccta caacgacctg gcggccctcg
     5161 aggcggcgct cggcgacgac gtggtggcgc tgatgctcga gccggtgcag ggcgaggccg
     5221 gggtgctgcc cgccgagctg gactatctgc agggcgccga gcggctgtgc cgcaagcgcg
     5281 gcatcctgct gatcctcgac gaggtgcaga ccggcatcgg ccgctgcggc agcctgctgg
     5341 ccgaggagct gtacggcatc cgcgccgacg tgatcaccct gggcaagggc ctgggtggcg
     5401 gcgtaccgct ggcggccctg ctggcccgcg gcaacgcctg ctgcttcgcg cccggcgagc
     5461 agggcggcac ctatcacggc aacgcgctga tgacggccgc cggcctggcg gtgctggacg
     5521 tcgtgctgga gcccggcttg ctggagcagg tgcgcgccac cgggcagcag atgcgcgacg
     5581 ggctggcccg cgtcggc
//
LOCUS       DATIHC010000915         2204 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_25137, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000915 DATIHC010000000
VERSION     DATIHC010000915.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25137"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1638
                     /locus_tag="VLF16_15215"
     CDS             <1..1638
                     /locus_tag="VLF16_15215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015372394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX72280.1"
                     /translation="PSAHDKRLELVSLIYCDTPLALQGDPLRLKQVLTNLVSNAIKFT
                     REGTIAVRAMVEDESDERAQLRISVQDTGVGLSDDDLRALFQAFSQADNSLSRQAGGT
                     GLGLVISKRLIEQMGGEIGVESSPGSGSEFWISLTLPKARDDADDLPRAPLQGRRVAL
                     LESHEMVRQALHHQLQDCGLEVLEFASLDALLEQVARSREAGQPIELAVLGVNLQELP
                     PERLGKRLWDLDRLGCKPLVLCPTTEQALYHEALPDTQAQLQAKPACTRKLLRALGEL
                     VSPRPAKVEAPAPLTSRPPSLLCVDDNPANLLLVQTLLGDMGAEVVAVDSGYAAVEAV
                     QQHSFDLVFMDVQMPGMDGRQATEAIRQWEQERERSPLPIVALTAHALANEKRALLQG
                     GMDDYLTKPINERQLVQVVLKWTGLALRNHPQPSAAETPAISADLRVLDPEEGLRLAA
                     GKADLANDMLSMLLAGLPADRQAIRQAREANERSALIERVHRLHGATRYCGVPQLRAA
                     CQRSETLLKQDDPAAQVALDELDAAIARLAEEAAVSA"
     gene            1675..>2204
                     /locus_tag="VLF16_15220"
     CDS             1675..>2204
                     /locus_tag="VLF16_15220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HSX72281.1"
                     /translation="MRITLFSSKSYDRASFETQALPSGWQLQFQDSLLTLNTVALAEG
                     SEVVCAFINDDLSAPVLERLAAGGTRLIALRSAGYNHVDLPAAERLGLAVVRVPAYSP
                     HAVAEHAVALILALNRRIHRAFNRTREGDFSLHGLTGFDLHGKTVGVIGGGQIGLAFA
                     RIMAGFGCRLLIGDPYP"
BASE COUNT          350 a          827 c          738 g          289 t
ORIGIN      
        1 ccctccgccc acgacaagcg gctggagctg gtcagcctga tctactgcga caccccgctg
       61 gccctgcagg gcgatccgct gcgcctgaag caggtgctga ccaacctggt gagcaacgcc
      121 atcaagttca cccgcgaggg caccatcgcc gtgcgcgcca tggtcgagga cgagagcgac
      181 gaacgcgccc agctgcgcat cagcgtgcag gacaccggcg tgggcctctc cgacgatgac
      241 ctgcgcgcgc tgttccaggc cttcagccag gccgacaact cgctgagccg ccaggccggc
      301 ggtaccgggc tcggcctggt catctccaag cgtctgatcg agcagatggg cggcgagatc
      361 ggcgtggaga gcagccccgg cagcggctcg gaattctgga tcagcctgac cctgcccaag
      421 gctcgcgacg atgccgacga tctgccccgc gcgccgctgc agggccgccg cgtagccctg
      481 ctggagagcc acgagatggt ccgccaggcc ctgcatcacc agctgcagga ctgcggtctg
      541 gaggtgctgg aattcgccag cctcgatgcc ctgctcgaac aggtggcgcg aagccgcgag
      601 gccggccagc ccatcgagct ggcggtactc ggggtgaatc tgcaggagct gccgccggag
      661 cgactcggca aacgcctgtg ggacctcgac cgcctcggct gcaagcccct ggtgctctgc
      721 cccaccaccg agcaggcgct ctaccacgag gccctgccgg acacccaagc gcagctgcag
      781 gccaaaccgg cctgcacgcg caagctgctg cgcgccctcg gcgagctggt cagtccacgc
      841 ccggccaagg tcgaggcccc ggccccgctg accagccggc cgccaagcct gctctgcgtc
      901 gacgacaatc cggccaacct gctgctggtg caaaccctgc tcggcgacat gggcgccgag
      961 gtggtggcgg tggacagcgg ctacgccgcc gtcgaggcgg tgcagcagca cagcttcgac
     1021 ctcgtgttca tggacgtgca gatgcccggc atggacggtc gccaggccac cgaagcgatc
     1081 cgccagtggg agcaggagcg cgaacgcagc ccgctgccga tcgtcgccct caccgcccac
     1141 gccctggcca acgagaaacg cgccctgctg caaggcggca tggacgacta cctgaccaag
     1201 ccgatcaacg agcgccagct ggtccaggtg gtgctcaagt ggaccggcct ggcgctgcgc
     1261 aaccatccgc agccgtccgc cgccgagacg ccggccatca gcgccgacct gcgcgtactg
     1321 gaccccgagg aaggcctgcg cctggccgcc ggcaaggcgg acctggccaa cgacatgctc
     1381 agcatgctgc tggccggcct gcccgccgac cgccaggcca ttcgccaggc gcgtgaggcc
     1441 aacgagcgca gcgcgctgat cgagcgggtc caccgcctgc acggcgccac ccgctactgt
     1501 ggcgtgccgc agctgcgcgc cgcctgccag cgcagcgaga ccctgctcaa gcaggacgac
     1561 ccggcggccc aggtcgccct cgacgagctg gacgcggcca tcgcccgcct ggccgaggaa
     1621 gccgcggtca gcgcctgagc cagggcgacg cccggccggc ccaaggagaa tgccatgcgc
     1681 atcaccctgt tcagcagcaa gtcctacgac cgcgccagct tcgagacgca ggcgctgcca
     1741 tccggctggc agctgcagtt ccaggacagc ctgctgaccc tgaataccgt cgccctggcc
     1801 gagggcagcg aggtggtgtg cgcctttatc aacgacgatc tttccgcgcc ggtactggag
     1861 cgtctggccg ccggcggcac gcggctgatc gccctgcgct cggccggcta caaccacgtc
     1921 gacctgcccg ccgccgagcg cctggggctc gccgtggtgc gggtgccggc ctattcgccg
     1981 catgcggtgg ccgagcacgc cgtggcgctg atcctggcgc tgaaccggcg catccaccgc
     2041 gccttcaacc gcacccgcga gggcgacttc agcctgcacg gcctgaccgg cttcgacctg
     2101 cacggcaaga cggtcggcgt gatcggcggc gggcagatcg gcctggcgtt cgcccggatc
     2161 atggccggct tcggctgccg tctgctgatc ggcgatcctt accc
//
LOCUS       DATIHC010000916         2255 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_22747, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000916 DATIHC010000000
VERSION     DATIHC010000916.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2255)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2255)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2255
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22747"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2255)
                     /locus_tag="VLF16_15225"
     CDS             complement(<1..>2255)
                     /locus_tag="VLF16_15225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017738361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-2-macroglobulin family protein"
                     /protein_id="HSX72282.1"
                     /translation="ILNITEYKTPDPFAELFGRKAYGADQLDVYGQLIEAGQGRVATL
                     AFGGDAALAKGGKRPDTSVTIVALQSVPIELNAQGEGDVSLDIPDFNGELRLMAQAWT
                     DEQYGMAEGKTVVAAPLVAELSAPRFLAGGDETSVALDLTNLSGAAQKLEVQIEAEGQ
                     LSLAETPSGYTAPLQLDQAQRTTLRIPVRAAGGYGAGVIRVRVNGLSLPNEDLPAFSR
                     EWRIGVRSAWPAQHTRLRSVLQGDSWQLPAGTLAAFEPAGREALLSVSSRPPLNLAEQ
                     IQALKAYPYGCLEQTTSGLYPSLYADSATLEKLGLEGEPEEQRRRSIEIGIERLLGMQ
                     RYNGSFGLWGSDGEEEFWLTAYVTDFLLRAREQGFAVPPEALEKASERLLRYLQDRHL
                     IDAGYSDNLDHTRFAVQAYAGLVLSRSQQAPLGSLRALYDRRGDAKSGLPLVQLAVAL
                     QKMGDKPRADEALALGLGLGRQRREWLADYGSPLRDQALIYALLEENGLAAARRDELL
                     FSLAEERSVQEYLSTQERNALFLAGRGLIKTPEKNWSAILSSGDQTRELSNGQPAIKL
                     DGALLSEPLSLSSGFDDKLYQQLTISGYPTQAPQPRSNNLSIERGFYGLDGRPLDLNG
                     LASGQLVLVHLAVRAEERVPDALVVDLLPAGLELENQNLAQSAASLDDASSAVREWQK
                     SMQNAAIKHQEFRDDRFVAAVDINGYDTTHLLYLARAVTPGSYRVPPPQVESMYRPAW
                     NAVGATPARLV"
BASE COUNT          301 a          786 c          803 g          365 t
ORIGIN      
        1 ccaccaacct cgccggcgtc gcacccaccg cgttccacgc cgggcgatac atcgactcca
       61 cctgcggcgg cggcacgcgg tagctgccgg gggtgacggc gcgggccagg tacagcaggt
      121 gggtggtgtc gtagccgttg atatcgacgg cggcgacgaa gcggtcgtcg cgaaactcct
      181 ggtgcttgat cgcggcgttc tgcatcgact tctgccactc cctcaccgcg ctgctggcgt
      241 cgtccaggct ggcggcgctc tgcgccaagt tctggttctc cagctccagg ccggccggca
      301 gcaggtccac caccagggcg tccggcaccc gctcctccgc gcgcaccgcc aggtgcacca
      361 gtaccagctg gccgctggcc aggccgttca ggtccagcgg gcgtccgtcc aggccataga
      421 agccgcgctc gatactgagg ttgttgctgc gcggctgcgg cgcctgggtc gggtagccgg
      481 agatggtcag ctgctgatag agcttgtcgt cgaagccgct gctcaggctc agcggctcgc
      541 tcagcagggc accgtccagc ttgatcgccg gctggccgtt gctcagttcg cgggtctggt
      601 cgccgctgct gaggatggcg ctccagttct tctctggcgt cttgatcaga ccgcggccgg
      661 cgaggaacag agcgttgcgc tcctgggtcg acaggtattc ctgcacggag cgctcctcgg
      721 cgaggctgaa cagcagctca tcgcggcggg cggcggccag gccgttctcc tccagcagtg
      781 cgtagatcag cgcctggtcg cgcagcgggc tgccgtagtc ggccagccac tcgcgccgct
      841 gacggccgag ccccaggccg agggccaggg cctcgtcggc gcgcggcttg tcgcccatct
      901 tctgcagcgc cacggccagc tgcaccagcg gcagaccgga cttggcgtcg ccgcggcggt
      961 cgtacagcgc gcgcaggctg ccgagcggcg cctgctggct gcgcgacagc accaggccgg
     1021 cataggcctg cacggcgaag cgggtgtgat cgaggttgtc gctgtagccg gcgtcgatca
     1081 gatggcgatc ctgcaggtag cgcagcaggc gctcgctggc cttctccagc gcctccggcg
     1141 gcacggcgaa gccctgttcg cgtgcgcgca ggaggaagtc ggtgacatag gcggtcagcc
     1201 agaactcctc ctcgccgtcc gaaccccaca ggccgaagct gccgttatag cgctgcatgc
     1261 cgagcaggcg ttcgatgccg atctcgatgg agcggcgacg ctgctcctcc ggctcgcctt
     1321 ccaggccgag cttctcgagc gtggccgagt cggcatagag cgacgggtac aggccgctgg
     1381 tggtctgctc caggcagccg tagggatagg ccttcagcgc ctggatctgt tcggccaggt
     1441 tcagcggcgg acggctggaa acgctgagca gcgcctcgcg cccggccggc tcgaaggccg
     1501 ccagggtgcc ggccggcagt tgccagctgt cgccctgcag cacgctgcgc aggcgggtgt
     1561 gctgcgccgg ccaggccgag cgtacgccga tgcgccactc gcggctgaac gccggcaggt
     1621 cctcgttcgg caggctcaaa ccgttgaccc tgacgcggat aaccccggcc ccgtagccgc
     1681 cggcggcgcg caccggaatc cgcagggtgg tgcgctgggc ctgatcgagc tgcagcggcg
     1741 cggtgtagcc ggacggcgtc tcggccaggc tcagctggcc ctcggcctcg atctgcacct
     1801 cgagcttctg cgcggcgccg gacaggttgg tcaggtccag ggccacgctg gtctcgtcgc
     1861 cgccggcgag gaagcgcggc gccgacagct cggccaccag cggcgcggcg actaccgtct
     1921 tgccctcggc catgccgtat tgctcgtcgg tccaggcctg ggccatcagg cgcagctcgc
     1981 cgttgaagtc gggaatgtcg aggctgacgt cgccctcgcc ctgggcgttc aactcgatcg
     2041 gcacgctctg cagcgcgacg atggtgacgc tggtgtccgg acgcttgccg cccttggcca
     2101 gcgccgcgtc gccaccgaag gccagcgtcg ccacccggcc ctggcccgcc tcgatcagct
     2161 ggccgtagac gtcgagctgg tcggcgccgt aggccttgcg gccgaacagt tcggcgaacg
     2221 gatcgggcgt cttgtattcg gtgatgttga ggatg
//
LOCUS       DATIHC010000917         1753 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_25140, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000917 DATIHC010000000
VERSION     DATIHC010000917.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1753
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25140"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            105..1463
                     /locus_tag="VLF16_15230"
     CDS             105..1463
                     /locus_tag="VLF16_15230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017519746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1329 domain-containing protein"
                     /protein_id="HSX72283.1"
                     /translation="MRSTPLILTLLTSLICSAAQAAVSAEEAAKLGTTLTPVGAEKAG
                     NADGSIPAWTGGLAKDAGTVDSADFLSNPFEGEQPLFTITAQNAEQYREQLSPGQLAM
                     LKRYPQTYRLRVFPTHRSAALPEKVYQAIAHNAVNSSLVAGGNGLQNLQIGIPFPIPQ
                     NGLEVVWNHITRYRGGSARRSHVQATPLANGTFTPVHFKQQLSYRDKVKGFDPQKPGN
                     VLFYYKQTVTAPARLSGDVVLVHETLDQVKEPRMAWLYSAGQRRVRRAPQVAYDGPYP
                     ASEGQRVADNLDMFNGAPDRYDWKLVGKKEMYIPYNNYQLDSPELKYTDLVKPGHVNS
                     DLTRYEKHRVWVVQATLKAGQRHIYAKRELYVDEDTWQIALADHYDSRNTLWRTGEGY
                     QTYRYDQQLPWLSVEALYDLINGRYIVSGMRNEERGGLEFGFESLAAEYTPTALRNAG
                     VR"
     gene            1482..>1753
                     /locus_tag="VLF16_15235"
     CDS             1482..>1753
                     /locus_tag="VLF16_15235"
                     /inference="COORDINATES: protein motif:HMM:NF018561.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1254 domain-containing protein"
                     /protein_id="HSX72284.1"
                     /translation="MPLSKTQRWSLGIGAGVLVAAGLAAYSVIQQARETAQAYLFGYP
                     LVMMEVTKQHQMLIGTSAMNRFNHAKRYPDPGFNGVVSPNIDTLYS"
BASE COUNT          351 a          618 c          522 g          262 t
ORIGIN      
        1 agcctgtcgt acaccaacta cttcggcggc gattacaacg tgaacgcaga ccgcgatttc
       61 gtggcgctga gtttcggcgt gtcattctga gcggagacat aacaatgaga agcacacccc
      121 tgatccttac cctgctcacc agcctgatct gcagcgcggc ccaggccgcc gtcagcgccg
      181 aggaagcggc caagctgggc accacactga cgccggtcgg tgccgagaaa gctggcaatg
      241 ccgacggctc gattcccgcc tggaccggcg gcctggcgaa ggatgccggc acggtcgatt
      301 cggcggactt cctcagcaac ccgttcgaag gcgagcagcc gctgttcacc atcaccgcgc
      361 agaatgccga gcagtaccgc gagcagctga gccccgggca actggcgatg ctcaagcgtt
      421 acccgcaaac ctatcgcctg cgcgtgttcc ccacccaccg cagcgcggcg ttgcccgaaa
      481 aggtctacca ggccatcgcc cataacgccg tgaattccag cctggtcgcc ggcggcaacg
      541 gcctgcagaa cctgcagatc ggcattccct tcccgatccc acagaacggc ctggaggtgg
      601 tgtggaacca catcacccgc tatcgcggcg gcagcgcccg gcgcagccat gtgcaggcca
      661 cgccgctggc caacggcacc ttcaccccgg tgcacttcaa gcagcagctc agttaccgcg
      721 acaaggtcaa gggcttcgac ccgcagaagc cgggcaatgt actgttctac tacaagcaga
      781 cggtcaccgc gccggcgcgc ctttccggcg atgtggtgct ggttcacgag accctggacc
      841 aggtcaagga gccgcgcatg gcctggctct acagcgctgg tcagcgccgc gtgcgccgcg
      901 cgccgcaggt cgcctacgac ggcccttacc cggcctccga gggccagcgc gtggcggaca
      961 atctggatat gttcaacggc gcaccggatc gctacgactg gaagctggtc ggcaagaagg
     1021 agatgtacat cccctacaac aattaccagc tcgactcgcc ggagctgaag tacaccgacc
     1081 tggtcaagcc ggggcacgtc aactccgacc tgacccgcta cgagaagcac cgcgtctggg
     1141 tggtgcaggc cacgctcaag gcaggccagc gccacatcta cgccaagcgc gagctgtacg
     1201 tcgacgagga cacctggcag atcgccctgg ccgatcacta cgactcgcgc aacaccctgt
     1261 ggcgcaccgg cgagggctac cagacctacc gctacgacca gcagctgccg tggctgagcg
     1321 tggaggcgct gtacgacctg atcaacggcc gctacatcgt ctccggcatg cgcaacgaag
     1381 agcgcggcgg cctggagttc ggcttcgagt ccctcgcggc cgaatacacc cccaccgcgc
     1441 tgcgcaatgc cggcgtccgc tgaaatcgag gagtaagcga catgcctctc agcaagacac
     1501 agcgctggag cctgggcatc ggagccggcg tgctggtcgc cgccggcctt gccgcctaca
     1561 gcgtcatcca gcaggcccgg gaaaccgccc aggcctacct gttcggctat ccgctggtga
     1621 tgatggaagt caccaagcag caccagatgc tgatcggcac cagtgccatg aaccgcttca
     1681 accacgccaa gcgctacccc gaccccggct tcaatggcgt ggtgtcgccg aacatcgaca
     1741 ccctctacag cat
//
LOCUS       DATIHC010000918         1788 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27577, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000918 DATIHC010000000
VERSION     DATIHC010000918.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1788)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1788)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1788
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27577"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            53..889
                     /locus_tag="VLF16_15240"
     CDS             53..889
                     /locus_tag="VLF16_15240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020798742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HSX72285.1"
                     /translation="MSEDRSSNEQKSWFNKLTQAFAHEPRNRQELLEVLREAHQNKLL
                     DSEALTIVEGAIQVADLQVRDIMVPRSQMISIKASQSPAEFLPAIVDSAHSRYPVIGE
                     SLDEVIGILLAKDLLPLIINGDKPFDIKQLLRPATFVPESKRLNVLLREFRANHNHMA
                     VVIDEYGGVAGLVTIEDVLEQIVGDIEDEHDVEEDSYIKPLPSGDFLIKALTPIENFN
                     EAFDTEFPDSEFDTVGGLGMNAFGHLPKRNEVTEIGEFRFRVLNADSRRVHLLRLTPL
                     ER"
     gene            1136..>1788
                     /locus_tag="VLF16_15245"
     CDS             1136..>1788
                     /locus_tag="VLF16_15245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003376581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HSX72286.1"
                     /translation="MRWITQPGWPGHLLALAGGASTTLALAPFDIWPLALVAIALFYL
                     GLRELSPRQALLRGWLYGLGLFLAGTSWIYVSIHDYGAASPALAGFLTFGFCAGVALF
                     FALPAWLWARWLRRNDSPITDALAFAALWLAQEAFRGWFLTGFPWLYAGYSQLHGPLA
                     GLAPVGGMWLISLTLALSAALLVNLPRLFADKPRLAAGVLLLLAPWLAGLALKDHAWT
                     "
BASE COUNT          293 a          683 c          525 g          287 t
ORIGIN      
        1 cccgtacgcc gccgacgaag aataaccgcc agagaaggca ccgagactca ccatgagcga
       61 agaccgatcg agcaacgagc agaagtcctg gttcaacaag ctgacccagg cttttgctca
      121 tgagccgaga aaccgccagg aactgctgga agtcctgcgc gaagcccacc agaacaagct
      181 gctcgacagc gaggccctga ccatcgtcga gggcgccatc caggtcgccg acctgcaggt
      241 gcgcgacatc atggtgccgc gctcgcagat gatcagcatc aaggccagcc agagcccagc
      301 cgaattcctg cccgccatcg tcgactccgc gcactcgcgc tacccagtga tcggcgagag
      361 cctcgacgag gtcatcggca tcctcctggc caaggacctg ctgccgctga tcatcaatgg
      421 cgacaagccg ttcgacatca agcaactgct gcgcccggcc accttcgtgc cggagtccaa
      481 gcgcctcaac gtgctgctgc gcgagttccg cgccaaccac aaccacatgg cggtggtcat
      541 cgacgagtac ggcggcgtgg ccggcctggt gaccatcgag gacgtgctgg agcagatcgt
      601 cggcgacatc gaggacgagc acgatgtcga ggaagacagc tacatcaagc cgctgccctc
      661 cggcgacttc ctgatcaagg cgctgacgcc gatcgagaac ttcaacgaag ccttcgacac
      721 cgaattcccc gacagcgagt tcgacaccgt cggcggcctg gggatgaacg ccttcggcca
      781 cctgcccaag cgcaacgaag tgaccgagat cggcgagttc cgcttccgcg tgctcaacgc
      841 cgacagccgt cgcgtgcatc tgctgcgcct gacgccgctg gagcgttaag cccggtccat
      901 cgcaaccaag gccgtggcat cagccttggt tgcgatccat acccgcacag cgcatctcgt
      961 agcccggact tccgggaaac gggccgccac gccccggact gaagtccggg ctacgttctc
     1021 gccaacggcc caccgggggc gcgagctgcc caccccgccc tccagacagc tcgacttcca
     1081 gcctccccgc ccttccagta cccttgcccg cctgattccc gatcaaggac gcacgatgcg
     1141 ctggatcacc caacccggct ggccgggcca tctgctggcc ctggccggcg gcgcctccac
     1201 caccctggcc ctggcaccct tcgacatctg gccgctggcc ctggtcgcca tcgccctctt
     1261 ctacctcggc ctgcgtgagc tgagcccgcg ccaggccctg ctgcgcggct ggctctatgg
     1321 cctcggcctg ttcctcgccg gcaccagctg gatctacgtc agcatccacg actacggcgc
     1381 cgcctcgccc gcgctggccg gctttctcac cttcggcttc tgcgccgggg tcgcgctgtt
     1441 cttcgccctg ccggcctggc tctgggcgcg ctggctgcgc cgcaacgact caccgatcac
     1501 cgacgccctg gccttcgccg ccctgtggct ggcccaagag gctttccgcg gttggttcct
     1561 caccggcttc ccctggctct acgccggcta cagccaactg catggcccgc tggccggcct
     1621 ggcgccggtc ggcggcatgt ggctgatctc gctgacgctg gcgctgtccg ccgccctgct
     1681 ggtcaacctg ccgcgcctgt tcgccgacaa gccgcgcctc gccgccggcg tgctcctgct
     1741 gctggcgccc tggctcgccg gcctggcact gaaggaccac gcctggac
//
LOCUS       DATIHC010000919         2808 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_25141, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000919 DATIHC010000000
VERSION     DATIHC010000919.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2808
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25141"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..757
                     /locus_tag="VLF16_15250"
     CDS             <1..757
                     /locus_tag="VLF16_15250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003244020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HSX72287.1"
                     /translation="VTFAAGMACEGLKPVVAIYSTFLQRAYDQLIHDVAVQHLDVLFA
                     IDRAGLVGEDGPTHAGSFDISYLRCIPGMLIATPSDENELRLLLTTGYHFPGPAAVRY
                     PRGSGPNAVIEPALEGVEIGKAVVRRQGKGVALLAFGVQLSEALRVGETLDATVVDMR
                     FVKPLDEALLRELAGSHDLLVTLEENAVMGGAGSAVSEFLAAENLLKPLLHLGLPDYY
                     VEHAKPAQMLAECGLDQSGIEAAIRQRLALLNA"
     gene            846..>2808
                     /locus_tag="VLF16_15255"
     CDS             846..>2808
                     /locus_tag="VLF16_15255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013792854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSX72288.1"
                     /translation="MPLLSHRMAFRGRERRWLPWLGRNGKVALGWSWLLNRGQAAQIE
                     KTFAGLAQSRVDLLVGWARQHWQALELIGDGLGQAWPSLSNDALEQARAHMPEISELF
                     VVAGDGRVLASSHGPRAGQRHDPDAVAAGMRAPFLRGPYVDELTLQLGATTSQFHDAV
                     TLMFHQPLRHAGQVVGCLCARIPNDVLSDLIQREAGHVYRDSGDNYLFMVQSAYDPSI
                     APGTALSRSRFEDATFSGGDNLKQGIRTPFGTIRVQKHTEFELRFTAPATGELHPGVR
                     ETIRHGSNLFVLYPGYPDYRHVPVIGAGLTLRLPGSPDTWGMMCEGDLEEVYRRRGFS
                     YSLSRQLLLGLCALGGLQIALDAQLPQQAAALTFAAAGLLLGAFWAFSLRPRARKLQA
                     LSDFFLETAECGAPLSNRLGVADFGRDEAGALAGWINSFVDKMDHTMQGIVAAGNALR
                     RTSDALGHTSANASQCAAQGQAAAVSTARAMLEVNHSIGHATEHILDSESASRQALQM
                     SREGSEAVRQNAEDVGQLAARIEQSSQALQALNRQTEEIQHVTESIHAIADQTNLLAL
                     NAAIEAARAGDSGRGFAVVADEVRGLAQRTAQSTQQIAGTLESVRQQTLQAMAAMQSC
                     QEAAQRGVARSHEANAALQRIQGEVEAMQD"
BASE COUNT          454 a         1020 c          922 g          412 t
ORIGIN      
        1 ggtgaccttt gccgccggca tggcctgcga aggtcttaaa cccgtagtgg cgatctactc
       61 caccttcctg cagcgcgcct acgaccaact gatccacgac gtggccgtgc agcacctcga
      121 cgtgctgttc gccatcgacc gcgccggcct ggtcggtgag gacggcccga cccacgcggg
      181 cagcttcgac atctcctacc tgcgctgcat ccccggcatg ctgatcgcca cgcccagcga
      241 cgaaaacgag ctgcgcctgc tgctgaccac cggctaccac ttcccgggcc cggcggccgt
      301 gcgctacccg cgcggcagcg gccccaacgc ggtcatcgag ccggcgctgg aaggcgtgga
      361 gatcggcaag gcggtggtgc gccgccaggg caagggcgtc gcgctgctgg ccttcggcgt
      421 acagctgagc gaggccctca gggtcggcga gacgctggac gccacggtgg tggacatgcg
      481 cttcgtcaaa cccctcgacg aagccctgct gcgcgagctg gccggcagcc acgatctgct
      541 ggtgaccctc gaggaaaacg cggtgatggg cggcgcgggc agcgcggtca gcgaattcct
      601 cgccgcggag aacctgctca agccgctgct gcacctcggc ttgcccgact actacgtgga
      661 gcacgccaag ccggcgcaga tgctcgccga gtgcggcctg gaccagagcg ggatcgaggc
      721 cgccatccgc cagcgcctcg ctctgctgaa cgcctgaccc cctcgcctcg caccggcctg
      781 cttcttgcac tgttgtcccg gataacaaca aggaacgggg ccgtccgcga cggcaggagt
      841 catgtatgcc gttgctcagt catcgaatgg ccttcagggg tcgcgagcgc cgctggctgc
      901 cctggctggg gcgcaacggc aaggtggcgc tgggctggtc ctggctgctc aaccgcggcc
      961 aggcggctca aatcgagaaa accttcgccg gcctcgcgca gagccgtgtc gacctgctgg
     1021 tgggctgggc gcgccagcac tggcaggctc tggagctgat cggcgacggc ctcggccagg
     1081 cctggccgag cctgtcgaac gatgcactgg agcaggcgag agcgcacatg ccggagattt
     1141 ccgagctgtt cgtggtggcc ggcgatggcc gcgtgctcgc ctccagccat gggccacggg
     1201 caggccagcg ccacgatccg gacgccgtcg ccgccggcat gcgggcgccc ttcctgcgtg
     1261 gcccttacgt cgatgagctg accctgcaac tcggcgccac cacctcccag ttccacgatg
     1321 ccgtgacgct tatgttccac cagccgctgc gccacgccgg ccaggtggtc ggctgcctgt
     1381 gcgcgcgcat tcccaacgac gtgctcagcg acctgatcca gcgcgaggcc ggccacgtct
     1441 accgtgattc cggtgacaac tacctgttca tggtgcagag cgcctacgac ccgagcatcg
     1501 cccccggcac cgcgctgtca cgctcgcgct tcgaggacgc caccttcagt ggcggcgaca
     1561 acctgaaaca gggcattcgc actccgttcg gcaccattcg cgtgcagaaa cacaccgagt
     1621 tcgaactgcg cttcaccgcc ccggccaccg gcgaactgca ccccggcgtg cgcgagacca
     1681 tccgccacgg cagcaacctg ttcgtgcttt atccgggata ccccgactac cgccatgtac
     1741 cggtgatcgg tgccggtctg accctgcgtc tacccggctc gccggacacc tggggcatga
     1801 tgtgcgaggg cgacctggag gaagtctatc gccggcgcgg cttcagctac tcgctgagcc
     1861 gccaattgct gctcggtctg tgtgccctcg gcggcttgca gatagccctc gacgctcagc
     1921 tgccacagca ggcggccgcc ctcaccttcg ccgccgccgg cctgctgctg ggcgccttct
     1981 gggccttcag cctgcgcccg cgggcgcgca agctgcaggc gctgtcggac ttcttcctgg
     2041 agacggccga atgcggcgcg ccgctgagca accgcctcgg tgtggcagac ttcggccgcg
     2101 acgaggccgg cgcgctggca ggctggatca acagtttcgt cgacaagatg gaccacacca
     2161 tgcagggcat tgtcgccgcc ggcaatgccc tgcggcgcac ctccgacgcc ctcggccaca
     2221 cttcggccaa cgcatcccag tgcgcggccc agggccaggc tgcggcggtg tccaccgcgc
     2281 gggctatgct ggaggtgaac cacagcatcg gccacgccac cgaacacatc ctcgatagcg
     2341 aaagcgcctc gcgccaagcc ctgcagatga gccgcgaggg gagcgaggcg gtgcgccaga
     2401 acgccgagga tgtgggccaa ctggccgcgc gcatcgaaca gtcgagccag gccctgcagg
     2461 cgcttaaccg gcagacggag gaaatccagc acgtcaccga gtcgatccac gccatcgccg
     2521 accagaccaa cctgctggcg ctcaacgccg ccatcgaggc cgcgcgcgcc ggtgacagcg
     2581 gccgcggctt cgctgtggtc gccgacgagg tacgcggcct ggcgcaacgt acggcccagt
     2641 cgacccagca aatcgccggc accctcgaaa gcgtgcgcca gcagacgctg caggccatgg
     2701 cggcaatgca gtcctgccag gaggcggcgc agcgcggcgt cgcacgctcc cacgaggcga
     2761 acgctgcgct gcaacgcatt cagggcgagg tcgaggccat gcaggacc
//
LOCUS       DATIHC010000920         2033 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_15894, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000920 DATIHC010000000
VERSION     DATIHC010000920.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2033)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2033)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2033
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15894"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..387)
                     /locus_tag="VLF16_15260"
     CDS             complement(<1..387)
                     /locus_tag="VLF16_15260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011058740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HisA/HisF-related TIM barrel protein"
                     /protein_id="HSX72289.1"
                     /translation="MALAKRIIPCLDVDNGRVVKGVQFENIRDAGDPVEIARRYDEQG
                     ADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVS
                     INTAAVKNPDFVREASEKFGNQCIVVA"
     gene            complement(460..1203)
                     /gene="hisA"
                     /locus_tag="VLF16_15265"
     CDS             complement(460..1203)
                     /gene="hisA"
                     /locus_tag="VLF16_15265"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020308795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HSX72290.1"
                     /translation="MLIIPAIDLKDGACVRLRQGRMEDSTVFSDDPVSMAAKWVEGGC
                     RRLHLVDLNGAFEGQPVNGEVVTAIAKRYPNLPIQIGGGIRTLETIEHYVRAGVSYVI
                     IGTKAVKEPQFVTEACKAFPGKVIVGLDAKDGFVATDGWAEVSTVQATDLAKRFEADG
                     VSAIVYTDIAKDGMMQGCNIPATVALANASRIPVIASGGIHNIGDIQALLDTNNPGII
                     GAITGRAIYEGTLDVAEAQAICDLKHKVE"
     gene            complement(1240..1497)
                     /locus_tag="VLF16_15270"
     CDS             complement(1240..1497)
                     /locus_tag="VLF16_15270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003282883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2164 domain-containing protein"
                     /protein_id="HSX72291.1"
                     /translation="MSRGKKVAQLELDAARQQAALQVLKNFLEERFELELGSFEVQEV
                     LDLISRDIAPHYYNKAISDVQAVLSDRFASLESDLWALEKS"
     gene            complement(1498..>2033)
                     /gene="hisH"
                     /locus_tag="VLF16_15275"
     CDS             complement(1498..>2033)
                     /gene="hisH"
                     /locus_tag="VLF16_15275"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HSX72292.1"
                     /translation="AVIREADRVVFPGVGAIRDCMAEIKRLGFDALVREVSQDRPFLG
                     ICVGMQALLERSEENGGVDCIGLFPGQVRFFGKDLQEDGEHLKVPHMGWNEVEQNVDH
                     PLWHEIPDRGRFYFVHSYYIEAGNPAQVVGRGHYGRDFAAALAEGSRFAVQFHPEKSH
                     THGLQLLQNFVSWDGRR"
BASE COUNT          315 a          649 c          692 g          377 t
ORIGIN      
        1 ggcgacgacg atgcattgat tgccgaattt ttcggaagct tcgcgcacga aatccgggtt
       61 cttcaccgcg gcggtgttga tcgagacctt gtcggcgccg gcgttgagca ggttgcggat
      121 gtcctgcacg gtacgcacgc cgccacccac ggtgagcgga atgaacacct ggctggccat
      181 gcgctccacc gtgtgcaggg tggtgtcgcg gccgtcgacg ctggcggtga tgtcgaggaa
      241 ggtgatctcg tcagcgccct gctcgtcgta gcggcgggcg atttccaccg ggtcgccggc
      301 gtcgcggatg ttctcgaact ggacgccctt gaccacgcgg ccgttgtcca cgtcgaggca
      361 ggggatgatg cgtttggcca gtgccatggc ggcttctctc gcagggtgcg ccgtgcgcac
      421 cggtaacgtc agcggtgcgc gcggcgcacc cggttcaact cactcgacct tgtgtttcag
      481 gtcgcagatg gcctgggcct cggccacatc gagggtgccc tcgtagatcg cgcgaccggt
      541 gatggcgccg atgatgccgg ggttgttggt gtccagcagg gcctggatgt cgccgatgtt
      601 gtggatgccg ccggaggcga tcaccgggat gcggctggcg ttggccaggg ccacggtcgc
      661 cgggatgttg cagccctgca tcatgccgtc cttggcgatg tcggtataaa cgatggcgga
      721 tacgccgtcg gcctcgaaac gcttggccag gtcggtggcc tgcacggtgg acacctcggc
      781 ccagccgtcg gtggcgacga agccgtcctt ggcatccagg ccgacgatga ccttgcccgg
      841 aaaggccttg caggcctcgg tgacgaattg cggctctttc accgccttgg tgccgatgat
      901 cacgtagctg acgccggcgc gcacgtagtg ctcgatggtt tccaaggtgc ggatgccgcc
      961 gccgatctgg atcggcaggt tcgggtagcg cttggcgatg gcggtgacca cctcaccgtt
     1021 gaccggctgg ccctcgaagg cgccgttcag gtcgaccagg tgcagacggc ggcagccgcc
     1081 ctcgacccac ttggcggcca tgctcaccgg gtcatcggaa aacaccgtgg agtcttccat
     1141 gcggccctgg cgcagacgta cgcaggcgcc gtccttcaga tcgatagcgg ggataatcag
     1201 catcggttga acctgctcaa gtcgttaatt cggtacgggt cagctcttct cgagcgccca
     1261 caggtcgctc tccaggctgg cgaagcggtc ggacagcacc gcctgcacat cggagatcgc
     1321 cttgttgtag tagtgcgggg caatgtcgcg gctgatcagg tcgagcactt cctgcacctc
     1381 gaacgagccc agctcgagtt cgaagcgctc ttccagaaag ttcttcagca cctgcaacgc
     1441 ggcctgctgc cgggcggcat cgagctccag ctgcgcgacc ttcttgcccc ggctcattta
     1501 ccggcggccg tcccaggaga cgaagttctg cagcagctgc aggccgtggg tatggctctt
     1561 ctccgggtgg aactgcacgg cgaagcgcga gccctcggcc agcgcggcgg cgaagtccct
     1621 gccgtagtgg ccgcgaccga ccacctgggc cgggttgccg gcctcgatgt agtagctgtg
     1681 cacgaagtag aagcggccgc ggtccgggat ctcgtgccag agcggatggt cgacgttctg
     1741 ctcgacctcg ttccagccca tgtgcggcac tttcaggtgc tcgccgtctt cctgcaggtc
     1801 cttgccgaag aagcgcacct gaccggggaa caggccgatg cagtcgacgc cgccattctc
     1861 ctcgctgcgc tccagcaggg cctgcatgcc gacgcagatg ccgaggaacg gacggtcctg
     1921 gctgacctcg cgcaccagag cgtcgaagcc caggcgcttg atctcggcca tgcagtcgcg
     1981 gatcgcgccg acaccgggga acaccacgcg atcggcctcg cggatcacgg cgg
//
LOCUS       DATIHC010000921         1588 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_25172, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000921 DATIHC010000000
VERSION     DATIHC010000921.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25172"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..197
                     /locus_tag="VLF16_15280"
     CDS             <1..197
                     /locus_tag="VLF16_15280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011920528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1329 domain-containing protein"
                     /protein_id="HSX72293.1"
                     /translation="SEGHGVFFYDQQAPQYSAETHYDVLSGRYAVGALFNEQKNAYDF
                     DVQYSRKQFTPSALRAAGIR"
     gene            330..1241
                     /locus_tag="VLF16_15285"
     CDS             330..1241
                     /locus_tag="VLF16_15285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HSX72294.1"
                     /translation="MKLHQLRAMLAISESGSIQEASRLLHISQPALSKGIKELEAELG
                     VPLLVRSNRGITVTEFGERLVRRARLILEEVRRAREEIETLKGVMDGKLSIGVSPVTP
                     GAQFIASLSRYRKRYPKVQVQIHELRPSKLMEGLREGQLDLVLTSLPEARSADGFHWT
                     ELYEQPAALAVRKGHPLRNARSLRELLGEEWLLQDSLEQSKVGMMFVDHGIEYPQNVT
                     ECASVVLFTELALHTDAVSYWSLRLLERVQTLGQELEVLDIAERVPPMNISLVCRDQE
                     LMTREAKALADELVYAYTSPHAPKVSD"
     gene            complement(1246..>1588)
                     /locus_tag="VLF16_15290"
     CDS             complement(1246..>1588)
                     /locus_tag="VLF16_15290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72295.1"
                     /translation="RHLARLAAQRQGESICQFTRAFAWRRVDTGVIRAVYASLHGHLG
                     GQLPIRADDRLKQDLWLDEEDLDLDLLAEMARLSGRSLERTADNPWFDRVTTVRDLVA
                     FLEHQPRLAPA"
BASE COUNT          262 a          569 c          517 g          240 t
ORIGIN      
        1 tctccgaggg ccacggcgtg ttcttctacg accagcaggc cccgcagtac agcgccgaga
       61 cccactacga cgtgctctcc ggtcgctacg ccgtcggcgc gctgttcaat gagcagaaga
      121 acgcctacga cttcgacgtg cagtacagcc gcaagcagtt cacccccagc gccctgcgcg
      181 cggcgggcat ccgctgaggt tcacccgaca ctccaccctg ggcggcctgc gggccgccgt
      241 tttttatccg ccgttacagt gccggcggcc cgttgccggc gcttttgttt tacattccag
      301 gccccgatca ccgatccccg gcgttgccca tgaagttgca tcaactccgc gccatgctcg
      361 ccatcagcga gagcggcagc atccaggagg cgtcgcgcct gctgcacatc tcccagccgg
      421 ccctgtccaa gggcatcaag gagctggaag cggaactggg cgtgccgctg ctggtgcgct
      481 ccaaccgcgg catcacggtg accgagttcg gcgagcgcct ggtgcgccgc gcccgcctga
      541 tcctcgagga ggtgcgccgc gcccgcgagg agatcgagac cctcaagggc gtgatggacg
      601 gcaagctgtc gatcggcgta tcgccggtca cccccggcgc ccagttcatc gccagcctca
      661 gccgctaccg caagcgctac cccaaggtgc aggtgcagat ccacgagctg cgcccgtcca
      721 agctgatgga gggcctgcgc gaaggccagc tggacctggt gctgacctcg ctgccggagg
      781 cacgcagcgc cgacggcttc cactggaccg agctgtacga gcagcccgcc gcgctggccg
      841 tgcgcaaggg ccacccgctg cgcaacgccc gctcgctgcg cgagctgctc ggcgaggaat
      901 ggctgctgca ggactccctg gagcagtcca aggtcggcat gatgtttgtc gaccacggca
      961 tcgaataccc gcagaacgtc accgaatgcg cctcggtggt gctgttcacc gagctggcgc
     1021 tgcacaccga cgcggtcagc tactggtcgc tgcgcctgct cgaacgggta cagaccctgg
     1081 gccaggagct ggaagtgctc gacatcgcgg agcgggtgcc gccgatgaac atctccctgg
     1141 tctgccgcga ccaggagctg atgacccgcg aggccaaggc cctggccgac gagctggtat
     1201 acgcctacac cagcccgcac gcgcccaagg tgagcgacta ggcgctcagg ccggcgccag
     1261 acgcggctgg tgctcgagga acgccaccag gtcgcgcacg gtggtcaccc ggtcgaacca
     1321 gggattgtcc gcggtccgct ccagcgagcg gccgctgagc cgggccattt ccgcgagcag
     1381 gtcgaggtcc agatcttcct cgtccagcca caggtcctgc ttcagtcggt catcggcgcg
     1441 gatcggcagc tgcccgccca gatggccgtg cagcgacgcg tacacggcac gaatcactcc
     1501 ggtatccacc cgccgccacg cgaaggcgcg ggtgaactgg cagatggatt cgccctggcg
     1561 ctgtgcggcc agccgcgcca gatgacgg
//
LOCUS       DATIHC010000922         2197 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18206, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000922 DATIHC010000000
VERSION     DATIHC010000922.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2197
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18206"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1250
                     /locus_tag="VLF16_15295"
     CDS             <1..1250
                     /locus_tag="VLF16_15295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72296.1"
                     /translation="SLASGCQLLELDRQLRTAQQTRILIPGQLYAEAPRQALVALFAD
                     QHLQAYRSVQPGGAFYFSVAAGDYQLLAFEDRNDNLRLDPDEPRHWLPAPASVPFEVQ
                     PTAERRAALGRLNRLNPASPDATPLPELDLSLERLYRDLPKARHNYLQVVSLDDPRFS
                     DRRTQQGAWRPLDFLSEVGYGLYLLEPWDADREPIFLLHGINSSPTVWREQLAALDRE
                     RYQPVLFHYPSGMPLNNSAYLLSEAMRDVQLRLKPARMHLFAHSMGGLVARRSVQLLE
                     PGGGSDHLCLFLTLATPWGGHPSAATGVSRIPLEVPVWRDMAPGSPFLRTLFAAPLPA
                     HLRQWLLVSYAGNSRMIAEPNDGTVPLASELTPAAQDEAERLFLLPEDHTGIMRSARS
                     RVLLQRALAGLPDQGCRPASSAM"
     gene            1617..>2197
                     /locus_tag="VLF16_15300"
     CDS             1617..>2197
                     /locus_tag="VLF16_15300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009394352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OprD family outer membrane porin"
                     /protein_id="HSX72297.1"
                     /translation="MKARYTPISAALLAAGLSTLPNLSQAAGFVEDAKVNLNLRNYYI
                     NRNFVDESPQNYAEEWTQNFILDARSGYTEGTVGFGVDALGMLSIKLDGGRGTAGTQL
                     IPVHDDGRPADEWGRLAVAGKARFSKTELKVGEWMPVLPILRADDGRSLPQTFQGGQI
                     TSQEIAGLTLYGGQFRQNSPRNDGSLEDMSYGGG"
BASE COUNT          356 a          833 c          680 g          328 t
ORIGIN      
        1 cctcgctggc gagcggctgc cagctgctgg aactggaccg gcagctgcgc accgcgcagc
       61 agacccgcat tctcatcccc ggccagctgt acgcggaggc gccgcgtcag gcgctggtcg
      121 ccctgttcgc cgaccagcac ctgcaggcct accgcagcgt gcagcccggc ggggccttct
      181 acttcagcgt ggccgccggc gactaccagt tgctggcttt cgaggatcgc aacgacaacc
      241 tgcgtctcga ccccgatgag ccacgccatt ggctgccggc ccccgccagc gtgcccttcg
      301 aggtgcagcc gaccgccgag cgccgcgcgg cgctgggccg gctcaaccga ctgaatcccg
      361 cctcgcccga tgcgacgccc ctgcccgagc tggacctgag cctggagcgg ctctaccggg
      421 acctgccgaa ggcgcggcac aactacctgc aggtggtcag cctcgacgac ccgcgcttct
      481 ccgaccggcg cacgcaacag ggcgcctggc ggccgctgga ttttctcagc gaggtcggct
      541 acggcctcta cctgctggag ccctgggacg cggaccgaga accgatcttc ctgctgcacg
      601 gcatcaacag ctcgccgacc gtgtggcgcg aacagctcgc cgcactcgac cgcgagcgct
      661 accagccggt gctgttccac taccccagcg gcatgccgct gaacaacagc gcctacctgc
      721 tgagcgaggc gatgcgcgac gtgcagctgc gcctgaagcc cgcgcggatg cacctgttcg
      781 cccacagcat gggcgggctg gtggcgcgcc gcagcgtgca gctgctcgag ccgggcggcg
      841 gcagcgatca cctgtgcctg ttcctgaccc tggccacgcc ctggggcggc cacccgtccg
      901 ccgccaccgg cgtgtcgcgg ataccgctgg aggtgccggt gtggcgcgac atggcgcctg
      961 gcagcccgtt cctgcgtacg ctgttcgccg cgccgctgcc cgcgcacctg cggcaatggc
     1021 tgctggtcag ctatgcgggc aacagccgga tgatcgccga gcccaacgac ggcaccgtac
     1081 cgctggccag cgagctgacc ccggcggccc aggacgaggc cgagcgcctg ttcctgttgc
     1141 ccgaagacca caccggcatc atgcgcagcg cacgcagccg ggtgctcctg cagcgcgcac
     1201 tcgccggcct gcccgaccag ggttgccgcc ccgcttcgtc ggccatgtga tcgtacgacc
     1261 tcagcgaatc acgccatttc gcctctacga caaaagtcgc catagcgctt gattgacaag
     1321 ccaggcgggg gttgtcgata atccagctag gttgtacgac aacatataac aacaagagcg
     1381 cttcggcatg ctcacgaccg ccaccttcat cgcctatcgg cacctgcgcc cggccgcctc
     1441 gcgtcaggcc agccatctat cgcctcatcg ctcgcccacc ggattcgtcg accactagtc
     1501 gataaccgcc ggcgcgctgc cctgcgccgg tttccaccgt caccgcctcc acatgcgcgc
     1561 cgttcggcct gcagggggtc ggccgttccg ttgaaaaccc aaggagcaca acaacaatga
     1621 aagctcgcta caccccgatc tccgccgcgc tgctggccgc cggcctgtcc accctgccga
     1681 acctctccca ggccgccggt ttcgtcgagg atgccaaggt caacctgaac ctgcgcaact
     1741 actacatcaa ccgcaacttc gtcgacgagt cgccgcagaa ctacgccgag gaatggaccc
     1801 agaacttcat cctcgacgcc cgctccggct acaccgaagg cacggtcggc ttcggcgtcg
     1861 acgccctcgg catgctgtcg atcaagctcg acggtggtcg cggcaccgcc ggcacccagc
     1921 tgatcccggt gcacgacgac ggtcgcccgg cggacgaatg gggtcgcctg gccgtggccg
     1981 gcaaggcgcg cttctccaag accgagctta aggtcggcga gtggatgccg gtgctgccga
     2041 tcctccgcgc cgacgacggc cgctcgctgc cgcagacctt ccagggcggc cagatcacct
     2101 cccaggagat cgccggcctg accctgtacg gcggccagtt ccgtcagaac agcccgcgta
     2161 acgatggcag cctggaagac atgagctacg gcggcgg
//
LOCUS       DATIHC010000923         1523 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27607, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000923 DATIHC010000000
VERSION     DATIHC010000923.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27607"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..606)
                     /locus_tag="VLF16_15305"
     CDS             complement(<1..606)
                     /locus_tag="VLF16_15305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004423660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSX72298.1"
                     /translation="MSSISRFSGLLLAAALPFTAQAELPAERIEPSINAELAAHTKVF
                     AQKLYKVADNVYSAVGWQLGNVAMIEAPEGLIIVDTGESVSESRKIMAEFRKVSDKPV
                     KAVVYTHFHPDHINGVQAFVSREQVEKGEVQIYAHETLLANVVAQGALVGPILGVRSA
                     YSFGSFLEPADEKDMNGGIGPIVTPEPSTFIAPTITFRDRLD"
     gene            700..>1523
                     /locus_tag="VLF16_15310"
     CDS             700..>1523
                     /locus_tag="VLF16_15310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015503457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX72299.1"
                     /translation="MNDLRQLRHFVALAEHGHFARAAEAVHLSQPALSRSIQALESGL
                     GCRLLDRHPRGISLTAHGELVLEHARRLLAGSRALSNAVSQLGNLASGELRLGAGPYP
                     AARLVPHAMGAFAERHPRVRLQLSIDNWQQLRTRLLNDEIELFVADIRELSGDPLLDV
                     EPLRSHAGKLFCHPRHPLLQRVPLRMADLLEYPLAATQLPEEVMAALGADFQPSIQCD
                     NFMVLKELVSTSLVISLAPWDVIAQDVASGRLAPLPLQPGAVQHSAYGIVSRAGHSL"
BASE COUNT          238 a          528 c          508 g          249 t
ORIGIN      
        1 gtccaggcgg tccctgaagg tgatggtggg ggcgatgaag gtcgacggct cgggggtgac
       61 gatggggccg atgccgccgt tcatgtcctt ctcgtcggcc ggctcgagga aggagccgaa
      121 gctgtaggcc gagcgcacgc cgaggatcgg cccgaccagc gcaccctggg ccacgacgtt
      181 ggccagcagg gtctcgtggg cgtagatctg cacctcgccc ttttccacct gctcgcggct
      241 gacgaaggcc tgcacgccgt tgatgtggtc cgggtggaag tgggtgtaga ccaccgcctt
      301 gaccggcttg tcgctgacct tgcggaactc ggccatgatc ttgcgcgact cgctgaccga
      361 ctcgccggtg tcgacgatga tcagcccctc cggcgcctcg atcatcgcca cgttgcccag
      421 ctgccagccc accgccgagt agacgttgtc ggcgaccttg tagagcttct gggcgaagac
      481 cttggtgtgg gcggccagct cggcgttgat cgagggctcg atgcgttcgg cgggcagctc
      541 ggcctgagcg gtgaacggca gggcggcggc cagcagcagg ccgctgaagc gactgatgga
      601 agacatggca ggactcttgt tcttgatgtg ctggcaggtt gacaaaagag gattgatact
      661 tccaatgcat ttcaatcctc acaacgatgc agcacacgca tgaacgatct ccgccagctc
      721 cgccatttcg tcgccctcgc cgagcacggc cacttcgccc gtgcagccga ggccgtgcac
      781 ctcagccagc cggcgctcag ccgcagcatc caggcgctgg agagcggcct gggctgccgg
      841 ctgctggacc gccatccacg cggcatcagc ctcaccgccc acggcgaact ggtgctggaa
      901 catgcccggc gcctgctcgc cggcagccgc gcactgagca atgcggtcag ccaactcggc
      961 aacctggcca gcggcgaact gcgcctgggc gccggtccct accccgccgc gcgcctggta
     1021 ccgcacgcca tgggcgcctt cgccgaacgc cacccgcggg tgcgcctgca gctgtccatc
     1081 gacaactggc agcagctgcg cacgcgcctg ttgaacgacg agatcgagct gttcgtggcc
     1141 gacatccgcg aactcagtgg cgacccgctg ctggacgtgg agccgctgcg cagccatgcc
     1201 ggcaagctgt tctgccaccc gcggcatccg ctgctgcagc gcgtgccgct gcgcatggcc
     1261 gacctgctgg aatatccgct ggccgccacc cagctgcccg aggaggtgat ggcggcgctc
     1321 ggcgcggact ttcaaccgag catccagtgc gacaacttca tggtgctcaa ggagctggtc
     1381 tccaccagcc tggtgatcag cctggcgccg tgggacgtga tcgcccagga cgtggcctca
     1441 gggcgcctgg cgccgctgcc gctgcagccg ggcgccgtcc agcattccgc ctacggcatc
     1501 gtcagccgcg ccgggcacag cct
//
LOCUS       DATIHC010000924         5431 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_25178, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000924 DATIHC010000000
VERSION     DATIHC010000924.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5431)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5431)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5431
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25178"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(71..2701)
                     /gene="nahK"
                     /locus_tag="VLF16_15315"
     CDS             complement(71..2701)
                     /gene="nahK"
                     /locus_tag="VLF16_15315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003119141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hybrid sensor histidine kinase/response
                     regulator NahK/ErcS'"
                     /protein_id="HSX72300.1"
                     /translation="MACTSTRPSPASPLAVPAPDCAELRARVAELEGQNARLRRINAA
                     LIERVESGHSLRSDGYAAFQHSVILAEQVRERTDALNQAMTELKSSNQLLRDARQRAE
                     TAHQHLIDAIESISDAFVLFDREQRIVLFNSRFREFWTRTRARIGSGTRLSEIKRLAA
                     STGLIVEEQRGRGEGHTIYRLMNGRWVQVSERPTREGGLVILYTDITELKQSETQRRE
                     QALAQKSRLLQRAVDNLSQGVAMVNVEGSLELWNHRFLELCGLAPIEAHRPFAEVMAE
                     SELRLLTPDSRDEHGAPLHACEQRLFDGRMLEVRTHPLPAGGFVNTFTDITERFRQAQ
                     RLGESERWVRLITDQVPAMIAYLNAELVYEFTNKVYEEWYHWPREGMLGQSLRDVHSE
                     EHWRRLETYVERALCGESVTFEMAETSFGGQQRYLLRSYVPNRLASGEVVGLFVLVRD
                     VTEQRRTAEALHQAYQNLELRVRERTAELTAVNSQLRREIDERSQAEARLREAKREAE
                     LANLSKTKFLAAVSHDLLQPLNAARLFTSALLEKTPAGEGGLIRSVSNSLEDVEHLLG
                     TLVDISKLDAGVIRPDLSSFAVADLLDNLAAEFRQQAGGESLELRYRPSSAWVRSDIQ
                     LLARILRNLLTNAIRYTERGRILLGCRRRGNVLSIEVWDSGVGIAEDKLGEIFQEFKR
                     GDSQRPHQDRGLGLGLAIVDKIARMLGHRLRVASQPGRGSLFAVEVPLTRRRSVLRAP
                     AQPLSMEVERLRGARVWVLDNDAAICAGMRTLLEGWGCQVVTALSEDDLARQVDNYHA
                     EADVLIADYHLDDDRDGVQAVTAINARRAEPLPALMVTANYSNELKQNLRELGHTLLH
                     KPVKPMKLKTTLSHLLQRRE"
     gene            complement(2634..3794)
                     /gene="nosP"
                     /locus_tag="VLF16_15320"
     CDS             complement(2634..3794)
                     /gene="nosP"
                     /locus_tag="VLF16_15320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009622985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035991 - nitric oxide sensor activity
                     [Evidence IEA];
                     GO_process: GO:0046209 - nitric oxide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide-sensing protein NosP"
                     /protein_id="HSX72301.1"
                     /translation="MRRGETEDVVTAVSHAQDGEAVAQDLARQLMHPHLGFVLFFCSA
                     EYDLAELGAALHEYFGGIRVVGCTTAGEITPQGYGQRCVSAIGFDHRSFSIASVLIDQ
                     MERFNLIDAQQLVEQLVGECRGNALAPIKDHCFALTLLDGLSSREEVVLAALSAALGH
                     IPHFGGSAGDDNHLTCTHVYHDGEFHSGAAVVLLFNTRLEFEVFTTHHVEPRAEKLVV
                     TAADSASRRVLELNAAPAAEEYARLIGVTSKELDMRLFAAHPLAVRINDQYYVRSIQQ
                     VNADGSLTFYCAVETGIVLTAMAPGPLLPNLRQQFERLQARLGAPLLTIGCDCVLRRL
                     EVSDGSSMAEVSDYLRAQRVIGFNTYGEQFNGMHINQTFTGVAIGRPGAGLR"
     gene            complement(4131..5309)
                     /locus_tag="VLF16_15325"
     CDS             complement(4131..5309)
                     /locus_tag="VLF16_15325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HSX72302.1"
                     /translation="MNNNKTRRFLPLALGAAVALGVTQQAAAEIVLYDKDDTTFSTDG
                     YINAFYVNSDVDREGEQFDRRQSRVKMGFLPNWIGFNFGKQMDDLKLGGRSSFWVTIN
                     DSETNGTDTAIDVRQFYGTVANPEWGEVLVGKDFGLFSRSNIFLDELLAGYGNVSDTL
                     GLVDGNGVSFGNIGTGYPYPFPTSQITYRNDHLAEGLRFAVGIMDPVDTNDDSAVGKA
                     YQEQPRYESEISYQFGLGGSTIYTWLNGAYQTSENTDDSVDEVTSKGLGYGVQAKLGG
                     LSLTASGFQAQGINPFFTNNLGEPTLRDIDSDGYLLQGSYTFGKNRFALSYGKTEDDG
                     NGLGVAADYETRGIAYFRTVNDNLKLVAEYNQYEIDAAEGSGLNEDTDTFAVGAVLSW
                     "
BASE COUNT          804 a         1807 c         1897 g          923 t
ORIGIN      
        1 ccctacgatc ccgaaagccg tagggtgcgc cgtgcgcacc gggccgatcc cgccgccgca
       61 ccgaggccaa tcactcccgc cgctgcagca gatggctcag ggtggtcttc agcttcatcg
      121 gcttgaccgg cttgtgcagc agcgtgtggc cgagttcgcg caggttctgc ttgagctcgt
      181 tgctgtagtt ggcggtgacc atcagcgccg gcagcggttc ggcgcggcgg gcgttgatgg
      241 cggtgaccgc ctgcacgccg tcgcggtcgt cgtccaggtg gtagtcggcg atcagcacat
      301 cggcctcggc gtgataattg tccacctgtc gcgccaggtc gtcctcggac agcgcggtga
      361 ccacctggca gccccagccc tccagcagcg tgcgcatgcc ggcgcagatc gccgcgtcgt
      421 tatccagcac ccagacgcgt gcaccacgca gtcgctccac ttccatcgac aacggttgcg
      481 ccggcgcgcg cagcacgctg cggcggcggg tcagcggcac ctcgacggcg aacagcgagc
      541 cgcgccccgg ctgcgaggcc acgcgcaggc gatggccgag catgcgcgcg atcttgtcga
      601 cgatggctag gcccagaccg agcccgcggt cctggtgtgg acgctggctg tcgccgcgct
      661 tgaactcctg gaagatctcg ccgagcttgt cctcggcaat gcccacgcca ctgtcccaga
      721 cctcgatgga cagcacgttg ccgcggcgcc ggcagccgag caggatgcgc ccgcgctcgg
      781 tgtagcggat ggcattggtc agcaggttgc gcaggatgcg cgcgagcagc tggatgtcgc
      841 tgcgcaccca ggccgagctg ggccggtagc gcaactccag cgactcgccg cccgcctgct
      901 ggcggaactc ggcggcgagg ttgtcgagca ggtcggcgac ggcgaagctg gataggtccg
      961 ggcggatcac tccggcgtcc agcttggaaa tgtcgaccag ggtgccgagc aggtgctcca
     1021 cgtcctccag cgaattgctg acgctgcgga tcagcccgcc ctcgcccgcc ggagtcttct
     1081 ccagcagcgc gctggtgaac agccgcgcgg cgttgagcgg ctgcagcagg tcgtggctga
     1141 cggcggcgag aaacttggtc ttcgacaggt tggccagctc ggcctcgcgc ttggcctcgc
     1201 gcaggcgcgc ctcggcctgg ctgcgctcgt cgatctcgcg gcgcagctgg ctgttcaccg
     1261 cggtcagctc ggcggtgcgc tcgcgcaccc gcagctccag gttctgatag gcctggtgca
     1321 gcgcctcggc ggtacggcgc tgttcggtga cgtcgcgcac cagcacgaag aggccgacca
     1381 cctcgccact cgccagccgg ttcggcacgt aggaacgtag caggtagcgc tgctggccgc
     1441 cgaagctggt ctcggccatc tcgaaggtca cgctctcgcc acacagcgcg cgctcgacat
     1501 aggtctccag gcgtcgccag tgttcctcgc tgtgcacgtc gcgcaggctc tggccgagca
     1561 tgccttcgcg cggccagtgg taccactcct cgtagacctt gttggtgaac tcgtagacca
     1621 gctcggcgtt gaggtaggcg atcatcgccg gcacctggtc ggtgatcagg cgcacccagc
     1681 gctcgctctc gccgagccgc tgggcctggc gaaagcgttc ggtgatgtcg gtgaaggtgt
     1741 tgacgaagcc gccggccggc agcggatggg tgcgcacttc cagcatgcgt ccgtcgaaca
     1801 ggcgctgttc gcaggcgtgc agcggcgcgc cgtgctcgtc gcggctgtcc ggcgtgagca
     1861 ggcgcagctc actctcggcc atcacctcgg cgaagggccg gtgcgcctcg atcggcgcca
     1921 ggccgcagag ctcgaggaag cggtggttcc acagctccag gctgccttcg acgttgacca
     1981 tcgccacgcc ctgggacagg ttgtccaccg cccgctgcag cagccgcgac ttctgcgcca
     2041 gggcctgctc gcgacgctgg gtctcgctct gcttgagctc ggtgatgtcg gtgtagagga
     2101 tcaccagacc gccctcgcgg gtcggccgct cgctgacctg cacccagcgc ccgttcatca
     2161 gccggtagat ggtgtggccc tcgccgcggc cgcgctgctc ctcgacgatc agcccggtgc
     2221 tggccgccag gcgcttgatc tccgacagcc gcgtaccgct gccgatgcgc gcgcgggtac
     2281 gcgtccaaaa ctcgcggaag cggctgttga acagcacgat gcgctgctcc cggtcgaaca
     2341 gcacgaaggc gtcggagatg ctctcgatgg cgtcgatcag gtgctgatgc gcggtctcgg
     2401 cgcgttggcg ggcgtcacgc agcagctggt tgctggactt cagctcggtc atcgcctggt
     2461 tcagcgcgtc ggtgcgctcg cgcacctgtt cggccaggat caccgagtgc tggaacgcgg
     2521 cgtagccgtc cgagcgcagc gaatggccgg actcgacccg ctcgatcagc gccgcgttga
     2581 tcctgcgtag ccgcgcgttc tgcccctcca gctcggcgac gcgggcgcgc agctcagcgc
     2641 agtccggcgc cgggacggcc aatggcgacg ccggtgaagg tctggttgat gtgcatgcca
     2701 ttgaactgct ccccgtaggt gttgaagccg atcacccgct gcgcgcgcag gtagtcggag
     2761 acctcggcca tgctgctgcc gtcggacact tcaaggcggc gcagcacgca gtcgcagccg
     2821 atggtcagca gcggcgcacc gaggcgtgcc tgcaggcgct cgaactgctg gcgcaggttg
     2881 ggcagcaacg ggccgggcgc catggcggtg aggacgatgc cggtctccac cgcgcagtag
     2941 aaggtcaggc tgccgtcggc gttgacctgc tggatggagc gcacgtagta ctggtcgttg
     3001 atccgcaccg ccagcggatg ggcggcgaac aggcgcatgt ccagctcctt cgatgtcaca
     3061 ccgatcagcc gagcatactc ctcggccgcc ggcgcggcat tgagttccag cacccgccgc
     3121 gacgcggagt cggcggcggt caccaccagc ttctcggccc gcggctcgac gtggtgggtg
     3181 gtgaacacct cgaactccag ccgcgtgttg aacagcagga ccaccgccgc gccgctgtgg
     3241 aactcgccgt cgtggtagac gtgggtgcag gtgaggtggt tgtcgtcgcc cgccgagccg
     3301 ccgaaatgcg gaatgtggcc gagtgcggcg ctgagcgcgg cgagcaccac ctcctcgcgg
     3361 ctggacaggc cgtcgagcag ggtcagcgcg aagcagtggt ccttgatcgg cgccagggcg
     3421 ttgccgcggc attcgccgac cagttgctcg accagttgct gggcgtcgat caggttgaag
     3481 cgctccatct ggtcgatcag cacgctggcg atggagaagc tgcggtggtc gaagccgatg
     3541 gcgctgacgc agcgctggcc gtagccctgc ggggtgatct cgccggccgt ggtgcagccg
     3601 accacgcgga tgccgccgaa atactcgtgc agcgccgcac ccagctcggc caggtcgtac
     3661 tcggcggagc agaagaacag cacgaagccc aggtgcgggt gcatcagctg gcgggccagg
     3721 tcctgggcca cggcctcgcc gtcctgggca tgggacacgg ccgtgactac gtcttcagtt
     3781 tctccacgcc gcatcggcct accccatcga acccgttgcc gtcgcggcca ttctaggcag
     3841 cgctccgcgc cggccccatg ctacttgggt cgcgaagcca ctcgttccaa agtaggggtc
     3901 ccgcaccgcg tgggttgcca gcgcggggcg tacatcaaac gagacaccgt catgaccgta
     3961 gggtgcgccg tgcgcaccag acgatgcccc gcgcctaccg gatcggtgcg cgcggcgcac
     4021 cctaccctca cgtgccgcac cgtgccccac gccgccggac cggtgcgcaa tacgaaaaag
     4081 ggagggccga agccctcccg aaagggagcg tcacgcatgc gcggttgccg tcaccagctg
     4141 agcaccgcac ccacggcgaa ggtgtcggtg tcctcgttca ggccgctgcc ttcggcggcg
     4201 tcgatctcgt actggttgta ctcggccacc agcttgaggt tgtcgttgac ggtacggaaa
     4261 taggcgatgc cgcgggtctc gtagtcggcg gccacgccca ggccgttgcc gtcgtcctcg
     4321 gtcttgccgt aggacagggc gaagcggttc ttgccgaagg tgtaggagcc ctgcagcaga
     4381 tagccgtcgc tgtcgatgtc gcgcagggtc ggctcgccca ggttgttggt gaagaacgga
     4441 ttgatgccct gggcctggaa gccggaggcg gtcagcgaca ggccgcccag cttggcctgc
     4501 acgccgtagc cgaggccctt ggaggtcacc tcgtcgacgc tgtcgtcggt gttttccgag
     4561 gtctggtagg cgccattgag ccaggtgtag atggtcgagc cgcccaggcc gaactggtag
     4621 ctgatctccg actcgtagcg cggctgctcc tggtaggcct tgcccacggc gctgtcgtcg
     4681 ttggtgtcga ccgggtccat gatgccgacc gcgaagcgca ggccctcggc caggtggtcg
     4741 ttgcggtagg tgatctgcga ggtcgggaac gggtacggat agccggtgcc gatgttgccg
     4801 aaggacacgc cgttgccgtc caccaggccg agggtgtcgc tgacgttgcc gtagccggcc
     4861 agcagttcgt cgaggaagat gttggaacgc gagaacaggc cgaagtcctt gcccaccagc
     4921 acctctcccc actccgggtt ggccacggtg ccgtagaact ggcgcacgtc gatggcggtg
     4981 tcggtgccgt tggtctcgct gtcgttgatg gtcacccaga acgaggagcg cccgcccagc
     5041 ttcaggtcgt ccatctgctt gccgaagttg aagccgatcc agttcggcag aaagcccatc
     5101 ttcacccgcg actggcgccg gtcgaactgc tcgccctcgc ggtccacatc gctgttgacg
     5161 taaaaggcgt tgatgtagcc gtcggtggaa aaggtggtgt cgtccttgtc gtacagcacg
     5221 atctcggcgg cggcctgctg ggtcacgccc agggcgacgg cggcgcccag cgccaggggc
     5281 aggaatcgac gggtcttgtt gttgttcatc tcgctctcca ctgtgaggga cgactgtcgc
     5341 agtcgtggcg gaggcgatta tcgaaagcgg ccggcggcgc ccacaggctg ccttggcagc
     5401 ggtttcccgg tgctttggcg gggtgcaagg g
//
LOCUS       DATIHC010000925         1935 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_15925, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000925 DATIHC010000000
VERSION     DATIHC010000925.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1935)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1935)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1935
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15925"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1342)
                     /gene="fliD"
                     /locus_tag="VLF16_15330"
     CDS             complement(<1..1342)
                     /gene="fliD"
                     /locus_tag="VLF16_15330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003247088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HSX72303.1"
                     /translation="MAGITGTGLGSGMKIDEIVTALVNAEKAPKAAQLDRLEKAAEAK
                     ISSLGSLKSALNDFQTALKDLNDLKLFNTRTATSSDTARVTAKAGENALAGKYSIEVL
                     SLAKSSKIASGSVSGTSAATFATGGKLTIGQGSDSYSIDVADGASLKDVRDAINTQLK
                     DKGISANIVTDPVDNSSQLVLSSSKTGAGNDLTLAVDDAGSDLQALVTGMPAALSTSE
                     NAKFKIDGLEVQSASNEVSDVIEGVTFNLLTAEEGKTATLTVGDNTGAVKTNLQKFVD
                     SYNKLISTTTSLTSVVAVEGSEPLTGNLVGDATVRSLLSGIRSELVTPGAGDFRALSD
                     LGITTDKTGKLVIDSDKLDKVLAEDYDKVGEFLTGDKGLLSRLNETVDGYSKSGGILE
                     MRISAQQDMRKDVKDQREALDLRIAKVQDRLYAQYNAMDALVGQLRSTSDSIAST"
     gene            complement(1415..1792)
                     /locus_tag="VLF16_15335"
     CDS             complement(1415..1792)
                     /locus_tag="VLF16_15335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012076714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlaG"
                     /protein_id="HSX72304.1"
                     /translation="MDINSIKDWAKPIQTTAQTSAASASKVGTASAPNSLAGSDQEQQ
                     AGTAASASRQDIETAVGNIQEFVQSVKRNLSFSLDESTERVVVKVTDAVSGEVIRQIP
                     SEEALKLAESLSEARSLLFTAQV"
BASE COUNT          335 a          593 c          592 g          415 t
ORIGIN      
        1 gcgtggacgc gatcgaatcg ctggtcgagc gcaactggcc gaccagggcg tccatcgcgt
       61 tgtactgggc gtagagacgg tcctgcacct tggcgattcg caggtccaga gcctcacgct
      121 gatccttcac gtccttgcgc atgtcctgct gtgcggaaat gcgcatctcg agaatgccgc
      181 cgctcttcga gtagccgtcg acggtctcgt tcaggcggct gagcagcccc ttgtcgccgg
      241 tcaggaactc gccgaccttg tcataatcct cggccagcac cttgtcgagc ttgtcgctgt
      301 cgataaccag cttaccggtc ttgtcggtgg tgatgcccaa gtcgctcagc gcgcggaagt
      361 cgccggcacc cggggtcacc agctcgctgc gaatgccgct gagcaggctg cgcacggtag
      421 cgtcacccac cagattcccg gtgagcggct cggaaccttc caccgcaact acgctggtca
      481 gcgaagtggt ggtggagatc agcttgttgt acgagtcgac gaacttttgc aggttggtct
      541 tcaccgcacc ggtgttgtcg ccgacggtca gcgtggcggt cttgccctct tctgccgtga
      601 gcagattgaa ggtcacgcct tcgatgacgt cgctgacctc gttggaggcg ctctgcacct
      661 ccagcccgtc gatcttgaac ttggcgttct ccgaggtgct gagggcggcc ggcatgccgg
      721 tcaccagcgc ctgcagatca ctgcccgcat cgtccaccgc cagggtgagg tcgttgccgg
      781 cgccggtttt ggacgaagac agcaccagct gcgagctatt gtccaccggg tcggtgacga
      841 tattcgcgct gatgcccttg tccttgagct gggtgttgat ggcatcgcgc acatccttca
      901 gcgaggcgcc gtcggcgaca tcgatgctgt aggagtcact gccctggcca atggtcagct
      961 tgccgccagt ggcgaaggtg gcagccgacg tgccactcac cgagccggaa gcgatcttgc
     1021 tggacttggc cagcgagagg acctcgatcg agtacttacc cgccagggcg ttctcaccgg
     1081 ccttcgccgt gacgcgcgcg gtgtccgacg aggtggcggt gcgggtattg aacagcttga
     1141 ggtcgttcag atccttgagc gcggtctgaa agtcgttcaa ggcgctcttc agcgacccca
     1201 gcgacgaaat cttcgcctcg gcggcctttt ccagacggtc gagctgtgcg gccttcggcg
     1261 ccttttcggc gttcacgagt gcggtgacga tctcatcgat cttcatcccc gaacccagac
     1321 cagtgccagt gatacctgcc atttcgttaa cctcgtcaga aagtcgacgt ttctcgcttc
     1381 atggaagaac gctcttcaag aagcgtgccg gcagctaaac ctgagccgtg aacagcagac
     1441 tgcgtgcttc ggaaagactc tcggccagct tgagcgcttc ctccgaaggg atctggcgga
     1501 tcacctcccc ggaaacggcg tcagttactt tgaccacaac acgctcggta ctttcatcca
     1561 gggagaagct gagattgcgc ttcaccgact gaacgaactc ctggatgtta ccgacggcgg
     1621 tctcgatgtc ttggcgagaa gcggaagcag ccgtgccagc ctgctgttcc tgatcgctcc
     1681 ccgctaggga attgggagcg gaggctgtcc ccaccttgct tgcagatgcg gcggacgttt
     1741 gggcggtagt ctgaatcggc ttcgcccagt ctttgatcga gttgatgtcc ataaagcctc
     1801 ctcaacgagg aaatgggggg aaagtctcct ttccccccat tcgttcaccc ggaccttgtt
     1861 atcccagcag gctgagtaca gcctgcggaa gctggttggc ctgggccagg atcgaagtac
     1921 cggcctgttg cagaa
//
LOCUS       DATIHC010000926         1758 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2055, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000926 DATIHC010000000
VERSION     DATIHC010000926.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1758
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2055"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..472
                     /locus_tag="VLF16_15340"
     CDS             <1..472
                     /locus_tag="VLF16_15340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HSX72305.1"
                     /translation="EYLAKHPEKRGQDLATTRRACARYRGNPVSVFNFLEGTRLTPQK
                     HAQQNSPFKYLLKPKAGGIAFVLDAMGEQLDAIVNVTIHYPNGNPGFWDLLSGNLDEV
                     VVRFDKLAVPGEFIGRNYDQDEEYRLRFQQWVNALWEAKDAQLERLHQQFPGRG"
     gene            complement(525..>1758)
                     /locus_tag="VLF16_15345"
     CDS             complement(525..>1758)
                     /locus_tag="VLF16_15345"
                     /EC_number="2.7.7.65"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007161867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA];
                     GO_function: GO:0071111 - cyclic-guanylate-specific
                     phosphodiesterase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional diguanylate
                     cyclase/phosphodiesterase"
                     /protein_id="HSX72306.1"
                     /translation="RMAVLYLDLDGFKRINDSLGHDAGDEILRKVGEQLKHCLRPYDI
                     VARMGGDEFTALLDTLDHPEDAARVAEKLIETISVRHKVDGIDFTLGASIGISVYPEC
                     GNTVDRLLRSADMAMYEAKRAGRQQYRFFSPEMNGRARSRLMLEESLRNAIEQDDFVL
                     VYQPQIDLASGRLRGFEALLRWEHRVAGTITPGVFIPLLEETRLINRLGDWIFNQGVR
                     QCRAWQAQFGDQLLLSLNVSPVQFGMPQLVDELRRVLESHGLNPSQLELEVTEGALMQ
                     DLDATREQLRQLRALGVRIAIDDFGTGHSSLAYLRHFDLDTLKIDRLFVANMLDSPKD
                     AAIVSTIIDLGHHLGLEVIAEGVETLEQRDWLIAHRCTAMQGFLVAPGLPVARAAAFP
                     PRLEWSTWQPDEPPQVIG"
BASE COUNT          298 a          602 c          581 g          277 t
ORIGIN      
        1 ggagtacctg gccaagcacc cggagaaacg cggccaggac ctggccacca cccgccgcgc
       61 ctgcgcgcgc tacaggggca acccggtgtc ggtgttcaac ttccttgagg gcacgcgcct
      121 gacgccacag aagcacgccc aacagaactc gccattcaag tacctgctca agcccaaggc
      181 cggcggcatc gccttcgtgc tggacgccat gggcgagcag ctggacgcca tcgtcaacgt
      241 caccatccac tacccgaacg gcaatcccgg cttctgggac ctgctgagcg gcaacctcga
      301 cgaggtggtg gtgcgcttcg acaagctggc cgtgcccggc gaattcatcg gccgcaacta
      361 cgaccaggac gaggagtacc gcctgcgctt ccagcagtgg gtcaatgcgc tgtgggaggc
      421 caaggacgcg cagctggagc ggctgcacca gcagttccca ggccgtggct gaacgaccgg
      481 gcgcgctcct agtcgcgcct cgttccgcgt tcggctgaac gggatcagcc aatcacctgc
      541 ggcggctcgt cgggctgcca ggtgctccat tccaggcgcg gcggaaaggc cgcggcccgc
      601 gccaccggca gccccggcgc caccaggaaa ccctgcatgg ccgtgcagcg atgggcgatc
      661 agccagtcgc gctgctccag ggtttccacc ccttcggcga tgacctccag gcccagatgg
      721 tggccgagat cgatgatggt gctgacgatc gccgcgtcct tcggcgagtc gagcatgttg
      781 gccacgaaca ggcgatcgat cttcagtgtg tccaggtcga aatggcgcag gtaggccagc
      841 gaggaatggc cggtgccgaa gtcgtcgatg gcgatgcgca cgcccagcgc gcgcagctga
      901 cgcaactgct cgcgggtggc gtcgaggtcc tgcatcagcg ccccttccgt cacctccagt
      961 tccagctgcg acgggttcag cccgtggctc tccagcaccc ggcgcagctc gtcgaccagt
     1021 tgcggcatgc cgaactgcac ggggctgaca ttgaggctga gcagcaactg gtcgccgaac
     1081 tgcgcctgcc aggcccggca ctggcgcacg ccctggttga agatccagtc gcccaggcga
     1141 ttgatcaggc gcgtctcttc cagcagcgga atgaacacgc ccggcgtgat ggtgcccgcc
     1201 acccggtgct cccaacgcag cagcgcctcg aaaccgcgca ggcggccgct ggccaggtcg
     1261 atctgcggct ggtacaccag cacgaagtcg tcctgctcga tggcgttgcg caggctctcc
     1321 tcgagcatca gccgcgaacg cgcgcggccg ttcatctccg gcgagaagaa gcggtactgc
     1381 tgacgaccgg cgcgcttggc ctcgtacatg gccatgtcgg cggagcgcag caggcggtcg
     1441 accgtgttgc cgcactcggg ataaaccgag atgccgatgc tcgcgcccag ggtgaagtcg
     1501 atgccgtcga ccttgtgccg caccgagatg gtctcgatca gcttctccgc cacccgcgcc
     1561 gcatcctcgg ggtggtcgag ggtgtcgagc agcgcggtga attcgtcgcc gcccatgcgc
     1621 gcgacgatgt cgtatggccg caggcagtgc ttgagctgct cgccgacctt gcgcaggatc
     1681 tcgtcgccgg catcgtggcc gagcgaatcg ttgatgcgtt tgaagccgtc caggtccagg
     1741 tagagcacgg ccatgcgc
//
LOCUS       DATIHC010000927         5020 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_15932, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000927 DATIHC010000000
VERSION     DATIHC010000927.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5020
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15932"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..590)
                     /gene="imuA"
                     /locus_tag="VLF16_15350"
     CDS             complement(<1..590)
                     /gene="imuA"
                     /locus_tag="VLF16_15350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016986862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009432 - SOS response [Evidence IEA];
                     GO_process: GO:0051782 - negative regulation of cell
                     division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translesion DNA synthesis-associated protein
                     ImuA"
                     /protein_id="HSX72307.1"
                     /translation="MNASVIALDRLLDERRVWKGQPLGPAVGTQPSGHAALDAALPSG
                     GWPEAALSEILLPMPGRGELQLLWPTLSRLSRAGERLVLVAPPFLPYAPAWQAAGLDL
                     QSLEVIRAGEEDALWAAEQCLRSGSCGAVLCWPRQASDRALRRLQVAAETGQTLGFAY
                     RPASAAHNPSPAALRLLLEGPARVRVLKCRGGLAPAR"
     gene            785..2857
                     /gene="dnaX"
                     /locus_tag="VLF16_15355"
     CDS             785..2857
                     /gene="dnaX"
                     /locus_tag="VLF16_15355"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HSX72308.1"
                     /translation="MSYQVLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFT
                     GTRGVGKTTIARIIAKCLNCETGISASPCGQCSVCREIDEGRFVDLIEVDAASRTKVE
                     DTRELLENVQYAPTRGRYKVYLIDEVHMLSTHSFNALLKTLEEPPPHVKFLLATTDPQ
                     KLPVTILSRCLQFSLKNMPPERVVEHLTHVLTAESIPFEEDALWLLGRAADGSMRDAM
                     SLTDQAIAFGEGKVLACDVRSMLGTLDHGQVYGVLHALLEGDARALLEAVRHLAEQGP
                     DWNGVLAEMLNVLHRVAIAQALPEAVDNGQGDRDKVLALARALPAEDVQFYYQMGLIG
                     RRDLPLAPEPRGGFEMVLLRMLAFRPADADGAPPRSPLKELPLKNLGISKATADSDKT
                     PVAGAAPVAAPAAIVAPVAPAVAQPVPVPAPAPAPVVASDPEPLPKPVPAVVATPPAE
                     SAAMLEALAEPAAAVDVPWAQSAPVEPSPPPAPVAAQPQVAIVEGPADEPVALPLGES
                     AAHVVAAAEDDDEPPPGDYDYYEADADSLDYDFDAPAQPEAVVAEPLPAAQPATGLAA
                     EWLDLFPRLGLSGMTGSIGANCTLVEASGDDWLLHLDPAHSALFNATQQRRLNEALNQ
                     HLGRNLKLRIELLRPEQETPAQAAARRRAERQRQAEQSIHDDPLVQQMIQQFGAAIRA
                     DSIEPLTL"
     gene            2882..3208
                     /locus_tag="VLF16_15360"
     CDS             2882..3208
                     /locus_tag="VLF16_15360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HSX72309.1"
                     /translation="MMKGGMAGLMKQAQQMQEKMQKMQEELANAEVTGQSGAGLVSVV
                     MTGRHDVKRITLDDSLMQEDKEVLEDLIAAAVNDAVRKIEQNSQEKMSGMTAGMQLPP
                     GFKMPF"
     gene            3479..4078
                     /gene="recR"
                     /locus_tag="VLF16_15365"
     CDS             3479..4078
                     /gene="recR"
                     /locus_tag="VLF16_15365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017516838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HSX72310.1"
                     /translation="MSFSPLIRQLIDSLRLLPGVGQKTAQRMALQLLERDRSGGMRLS
                     QALAAAMEGVGHCKQCRTLSEDELCPQCSDPRRDDALLCVVEGPLDVFAVEQTGYRGR
                     YFVLKGHLSPLDGLGPEAIGIPELLAHIGASQFSEVILATNPTVEGEATAHYIAQMLT
                     GKNIVLSRIAHGVPLGGELELVDGGTLAHALAGRRPISG"
     gene            complement(4079..4564)
                     /locus_tag="VLF16_15370"
     CDS             complement(4079..4564)
                     /locus_tag="VLF16_15370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017516837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSX72311.1"
                     /translation="MLSPVRVRAAGLADVPMLLALMRELAAFEDYLAEFAVDEQALRQ
                     RAFGPAAQCQVFVAEAEGELLGYALALLIPFTYDLRPTARLKELYVRPTRRSSGLGRQ
                     LLVELARWARGQGAGRLHWDVLAGNARAESFYQRLGGRPVQKWIAYEMDDAALQRLAR
                     G"
     gene            complement(4558..4998)
                     /locus_tag="VLF16_15375"
     CDS             complement(4558..4998)
                     /locus_tag="VLF16_15375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015270095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HSX72312.1"
                     /translation="MMSLVSQFPAASSTVALMHFSQRLSFETDCSDVHHSQQEGKVDF
                     VLLDVRGETAYAAGHVPGALNLPHRLMSAERMAEFPRNTLFVVYCAGPHCNGVHRAAV
                     RLANLGYAVKEMIGGVTGWLDEGLSLVGGDAQPSAAPQSVSCAC"
BASE COUNT          857 a         1740 c         1685 g          738 t
ORIGIN      
        1 cgggccggcg caaggccgcc gcgacacttg agcacgcgca cccgcgccgg tccttccaaa
       61 agcagacgca gggcggcggg cgaggggtta tgggcggcgc tggccggacg ataggcgaag
      121 cccagggtct gcccggtttc ggccgctacc tgcaggcggc gcaaggcgcg gtcgctggcc
      181 tggcgcggcc agcacagcac ggcgccgcaa ctgccggagc gcaggcattg ctcggcggcc
      241 cacagggcgt cttcctcgcc agcgcgaatc acctccagcg attgcaggtc gagcccggcc
      301 gcctgccagg ccggggcgta gggcaggaag ggcggggcga ccagtaccag gcgctcgcct
      361 gcccggctca ggcgggacag ggtcggccac agcaactgca gttcgcctcg acccggcatg
      421 ggcaggagaa tctcgctcag ggccgcctcc ggccagccgc cgctgggcag agcggcatcc
      481 agtgcggcgt gcccgctcgg ctgggtgccg acggccggcc ccaggggctg gcctttccag
      541 acacggcgct cgtcgagcag tcgatccagg gcgatgaccg atgcattcat ggcaggcacc
      601 ggaaagaaga agaggctggg gagggcatga gaaaatcgcc aaatactgta tataaaaaca
      661 gtattcgatg agtccggtgc cggcaagccc ggtccgatga ggggcacgga ccgcggcgga
      721 tgcaatttgc ccggtgctcc gctaggatta gccacttccg cactcccagc cgcgacggtt
      781 tttcatgagt tatcaggttc ttgcacgtaa atggcgcccg cgcagcttcc gcgagatggt
      841 cggccagacc catgtgctca aggctctgat caacgcgctg gacagccagc gcctgcacca
      901 cgcctacctg ttcaccggta cccgcggcgt gggcaagacc accatcgcgc ggatcatcgc
      961 caagtgcctg aactgcgaga ccggcatcag cgccagcccc tgcggccagt gctcggtgtg
     1021 ccgggagatc gacgagggcc gcttcgtcga cctgatcgag gtggacgccg cgagccgcac
     1081 caaggtcgag gacacccgcg agctgctgga gaacgtgcaa tacgcaccga cccgcggccg
     1141 ctacaaggtc tacctgatcg acgaagtgca catgctctcc acgcactcgt tcaacgcgct
     1201 gctcaagacc ctcgaagagc ctccgcccca cgtcaaattc ctgctcgcca ccaccgaccc
     1261 gcagaaactg ccggtcacca tcctctcgcg ctgcctgcag ttcagcctga agaacatgcc
     1321 gccggagcgg gtggtcgagc acctgacaca tgtactgact gccgagagca ttccgttcga
     1381 agaagacgcc ctgtggctgc tcggtcgcgc cgccgatggc tcgatgcgcg acgccatgag
     1441 cctcaccgac caggccatcg ccttcggtga aggcaaggtg ctggcgtgcg acgtgcgttc
     1501 gatgctcggc accctcgatc acggccaggt ctacggcgtg ctgcatgcgc tgctggaagg
     1561 cgatgcccgc gcgttgctgg aagcggtacg ccacctggcc gagcagggcc cggactggaa
     1621 cggcgtgctc gcggaaatgc ttaacgtgct gcaccgcgtg gccatcgccc aggcgctgcc
     1681 ggaggcggtg gacaacggcc agggcgaccg cgacaaggtg ctggcactgg cccgggcgct
     1741 gccggccgag gacgtgcagt tctactacca gatgggcctg atcggccgcc gcgacctgcc
     1801 gctggcgccg gagccgcgcg gcggcttcga gatggtgctg ctgcgcatgc tggcgttccg
     1861 cccggccgat gccgatggcg cgcccccacg ctctccattg aaagagctac cgctaaagaa
     1921 tctggggatc agcaaggcca cagctgattc cgacaagacc ccggtggccg gcgcagcccc
     1981 cgttgccgcg ccggccgcta tcgttgctcc ggttgctccg gctgttgcgc agcctgtacc
     2041 tgtcccggct ccggctccgg ctccggttgt tgcatcggat cccgaaccgc tccccaaacc
     2101 cgttcccgcc gtggtcgcca cgccgccggc cgagtccgca gccatgctcg aggcgctggc
     2161 cgagcccgcg gcggctgtcg atgtgccctg ggcacagagc gcgccggtcg agcccagccc
     2221 gcctccggct ccggtcgccg cccagcccca ggtcgccatc gtggaaggcc ccgcggatga
     2281 gcccgtggcg ctgccgctgg gcgagtcggc ggctcatgtg gtcgccgccg ccgaggatga
     2341 cgacgagccg ccgcctgggg actacgacta ctacgaggct gatgccgaca gcctcgacta
     2401 cgatttcgat gcgccggccc agccggaggc cgtcgtggca gaaccactgc cggccgcgca
     2461 accggccacc ggcctggctg ccgagtggct cgacctgttc ccgcgcctgg ggctgtccgg
     2521 catgaccggc agcatcggcg ccaactgcac cttggtcgag gccagcggcg acgattggct
     2581 gctgcacctg gacccggccc acagcgcgct gttcaatgcc acccagcagc gtcgcctgaa
     2641 cgaggcgctc aaccagcacc tggggcgcaa cctgaagctg cgcatcgagc tgctgcgccc
     2701 cgaacaggaa accccggccc aggccgccgc gcgcaggcgc gccgagcgcc agcgtcaggc
     2761 cgaacagtcg atccacgacg acccgctggt gcagcagatg attcaacagt tcggcgccgc
     2821 gatccgcgcc gactccatcg aacccctgac tctctgagtc ggatagctga ggaacatcac
     2881 catgatgaaa ggcggcatgg caggcctgat gaagcaggcc cagcagatgc aggaaaagat
     2941 gcagaagatg caggaagagc tggccaacgc cgaagtcacc ggccagtccg gcgccggcct
     3001 ggtgagcgtg gtgatgaccg gccgccacga cgtcaagcgc atcaccctgg acgacagcct
     3061 gatgcaggaa gacaaggaag tgctggaaga cctgatcgcc gccgcggtga acgacgccgt
     3121 gcgcaagatc gagcagaaca gccaggagaa gatgtccggc atgaccgccg gcatgcagct
     3181 cccgcccggc ttcaaaatgc ctttctgata aacgtgccgc ccagccactg cacatagctg
     3241 tgttgcaagc cggcccgggc atcctcattt acggccagta aactccggtg cccgtgccgt
     3301 cttgcgcctt gctctgcaca gcgtctgaac ggcacttaca ccgcaatggc tccagcccgt
     3361 agcccggatg caatccgggg ctcctaagcc tcgtagcccg gatgaaatcc gggaacagcc
     3421 aactcccgga ttgcatccgg gctacatgtc ctgaccattc gaatagcgac acttgcccat
     3481 gagcttcagc ccgctgatcc gccaactgat cgattcgctg cgcctgctgc ccggtgtcgg
     3541 gcagaagact gcgcagcgca tggccctgca gctgctggag cgtgaccgca gcggcggcat
     3601 gcgtctgtcg caggcgctgg cggcggcgat ggagggggtc gggcactgca agcagtgccg
     3661 caccctgagc gaagacgagc tgtgcccgca gtgcagcgac ccgcgccgcg acgacgcgtt
     3721 gttgtgcgtg gtcgaggggc cgctggacgt gttcgcggtg gagcagaccg gctatcgcgg
     3781 gcgctacttc gtgctcaagg gtcatctctc tccgctggac ggcctgggcc cggaggctat
     3841 cggtattccc gagctgctgg cgcatattgg cgccagccag ttcagcgaag tgatcctcgc
     3901 caccaacccg acggtggaag gcgaggccac ggcccactac atcgcgcaga tgctgacggg
     3961 caagaacatc gtgctgtcgc gcatcgccca cggtgtgcca ctgggcggcg agttggagtt
     4021 ggtggacggc ggcaccctgg cccatgcgct ggccgggcgc cggccgatct ccggctgatc
     4081 agccacgcgc cagcctctgc agcgcggcgt catccatctc gtaggcgatc catttctgca
     4141 ccgggcgacc gcccaggcgc tggtagaagc tttccgcgcg cgcattgccg gctagcacgt
     4201 cccagtgcag gcgtccggcg ccttgtccgc gcgcccagcg cgccagctcg accagcaact
     4261 gccggcccag gcctgacgag cgccgagtgg ggcgcacata cagctccttg agccgggccg
     4321 tgggccgcag gtcgtaggtg aacggaatca gcagcgccag cgcataaccg agcagctcgc
     4381 cctcggcctc ggcgacgaac acttggcact gcgcggcggg gccgaaggcg cgctggcgta
     4441 gcgcctgctc gtccacggcg aactccgcca ggtagtcctc gaacgccgcc aattcgcgca
     4501 tcagcgccag cagcatgggc acgtccgcca ggccggcggc acgtacccgc acagggctca
     4561 gcatgcgcag ctgacgctct gcggcgctgc gctcggctgg gcatcgccgc cgaccaggct
     4621 caggccctcg tcgagccagc cggtgactcc gccgatcatc tccttcaccg cgtaaccgag
     4681 gttggccagg cgcacggccg cgcggtgcac gccgttgcag tgcgggccgg cgcagtagac
     4741 gacgaacagg gtgttgcgcg ggaactcggc catgcgctcg gcgctcatca ggcggtgcgg
     4801 caggttgagc gcgcccggca cgtggccggc agcgtatgcc gtctcgccgc gcacatcgag
     4861 caggacgaag tcgaccttac cttcctgctg gctgtggtgg acgtccgagc aatcggtctc
     4921 gaagctcagg cgctggctga aatgcatcag ggcgacggtg gaagaggcgg cggggaactg
     4981 gctgaccagg ctcatgatgg cactcctcgt ggtgggggat
//
LOCUS       DATIHC010000928         2038 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27621, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000928 DATIHC010000000
VERSION     DATIHC010000928.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2038
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27621"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..348)
                     /locus_tag="VLF16_15380"
     CDS             complement(<1..348)
                     /locus_tag="VLF16_15380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CHC2 zinc finger domain-containing protein"
                     /protein_id="HSX72313.1"
                     /translation="MAGLIPQSFIDDLLNRTDIVEVVSSRIQLKKAGKNYTACCPFHK
                     EKTPSFSVSPDKQFYYCFGCGAGGNALGFVMDHDSLDFPQAVEDLAKRAGMDVPREES
                     GRGRTPRQPTDSPL"
     gene            complement(502..717)
                     /gene="rpsU"
                     /locus_tag="VLF16_15385"
     CDS             complement(502..717)
                     /gene="rpsU"
                     /locus_tag="VLF16_15385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002551877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HSX72314.1"
                     /translation="MPAVKVKENEPFDVALRRFKRSCEKAGVLAEVRSREFYEKPTTE
                     RKRKAAAAVKRHAKKVQREQRRRERLY"
     gene            921..1946
                     /gene="tsaD"
                     /locus_tag="VLF16_15390"
     CDS             921..1946
                     /gene="tsaD"
                     /locus_tag="VLF16_15390"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HSX72315.1"
                     /translation="MLVLGLETSCDETGVALYDSQRGLLADALFSQIDLHRVYGGVVP
                     ELASRDHVKRMLPLIRQVLAEAGAEREQIEAVAYTSGPGLVGALLVGAACAQALAFAW
                     GIPAVGVHHMEGHLLAPMLEEAPPAFPFVALLVSGGHTQLVRVDGIGRYQLLGESLDD
                     AAGEAFDKTAKLMGLRYPGGPEIARLAESGTPGRFTFPRPMTDRPGLDFSFSGLKTFT
                     LNTWQQCRDAGDASEQTRADVARAFQDAVVDTLTIKCKRALKQTGLNSLVIAGGVSAN
                     SALRQSLESMLAGLKGRVFYARPRFCTDNGAMIAYAGCQRLLAGQHEGPEIMVQARWP
                     MEQLPAI"
     gene            complement(1966..>2038)
                     /locus_tag="VLF16_15395"
     CDS             complement(1966..>2038)
                     /locus_tag="VLF16_15395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycerol-3-phosphate acyltransferase"
                     /protein_id="HSX72316.1"
                     /translation="TGLIVWRHRGNLRDLVAGRERHF"
BASE COUNT          327 a          649 c          699 g          363 t
ORIGIN      
        1 gagcggcgag tcggtaggct ggcgcggggt gcggccgcgg ccgctttcct cgcgcggtac
       61 gtccatgccg gcgcgcttgg ccagatcctc gacggcctgg gggaagtcca ggctgtcgtg
      121 gtccatgacg aagccgaggg cattgccgcc ggcgccgcag ccgaagcagt agtagaactg
      181 cttgtccggg ctgacgctga aggagggggt cttctccttg tggaacgggc agcaggcggt
      241 gtagttcttg ccggccttct tcagctggat gcgcgaactc accacctcga ctatgtcggt
      301 gcggttgagc aggtcatcga tgaaggactg cgggatcagg ccggccatga gctcgtcggt
      361 gtgctgttgc cagaggcggg agcataaacg aaaaaactcc ggtcattcgc cggatggcga
      421 agcggagtcg ggtacagcca gaaatgcaaa gcccggccgg agccgggcat cgcggaagcc
      481 tttagcggcg cgactgataa ctcagtacag gcgctcgcgg cgacgctgct cgcgctgcac
      541 tttcttggca tggcgcttaa cagcggcagc ggccttgcgc ttacgctcgg tggtgggctt
      601 ctcgtagaac tcgcggctgc ggacttcggc caggacgccg gccttttcgc aggagcgctt
      661 gaaacgacgc agagctacgt cgaagggttc gttctcttta actttgacgg ctggcatcca
      721 ggtcgtacct tcactgtttt accgaatgga cgacgcgatc cggcaagggc acgggagtac
      781 gtcggttttc aagggctgcg gatattaacg cctcacgcca aggaatgcaa agcctctgat
      841 cgaaaagcgc tggcccggcc gaggggcgac gattatcatg cgcgcctcct tttatagcca
      901 gtgttgaagg ttctaacccc atgctagtgc tgggcctgga aacctcctgc gacgagaccg
      961 gcgtcgctct ctacgacagc cagcgcggcc tgctggccga tgccctgttc agccagatcg
     1021 acctgcaccg cgtctacggc ggcgtggtgc cggagctggc ctcgcgcgac cacgtcaagc
     1081 gcatgctgcc gctgatccgc caggtgctgg ccgaggccgg tgccgagcgc gagcagatcg
     1141 aggccgtcgc gtatacctcg ggccccggcc tggtcggcgc gctgctggtc ggcgccgcct
     1201 gcgcccaggc gttggcgttt gcctggggca ttccagccgt aggcgtgcac catatggagg
     1261 gccacctgct ggccccgatg ctggaggaag cgccgccggc cttcccgttc gtcgcgctgc
     1321 tggtctccgg cggccacacc cagctggtgc gggtcgacgg catcggccgc tatcagttgc
     1381 tcggcgagtc gctggacgac gccgccggcg aggcgttcga caagaccgcc aagctgatgg
     1441 gtctgcgcta cccgggtggc ccggaaatcg cccgtctggc ggaatccggc acgccggggc
     1501 gcttcacctt cccgcgaccg atgaccgatc gtcccggcct ggacttcagc ttcagcggcc
     1561 tgaagacctt taccctcaac acctggcagc agtgccgcga tgccggtgac gccagcgagc
     1621 agacccgcgc cgatgtcgcc cgggcgttcc aggatgcggt ggtcgatacc ctgaccatca
     1681 agtgcaagcg cgcgctcaag cagaccggcc tcaacagcct ggtgatcgcc ggcggcgtga
     1741 gtgccaactc ggccctgcgc cagtcgctgg aaagcatgct ggccgggctc aagggtcggg
     1801 tgttctacgc ccgtccgcgc ttctgcaccg acaacggcgc gatgatcgcc tacgccggct
     1861 gccagcgcct gttggccggt cagcacgagg ggccggagat catggtgcag gcgcgctggc
     1921 cgatggagca gctgcccgcc atatgagcgt ggctcagctt ggggtttaga aatgtcgttc
     1981 gcgtccggct accaggtcgc gtagattgcc gcgatggcgc cagacgatca gcccggtc
//
LOCUS       DATIHC010000929         1689 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_39026, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000929 DATIHC010000000
VERSION     DATIHC010000929.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1689
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39026"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..333
                     /locus_tag="VLF16_15400"
     CDS             <1..333
                     /locus_tag="VLF16_15400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016394016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDOD domain-containing protein"
                     /protein_id="HSX72317.1"
                     /translation="EQHLLGITREQIGAWLMRFWDMPEELATALRFQHDPDYDGAHAA
                     YPNLVCLAVNLLRSRGIGSGPQHELPDALFERLGISREKAEDALNKVLQAEVALRELA
                     SQFNHSPH"
     gene            complement(375..1103)
                     /locus_tag="VLF16_15405"
     CDS             complement(375..1103)
                     /locus_tag="VLF16_15405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010489166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72318.1"
                     /translation="MRLAPLFTAALLVLSAPVRAADATLERVLDLAGVKLLCEQTAPL
                     LQRGMNAEQQKALGQAFAAGPLCTDLAKRVASRLKPEQSRQALALLESPLAQHFTAAE
                     RAVGDDGGLATYRQQLQERPPLGKRVELVRRLDKAAHTTELATLLRYEVGKTQALLAL
                     RARGGDLDEQALAEQTAAQRAPLRESSAKGIEAFMLYAYRQTPSDRLGDYAALYEQAP
                     LRAVLEASVAALPQVFAARRATLK"
     gene            complement(1172..1570)
                     /locus_tag="VLF16_15410"
     CDS             complement(1172..1570)
                     /locus_tag="VLF16_15410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase"
                     /protein_id="HSX72319.1"
                     /translation="MKFRFLLWMLGRLMAKASRTNAEFQQQLEGKALVFQLHTLDGKV
                     ARHYRIQDKRVTSHAGAAREPAFAIGFKDAAYGFATMNAKNKQLAFMQGIQNKDIQIQ
                     GNPALVIWFQGLLKHVVPKKKKKTEIKKAA"
BASE COUNT          252 a          555 c          610 g          272 t
ORIGIN      
        1 gagcagcacc tgctgggcat cacccgcgag cagatcggcg cctggctgat gcgcttctgg
       61 gacatgccgg aagaactggc caccgcccta cgcttccagc acgacccgga ctacgacggc
      121 gcccacgccg cctaccccaa cctggtgtgc ctggcggtca acctgctgcg cagccgcggc
      181 atcggcagcg gcccccagca cgaactgccg gacgccctgt tcgagcgcct gggcatcagc
      241 cgcgagaagg ctgaggacgc gctgaacaag gtgctgcagg cggaagtggc gctgcgcgag
      301 ctggcctcgc aattcaatca ctcgccgcat tgatcgaact gcgcacatga aaaaggggcc
      361 ctcggcccct tttctcattt cagcgtggcg cgtcgcgcgg cgaagacctg tggcagcgcc
      421 gccacgctgg cctccagcac cgcacgcagc ggcgcctgct cgtagagcgc cgcgtagtcg
      481 ccgagccggt cgctgggcgt ctggcggtag gcgtagagca tgaaggcctc gatgcccttg
      541 gcgctggact cgcgcagcgg cgcgcgctgg gcggcggtct gttcggccag ggcctgctcg
      601 tcgaggtcgc cgccacgggc acgcagcgcc agcagggcct gggtcttgcc cacttcgtag
      661 cgcagcaggg tggccagctc ggtggtgtgg gcggccttgt ccaggcggcg caccagctcc
      721 acgcgcttgc ccagcggagg gcgctcctgc agctgctggc ggtaggtggc caggccgccg
      781 tcgtcgccga ccgcacgctc ggcggcggtg aagtgctggg ccagcgggct ctccagcaac
      841 gccagggcct gccgcgactg ctccggcttg agcctggatg ccacgcgctt ggccaggtcg
      901 gtgcacagcg ggccggccgc gaaggcctgg cccagggcct tctgctgctc ggcattcatg
      961 ccgcgctgca gcagcggagc ggtctgctcg cagagcagct tgacgccggc caggtcgagc
     1021 acccgctcga gggtggcatc ggccgcacgc acgggagccg acagcacgag cagggcggcg
     1081 gtgaagaggg gagcgagacg catgggacgg ttccgtggaa aaggctcagc ctagccaagc
     1141 ggccggcggc ggaccagagc gggaaagcgg ctcaggccgc tttcttgatc tcggtcttct
     1201 ttttcttctt cggcaccacg tgcttgagca ggccctggaa ccagatgacc agcgccggat
     1261 tgccctggat ctggatgtcc ttgttctgga tgccctgcat gaaggccagc tgcttgttct
     1321 tggcgttcat ggtggcgaag ccgtaggccg cgtccttgaa gccgatggcg aaggccggtt
     1381 cacgtgccgc gccggcgtgg ctggtgacgc gcttgtcctg gatgcggtaa tggcgggcga
     1441 ccttgccgtc gagggtgtgc agctggaaca ccagcgcctt gccttccagc tgctgctgga
     1501 actcggcatt ggtacgactg gccttggcca tcaggcggcc cagcatccag aggagaaagc
     1561 ggaatttcat ggcgcgcggc ctcgaggtgg tgaaatcggc ggcgcattgt agcggatggc
     1621 gcggggcact acatcccgtc tggcgggcgg cctgcgcact ggagggggtg gcccggagtc
     1681 cctagactc
//
LOCUS       DATIHC010000930         3028 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_22801, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000930 DATIHC010000000
VERSION     DATIHC010000930.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3028
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22801"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1440
                     /gene="ggpS"
                     /locus_tag="VLF16_15415"
     CDS             <1..1440
                     /gene="ggpS"
                     /locus_tag="VLF16_15415"
                     /EC_number="2.4.1.213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008172505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033828 - glucosylglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006970 - response to osmotic stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucosylglycerol-phosphate synthase"
                     /protein_id="HSX72320.1"
                     /translation="LQRRRPTSPNGIIPTLLSFFADGRKGSWVAWAVHEDDGEAFETH
                     TTVDAERYPRLTAARVPLSKTQVDIFYKRFSKEAFWPTLHTFWERASFNEDDWQVFCE
                     VNRAFAERTACEAAEGAVVWLHDYNLWMVPAYLRELRPDLRIAFFHHTYFPSADVFNV
                     LPWRRQIIGSLLQCDHVGFHIPRQVENFVDAARGVFPLKTLARQNCAPRFLSYGCAVG
                     LDRMTTLLDAGNRRISLGAHPVGLDIDRVRAALEHPRCVALRNGLREELAGVRLILSV
                     ERLDYTKGIIEKLNAYERLLDDNPELIGKVTLVSICVPAASEMTVYDELQAQIEQAVG
                     RINGRFARVGWTPLQFYFRSLPFEEVSAWYAMADVMWITPLRDGLNLVAKEFVAVQGL
                     LEGSGVLVLSEFAGAAAELKGALLTNPHDPADLPHTCYLALNLPKNEAQARLRELFDI
                     VAFNDIRRWGDDFLAAVGLDTAEALQRAV"
     gene            complement(1444..1866)
                     /locus_tag="VLF16_15420"
     CDS             complement(1444..1866)
                     /locus_tag="VLF16_15420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003241888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase/bleomycin resistance/extradiol
                     dioxygenase family protein"
                     /protein_id="HSX72321.1"
                     /translation="MNIHAYLIFDGNCAEAFRFYQQVLGGELQVMTFGDSPACGDVAP
                     EHRDRTMHACLCVGDQMLMASDCMPGDAHEGVKGCHMSIQADDMGHAERLYRELGAQG
                     SVQMELQRTFWAEGFAMLTDRFGVPWMINYSGDCQPPA"
     gene            complement(1878..2300)
                     /locus_tag="VLF16_15425"
     CDS             complement(1878..2300)
                     /locus_tag="VLF16_15425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HSX72322.1"
                     /translation="MRFMVIVKATADSEAGVMPSEELLAAMGKYNEELVAAGIMKAGE
                     GLHPSSKGVRVRFSGADRSVIDGPFAETKELIAGFWLWEVGSLEECIEWVKRCPNPMP
                     GESDIEIRQVFEAEDFGEEFTPELREQEERLRARLANE"
     gene            complement(2525..>3028)
                     /gene="pgl"
                     /locus_tag="VLF16_15430"
     CDS             complement(2525..>3028)
                     /gene="pgl"
                     /locus_tag="VLF16_15430"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020192701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017057 - 6-phosphogluconolactonase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HSX72323.1"
                     /translation="KVQVSLADERWVPPSDADSNEALVRRHLLQGPAAQATMLGLYRA
                     AEDLDEAARLAEQALAALPAIDVLVLGMGDDGHTASLFPDSPNLTAALDAGCPRRVLP
                     MQAPSEPRQRLTLTLPALAGARLALLAIQGAGKLATLNQALRPGPASELPIRAFLQAP
                     LQVHWSP"
BASE COUNT          460 a         1089 c          988 g          491 t
ORIGIN      
        1 ctgcagcgcc gccgccccac ctcacccaac ggcatcatcc cgaccctgct gagcttcttc
       61 gccgacggcc gcaagggctc ctgggtcgcc tgggccgttc acgaggacga tggcgaggca
      121 ttcgagaccc acaccacggt ggatgccgaa cgctacccga ggctcaccgc ggcgcgggtg
      181 ccgctgagca agacgcaggt cgacatcttc tacaagcgct tctccaagga agccttctgg
      241 ccgaccctgc acaccttctg ggagcgcgcc agcttcaacg aggacgactg gcaggtgttc
      301 tgcgaggtca accgcgcgtt cgccgagcgc accgcgtgcg aggcggccga aggcgcggtg
      361 gtgtggctgc acgactacaa cctgtggatg gtgccggcct acttgcgcga actgcgcccg
      421 gacctgcgca tcgccttctt ccaccacacc tatttcccct cggcggacgt gttcaacgtg
      481 ctgccgtggc ggcgccagat catcggcagc ctgctgcagt gcgaccatgt cggcttccat
      541 atcccgcgcc aggtggagaa cttcgtcgac gccgcccgcg gcgtcttccc gctgaagacg
      601 ctggcccggc agaactgcgc gccgcgcttc ctcagctacg gctgtgcggt aggcctggac
      661 cgcatgacca ccctgctcga tgccggcaac cggcgcatca gcctcggcgc ccacccggtg
      721 ggcctggaca tcgaccgcgt ccgcgccgcg ctcgagcacc cgcgctgcgt ggccctgcgc
      781 aatggcctgc gcgaagagct ggccggggtg cgcctgatcc tttcggtcga gcggctcgac
      841 tacaccaagg gcatcatcga gaagctcaac gcctacgaac gcctgctgga cgacaacccg
      901 gagctgatcg gcaaggtcac gctggtctcc atctgcgtac ccgccgccag cgaaatgacc
      961 gtctacgacg agctgcaggc gcagatcgaa caggccgtgg gtcggatcaa cggccgcttc
     1021 gcccgcgtcg gctggacgcc gctgcagttc tacttccgca gcctgccgtt cgaggaggtc
     1081 agcgcctggt atgcgatggc cgatgtcatg tggatcaccc cgctgcgcga cggcctcaac
     1141 ctggtggcca aggaattcgt cgccgtccag ggcctgctcg agggcagcgg cgtgctggtg
     1201 ctgtcggagt tcgccggcgc cgcggccgag ctgaagggcg cgctgctgac caacccgcac
     1261 gacccggcgg acctgccgca cacctgctac ctcgccctca acctgccgaa gaacgaggcg
     1321 caggcacgcc tgcgcgagct gttcgacatc gtcgccttca acgacatccg ccgctggggc
     1381 gacgatttcc tcgccgccgt gggcctggac accgccgagg cgctgcagcg ggccgtctga
     1441 ggctcaggcc gggggctggc agtcgccgct gtagttgatc atccacggca cgccgaagcg
     1501 gtcggtgagc atggcgaagc cctcggccca gaaggtcctc tgcagctcca tctgcaccga
     1561 gccctgggcg ccgagctccc gatacaggcg ctcggcgtgg cccatgtcgt cggcctggat
     1621 cgacatgtgg cagcccttga cgccctcgtg ggcatcgccc ggcatgcagt cggaggccat
     1681 cagcatctga tcgccgacgc acaggcaggc gtgcatggtg cggtcgcggt gctccggcgc
     1741 cacatcgccg caggccggac tgtcgccgaa ggtcatcacc tgcagctcgc cgccgagcac
     1801 ctgctggtag aagcggaagg cctcggcaca gttgccgtcg aagatcaggt aagcatggat
     1861 gttcatcgcg tctctcctta ttcgttggcc aggcgggcgc gcaggcgttc ttcctgctcg
     1921 cgcagctcgg gggtgaattc ctcgccgaag tcctcggcct cgaacacctg gcggatctcg
     1981 atatccgact cgcccggcat cgggttggga cagcgcttga cccactcgat gcactcttcc
     2041 agcgagccga cttcccacag ccagaagccg gcgatcagct ccttggtttc ggcgaagggc
     2101 ccgtcgatca cgctgcggtc ggccccggag aagcgcacgc gcacgccctt gctgctcggg
     2161 tgcaggccct cgccggcctt catgatgcca gcggccacca gttcctcgtt gtacttgccc
     2221 atggccgcca gcagttcctc gctgggcatc acgccggctt ccgaatcggc cgtggccttg
     2281 actatcacca tgaatcgcat cgtccttctc ctcgtcgtgg tgggctcgcc ggagggcgac
     2341 ccgggctgat cgatgaaccc cgacaggggg ttctgtccct tggtcgagtg gcgtttcggc
     2401 aaatcgacag gcctgcgaaa aatttttcgc cgccgccgcg ggtcaagccc tgcacagaaa
     2461 ggtctcggcg caggtggtag ggtgcgctgt gcgcaccgct tccctcgcac gcacctcgtg
     2521 cccgttacgg cgaccaatgc acctgcaacg gtgcctgcag gaacgcgcga atcggcaact
     2581 cgctggcggg gcccggccgc agggcctggt tcagcgtagc cagcttgccg gcaccctgga
     2641 tcgccagcag cgccaggcgc gccccggcca gcgccggcag cgtcagggtc aggcgctggc
     2701 ggggctcgct cggcgcctgc atcggcaaca cccggcgcgg gcagccggcg tcgagcgcgg
     2761 cggtcaggtt cgggctgtcg ggaaacagcg aggcggtgtg gccgtcgtcg cccatgccca
     2821 gcaccagcac gtcgatggcc ggcaaagctg ccagggcctg ctcggccagc cgtgccgcct
     2881 cgtccagatc ctccgccgcc cgatacaggc cgagcatcgt cgcctgggcc gcaggcccct
     2941 gcagcaggtg acggcgcaca agcgcctcgt tgctgtcggc atcgctcggc ggcacccagc
     3001 gctcgtcggc caggctcacc tggacctt
//
LOCUS       DATIHC010000931         1512 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27629, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000931 DATIHC010000000
VERSION     DATIHC010000931.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27629"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..182)
                     /locus_tag="VLF16_15435"
     CDS             complement(<1..182)
                     /locus_tag="VLF16_15435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72324.1"
                     /translation="MPIRDWVFGVICGSTATYVCVMLLGILLPSWPFNLFFTPLALAC
                     LLLQWSFWMVALDPNQR"
     gene            complement(301..603)
                     /locus_tag="VLF16_15440"
     CDS             complement(301..603)
                     /locus_tag="VLF16_15440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013717471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72325.1"
                     /translation="MRLFMQFSACFALGLVVAGVLLIGLMFFDQFDLIRGINLSGRPL
                     AGVALALLPGGFWESLTGVPGAAGNADVQSFLQLCVALAQIALLLAAGFFRLWYRA"
     gene            complement(652..>1512)
                     /gene="creD"
                     /locus_tag="VLF16_15445"
     CDS             complement(652..>1512)
                     /gene="creD"
                     /locus_tag="VLF16_15445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018603535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein CreD"
                     /protein_id="HSX72326.1"
                     /translation="VLEQGERRLPFQPGSADPMLGAGVHAPLPMAVADIHQGQRLDFA
                     FDLLLQGTGELGIAPVGRETLVDLKADWPHPSFIGEYLPSEREIGAEGFTARWQTSFF
                     ATNMEEALNECASSGECHAFMTRQFGVSFVDPVDQYLKSDRALKYALLFIALTFAGFF
                     LFEVLKRLAVHPVQYGLVGLSLAMFYLLLLSLAEHMAFARAYALAASACVLLIGFYVS
                     HVLHSWLRGAGFTAALAGLYAMLYALLSAEDYALLMGSLLVFGLLAAVMVLTRKLDWY
                     GIAKPTTTIA"
BASE COUNT          311 a          492 c          506 g          203 t
ORIGIN      
        1 cgctgatttg ggtccaaagc gaccatccag aaggaccatt gcaacagcag acaggccagt
       61 gccagcggcg tgaagaacag attaaacggc catgacggca gcaaaattcc aaggagcatt
      121 acgcacacat aggttgcggt cgagccacag atcacaccaa acacccagtc ccttattggc
      181 atccgtcttt cctcttaact tttctctcgg gcaatgagcg atgcggatcg aacagccggg
      241 cgatacgccg cgccagcaga tgcccctgac gcgcctcctc gcgcaacccg acatgcccgc
      301 tcatgcgcgg taccacagac ggaagaagcc ggcggccagc agcagggcga tctgcgccag
      361 ggccacgcac agctgcagga acgactgcac gtcggcgttg ccggcggcgc cgggcacgcc
      421 ggtcaggctt tcccagaagc cgcccggcag cagcgccagg gcgacgccgg ccagcgggcg
      481 gccgctgagg ttaataccgc ggatcaggtc gaactgatcg aagaacatca ggccgatcag
      541 gagcactccg gccaccacca ggccgagggc gaaacaggcg gaaaactgca tgaacagacg
      601 gatcatggtg aatatctcgc aaggcgcggc cagggccgcg ccggtcggga gtcaggcgat
      661 ggtggtggtc ggcttggcga tgccgtacca gtcgagcttg cgggtcagca ccattaccgc
      721 ggcgagcagg ccgaacacca gcagcgagcc catcagcagg gcgtagtcct cggcggagag
      781 cagcgcatag agcatcgcgt agagcccggc cagcgccgcg gtgaagccgg cgccgcgcaa
      841 ccagctgtgc agcacgtggc tgacgtagaa gccgatcagc agcacgcagg ccgaggccgc
      901 cagcgcatag gcccgggcga aggccatgtg ttcggccagc gacagcagca acaggtagaa
      961 catcgccagc gacaggccga ccaggccgta ctgcaccggg tgcacggcca ggcgcttgag
     1021 cacctcgaag aggaagaagc cggcgaaggt cagggcgatg aacagcagcg cgtatttcag
     1081 cgcgcggtcg ctcttcaggt actggtcgac cgggtcgacg aagctgacgc cgaattggcg
     1141 ggtcatgaac gcatggcact cgccgctgct ggcgcactcg ttcaaggcct cctccatgtt
     1201 ggtggcgaag aagctggtct gccagcgcgc ggtgaagccc tcggcgccga tctcgcgctc
     1261 gctcggcagg tactcgccaa tgaagctcgg atgcggccag tcggccttca ggtcgaccag
     1321 ggtctcgcgg cccaccgggg cgatgcccag ctcgccggtg ccctgcagca acaggtcgaa
     1381 ggcgaagtcc aggcgttggc cctggtgtat gtcggccact gccatcggca gcggcgcgtg
     1441 tacgccggca ccgagcatcg ggtcggcgct gcccggctgg aacggcaacc ggcgctcgcc
     1501 ctgttccagc ac
//
LOCUS       DATIHC010000932         4497 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18219, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000932 DATIHC010000000
VERSION     DATIHC010000932.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4497)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4497)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4497
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18219"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1079
                     /gene="dnaA"
                     /locus_tag="VLF16_15450"
     CDS             <1..1079
                     /gene="dnaA"
                     /locus_tag="VLF16_15450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_064721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HSX72327.1"
                     /translation="PAPSRPTERTVQVEGALKHTSYLNRTFTFENFVEGKSNQMARAA
                     AWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMV
                     KALQLNAINEFKRFYRSVDALLIDDIQFFAKKERSQEEFFHTFNALLEGGQQVILTSD
                     RYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQTKVDLPHDAAFFIAQ
                     RIRSNVRELEGALKRVIAHSHFTNQPISIELIRESLKDLLALQDKLVSVDNIQRTVAE
                     YYKIKIADLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDAFGGRDHTTVLHACRK
                     IAELREADADIREDYKNLLRTLTT"
     gene            1110..2213
                     /gene="dnaN"
                     /locus_tag="VLF16_15455"
     CDS             1110..2213
                     /gene="dnaN"
                     /locus_tag="VLF16_15455"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_064722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HSX72328.1"
                     /translation="MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSL
                     TGTDLEVELVGRVTLEDSAEPGEITVPARKLMDICKSLPSDVMIDIRLDEQKLVVKAG
                     RSRFTLSTLPANDFPTVEEGPGSLTFNLVQSKLRRLIDRTSFAMAQQDVRYYLNGMLI
                     EVQTGVLRAVATDGHRLAMCAMEAAIENTERHQVIVPRKGILELARLLTEQDGEVAIV
                     LGANHIRATTGEFTFTSKLVDGKFPDYERVLPRGGDKLVIGDRQALREAFSRTAILSN
                     EKYRGIRLQLASGQLKIQANNPEQEEAEEEVVVDYNGGSLEIGFNVSYLLDVLGVMTT
                     EQVRLILSDANSSALVQEAGNDDSSYVVMPMRL"
     gene            2224..3324
                     /gene="recF"
                     /locus_tag="VLF16_15460"
     CDS             2224..3324
                     /gene="recF"
                     /locus_tag="VLF16_15460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012698699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HSX72329.1"
                     /translation="MSLSRVTVTAVRNLHPVTLSPSPRINILHGANGSGKTSLLEAIH
                     LLGLARSFRSNKLQPMIQYEQPACTVFGQVLREDRLHSNLGISRDRQGELQIRIDGQS
                     ARSTAQLAELLPLQVINPDSFRLLEGAPKVRRQFLDWGVFHVEPRFLPAWQRLQKALR
                     QRNSWLRHGTLDAASQAAWNRELCLASDELDGYRRTYIQALKPVFEQVLSELLDLEGL
                     TLSYYRGWDKDKPLADVLASTLTRDQQLGHTQAGPQRADLRLRLGGHNAAEILSRGQQ
                     KLVVCALRIAQGHLLNAAKQGQCIYLVDDLPSELDQRHRQALCRLLDDLQCQVFITCV
                     DQEYLKDGWRTETPVAMFHVEHGLITASGVNA"
     gene            3321..>4497
                     /locus_tag="VLF16_15465"
     CDS             3321..>4497
                     /locus_tag="VLF16_15465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010465497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSX72330.1"
                     /translation="MSDENNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVF
                     EVVDNSIDEALAGYCSEISITIHPDESITVRDNGRGIPVDMHKEEGVSAAEVIMTVLH
                     AGGKFDDNSYKVSGGLHGVGVSVVNALSKELILTIRRSGKVWEQTYVHGVPQAPLAAV
                     GDSEGTGTQIHFKPSEDTFKNIHFSWDILAKRLRELSFLNSGVGILLKDERSGKEELF
                     KYEGGLKAFVEYLNTNKTIVNQVFHFNIQRDEDGVGVEVALQWNDSFNENILCFTNNI
                     PQRDGGTHLAGFRSALTRHLNNYIEQEGLAKKFKIATTGDDAREGLTAIISVKVPDPK
                     FSSQTKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAR
                     "
BASE COUNT          953 a         1362 c         1356 g          826 t
ORIGIN      
        1 cgcccgctcc tagccgaccg accgagcgca ccgtgcaggt ggaaggtgca ctcaagcaca
       61 ccagttatct gaaccgtaca ttcaccttcg agaacttcgt cgagggcaaa tccaaccaga
      121 tggcccgagc cgcggcatgg caggtggcgg ataacctcaa gcacggttac aacccgctgt
      181 tcctctatgg aggcgtcggt ctgggcaaga cccacctgat gcatgcggtg ggcaaccacc
      241 tgctgaagaa gaacccgaac gcgaaagtcg tgtacctgca ttccgagcgc ttcgtcgccg
      301 acatggtgaa ggcgctgcag ctcaatgcga tcaacgagtt caagcgcttc taccgctcgg
      361 tggatgcgtt gctgattgac gatatccagt tcttcgccaa gaaggagcgc tcccaggagg
      421 agttcttcca cacattcaac gcactcttgg aaggcggtca gcaggtgatc ctcaccagcg
      481 atcgctaccc gaaggagatc gagggcctgg aagaacgcct gaagtcgcgc tttggttggg
      541 gtctgacggt ggcggtcgag ccgcccgagc tggagacgcg tgttgccatc ctgatgaaga
      601 aggccgagca gaccaaggtc gacctgccac atgacgccgc cttcttcatt gcccagcgca
      661 ttcgctccaa cgtgcgcgaa ttggaaggcg cgctcaagcg ggtgatcgct cactcgcatt
      721 tcaccaacca gccgatcagc atcgagctga tccgcgagtc gctgaaggac ctgctggccc
      781 tgcaggacaa gctggtgagc gtggacaata tccagcgcac ggtggccgag tactacaaga
      841 tcaagatcgc cgatctgctc tccaaacgcc gctcccgttc cgtggcgcgg ccgcgccagg
      901 tggccatggc cttgtccaag gaactgacca accatagcct gcctgaaata ggcgatgctt
      961 ttggcggaag agaccacacc acagtgctgc acgcctgtcg taagattgcg gaattgcgcg
     1021 aagccgacgc ggatatccgc gaggactaca agaatctgct gcgcaccctg accacttgat
     1081 acgcagccca caaggcaagg gactagacca tgcatttcac cattcaacgc gaagccctgt
     1141 tgaaacccct gcaactagtc gccggcgtcg tagaacgccg ccagaccttg ccggttctgt
     1201 cgaacgtgct gctggtggtc gaaggccagc agctgtcgct gaccggcacc gacctggaag
     1261 tcgagctggt tggtcgcgtg acgctggaag acagcgccga gccgggcgag atcaccgtac
     1321 cggcgcgcaa gctgatggac atctgcaaga gcctgccgag cgatgtgatg atcgacatcc
     1381 gcctcgacga gcagaagttg gtggtcaagg ccggtcgcag ccgctttacc ctgtctaccc
     1441 tgccggccaa tgacttcccc actgtggaag aaggtccggg ctcgctgacg ttcaatctgg
     1501 ttcagagcaa gctacgccgc ctgatcgacc gcaccagttt tgccatggct cagcaggatg
     1561 ttcgctatta cctcaatggc atgctgatcg aggtacagac tggtgtgctg cgtgcggtgg
     1621 ctaccgacgg gcaccgtctg gccatgtgcg ccatggaagc ggcaatcgaa aataccgagc
     1681 ggcatcaggt catcgtgccg cgcaagggaa tcctcgagct ggcccgtctg ctcaccgagc
     1741 aggacggcga agtcgccatc gtgctgggtg ccaaccacat ccgcgccact accggtgaat
     1801 tcaccttcac ctccaagctg gtcgacggca agttcccgga ctacgagcgc gtgctgccgc
     1861 ggggcggcga caagctggtg atcggtgatc gtcaggcgct gcgcgaggcc ttcagtcgta
     1921 ccgcgattct gtccaacgag aagtaccggg gcattcgcct gcaactggcc agtggtcagc
     1981 tgaagattca ggccaataac ccggaacagg aagaggccga ggaggaagtg gtggtcgact
     2041 ataacggcgg ctccctggag attggcttta acgtcagcta tttgctggat gtgctgggcg
     2101 tgatgaccac cgagcaggtg cgtctgatcc tgtcagacgc caacagcagc gccctggtgc
     2161 aggaagccgg caacgacgat tcttcttatg tcgtcatgcc gatgcgtctg taatcaccgc
     2221 tgaatgtctc tctcccgcgt caccgtcacc gcggtgcgaa acctgcaccc ggtgacgctc
     2281 tctccctccc cccgcatcaa tatccttcac ggcgctaacg gcagcggcaa gactagcctg
     2341 ctggaggcca ttcacctgct cggcctcgcc cgatcctttc gcagcaacaa gctgcagccc
     2401 atgattcagt acgaacagcc ggcctgtacc gtattcggtc aggtgctgcg tgaggaccgt
     2461 ttgcacagca atctcgggat atcccgtgac cgtcagggtg agctgcagat tcgcatcgat
     2521 gggcagagcg cacggagcac ggcgcagctc gccgaactgc tgccgctgca ggtgatcaac
     2581 ccggacagct tccgcttgct cgagggcgcg cccaaggtgc gtcggcagtt tctcgattgg
     2641 ggagtgttcc acgtggaacc acgctttctg ccggcctggc agcgcctgca gaaggccttg
     2701 cgtcagcgga actcgtggct gcggcatggt acactggatg ccgcgtcgca agcggcctgg
     2761 aaccgtgaat tgtgcctggc aagcgacgag ctggacggct atcggcggac gtatatccaa
     2821 gccctgaagc cggtgttcga gcaggtactg agcgaactgt tggacctgga gggactgacc
     2881 ctcagctatt accgcggatg ggacaaggac aagccgctgg ccgacgtgtt ggcgtctacc
     2941 ctaactcgcg atcagcagct cggtcatacc caggctgggc cacagcgggc ggatctgcgc
     3001 ttgcggttag gggggcacaa cgccgcagag atcttgtccc gtggccagca gaagctagta
     3061 gtttgcgcgc tgcgtatcgc tcaggggcat ctgctgaacg cggccaaaca aggccaatgc
     3121 atttatctgg tagacgattt gccgtcggag ctggatcaac gacatcgaca ggccctgtgc
     3181 cgcttgctag atgatttgca gtgtcaggtg ttcatcacct gtgtcgacca agaatatttg
     3241 aaggatggct ggcgcacgga aacgccggtc gccatgttcc acgtggaaca tggactgatc
     3301 accgcatcgg gagtgaacgc atgagcgacg agaacaacac gtacgactcc tcgagtatca
     3361 aggtactcaa aggtctggat gccgtacgca agcgcccggg catgtacatc ggcgacaccg
     3421 atgacggcac cggtctgcac cacatggtgt tcgaagtggt ggacaactcc atcgacgaag
     3481 cgctggccgg ctattgttcc gagatcagca tcaccatcca tcccgacgaa tccatcacag
     3541 tgcgtgacaa cggtcgcggc atcccggtgg acatgcacaa ggaagaaggc gtctcggccg
     3601 ccgaggtcat catgaccgtt cttcacgccg gcggtaagtt cgacgacaac agctacaagg
     3661 tgtccggcgg cttgcacggc gtgggcgttt ccgtggtgaa cgccctgtcc aaggagttga
     3721 tcctgaccat ccgccgcagc ggcaaggtgt gggagcagac ctatgtgcac ggtgtgcctc
     3781 aggctcccct ggctgccgtt ggcgacagcg aaggcaccgg tacgcagatc cacttcaagc
     3841 cgtccgaaga caccttcaag aacatccatt tcagctggga catcctggcc aagcgtctgc
     3901 gcgaactgtc gttcctcaac tccggcgtcg gcatcctgct gaaggacgaa cgcagtggca
     3961 aggaagagct gttcaagtat gagggtggcc tcaaggcctt cgttgagtac ctgaacacca
     4021 acaagaccat cgtcaaccag gtgtttcact tcaacatcca gcgcgacgaa gacggcgttg
     4081 gcgtggaagt ggcgctgcag tggaacgata gcttcaacga gaacattctc tgctttacca
     4141 acaacatccc gcagcgcgac ggcggcaccc acctggccgg cttccgctcc gccctcaccc
     4201 gccacctgaa taactacatc gagcaggaag gcctggcgaa gaagttcaag atcgccacca
     4261 ccggcgacga cgcccgtgaa ggtctgaccg cgatcatttc ggtgaaggtg ccggatccga
     4321 agttcagttc gcagaccaag gacaagctgg tctcctccga ggtgaagacc gcggtagagc
     4381 aggaaatggg caagtacttc gccgacttcc tgctggagaa cccgaacgaa gccaaggctg
     4441 tggtcggcaa gatgatcgat gccgcccgtg ctcgtgaggc cgcgcgcaag gctcgcg
//
LOCUS       DATIHC010000933         1558 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27643, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000933 DATIHC010000000
VERSION     DATIHC010000933.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1558
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27643"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..448
                     /locus_tag="VLF16_15470"
     CDS             <1..448
                     /locus_tag="VLF16_15470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HSX72331.1"
                     /translation="SSVGLLQVYGSGPLAMVGTPWILIGCYFTVALPFMYRAITNNLQ
                     AINLRDLMDAAHLLGASTWKAAFLVVLPNLRNGLMVSLFLSFSFLFGEFVFANLLVGT
                     RYETLQVYLNNMRNSSGHFNSALVISYFFFVLVFTWAATRLNKDKP"
     gene            493..1482
                     /locus_tag="VLF16_15475"
     CDS             493..1482
                     /locus_tag="VLF16_15475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSX72332.1"
                     /translation="MSYLSIRSLHKSYGDTSIFSDIHCEIERGEFVTLLGPSGCGKST
                     LLRCIAGLTEVDGGQILLDGQDLVPLAPQKRGIGMVFQSYALFPNMTVAQNVAFGLRM
                     QKVGKDESAQRVDEVLRLVELQDFAGRYPHQLSGGQCQRVALARSLVTRPRLLLLDEP
                     LSALDARIRKHLREQIRAIQQELGLTTVFVTHDQEEALTMSDRIFLMNTGKIVQSGDA
                     ESLYTAPVDAFAAGFIGNYNLLDADTASRLLLRPVNSRIAIRPEAIQLHDSGAIAAEV
                     LGHSLLGNVIRYRVQANGVELLVDVLNRSERDLIGKGQCIGLSIDADAIREVA"
     gene            1482..>1558
                     /locus_tag="VLF16_15480"
     CDS             1482..>1558
                     /locus_tag="VLF16_15480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008092904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IB family hydrolase"
                     /protein_id="HSX72333.1"
                     /translation="MALAIFDLDETLIHGDCASLWAQRMA"
BASE COUNT          260 a          559 c          473 g          266 t
ORIGIN      
        1 gtcctcggtg ggcctgctgc aggtttacgg ctccgggccg ctggcgatgg ttggcacgcc
       61 gtggatcctg atcggctgct acttcaccgt ggccctgccg ttcatgtacc gcgccatcac
      121 caacaacctg caggcgatca acctgcgcga cctgatggac gccgcccacc tgctcggcgc
      181 cagcacctgg aaggccgcct tcctggtggt gctgcccaac ctgcgcaacg gcctgatggt
      241 ctcgctattc ctctccttca gcttcctgtt cggcgagttc gtgttcgcca acctgctggt
      301 cggcacgcgc tacgagaccc tgcaggtgta cctgaacaac atgcgcaaca gcagcggcca
      361 cttcaacagc gcgctggtca tctcctactt cttcttcgta ctggtcttca cctgggcggc
      421 cacccgcctg aacaaggaca aaccgtaggc tgcgcgcgag cgcagcgagt cgaagcctac
      481 aaggacacct tcatgagtta cctgagcatt cgcagcctgc acaaaagcta cggcgacacg
      541 tcgatcttca gcgacatcca ctgcgagatc gagcgaggcg agttcgtcac cctgctcggc
      601 ccgtccggct gcggcaagtc caccctgctg cgctgcatcg ccggcctcac cgaggtagac
      661 ggcgggcaga ttctcctcga cggccaggac ctggtgccgc tggcgccgca gaagcgcggc
      721 atcggcatgg tgttccagag ctacgcgctg ttccccaaca tgaccgtggc gcagaacgtc
      781 gcctttggcc tgcgcatgca gaaggtcggc aaggacgaga gcgcccagcg cgtcgacgag
      841 gtgctgcgcc tggtggaact gcaggacttc gccgggcgct acccgcacca gctttccggc
      901 ggccagtgcc agcgcgtggc cctggcccgc tcgctggtca cccgcccgcg cctgctgctg
      961 ctcgacgagc cgctgtcggc gctggacgca cgcatccgca agcacctgcg cgagcagatc
     1021 cgcgccatcc agcaggagct gggcctgacc accgtcttcg tcacccacga tcaggaagag
     1081 gcgctgacca tgagcgaccg catcttcctg atgaacaccg gcaagatcgt ccagagcggc
     1141 gacgccgaat ccctctatac cgcgcctgtg gatgccttcg ccgcaggctt catcggcaac
     1201 tacaacctgc tcgacgccga caccgccagc cggctgctgc tgcgcccggt caacagtcgc
     1261 atcgccattc gccccgaggc gatccagctg cacgacagcg gcgccattgc cgccgaggtg
     1321 ctcggccaca gcctgctcgg caacgtcatc cgctaccggg tgcaggccaa tggcgtggag
     1381 ctgctggtgg acgtgctcaa ccgctccgag cgcgacctga tcggcaaggg ccagtgcatc
     1441 ggcctgtcca tcgatgccga cgcgatccgg gaggtggcgt gatggccctg gcgatcttcg
     1501 acctcgacga gaccctgatc cacggcgatt gcgcctcgct gtgggcccag cgcatggc
//
LOCUS       DATIHC010000934         3759 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_25231, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000934 DATIHC010000000
VERSION     DATIHC010000934.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3759)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3759)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3759
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25231"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..284)
                     /locus_tag="VLF16_15485"
     CDS             complement(<1..284)
                     /locus_tag="VLF16_15485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72334.1"
                     /translation="MQINGYSGNLPLSTQVINKYGPANPEQVNKAVDAASDRVDERQQ
                     SRELSQAGKRDAAAQIYSANTQQRQIETYLAVASDGEVDSQPSPLENAAEL"
     gene            complement(390..644)
                     /locus_tag="VLF16_15490"
     CDS             complement(390..644)
                     /locus_tag="VLF16_15490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003455651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72335.1"
                     /translation="MKPLKHLYIYFQDGQRLALRFPKQLEDPAAVARALRKQLESPFV
                     SIEVDGDLLMIPRESIKYLQVCPMPAALPELTIHGAEVID"
     gene            complement(677..1000)
                     /locus_tag="VLF16_15495"
     CDS             complement(677..1000)
                     /locus_tag="VLF16_15495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3392 domain-containing protein"
                     /protein_id="HSX72336.1"
                     /translation="MDLVLDLIATLSRWCRGNLYDISLAIMATLFVLFGPGINAWVQR
                     SIGGLNFVLRTLIFVLVCAVGYGLAIVFLTPWLAKGLGYFNNFTLSPVLLLVFFLIGV
                     LADRS"
     gene            complement(1135..2295)
                     /gene="hemW"
                     /locus_tag="VLF16_15500"
     CDS             complement(1135..2295)
                     /gene="hemW"
                     /locus_tag="VLF16_15500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HSX72337.1"
                     /translation="MNTSPGGGFQLPPLALYIHIPWCVRKCPYCDFNSHAAGPSLPEE
                     EYVDALLADLDADQAHTHGRELTSIFFGGGTPSLFSAKALGRLLEGVQRRVPFAGDIE
                     ITLEANPGTFEQAKFRDYRSLGINRLSIGVQSFQEAKLKALGRIHDGNEAIRAADMAR
                     AAGFDNFNLDLMHGLPEQSIEDALFDLRTAIAQGPTHLSWYQLTMEPNTVFWSQPPQL
                     PEDDLLWDIQEAGQALLAAEGYGQYEVSAYAQAGRAARHNLNYWTFGDFLGIGAGAHA
                     KLSAPDGRILRTWKTRLPKDYLDTNKAFQTGERVLGADELPFEFLMNVLRLTEGTPAA
                     LFEQRTGLPLTSLDAARREAEARQLLETDPTRLVATREGQLFLNDLLQHFLP"
     gene            complement(2292..2885)
                     /gene="rdgB"
                     /locus_tag="VLF16_15505"
     CDS             complement(2292..2885)
                     /gene="rdgB"
                     /locus_tag="VLF16_15505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014818739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HSX72338.1"
                     /translation="MPFKELVLASHNAGKLKELQAMLGEHVRVRSVGEFSSIEPEETG
                     LSFVENAILKARNAARVSGLPALADDSGLAVDFLGGAPGIYSARYADGQGDAANNAKL
                     LDALKDVADAERGAQFVCALALVRHADDPLPIICEGLWHGSILREARGAEGFGYDPLF
                     WVPERDCSSAELASDEKNRISHRARAMALLKQRLGLQ"
     gene            complement(2888..3307)
                     /locus_tag="VLF16_15510"
     CDS             complement(2888..3307)
                     /locus_tag="VLF16_15510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4426 domain-containing protein"
                     /protein_id="HSX72339.1"
                     /translation="MRRIASLIFCLLFALPALAERKQTFGELDVHYSTFNSSFLQPDV
                     AAAAGLTRSKTVGVLNVAVLKGGKGQPAKVDGTLKNLLGQTTPLQFRQVLESGAVYYL
                     AEFPLRQREVLTFSIDVQIGDGAPHTLTFNQEVFPDE"
     gene            complement(3323..>3759)
                     /gene="metW"
                     /locus_tag="VLF16_15515"
     CDS             complement(3323..>3759)
                     /gene="metW"
                     /locus_tag="VLF16_15515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003463948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methionine biosynthesis protein MetW"
                     /protein_id="HSX72340.1"
                     /translation="VIEQNLDEGLGNFADDSFDVVVMTQSLQALKYPDKVLAEMLRVG
                     KTCIITFPNFGHWRCRWYLTTKGRMPVSDFLPYTWYNTPNIHFCTFEDFERLCLEQGA
                     KVEERLAVDHEHRHNLGSRLWPNLLGEIGIYRISGSGLAPAV"
BASE COUNT          579 a         1156 c         1362 g          662 t
ORIGIN      
        1 agctcggcag cgttctccaa cgggctcggc tggctgtcga cttcgccatc gctggccacc
       61 gccaggtagg tctcgatctg ccgttgctga gtgttggcgc tgtagatctg cgcggcggcg
      121 tcgcgtttgc cggcctggct cagttcgcgg ctttgctggc gctcgtcgac tcggtcggat
      181 gcggcgtcca cggccttgtt cacctgttcg ggattggccg ggccgtactt gttgatgacc
      241 tgagtggaga gcggcagatt accgctgtac ccgttgatct gcatggcggt tcggtctcct
      301 gcggttgcct gaattcactc taatccggcg gtgctgcggc attagattga ttggcgatag
      361 ccgtctcgct gcgggtcggg ctgcagcgcc tagtcgatca cctcggcgcc gtggatggtc
      421 agctccggca acgcggcggg catcgggcag acctgcagat acttgatgct ttcccgcggg
      481 atcatcagca ggtcgccgtc cacctcgatg ctgacgaacg gcgactccag ctgcttgcgc
      541 agggcgcgcg ccaccgcagc cgggtcttcg agctgcttgg gaaagcgcag ggccaggcgc
      601 tggccatcct ggaaatatat gtagagatgc ttgagtggct tcatggggct cctccctggg
      661 cgccccgcgg gcgaccctag ctgcggtcgg ccagaacgcc gatcaggaag aagactagta
      721 gcaggacggg cgacagggtg aagttgttga agtagcccag ccccttggcc agccagggcg
      781 tgaggaagac gatggccagg ccgtagccga cggcgcagac cagcacgaag atcagcgtgc
      841 gcaggacgaa gttgaggccg ccgatggagc gctgcaccca ggcgttgatg cccggcccga
      901 acagcacgaa gagggtggcc atgatggcca gcgagatgtc gtacaggttg ccgcggcacc
      961 agcgcgagag ggtggcgatc aggtcgagca cgagatccat cgggtgtcct tgtcgtggtg
     1021 gttgggcgca gggagtgtac cgtctgccgt tccgctgtgg gagcgactgg ctggcattcc
     1081 gtttcaccgc gacgatggcg cgaagggcat cgcggccaag ggcgctcccc cgcgtcaggg
     1141 caggaagtgc tgcagcaggt cgttgaggaa cagctggccc tcgcgcgtgg cgaccagccg
     1201 cgtgggatcg gtctcgagca actggcgcgc ctcggcctcg cggcgcgccg catccaggct
     1261 ggtcagcggc aggccggtgc gctgctcgaa cagcgcggcc ggtgtgccct cggtcaggcg
     1321 cagcacgttc atcaggaact cgaagggcag ctcatcggcg cccagcaccc gctcgccggt
     1381 ctggaaggcc ttgttcgtgt ccagatagtc cttgggcagg cgggtcttcc aggtgcgcag
     1441 gatgcggccg tccggcgcgc tcagcttggc gtgggcgccg gcaccgatgc cgaggaagtc
     1501 gccgaaggtc cagtagttga ggttgtgccg cgccgcgcgc ccggcctggg cataggcaga
     1561 cacctcgtac tgcccatagc cctcggcggc cagcagggcc tggccggctt cctggatatc
     1621 ccacaacagg tcgtcctcgg gcagctgcgg cggctggctc cagaacaccg tgttcggctc
     1681 catggtcagc tggtaccagg acaggtgcgt cgggccctgg gcgatggcgg tgcgcagatc
     1741 gaacagggcg tcctcgatgc tctgctcggg caggccgtgc atcaggtcga ggttgaagtt
     1801 gtcgaagccg gcggcgcgtg ccatgtcggc ggcgcggatc gcctcgttgc catcgtgaat
     1861 gcggcccagg gccttgagct tggcctcctg gaaactctgc acgccgatcg acaggcgatt
     1921 gatgcccagg ctgcggtagt cgcggaactt ggcctgctcg aaggtgcccg ggttggcctc
     1981 cagggtgatc tcgatgtcgc cggcaaatgg cacgcggcgc tgcacgcctt ccagcagccg
     2041 gccgagggcc ttggccgaga acaggctggg cgtgccgcca ccgaagaaga tcgaagtcag
     2101 ctcacggccg tgggtgtgcg cctgatcggc gtcgagatcg gcgagcaggg cgtcgacgta
     2161 ctcctcttcc ggcaggctcg ggccggccgc gtgggagttg aagtcgcagt acgggcattt
     2221 gcgcacgcac cacgggatgt ggatgtacag cgcgagtggc ggcagctgga agccaccgcc
     2281 gggcgaggtg ttcattgcag acccaggcgc tgcttgagca gggccatggc gcgggcgcga
     2341 tggctgatgc ggttcttctc gtcgctggcc agttcggcgc tggagcagtc gcgctccggc
     2401 acccagaaca gcgggtcgta gccgaagccc tcggcaccgc gggcctcgcg caggatgctg
     2461 ccgtgccaca ggccctcgca gatgatcggc agcgggtcgt cggcgtggcg caccagggcc
     2521 agggcgcaga cgaactgggc gccgcgctcg gcgtccgcca cgtccttcag cgcatcgagc
     2581 agcttggcgt tgttggcggc atcgccctgg ccatcggcat agcgtgccga gtagatgccc
     2641 ggcgcgccgc cgaggaagtc caccgccagg ccggagtcgt cggccagtgc cggcaggccg
     2701 gacacgcggg cggcgttgcg cgccttgagg atggcgttct cgacgaagga caggccggtc
     2761 tcttccggct cgatgctgga gaactcgccc accgaacgca cgcgcacgtg ttcgccgagc
     2821 atggcctgga gttccttgag cttgccggcg ttatggctgg ccagtacgag ttctttgaag
     2881 ggcatggtca ttcgtccggg aacacttcct ggttgaaggt aagggtgtgc ggtgcgccgt
     2941 cgccgatctg cacgtcgatg ctgaaggtca gcacctcgcg ctggcgcagc gggaattcgg
     3001 ccaggtagta cacggcgccg ctctccagca cctgcctgaa ctgcaggggc gtggtctggc
     3061 cgagcaggtt cttcagggtg ccgtcgacct tggccggctg gcccttgccg cccttgagca
     3121 cggcgacgtt gagcacgccg acggtcttgc tgcgggtcag gccggcggct gcggccacat
     3181 ccggttgcag gaagctggag ttgaaggtgc tgtagtgcac gtccagctcg ccgaaggtct
     3241 gcttgcgctc ggcgagcgcg ggcagggcga agagcaggca gaagatgagc gatgcgatgc
     3301 ggcgcatgag agatcctcgg gattagacgg caggggccag gccggacccg ctgatgcgat
     3361 agatgccgat ctcacccaac aggttaggcc agagtcggct gcccaggttg tgccggtgct
     3421 cgtggtccac cgccaggcgc tcctccacct tcgcgccctg ttccaggcac aggcgctcga
     3481 agtcctcgaa ggtgcagaag tggatgttcg gcgtgttgta ccaggtgtag ggcaggaagt
     3541 ccgacaccgg catgcggccc ttggtggtca ggtaccagcg gcagcgccag tggccgaagt
     3601 tggggaaggt gatgatgcag gtcttgccga cccgcagcat ctccgccagg accttgtccg
     3661 ggtacttcag ggcctgcagc gactgggtca tcaccaccac gtcgaagctg tcgtcggcga
     3721 agttgcccag gccctcgtcg aggttctgct cgatgacgt
//
LOCUS       DATIHC010000935         5739 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27649, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000935 DATIHC010000000
VERSION     DATIHC010000935.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5739
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27649"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..713)
                     /locus_tag="VLF16_15520"
     CDS             complement(<1..713)
                     /locus_tag="VLF16_15520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007950495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72341.1"
                     /translation="MKRLLALGLAGAFVASAQAHEPGGIHSEKTAKVEAAFDLVHTRV
                     SKDGDMLVFEQLVDGKAGSRMPSPKGSFAGAEVYSYVWPTSLDAGSVGFEAGSGILAL
                     ALTSHPDFDDTPQLDENADGKKDNDGGLWHSHWVVLTKDATCGPSGLKVRDIPEGAKP
                     KLPPTWPGAPIYIDSPGYDLSVKDDAAQIRVPLKAVGFPETFNYDGVTAALQVNADLH
                     DPLLCVSSVWDVASGDLSLP"
     gene            complement(710..1273)
                     /locus_tag="VLF16_15525"
     CDS             complement(710..1273)
                     /locus_tag="VLF16_15525"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017517424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HSX72342.1"
                     /translation="MSKALIVVDIQNDYFPGGLWTLSKVEAAAAKAAQVIAAFRASGD
                     LVVHIRHEFTRQDAPFFRPGSEGAQLHPSVINQPGEPVVLKHYINSFRETELKQVLDD
                     AGVDEVVVVGNMSHMCVDGITRAAVDFGYRTTVLHDACATLDLEFDGVKVPAAHVHAA
                     FMAALSFGYAPVISTAEYLGQHTRNAA"
     gene            complement(1321..2145)
                     /locus_tag="VLF16_15530"
     CDS             complement(1321..2145)
                     /locus_tag="VLF16_15530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016703074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSX72343.1"
                     /translation="MATITTRDGVEIYYKDWGSGQPILFSHGWPLNGDSWESQMLFLA
                     DHGYRVIAHDRRGHGRSSQPWHGNDMDHYADDLAELIEVLDLRDLVLFGFSTGGGEVA
                     RYIGRHGTDRVAKAGLISAVPPLMLKTESNPDGLPIEVFDGIRAGSVADRSQLYKDIA
                     SGPFYGYNRPGAKPSQGIIDAFWMQGMMAGHKSAYDCIAAFSATDFRDDLKKFDVPTL
                     VLHGDDDQIVPIGAAALASAKLITDAKLVVYPGAPHGLADTHKDQLNADLLAFLRS"
     gene            complement(2174..2680)
                     /locus_tag="VLF16_15535"
     CDS             complement(2174..2680)
                     /locus_tag="VLF16_15535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017518035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72344.1"
                     /translation="MATPLSTLGIVHTAISLAPVLIGLYAFLRLGRIPPRGALGEAYW
                     YGMLGSVVSAFGLSSTGGFNSGHAIGLLALAVILLGRQSLQLQRLGQLRPYLETACMS
                     FSFLLLMIPGLNESLSRLPPSAPIGNGPDSPEVKLALLVALLLFLVGLGYQCQRLRAR
                     HAGLAQPQ"
     gene            2999..3634
                     /locus_tag="VLF16_15540"
     CDS             2999..3634
                     /locus_tag="VLF16_15540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018613367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSX72345.1"
                     /translation="MREEAGLVHIVDDDTSLRTALDSLFRSVGMSTRQYGSAQEFLDA
                     EHPEQASCLVLDVRLPGRSGLDFQAQLLELKNPIPVVFMTGHGDISMSVRSMKAGAVD
                     FLTKPFRDQDMLDAVAAALDKDRLRRTQQRDADGVHERFSSLSPRERQVMALVTTGRL
                     NKQVAAELGLSEITVKIHRGHAMQKMQARSLAELVKMAGVLQLERDGTLRT"
     gene            3729..4097
                     /locus_tag="VLF16_15545"
     CDS             3729..4097
                     /locus_tag="VLF16_15545"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX72346.1"
                     /translation="MSDSPLISIIDDDESVRLATASLLRSEGYRTELFASAEDFLASD
                     AARFACVVSDIQMAGMSGIDLTGQLLADDAEARIILMTARTEEDLHQRAGASGAVCLL
                     NKPFAAEQLLNCVERALTRG"
     gene            4230..5282
                     /locus_tag="VLF16_15550"
     CDS             4230..5282
                     /locus_tag="VLF16_15550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016494244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HSX72347.1"
                     /translation="MRYTTFGRRCGLRVSELALGTGNFGTGWGHGAVRDEARKIFDGY
                     VEAGGNFFDAANGYQAGQAEVLLGEFLGSQRDDFVVATKYSLGTAPGAGIAHTGNNRK
                     NLVRAVEESLKRLNTDHLDLLWAHITDGMTPMDEILRGFDDLVSAGKIHYAGLSNFPA
                     WRIARADLLAELRGWAPLVGIQLEYSLAERSADRELLPMAEALGLAVTQWSPLGGGFL
                     TGKYRAGNDDSRATKLGMLVHGEKSTRETAILDALLGVAEEQDSSATRVAIAWLLHKA
                     RRSSTALIPILGSRTREQFDATLGALQLSLSDEQFARLDAASAIALGVPHEQAEQMRE
                     PLSGGRDLHWPRVPVV"
     gene            complement(5290..>5739)
                     /locus_tag="VLF16_15555"
     CDS             complement(5290..>5739)
                     /locus_tag="VLF16_15555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSX72348.1"
                     /translation="GWEKVMQLNVTAVFSCIQQLLPLLRKAGSEASPARVINIGSVAG
                     ISSFGEQAYAYGPSKAALHQLSRLLARELVSEHINVNVIAPGRFPSKMTRHIAGDEAA
                     MAEDVAQIPMRRWGREEEMSALAISLCSAAGAYMTGAIIPIDGGFSL"
BASE COUNT          877 a         1898 c         2059 g          905 t
ORIGIN      
        1 ggcagcgaca ggtcgccgga ggccacgtcc cacacgctgg agacgcacag cagcgggtcg
       61 tgcaggtcgg cgttgacctg cagggcggcg gtcacgccgt cgtagttgaa ggtctcggga
      121 aaacccacgg ccttcagcgg cacgcggatc tgcgcggcgt cgtccttcac gctcaggtcg
      181 tagccgggcg agtcgatgta gatcggcgcg ccgggccagg tcggcggcag tttgggcttg
      241 gcgccctcgg ggatgtcgcg caccttgagg ccggacgggc cgcaggttgc atccttggtc
      301 agcaccaccc agtgcgagtg ccagaggccg ccgtcgttgt ccttcttgcc gtcggcgttc
      361 tcgtccagct gcggggtgtc gtcgaagtcg gggtgcgagg tcagggccag ggcgaggatg
      421 cccgagcccg cctcgaagcc gacgctgccg gcgtccaggc tggtcggcca gacgtagctg
      481 tacacctcgg cgccggcgaa gctgcccttg ggcgagggca tgcggctgcc ggccttgccg
      541 tcgaccagct gctcgaacac cagcatgtcg ccgtccttgg acacccgggt gtgcaccagg
      601 tcgaaggctg cctcgacctt ggcggtcttc tcgctgtgga tgccgcccgg ttcgtgggcc
      661 tgcgccgagg cgacgaacgc gccggccagg ccgagtgcga ggaggcgctt catgcggcgt
      721 tcctcgtgtg ctggccgagg tactcggcgg tggagatcac cggcgcgtag ccgaagctca
      781 gcgccgccat gaaggccgcg tgcacgtggg ccgccggcac cttcaccccg tcgaactcca
      841 ggtcgagggt ggcgcaggca tcgtgcagca ccgtggtgcg gtagccgaag tccaccgccg
      901 cgcgggtaat gccgtccacg cacatgtggc tcatgttgcc gaccaccacc acctcgtcca
      961 cgccggcgtc gtcgagcacc tgcttcagct cggtctcgcg gaacgagttg atgtagtgct
     1021 tcagcaccac cggctcgccg ggctggttga tcacgctggg atggagctgc gcaccttcgc
     1081 tgccggggcg gaagaagggc gcgtcctggc gggtgaattc atggcggatg tgcaccacca
     1141 ggtcaccgct ggcgcggaat gccgcgatca cctgggcggc cttggcggcg gccgcctcca
     1201 ccttgctcag ggtccacagg ccaccgggga agtagtcgtt ctggatgtcc accacgatca
     1261 gtgccttgct catctcgtct ctccttgttc gcggagcccg ccggcggcgg gcgagtggga
     1321 tcagctgcgc aggaaggcca gcaggtcggc gttgagctgg tccttgtggg tatcggccag
     1381 gccgtggggc gcgccggggt agaccaccag cttggcgtcg gtgatgagct tggccgaggc
     1441 cagggcggcg gcgccgatgg gcacgatctg gtcgtcgtcg ccgtgcagca ccagggtggg
     1501 cacgtcgaac ttcttcaggt cgtctcggaa gtcggtggcg gagaaggcgg cgatgcagtc
     1561 gtaggcgctc ttgtggccgg ccatcatgcc ctgcatccag aaggcgtcga tgatgccctg
     1621 ggacggcttg gcgcccgggc ggttgtagcc gtagaagggg ccgctggcga tgtccttgta
     1681 cagctgcgaa cggtcggcga cggagccggc gcggatgccg tcgaacacct cgatgggcag
     1741 gccgtcgggg ttgctctcgg tcttcagcat cagcggcggc acggccgaga tcagcccggc
     1801 cttggccacc cggtcggtac cgtggcggcc gatgtagcgc gccacttcgc cgccgccggt
     1861 ggagaagccg aacagcacca ggtcgcgcag gtcgaggacc tcgatcagct cggccaggtc
     1921 gtcggcgtag tggtccatgt cgttgccgtg ccagggctgg ctggagcggc cgtggccgcg
     1981 gcggtcgtgg gcgatcaccc ggtagccgtg gtcggcgagg aacagcatct gcgattccca
     2041 gctgtcgccg ttcaacggcc agccgtggct gaacaggatg ggctgaccgc tgccccagtc
     2101 cttgtagtag atctcgacgc cgtcgcgggt agtgatggtg gccatgcgaa gtgctccttt
     2161 tctgttttgg gtactactgc ggttgggcca gcccggcgtg ccgcgcgcgc aggcgctggc
     2221 actggtagcc gaggccgacc aggaagagga gcagcgcgac caggagggcc agcttcacct
     2281 cgggggaatc ggggccgttg ccgatgggcg cagacggcgg caggcgcgac agggattcgt
     2341 tgagccccgg aatcatcagc agcaggaagc tgaagctcat gcaggccgtt tccaggtacg
     2401 ggcgcagctg gccgaggcgc tgaagttgca ggctctggcg gccgagcagg atgaccgcga
     2461 gggccagcag gccgatggcg tggccgctgt tgaagccgcc cgtgctggac agaccgaagg
     2521 cgctcaccac cgagccgagc atgccgtacc agtaggcctc gcccagggcg ccgcgcggcg
     2581 gaatgcggcc gaggcggagg aaggcgtaga ggccgatcag caccggcgcc aggctgatgg
     2641 cggtgtggac gatgcccagg gtggagaggg gagtggccat ggtgtcgtac ctccagcaga
     2701 tggaaccgcg tggggcgtcg ccgtctgcct ggggctactg cacggtgtgc cgtccggggt
     2761 cgcactgccg acccgtgctg ccgactatgg gcggccggcg ccggggcgac cattctacga
     2821 aggggcgtgc ggcgccatat ctaggtatga ggtcgccacc cacatgcagg gcccgaccca
     2881 gacgccgcgc ggcggaggcg cctatacctt ggtatgggtg ccccgagcgc tgggtcgggg
     2941 tagggtgccg ggctacgact agactgtggg gctgggaatg tcgggcgagg aaggcgtaat
     3001 gcgggaagag gcgggactgg ttcatatcgt cgacgacgac acatccctgc gtacggcact
     3061 agacagtttg ttccgctcgg tcggcatgag cacacggcag tacggctcgg cccaggaatt
     3121 cctcgacgcc gagcaccccg agcaggcgtc ctgcctggtg ctcgacgtgc gcctgcccgg
     3181 gcgcagcggg ctggacttcc aggcccagct gctggagctg aagaatccca tcccggtggt
     3241 gttcatgacc ggccacggcg acatctccat gtcggtgcgc agcatgaagg ccggcgccgt
     3301 cgacttcctg accaagccgt tccgcgacca ggacatgctc gacgcggtcg ccgccgccct
     3361 cgacaaggat cgcctgcgcc gcacccagca gcgcgacgcc gacggcgtgc acgaacgctt
     3421 ctccagcctc agcccgcgcg agcgtcaggt gatggccctg gtcaccaccg ggcggctgaa
     3481 caagcaggtg gccgcggagc tgggcctgag cgaaatcacc gtgaagatcc accgcggcca
     3541 tgccatgcag aagatgcagg cgcgctccct cgcggagctg gtgaagatgg ccggcgtgct
     3601 gcagctcgaa cgcgatggca cgttgcgcac atgaacctcc gtatgatgtt caagtctctt
     3661 tcttcgcgcc aagctgcatt cgactgacac gcgaccgtcc gccgcgtagg cctgccgagg
     3721 atgagccagt gtccgattcc ccgctgattt ccatcatcga cgacgacgag tcggtgcgcc
     3781 tggccaccgc cagcctgctg cgctcggaag gttatcgcac cgagctgttc gccagcgccg
     3841 aggatttcct ggccagcgac gccgcgcgct tcgcctgcgt ggtcagcgat atccagatgg
     3901 ccggcatgag cggcatcgac ctcaccggcc agctgctggc cgacgacgcc gaggcgcgca
     3961 tcatcctgat gaccgcgcgc accgaggaag acctgcacca gcgtgctggc gccagtggcg
     4021 ccgtctgcct gctgaacaag cccttcgccg ccgagcaact gctgaactgc gtggagcgcg
     4081 cgctgacccg cggctgacct ataccaatgc atgagccggc tgaaccgcgg tctgatggcg
     4141 ccggcggcgg tgtggcgcga cgatctcctt cccaccgagg ccgccaccgt gctggcggct
     4201 cggacccgcg tccttcaagg agaatcgcca tgcgctacac caccttcggc cgccgctgcg
     4261 gcctgcgtgt ttccgaactg gctctgggta ccggcaactt cggtaccggc tggggccatg
     4321 gcgccgtgcg cgacgaggcg cggaagatct tcgacggcta cgtcgaggcc ggcggcaact
     4381 tcttcgacgc cgccaatggc taccaggccg gccaggccga ggtgctgctc ggcgaattcc
     4441 tcggcagcca gcgcgacgat ttcgtggtgg cgaccaagta cagcctcggc accgcgcccg
     4501 gcgccggcat cgcccacacc ggcaacaacc gcaagaacct ggtgcgcgcg gtggaggaga
     4561 gcctcaagcg gctcaacacc gatcacctgg acctgctgtg ggcgcacatc accgacggca
     4621 tgacgccgat ggacgagatt ctgcgcggct tcgacgacct ggtcagcgcc ggcaagatcc
     4681 actacgccgg gctgtccaac ttcccggcct ggcgcatcgc ccgcgccgac ctgctggccg
     4741 agctgcgcgg ctgggcgccg ctggtgggca tccagctgga gtacagcctg gccgagcgca
     4801 gcgccgaccg cgagctgctg ccgatggccg aggcgctggg cctggccgtt acccagtggt
     4861 cgccgctggg cggcggcttc ctcaccggca agtaccgcgc cggcaacgac gacagccgcg
     4921 cgaccaagct gggcatgctg gtgcacggcg aaaagagcac ccgcgagacc gccattctcg
     4981 atgcattgct gggcgtggcc gaggagcagg acagcagcgc cacgcgggtg gccatcgcct
     5041 ggctgctgca caaggcgcgg cgctccagca ccgcgctgat cccgatcctc ggctcacgca
     5101 cccgcgagca gttcgatgcc accctgggcg cgttgcagct gagcctgagc gacgagcagt
     5161 tcgcccgcct ggacgccgcc agcgccatcg cgctgggcgt gccgcacgag caggcggagc
     5221 agatgcgcga gccgctgtcc ggcgggcgtg acttgcactg gccgcgggtg ccggtggtct
     5281 gagcgatgac tagaggctga agccgccgtc gatggggatg atggcgccgg tcatgtaggc
     5341 gccggccgcg ctgcacaggc tgatggccag ggccgacatc tcctcctcac ggccccagcg
     5401 gcgcatcgga atctgcgcca cgtcctcggc catggccgcc tcgtcgccgg cgatgtggcg
     5461 ggtcatcttg ctggggaaac gtccgggggc gatcacgttg acgttgatgt gttcgctcac
     5521 cagctcgcgc gccagcaggc gcgacagctg gtgcagcgcc gccttgctcg ggccgtaggc
     5581 gtaggcctgc tcgccgaacg agctgatgcc ggccaccgaa ccgatgttga tcacccgcgc
     5641 cgggctggcc tcgctacctg ccttgcgcag cagcggcagc agttgctgga tgcagctgaa
     5701 tacggcggtg acgttgagct gcatgacctt ctcccagcc
//
LOCUS       DATIHC010000936         2194 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_25238, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000936 DATIHC010000000
VERSION     DATIHC010000936.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2194)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2194
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25238"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1012
                     /locus_tag="VLF16_15560"
     CDS             <1..1012
                     /locus_tag="VLF16_15560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HSX72349.1"
                     /translation="ASVEYIMRDVEFGWIIRYLHSTGASAFFVVVYLHMFRGLLYGSY
                     QKPRELVWIFGMLIYLCLMAEAFMGYLLPWGQMSYWGAQVIISLFGAIPVIGDDLTQW
                     IRGDYLISGITLNRFFALHVIALPIVLLGLVVLHILALHEVGSNNPDGVDIKKHKDEN
                     GVPLDGIAFHPYYTVKDIVGVVVFLFVFCAVVFFFPEMGGYFLEKPNFEQANPFKTPE
                     HIAPVWYFTPFYAILRAVPDKLLGVIAMGAAIAILFVLPWLDRSPVKSMRYKGWMSKI
                     WLVVFCISFVILGVLGVLAPTPGRTLLSQICTALYFAYFILMPFYTRMEKTKPVPERV
                     TG"
     gene            1012..1794
                     /locus_tag="VLF16_15565"
     CDS             1012..1794
                     /locus_tag="VLF16_15565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c1"
                     /protein_id="HSX72350.1"
                     /translation="MKKLFAAFVLAALPAFTFAAGGHGVELDKVDIDLTDKAALQDGA
                     RTFANYCMGCHGAKFQRYERVADDIGIPHELMLENLVFTGAKIGDHMKIGMKPEDAKS
                     WFGAAPPDLTLVARVRGTDWLYTYLRTFYEDPTRPLGSNNKVFPNVGMPNVLVGLQGR
                     QVVGCKQVQVVENGKKQYDPLTGAPITHEACDQLTIMPKTGTLTEAEFDEKVHNLVTF
                     LAYSANPVKLESQRIGTYVLLYLAFFFVFAYLLKREYWKDVH"
     gene            1885..>2194
                     /locus_tag="VLF16_15570"
     CDS             1885..>2194
                     /locus_tag="VLF16_15570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HSX72351.1"
                     /translation="MAATNKLACYSDPADHYCHRVRLVLAVKGVSAEIIDVQAGRCPP
                     KLAEANPYGGVPTLVDRDLALYESTVVMEYLDERYPHPPLLPVYPVDRAKSRLLMHRI
                     Q"
BASE COUNT          372 a          721 c          648 g          453 t
ORIGIN      
        1 cgcttccgtc gagtacatca tgcgcgacgt ggagttcggc tggatcatcc gctacctgca
       61 ctccactggt gcctccgcgt tcttcgtggt ggtctacctg cacatgttcc gcggcctgct
      121 ctacggctcc taccagaagc cgcgcgagct ggtgtggatc ttcggcatgc tgatctacct
      181 gtgcctgatg gccgaagcct tcatgggcta tctgctgccg tggggccaga tgtcctactg
      241 gggcgcccag gtgatcatct cgctgttcgg tgccatcccg gtgatcggcg acgacctgac
      301 ccagtggatc cgcggtgact acctgatctc cggtatcacc ctgaaccgct tcttcgccct
      361 gcacgtgatc gccctgccga tcgtcctgct cggcctggtc gtgctgcaca ttctggcgct
      421 gcacgaagtc ggctcgaaca acccggacgg cgtggacatc aagaagcaca aggacgagaa
      481 cggcgtaccg ctggacggca tcgccttcca cccgtactac accgtgaagg acatcgtcgg
      541 tgtcgtggtc ttcctgttcg tcttctgcgc cgtggtgttc ttcttcccgg agatgggcgg
      601 ctacttcctc gagaagccga acttcgagca ggccaacccg ttcaagaccc ccgagcacat
      661 cgctccggtg tggtacttca ctcccttcta cgccatcctg cgcgccgtgc cggacaagct
      721 gctgggtgtg atcgccatgg gcgctgccat cgccatcctg ttcgtcctgc cgtggctcga
      781 ccgtagcccg gtcaagtcca tgcgctacaa gggctggatg agcaagatct ggctggtggt
      841 gttctgcatc tccttcgtga tccttggcgt gctgggcgtg ctggcgccga ctccgggtcg
      901 taccctgctg tcgcagatct gcaccgcgct gtatttcgcc tacttcatcc tgatgccgtt
      961 ctacacccgg atggagaaga ctaaaccggt tccggaaagg gtgactggct gatgaagaag
     1021 ctatttgctg catttgtact ggccgctctg ccggccttca ccttcgctgc cggtggccat
     1081 ggcgtcgagc tggacaaggt cgacatcgac ctgaccgaca aggccgccct gcaggatggt
     1141 gcgcgcacct tcgccaacta ctgcatgggc tgccacggcg ccaagttcca gcgttacgag
     1201 cgcgtggccg acgacatcgg catcccgcac gagctgatgc tggagaacct ggtgttcacc
     1261 ggtgccaaga tcggcgacca catgaagatc ggcatgaagc cggaagatgc caagtcctgg
     1321 ttcggtgccg ctccgcccga cctgaccctg gtcgcccgcg tgcgtggcac cgactggctg
     1381 tatacctacc tgcgcacctt ctacgaggac ccgacccgtc cgctgggctc caacaacaag
     1441 gtgttcccga acgtgggcat gcccaacgtg ctggtcggcc tgcagggtcg ccaggtcgtt
     1501 ggttgcaagc aggttcaggt ggtcgagaac ggcaagaagc agtacgaccc gctgaccggc
     1561 gcgccgatca cccacgaagc ctgtgatcag ctgaccatca tgccgaagac cggcacgctg
     1621 accgaggcgg agttcgacga gaaggtacac aacctggtga ccttcctcgc ctactcggcc
     1681 aacccggtca agctggaaag ccagcgcatc ggtacctacg tgctgctgta cctggccttc
     1741 ttcttcgtgt tcgcctatct gctgaagcgc gaatactgga aggacgtcca ctgatacatc
     1801 gcgttaccgc tgtagacgca cgcgcccctc aagggcgcgt gcgtctttct gtttctgcca
     1861 tatcgaaaac ccaggagggg cgccatggcc gcgaccaata agctggcctg ctattccgac
     1921 cctgccgatc actattgtca ccgtgtgcga ctggtgctgg ccgtgaaagg cgtcagcgcc
     1981 gagatcatcg atgttcaggc cgggcgctgc ccgcccaagc tggccgaggc caatccctat
     2041 ggcggcgtac cgaccctggt cgatcgcgac ctggctctgt acgagtccac cgtggtgatg
     2101 gagtatctcg acgagcgcta cccccatccg ccgctgttgc cggtgtatcc ggtggaccgc
     2161 gccaagagcc gcctgctgat gcaccgcatc cagc
//
LOCUS       DATIHC010000937         2388 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_22860, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000937 DATIHC010000000
VERSION     DATIHC010000937.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2388)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2388)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2388
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22860"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..246
                     /locus_tag="VLF16_15575"
     CDS             <1..246
                     /locus_tag="VLF16_15575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HSX72352.1"
                     /translation="YLASAYEGEELQMATWIVESDHKLKMTRHFQLWRASDACTLLRA
                     RTTFVCIELSTGKPKRMPSEFIEGYGQAVLEPYPLEL"
     gene            complement(243..638)
                     /locus_tag="VLF16_15580"
     CDS             complement(243..638)
                     /locus_tag="VLF16_15580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003243613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72353.1"
                     /translation="MPRHSLLALCLMSALAQAADTLPPGVHVQPPEPAPGEPGRLILS
                     RDNNAPNACDVELYVNREVAATLGPGGRAALDLPSGELSLAVAISSAGYCGGRGPGPS
                     QSVLLGPGETRQFAIMVEPGQVFLAPLLD"
     gene            732..1700
                     /locus_tag="VLF16_15585"
     CDS             732..1700
                     /locus_tag="VLF16_15585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HSX72354.1"
                     /translation="MQIALAPMEGLVDEILRDVLTRVGGIDWCVTEFIRVSDRLLPEA
                     AYRKLAPELGDGARTRAGTPMRVQLLGSDPACLADNAAFACTLGAPVIDLNFGCPAKT
                     VNKSRGGAVLLKEPELLHAIVREVRRAVPAQIPVTAKMRLGFDSPDGALDCACALAEG
                     GAAQLVVHARTKVDGYKPPAHWEWVARVQEVVRVPVYANGEIWTVDDWRRCREVSGAE
                     DIMLGRGLVSRPDLARQIAAARAGREVAPMSWDELLPLLQDFWLQARRKLAPRYAPGR
                     LKQWLAMLTRSYPEAVALFAELRRENDCQRIDRLLGAPEATLAETA"
     gene            complement(1711..>2388)
                     /locus_tag="VLF16_15590"
     CDS             complement(1711..>2388)
                     /locus_tag="VLF16_15590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013982513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSX72355.1"
                     /translation="RQGYDLLLSYRQQAATAEALVAEIAAVGGNAYAVQADVDSEEDV
                     LRLFAELDARYGRLDALVNNAGMLERQMRLEQMDVARWQRVLNTNVIGTFLCCREAIG
                     RMSSRRGGHGGAIVNVSSMAARLGSPGEYIDYAAAKGAVDSLTLGLAREVAGNGIRVN
                     AVRPGLIDTDIHAAGGEPGRIERLKGSVPLQRGGTPEEVAEAILWLASEQSSYCTGTF
                     IDVSGGR"
BASE COUNT          335 a          841 c          834 g          378 t
ORIGIN      
        1 tacctggcca gcgcctacga aggcgaggaa ttgcagatgg ccacctggat cgtcgaatcc
       61 gatcacaagc tgaagatgac gcgtcatttc cagctgtggc gcgcctctga cgcctgcacg
      121 ctgctgcgtg cgcgtaccac cttcgtctgc atcgagctgt ccaccggcaa gcctaagcgt
      181 atgccgtcgg aattcatcga gggctacggc caggcggttc tcgagcccta tccgctggag
      241 ctctagtcga gcagtggggc gaggaacacc tggcccggct cgaccatgat cgcgaattgc
      301 cgcgtctcgc ccgggccgag cagcaccgac tgtgacggcc ccgggccgcg gccaccgcaa
      361 tagcccgccg aggaaatcgc caccgccagg ctcagctccc cgctgggcag gtccagcgcg
      421 gcgcgcccgc cggggccgag ggtcgccgcc acctcgcggt tcacgtagag ctccacgtca
      481 caggcattcg gcgcgttgtt gtcgcggctt aagatcaacc gtcccggctc gcccggtgcc
      541 ggctccggtg gctgcacgtg cacgcccggc ggcagtgtat cggcggcctg ggcgagggcg
      601 ctcatcaggc agagggcgag tagcgagtgg cgtggcatgg cgatctcccg ttcggctgct
      661 tgtagtgtgg accaccttgc gcggcgcgag tgtcggctta aactgtgcgc cccgtttttc
      721 cggaccttct catgcaaatc gccctggccc ccatggaggg gctggtcgac gagatcctgc
      781 gcgatgtgct gacccgtgtc ggcggcatcg actggtgcgt caccgagttc atccgcgtca
      841 gcgaccgcct gttgcccgag gccgcctacc gcaagctcgc ccccgagttg ggcgatggcg
      901 cgcgcacccg cgccggcacg ccaatgcgtg tgcagctgct cggctccgac cccgcttgcc
      961 tggcggacaa cgcggccttt gcctgcacgt tgggcgcgcc ggtgatcgac ctcaatttcg
     1021 gctgtccggc caagacggtg aacaagtcgc gcggcggcgc cgtgctgctc aaggagccgg
     1081 agctgctgca tgccatcgtc cgcgaggtgc gccgcgccgt gccggcgcag attccggtga
     1141 ccgccaagat gcggctgggc ttcgacagcc cggacggcgc gctggactgc gcctgcgccc
     1201 tggccgaggg cggcgccgcc cagctggtgg tgcacgcccg caccaaggtc gacggctaca
     1261 agccgccagc ccactgggag tgggtggcgc gggtgcagga agtcgttagg gtgccggtat
     1321 acgccaatgg cgagatctgg acggtcgatg actggcgccg ctgtcgcgaa gtcagcggcg
     1381 ccgaggacat catgctcggc cgcggtctgg tctcgcgccc ggacctggcc cggcagatcg
     1441 ccgccgcccg cgccggtcgg gaggtcgcgc cgatgagctg ggacgagctg ctgccgctgc
     1501 tccaggactt ctggctgcag gctcggcgca agctggcgcc gcgctacgcc cctgggcggc
     1561 tcaagcagtg gctggcgatg ctcacccgca gctatcccga ggccgtcgcg ctgttcgccg
     1621 agctgcgccg ggagaacgac tgccagcgca tcgaccggct gctcggtgcg cccgaggcga
     1681 ccctggccga aacggcctga cgggtcgtca tcagcgtccg ccgctgacgt cgatgaaggt
     1741 gccggtgcag taggacgact gctccgaggc cagccacaga atcgcctcgg ccacttcctc
     1801 gggcgtgccg ccacgctgca acggcacgct gcccttgagc cgctcgatgc gacccggctc
     1861 gccgccggcc gcgtggatgt cggtatcgat cagcccgggg cgcacggcat tgacgcggat
     1921 gccgttgccg gcgacttcgc gggccaggcc gagggtcagg ctgtcgacgg cacccttggc
     1981 cgccgcgtag tcgatgtatt cgcccggcga gccgaggcgc gcggccatcg acgagacgtt
     2041 gacgatggcg ccgccatggc cgccgcggcg gctggacatg cgcccgatcg cctctcggca
     2101 gcagaggaag gtgccgatca cgttggtgtt cagcacccgc tgccagcgcg ccacgtccat
     2161 ctgctccagg cgcatctgcc tctccagcat gccggcgttg ttcaccagcg cgtcgaggcg
     2221 gccgtagcgt gcgtccagct cggcgaacag gcgcagcacg tcctcctcgc tgtcgacgtc
     2281 cgcctgtacc gcgtaggcgt tgccgccgac ggcggcgatc tcggcgacca gcgcctcggc
     2341 ggtcgcggcc tgttggcggt agctcagcag caggtcataa ccctggcg
//
LOCUS       DATIHC010000938         4117 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2128, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000938 DATIHC010000000
VERSION     DATIHC010000938.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4117
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2128"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..713)
                     /locus_tag="VLF16_15595"
     CDS             complement(<1..713)
                     /locus_tag="VLF16_15595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015637283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HSX72356.1"
                     /translation="MRSTTIRRWSVVHTWTSLVCTLFLFLLALTGLPLIFHHEIEHLL
                     GEAPELREMAPDAPRLDLQQIVEAGERHRPGEVVQYLGWEEDEPNGVVTIMAATAGTE
                     PNSSHTFMLDARSGEAVEMPAANGGFMMLMLRLHVDMFAGLPGKLLLASMGILFVVAI
                     VSGVVLYSPFMRRLDFGTVRQHKSTRLRWLDLHNLIGIVTLVWALTVGLTGVISACAD
                     LLISTWRNDTLAAMVAPYR"
     gene            complement(816..1511)
                     /locus_tag="VLF16_15600"
     CDS             complement(816..1511)
                     /locus_tag="VLF16_15600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003177633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HSX72357.1"
                     /translation="MKKLLARFRPARPAVDPRSLRLPAAQPLDERPLSRQRMVVVDLE
                     TSGLDLQRDQLLAIGAVVIEDGAIDFSQQFECTLCQPGHRAGASTLIHGIAPSAVAAG
                     RAPDEALLAFMAFVDDSPLLAFHAPFDQHMLERALREELGYRLHHPFLDVAVLAPLLC
                     PEAPPYRGLDEWLGHFRLQASERHHASADALATAELALILFSKARRQGLDNLAELQRH
                     AQAWRRRQLSPSL"
     gene            complement(1576..3495)
                     /locus_tag="VLF16_15605"
     CDS             complement(1576..3495)
                     /locus_tag="VLF16_15605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative nucleotidyltransferase substrate
                     binding domain-containing protein"
                     /protein_id="HSX72358.1"
                     /translation="MSSSAAGKTAVLQNIHGTMEFLRKYPPFNQMDSAQLAYLVEHCQ
                     LRFYAAGESIIKPSDGPVQHFHIVKQGQVVGERPHSARRGSETTFEIASGECFPLAAL
                     LGERATRTEHLAGEDTFCLLLGKDAFVRLFAQSAPFRDFALRGVSSLLDQVNQQVQLR
                     AAENLGAQYSLDTTLRELALQQPVACAADTPLRDAVRRMHEQHVGSIVIVDAAERPHG
                     IFTLRDLRRVVAAGESLEQPISALMTQRPFHLPPDASAFDAALAMTERHIAHVCLVEH
                     ERLVGVVSERDLFSLQRVDLVHLARTIRHAGRLETLVALRSDIRLLVERMLAHGASST
                     QITQLVTLLNDHTVCRVIELVLEELGDPGVPFSWLCFGSEGRREQTLHTDQDNGILFE
                     AADAAEAERIRQRLLPYARRINQLLAECGFALCRGNIMAGNPELCLSRREWTRRFSAF
                     VREATPESLLGSSIYFDLRVVWGDERGCAQLRRQLLAEVGDNSLFQRLLAANALRHRP
                     PLGRFRDFVVARKGAEKDTLDLKEEGLTPFVDGARLLALAHGVADSNTLRRFAELVRL
                     RVIDAQDGAAYEEAYHFIQQTRLQLHQQQAAQGLPLTNRLDPDSLNHLDRRILRESFR
                     QAQRLQASLALRYQL"
     gene            complement(3561..>4117)
                     /locus_tag="VLF16_15610"
     CDS             complement(3561..>4117)
                     /locus_tag="VLF16_15610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015477311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YbfB/YjiJ family MFS transporter"
                     /protein_id="HSX72359.1"
                     /translation="APPERALPAARLVTLYGLAGFGYIVTATSLPVLLRDGLNGIDPL
                     QIWAAFGLGAVPSCFLWHGLRERLGTRRALALNLGLQAIGVALPALDDGLAGGLLSAL
                     LVGGTFMGTVTIAMAAARGESRHTPQLAAWMTASYGVGQIAGPLLAEALHGHFRHFAP
                     ALLCAAAGLALAALLSLPRPAPAT"
BASE COUNT          619 a         1335 c         1583 g          580 t
ORIGIN      
        1 tcgcggtagg gcgcgaccat ggccgcgaga gtgtcgttgc gccaggtgct gatcagcagg
       61 tcggcgcagg cgctgatcac tccggtaagg ccgacggtca gcgcccagac cagggtgacg
      121 atgccgatca ggttgtgcag gtcgagccag cgcaggcgcg tggacttgtg ctggcgcacg
      181 gtgccgaagt ccagccggcg catgaacggc gagtagagca ccacgccgga gacgatcgcc
      241 acgacgaaca gaatgcccat ggaggccagc agcagcttgc cgggcaggcc ggcgaacatg
      301 tccacatgca ggcgcagcat cagcatcatg aagccgccgt tggccgccgg catctccacc
      361 gcctcgccgc tgcgggcgtc gagcatgaag gtgtgcgagg agttgggctc ggtgccggcg
      421 gtggcggcca tgatggtcac cacgccgttg ggctcgtcct cttcccagcc caggtactgc
      481 accacctcgc cggggcgatg gcgctcgccg gcctcgacga tctgctgcag gtccaggcgc
      541 ggtgcgtccg gcgccatctc gcgcagctcc ggcgcttcgc ccagcaggtg ttcgatctcg
      601 tgatggaaga tcagcggcag gccggtgagc gccagcagga acaggaacag ggtgcagacc
      661 aggctggtcc aggtgtggac gacggaccag cggcgaatgg tggtggagcg catggtgggc
      721 ggttcgagac gaggaaacgg gctcgcattc tagtggaggc cgggcgccgt ttgaatcgag
      781 aatgttttac aactgatatt gctccgctct atcgcctaga gcgagggcga cagctgccgg
      841 cggcgccagg cctgggcgtg gcgttgtagt tcggccagat tgtccaggcc ctggcggcgc
      901 gccttgctga acaggatcag cgccagttcg gcggtggcca gcgcatcggc gctggcatgg
      961 tggcgctcgc tggcctgcag gcggaagtgc cccagccatt cgtcgaggcc gcggtacggc
     1021 ggcgcctcgg ggcacagcag cggcgccagc acggcgacat cgaggaaggg atggtgcagg
     1081 cggtagccca gttcctcgcg cagggcgcgc tcgagcatgt gctgatcgaa gggcgcgtgg
     1141 aaggccagta gcgggctgtc gtcgacgaac gccatgaacg ccagcaacgc ctcgtccggc
     1201 gcccgcccgg cagccaccgc actgggtgcg atgccatgga tcagcgtgct ggcgccggcc
     1261 cggtggcccg gctggcacag ggtgcattcg aactgctggg agaagtcgat ggcgccgtcc
     1321 tcgatcacca ccgcgccgat ggccagcaac tggtcgcgtt gcaggtcgag gccgctggtc
     1381 tccaggtcca ccaccaccat gcgctggcgg gatagcgggc gctcgtccag cggctgggcg
     1441 gcaggcaggc gcaggctgcg cgggtcgacg gccgggcgag cggggcggaa gcgggcgagc
     1501 agcttcttca tggcgtgccg ccgagcctgg gcggtggagg ggcggtgcgc acggcgcacc
     1561 ctgcgcaggc cgggctcata gctggtaacg cagcgccagg ctggcctgca ggcgctgggc
     1621 ctggcggaag gactcgcgca ggatgcgccg atccaggtgg ttgaggctgt ccgggtcgag
     1681 gcggttggtc agcggcaggc cctgggccgc ctgctgctgg tgcagttgca ggcgggtctg
     1741 ctggatgaag tggtaggcct cctcgtaggc ggcgccgtcc tgggcgtcga tcacccgcag
     1801 ccgtaccagt tcggcgaagc ggcgcagggt gttgctgtcg gccactccgt gggccagggc
     1861 cagcaggcgg gcgccgtcga cgaagggcgt gaggccttcc tccttgaggt cgagggtgtc
     1921 cttctcggcc cccttgcgcg ccaccacgaa gtcgcggaag cgccccagcg gcgggcggtg
     1981 gcgcagggcg ttggccgcca gcaggcgctg gaacaggctg ttgtcgccca cctcggcgag
     2041 caactgccgg cgcagctggg cgcaaccccg ctcatcgccc cagaccacgc ggaggtcgaa
     2101 gtagatgctc gagcccagca ggctctccgg ggtggcctcg cggacgaagg cggagaagcg
     2161 ccgcgtccac tcccggcgcg acaggcacag ctccggattg ccggccatga tgttgccgcg
     2221 gcacagggcg aagccgcact cggcgagcag ctggttgatg cgccgggcgt agggcagcag
     2281 gcgctggcgg atgcgctcgg cctcggcggc gtcggccgcc tcgaagagga tgccgttgtc
     2341 ctgatcggtg tgcagggttt gctcgcggcg gccctcgctg ccgaagcaca gccagctgaa
     2401 cggcacgcca gggtcgccca gctcctccag aacaagctcg atcacccggc acacggtgtg
     2461 atcgttgagc agggtgacca gctgggtgat ctgggtggag ctggcgccgt gggccagcat
     2521 gcgctcgacc agcaggcgga tatcgctgcg cagcgccacc agcgtctcca ggcgcccggc
     2581 gtggcggatg gtgcgtgcca ggtgcaccag gtcgacgcgc tgcagggaga acaggtcgcg
     2641 ctcggacacc acgccgacca ggcgctcgtg ctccaccagg cagacgtggg cgatgtgccg
     2701 ctcggtcatc gccagggcgg cgtcgaaggc gctggcgtcg gggggcagat ggaacgggcg
     2761 ctgggtcatc agcgcgctga tcggctgttc cagcgactcg ccggccgcca ccacccggcg
     2821 caggtcgcgc agggtgaaga tgccgtgcgg gcgctccgcc gcgtcgacga tgacgatgct
     2881 gccgacatgc tgctcgtgca tgcgtcgcac cgcgtcgcgc aacggcgtgt cggcggcgca
     2941 ggccaccggc tgctgcaggg ccagctcgcg cagcgtggtg tccagcgaat actgggcgcc
     3001 gaggttctcg gcggcgcgca gctgcacctg ctggttgacc tggtcgagca ggctggaaac
     3061 gccgcgcagg gcgaaatcgc ggaagggcgc ggactgggcg aacaggcgca cgaacgcgtc
     3121 cttgcccagc agcaggcaga aggtgtcctc gccggccagg tgttcggtgc gggtggcgcg
     3181 ctcgccgagc agggcggcca gggggaagca ttcgccgctg gcgatctcga aggtggtctc
     3241 gctgccgcgc cgggccgagt gcggccgttc gcccaccacc tggccctgct tgacgatatg
     3301 gaagtgctgc accgggccgt cgctcggctt gatgatgctc tcgccggcgg catagaagcg
     3361 cagctggcag tgctcgacca ggtaggcgag ctgggcgctg tccatctggt tgaacggcgg
     3421 gtacttgcgc aggaactcca tggtgccgtg gatgttctgc agcacggccg tcttgcccgc
     3481 ggcgctggac gacatgcggc gctccggagg tgaggtcatg caccgatggt cgtgcctgcg
     3541 gcgcgcgccg cctattggac ctaggtcgca ggcgccgggc gcggcaggct cagcagcgcc
     3601 gccagggcca ggcccgcggc ggcgcacagc agggcgggag cgaagtgccg gaagtggcca
     3661 tgcagggcct cggcgagcag cggcccggcg atctggccca cgccgtagct ggcggtcatc
     3721 catgccgcca gttgtggcgt gtgccgcgat tcgccccggg cggcggccat ggcgatggtc
     3781 accgtaccca tgaaggtgcc gccgaccagc agcgcgctga gcaacccgcc ggcgaggccg
     3841 tcatcgagcg ccggcaacgc cacgccgatg gcctgcagcc ccaggttgag cgccagcgcc
     3901 cggcgcgtcc ccaggcgctc gcgcaggccg tgccagagga aacacgaggg caccgcgccc
     3961 agaccgaagg cggcccagat ctgcagcggg tcgatgccgt tcaggccgtc gcgcagcaac
     4021 actggcaggg aggtggcggt gacgatgtag ccgaagccgg ccaggccgta gagcgtgacc
     4081 aggcgtgcgg ccggcagtgc gcgctcgggc ggcgcct
//
LOCUS       DATIHC010000939         2306 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_15986, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000939 DATIHC010000000
VERSION     DATIHC010000939.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15986"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..84)
                     /locus_tag="VLF16_15615"
     CDS             complement(<1..84)
                     /locus_tag="VLF16_15615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020192569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflK N-terminal
                     domain-containing protein"
                     /protein_id="HSX72360.1"
                     /translation="MAWNEPGGNSNNQDPWGGRKGGGRQGPP"
     gene            complement(180..1481)
                     /gene="hflX"
                     /locus_tag="VLF16_15620"
     CDS             complement(180..1481)
                     /gene="hflX"
                     /locus_tag="VLF16_15620"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome rescue GTPase HflX"
                     /protein_id="HSX72361.1"
                     /translation="MFFERHGGGERAILVHLEGSNPEAAEDPQEFQDLALSAGADMVA
                     LVTVTRHMPTAKFLIGSGKVEELRDLVKESEAELVIFNHTLTPSQERNLERVFECRVL
                     DRTGLILDIFAQRARTHEGKLQVELAQLDHMSTRLVRGWTHLERQKGGIGLRGPGETQ
                     LETDRRLLRVRIRQIKQKLEKVRSQREQARRGRRRADIPSVSLVGYTNAGKSTLFNAL
                     TTSEVYAANQLFATLDPTLRRLELEDLGAVVLADTVGFIRHLPHKLVEAFRATLEESS
                     NSDLLLHVIDSHEPEREQQMEQVMAVLGEIGANELPMLEVYNKIDLVEGVEPQIQRDG
                     DGKPERVWLSARDGKGLELLRQAIAELLGEDLFVGTLRLPQSLGRLRAQFFAANAVQS
                     EAHDEVGDTLLAIRLPRAELNRLVSREGLKPQEFLAQHTLQ"
     gene            complement(1494..1748)
                     /gene="hfq"
                     /locus_tag="VLF16_15625"
     CDS             complement(1494..1748)
                     /gene="hfq"
                     /locus_tag="VLF16_15625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HSX72362.1"
                     /translation="MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVI
                     LLKNTVSQMVYKHAISTVVPSRPVRLPSATEGEQVEPGNA"
     gene            complement(1843..>2306)
                     /gene="miaA"
                     /locus_tag="VLF16_15630"
     CDS             complement(1843..>2306)
                     /gene="miaA"
                     /locus_tag="VLF16_15630"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003290498.1"
                     /note="IPP transferase; isopentenyltransferase; involved
                     in tRNA modification; in Escherichia coli this enzyme
                     catalyzes the addition of a delta2-isopentenyl group from
                     dimethylallyl diphosphate to the N6-nitrogen of adenosine
                     adjacent to the anticodon of tRNA species that read codons
                     starting with uracil; further tRNA modifications may
                     occur; mutations in miaA result in defects in translation
                     efficiency and fidelity; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HSX72363.1"
                     /translation="RRVSGLSMTEHRQRQAAQNGGLEAPGACHLPYTVAQFAIAPDQR
                     QVLHERIARRFHLMLEQGFVEEVEALRLRGDLHAGLPSIRAVGYRQVWDYLEGSIDRE
                     EMAERGIIATRQLAKRQFTWLRGWENLQWLDSLASDNLTRALKYLKVVSIL"
BASE COUNT          434 a          745 c          688 g          439 t
ORIGIN      
        1 cggtggtccc tggcgaccac cgcctttgcg gccaccccag ggatcctgat tgttcgaatt
       61 gccacccggc tcattccaag ccatagcgct ctccatctga taaagcaaag acgcgcccgc
      121 ggcgcgccgc cccatgctac cgaagccccc gagtcgcggc aaaaaccgcg atccaggctt
      181 tattgcaaag tgtgttgcgc gaggaattcc tgcggcttca gaccttcgcg gctcaccagc
      241 cgattgagct cggcgcgcgg caggcgtatc gccagcaggg tatcaccgac ctcgtcatgc
      301 gcctcgctct gaaccgcgtt ggcggcgaag aactgcgcac gcaaacgccc caggctttga
      361 ggcaggcgca gcgtaccgac gaacagatcc tcgcccagca gttcggcaat cgcctggcgc
      421 aataattcga gtcctttacc gtcgcgcgcc gacagccaga cccgttcggg cttgccgtcg
      481 ccatcgcgct ggatctgcgg ctcgacgcct tcgaccaggt caatcttgtt gtacacctcg
      541 agcatcggca attcattggc gccgatctcg cccagcaccg ccatgacctg ctccatctgc
      601 tgctcacgct ccggctcgtg ggagtcgatc acgtgcagca gcaggtcgga gttgctggat
      661 tcttccagcg tcgcgcggaa ggcttccacc agcttgtgtg gcaggtggcg aatgaatccc
      721 acggtgtcgg ccagcaccac cgcccccaga tcctcgagtt cgaggcgccg cagggtcggg
      781 tccagggtgg cgaacagctg gttcgccgca tagacctcgg aggtggtcag cgcgttgaac
      841 agcgtggact tgccggcgtt ggtatagccg accagcgaca ccgaagggat gtccgcacgc
      901 cgacgcccac ggcgagcctg ctcgcgctgg ctgcgcacct tctccagctt ctgtttgatc
      961 tggcgaatgc gcacgcgcag cagacgacgg tcggtctcca gctgggtttc acccgggcca
     1021 cgcagaccga tgccaccctt ttgccgctcg aggtgggtcc agccacggac aaggcgcgtg
     1081 ctcatgtggt cgagctgtgc gagctccacc tgcagtttgc cctcgtgggt acgggcgcgc
     1141 tgggcgaaga tatcgaggat cagaccggta cggtcgagca cccggcactc gaagacgcgt
     1201 tcgaggttgc gctcctggct cggggtgagg gtgtgattga agatgaccag ctcggcctcg
     1261 gactccttga ccaggtcgcg gagctcctcg accttgccgc tgccgatgag gaacttggcc
     1321 gtgggcatgt ggcgcgtcac ggtgaccagg gccaccatgt ccgcgcccgc cgaaagagcc
     1381 agatcctgga actcctgcgg atcttcggcc gcctcggggt tactgccttc caggtgaacg
     1441 agaatggccc gctcaccgcc accgtgacgc tcgaagaaca agtcaggctc ctatcaggcg
     1501 ttgcccggct cgacctgctc gccttccgta gcactgggca ggcgcaccgg gcggctcggc
     1561 accacggtgg aaatggcgtg tttgtagacc atctggctga cagtgttctt cagcaaaatc
     1621 acgaactggt caaaggattc gatctggcct tgcagcttga tgccgttaac cagataaatg
     1681 gaaaccggta cgcgttcctt acgcagggta ttcaggtaag ggtcttgtag cgaatgccct
     1741 tttgacatgt gccgcactcc ttcaaggggt caaattgtag taacgctaaa atggcttatg
     1801 ccgtatcaaa accaaggata gacggcgaat aggcgggtct catcacaata tggagaccac
     1861 cttcaggtat ttcaaggcac gagtcagatt gtcactggcc agactgtcca gccactgcag
     1921 attttcccag ccgcggagcc aggtgaactg gcgcttggcc agctgacgcg tggcaatgat
     1981 gccccgctcg gccatctcct cgcggtcaat gcttccttcc aggtaatccc atacctggcg
     2041 atagcctacc gcgcggatcg atggcagtcc cgcatgcagg tcaccccgca agcgcaacgc
     2101 ttcgacctct tcgacaaagc cctgttccag catcaggtga aatcggcggg cgatccgctc
     2161 gtgcaacacc tggcgctgat ccggggcaat ggcaaattgc gcgacagtat aaggcaaatg
     2221 acacgcgccg ggcgcctcta gaccgccatt ttgcgccgcc tggcgctgac gatgctcggt
     2281 catgctcaag ccgctaaccc gccgca
//
LOCUS       DATIHC010000940         2116 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18275, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000940 DATIHC010000000
VERSION     DATIHC010000940.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2116
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18275"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..776)
                     /locus_tag="VLF16_15635"
     CDS             complement(<1..776)
                     /locus_tag="VLF16_15635"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018928095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HSX72364.1"
                     /translation="MSKTFDIAVIGATGAVGETLVQLLEERDFPVGHLHLLAGDDSAG
                     QAVAFRGKNLRVRALSGFDFAQVQLAFFAAGEAVSRQYAAQANSQGCSVIDLSGALEQ
                     ALPVVPEANAQALAGLSAPYLLASPAPAATALAAVLAPLRSMLTLRRVGLSAILAVSS
                     LGRAGITELARQTTELLNMRPLEPQLFDRQVAFNVLGRVGEEAEGGHAALELRIAREL
                     KSVLGVDGLKVSVNCSLAPVFFGDSLAVCVEATEPVELDKV"
     gene            complement(872..1984)
                     /gene="asd"
                     /locus_tag="VLF16_15640"
     CDS             complement(872..1984)
                     /gene="asd"
                     /locus_tag="VLF16_15640"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HSX72365.1"
                     /translation="MKRVGLIGWRGMVGSVLMQRMLEERDFDLIEPVFFTTSNVGGQG
                     PAIGKDVAPLKDAYSIDELKTLDVILTCQGGDYTSEVFPKLREAGWNGYWIDAASSLR
                     MADDSVIVLDPVNRRVIDQSLDAGTKNYIGGNCTVSLMLMALGGLYEAGLVEWMSAMT
                     YQAASGAGAQNMRELIKQMGAINASVADELADPASAILDIDRKVAEAMRGDAFPVDNF
                     GVPLAGSLIPYIDKELPNGQSREEWKGQAETNKILGRFKNPIPVDGLCVRIGAMRCHS
                     QALTIKLNKDVPMTDIEGLISQHNPWVKLVPNTREASIRDLGPTAVTGTLSVPVGRLR
                     KLNMGTQYLGAFTVGDQLLWGAAEPLRRMLRILLER"
BASE COUNT          365 a          707 c          693 g          351 t
ORIGIN      
        1 accttgtcga gctcgaccgg ctcagtcgcc tccacgcaga cggccagact gtcgccgaag
       61 aataccggcg cgagactaca gttcaccgac actttcaatc cgtcgacgcc cagcacgctt
      121 ttcagctccc gggcgatgcg cagctcgagg gcggcatgac cgccttcagc ttcctccccg
      181 acccgcccca agacattgaa ggcgacctga cgatcgaaca gctgcggctc cagtgggcgc
      241 atgttgagca gctcggtggt ctgccgcgcc agctcggtga tcccggcgcg ccccaggctg
      301 gacacggcga ggatggcgct gagcccgacc cggcgcagcg tgagcatcga acgcagcggt
      361 gcgagcacgg cggccagggc ggtggcggct ggcgccggac tcgccagcag gtagggcgcg
      421 ctcagcccgg ccagggcctg ggcattggct tcgggcacca cgggcagcgc ctgctcgagg
      481 gcaccgctca gatcgatcac cgagcagccc tgcgaattag cctgcgctgc gtactggcgg
      541 ctgaccgcct ctccggccgc gaaaaaagcc aactgcacct gggcgaagtc gaaaccggac
      601 agcgcgcgca cccgcaggtt tttgccgcgg aacgccacgg cctggcccgc cgagtcgtcg
      661 ccggccagca gatgcagatg gccgaccggg aaatcgcgct cctccagcag ttgcaccagc
      721 gtctcgccaa cggcgccggt ggcgccgatc acggcgatat cgaaagtctt ggacatcgga
      781 aaaccccgga gaaagaaggc ggcactctaa ccggccgctg cgcaaaataa aaaggccggt
      841 catggaccgg cctcgggtat cgcggtggcg attagcgctc cagcaggatc cgcagcatgc
      901 gacgcagcgg ttcggccgcg ccccacagca gctggtcgcc gacggtgaag gcgccgaggt
      961 actgggttcc catgttgagt ttgcgcaggc gaccgaccgg tacgctcagg gtgccggtga
     1021 cggcggtcgg gccgaggtcg cgaatgcttg cctcgcgggt gttcggcacc agcttgaccc
     1081 agggattgtg ctggctgatc aggccctcga tgtcggtcat cggcacgtcc ttgttcagct
     1141 tgatggtcag cgcctggctg tggcagcgca tggcaccgat gcgtacgcac aggccgtcca
     1201 ccgggatcgg gttcttgaaa cggccgagga tcttgttcgt ttcggcctgg cccttccact
     1261 cttcgcggct ctgcccgttc ggcagttcct tgtcgatgta ggggatcagg ctgccggcca
     1321 gcggcacacc gaagttgtcg accgggaagg cgtcaccgcg catggcctcg gcgaccttgc
     1381 ggtcgatgtc gaggatggcg ctggccgggt cggccagctc gtcggccacg gaggcgttga
     1441 tcgcacccat ctgcttgatc agctcgcgca tgttctgcgc accggcgccg gaggccgcct
     1501 ggtaggtcat ggcgctcatc cactcgacca gaccggcctc gtacaggccg cccagggcca
     1561 tcagcatcag gctgacggtg cagttgccgc cgatgtagtt cttggtgccg gcgtccagcg
     1621 actggtcgat cacccggcgg ttgaccgggt ccagcacgat caccgaatca tcggccatgc
     1681 gcaggctgga ggccgcgtcg atccagtagc cgttccagcc ggcttcgcgc agcttgggga
     1741 agacttcgct ggtgtagtcg ccgccctggc aggtcaggat cacgtcgagg gtcttcagct
     1801 cgtcgatgct gtaggcatcc ttcagcgggg cgacgtcctt gccaatcgcc gggccttggc
     1861 cgccgacgtt ggaagtggtg aagaacaccg gctcgatcag gtcgaagtca cgctcttcca
     1921 gcatgcgctg catgagcacg gaaccgacca taccgcgcca accgatcaga cctacacgtt
     1981 tcataacgac ttacacctat ataagcagcc cgccggacga atcccgacgg ggctggaaag
     2041 attacagact acgcagcgcc tcgactaccg cgtcgcccat ggcggcggta ccgacacggg
     2101 tcttgccttc cgacca
//
LOCUS       DATIHC010000941         5223 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2144, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000941 DATIHC010000000
VERSION     DATIHC010000941.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5223
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2144"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..334
                     /locus_tag="VLF16_15645"
     CDS             <1..334
                     /locus_tag="VLF16_15645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010222613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSX72366.1"
                     /translation="LRASGHRVLIDDFGTGYSSLSYLQELPADVLKIDKSFVDALGHD
                     AASSGVAPHIIQMANALQLKVVAEGIEHEAQALYLASQGAHCGQGWLFTKPLTARQFR
                     KLLELQAA"
     gene            complement(331..735)
                     /locus_tag="VLF16_15650"
     CDS             complement(331..735)
                     /locus_tag="VLF16_15650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003242184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1330 domain-containing protein"
                     /protein_id="HSX72367.1"
                     /translation="MPSLNPSPAQLAAFAADLPAGQPILMLNLLRYNAAAAYPDASPH
                     AACSGREAYARYSRTALAKVRGVGGEVRLLTPARAALIAPEGEAWDEVLLVRYPSPEA
                     FLGMLADPEYRAATVHRTAALADSRLIGCQDA"
     gene            complement(821..1477)
                     /locus_tag="VLF16_15655"
     CDS             complement(821..1477)
                     /locus_tag="VLF16_15655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015479754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3313 domain-containing protein"
                     /protein_id="HSX72368.1"
                     /translation="MSRTTPLCLGLLAGLLLTGCASQTTQPSQYSGFLADYSELKPAS
                     SASGAPVLRWVSPDYKATDYVSVYVEKPVFYPAPKPSDQVSQATLEQITDYLQQAIER
                     ELSQRMQVVDTPTRDSLVLRSAITGVDSSAEGLKVYEVIPIALVAAAASTAAGTRDRD
                     TNIYVELEAVNAENNQPMVRVVRKGHGLQLENDSSQLTLEDLKPALDTWAKDARSFKP
                     "
     gene            complement(1549..1932)
                     /locus_tag="VLF16_15660"
     CDS             complement(1549..1932)
                     /locus_tag="VLF16_15660"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX72369.1"
                     /translation="MTATPKKILLVEDDQVVRLLTLEVLEEFGYQVLPFEEAPGALEA
                     LRGDEHFDLLMTDVGLPGMDGRQLVRAARQLRPTLPVLFASGYGERELLDEVRASHPD
                     VASEAVVKPYDLALLERLLGELTSG"
     gene            2066..5223
                     /locus_tag="VLF16_15665"
                     /pseudo
     CDS             2066..5223
                     /locus_tag="VLF16_15665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017528053.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
BASE COUNT          850 a         1798 c         1789 g          786 t
ORIGIN      
        1 gttgcgcgcc agcggccacc gggtgctgat cgacgacttc ggtaccggct actccagcct
       61 ctcctacctg caggagctgc cggccgacgt gctgaagatc gataaatcct tcgtcgatgc
      121 cctgggccac gacgccgcca gcagcggcgt ggcgccgcac atcatccaga tggccaatgc
      181 gctgcagctg aaggtggtgg cggagggcat cgagcacgag gcccaggcgc tttacctagc
      241 gtcccagggt gcccattgcg gccagggctg gctgttcacc aagccgctta ccgcccggca
      301 gttccgcaag ctgctggagc tgcaggcggc ctaggcgtcc tggcagccga tcagccgcga
      361 gtcggccagg gccgcggtgc ggtgcacggt ggcggcgcgg tattcggggt cggcgagcat
      421 gccgaggaag gcctccggcg agggatagcg caccagcagc acttcgtccc aggcctcgcc
      481 ctccggcgcg atgagcgcgg cgcgcgccgg ggtcagcagg cgcacctcgc cacccacgcc
      541 acgtaccttg gccagagccg tgcggctgta gcgggcatag gcctcgcggc cgctgcaggc
      601 tgcgtgcgga ctggcgtccg gataggcggc cgcggcgttg tagcgcagca ggttgagcat
      661 gaggatgggt tggcccgcgg gcaggtcggc ggcgaaggcg gccagttgcg ccgggctggg
      721 gttgaggctg ggcatgggcg atctccgtga gggtaggcgg ccagcctgtt cgctccggcc
      781 gcccccttca accgccatca gccggcctga tggcgaccca tcagggtttg aagctccggg
      841 cgtccttggc ccaggtatcc agcgccggct tgaggtcttc gagcgtcagc tggctgctgt
      901 cgttctccag ctgcaggccg tggcccttgc gcaccacccg caccattggc tggttgttct
      961 cggcgttcac cgcctccagc tcgacgtaga tgttggtgtc gcggtcgcgg gtacccgccg
     1021 cggtgctggc ggccgcggcg accagggcga tggggattac ctcgtagacc ttgaggccct
     1081 cggcggaact gtccacgccg gtgatcgcgc tgcgcagcac caggctgtcg cgggtcggcg
     1141 tgtcgaccac ctgcatgcgt tgcgacagtt cgcgctcgat ggcctgctgc aggtagtcgg
     1201 tgatctgctc cagcgtcgcc tggctgacct ggtcgctggg cttgggcgcc gggtagaaca
     1261 ccggcttctc gacgtagacc gagacgtagt cggtcgcctt gtagtccggg gagacccagc
     1321 gcagcaccgg cgcgccactc gccgagctgg ccggcttgag ctccgaatag tcggcgagga
     1381 agccggagta ctgggagggc tgggtggtct ggctggcaca gccggtgagc agcaggccgg
     1441 cgagcaggcc caggcaaagc ggagtggtgc gggacatggt ggacgctcct gttccaggga
     1501 gaatgccacc agcctagatg tcgcttcgct atcccgccag gccgcgtgct agccgctcgt
     1561 aagctcgccc agcagccgct ccagcagggc cagatcgtag ggtttgacga cggcctcgct
     1621 ggccacgtcg ggatggctcg cgcgcacctc gtcgagcagc tcgcgttcgc cataaccgct
     1681 ggcgaacagc accggcaggg tcggtcgcaa ctggcgggcg gcgcgtacca gctggcggcc
     1741 gtccatgccc ggcaggccga cgtcggtcat cagcaggtcg aagtgctcgt cgccgcgcag
     1801 cgcctccagc gcgccgggcg cctcctcgaa gggcagcacc tgatagccga actcctcgag
     1861 gacctcgaga gtgagcagac gcacgacctg atcgtcttcg accagcagga tcttcttggg
     1921 ggtggcggtc atcggttcct cgtgtctcgg ttaacggagc ggcgcagcgc gcaaatgttt
     1981 ggcaaacttc ggggcgcgca cgcggtcagt gcgccatacg cgcccggatc agaagcagcg
     2041 agtcagccaa cgaatggaca tgcccatgtc gaatcagtcc gccatggacg aagatagttt
     2101 tcgtcgtatt ctcagccgca acgtcagcct gcccctgggg ctagggctgc tcagcgcgct
     2161 gttcttcgcc gcggtgatcg gctacctgct caatgccttc aagtgggtgg agcacaccga
     2221 ccaggtactc aatcgcgcca gtgaaatcta caagctgagc ctggacatgg aaaccggcat
     2281 gcgcggattc ctgctcagcg gcaacgagga atacctggag ccctacgagc tggcgcgggt
     2341 caaattcggc ccgctggtgg agcagctcgc cgagcagatc gccgacaacc cgatgcaggt
     2401 gcagcgcacc cagcggctgc tggcgctgca gcagcagtgg gacgaatacg cccaggaaat
     2461 gatcgtggcg cggcgtggcg gcaccgactt cctcggcgac gtgatccgcg gtcgcggcaa
     2521 gagcctgacc gacgccatgc gccgcgaact ggacgccttc atcggtagcg agcgcaccct
     2581 gcgccaggag cgcaatgagg acgtcagcag tagcaccacc tggagcaccg gcgcctacct
     2641 gctggtgagc atcctgttca gcggcctgct ggcgctgttc ggccgtcgcg agctgctcaa
     2701 cctgtcgcgc gtgtattccg aggccatgga caagcaggcc gcctacgccg aggagcaacg
     2761 tcagcgcgcc tggctgcgcg gcggtcagac ccagctcgcc gagcgcctga tcggccagca
     2821 gcaggtgcag gacctggccg atcgatccct ggagttcctc gccgaatacc tcggctgcgt
     2881 ggtctccgcc ctctatctgc gcgacctgca gaccggcgac ctgcagcgta tcgccggtta
     2941 cggcttcagc aacgacgagt cgctggggca gcagttctat cgcaacgacg gcctggtcgg
     3001 gcaggttgcc cagagccgcc gcccggtgca gctggagcag ctgccggacg attacatcaa
     3061 ggtcgcctcc ggcctcggcg agggcgcgcc ggccagcgtg atcctggtgc cgctacaggc
     3121 cgacgaccgt accaacggcg tgctcgagct ggccttcatg cgcccgctcg gcgcgcgcga
     3181 ccaggaattc ctggagtcca tcgccggcgc cgtcggcgcc tcgctggagg ccgcgcgcta
     3241 tcgccagcgc ctgcaggagg tgctggccga gacccagcag ctcaacgagg agctgcagac
     3301 ccagcaggaa gagctgcgcg ccgccaacga ggagctggag cagcaggcac gcctgctcaa
     3361 ggagtcccag gcgcacctgt agacccagca ggccgagctg gagcagacca acgagaaact
     3421 ctccgaacag acccaggtgc tggccgacca gcgcgacgag ctggaccagc gcaacgtcgc
     3481 cctcggccgc attcaggtgc agctggaaga gcgcgccgag gagctgcagc gcgccagccg
     3541 ctacaagtcg gaattcctcg ccaacatgag ccacgagctg cgcacgccgc tgaacagctc
     3601 gctgatcctg gccaagctcc tggcggagaa cccccagggc aatctggatg gcgagcaggt
     3661 gaagttcgcc gagtccatct actcggccgg caacgacctg ctcaacctga tcaacgacat
     3721 cctcgacatc gccaaggtcg aggccggcaa gctcgaggta cgccccgagc gcaccctgct
     3781 cgccagcatg ctcgaggggc tgcgcgacgt gttcgcgccg ctggccggcg agcgcgacct
     3841 gagcttcgag gtcgagctgc acgccggcgt cccgcaggtg ctgttcaccg accgccagcg
     3901 cctggagcag atcctgcgca acctgctgtc caacgccttc aagttcaccg agcgcggcag
     3961 cgtcaccctg agcgtggcgc ggcacgacga gcgcaccctg gccttcgccg tgcacgacac
     4021 cggcatcggc atcgcgccgg accagcagga ggtgatcttc gaggccttcc gccaggccga
     4081 cggcaccacc aaccgccgct acggcggcac cggcctcggc ctgtccatct cgcgtgacct
     4141 ggcgcaactg ctcggcggca gcatcggcgt cagcagcgtg cccggccagg gcagcgtgtt
     4201 caccctgctg gtggccgagc gcatggacga ggcgccgcgc atcgagccgc aaccgctgcc
     4261 ggtgcccgtg caggcgccgc gcccgccggc cccggcgcct gccgtggcgc gcccggtggc
     4321 gtccttcccg gacgaccgcg agctgctggc cgagcgcggc ggccgctgcg tgctggtggt
     4381 ggaggacgag gcgcgcttcg cccgcatcct cttcgacctg gcccacgaac tcggctacgc
     4441 ctgcctggtg gcgccgagcg ccgacgaggg cctggaactg gcgcgcctgc atcgccccga
     4501 cgccatcctg ctcgacatgc acctgcccga tggctccggc ctcggcgtgc tgcagcgcct
     4561 gaaggacgat gcgcagaccc ggcacattcc ggtccacgtg gtttcggtgg aggaccacag
     4621 cgaggcggcc ctgcacctgg gtgcggtcgg ctacgcgctc aagcccacca gccgcgacca
     4681 gctcaaggac gtgttcggca agctcgaggc caagctcaac cagcaggtca agcgcgtgct
     4741 gctggtcgag gacgacccgc tgcagcgcga cagcatcgcc cgactgatcg gcgacgagga
     4801 catcgagatc accgccgtgg cgttcgccgg cgaggcgctg gagaagctgc gcgagacggt
     4861 gttcgactgc atgatcatcg acctcaagct gcccgacatg cagggcaacg agctgctgcg
     4921 gcgcatggcc gccgaggaca tctgctcgtt cccgccggtg atcgtctaca ccgggcgcaa
     4981 cctgacccgt gacgaagaag ccgagctgat gaagtactcg cgctcgatca tcatcaaggg
     5041 cgcccgctcg ccggagcgcc tgctcgacga ggtcaccctg ttcctgcaca aggtcgaggc
     5101 cgagctgtcc agcgagcgcc agcgcatgct caagaccgcg cgcagccgcg acaagctgtt
     5161 cgagggccga cgcctgctgc tggtggacga cgacgtgcgc aacatcttcg ccctgtccag
     5221 cgc
//
LOCUS       DATIHC010000942         1804 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_25278, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000942 DATIHC010000000
VERSION     DATIHC010000942.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1804)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1804)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1804
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25278"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1344)
                     /locus_tag="VLF16_15670"
     CDS             complement(<1..1344)
                     /locus_tag="VLF16_15670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020301416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HSX72370.1"
                     /translation="MTAANPLLQDFDLPPYSLIKPEHVEPAVDQILADSRVAIAELLK
                     TQQANPSWDGLVLALDELNARLGRAWSPVSHLNAVCNNAELRAAYEACLPKLSEYWTE
                     MGQNKPLFEAYDALAKSPASEGFDVAQKTILEHALRDFRLSGIDLPAEQQKRYGEIQM
                     KLSELGSRFSNQLLDATQAWTKHITDESLLSGLTDSAKAQMAQAAQAKELDGWLITLE
                     FPSYYAVMTYADDRALREEVYTAYCTRASDQGPNAGQNDNGPVMAELLDLRQELARLL
                     GFAHYSELSLASKMAESTEQVLHFLRDLAVRSKPFAAQDLDELKAFAAEQGVNDLASW
                     DVGYFSEKLRQQRYSISQEEVRAWFPIDRVLSGLFAIVQKLYGIEINELKDFDSWHPD
                     VRLFEIRENGQHVGRFFFDLYARANKRGGAWMDGARDKRRAADGSLISPVANLVCN"
     gene            1469..>1804
                     /locus_tag="VLF16_15675"
     CDS             1469..>1804
                     /locus_tag="VLF16_15675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014598118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HSX72371.1"
                     /translation="MAIRTYQGTTPQLGPRAFIDASAVVIGDVVLGEDASVWPMAVVR
                     GDMHRIRIGARSSVQDGSVLHITHAGPFNPDGYPLLIGDEVTIGHNVTLHGCTLGNRI
                     LVGMGSIVMD"
BASE COUNT          285 a          562 c          631 g          326 t
ORIGIN      
        1 gttgcacacc aggttggcca ccgggctgat caggctgcca tcggcggcgc gacgcttgtc
       61 gcgggcgccg tccatccagg cgccgccacg cttgttggcg cgggcgtaga ggtcgaagaa
      121 gaagcggccg acatgctggc cattctcgcg gatctcgaac aggcgcacgt ccgggtgcca
      181 gctgtcgaag tccttgagtt cgttgatctc gatgccgtag agcttctgca cgatggcgaa
      241 caggccggac agcaccctgt cgatcgggaa ccaggcgcgc acttcctcct gggagatgct
      301 gtagcgctgc tggcgcagct tctcgctgaa gtagccgacg tcccagctcg ccaggtcatt
      361 cacaccctgt tcggcggcga aggccttgag ctcgtccagg tcctgggcgg cgaagggctt
      421 gctgcgcacg gccaggtcgc gcaagaagtg cagcacctgc tcggtggact cggccatctt
      481 gctggccagg ctcagctcgc tgtagtgggc gaaaccgagc aggcgggcca gctcctggcg
      541 caggtcgagc agctcggcca tcaccgggcc gttgtcgttc tgcccggcgt tcgggccctg
      601 gtcggaggcg cgggtgcagt aggcggtgta gacctcttcg cgcagggcgc ggtcgtcggc
      661 gtaggtcatc accgcgtagt agctggggaa ttccagggta atcagccagc catccagctc
      721 cttggcctgc gcggcctggg ccatctgcgc cttggccgag tcggtgaggc cggaaagcag
      781 cgactcgtcg gtgatgtgct tggtccaggc ctgggtggcg tccagcagct ggttggagaa
      841 gcggctgccc agctcggaca gcttcatctg gatctcgccg tagcgcttct gctgctcggc
      901 cggcaggtcg atgccgctca ggcggaagtc gcgcagagcg tgctcgagga tggtcttctg
      961 cgccacgtcg aagccttcgg acgccgggct cttggccagg gcatcgtagg cctcgaacag
     1021 cggtttgttc tggcccatct cggtccagta ctcggacagc ttgggcaggc aggcctcgta
     1081 ggcagcacgc aactcggcgt tgttgcatac ggcgttaagg tggctgaccg ggctccaggc
     1141 gcggcccagg cgggcattga gttcgtccag cgccagcacc agaccgtccc agctcgggtt
     1201 ggcctgctgg gtcttgagca gctcggcaat ggccacgcgg ctgtcggcga ggatctggtc
     1261 gacggccggc tcgacatgct cgggcttgat cagggaatag ggtggcaggt cgaagtcttg
     1321 cagcagggga ttggcagcgg tcacggcgag gcacctttga ttgtgcgaat gcagactcag
     1381 gttatggggt cgcgggcgac ctttaacaac cggaatgcgc cgaatgttaa ttacaatcgg
     1441 cgccatccgc agcctgaagg agactatcgt ggcgattcga acctaccagg gcaccacccc
     1501 gcagctgggc ccgcgcgcct tcatcgacgc ctccgccgtg gtgatcggcg acgtggtgct
     1561 gggcgaggac gcctcggtct ggccgatggc agtggtgcgt ggcgacatgc accgcatccg
     1621 catcggcgcg cgcagtagcg tgcaggacgg cagcgtgctg cacatcaccc acgccgggcc
     1681 gttcaatccg gacggctacc cgctgctgat cggcgacgaa gtgaccatcg gccacaacgt
     1741 caccctgcac ggctgcaccc tgggcaaccg catcctggtc ggcatgggca gcatcgtgat
     1801 ggac
//
LOCUS       DATIHC010000943         4066 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_39080, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000943 DATIHC010000000
VERSION     DATIHC010000943.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4066
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39080"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..392
                     /locus_tag="VLF16_15680"
     CDS             <1..392
                     /locus_tag="VLF16_15680"
                     /inference="COORDINATES: protein motif:HMM:NF023657.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="portal protein"
                     /protein_id="HSX72372.1"
                     /translation="MELGVEFVSVFAQAQKIVGGRPLDRMIGTIGQIAAAKGDLGVWD
                     KINIDRVVDDYADMYGVNPAIIVDTDDAQAARDARNKQAQAMAMAEAAPKVAQAAKAA
                     GETDMAGVSDVMGGLTGYNTPSPAFVQ"
     gene            435..752
                     /locus_tag="VLF16_15685"
     CDS             435..752
                     /locus_tag="VLF16_15685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72373.1"
                     /translation="MNNPTDIYAQEQAQEAAAERQRLLMLGEKADLMWLMGDARGRRI
                     VARLLDSTGVLSSSFTPDPYWTAHNEGRRKVGIQLLEQLQLHTPGEYLQMMSERILPK
                     EEQ"
     gene            752..1384
                     /locus_tag="VLF16_15690"
     CDS             752..1384
                     /locus_tag="VLF16_15690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72374.1"
                     /translation="MGDEVTNAPAPAAATPAAPAPAPTGAPAAPPAPAEAPAAPAPAA
                     PVEYKFEVPDGFNANPELLTEFTELAKAEGLKPEAAQKAVGLVVKMQQQQIDQHAAMV
                     ASWEKQVKTGVDGEGKPLPDHLRFPTGDQFEPSLAIAKKALDASPPELKALLRDTGMG
                     NHPAVLRAFYNFGKLMQPDNFVPSTPGASGTGGSDDFQSRANRMYSQPSK"
     gene            1393..2397
                     /locus_tag="VLF16_15695"
     CDS             1393..2397
                     /locus_tag="VLF16_15695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019093233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72375.1"
                     /translation="MSVLAANNPTLLDLAARLGPDGNIDTIIELLAAENPILQDLGWQ
                     EGNLPTGHVTTVRTGLPAPTWRKLYGGVQPTKSTTAKITDSCGMLEAYAEVDKALADL
                     NGNTTAFRMSEDAAHVEGMSQEMATKVFYGNEGVTPEAFTGLAPRFNSISGAANAFNI
                     IDAGGTGSDNTSIWLCVWGPQTGFGIYPKGSRAGLQFENKGQVTIENVDGNGGRMEAY
                     RSHYRWDAGLVIRDWRYFGRIANIDVSTLETDINSAKLLVQHMIRLSTRVKRKGGGAG
                     RAVWYVNQTVMENLRLGILEKIANNLLWDTIAGEPVMKFDGIPVRQVDALLNTEARVV
                     "
     gene            2428..2895
                     /locus_tag="VLF16_15700"
     CDS             2428..2895
                     /locus_tag="VLF16_15700"
                     /inference="COORDINATES: protein motif:HMM:NF045314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72376.1"
                     /translation="MILGERTEFADNLSLNTGAAGTYNLGDQIDTGPNQRDLGVGNDL
                     VLVIQASEDITAGSAGTVSLQLVSDSTPTPATDGSQTIHARTASFATSTTPIKAGTVL
                     ATMALPLEGGAYERYLGIQQVTGTAAITAGKINAFLTPLVAKIRHYVSPFHGA"
     gene            2906..3373
                     /locus_tag="VLF16_15705"
     CDS             2906..3373
                     /locus_tag="VLF16_15705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72377.1"
                     /translation="MSNTETKLVVALRMGFYGGAEKRPGDEFLVDGDDEATWFKPVKT
                     RGKNKIDGDSVRAQLGEPASMDPRSAIQTANLTGDEDHDKPVAGEEFNHGDKLTGFEI
                     GKERVAAQDPDTLSKLAKQPVVTPTDLQPARTPAPPMKEQIKQATGSTTPAKK"
     gene            3465..4040
                     /locus_tag="VLF16_15710"
     CDS             3465..4040
                     /locus_tag="VLF16_15710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72378.1"
                     /translation="MAGYRIKYGGFAFLVDEATGRPVGFRDESKGEEFFFPLFDNTQT
                     ALRKPDGTTASVGGGGGGGASAYEVAVANGFPGTEVQWLNSLKGADGAPGAPGTPGTP
                     GTPGLKGDKGDKGDKGDKGDQGDVGPAGTADPFPSITSIVRVGGLITSYNENGVPVTI
                     GRDAAGLPVTVTRNGVTKSITRSGTQITEFQ"
BASE COUNT          832 a         1314 c         1278 g          642 t
ORIGIN      
        1 gcatggagct tggcgtggag ttcgtgagcg tgttcgccca ggcgcagaag atcgttggcg
       61 ggcgtccgct ggatcgcatg atcggaacca tcggccagat cgcagccgcg aagggcgacc
      121 ttggagtgtg ggacaagatc aacattgacc gtgtggtgga cgactacgca gatatgtacg
      181 gggtcaaccc ggcaatcatc gtggacaccg acgacgccca ggctgcgcga gatgcccgca
      241 acaagcaggc gcaagcgatg gctatggcag aggcggcgcc gaaggtggcc caggctgcga
      301 aggctgcggg cgaaacggat atggccggcg tgagcgatgt gatgggcggg ctgactggct
      361 acaacacccc gagcccggca ttcgtgcagt gaccgtgctc ttacccgcgc ataccacatc
      421 gcatagttcg tcccgtgaac aacccaactg acatctacgc tcaggagcaa gcacaggagg
      481 ctgctgccga aaggcagcgc ctcctcatgc ttggtgagaa ggctgacctg atgtggctga
      541 tgggcgatgc ccgtggcagg cgcatcgtgg cccgcctgct cgactcgacc ggcgtgctgt
      601 cgtcatcgtt caccccggac ccctactgga ctgctcacaa cgaggggcgg cgcaaggtag
      661 ggattcagtt gctcgaacaa ctgcagcttc acactccagg cgagtacctg cagatgatgt
      721 ctgagcgcat tctccccaaa gaggaacagt gatgggcgac gaagttacca acgcaccggc
      781 tcctgctgca gccactccgg ctgcgccggc accggccccg actggcgctc ctgccgcgcc
      841 cccggctcct gccgaggcgc ccgctgcgcc ggcccccgct gcacctgtcg aatacaagtt
      901 cgaggtgccg gatggcttca acgccaaccc ggaactgctc accgagttca ccgagcttgc
      961 gaaggccgaa ggcttgaagc ccgaagccgc acagaaggcc gttgggctcg tggtgaagat
     1021 gcagcagcaa cagatcgacc agcacgcggc catggttgcg agttgggaga aacaggtgaa
     1081 aaccggcgtg gatggcgaag gcaagccgct gccggatcac ttgcggttcc ccacggggga
     1141 ccagttcgag ccttccctgg caatcgccaa aaaggcattg gacgcatcgc ctcccgagtt
     1201 gaaggcgctg ctgcgcgata ccggcatggg caaccatccg gctgtgctgc gtgcgttcta
     1261 caacttcggg aagctgatgc agcccgacaa cttcgtgccc agcactcctg gcgcaagtgg
     1321 cactggtggc agcgacgact tccaatctcg cgccaaccgc atgtattcgc aaccttccaa
     1381 gtgaggtaaa ccatgtccgt tcttgcggca aacaacccga ccctgctgga cctcgcggcg
     1441 cggctcggtc ccgatggcaa catcgacacg atcatcgagc tgctcgcggc tgaaaacccg
     1501 atcctgcaag acctgggctg gcaggagggc aacctgccga ccggccatgt caccacggtt
     1561 cgcaccggcc tgccggcccc tacgtggcgc aagctgtatg gcggcgttca gccgaccaag
     1621 agcacgaccg ccaagatcac cgactcgtgc ggcatgctcg aagcctacgc cgaggtggac
     1681 aaggcgcttg ccgacctgaa cggcaacacg accgcgttcc gcatgagcga ggacgccgcg
     1741 cacgttgaag gcatgtcgca ggagatggcg acgaaggttt tctacggcaa cgaaggcgtg
     1801 acgccggaag cgttcaccgg acttgcgccg cgcttcaaca gcatcagcgg cgcggccaat
     1861 gcgttcaaca tcatcgacgc tggcggcacg ggctccgaca acacgagcat ctggctctgc
     1921 gtgtggggtc cgcaaaccgg cttcggcatc tacccgaagg gctcccgcgc cggcctgcag
     1981 ttcgagaaca agggccaagt caccatcgag aacgtcgatg gcaacggcgg gcgcatggaa
     2041 gcctaccgtt cccactaccg ctgggacgcc ggcctcgtga tccgcgactg gcgctacttc
     2101 ggtcgcatcg ccaacatcga cgtttcgact ctggaaaccg acatcaacag cgcgaagctg
     2161 ctggtgcagc acatgatccg tctgtccacc cgcgtcaagc gcaagggcgg cggcgctggc
     2221 cgtgccgtgt ggtacgtcaa ccagaccgtg atggaaaacc tgcgcctggg catcctcgaa
     2281 aagatcgcca acaacctgct gtgggacacc atcgcgggcg agccggtgat gaagttcgac
     2341 ggcatcccgg ttcgtcaggt ggacgccctc ctgaacaccg aggcccgcgt ggtctaaggt
     2401 gcgtcagcaa ccataccgga gaacaccatg atccttggcg aacgcaccga atttgccgac
     2461 aacctcagcc tgaacactgg cgctgccggc acctacaacc tgggcgacca gatcgacacc
     2521 ggccccaacc agcgcgacct gggcgtgggc aacgacctcg tgctggtgat ccaggcgagc
     2581 gaggacatca ccgctggcag cgccggcact gtgtccctgc aactcgtgtc ggacagcacg
     2641 ccgacccccg ctacggatgg ctcgcaaacc atccatgcgc ggacggcgag cttcgctacc
     2701 tccaccacgc cgatcaaggc cggcacggtc ctggcgacga tggccctgcc cctggaaggc
     2761 ggcgcctatg aacgttacct gggcatccag caagtgaccg gcaccgccgc catcacggca
     2821 gggaagatca acgccttcct cacgccgctg gtggcgaaga ttcgtcacta tgtctcgccc
     2881 ttccacggcg cgtaaggagt gaagcatgag caacactgaa accaagcttg tcgttgcgct
     2941 ccgcatgggc ttctacggtg gcgccgagaa gcgccccggc gatgagttcc ttgtggacgg
     3001 cgacgacgaa gcaacgtggt tcaagcccgt caagactcgt ggcaagaaca agatcgacgg
     3061 cgactccgtg cgtgcgcaac ttggcgagcc ggcttcgatg gacccgcgca gcgccatcca
     3121 gaccgcgaac ctgaccggcg atgaggacca cgacaagccc gtggccggcg aggagttcaa
     3181 ccacggcgac aagctgaccg gcttcgagat tggcaaggag cgtgtcgcgg cccaagaccc
     3241 cgacaccctg agcaagctgg cgaagcaacc cgtggtgacg cctaccgacc ttcagcctgc
     3301 gcgcactcct gcgccgccga tgaaggagca gatcaagcag gccacgggca gcacgacgcc
     3361 ggccaaaaag tgatcccgta gtcgcctcgc tacggttgtc ctggggagag gcttttggcc
     3421 cgtgcttgct tcggcagcgc gggccttttt acatggagtg agccatggct ggataccgaa
     3481 tcaagtacgg gggcttcgcc ttcctcgttg acgaagcaac ggggcgtccc gttggcttcc
     3541 gagatgagag caaaggcgag gagtttttct tccccctgtt cgacaacact cagaccgcac
     3601 tgcgcaagcc cgatggaacg accgcttccg ttggcggcgg tggcggtggc ggcgcgagcg
     3661 catacgaggt ggccgttgca aacgggttcc ctggcaccga ggttcaatgg ctgaactcgc
     3721 tgaagggtgc agacggtgcg cccggtgctc ctggcacacc cggcacccct ggaactcctg
     3781 gcttgaaagg tgacaagggc gacaagggtg acaagggcga caaaggggac caaggcgatg
     3841 tcggccccgc tggcactgcc gatcccttcc cgagcatcac cagcatcgtg cgtgttggcg
     3901 ggctcatcac cagctacaac gagaacggcg tgcctgtgac catcgggcgt gatgccgctg
     3961 gcctgcctgt gactgtcacc agaaacggcg tcaccaagag catcacccgc tctggcacgc
     4021 agatcaccga atttcagtga ggagtagaac atgagcggca tcatcc
//
LOCUS       DATIHC010000944         3234 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_16030, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000944 DATIHC010000000
VERSION     DATIHC010000944.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3234)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3234)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3234
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16030"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(254..>3234)
                     /locus_tag="VLF16_15715"
     CDS             complement(254..>3234)
                     /locus_tag="VLF16_15715"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSX72379.1"
                     /translation="VDTAAQGLAELGVALPLDARLGHAEQAWQALQLALGGRSPEVFA
                     SLPDIDNPGIQAIVELLAATVIPGSFIQPDLMLLSTCRIASLSLEFGMSTPAVQALAW
                     LGVASAHHFDHYQEGFRFAATARRLADLPRHASGRTAVLVALDQVSVWTRPLPFALEC
                     AESAFRASLAQGSPSFACYANNHIVSDLLVLGAPIERMLRQIDAGLAMARNLEFDDAQ
                     SILYAQARYIRRLAGDSSGSIPIPPCEELAARVARSHMGPLHFWWQLFEGLLHFLEGN
                     LEGAATHLDRAWTLTWSAPAHIHLIDLALFTVLNRAALQTATGRPQEFGLPMQRLRLW
                     AELNPRYFADRLAVAEAELLRLEGRSLEALQRYEDAIAKAEHCGAVHLKGLSHEMAAR
                     CYEALGLQVGFRTHLRQARDAWRRWGAKTLAQQLEAEHAFLREQPQPTAQALPPGQQR
                     DLLSITRACQALSREIEPSALIETLLANAAVHAGATYTALLLGEDDDLRVAAVGLADS
                     RGIDVRLQPPPAASAAAPLSLARQVMRRRESLLMGGAEALRRFGEDPYLARVENGSLM
                     CVPLLKQNQAIGALYLENCLTQGAFEPARMDVLEVLAAQAAISLSTARLYGDLLAENR
                     RRRESESTLRRTQALMAIGQAVNRYGTFLWRHQSEASFWSPRLIAELGLPVPPDDRHL
                     HDPAVLVHADDRARFVRALRNACERLQPFRLECRTVALDGTPRYLELAGEPDGEAFIG
                     VVCDMSERRQAEAALRNARAELDRTSQATMLGELAASIAHEINQPLASILSNAGASLR
                     WLDRPQPAIGDALESLQDILGEGQRAADIVRAMRTLARRKAIQRKPVALERVIRQVLD
                     ITRAELDDKHVVLSLDMAPALPVLGDAIQLQQVLRNLIVNAVEAMQALPPSMRQLHIL
                     ARPVGADVLVVVEDSGPGVPPEKLGKVFQAFFSTKASGMGMGLAICASIISAHGGVLG
                     ASRGRHDENLFYFTLPGQRG"
BASE COUNT          431 a         1114 c         1217 g          472 t
ORIGIN      
        1 ggctgccggt agcgctccag caggtgctcg cagagctgca gcccggcccg ggacacgcgc
       61 tcgcgctcgc tgtccgcggg cgactgcagc gcctcctgca gggtgacgat cagtcggtag
      121 gtctgagtgt ccagggcggc cgccgccggt gtggccatcg cgttcatggc gttctctccg
      181 tctcgaatgg tggagagcgt gcgcctcggg ttccgtcggc gtccttggcg attcctgaaa
      241 agttctgaag ccctcagccg cgctggccgg gcagggtgaa gtagaacagg ttctcgtcgt
      301 ggcgcccgcg gcttgcgccg agcacaccgc catgggcgga gatgatggag gcgcagatgg
      361 ccagccccat gcccatgccg gaggccttgg tgctgaagaa cgcctggaac accttgccca
      421 gtttctccgg cggtacgccc gggccgctgt cttcgaccac caccagcacg tccgcgccca
      481 ccggccgggc caggatgtgc agctggcgca tgctgggcgg cagtgcctgc atggcctcca
      541 cggcgttgac gatcaggttg cgcagcacct gttgcagctg gatggcgtcg ccgagcaccg
      601 gcagcgccgg cgccatgtcc aggctcagca ccacgtgctt gtcgtccagc tcggcgcggg
      661 tgatgtccag cacctggcgg atcacccgct ccagtgccac cggcttgcgc tggatcgcct
      721 tgcgccgcgc cagggtgcgc atggcacgaa cgatgtcggc ggcgcgctga ccctcgccga
      781 ggatgtcctg caggctttcc agggcgtcgc cgatggccgg ctgcgggcgg tccagccagc
      841 gcaggctggc accggcgttg gacaggatcg aggccagcgg ctggttgatc tcgtgggcga
      901 tggaggcggc cagctcgccg agcatggtgg cctgggaggt gcggtccagt tcggcacggg
      961 cgttgcgcag ggcggcctcg gcctggcgcc gctcgctcat gtcgcagacc acgccgatga
     1021 acgcctcgcc gtccggctcg ccggccagtt ccaggtagcg cggcgtgccg tccagcgcca
     1081 cggtgcggca ttccaggcgg aacggctgca ggcgctcgca ggcgttcctc agcgcccgta
     1141 cgaagcgcgc acggtcgtcg gcatgcacca gcacggcggg gtcgtgcagg tggcggtcgt
     1201 cgggcggcac cggcaggccg agctcggcga tcagccgcgg cgaccagaac gaggcctcgc
     1261 tctggtgccg ccagaggaag gtgccgtagc ggttcaccgc ctggccgatg gccatcagcg
     1321 cctgggtgcg ccgcagcgtg ctctcgctct cgcggcgccg ccggttctcc gccagcaggt
     1381 cgccgtacag ccgcgcggtg ctcagggaaa tcgccgcctg ggcggcgagc acctccagca
     1441 cgtccatccg cgccggctcg aaggcgccct gggtcaggca gttctctagg tacagcgcgc
     1501 cgatcgcctg gttctgcttg agcagcggca cgcacatcag cgagccgttc tccacccgcg
     1561 ccaggtacgg gtcttcgccg aagcgccgca gcgcctcggc accgcccatc agcagcgatt
     1621 cgcggcgccg catcacctga cgcgccaggc tcaggggcgc cgccgcgctg gcggcgggcg
     1681 gcggctgcag gcgcacgtcg atgccgcgac tgtcggccag gccgaccgcc gcgacccgca
     1741 ggtcgtcatc ctcgcccagc agcagcgcgg tgtaggtggc gccggcgtgc acggcggcgt
     1801 tggccagcag cgtttcgatc agcgcgctcg gctcgatctc gcgcgacagc gcctggcagg
     1861 cccgggtgat cgacagcaga tcgcgctgct ggccgggcgg caaggcctgc gccgtcggtt
     1921 gcggctgctc gcggaggaag gcgtgctcgg cctccagctg ttgcgccagg gtcttcgcgc
     1981 cccagcgccg ccaggcgtcg cgggcctgac gcaggtgggt gcggaagccg acctgcaggc
     2041 ccagggcctc gtagcagcgc gcggccatct cgtgggacag ccccttgagg tgcaccgcgc
     2101 cgcaatgctc ggccttggcg atggcgtcct cgtagcgttg cagcgcctcc aggctacggc
     2161 cctccaggcg cagcagctcg gcctcggcca cggccaggcg gtcggcgaag tagcgcgggt
     2221 tgagttcggc ccacaggcgc aggcgctgca tcggcaggcc gaactcctgg ggccggccgg
     2281 tggcggtctg cagcgccgcg cggttgagca cggtgaacag cgccaggtcg atcaggtgga
     2341 tgtgcgccgg cgctgaccag gtcagggtcc aggcccggtc gaggtgggtc gcggcgccct
     2401 cgaggttgcc ttcgaggaag tgcagcaggc cctcgaacag ctgccaccag aagtgcagcg
     2461 gccccatgtg gctgcgcgcc acgcgcgcgg ccagctcctc gcagggcggg atgggaatgc
     2521 tgccggagct gtcgccggcc aggcgccgga tgtagcgtgc ctgggcgtag aggatgctct
     2581 gcgcgtcgtc gaattccagg ttgcgggcca tggccaggcc ggcgtcgatc tgccgcagca
     2641 tgcgctcgat gggggcgccg agcaccagca ggtcggagac gatgtggttg ttggcgtagc
     2701 aggcgaagct cggcgagccc tgcgccaggc tggcgcggaa ggccgattcg gcgcattcca
     2761 gggcgaacgg cagcggccgt gtccacacgc tgacctggtc gagggccacc agcaccgccg
     2821 tgcggccgct ggcgtgtcgc ggcaggtcgg ccaggcggcg cgcggtggcg gcgaaccgga
     2881 agccttcctg gtaatggtcg aagtgatgcg cgctggccac gccgagccag gccagggcct
     2941 gcaccgccgg tgtgctcatg ccgaattcca ggctgaggct ggcgatgcgg caggtgctca
     3001 gcagcatcag gtcgggctgg atgaaggagc cggggatcac ggtggcggcc agcagctcga
     3061 cgatggcctg gatgccgggg ttgtcgatgt ccggcaggct ggcgaagacc tccggcgagc
     3121 gtccgcccag tgccagctgc agcgcctgcc aggcctgctc ggcatggccc aggcgcgcat
     3181 ccagcggcag cgccacgccc agctccgcca ggccctgggc ggcggtgtcc acgg
//
LOCUS       DATIHC010000945         3795 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_22889, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000945 DATIHC010000000
VERSION     DATIHC010000945.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3795)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3795)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3795
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22889"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..194)
                     /locus_tag="VLF16_15720"
     CDS             complement(<1..194)
                     /locus_tag="VLF16_15720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72380.1"
                     /translation="MQNLLYRWLLAVGFGHVVLGVVLAFAVHLPITQPYFDYLHASVA
                     ALPPSVEFQGLLRTLVGLFGP"
     gene            complement(194..2230)
                     /locus_tag="VLF16_15725"
     CDS             complement(194..2230)
                     /locus_tag="VLF16_15725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003461663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HSX72381.1"
                     /translation="MTQAPIARRADGSDPYHWLEQRDAAEVLGYLEAENAYLEAELAE
                     QAALRETLFQEIKGRIRETDLSLPVPWGPWLYYQRTTAGDEYPRHYRCPRPADGSLTV
                     DESAEHLLLDPNALAGDGYLSLGAFTISPDHRLLGYSLDTAGDEIYRLFVKELDSGLL
                     RELPFDDCDGQMTWANDSRTLFFVTLDDTHRPYRLYRHALGDDSAERVFEEADGRFFL
                     SCYRSSSERQLVLNLGSKTTSEAWVLDAETPQGQFACVAPRQEDHEYDIDHGLLDGQW
                     TWFVRSNQAGINFALYVADEAQPGREHWRQLIAHDEQRMLEGVTLNRDAFTLSLREGG
                     LPIIEVHPQSAASYPVQLPDAAYSLYVQDSLEFHNPAIRLRYEALNRPAQVRQLELAT
                     GEQKVLKQTPVEGPFDADAYESRRVWATAADGTQVPISLVARKDVLAAGQSAPLYLYG
                     YGAYGESLDPWFSHARLSLLERGFVFAIAHVRGGGELGEAWYRGGKLEHKQNTFGDFI
                     ACAEQLVADGLTTPTQLAISGGSAGGLLIGAVLNQRPELFAAAIAEVPFVDVLNTMQN
                     PDLPLTVTEYDEWGDPHQPEVFERIKGYAPYENVSAQAYPAILAVAGYNDSRVQYWEA
                     AKWVAKLRATRTDANPLLLKTDLGAGHGGMSGRYQALKDVALEYAFLLKVLGMA"
     gene            2322..2801
                     /locus_tag="VLF16_15730"
     CDS             2322..2801
                     /locus_tag="VLF16_15730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003120494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSX72382.1"
                     /translation="MTEQDYLLAWGLYAIAALGCLLVWFRMTGWIWRLLREPLRVVVA
                     VLLLSPTIVDPARELFAPAIAVTALDLLFQVGNNAWRAVADLAIYGLIALGLWAVFAA
                     LRWPLERWWAGRRDTGSAPLADDEPTLRELMGRDEGFDGDTRLDARGDRRLRIEPRL"
     gene            2861..3304
                     /locus_tag="VLF16_15735"
     CDS             2861..3304
                     /locus_tag="VLF16_15735"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015476350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HSX72383.1"
                     /translation="MNCVFCAIADGQLPAHLIHEDEHFLALLDIYPLRPAHVLIVARG
                     HAPFLADLPAPPRDALLALANRLAAALYRSDATIRGINLLLNDGPVANQHVPHLHLHL
                     IPRRTGDLPALCWRVLTRFLPFGRSRIEARLQREAERLRAALVEA"
     gene            3307..>3795
                     /locus_tag="VLF16_15740"
     CDS             3307..>3795
                     /locus_tag="VLF16_15740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HSX72384.1"
                     /translation="MCELLGMSANVPTDIVFSFTGLMQRGGGTGPHRDGWGIAFYEGR
                     GLRLFQDPLASVGSEVAKLVQRYPIKSETVIGHIRQANVGRVCLANTHPFVRELWGRN
                     WCFAHNGQLRDFAPRFDFYRPVGDTDSEAAFCDLLNRVRGAFPEPVSAEVLLPVLIQA
                     AQD"
BASE COUNT          542 a         1272 c         1348 g          633 t
ORIGIN      
        1 ggcccgaaca ggccgaccag ggtgcgcagc agcccctgga attcgacgct cggcggcagc
       61 gcggccacgc tggcatgcag atagtcgaag tagggctggg tgatcggtag gtggacggcg
      121 aaggccagca ccacgccgag caccacgtgg ccgaagccga ccgccagcag ccagcggtag
      181 agcagattct gcatcacgcc atccccaata ccttgagcag gaaggcgtat tccagcgcca
      241 cgtccttgag ggcctggtag cggccactca tgccgccgtg gcccgcgccc agatcggtct
      301 tgagcagcag cgggttggcg tcggtgcggg tggcacgcag cttggccacc cacttggccg
      361 cctcccagta ctgcacgcgg ctgtcgttgt agccggccac ggcgaggatc gccggatagg
      421 cctgggcgct gacattctcg tagggcgcgt agcccttgat gcgctcgaaa acttcgggct
      481 ggtgcgggtc gccccactcg tcgtactcgg tcaccgtcag cggcaggtcg gggttctgca
      541 tggtgttgag cacatcgacg aagggcactt cggcgatggc cgcggcgaac agttcggggc
      601 gctgattgag cacggcgccg atcagcaggc cgccggcgct gccgccgctg atggccagct
      661 gcgtgggtgt ggtcaggccg tcggcgacca gctgctcggc acaggcgatg aagtcgccga
      721 aggtgttctg cttgtgttcc agtttgccgc cgcggtacca ggcctcaccc agctcgccgc
      781 cgccgcgcac atgggcgatg gcgaagacga agccgcgctc cagcagcgag aggcgcgcgt
      841 ggctgaacca ggggtcgagg ctctcgccgt aggcgccgta gccatacagg tagagcgggg
      901 cgctctggcc ggcggcgagc acatcctttc gcgccaccag gctgatcggc acctgggtgc
      961 cgtcggcggc cgttgcccag actcgtcggc tctcgtaggc gtcggcgtcg aacgggcctt
     1021 ccaccggagt ctgcttgagc actttctgct cgcctgtggc cagctccaat tggcggacct
     1081 gggccgggcg gttgagcgcc tcgtagcgca ggcggatcgc cgggttgtgg aattccaggc
     1141 tgtcctgcac atagaggctg tacgcggcgt cgggcagctg cacggggtag gacgcggcgg
     1201 actgcggatg cacctcgatg atgggcaggc cgccctcgcg caggctgagg gtgaaggcgt
     1261 cgcggttgag ggtgacgccc tcgagcatgc gctgctcgtc atgggcgatc agctggcgcc
     1321 agtgttcgcg gcccggctgc gcctcatcgg cgacatacag ggcgaagttg atgccggcct
     1381 ggttgctgcg cacgaaccag gtccattgcc cgtccagcag accgtggtcg atgtcgtatt
     1441 cgtggtcctc ctggcgcggc gccacgcagg cgaactggcc ctgcggcgtt tcggcgtcga
     1501 ggacccaggc ttcgctggtg gtcttgctgc cgaggttgag aaccagctgg cgctcggagc
     1561 tcgaacggta gcaactgagg aagaagcgtc cgtccgcctc ctcgaacacc cgttcggcgc
     1621 tgtcatcgcc gagcgcatgg cgatacagac ggtacggccg gtgggtgtcg tccagggtga
     1681 cgaagaacag ggtgcggctg tcgttcgccc aggtcatctg gccgtcgcag tcgtcgaagg
     1741 gcagctcgcg cagcaggccg ctgtccagct ccttgacgaa caaccggtag atctcgtcgc
     1801 cggcggtatc caggctgtag ccgagcaggc ggtggtccgg gctgatggtg aaggcgccga
     1861 gcgacaggta gccgtcgccg gccagggcat tgggatcgag cagcaggtgc tcggcgcttt
     1921 cgtccacggt cagcgaaccg tcggccgggc gcgggcagcg gtaatgacgc gggtattcgt
     1981 cgccggcggt ggtgcgctgg tagtacagcc aggggcccca gggcaccggc agggaaaggt
     2041 cggtctcgcg gatgcggccc ttgatctcct ggaacagcgt ctcgcgcagt gcggcctgct
     2101 cggcaagttc ggcttccagg taggcgttct cggcctcgag gtagccgagc acctcggcag
     2161 cgtcgcgctg ctccagccag tggtaggggt cggagccgtc tgctcggcgg gcgatggggg
     2221 cttgggtcat gctcgttctc gttcgggcga ccgcagggag gtcggggtgc gcaaaagccg
     2281 ttatcataag cgcccctttg ccggccaagc cacgacacac catgaccgaa caagactatc
     2341 tgctcgcctg gggcctctac gcgatcgccg cgctgggctg cctgctggtg tggttccgca
     2401 tgaccggctg gatatggcgc ctgttgcgtg agccgctgcg ggtggtggtc gccgtgctgc
     2461 tgctgagccc taccatcgtc gacccggccc gggagctgtt cgccccggcc atcgccgtca
     2521 ccgcgctgga cctgctgttc caggtcggca acaacgcctg gcgcgcggtc gccgacctgg
     2581 ccatctacgg cctgatcgcc ctcggcctgt gggccgtatt cgccgcgctg cgctggccgc
     2641 tcgagcgctg gtgggccggg cgtcgcgaca ccggttccgc gccgttggca gacgacgagc
     2701 cgaccctgcg cgagctgatg ggccgcgacg agggcttcga cggtgatacc cgcctggacg
     2761 cccgcggcga ccgtcgactg cgcatcgagc cgcgtctgta gggagcgggt tgcacgccgg
     2821 gcgcgctgcg ctagcatggc cgcatcgaca aggagagccc atgaactgcg tgttctgcgc
     2881 catcgccgac gggcagctgc cggcgcatct gattcatgaa gacgagcact tcctggcgct
     2941 gctggacatc tacccgctgc gcccggccca tgtgctgatc gtcgcccgcg gccacgcccc
     3001 ctttctcgcc gacctgccgg ctccgccgcg cgacgccctg ctggccctgg ccaaccggct
     3061 ggccgcggcg ctgtatcgca gcgatgcaac gatccgcggc atcaacctgc tgctcaacga
     3121 cggccccgtc gccaaccagc acgtgccgca cctgcatctg cacctgatcc cccgccgcac
     3181 cggcgacctg ccggcgctgt gctggcgcgt cctcacgcgc ttcctgccgt tcgggcgctc
     3241 gcgcatcgag gcgcgcctgc aacgtgaggc cgagcggctg cgcgcggcgc tggtggaggc
     3301 ctgaccatgt gcgaactgct cggcatgagc gccaacgtgc ccaccgacat cgtcttcagc
     3361 ttcaccggcc tgatgcagcg cggcggcggt accggcccgc accgcgatgg ctggggcatc
     3421 gccttctacg aggggcgcgg cctgcgtctg ttccaggacc cgttggccag cgtcggctcg
     3481 gaagtggcca aactggtgca gcgctatccg atcaagagcg agacggtgat cggccatatc
     3541 cgccaggcca acgtcggccg ggtctgcctg gccaacaccc atcccttcgt gcgcgagctg
     3601 tgggggcgca actggtgctt cgcccacaac ggccagctgc gcgatttcgc gccgcgcttc
     3661 gacttctacc ggccggtcgg cgataccgac agcgaggcgg cgttctgcga cctgctcaat
     3721 cgggtacgcg gcgccttccc cgagccggtg tcggcggaag tgctgctgcc ggtgctgatc
     3781 caggcggccc aggac
//
LOCUS       DATIHC010000946         3625 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_46257, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000946 DATIHC010000000
VERSION     DATIHC010000946.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3625
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46257"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            36..1622
                     /gene="gshA"
                     /locus_tag="VLF16_15745"
     CDS             36..1622
                     /gene="gshA"
                     /locus_tag="VLF16_15745"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011920618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HSX72385.1"
                     /translation="MSDLLNRRLALLGDAAHLSLLTQCLHGIERETLRVTADGQLAQT
                     PHPQALGSALTHEQITTDYSEALLEFITPAEPNPADTLADLERIHRFAASRLDGEYLW
                     SPSMPGLLPEEADIPIARYGSSNIGRLKYVYRQGLALRYGKTMQCIAGIHYNFSLPEA
                     VWPLLQRLDGDSQSARDYQSAAYIALIRNFRRYSWLLMYLFGASPALDASFLRGRPHR
                     LQQLDADTLYLPHATSLRMSDLGYQSSAQEGLTPCYNDLASYTESLRRAVATPYPAYA
                     EIGTKDANGEWLQLNTNVIQIENEYYSSIRPKRVTRSGERPIQALMSRGVQYVEVRCL
                     DINPYLPLGIDLDQARFLDAFILFCALSDSPLLGGGECRGCTDNFLKTVKEGRRPGLQ
                     LQRGAQQIELRAWAGELLDAFAPIAALLDRAHGGDAYQAALGLQQRKVEDPSLTPSAR
                     VLAELQARGERFRDFALRQSAAHAATLREQPLSAAEEQTFERMARESLAAQAELERAE
                     AEDFDHFVAAYQASILGIGV"
     gene            1767..1964
                     /locus_tag="VLF16_15750"
     CDS             1767..1964
                     /locus_tag="VLF16_15750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010485960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome modulation factor"
                     /protein_id="HSX72386.1"
                     /translation="MTPAEDNHDWSLESLNKAYQQGYMAGLTGQPQHAQPYPAEVLAA
                     AWEAGWDDGNEQYAVHQRRSA"
     gene            complement(2310..3608)
                     /gene="argA"
                     /locus_tag="VLF16_15755"
     CDS             complement(2310..3608)
                     /gene="argA"
                     /locus_tag="VLF16_15755"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004042 - acetyl-CoA:L-glutamate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HSX72387.1"
                     /translation="MHDYVNWLRHASPYINAHRDCTFVVMLPGEGVEHPNFGNIVHDL
                     VLLHSLGVRLVLVHGSRPQIEARLAERGLAPRYHRDLRITDGPTLDCVIDAVGRLRIA
                     IEARLSMDMAASPMQGSRLRVSGGNFVTARPIGVVDGVDYHHTGEVRRVDRKGIGRLL
                     DERSIVLLSSLGYSPTGEIFNLACEDVATRAAIDLQADKLLLFSAERGLLDEAGKLVR
                     ELRPQQVPAHLARLGSCYQAELLDAAAQACRAGVKRGHIVSYMEDGSLLTELFTRDGG
                     GTLVDQEQFESLREATIEDVGGLIELITPLEDQGILVRRSREVLEREIGQFSIVERDG
                     LIIACAALYPIADSEAGELACLAVNPEYRHGGRGDELLERIEERARALGLKTLYVLTT
                     RTAHWFQERGFGPSAVDRLPAARASLYNYQRNSKIFEKAL"
BASE COUNT          609 a         1314 c         1182 g          520 t
ORIGIN      
        1 atataggggc gaccgtcgag tgaaggaaaa gaatcttgag cgatctcctc aaccgccgcc
       61 tggccctgct cggcgatgcc gcccacctgt ccctgctcac ccagtgcctg cacggcatcg
      121 agcgcgagac cctgcgcgtg accgccgatg gccagctggc gcagacgccg cacccgcagg
      181 ccctcggctc ggcgctgacc cacgaacaga tcaccaccga ctattccgag gcgctgctgg
      241 agttcatcac cccggccgag ccgaacccgg ccgacaccct ggccgacctc gaacgcattc
      301 accgcttcgc cgccagccgc ctggacggcg agtacctgtg gagcccgtcg atgccgggcc
      361 tgctgcccga ggaagcggac atccccatcg cccgctacgg cagctccaac atcggtcgcc
      421 tcaagtacgt gtaccgccag ggcctggccc tgcgctacgg caagaccatg cagtgcattg
      481 ccggcatcca ctacaacttc agcctgccgg aggcggtctg gccgctgctg cagcggctgg
      541 acggcgatag ccagagcgca cgcgactacc agtccgccgc ctacatcgcg ctgatccgca
      601 acttccgccg ctacagctgg ctgctgatgt acctgttcgg cgcctcgccg gcgctggatg
      661 ccagcttcct gcgcggccgt ccgcaccggc tgcagcagct cgacgcggat accctctatc
      721 tgcctcatgc caccagcctg cgcatgagcg acctgggcta ccagagcagc gcccaggaag
      781 gcctgacacc ctgctacaac gacctggcca gctacaccga gagcctgcgc cgcgcggtcg
      841 ccacgcccta tccggcctat gccgaaatcg gcaccaagga cgccaacggc gagtggctgc
      901 agctcaacac caacgtcatc cagatcgaaa acgagtacta ctcgagcatc cgtccgaaac
      961 gcgtcacccg ctccggcgag cggccgatcc aggcgctgat gagccgcggc gtgcagtacg
     1021 tggaagtgcg ctgcctggac atcaacccct acctgccgct gggcatcgac ctggaccagg
     1081 cgcgcttcct cgacgccttc atcctgttct gcgccctgtc cgacagcccg ctgctgggcg
     1141 gcggcgaatg ccgcggctgc accgacaatt tcctcaagac ggtcaaggag ggacgccgtc
     1201 ccggcctgca gctgcagcgt ggtgcgcagc agatcgaact gcgcgcctgg gccggcgagc
     1261 tgctcgacgc cttcgcgccg atcgccgccc tgctcgaccg cgcccacggc ggcgacgcct
     1321 accaggcggc gctgggactg cagcagcgca aggtcgaaga tcccagcctg acgccgtcgg
     1381 cgcgggtgct ggccgagctg caggcacgcg gcgagcgctt ccgcgatttc gccctgcggc
     1441 agagcgcggc ccacgccgcg accctgcgcg agcaaccgct gagcgcggcc gaggagcaga
     1501 ccttcgaacg catggcccgc gagtcgctgg ccgcgcaggc ggagctcgag cgcgcagagg
     1561 ccgaggactt cgaccacttc gtcgccgcct accaggccag cattctcggc attggcgttt
     1621 gaaatcaggc acctgggtga cggaccggcg cagacagcgg tagtccgtca caaatccgcc
     1681 accttgaccg ttcggttctg accagcggca cgcgaacggc tctggcgcgg gctagcctgt
     1741 cgggaaaccc gcatcggcca accgccatga cgcccgccga agacaaccac gactggagcc
     1801 tggaaagcct caacaaggcc taccagcaag gctacatggc cggactcacc ggccagccac
     1861 agcacgcgca accctacccc gccgaagtct tggccgccgc ctgggaggcc ggctgggacg
     1921 acggcaacga gcagtacgcc gtgcaccagc gccgcagcgc ctgatcgctc cgagcccatc
     1981 gacaaccctg ccggcccagg cagaactgcc catcaccatc gacctgcgac tatcgtggcc
     2041 gctagcgtgc gcacggcccg tagggtgcgc cgtgcgcacc accgaagccg cccgcagagc
     2101 ccctgtcaca cggcattccc gaagtcttcg aattggactg gtagttgtgc tgctacgccc
     2161 gcgcggcgcc ctgtgcccca aatcgagaat gctgctggct caggtcaaaa tgcccatcac
     2221 tttcaccgtg tggaagccgc gaccaatcgc tgcgcgcacg cccccgtagg gtgcgctgtg
     2281 cgcaccatcg gaagccacct ggggccctgt tacagcgcct tctcgaagat cttcgaattg
     2341 cgctggtagt tgtacagcga ggcccgcgcc gccggcaggc ggtcgacggc gctgggcccg
     2401 aagccgcgct cctggaacca gtgggcggtg cgggtggtga gcacgtagag ggtcttcagc
     2461 cccagcgccc gggcccgctc ctcgatgcgc tccagcaact cgtcaccgcg gccgccgtga
     2521 cggtactccg ggttgactgc caggcaggcc agctcgccgg cctcggaatc ggcgatcggg
     2581 tagagtgcgg cgcaggcgat gatcaggccg tcgcgctcga cgatgctgaa ctggccgatc
     2641 tcccgctcca gcacctcgcg cgagcggcgc accagtatgc cctggtcctc cagcggggtg
     2701 atcagttcga tcaggccgcc gacgtcctcg atggtcgcct cgcgcagcga ctcgaactgc
     2761 tcctggtcga ccagggtgcc gccgccgtcg cgggtgaaca gctcggtgag cagcgagccg
     2821 tcttccatgt agctgacgat atggccgcgc ttgaccccgg cgcggcaggc ctgggcggcg
     2881 gcgtcgagca gctcggcctg gtagcagctg ccgagacgcg ccaggtgcgc cggcacctgc
     2941 tgcgggcgca gttcgcgcac cagcttgccg gcctcgtcga gtaggccgcg ctcggcgctg
     3001 aacagcagca gcttgtcggc ctgcaggtcg atggcggcgc gagtggcgac gtcctcgcag
     3061 gccaggttga agatctcccc ggtgggcgaa tagccgagcg acgagagcag cacgatgctg
     3121 cgttcgtcga gcaggcggcc gatgcccttg cggtcgaccc ggcgcacctc gccggtgtgg
     3181 tggtagtcga cgccgtcgac cacaccgatc ggccgcgcgg tgacgaagtt gccgccggac
     3241 acgcgcaggc gcgagccctg catcggcgag gcggccatgt ccatcgacag ccgcgcctcg
     3301 atggcgatgc gcaggcgccc gaccgcatcg atcacgcaat ccagggtcgg cccgtcggtg
     3361 atgcgcaggt cgcggtgata gcgcggcgcc aggccgcgct cggccaggcg cgcctcgatc
     3421 tgcgggcgcg agccgtgcac cagcaccagg cgcacgccga ggctgtgcag cagcaccagg
     3481 tcgtggacga tgttgccgaa attcggatgt tccacaccct cgccgggcag catgaccacg
     3541 aaggtgcagt cccggtgggc gttgatgtag ggcgaagcgt ggcggagcca gttgacgtag
     3601 tcgtgcatga gagaggtcgc agtac
//
LOCUS       DATIHC010000947         2059 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_22908, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000947 DATIHC010000000
VERSION     DATIHC010000947.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2059
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22908"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            78..545
                     /locus_tag="VLF16_15760"
     CDS             78..545
                     /locus_tag="VLF16_15760"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSX72388.1"
                     /translation="MVAFIFEHGPNPWNYLPQDAVLAHLQGIAEGSVQAVLAQQEGGE
                     LAGFVTFLASSNFERYQAPERRDLPLGYVGEAVVHRELAGRGLGSRLLGEAVRGLHAR
                     GIRDIYIERHEENAGSAGMMRKAGFVEVATFADPERRGAGSRRTTLCYLRGID"
     gene            complement(542..1579)
                     /gene="gap"
                     /locus_tag="VLF16_15765"
     CDS             complement(542..1579)
                     /gene="gap"
                     /locus_tag="VLF16_15765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016491545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0019682 - glyceraldehyde-3-phosphate
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HSX72389.1"
                     /translation="MLRIALNGYGRIGRALLRALFERELENQLHVEAINETGDFATLA
                     HLTRFDSTFGRFLGQVDIREDVMQVRGQSIHLINQKDFTQLPWKQMAVDVVVDCTGKA
                     KKRALAEQHLTAGAPRVLLSHPLDSADLTVVYGVNHHLLGNQQIVSNASCTTNCLAPL
                     AQVLHTAVGIRQGLMTTVHAYTNDQNLLDKTHNDLYRARAAAQSMIPTSTGAAKTIGL
                     VIPELDGRLDGMAVRVPTSNVSLLDLTFTSEHPTSREAINDCLQKAARQFPLGVMECN
                     DLPLVSADFNGYPVSCVVDLNHTRVQGDNLVKVLAWYDNEWAFANRLLDVLQAWLKPL
                     EPMRTVPVQLG"
     gene            complement(1664..>2059)
                     /locus_tag="VLF16_15770"
     CDS             complement(1664..>2059)
                     /locus_tag="VLF16_15770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012700577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72390.1"
                     /translation="DLDGELSLEQVYRLQGEGPGCNEPGFDQLLLRASGHEPDWSLGV
                     GDAGLVLLRPDQEPLALPYLEEQLPNGSFSLSSEANGQRLELWLTPQRCVDDMSGAVQ
                     HLSAELRLNGEVQRGCAYFGGARTDAHSR"
BASE COUNT          304 a          668 c          740 g          347 t
ORIGIN      
        1 ctgcccgacc tgccgagctg cggcctgtga acggcacgtt cgccagccgg ccggcgcgtg
       61 ccgaggacat cccggcgatg gtcgccttca tcttcgagca cggtcccaat ccctggaact
      121 atctgcccca ggacgccgtg ctggcgcatc tgcagggcat cgccgagggt tcggtacagg
      181 ccgtgttggc gcagcaggaa ggcggcgaac tggccggttt cgtcaccttc ctggccagca
      241 gcaacttcga gcgctaccag gcgccggagc gccgcgatct acccctgggc tatgtcggcg
      301 aggcggtggt gcaccgcgag ctggccggcc gcggcctggg cagccggctg ctcggcgagg
      361 cagtgcgggg gttgcatgcg cggggcatcc gcgacatcta catcgaacgc cacgaggaga
      421 acgccggctc ggcgggcatg atgcgcaagg ccggcttcgt cgaggtggcg acctttgccg
      481 accccgagcg gcgtggcgcg gggagccggc gcaccacgct ctgctacctg cgggggatcg
      541 actagccgag ctgcacgggc accgtgcgca tcggctccag cggcttgagc caggcctgca
      601 gcacgtccag caggcgattg gcgaacgccc attcgttgtc gtaccaggcc agcaccttga
      661 ccagattgtc gccctgcacc cgggtgtggt tgaggtcgac cacgcaggac accgggtagc
      721 cgttgaagtc ggcggagacc agtggcagat cgttgcactc catcacgccg agggggaact
      781 ggcgggcggc cttctgcagg cagtcgttga tcgcctcgcg gctggtcggg tgctcgctgg
      841 tgaaggtcag gtcgagcagc gacacgttgg aggtcggcac ccgcaccgcc atgccgtcga
      901 ggcggccgtc cagttcggga atcaccaggc cgatggtctt ggccgcgccg gtgctggtgg
      961 ggatcatcga ctgggcggcg gcgcgggcgc ggtagaggtc gttgtgggtc ttgtcgagca
     1021 ggttctggtc gttggtgtat gcgtgcaccg tggtcatcag cccctggcgg atgcccaccg
     1081 cggtgtgcag cacctgggcc agcggcgcca ggcagttggt ggtgcaggag gcgttggaga
     1141 cgatctgctg gttgcccagc aggtgatgat tgacgccgta gaccacggtc aggtcggcgc
     1201 tgtccagcgg gtgcgacagc agcacccgcg gcgcaccggc ggtgaggtgc tgctcggcca
     1261 gggcacgctt cttggccttg ccggtgcagt cgaccaccac gtccacggcc atctgtttcc
     1321 agggcagctg ggtgaagtcc ttctggttga tcaggtggat cgactggccg cgcacctgca
     1381 tcacgtcttc gcggatgtcc acctggccga ggaagcggcc gaaggtggag tcgaaacggg
     1441 tcaggtgggc gagggtggcg aaatcgccgg tctcgttgat cgcctcgacg tgcagctggt
     1501 tttccagctc acgctcgaac aaggcgcgca gcagggcgcg accgatgcgc ccgtatccat
     1561 tcagagcaat ccgcagcatg catgtctccg ccgtctgggt tcgtcttcag cataggcggc
     1621 ccatccgccc cgtgaaagcg aggcggggtc ggagagtcgt gcttcaacga ctatgcgcgt
     1681 cggtgcgtgc gccaccgaaa taggcacagc cgcgctgcac ctcgccgttc aggcgcagct
     1741 cggcgctgag gtgctgcacc gcaccgctca tgtcgtcgac gcagcgctgc ggcgtcagcc
     1801 acagttccag gcgctggccg ttggcctcgc tgctcaggct gaagctgccg ttcggcagct
     1861 gctcttcgag gtagggcagc gccagtggct cctggtccgg gcgcagcagc accaggcccg
     1921 cgtcgccgac gcccaggctc cagtccggct cgtggccact ggcgcgcagc aacagctgat
     1981 cgaagccggg ctcgttgcag ccggggcctt cgccctgcag acggtagacc tgctccaggc
     2041 tcagctcgcc atccaggtc
//
LOCUS       DATIHC010000948         3101 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_39134, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000948 DATIHC010000000
VERSION     DATIHC010000948.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3101
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39134"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(31..228)
                     /locus_tag="VLF16_15775"
     CDS             complement(31..228)
                     /locus_tag="VLF16_15775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SEC-C metal-binding domain-containing protein"
                     /protein_id="HSX72391.1"
                     /translation="MTQQPHVHGPDCNHDHDHHHDDGHVHGPHCNHHHQEPVRNPLKE
                     VGRNDPCPCGSEKKFKKCHGA"
     gene            complement(234..728)
                     /locus_tag="VLF16_15780"
     CDS             complement(234..728)
                     /locus_tag="VLF16_15780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016851905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LEA type 2 family protein"
                     /protein_id="HSX72392.1"
                     /translation="MFLQARARTIGLAIIIGLHAGLSGCAGWFSGDFQDPEVRLVKVD
                     VIKARLLEQRFSLRFRIDNPNDVDLPVRGLVYDVHLNGIQLAEGESSEWFTVPSHGRS
                     EFEVPVRTNLWRHVKQIVKALEDPDQPIRYSLNGEVKTGLFFGRNVHMRRDGEIIPGD
                     YIPE"
     gene            841..1395
                     /locus_tag="VLF16_15785"
     CDS             841..1395
                     /locus_tag="VLF16_15785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003086339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72393.1"
                     /translation="MSLYEIAFAGQVVPGAPLEQVQANLARLFQADAQRIALLFSGRR
                     IVIKSGLDAAGAEKYRATMERAGAVAIVQALEVEEVEMAPPPAPEPVATPMASPAAAP
                     MQHGSARVIPRDEYMAAFSDVQAPDFGIAPVGADLQDARAEAQAPQVDFSQFSLAPVG
                     SDMGQAKGAPAAPPPDTSHLKLQE"
     gene            complement(1435..2550)
                     /locus_tag="VLF16_15790"
     CDS             complement(1435..2550)
                     /locus_tag="VLF16_15790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016983593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72394.1"
                     /translation="MHKHSGMAAALAVLLSAGAMSAHADDVKVDLGSSERVTRLFAYP
                     NNCSVICYRDWTLEQTVEHYLKQSLERDGLSGATVEVSRDGEALSARFGGVPANYGKA
                     LTDLLNAGDLAYTGASKLNGDGKWQYSWYFFLPLGMALENRKSVELLHFPPDYSLTQA
                     QDYLESKTTDRWAELLTENGVAAAQTPAYQTIIDIAPIAAPASAGSDLEGVYDYFTDY
                     QKTMVAELTADDGATLPMVAFGGPVRTWVNKQYGANIGVLGLDEISPAPGQKVPVLGA
                     NHPSYIWYAADPENYGGDQAKADAAGLKVMGQDISAACWQAGMGQNPGADPQQTLNAC
                     TQKWQVTDKVQTCELFYTSVRNLTPPQAEAKCTTSKS"
     gene            complement(2609..3082)
                     /locus_tag="VLF16_15795"
     CDS             complement(2609..3082)
                     /locus_tag="VLF16_15795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010450533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HSX72395.1"
                     /translation="MNPACPCGSGDELSVCCGPYHQGAAAPSAEHLMRSRYSAYVLGL
                     VDYLVATTLPAQQSALDRDGIRAWSLGSTWLGLDVESSELIGAQPEHAFVTFIARWHD
                     DAGEHAHRERSAFVQRDGRWYFLDPTAPIKAGRNDPCPCGSAQKFKKCCSGYLTF"
BASE COUNT          468 a          979 c         1080 g          574 t
ORIGIN      
        1 gcatggaacc ctgccggcga ggagctcaga tcaggcgccg tggcacttct tgaacttctt
       61 ttcgctgccg caggggcagg ggtcgttgcg gccgacttcc ttcagcgggt tgcgcaccgg
      121 ttcctggtgg tgatggttgc agtgcgggcc atgcacgtga ccgtcatcgt ggtgatgatc
      181 gtggtcgtgg ttgcagtcgg ggccgtgtac gtggggttgc tgagtcatga agctcactcc
      241 gggatgtaat cgccggggat tatctcgcca tcgcggcgca tatgcacgtt gcggccgaag
      301 aacagtccgg tcttcacctc gccattcagg ctgtagcgaa tcggctggtc ggggtcctcg
      361 agtgccttga cgatctgctt gacatggcgc cacaggttgg tccgcaccgg cacctcgaac
      421 tcgctgcggc cgtggctcgg cacggtgaac cattcgctgg attcgccctc ggcgagctgg
      481 atgccattga ggtgcacgtc gtagaccaga ccgcggaccg gcaggtcgac gtcgttgggg
      541 ttgtcgatgc gaaagcgcag ggaaaaccgc tgctccagca gtctggcctt gatcacatcg
      601 accttgacga ggcggacttc cgggtcctgg aaatcaccgc tgaaccagcc ggcgcatccc
      661 gagaggcctg cgtgcaggcc gatgattatc gccaggccga tggtgcgtgc tcgtgcctgt
      721 agaaacattg cgtggctcca atggacgacc cagtgtaaca agcggctgct tggcggccac
      781 ctgctgtccg tagaaaaaaa ctgcgccata ctggaggccg aattggacag gagtgtgacc
      841 atgagcctct acgagatcgc cttcgccggg caggtggtgc cgggcgcgcc gctggagcag
      901 gtgcaggcga acctggcgcg gctgttccag gccgatgccc agcgcatcgc cctgctgttt
      961 tccgggcggc gcatcgtgat caagagcggc ctggatgccg ccggcgccga gaagtaccgt
     1021 gcgaccatgg agcgcgccgg cgccgtagcc atcgtccagg cgctggaggt cgaagaggtc
     1081 gagatggcgc cgccgcccgc tccggagccc gtggcgacac cgatggcgtc cccggctgcg
     1141 gcgccgatgc agcacggttc cgcccgggtg atcccgcgag atgaatacat ggcggcgttc
     1201 agtgatgtgc aggcgcccga cttcggcatc gccccggtcg gggccgatct gcaggacgcc
     1261 agggccgagg ctcaggcgcc gcaggtcgac ttctcgcaat tcagcctggc gccggtgggc
     1321 agcgacatgg gccaggccaa gggcgcaccg gccgcaccgc cgccggacac ctcgcacctc
     1381 aagctgcagg aatgagtaca gggcccgcga ttgcgggcct tgtagggtct ggcatcagct
     1441 tttgctggta gtgcacttgg cttcggcctg tggcggcgtc aggttgcgga ccgaggtgta
     1501 gaacagctcg caggtctgca ccttgtcggt cacctgccat ttctgcgtgc aggcattcag
     1561 cgtctgctgc gggtcagcac ccggattctg ccccatgccg gcctgccagc aggcggcact
     1621 gatgtcctgc cccatcacct tgagcccggc ggcgtcggcc ttggcctggt cgccaccgta
     1681 gttctccgga tcggccgcgt accagatgta gctcgggtgg ttggcgccga gcaccgggac
     1741 cttttgcccg ggcgccgggc tgatttcgtc cagacccagc acgccgatat tcgccccgta
     1801 ttgcttgttg acccaggtgc gtaccgggcc gccgaaggcg accatgggca gcgtcgcgcc
     1861 gtcgtccgcg gtgagttcgg cgaccatggt tttctggtag tcggtgaaat agtcgtagac
     1921 gccctccagg tcgctgccgg cgctggccgg ggcggcgatc ggggcgatgt cgatgatggt
     1981 ctggtaggcc ggcgtctgcg ccgccgccac gccgttttcg gtgagcagct cggcccagcg
     2041 atcggtggtc ttggactcca ggtagtcctg cgcctgggtc agcgaatagt ccggcgggaa
     2101 atgcagcagt tcgacgctct tgcggttctc cagcgccatg cccagaggca ggaagaagta
     2161 ccagctgtat tgccacttgc cgtcgccgtt gagcttgctg gcgccggtgt aggccaggtc
     2221 gccggcgttc agcaggtcgg tcagcgcctt gccgtagttg gccggcacac cgccgaagcg
     2281 ggcgctgagg gcctcgccat cgcggctgac ctcgaccgtg gctccgctga ggccgtcgcg
     2341 ctccaggctc tgcttcaggt agtgctcgac ggtctgctcc agtgtccagt cccggtagca
     2401 gatcacgctg cagttgttgg gataggcgaa caggcgggtg acccgctcgc tgctgcccag
     2461 atcgaccttt acatcatccg catgggcaga catggcgccc gcggacagca agacggccag
     2521 ggcggccgcc attccactgt gcttgtgcat ctacttctcc ttgttggccc ggtccccgcc
     2581 gggttctgcc aacaactgaa gcagagtttt agaaggtcag gtagccgctg cagcacttct
     2641 tgaatttctg cgcgctgccg caggggcagg ggtcgttgcg cccggccttg atgggcgcgg
     2701 tggggtcgag gaagtaccag cggccgtcgc gctggacgaa ggccgagcgt tcgcggtgcg
     2761 cgtgctcgcc agcgtcgtca tgccagcgcg cgatgaaggt gacgaaggcg tgctccggct
     2821 gcgcgccgat cagctcgctc gactccacgt cgagcccgag ccaggtgctg cccaggctcc
     2881 aggcgcggat gccgtccctg tcgagtgccg actgctgggc gggcagcgtg gtcgccacca
     2941 gataatcgac caggccgagc acgtaggcgc tgtagcgcga gcgcatcagg tgctcggcgc
     3001 tgggcgccgc ggcgccctgg tgatacgggc cgcagcagac gctcagctcg tcgccgctgc
     3061 cgcaggggca ggccggattc atggggtcac caccagaact t
//
LOCUS       DATIHC010000949         2015 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18331, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000949 DATIHC010000000
VERSION     DATIHC010000949.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2015
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18331"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..894
                     /locus_tag="VLF16_15800"
     CDS             <1..894
                     /locus_tag="VLF16_15800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016490095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2955 domain-containing protein"
                     /protein_id="HSX72396.1"
                     /translation="LLLGLTPRIDAHVIRQFLLQAVLVSLEVLVIYGLFGDRPQLVVP
                     LVFLAYLWRFRLMAQGPLFMFGALGSVFLSIQLHFASYPDTHLYDLVTSNLVAAGLTV
                     LIAWLMFFLFPDAEPRPPRQPQPKDVPSQRHEALLGASVATLSFMLFQSLDLRDSLSA
                     QVASILVLFPMHWNGIRFAGRIRALGTLLGCAIGLLLQLLLYSHYDVLPLVTLVYWTA
                     ALCCARIHVLEQAQGIGFGALTTLAIVFGQYLTPQHDVVYSIAYRLSSVCVAVFVTLV
                     AVFVLHRLLNRFPSLRHASHA"
     gene            959..1645
                     /locus_tag="VLF16_15805"
     CDS             959..1645
                     /locus_tag="VLF16_15805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017001431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSX72397.1"
                     /translation="MHNVLIAGASRGIGLGLTRASLERGDRVYAVARNPNGEALAELQ
                     RQYPERLIVIAGDLTAADVARPIEAALQAQTLDILLFNAGIMGPQHQDVAQATPDELA
                     ALFLTNAVAPMRLARQLAGRVRPGGVIAFMSSQMGSVALARSAEMPLYGASKAALNSL
                     LQSWDRSTERPQACLLALHPGWVRTDMGGDQATLDVATSAAGLLATLDAHLDANGCHF
                     LDYQQQPLPW"
     gene            1707..>2015
                     /locus_tag="VLF16_15810"
     CDS             1707..>2015
                     /locus_tag="VLF16_15810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017338046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72398.1"
                     /translation="MTLPPPLRQPCPPGACDCSRDQLLETPGADVRILLLTRSEEKRL
                     LERLENLQSLDDLRHLQQRMYQQLGIRVEVAPGFNEVRSMRGIAIDIAEHPGLCRKTR
                     Q"
BASE COUNT          281 a          768 c          638 g          328 t
ORIGIN      
        1 ctcctgctgg gcctcacccc gcgcatcgac gcccacgtga tccgccagtt cctgctgcag
       61 gcggtgctgg tgagcctgga agtactggtg atctacggcc tgttcggcga ccgcccgcaa
      121 ctggtggtac cgctggtgtt cctcgcctac ctgtggcgct tccgcctgat ggctcagggg
      181 ccgctgttca tgttcggcgc cctgggcagc gtgttcctct cgatccagct gcacttcgcc
      241 agctacccgg atacccacct gtacgacctg gtgaccagca acctggtggc cgccggcctg
      301 acggtgctga tcgcctggct gatgttcttc ctgttccccg acgccgagcc gcgcccgccg
      361 cgccagccac agcccaagga tgtgcccagc caacgccacg aggcactgct cggcgcgagc
      421 gtcgccaccc tgtcgttcat gctgttccag agcctggacc tgcgcgactc cctgtccgcc
      481 caggtcgcct cgatcctggt gctgttcccc atgcactgga acggcatccg cttcgccggc
      541 cgcatccgcg ccctcggcac cctgctcggc tgcgccatcg gcctgctgct gcagctgctg
      601 ctgtacagcc actacgacgt gctgccgctg gtgaccctgg tgtactggac cgccgcactg
      661 tgctgtgcgc gcatccacgt gctggaacag gcccagggca tcggcttcgg cgcgctcacc
      721 accctggcca tcgtcttcgg ccagtacctc acgccgcagc acgacgtggt ctactccatc
      781 gcctaccgcc tcagctcggt gtgcgtggcg gtgttcgtca ccctggtcgc ggtgttcgtc
      841 ctgcaccgcc tgctcaaccg cttcccgagc ctgcgccacg ccagccacgc ctgaggcggg
      901 caacatgaag ccggtctggg tatgatccgg gcaggtccga caagacacgg agcacagcat
      961 gcacaacgta ttgatcgccg gcgcctcgcg cggcatcggc ctgggcctga cccgcgccag
     1021 cctggagcgt ggcgaccggg tttacgccgt ggcgcgcaat ccgaacggcg aggcgctggc
     1081 cgagctgcag cggcagtatc ccgagcgcct gatagtgatc gccggcgacc tcaccgccgc
     1141 ggacgtcgcc cggcctatcg aggcggcgct gcaggcgcag acgctggaca tcctgctgtt
     1201 caacgccggc atcatgggcc cgcagcacca ggacgtggcg caggccacgc ccgacgagct
     1261 cgccgcgctg ttcctcacca acgccgtcgc gcccatgcgc ctcgcccgcc agctggccgg
     1321 acgggtgcgc cccggcggtg tgatcgcctt catgagttcg cagatgggca gcgtggccct
     1381 ggcgcgctcc gccgagatgc cgctgtacgg cgccagcaaa gcggcgctga acagcctgct
     1441 gcagagctgg gaccgctcca ccgagcgccc gcaggcctgc ctgctggccc tgcaccccgg
     1501 ctgggttcgc accgacatgg gcggcgacca ggccacgctg gacgtcgcca ccagcgccgc
     1561 cggcctgctc gcgaccctcg atgcgcatct ggatgccaac ggctgccatt tcctcgacta
     1621 ccagcagcag ccgctgccct ggtaggcgcc ggttcgtccg ttgccccttg cggggcggcg
     1681 cccgaacctg gctatgatcg cagcccatga ccctgccgcc accgcttcgc caaccctgcc
     1741 cgcccggtgc ctgtgactgc agccgcgacc agctgctgga aacgccgggc gcggacgtgc
     1801 gcatcctgct gctgacccgc agcgaggaga agcgcctgct ggaacgtctg gagaacctgc
     1861 agagcctgga cgacctgcgc cacctgcagc agcgcatgta ccagcagctc ggcatccgcg
     1921 tggaggtggc gccgggcttt aacgaggtgc gcagcatgcg cggcatcgcc atcgacatcg
     1981 ccgagcaccc gggcctgtgc cgcaagaccc gccag
//
LOCUS       DATIHC010000950         1507 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27770, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000950 DATIHC010000000
VERSION     DATIHC010000950.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1507
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27770"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..215)
                     /locus_tag="VLF16_15815"
     CDS             complement(<1..215)
                     /locus_tag="VLF16_15815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017676950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HSX72399.1"
                     /translation="MKLQFSLSALALATLLGGCQNMSPDAMLSTGMQAMQAATLSDAE
                     VKAMADEACVQMDAEAPIAPAGSEYSQR"
     gene            complement(341..811)
                     /locus_tag="VLF16_15820"
     CDS             complement(341..811)
                     /locus_tag="VLF16_15820"
                     /EC_number="1.20.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015477134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030612 - arsenate reductase (thioredoxin)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase ArsC"
                     /protein_id="HSX72400.1"
                     /translation="MRILFMCTANSCRSILSEALFNHLAPTGLEAVSSGSFPRGQVLP
                     RSLTTLEAAGIATAGLSSKGNDAFADCPPDIVITVCDKAAGEACPVWFGPALKAHWGL
                     ADPSDVQGSEEQITAAFQATLAHIERRCRAFLALPLTSLGRTELQRELERIGQL"
     gene            complement(837..>1507)
                     /locus_tag="VLF16_15825"
     CDS             complement(837..>1507)
                     /locus_tag="VLF16_15825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ArsB/NhaD family transporter"
                     /protein_id="HSX72401.1"
                     /translation="YDLDLLREPRLAIRDRATFRVGWCVLLALLLGLFALEPLGVPIS
                     LIAAACAAVLFAVAARGQVIATRRVLREAPWQVVVFSLGMYLVVYGLKNAGLTDQLSA
                     ILDRLAEHGLWAATLGTGLLTATLSSLMNNMPTVLVGAIAIDATQAEGVMREAMIYAN
                     VIGCDLGPKITPIGSLATLLWLHVLQRKGLRITWGYYFRVGILLTLPVLLITLSALAL
                     RLGA"
BASE COUNT          231 a          475 c          579 g          222 t
ORIGIN      
        1 cgctggctgt attcgctgcc tgctggagcg atgggggcct cggcgtccat ctgcacgcag
       61 gcctcgtcgg ccatggcctt cacttcggcg tcgctgaggg tggcggcctg catggcctgc
      121 atgccggtgc tgagcatggc gtcggggctc atgttctggc agccgccgag cagggtggcc
      181 agggccaggg cggaaaggga gaactgcagt ttcatggtca tcgtccttga aggtggaggc
      241 aatggaaggc cagaggcgtc ggcatccggc cggcgcggca ttttcgatga tcggggcggg
      301 agggggcgtg aagcgggtcg cagtccgcga cccatgcggc ctagagttgg ccgatgcgct
      361 ccagctcgcg ctgcagctcg gtgcgtccga ggctggtcag cggcagagcg aggaaggcac
      421 ggcagcgccg ctcgatgtgc gccagggtgg cctggaaggc tgcggtgatc tgctcctcgc
      481 tgccctgcac gtcggacggg tcggccaggc cccagtgggc cttgagcgcc gggccgaacc
      541 agaccgggca ggcctcgccg gcggccttgt cgcacacggt gatgacgata tccggcgggc
      601 agtcggcgaa ggcatcgttg cccttgctgc tcagccccgc cgtggcaatg ccggcggcct
      661 cgagggtggt caggctgcgc ggcagcacct ggccacgcgg gaagctgccg gagctgacgg
      721 cctccaggcc ggttggcgcc aggtggttga acagggcctc ggagaggatg ctgcggcagc
      781 tgttggccgt gcacatgaac aggattcgca tggtctctcc tccgctcgcg gcggcgtcag
      841 gcgcccaggc gcagggccag ggcggacagg gttatgagca gcaccggcaa ggtcagcagg
      901 atgccgaccc ggaagtagta gccccaggtg atgcgcaggc ccttgcgttg cagcacgtgc
      961 agccagagca gggtcgccag gctgccgatg ggggtgatct tcgggcccag gtcgcagccg
     1021 atgacgttgg cgtagatcat cgcctcgcgc attacgccct cggcctgcgt ggcgtcgatg
     1081 gcgatggcac cgaccagcac cgtgggcatg ttgttcatca gcgaggacag ggtcgcggtg
     1141 agcaggccgg tgccgagggt ggcggcccac aggccgtgtt ccgcgaggcg gtccagtatc
     1201 gcgctcagct ggtcggtcag gccggcgttc ttcaggccgt agaccaccag atacatgccc
     1261 agagagaaca ccaccacctg ccagggcgcc tcgcgcagta cccggcgggt ggcgatcacc
     1321 tggccgcgcg cggccacggc gaacagcacc gcggcgcagg cggcggcgat caggctgatc
     1381 ggcacgccca gcggctccag ggcgaacagc ccgagcagca gcgccagcag cacgcaccag
     1441 ccgacgcgga aggtggcgcg gtcgcggatg gccaggcgtg gctcgcgcag caggtcgagg
     1501 tcatagc
//
LOCUS       DATIHC010000951         5327 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_16096, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000951 DATIHC010000000
VERSION     DATIHC010000951.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5327)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5327
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16096"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1389)
                     /locus_tag="VLF16_15830"
     CDS             complement(<1..1389)
                     /locus_tag="VLF16_15830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008002539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HSX72402.1"
                     /translation="MLGLMQDHPLLISSVLEHALRCHPDGQIASRTVEGPLHHCTYAD
                     VGRRAKQMANALTRLGMAPGERVGTLAWNGYRHLELYFAVSGMGAVLHTINPRLFPEQ
                     IEFIVRHAEDRVLFFDLSFAALVEQLAPHLPGVQAFVAMTERRHMPDIQVPRLLCFEE
                     LIADESEHFAWPSFDERLASSMCYTSGTTGNPKGVLYSHRSSLLHSMALCTREGFGLS
                     SVDSALLVVPMFHVNAWGMPYACAMSGAKLVLPGPALDGASLYELMRSERVTLALGVP
                     TVWMMLQQHVEAEGLAPTADLCLQRVVIGGAAAPRSQVERFERDFDTRVMHAWGMTEM
                     SPLGTLCAPLPKHAGADLEARLDLQAKQGRALFGVTMKVVDDDGVELPRDGRSAGHLL
                     VKGPWIASHYYRQAETILDAEGWFDTGDVATIDADGYMQITDRAKDVIKSGGEWISSI
                     DLENAAMGHPAVA"
     gene            1667..2164
                     /locus_tag="VLF16_15835"
     CDS             1667..2164
                     /locus_tag="VLF16_15835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72403.1"
                     /translation="MDIFAAIYGTFASAFAGDGQSIALLGALYVCAVMLSTAIYLWLI
                     WQWPSTRGQLLAQGVAPFGATELVPAQQNHVAKVAYCYEVDGHTYTGNRLSPWKVMAS
                     TNARFVLQTQLRGIQMDESGGVTVFYNPRKPARSYLIRSGPIKQALTLLSAIAPVALY
                     LWVYR"
     gene            complement(2672..2986)
                     /locus_tag="VLF16_15840"
     CDS             complement(2672..2986)
                     /locus_tag="VLF16_15840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72404.1"
                     /translation="MSKHNVTGWERAFSLAVGIAGVGKGVRRGGISGCLEIAVSLLAL
                     KRGLTGECAMKRALAHASEQAGSTGWRSTRGETAELGVPGGAYNLSPRDAAAMTRGAG
                     RS"
     gene            3223..3549
                     /locus_tag="VLF16_15845"
     CDS             3223..3549
                     /locus_tag="VLF16_15845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014595510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72405.1"
                     /translation="MVIHYFASPENAACGRTGPSLNGSQELAQVSCKLCLRSLEKNAA
                     APVRKTPSLAELRAAAKAEKAAAAVAERAQPATSPSPRLEWQRRLEQLPGRNRLPRGK
                     ARQAFI"
     gene            complement(3619..3975)
                     /locus_tag="VLF16_15850"
     CDS             complement(3619..3975)
                     /locus_tag="VLF16_15850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014852633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgaP-like transmembrane domain"
                     /protein_id="HSX72406.1"
                     /translation="MKGIGSWPKGPSMNVQGWERGASVGGGLALIGFGLRRGGLLGLL
                     GAAAGGLLLARGVAGHCALKEALHEPPLPEPADKARYAHMPLDSEVHSADFEMQRELP
                     DTTPMGHETHVRPRQV"
     gene            4209..5210
                     /gene="dusA"
                     /locus_tag="VLF16_15855"
     CDS             4209..5210
                     /gene="dusA"
                     /locus_tag="VLF16_15855"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003239920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0002943 - tRNA dihydrouridine synthesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HSX72407.1"
                     /translation="MKHEHNDSTTRPLSRRFSVAPMMDWTDRHCRYFLRQLSSQALLY
                     TEMVTTGALLHGDAGRFLRYHDCEHPLALQLGGSTPADLAACARMAQEHGYDEVNLNV
                     GCPSDRVQNNMIGACLMAHPRLVADCVKAMQDAVSIPVTVKHRIGINGRDSYAELCEF
                     VGTVREAGCTSFTVHARIAILEGLSPKENREIPPLRYDVAAQLKRDFPELEIILNGGI
                     KTLEECQAHLTTFDGVMLGREAYHNPYLLAQVDQQLFGLDTPVISRAEALTRMRPYIE
                     RHLAEGGAMHHITRHVLGLAQGFPGARRFRQLLSVDVHKTQAPLALLDQAIELLAGH"
BASE COUNT          914 a         1872 c         1698 g          843 t
ORIGIN      
        1 ggccacagcc gggtggccca tggcggcatt ttccaggtcg atggaggaaa tccactcgcc
       61 gcccgacttg atcacgtcct tggcgcggtc ggtgatctgc atgtagccgt cggcatcgat
      121 agtggccacg tcgccggtgt cgaaccagcc ctcggcatca aggattgtct cggcctggcg
      181 gtagtagtgg ctggcgatcc acggcccctt caccagcaga tgcccagccg agcggccgtc
      241 gcggggtagc tcgacgccgt cgtcgtcgac caccttcatg gtcacgccga acagcgcccg
      301 gccctgcttg gcctgcagat cgagacgcgc ctcgaggtcg gcaccggcgt gcttgggcag
      361 cggcgcgcag agggtgccca gcggcgacat ctcggtcatg ccccaggcgt gcatcacccg
      421 ggtgtcgaag tcccgctcga agcgctcgac ctggctgcgc ggagccgccg ccccgccgat
      481 caccacccgt tgcaggcaca ggtctgcggt gggcgccaga ccctcggcct cgacgtgctg
      541 ctgcagcatc atccacaccg tcggcacgcc cagcgccaag gtcacgcgct cgctgcgcat
      601 cagctcgtag aggctcgcac cgtccagcgc cggccccggc agcaccagct tggcgccgct
      661 catggcgcag gcgtacggca tgccccaggc gttgacgtgg aacatgggca ccaccagcaa
      721 cgccgagtcc acagaagaca ggccgaagcc ctcgcgggtg cacagcgcca tcgaatgcag
      781 caacgaggag cgatgggaat acagcacgcc cttgggattg ccggtggtgc cggaggtgta
      841 gcacatggac gacgccaggc gttcgtcgaa gctcggccag gcgaagtgct cgctctcgtc
      901 ggcgatcagc tcctcgaagc acagcagtcg gggcacctgg atgtccggca tgtggcggcg
      961 ctcggtcatc gccacgaacg cctgcacacc gggcaggtgc ggcgccagtt gttcaaccag
     1021 cgcggcgaag ctcaggtcga agaacagcac gcggtcctcg gcatggcgga caataaattc
     1081 gatctgctcg ggaaacagcc gcgggttgat ggtatgcagc acggcgccca tgccggacac
     1141 ggcgaaatac agctccaggt gccggtagcc gttccaggcc agggtgccga cgcgctcgcc
     1201 cggcgccatg ccgagccggg tcagggcatt ggccatctgc ttggcgcggc ggccgacatc
     1261 ggcgtaggtg cagtgatgca gggggccctc gaccgtgcgc gaggcgatct gcccgtccgg
     1321 gtggcagcgc agggcatgct cgagcaccga ggaaatgagt aaggggtggt cctgcatcaa
     1381 accaagcacg gcgtcgctcc attgctcttg taaggaaggg ccaccgcggc gcaggcggag
     1441 cccgcgccgc ggcacgggca aaacataggg tcggccggct cgcctccccc cccctgcgac
     1501 gaggggggcg ccggaagcgg gctagtcgag acgcacgacg tgcggcgggt catcgaggat
     1561 cgagggattc tgcgcgctcg gccagtacat gccgccgtgc ccgcctattc tccggaatgc
     1621 agcgggccgg tagcatggcg ccattcattt gcgcagggcg gcaggcatgg acatcttcgc
     1681 agcgatctac ggcaccttcg cctcggcctt cgccggtgac ggccagagca tcgcgctgct
     1741 cggggcgctg tacgtctgcg cggtgatgct gtccacggcc atttatctct ggctgatctg
     1801 gcagtggccg agcacccgcg gccagctgct cgcccagggc gtcgcgccgt tcggggcgac
     1861 cgagctcgtc ccggcccagc agaaccacgt ggccaaggtg gcctactgct acgaggtgga
     1921 cgggcacacc tacaccggca atcgtctctc gccctggaag gtcatggcca gcaccaatgc
     1981 gcgcttcgtg ttgcagaccc agctgcgcgg catccagatg gatgaatccg gcggggtcac
     2041 ggtgttctac aacccgcgca aacctgcacg cagctacctg atccgctcgg gaccgatcaa
     2101 gcaggcgctg acgctgctgt ccgccatcgc gccggtcgcg ctgtatctct gggtctatcg
     2161 ctgaggagca gccgcctcga ctcagtgaga ggacacgtag atcgtcccgg cgaacggcgc
     2221 cggaatggcc gaagtgctca ccgatggaac tttgcagccg tttcgccgct cagttccttg
     2281 ccacgcctgg ctgatcgcgg cgcctcgcgc cagatcggct cggctggcaa cgagccccgg
     2341 cggactgcat gcagcctgcc ggcgatacca cacacgagac ctcgtcactc gacacgagca
     2401 acccttatgg ccactccaat catctgccgg acctaccggc gccccatcca tcagtgcaac
     2461 tgctatcgct gccgccccgt cggctcgacc gagcctctgg cgtcccgcct gacggaacag
     2521 tcttcgaaca aaaatctgtc gctgcgctag cacccggtgc taccgacgca tcgtcggcag
     2581 gcattgggcc gcctgcgcag cccctacctc gcataggcgt cgtatcagcc tacgatggga
     2641 gacccagggc acaggcaggt ggtcgtgaca ctcaggagcg ccccgcccca cgggtcatgg
     2701 ccgcggcatc cctcgggctg aggttgtagg cgccgcccgg taccccgagc tcggcggttt
     2761 ccccgcgcgt ggaacgccat ccagtcgatc ccgcttgttc cgatgcgtgc gcaagggcgc
     2821 gcttcatggc gcattcgccc gtcagcccgc gcttcagcgc cagcaatgaa accgcgatct
     2881 ccaggcatcc ggagatgccg ccacgcctga cgcccttgcc gacgccggca atcccgacgg
     2941 ccagcgaaaa tgcgcgctcc cagcccgtta cgttgtgctt gctcatgaat cttgcctctc
     3001 gttcgatccc gccgtggcgt gcgggttgtc aggacatcgc cacgttgcct gtacccgcca
     3061 ggccttacga gtgactcgac cgcgcgcttc atagttcatg ccgcggcccg gacgggattt
     3121 agtagcggaa ccgctctcgc cgggtcgttc cagccgattt ttctgctgct tttgcgaggc
     3181 gactgtgtag aatcccgcgc ccgaaaatca ggagacatta cgttggtcat tcattacttc
     3241 gcgtccccgg agaatgcggc atgcgggcgc accggcccga gtctcaacgg cagccaggag
     3301 ctggcccagg tttcatgcaa gctgtgcctg cgcagcctcg agaagaacgc cgcggcgcct
     3361 gtgcgcaaga cgcccagcct cgccgagctg agggctgcgg ccaaggccga gaaggccgca
     3421 gcggccgtcg ccgaacgggc gcaacccgct acctcgccat cgccccgcct cgaatggcag
     3481 cgccgcctcg aacaattgcc ggggcgcaat cgcctgcctc gcggcaaggc gcggcaagcc
     3541 ttcatctagc cagacggcac atcgatcagc ggtgaagcat cctggcgacg cttctcaccg
     3601 ccaccggaaa ccgaccgttc acacctgccg gggacggaca tgggtctcat gccccatcgg
     3661 cgtggtgtcg ggcagttcgc gctgcatttc gaagtcggcg ctgtgcacct ccgagtccag
     3721 cggcatgtgg gcataacgtg ccttgtccgc cggctcgggc agcgggggct cgtgcagcgc
     3781 ctccttcagc gcgcaatggc cggcgacgcc gcgtgcgagc agcaggccgc cggcggccgc
     3841 gcccagcagc cccagcaggc cgccgcggcg cagtccgaag ccgatcagcg ccagtccgcc
     3901 gcccaccgaa gcgccgcgct cccaaccctg cacattcatc gaagggcctt tcggccagga
     3961 accgatacct ttcatgctca cctctcatcc gggattcgag ataggtgacc gacacggcgc
     4021 cgggacgttc gccctatctg actcggcgcc ggccactccg ccctgcgtcg acaacgagat
     4081 atcgctcatg gcgggcgagc gataaaatcg ccccattgca tcgaagggag cggctcgcgg
     4141 cgcatcggcc atcgcgccgg catcgcgtct cgactcccga ctcacttttc ggatcgctca
     4201 gatttctcat gaagcacgaa cacaacgact caaccacacg cccgctttcg cgcagattca
     4261 gcgtggcccc gatgatggac tggaccgacc gtcattgccg gtactttctg cgtcagctgt
     4321 ccagccaggc gctgctctac accgagatgg tcaccaccgg tgcgctgctg catggcgacg
     4381 ccggtcgctt cctgcgttac cacgactgcg agcacccgct ggccctgcaa ctgggcggca
     4441 gcaccccggc cgacctggca gcctgcgcgc gcatggccca ggagcacggc tacgacgagg
     4501 tcaacctgaa cgtcggctgc cccagcgacc gggtgcagaa caacatgatc ggcgcctgcc
     4561 tgatggccca cccccgactg gtcgccgact gcgtgaaggc gatgcaggac gcggtgagca
     4621 ttccggtgac ggtgaagcac cgcatcggca tcaatggccg ggacagctac gccgagctgt
     4681 gcgaattcgt cggtacggtg cgcgaggccg gttgcaccag cttcaccgtg cacgcgcgca
     4741 tcgccattct cgagggcctt tcgcccaagg aaaaccgcga gattccgccg ctgcgctatg
     4801 acgtggcggc gcagctcaag cgtgatttcc ccgagctgga gatcatcctc aacggcggca
     4861 tcaagaccct ggaggagtgc caggcgcatc tgacgacctt cgacggcgtg atgctcggcc
     4921 gcgaggcgta ccataatccc tacctgctgg cgcaggtcga ccagcagctg ttcggcctgg
     4981 atacgccggt gatcagccgc gccgaggcac tgacccgcat gcgcccctac atcgagcgcc
     5041 acctggccga gggcggcgcc atgcaccaca tcacccgcca cgtgctgggg ctggcccagg
     5101 gcttcccagg tgcccgccgc ttccgccagc tgctgtcggt ggacgtgcac aagactcagg
     5161 cgccgctggc actgctcgac caggccatag aactgctcgc cggccactga aaagcccgca
     5221 ccagacgttg aagcggcccg cgcggctcgg gtaaggtcga ggcaggtaaa agacagggcc
     5281 tcgtcatgac ttccaagctg gaccaactca agcagttcac caccgtg
//
LOCUS       DATIHC010000952         3966 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18342, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000952 DATIHC010000000
VERSION     DATIHC010000952.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3966
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18342"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..536
                     /locus_tag="VLF16_15860"
     CDS             <1..536
                     /locus_tag="VLF16_15860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020308402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="solute carrier family 23 protein"
                     /protein_id="HSX72408.1"
                     /translation="VIAVGTVTGKDFVRKPGLHRTLLGDGLATSAAGLFGGPPNTTYA
                     EVTGAVMLTKSFNPKVMTWAAIFAISLAFIGKFGAALQAIPVPVMGGILCLLFGSIAV
                     VGLNTLIRHQVDLSEARNLVIVSVTLVFGIGGMVIGGKSFALSGISLCAISALALNLL
                     LPGGNAWRRHPPIDPEI"
     gene            704..2191
                     /locus_tag="VLF16_15865"
     CDS             704..2191
                     /locus_tag="VLF16_15865"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009614973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HSX72409.1"
                     /translation="MSVEDLDVLIVGAGLSGIGAACHLRRECPDKRLAILEGRAAMGG
                     TWDLFRYPGIRSDSDMYTLGYSFRPWTDPQSIADGPSIRRYIEDTASEHGVDTLIRYR
                     HRVLRAEWDSVEALWTLHVRRGDEAEPLQLRSRILVLCTGYYRYEAGYTPDFPGRERF
                     AGRFIHPQHWPQDFDPSGKRILVIGSGATAVTLVPALAEQAASVTMLQRSPTYVINLP
                     QHDRLLAALRRRLPATWVYRLARTRNVAFQMLFYNLARVCPGLVRRMLLGLARRQLGE
                     DFDMRHFSPRYNPWDQRVCAVPDGDLFKALRSGRAEVVTDEIETFTEHGVQLRSGREL
                     QADSIVSATGLELQLFGGLQLVVDGRPFVVSESMGYRGLMLRDLPNAAVILGYTNASW
                     TLKADLSSQYLCRLIRHMDALGMRQVTPRQHGEVGKAPFLDLQSGYIHRAAHLLPSQG
                     DRMPWKVYQNYLLDLAMLRHGRLEDGSLEFSSPHPARRDEMALTD"
     gene            complement(2188..3252)
                     /locus_tag="VLF16_15870"
     CDS             complement(2188..3252)
                     /locus_tag="VLF16_15870"
                     /inference="COORDINATES: protein motif:HMM:NF020039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HSX72410.1"
                     /translation="MRKLLLIAMLAVLAYLLFWPTPLRPVAWQPQPVPEAEGVWAPNG
                     RLDGAVLEQSGLDGPDTVVVDGEGRRYSGVGDGRILRWRAGEAAQTFVRLAGRPVGMN
                     FGPDGSLYAADEANAKVWRVTPEGRAEVLVQSDARRRFTFLNDVFVARDGRLFFTEAS
                     SRWGLADNKRALLEHGGDGGVFVRYPDGRIERVMDGLQFANGVVLSPDESYLLVAETG
                     AYRITRLWLGGARAGRREVLVDNLPGFPGDLSVAPDGSYWCSFFSPRKAVLDALAPWP
                     LLRKVASRLPPALLARPSRYPHVFRFDGEGRVLESLQASPGSELPSFSSVVQVGSELL
                     LGTPGGVGEIDADRAYRVAL"
     gene            3460..>3966
                     /locus_tag="VLF16_15875"
     CDS             3460..>3966
                     /locus_tag="VLF16_15875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011920631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HSX72411.1"
                     /translation="MTTRRRFIQHASALAALATLGPLSGLAQAAASGELLRRKIPSSG
                     ELLPVVGLGTSRTHDVPLDEEHLAPLREVFATLIEGGGSLVDTAPSYGRAEAVCGELA
                     AGNVRPRLFLATKVSSSGREAGRRQIEQSFRDLQTERIDLIQVHNLQDTETQLQLLRE
                     LKEQGKVRY"
BASE COUNT          595 a         1525 c         1277 g          569 t
ORIGIN      
        1 gggtgatcgc ggtcggcacc gtcaccggca aggacttcgt gcgcaagccc ggcctgcacc
       61 gcaccctgct cggcgacggc ctggccacct cggccgccgg cctgttcggc ggcccgccca
      121 acaccaccta tgccgaagtc accggcgcgg tgatgctgac caagagcttc aaccccaagg
      181 tgatgacctg ggcggcgatc ttcgccatct ccctggcctt catcggcaag ttcggcgcgg
      241 cgctgcaggc catcccggta ccggtgatgg gcggcatcct ctgcctgctg ttcggctcca
      301 tcgccgtggt cggcctgaac acgctgatcc gccaccaggt cgacctgtcc gaggcgcgca
      361 acctggtgat cgtctcggtg accctggtgt tcggcatcgg cggcatggtc atcggcggca
      421 agagcttcgc cctgtccggc atctccctgt gcgccatcag cgccctggcg ctgaacctgc
      481 tgctgccggg cggcaacgcc tggcgcaggc acccgccgat cgatcccgag atctgatcgc
      541 ccaggccccg ctcgcggggc cttttcattt ccgccggtcg cccctttggc gctttcgcca
      601 tcatcgccgc ccccacgtcg cgcccgtccg atgtcatgct gcctgggcct gccccaccgc
      661 cgggttggct aggcttgctg cagccatcac acgaggagcc cgcatgtccg tcgaagacct
      721 ggatgtcctg atcgttggcg ccggcctgtc cggcatcggc gccgcctgcc acctgcgccg
      781 cgaatgcccg gacaagcgcc tggccattct cgaggggcgc gccgccatgg gcggcacctg
      841 ggacctgttc cgctaccccg gcatccgctc cgactcggac atgtacaccc tgggctacag
      901 cttccgcccc tggaccgatc cgcagtccat cgccgacggc ccgtcgatcc gccgctacat
      961 cgaagacacc gcgagcgagc atggcgtcga cacgctgatc cgctaccgcc accgggtgct
     1021 gcgcgccgaa tgggacagcg tcgaggcgct atggaccctg cacgtgcgcc gcggcgacga
     1081 ggccgaaccg ctgcaactgc gcagccgcat cctggtgctg tgcaccggct actaccgtta
     1141 cgaggccggc tacaccccgg actttcccgg ccgcgagcgc ttcgccggcc gcttcatcca
     1201 cccgcagcac tggccgcagg acttcgaccc cagcggcaag cgcatcctgg tgatcggcag
     1261 cggcgccacc gccgtgaccc tggtgccggc gctggccgag caggccgcca gcgtcaccat
     1321 gctgcagcgc tcgccgactt acgtgatcaa cctgccccag cacgatcgcc tgctcgcggc
     1381 gctgcgccgg cggctgccgg ccacctgggt ctatcgcctg gcacgcacgc gcaacgtggc
     1441 gttccagatg ctcttctaca acctggccag ggtctgcccc ggcctggtcc ggcgcatgct
     1501 gctcggcctg gcgcggcgtc agctgggcga ggacttcgac atgcgccact tcagcccgcg
     1561 ctacaacccg tgggaccagc gggtctgcgc ggtgcccgac ggcgacctgt tcaaggcact
     1621 gcgcagcggc cgcgccgagg tggtcaccga cgagatcgag accttcaccg agcacggcgt
     1681 gcaattgcgc tcgggccgcg agctgcaggc cgattccatc gtcagcgcca ccggcctgga
     1741 actgcagctg ttcggcggcc tgcaactggt ggtcgacggc cgccccttcg tggtgtcaga
     1801 gagcatgggc taccgcggcc tgatgctgcg cgatctgccc aacgccgcgg tgatcctcgg
     1861 ctacaccaac gccagctgga cgctcaaggc cgacctgtcc agccagtacc tgtgccgcct
     1921 gatccgccac atggacgcgc tcggcatgcg ccaggtgacg ccgcgccagc acggcgaggt
     1981 gggcaaggcg ccgttcctcg acctgcaatc cggctacatc caccgcgccg cccacctgct
     2041 gcccagccag ggcgaccgca tgccgtggaa ggtctaccag aactacctgc tggacctggc
     2101 catgctgcgc cacggccgcc tcgaggacgg cagcctggag ttcagctcgc cgcaccccgc
     2161 gcggcgcgac gagatggcgc tgaccgacta gagcgcaacg cggtaggcgc gatcggcatc
     2221 gatctctccc accccgcccg gcgtgccgag cagcagctcg ctgcccacct gcaccacgct
     2281 gctgaagctg ggcagctcgc tgcccggcga agcctgcagg ctctccagca cgcggccctc
     2341 gccgtcgaag cggaacacgt gggggtagcg gctgggccgc gccagcagcg ccggcggcag
     2401 gcgcgaggcg accttgcgca gcaatggcca gggcgccagc gcgtcgagca cggccttgcg
     2461 cggcgagaag aacgagcacc agtagctgcc gtccggggcg acggacagat cgccgggaaa
     2521 gcccggcaga ttgtccacca gcacctcgcg ccgcccggcc cgcgcgccgc ccagccacag
     2581 gcgggtgatg cgataggcgc cggtctcggc gaccagcagg taggattcgt ccgggctcag
     2641 taccacgccg ttggcgaact gcagaccgtc catcacgcgc tcgatgcgcc catccgggta
     2701 acgcacgaac accccgccat caccgccgtg ctccagcagc gcccgcttgt tgtcggccag
     2761 gccccagcgg ctggaggcct cggtgaagaa caggcgaccg tcacgggcga cgaacacatc
     2821 gttgagaaag gtgaagcgcc gccgggcatc gctctgcacc agcacctcgg cgcggccctc
     2881 gggcgtcacc cgccagacct tggcgttggc ctcgtccgcc gcgtacaggc tgccgtccgg
     2941 gccgaagttc atgcccaccg ggcggccggc cagacgcacg aaggtctgcg ccgcctcgcc
     3001 cgcgcgccag cgcaggatgc gtccgtcgcc cacgccgctg tagcgccggc cttcgccgtc
     3061 caccaccacg gtgtccggcc catccaggcc ggactgctcc agcactgctc cgtccagccg
     3121 gccattcggc gcccacacgc cctcggcctc cggcaccggc tgcggctgcc aggccaccgg
     3181 ccgcagcggc gtgggccaga acagcaggta agcgagcacc gcgagcatcg cgatcagcag
     3241 cagcttgcgc atggcgatct tccttattgt cgttgtgctc gcagcctaat ccagacccgc
     3301 tccggggcgc aggtccggcc gcgccaaagc actggccttg ccacccggca acggacaata
     3361 ggggcgccgc tggtttggtt accggatatt gccccggcac cccatggccg gcaggagggt
     3421 ctatcacttg ctgatcgcca accgcccggg agacccgcca tgaccacgcg ccgccgcttc
     3481 attcagcacg cctccgccct cgccgcgctg gccaccctcg gaccgctgtc cggcttggcc
     3541 caggccgcgg cgagcggcga gctgctgcgc cgcaagattc cctccagcgg cgaactgctg
     3601 ccggtggtcg gcctgggcac atcgcgcacc cacgacgtgc cgctcgacga ggaacacctg
     3661 gcgcccctgc gcgaagtgtt cgccaccctg atcgaaggcg gcggcagcct ggtcgatacc
     3721 gcgcccagct acggccgcgc cgaggcggtg tgcggcgagc tggcggcggg caatgtgcgg
     3781 cctcgcctgt tcctcgccac caaggtctcc tccagcggcc gggaagccgg ccggcggcag
     3841 atcgagcaaa gcttccgcga cctccagacc gagcgcatcg acctgatcca ggtgcacaac
     3901 ctgcaggaca ccgagaccca gctgcagctg ctgcgcgagc tcaaggaaca gggcaaggtg
     3961 cgctac
//
LOCUS       DATIHC010000953         5315 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_39164, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000953 DATIHC010000000
VERSION     DATIHC010000953.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5315)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5315)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5315
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39164"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(34..396)
                     /locus_tag="VLF16_15880"
     CDS             complement(34..396)
                     /locus_tag="VLF16_15880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HSX72412.1"
                     /translation="MHIDQIVDFASAGTAPEHYRPAAEKVLKGDPEQSVRNHYGSPCG
                     QFNVGIWEGAAGQWTIHYTEHEYCEILQGVSVIRDQDGNAKTVRAGDRFVIPAGLKGT
                     WEVLEPCRKVYVIFEAKA"
     gene            611..2104
                     /locus_tag="VLF16_15885"
     CDS             611..2104
                     /locus_tag="VLF16_15885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HSX72413.1"
                     /translation="MTTLTRADWEQRAKSVKIEGRAFVQGEYTDAVSGATFECISPVD
                     GRLLGLVASCDTADAERAVQVARAAFESGVWSRLAPVERKKVMIRFADLIEAHAEELA
                     LLETLDMGKPIGDSLSVDVPAAARAIRWSGEAIDKIYDEVAATAHNELGLVTREPVGV
                     VAAIVPWNFPLLMTCWKLGPALSTGNSVVLKPSEKSPLTGIRIAQLAIEAGIPAGVFN
                     VLPGFGHTVGKALALHMDVDTLVFTGSTKIAKQLMIYAGESNMKRVWLEAGGKSPNIV
                     FADAPDLQAAAEAAASAIAFNQGEVCTAGSRLLVENSIKDKFVPMVVEAIKAWKPGNP
                     LDPATNVGALVDTTQMNNVLSYIQAGHDDGAKLVAGGKRVLEETGGTYVEPTVFDGVS
                     NAMRIAKEEIFGPVLSVIGFDSVEEAVTIANDTVYGLAAGVWTSNLSRAHLVGKALRA
                     GSVWINQYDGGDMTAPFGGFKQSGNGRDKSLHAFDKYTELKATWIKL"
     gene            2254..3396
                     /locus_tag="VLF16_15890"
     CDS             2254..3396
                     /locus_tag="VLF16_15890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009614113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSX72414.1"
                     /translation="MRWGTYFAVCAAVISIGLALGVTMPLVSLRLEGWGHGNFAIGVM
                     AATPAVGVLLGSLVAGRLAARLGTTLVMQLCLLLGALSVALLALVQHYPVWLGLRLFL
                     GVALTVVFILGESWINQLAVEKWRGRLVALYGTGYALSQLAGPLLLTLLGTDTDLGFW
                     TGTGLLIFGSLALLGRTGAPRVDAHSASGRGLFDFCRRMPTIAWAVGLFAAFEAMMLT
                     LLPVYGLQQGFSQDVALLMASVVVVGDAALQLPIGWLADRLPRSSLFRACGLVLLLSS
                     LSVPMLLHTPLIWPLWVLFGASAGGLFTLSLILIGERFRDDELVRANAHVAQLWGLGC
                     LVGPLLTGAASQWLSGHALPLVMAVGAAGFVWLAWRDKAGLPAVER"
     gene            complement(3439..4929)
                     /locus_tag="VLF16_15895"
     CDS             complement(3439..4929)
                     /locus_tag="VLF16_15895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020291978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D family protein"
                     /protein_id="HSX72415.1"
                     /translation="MPIHPSQTLPPSESSFGRHLLDLAARHKGKSGFRLLPASDEAFA
                     ARAELIRAAQSSLDLQYYIVHDGLSTRTLIDEVLRAADRGVRVRLLLDDTSSDGRDYE
                     IALLAAHPNIQVRVFNPLHLGRSTGVTRLLGRALNLGQQHRRMHNKLWLADGSAAIVG
                     GRNLGDEYFDAKPNRNFTDIDMLAVGPVADQLAHSFDQYWNSALSKPIQQFLRWPPDE
                     RDLAKARQRLRGYLAQARVEQRELSERLQAYRDDPRLYRWLNELIWAPGWALWDAPSK
                     VLADGEPDPQLLLASQLEPKLEGLEHELILVSAYFVPAEDGMRYLTGHADRGVNIRLL
                     TNSLEATDVPAVHGGYAPYRRELLEHGVRLFELRRQPDGNGSGGSGPYSFSGSSESSL
                     HSKAIVLDRRYAFVGSLNFDPRSLLWNTEVGVLVDSPKLSERVRELALEGMQPSLSYE
                     VRLVDGQMRWRVEDDGKLHELTREPGSAWRRFNAWFADLVGLERML"
     gene            complement(5045..>5315)
                     /locus_tag="VLF16_15900"
     CDS             complement(5045..>5315)
                     /locus_tag="VLF16_15900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010447921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSX72416.1"
                     /translation="YFPAGTRVSQPQGGFMLWVEMPQGFDSQRLNRLLAPHKVQVAPG
                     SIFSAAGKYRNCLRMNFATAQGGALEQAVRRVGETVGELLAEHST"
BASE COUNT          768 a         1755 c         1872 g          920 t
ORIGIN      
        1 ccgctttcaa cgcagcatgg ccttgggtga acttcaggcc ttggcctcga agatcacata
       61 gaccttgcgg cagggctcca gcacttccca ggtgcccttg agcccggcgg gaatgacgaa
      121 gcggtcgccg gcgcgcacgg tcttggcgtt gccgtcctgg tcgcggatca ccgacacgcc
      181 ctgcaggatc tcgcagtact cgtgctcggt gtagtgaatg gtccactggc ccgccgcgcc
      241 ttcccagatg ccgacgttga actggccgca aggactgccg tagtggttgc gcacgctctg
      301 ctcggggtcg cccttgagca ccttctcggc ggcggggcgg tagtgctcgg gcgcggttcc
      361 ggcgctggcg aagtcgacga tctggtcgat gtgcatggcg gcatcctgtg gtctggaggg
      421 gtaatcgcgg cagtctatgt ttgataaaac gaacattgca aggcgctgtt cgccgttctg
      481 tcaaaaatat tgaaaatgcc gagcgctctg gtttagtgtg gcggcacatt ccggccggca
      541 atcggcctga cagaataatt gacagtgcgt gttgtcgatt tgccacacgc ttccaccgag
      601 gactccttgc atgactacct tgacccgtgc cgactgggaa cagcgcgcca agagcgtgaa
      661 gatcgagggc cgcgccttcg ttcagggcga gtacaccgat gcggtttccg gcgccacctt
      721 cgagtgcatc agcccggtcg acggtcgtct gctcggcctg gtggccagtt gtgataccgc
      781 cgacgccgag cgcgccgtgc aggtcgcgcg cgccgccttc gagtccggcg tgtggtcgcg
      841 cctggcgccg gtcgagcgca agaaggtcat gatccgcttc gccgacctga tcgaggccca
      901 cgccgaggaa ctggccctgc tggagaccct ggacatgggc aagccgatcg gcgactcgct
      961 gagcgtcgac gtgccggccg ccgcgcgcgc catccgctgg agcggcgagg ccatcgacaa
     1021 gatctacgac gaagtggccg ccactgccca taacgagctg ggcctggtca cccgcgagcc
     1081 ggtcggcgtg gtcgccgcca tcgtgccgtg gaacttcccg ctgctgatga cctgctggaa
     1141 gcttggcccg gcgctgtcta ccggcaactc cgtggtcctc aagccgtccg agaagtcgcc
     1201 gctgaccggc atccggatcg cccagctggc catcgaggcc ggcattccgg ccggcgtgtt
     1261 caacgtgctg ccgggcttcg gccacaccgt cggcaaggcc ctggctctgc acatggacgt
     1321 cgataccctg gtgttcaccg gttccaccaa gatcgccaag caactgatga tctacgccgg
     1381 cgaatcgaac atgaagcgcg tctggctgga ggccggcggc aagagcccga acatcgtctt
     1441 cgccgatgcc cccgacctgc aggcggccgc cgaggccgcg gccagcgcca tcgccttcaa
     1501 ccagggcgag gtgtgcaccg ccggctcgcg cctgctggtg gagaactcga tcaaggacaa
     1561 gttcgtgccc atggtggtcg aggcgatcaa ggcgtggaag ccgggcaacc cgctggaccc
     1621 ggcgaccaac gtcggtgcgc tggtcgacac cacgcagatg aacaacgtgc tcagctacat
     1681 ccaggccggc cacgacgacg gcgccaagct ggtcgccggc ggcaagcgcg tgctggaaga
     1741 aaccggcggc acctatgtcg agccgaccgt gttcgacggc gtgagcaacg ccatgcgcat
     1801 cgccaaggaa gagatcttcg gcccggtgtt gtcggtgatc ggtttcgaca gcgtcgagga
     1861 agccgtgacc atcgccaacg ataccgtcta cggcctggcc gccggcgtgt ggaccagcaa
     1921 cctgtcgcgc gcccacctgg tcggcaaggc cctgcgcgcc ggcagcgtgt ggatcaacca
     1981 gtacgacggc ggcgacatga ccgcgccgtt cggtggcttc aagcagtccg gcaacggccg
     2041 cgacaagtcg ctgcacgcct tcgacaagta caccgagctg aaggctacct ggatcaagct
     2101 gtaacgctcg aaaccagatc cgggcgggtt cgcccggtca gtcctgttgt gaaggtccgc
     2161 tcttcccggg aagagccggc tccctgtgag ccacacctgc ggccgggttt ctctggaaac
     2221 ccggccgcac tgctttcgag ggatggaaac gtcatgcgct ggggaaccta cttcgcggtg
     2281 tgcgctgcgg tgatcagcat cggtctggcc ctgggcgtga ccatgccgct ggtgtcgttg
     2341 cggctggaag gctggggaca tggcaacttc gccatcggcg tgatggcggc gactccggcg
     2401 gtcggtgtgc tgctcggctc gctggtcgcc gggcggctcg ccgcgcgtct gggcaccacg
     2461 ctggtgatgc agctgtgcct gttgctcggc gcgctgtcgg tggcgctgct ggcgctggtc
     2521 cagcactacc cggtgtggct ggggctgcgg ctgttcctcg gcgtggcgct gaccgtggtg
     2581 ttcatcctcg gcgagagctg gatcaaccag ctggcggtgg aaaagtggcg cggccgtctg
     2641 gtggcgctgt atggcaccgg ctatgcgctc agccagctgg ccgggccgtt gctgctgacg
     2701 ctgctcggca ccgataccga cctgggtttc tggaccggca ccgggctgct gatcttcggc
     2761 tcgctggcgc tgctcggccg cactggcgcg ccgcgggtcg acgcccacag cgcctcgggc
     2821 cgcggcctgt tcgacttctg ccggcgcatg ccgaccatcg cctgggcggt cggcctgttc
     2881 gccgcgttcg aggcgatgat gctcaccctg ctgccggtct acggcctgca gcagggcttc
     2941 agccaggacg tggcgctgct gatggccagc gtggtggtgg tcggcgatgc ggccctgcag
     3001 ctgccgatcg gctggctcgc cgaccgcctg ccgcgcagct cgctgttccg cgcctgcggc
     3061 ctggtcctgc tgctgtccag cctgagcgtg ccgatgctgc tgcacacgcc gctgatctgg
     3121 ccgctgtggg tgctgttcgg cgccagtgcg ggcgggctgt tcaccctgtc gctgatcctc
     3181 atcggcgagc gtttccgcga cgacgagctg gtccgcgcca acgctcacgt ggcgcagctg
     3241 tggggcctgg gttgtctggt cggcccgctg ctgaccggcg ccgccagcca gtggctgagc
     3301 ggccacgcgc tgccgctggt gatggccgtc ggcgcggccg gtttcgtctg gctggcctgg
     3361 cgcgacaagg cggggttgcc ggccgtcgag cgctaagtcc ggccttgcgc ccgttacgcc
     3421 gcgggcatcg gccgtgcgct agagcatccg ctccagcccg accagatcgg cgaaccaggc
     3481 gttgaagcgg cgccaggcgc taccgggttc gcgcgtcagt tcgtgcagct tgccgtcgtc
     3541 ctcgacacgc cagcgcatct gcccgtccac cagccgcacc tcgtagctca gcgacggctg
     3601 catgccttcc agggccagtt cgcgcacgcg ttcgctcagc ttcgggctgt ccaccagcac
     3661 gccgacctcg gtgttccaca gcaaggagcg cgggtcgaaa ttcagcgaac cgacgaaggc
     3721 gtagcggcgg tccagcacga tcgccttgct gtgcaggctg gattccgagc tgccgctgaa
     3781 actgtacggg ccgctgccgc ccgagccgtt gccgtccggc tggcggcgca gctcgaacag
     3841 gcgcacgccg tgttccagca attcgcgccg atagggcgcg tagccgccgt gcacggccgg
     3901 cacgtcggtg gcctccagcg aattggtcag caggcggatg ttcacgccgc ggtcggcgtg
     3961 gccggtgaga taacgcatgc cgtcttccgc cggcacgaag taggcggaca ccaggatcag
     4021 ctcgtgttcc agcccctcca gcttgggctc cagttggctg gccaggagca gctgcgggtc
     4081 gggctcgccg tcggcgagca ccttggaagg cgcgtcccac agcgcccagc ccggcgccca
     4141 gatcagctcg ttcagccagc ggtacaagcg cggatcgtcg cggtaggcct gcaggcgttc
     4201 ggacagctcg cgctgctcca cgcgcgcctg ggccaggtag ccgcgcaggc gctgccgggc
     4261 cttggcgagg tcgcgctcgt ccggcggcca gcgcaggaac tgctggatcg gcttgctcag
     4321 cgcgctgttc cagtactggt cgaagctgtg cgccagctga tcggccaccg ggccgacggc
     4381 gagcatgtcg atgtcggtga agttgcggtt gggcttggcg tcgaagtatt cgtcgcccag
     4441 gttgcgaccg ccaacgatgg ccgcgctgcc gtcggccagc cacagcttgt tgtgcatgcg
     4501 ccggtgctgc tggccgaggt tgagggcgcg gccgagcagg cgtgtgacgc cggtggagcg
     4561 gcccaggtgc agcggattga acacccgcac ctggatgttc gggtgggcgg cgagcagggc
     4621 gatctcgtag tcgcggccgt cgctgctggt gtcgtccagc agcaggcgca cgcgcacccc
     4681 gcggtcggcg gcgcgcaaca cctcgtcgat cagggtgcgg gtgctgaggc cgtcgtggac
     4741 gatgtagtac tgcaggtcca ggctgctctg cgccgcgcgg atcaactcgg cgcgggcggc
     4801 gaaggcctcg tcgctggccg gtagcagacg gaagccggac ttgcccttgt ggcgggcggc
     4861 caggtccagc agatgacggc caaagctcga ttcgcttggc ggcaaagtct ggctgggatg
     4921 gatgggcatg gtgctgccgc aggcacccag ggccagcagc agtacgagca gcaaggcgtg
     4981 gcgcactccg gcctccgagg gggttgctcc gttctccttg ggacgtctgc cgttgcgtaa
     5041 agattcaggt ggaatgttcg gccagcagct cgcccaccgt ctcgccgacc cggcgcacgg
     5101 cctgctcgag ggcaccgccc tgggcggtgg cgaagttcat gcgcaggcag ttgcggtact
     5161 tgccggcggc ggaaaagatg ctgcccggcg ccacctgcac cttgtgcggc gccagcaggc
     5221 ggttgaggcg ctggctgtcg aagccctggg gcatctccac ccacagcatg aagccgccct
     5281 ggggctggct gacccgggtg ccggcgggga agtac
//
LOCUS       DATIHC010000954         2828 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_25378, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000954 DATIHC010000000
VERSION     DATIHC010000954.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2828)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2828)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2828
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25378"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..621
                     /locus_tag="VLF16_15905"
     CDS             <1..621
                     /locus_tag="VLF16_15905"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017363163.1"
                     /note="threonine deaminase; threonine dehydratase; in
                     Escherichia coli, IlvA is part of the isoleucine
                     biosynthetic pathway; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HSX72417.1"
                     /translation="VLVGIDSGANINFDRLRHVAERAELGEKREAIIAVTIPERPGSF
                     KAFCEAIGKRQITEFNYRYHTDREAHIFVGVQTHPENDPRQALVKNLREQGFPVLDLT
                     DNELAKLHIRHTVGGHAAAVSDEVVLRFEFPERPGALFNFLNRLGGRWNITMFHYRNH
                     GAADGRVLAALQVPEEERQQIPQALDAIGYPYWDETDNPAYKLFLG"
     gene            631..1071
                     /locus_tag="VLF16_15910"
     CDS             631..1071
                     /locus_tag="VLF16_15910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003286156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2269 family protein"
                     /protein_id="HSX72418.1"
                     /translation="MEHYQLLKYAHLIPAVLVLAGFIAHVFMLWKARRSGDAAVLTRK
                     LRVTRLYSLPALGLLALSLPVSGWWLVHTVGLSLGASWLLFSAVLFAVLVVLGLLLHG
                     RLGAWQAAAGGAVPARLLRFVVAYAALMLVVLLAIFALMGAKPA"
     gene            1071..2327
                     /locus_tag="VLF16_15915"
     CDS             1071..2327
                     /locus_tag="VLF16_15915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017244077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSX72419.1"
                     /translation="MRILLVGAGGFIGRHLLDALVLAGHTVVATRRTPNAALLPGVEW
                     RGLDLLRLQDFAWPDGIELVINASGELSTDAAHMDRLQYQGACTLFELARQHGAAVLQ
                     ISALGAGEHPDVPFLASKARADEHLLGLGIPAVVLRPSLVVGPGGTSSTWLQRLSPSP
                     LIPLLGNRARLQPLHIDDLCAAVLALLRDWPAQSTVLPLVGPRAMTQDELIDVLRAAQ
                     GWKPARYLSVPTPLARLGTALGERLGWQALNRQTLRLSQRDNLADPAALEQTCGYRAA
                     PLASRLRHWPQPAQSLALALQPLALLVLALIWLGTAVVCLGPGFDWGLRIMAEAGVEG
                     LPARLAVIGGGLLDGLLGLGLLRRRWRVRALQAQIGLMLAYSLIISLLLPHYWFDPYM
                     ALGKNFAVLLLSLWLLGLSASSTRSR"
     gene            2324..2791
                     /locus_tag="VLF16_15920"
     CDS             2324..2791
                     /locus_tag="VLF16_15920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003084393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2269 domain-containing protein"
                     /protein_id="HSX72420.1"
                     /translation="MSLYLLLKTLHILSSTLLFGTGLGSAYYALRAWRSGQLQVIATT
                     FRHLVTADWLFIATTAVFQPFSGLALAKLAGWPLSQAWLLWSAGLFVFAGLCWLPVLW
                     LQIRVRDMAAEALCDGRELPERAHRYMRIWFVLGWPAFIAFVAIFWLMVAKPL"
BASE COUNT          368 a         1002 c          963 g          495 t
ORIGIN      
        1 gtgctggtgg gcatcgactc gggcgccaac atcaacttcg accgcctgcg tcacgtggcc
       61 gagcgcgccg agttgggcga gaaacgcgag gcgatcatcg ccgtgaccat ccccgagcgg
      121 ccgggcagct tcaaggcctt ctgcgaggcg atcggcaagc gccagatcac cgagttcaac
      181 taccgctatc acaccgaccg cgaggcacac atcttcgttg gcgtgcagac ccacccggaa
      241 aacgacccgc gccaggcgct ggtgaagaac ctgcgcgagc agggcttccc ggtgctcgat
      301 ctgaccgaca acgagctggc caagctgcac atccgccaca ccgtgggcgg ccatgcggcg
      361 gcggtctcgg acgaggtggt gctgcgcttc gagtttcccg agcgcccggg cgcgctgttc
      421 aacttcctca accgcctggg cggtcgctgg aacatcacca tgttccacta ccgcaaccac
      481 ggcgccgccg acggccgcgt gctggccgcg ctgcaggtgc cggaagagga gcgccagcag
      541 attccgcaag ccctcgacgc catcggctac ccctactggg acgagaccga caacccggcc
      601 tacaagctct tcctcggtta aggaacacgg atggaacact accaactgct gaagtacgcc
      661 cacctgattc ccgccgtact ggtgctggcg ggcttcatcg cccacgtgtt catgctgtgg
      721 aaggccaggc gctccggcga tgccgccgtg ctgacccgca agctgcgcgt cacccgcctg
      781 tacagcctgc cggccctggg cctgctggca ctgtcgctgc cggtcagtgg ctggtggctg
      841 gtgcacacgg tcggcctgtc gctgggcgcc agctggctgc tgttcagcgc cgtgctgttc
      901 gccgtgctgg tggtgctcgg cctgttgctg cacggccgcc tcggcgcctg gcaggcggca
      961 gcggggggcg cggtaccggc caggctgctg cgcttcgtgg tcgcctatgc cgcgctgatg
     1021 ctggtcgtgc tgctggccat cttcgccctg atgggggcca agccggcctg atgcgcatcc
     1081 tgctggtcgg cgccggcggc ttcatcggcc ggcatctgct cgatgccttg gttctcgccg
     1141 gccatacggt ggtggccacc cgccgcacgc caaatgccgc gctgctgccg ggcgtcgaat
     1201 ggcgcggcct cgacctgctg cggctgcagg atttcgcctg gccggacggc atcgagctgg
     1261 tgatcaacgc cagcggcgag ctctccaccg acgccgcgca catggatcgc ctgcaatacc
     1321 agggcgcctg cacgctgttc gagctggccc ggcagcacgg cgccgcggtg ctgcagatct
     1381 ccgccctcgg cgccggcgag catcccgacg tcccgttcct ggccagcaag gcccgggcgg
     1441 acgagcacct gctggggctc ggcattcccg ccgtggtgct gcgcccctcg ctggtggtcg
     1501 gccccggcgg caccagcagc acctggctgc agcgcctctc gccttcgcca ctgataccgc
     1561 tgctgggtaa ccgggcgcga ctacagccgc tgcatatcga tgatctctgc gccgcagtgc
     1621 tggcgctgct gcgcgactgg ccggcgcagt cgaccgtgct gcctctggtg ggcccgcggg
     1681 cgatgaccca ggatgagctg atcgacgtgc tgcgcgccgc ccagggctgg aagccggcgc
     1741 gctacctgag tgtgccgaca ccgctggccc ggctaggcac ggcgctgggc gagcgcctcg
     1801 gctggcaggc gctgaaccgc cagaccctgc gcctgagcca gcgcgacaac ctcgccgacc
     1861 ccgcagcgct ggaacagacc tgcggctatc gcgcggcgcc cctggcgagc cgcctgcggc
     1921 actggccaca gccggcgcag agtctagccc tggcattaca gccgctggca ctgctggtgc
     1981 tggcgctgat ctggctgggt actgccgtgg tctgcctcgg tccaggcttc gactggggcc
     2041 tgcggatcat ggcggaggcc ggtgtcgagg gcctgccggc gcgcctggcg gtgatcggcg
     2101 gcggcctgct cgatggcctg ctgggcctgg gtctgctgcg acgccgctgg cgcgtccgag
     2161 cgctgcaggc acagatcggc ctgatgctgg cctacagcct gatcatcagc ctgctgctgc
     2221 cccattactg gttcgacccg tacatggcgc tgggcaagaa cttcgcggtc ctgctgctga
     2281 gcctctggct gctgggcctt tccgcttcct cgacgagatc ccgatgagcc tgtacctact
     2341 gctcaagacc ctgcacatcc tctcctccac cctgctgttc ggcaccgggc tggggtcggc
     2401 ctattacgct ctgcgcgcct ggcgcagcgg ccagctgcag gtgatcgcca ccaccttccg
     2461 ccatctggtt accgccgact ggctgttcat cgccaccacc gcggtgttcc agccgttctc
     2521 ggggctggcc ctggccaagc tcgcgggctg gccgctgagc caggcctggc tgctgtggag
     2581 cgcggggttg ttcgtgttcg ccgggctgtg ctggctgccg gtgctgtggc tgcagatccg
     2641 cgtgcgcgac atggccgccg aggcgctgtg cgatggccgc gagctgccgg agcgtgccca
     2701 ccgctacatg cgtatctggt tcgtgctggg ctggccggcc ttcatcgcct tcgtcgcgat
     2761 cttctggctg atggtggcca agccgctgtg atggcgtagg gtggatcacg cttaaccgat
     2821 ccagtggg
//
LOCUS       DATIHC010000955         1758 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2246, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000955 DATIHC010000000
VERSION     DATIHC010000955.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1758
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2246"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..226
                     /locus_tag="VLF16_15925"
     CDS             <1..226
                     /locus_tag="VLF16_15925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008373963.1"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HSX72421.1"
                     /translation="QGVKTLGKGLEPLAHAEDGLIEAFHAPSLSPFLFAVQWHPEWQA
                     TQNPDSVKMFQAFGEACRQRQAGLALDLAS"
     gene            440..>1758
                     /locus_tag="VLF16_15930"
     CDS             440..>1758
                     /locus_tag="VLF16_15930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020295993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSX72422.1"
                     /translation="MSQPRSRIAWQLAVALAILLIFLISGSTLFALRSLDQASLTTRE
                     EHLASEARLLADQLTTFHGTLRESTSRLAGLFEQRFASGLSVHAEERVPVAGLTPPAL
                     YLNGQALNGDFTLVDEFRQLTAGVATVFVRDGADFVRITTSVTKEDGNRAIGTVLDHA
                     HPAYQRLLGGQSYVGRALLFGRFYMTQYTPVRDATGNVSAVLFVGFDYTDAQSAQFAD
                     LGRFRIGRSGSLALLDEQGKWLVPPAGVQRPEAVGDRLQQLLSEPGEGHFWSDGQQDF
                     FSVAAPFADGPWQVLASMPKEEIREVTWNVGGQLALGSLTAMVLAVAAVIVLLRRRLR
                     PLDELVDQAQALGAGNLRARSRVTSHDEIGELARGFNQMGEALATMVAHIRSAAQQVG
                     SRSQILSGLSSGAYEGMEQQSGEIGSMAGAVEEFSATAQNIADNMRNT"
BASE COUNT          273 a          621 c          583 g          281 t
ORIGIN      
        1 ccagggcgtg aagaccctgg gcaagggcct ggagccgctg gcccatgccg aggacggctt
       61 gatcgaggcc ttccacgcgc cgagcctgtc gcccttcctg ttcgccgtgc aatggcaccc
      121 ggaatggcag gccacgcaga accccgattc ggtgaagatg ttccaggcct tcggtgaagc
      181 ctgccgccag cgtcaggccg gcctggcgct cgatctggcc agctgagggc gcggctcccg
      241 tggccgaagc accgcggtgt ttcggccatg gattggccga aaagtctctc tcgtgcgtcg
      301 tctgacgaca tttgatggcg caaggccctc aaattcataa tccatactct cctgatcggg
      361 tattctccgc gcccttcgag ggctgacggc gatcccgcga cccttgcgtg cccgaaaaat
      421 acgtccggag agactgatca tgtcccagcc caggtcccgt atcgcctggc agcttgccgt
      481 tgccctcgcg atactcctga tcttcctcat cagcggcagt accctgttcg ctctgcgttc
      541 cctcgatcag gccagcctga ccacccgcga agagcacctg gccagcgagg cccgcctgct
      601 cgccgaccag ctcaccacct ttcacggcac cctgcgcgag agcaccagcc gcctggccgg
      661 cctgttcgag cagcgcttcg ccagcggcct ctcggtgcat gccgaggagc gtgtgccggt
      721 cgccggcctg accccgccgg cgctctacct caacggccag gcgctgaacg gcgacttcac
      781 tctggtcgac gaattccgcc agctcaccgc cggcgtggcc acggtgttcg tccgcgacgg
      841 cgcggacttc gtgcgcatca ccacctcggt gaccaaggaa gacggcaacc gcgccatcgg
      901 caccgtgctc gaccatgccc acccggccta ccagcgcctg ctcggcgggc agagctatgt
      961 cggccgcgcg ctgctgttcg ggcgcttcta catgacccag tacacgccgg tgcgtgatgc
     1021 gaccggcaat gtcagcgccg tgctgttcgt cggcttcgac tacaccgacg cgcagagcgc
     1081 gcagttcgcc gacctcggac gcttccgtat cggtcgcagc ggctcgctgg cgctgctcga
     1141 cgagcagggc aaatggcttg tgccgccggc cggcgtgcag cgccccgagg ccgtgggcga
     1201 ccgcctgcag cagctgctga gcgagccggg cgaggggcac ttctggagcg acggccagca
     1261 ggacttcttc agcgtggccg cgcccttcgc cgatgggccc tggcaagtgc tggcgagcat
     1321 gcccaaggaa gagatccgcg aggtgacctg gaacgttggc ggtcagctgg cgctgggcag
     1381 cctgaccgcc atggtgctgg cggtggccgc ggtgatcgtg ctgctgcgtc ggcgcctgcg
     1441 tccgctcgac gagctggtgg accaggccca ggcgctcggc gcgggcaatc tgcgcgcccg
     1501 ctcgcgagtg accagtcacg acgagatcgg cgaactggcg cgcggcttca accagatggg
     1561 cgaggcgctg gcgaccatgg tcgcgcacat ccgcagcgcg gcgcagcagg tcggcagccg
     1621 ctcgcagatc ctcagcgggc tgtccagcgg tgcctacgag ggcatggagc agcagtccgg
     1681 cgagatcggc agcatggccg gcgcggtgga ggagttcagc gccaccgcgc agaacatcgc
     1741 cgacaacatg cgcaacac
//
LOCUS       DATIHC010000956         2127 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2253, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000956 DATIHC010000000
VERSION     DATIHC010000956.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2127
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2253"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..677)
                     /locus_tag="VLF16_15935"
     CDS             complement(<1..677)
                     /locus_tag="VLF16_15935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003456103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX72423.1"
                     /translation="MSANLPTILVIDDEAQIRKFLRISLSAQGYRVLEAGNGSEGLAQ
                     AALERPDLVVLDLGLPDMDGKQVLGELREWSQVPVLVLSVRASEGEKVLALDGGANDY
                     VTKPFGIQEFLARVRALLRQGGSGEPQEAAVDSGPLRVDFAYRRVSLDGAEVALTRKE
                     YAVLAMLARHLGRVVTQQQLLKEIWGPSHVEDSHYLRVVVGHLRQKLGDDPAVPRFIV
                     TEAGVGYR"
     gene            complement(781..>2127)
                     /locus_tag="VLF16_15940"
     CDS             complement(781..>2127)
                     /locus_tag="VLF16_15940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003456104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSX72424.1"
                     /translation="ALLCAGLSFLAYNLLFIEPLLSLKIARQQDVLTLLFFLLMAGLT
                     GNLASRQRRQLQALRRTQAETTALLELSRKLTVATDRQAVFSAATQQFGLWQDLDISL
                     QSRDRDGVWKVEAGVQRLLTEQERAAADWSWQQLQPSGLGTGTLPGGRWWWWPLAGDE
                     GPLALLGVAPKDERPLSPERRRLIAALGQPLAQALERAQLASDLEAARLHGQTEELRS
                     ALLASVSHDLRTPLTAMRGSIDSLLALGEQIPLADRRELLEGTRDEAERLDRYIQNLL
                     DMTRLGHGGLKLERDWVAPADVVASAVQRLRPVLAPLQVELQVPAELPLLYAHAALIE
                     QALVNVLENAARFSPAQGRLRVSIACDAGELRFAVSDQGPGIPQNERERIFDMFYTAA
                     RGDRGGQGTGLGLAICQGMVGAHGGRVTVGEGLEGRGATLILHLPLHPQPQPEEEV"
BASE COUNT          309 a          786 c          728 g          304 t
ORIGIN      
        1 cggtagccga cccccgcctc ggtgacgatg aaacgcggca cggccgggtc gtcgccgagc
       61 ttctgccgca ggtgccctac caccactcgc aggtagtggc tgtcctccac atggctcggc
      121 ccccagatct ccttgagcag ctgctgctgg gtcaccaccc gtcccaggtg gcgcgcgagc
      181 atggccagca ccgcatactc cttgcgggtc aacgccacct cggcgccgtc caggctgacc
      241 cgccgatagg cgaagtcgac ccgtagcggc ccgctgtcca ccgccgcctc ctgcggctcg
      301 ccgctgccgc cctggcgcag cagcgcacgc acccgggcga gaaactcctg gatgccgaac
      361 ggcttggtca catagtcgtt ggcgccgccg tccagcgcca gcaccttctc gccctcgctg
      421 gcgcgcaccg agagcaccag caccggcact tgcgaccatt cgcgcagctc gcccagcacc
      481 tgcttgccgt ccatatccgg caggccgagg tcgagcacca ccaggtcggg gcgctccagc
      541 gccgcctggg ccaggccctc gctgccgttg ccggcctcca gcacccggta gccctgggcg
      601 ctgaggctga tgcgcaggaa cttgcggatc tgcgcctcgt cgtcgatgac caggatggtc
      661 gggagattgg cgctcatggt cttggctcgt tatcgcaagg agacttgccc cggactgaag
      721 accgggccac gacgtggcac gggctcggca gccccgactt cagtccgggg cgagctcggc
      781 tcatacctct tcttccggct gcggttgcgg atgcagcggc aggtgcagga tcagggtcgc
      841 gccgcggccc tccaggccct cgcccaccgt cacccggccg ccgtgggcgc cgaccatgcc
      901 ctggcagatc gccaggccca ggccagtgcc ctgaccgcca cggtcgcccc tggccgcggt
      961 atagaacatg tcgaagatcc tttcccgctc gttctgcgga atgcccgggc cctggtcgct
     1021 gacggcaaag cgcagctcgc ccgcgtcgca ggcgatgctc acgcgcaagc gaccctgggc
     1081 cggcgagaag cgcgcggcgt tctccagcac gttgaccagc gcctgctcga tcagcgccgc
     1141 gtgggcgtac agcagcggca gttcggccgg cacctgcagc tccacctgca gcggcgccaa
     1201 caccgggcgc aggcgctgca cggcgctggc gaccacgtcg gccggcgcca cccagtcgcg
     1261 ctccagcttg aggccgccat ggcccaggcg ggtcatgtcc agcaggttct ggatatagcg
     1321 gtcgaggcgc tcggcctcgt cgcgggtgcc ttccagcagc tcgcggcggt cggccagggg
     1381 aatctgctca cccagggcca gcaggctgtc gatggagccg cgcatggcgg tgagcggcgt
     1441 gcgcaggtcg tgtgacaccg aggccagcag cgcgctgcgc aattcctcgg tctgcccgtg
     1501 caggcgcgcg gcttccaggt cggatgccag ctgcgcacgt tccagcgcct gggccagcgg
     1561 ttggccgagg gcggcgatca atcgccggcg ctccgggctc agcggccgct cgtccttcgg
     1621 cgccacaccc agcagcgcca gcgggccctc gtcgccggcc agcggccacc accaccagcg
     1681 cccgccgggc aaggtgccgg tgccgagccc ggacggctgc agctgctgcc aggaccagtc
     1741 ggcggcggcg cgctcctgtt cggtgagcag gcgctgcacg ccggcctcga ccttccacac
     1801 gccgtcgcga tcacgcgact gcaggctgat gtcgaggtcc tgccaaagac cgaactgctg
     1861 ggtggcggca gagaacaccg cctggcggtc ggtggccacg gtgagcttgc gcgacaactc
     1921 gagcagcgcc gtggtctccg cctgggtgcg gcgcagggcc tgcagctggc ggcgttgacg
     1981 gctggccagg ttgccggtga gtccagccat cagcaggaag aacagcaggg tcagcacgtc
     2041 ctgctggcgg gcgatcttca acgacagcag cggctcgatg aacagcaggt tgtaggccag
     2101 gaacgacagg ccggcgcaca gcagcgc
//
LOCUS       DATIHC010000957         2725 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18369, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000957 DATIHC010000000
VERSION     DATIHC010000957.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2725
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18369"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..335
                     /gene="gidA"
                     /locus_tag="VLF16_15945"
     CDS             <1..335
                     /gene="gidA"
                     /locus_tag="VLF16_15945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019366472.1"
                     /note="GidA; glucose-inhibited cell division protein A;
                     involved in the 5-carboxymethylaminomethyl modification
                     (mnm(5)s(2)U) of the wobble uridine base in some tRNAs;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HSX72425.1"
                     /translation="AALAEVTEAPQVDAQVAEQVEIKTKYAGYIDRQQEEIERLRASE
                     DTKLPADIDYASISGLSKEIQHKLGNARPETLGQAGRIPGVTPAAISLLLIHLKKRGA
                     GRQLEQSA"
     gene            335..982
                     /gene="rsmG"
                     /locus_tag="VLF16_15950"
     CDS             335..982
                     /gene="rsmG"
                     /locus_tag="VLF16_15950"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012020337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA];
                     GO_process: GO:0046118 - 7-methylguanosine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HSX72426.1"
                     /translation="MSVVIQRHADELAQGAQTLGVTLTAQQHEQLLGYLALLIKWNKA
                     YNLTAVRNPDEMVSRHLLDSLSVVPFVAQHGDNWLDVGSGGGMPGVPLAILFPERRFT
                     LLDSNGKKTRFLTQVKLELKLANLEVIHSRVEEFRPQVPFSGICSRAFSSLEDFSNWT
                     RHLGDADTHWLAMKGVQPDDELQALPADFHLQSCDVLRVPGCQGQRHLLILRRSV"
     gene            994..1782
                     /locus_tag="VLF16_15955"
     CDS             994..1782
                     /locus_tag="VLF16_15955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HSX72427.1"
                     /translation="MAKVFAIANQKGGVGKTTTCINLAASLVATKRRVLLIDLDPQGN
                     ATMGSGVDKQALEHSIYDVLIGESTVGEAMQFSEHGGYQLLPANRDLTAAEVALLEMK
                     MKESRLRYALAPIRENYDYILIDCPPALSMLTVNALVAADGVIIPMQCEYYALEGLSD
                     LMNSIQRIGQLLNPNLKIEGLLRTMYDPRISLTNDVSAQLKEHFGDQLYDVVIPRNVR
                     LAEAPSFGMPALAYDKQSRGAIAYLALAGELVRRQRAAAKTATA"
     gene            1791..2663
                     /locus_tag="VLF16_15960"
     CDS             1791..2663
                     /locus_tag="VLF16_15960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HSX72428.1"
                     /translation="MATKKRGLGRGLDALLGGSTAATLEEEAVQVDSRELQHLPLDLI
                     QRGKYQPRRDMDPSALEELANSIKAQGVMQPIVVRPIGGGRFEIIAGERRWRASQQAG
                     LDKIPAMVREVPDEAAIAMALIENIQREDLNPIEEAVALQRLQQEFELTQQQVADAVG
                     KSRVTITNLLRLIALPDEIKTLLSHGDLEMGHARALLGLPMEQQVEGARHVVARGLTV
                     RQTEALVRQWLNAKEKPVEKVKADPDINRLEQRLAEKLGAPVQIKHGAKGKGQLVIRY
                     GSLDELQGVLAHIR"
BASE COUNT          543 a          927 c          846 g          409 t
ORIGIN      
        1 acgccgccct ggccgaagta accgaagcgc cgcaggtgga tgcccaggtc gccgagcagg
       61 tcgagatcaa gaccaagtac gccggctaca tcgaccgcca gcaggaagag atcgagcgcc
      121 tgcgcgccag tgaagacacc aagctgccgg ccgatatcga ctacgccagc atctccggcc
      181 tgtccaagga gattcagcac aagctcggca acgcccgccc cgagacgctc ggccaggccg
      241 gccgcatccc gggcgtgact ccggcggcca tctccctgct gctgatccac ctgaagaaac
      301 gcggcgccgg ccgccagctg gagcagagtg cctgatgtcg gtggttatcc aacgccatgc
      361 cgacgaactc gcgcagggcg cgcagacgct tggcgtaacg ctcaccgccc agcagcacga
      421 acagctgctt ggctacctgg cgctgctgat caagtggaac aaggcgtaca acctgaccgc
      481 cgtgcgcaac ccggacgaga tggtctcgcg ccatttgctc gacagcctgt ccgtggtgcc
      541 cttcgtcgct cagcacggtg acaactggct ggacgtcggc agtggcggcg gcatgcccgg
      601 cgtgccgctg gccatcctgt tccccgagcg ccgcttcacc ctgctcgact ccaacggcaa
      661 gaagacccgc tttctcaccc aggtgaagct ggagctcaag ctggccaacc tggaagttat
      721 ccacagccgg gtcgaggaat tccgcccgca ggtgccgttc agcggcatct gctcgcgtgc
      781 cttcagttcg ctggaagact tcagcaactg gacccgtcat ctcggcgatg ccgacaccca
      841 ctggctggcg atgaagggcg tgcagcccga cgacgagctg caggcactgc cggcggactt
      901 ccacctgcaa agctgcgacg tgctacgggt tcccggttgc caaggccagc gccatctgtt
      961 gatactgcgt cgctcggtct aaaggggagc aagatggcca aggtattcgc gatcgccaac
     1021 cagaaaggcg gagtcggcaa gaccaccacc tgcatcaacc tggccgcctc gctggtcgcc
     1081 accaagcgcc gcgtgctgct gatcgacctc gatccccagg gcaacgccac catgggtagc
     1141 ggtgtggata agcaggccct ggagcattcc atctacgacg tgctgatcgg cgagagcacc
     1201 gtcggcgagg ccatgcagtt ctccgagcac ggcggctacc agctgctgcc ggccaaccgc
     1261 gacctgaccg ccgcggaagt cgcgctgctc gagatgaaga tgaaggagag ccgcctgcgc
     1321 tacgccctgg cgccgatccg cgagaactac gactacatcc tcatcgactg cccgccggcg
     1381 ctgtcgatgc tcacggtcaa cgccctggtc gccgccgatg gcgtgatcat ccccatgcag
     1441 tgcgagtact acgcactgga aggcctgagc gacctgatga acagcattca gcgcatcggg
     1501 cagctgctca atccgaacct gaagatcgaa ggcctgctgc gcaccatgta tgacccgcgc
     1561 atcagcctga ccaacgatgt cagcgctcag ctcaaggagc acttcggcga ccagctgtac
     1621 gacgtggtga tcccgcgcaa cgtgcgcctg gccgaggcgc ccagctttgg catgccggcg
     1681 ctggcatacg acaagcaatc ccgcggcgcc atcgcctacc tggccctggc cggcgaactg
     1741 gtgcgccgac agcgcgccgc cgcaaaaacc gcaaccgcat aaggaatccc atggccacca
     1801 agaaacgagg actcggccgc ggcctggacg ccctgctcgg cggcagcacc gccgccaccc
     1861 tggaagagga agcggtccag gtcgacagcc gcgagctgca gcacctgccg ctggacctga
     1921 tccagcgtgg caagtaccag ccgcgtcgcg acatggatcc ctcggccctg gaagagctgg
     1981 ccaactcgat caaggcccag ggcgtgatgc agccgatcgt cgtgcgcccc atcggcggcg
     2041 gccgtttcga gatcatcgcc ggcgaacgcc gctggcgcgc cagccagcag gccggcctgg
     2101 acaagatccc ggccatggtt cgcgaagtgc cggacgaagc cgccatcgcc atggcgctga
     2161 tcgagaacat ccagcgcgaa gatctcaatc cgatcgaaga ggctgtagcc ctgcagcgcc
     2221 tgcagcagga gttcgagctg acccagcagc aggtcgccga cgccgtgggc aagtcccggg
     2281 tgaccatcac caacctgctg cgcctgatcg ccctgccgga cgagatcaag accctgcttt
     2341 cccatggcga tctggaaatg ggtcacgccc gcgcgctgct cggcctgccc atggagcaac
     2401 aggtggaagg cgcgcgacat gttgtcgcac gaggcctcac cgtgcgccaa accgaggcac
     2461 tggtgcgcca gtggctgaac gccaaggaaa aacctgttga gaaggtcaag gccgatcccg
     2521 acatcaatcg tctggaacag cgcctggccg agaagctagg cgctccggtg cagatcaagc
     2581 atggtgccaa gggcaaaggt cagctggtga tccgttatgg ttcgctcgat gaactgcagg
     2641 gcgttctggc ccacatccgc tgacacaatt gcacatgtag cgagcggtcg gaattcacta
     2701 ccggcctgtt gaacgggggg ggttc
//
LOCUS       DATIHC010000958         2348 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_16144, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000958 DATIHC010000000
VERSION     DATIHC010000958.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2348)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2348)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2348
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16144"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1038)
                     /locus_tag="VLF16_15965"
     CDS             complement(<1..1038)
                     /locus_tag="VLF16_15965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014598043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSX72429.1"
                     /translation="MQLTDLPLGPLERALLATLQRLEPQAEAAVLTCAALCSEALAAG
                     DVCLPLARVAGRRPWAEHDFVLPSRDELRALLESSALVGAPGRFAPLILEGERLYLAR
                     YQAYEQRLAERLLALSAERPVVDEVLLGESLTRLFAFNQQQPDWQRLAAAQAVRRRLA
                     VISGGPGTGKTTTVVRLLAALLEQPGGERLAIGLAAPTGKAAARMAEAIRNAKADLPL
                     ADELKALLPEEARTLHRLLGSRGDSPAVRHDAARPLALDVLVVDEASMVDLALMAKLV
                     DALPPQARLILLGDKDQLAAVEAGAVFAELCEGRGFDAEAAAELRRITGQTVPVEAPR
                     SALGDAVVLLTH"
     gene            complement(1318..>2348)
                     /locus_tag="VLF16_15970"
     CDS             complement(1318..>2348)
                     /locus_tag="VLF16_15970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013984382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HSX72430.1"
                     /translation="RELPGQDALGELAQYLATREGPVLAAELDRLADGSAGLIARLAP
                     LAEEVQAAGEGRAEPPQALQPFERSLHSAWRIGSFSGLSAGMHMEAPDRDSLALVDAS
                     EPGVGFFAFPRGARAGTCLHAILEDWMRGKGSLEQLVPLALQEHGIDAELWSEIAIAQ
                     LQAVLDTDLDGQGLRLAALQPNRRLPELGFTFPVERLDVQRLRELLADPAHGLPPAMR
                     QAAERLQFDELKGFLKGFIDLTFEHAGRWYILDYKSNWLGPTAAHYGAGRLEQAIAAE
                     HYHLQYLIYLVALRRFLRTRLAGFDDDQLGGAWYLFLRGMPEAGVYFARPADTLLDAL
                     DALFGGGA"
BASE COUNT          357 a          851 c          830 g          310 t
ORIGIN      
        1 gtgggtgagc agcaccacgg cgtcgccgag ggccgagcgc ggcgcctcga ccgggaccgt
       61 ctggccggtg atgcgccgca gctcggcggc ggcctcggcg tcgaagccac ggccctcgca
      121 cagctcggcg aacaccgcac cggcctccac ggcagccagc tggtccttgt cgccgagcag
      181 gatcagtcgc gcctgcggcg gcagggcgtc gaccagcttg gccatcagcg ccaggtcgac
      241 catcgaggcc tcgtccacca ccagcacgtc cagcgccagc ggccgcgccg cgtcgtggcg
      301 cactgccggg ctgtcgccac ggctgccgag caggcggtgc agggtgcgcg cctcttccgg
      361 caacagcgcc ttgagttcat cggccagcgg taggtcggcc ttggcattgc ggatcgcctc
      421 ggccatgcgt gccgccgcct tgcccgtggg cgcggccagg ccgatggcca ggcgctcgcc
      481 gccgggctgt tccaaaagag ccgccagcag gcgcaccacc gtggtggtct tgccggtgcc
      541 ggggccgccg gaaatcaccg ccagccgccg acgcaccgcc tgggcggcgg cgaggcgctg
      601 ccagtccggt tgctgctggt tgaaggcgaa caggcgcgtc aggctctcgc ccagcagcac
      661 ctcgtccacc acggggcgct cggcggacag cgccagcagg cgctcggcca ggcgctgttc
      721 ataggcctgg tagcgcgcca ggtacaggcg ctcgccctcg aggatcagcg gcgcgaaacg
      781 gccgggcgcg ccgaccagcg cggaggactc cagcaacgcc cgcagctcgt cccgcgatgg
      841 caggacgaag tcgtgctccg cccagggccg gcgaccggcc acccgcgcca gcggcaggca
      901 cacatccccc gccgccaggg cctcgctgca cagcgcggcg caggtcaaca cggcggcttc
      961 ggcctgcggc tcgaggcgct gcaaggtggc gagcagggcg cgctcgagcg ggccgagggg
     1021 caggtcagtc aactgcatcg ccaacctcct gctcgttggc aactcgtagg gtggacaacg
     1081 gcgtagcctt gtccaccgtg gcacccggcg gatattcgct gcgcgagata tccgccctac
     1141 gttcggtgct catcgggctc cctccgcaaa catacgaagt agcccggatg caatccgggt
     1201 aggcccgacc ccggattgca tccgggctaa tgctcatcgg ctccacgtag ggtgcgccat
     1261 gcgcaccggc gcgacggcgc aatgccgtgg tgcgcatggc gcaccctaca tccggattca
     1321 tgcgcctcct ccgaacaacg cgtcgagcgc atccagcagc gtgtcggccg gccgcgcgaa
     1381 atacacgccc gcctccggca tgccgcgcag gaacaggtac caggcgccgc ccagctggtc
     1441 gtcgtcgaag ccggcgaggc gcgtgcgcag gaagcgccgc agcgccacca ggtagatcag
     1501 gtattgcagg tggtagtgct cggcggcgat ggcctgctcc aggcgcccgg cgccgtagtg
     1561 cgcggcggtc gggccgagcc agttggactt gtagtcgagg atgtaccagc gcccggcatg
     1621 ctcgaaggtc aggtcgatga aacccttcaa aaaacccttc agctcgtcga actgcaggcg
     1681 ctcggcggcc tgacgcatgg ccggcggcag gccgtgcgcc ggatcggcca gcagctcgcg
     1741 caggcgctgc acatcgaggc gctcgaccgg gaaggtgaag cccagctcgg gcaggcgccg
     1801 gttgggctgc aacgccgcca ggcgcaggcc ctggccgtcc agatcggtgt ccagcaccgc
     1861 ctgcagctgg gcgatggcga tttcgctcca cagctcagcg tcgatgccgt gctcctgcag
     1921 ggcgagcggc accagttgct caaggctgcc cttgccacgc atccagtctt cgaggatggc
     1981 gtgcaggcag gtaccggcac gggcgccacg cgggaaagcg aagaagccga cgcccggctc
     2041 gctggcatcg accagggcca ggctgtcgcg gtccggcgcc tccatatgca tgcctgccga
     2101 caagcccgag aagctgccga tgcgccaggc gctgtgcaag ctgcgctcga acggttgcag
     2161 ggcctgcggc ggctcggcgc ggccctcgcc ggcggcctgg acctcttcgg cgagcggcgc
     2221 caggcgcgcg atcagtccgg cactgccgtc cgccagtcga tccagctcgg cggccaggac
     2281 cggtccctcg cgtgtcgcga gatactgagc caactcgccc aaggcatcct gaccgggcag
     2341 ctcgcggc
//
LOCUS       DATIHC010000959         5209 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_22958, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000959 DATIHC010000000
VERSION     DATIHC010000959.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5209)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5209)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5209
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22958"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..141
                     /locus_tag="VLF16_15975"
     CDS             <1..141
                     /locus_tag="VLF16_15975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008024723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72431.1"
                     /translation="EVNRNVANIRDVTETLSSQAEESAQVSQSLNSLANHQQGLMDQF
                     RV"
     gene            388..984
                     /locus_tag="VLF16_15980"
     CDS             388..984
                     /locus_tag="VLF16_15980"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016492407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HSX72432.1"
                     /translation="MLNIALIAGSSRNGSQSAKVARHLRQRLIALGLSSTEQSSLIDL
                     GERALPLWPSDDKGPWADYQQQLAAADALVVIAPEWNGMACPAVKNFFLYASKAELAH
                     KPALLVGVSSGIGGAYPISELRASGYKNCRIAYLPEHLIVRQVEAVMNEGEARGEDDL
                     RIRKRADYALDILGKYAEALKPVRAAIDLSEPAFTNGM"
     gene            complement(1009..2334)
                     /locus_tag="VLF16_15985"
     CDS             complement(1009..2334)
                     /locus_tag="VLF16_15985"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020191987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HSX72433.1"
                     /translation="MRSIQRRLSLGLAGVLVVVGLILAQSSLWLFDHSLRRYLREDLE
                     DETQTLLIALVRGQNGVQLDERRLDPTFQRPFSGHYFRIDFGDETWRSRSLWDRTLQP
                     PAKEGLQDGLGDGPQGQRLLVFRADYRRFGQTFSINVAQDYTPILQGFRRLQWLGLAL
                     GGGALLLILLAQRYTVRVALRPLERVRGQIAQLQQGRRSELDSQVPQELEPLVGQINR
                     LLSHTEETLRRSRNALGNLGHALKTPLAVLVSLSERQDLRDQPELQATLREQLTQIQQ
                     RLERELGRARLAGEALPGAHFDCAAELPGLFSTLGMIHSHGLKLDWHAAPGLCLPWDR
                     EDLLELLGNLLDNACKWADAEVRLSLAEEGDAYRLWVDDDGPGIAPQRRADVLGRGTR
                     LDEQVAGHGLGLGIVRDIVDAWGGSLSLEDSPLGGLRVVVRLPKNSSVA"
     gene            complement(2331..2999)
                     /locus_tag="VLF16_15990"
     CDS             complement(2331..2999)
                     /locus_tag="VLF16_15990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016568457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSX72434.1"
                     /translation="MRLLLVEDHVPLADELIAALGRQGYAVDWLADGRDAVYQGATEP
                     YDLIVLDLGLPGKPGLEVLREWRAGGLATPVLILTARGSWAERIEGLKAGADDYLTKP
                     FHPEELALRLQALARRAHGLANQPQLEAAGLQLDEGCQCVTRDGEQIELTSAEFRLLR
                     YFMLHPGQILSKGQLADHLYDGESERDSNVLEVHVNRLRGKLGREVIETRRGQGYRYA
                     GVGA"
     gene            complement(2999..3313)
                     /locus_tag="VLF16_15995"
     CDS             complement(2999..3313)
                     /locus_tag="VLF16_15995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HSX72435.1"
                     /translation="MKFVFRYSGILTLVLAVLALDAQARDLDQDEALRLRQEGVIRPL
                     EMLMAPALGRYPGAELLEAELEEEDDVLVYEVELLTLDGTVRELELDARDGRILKDEV
                     ED"
     gene            complement(3313..3621)
                     /locus_tag="VLF16_16000"
     CDS             complement(3313..3621)
                     /locus_tag="VLF16_16000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015648988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HSX72436.1"
                     /translation="MNKLTSLFAIAALAATAGIAQARDLGPDEALKLRDAGTIQNFEK
                     LNEAALAKHPGAKVEDTELEQEHGRYVYQVELRDAQGVQWDVEVDATNGQVLQEHRDD
                     "
     gene            3803..4882
                     /locus_tag="VLF16_16005"
     CDS             3803..4882
                     /locus_tag="VLF16_16005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017362920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HSX72437.1"
                     /translation="MTAIHVKSPALSLRAGKRALVRIREHGLQPADVGILPGAAGGPK
                     GLGIQGLDLALFGEWLPRAPRERTLIGASIGSWRFASACLPDACAGIQRLGELYTSQR
                     FAKGVSMAEVSRSCVKLLDELLEGQDAAVLNNPFYRLNVVVVRSHGLLQHDHRGKLGL
                     GLSSVIGSNLLGRSLLGRHFDRVIMHDARQTPPLATLNDFRSHFHALAETNLRHALLA
                     SGSIPMVMEAIRDIPGLEPGTYRDGGLLDYHLDLPYQGDGVVLYPHFTDRVIPGWFDK
                     GLPWRRGDGERLQDVLLLAPSREYLASLPHGKLPDRSDFKRYLGNDDGREHYWRKAMA
                     ESQRLGDEFLELADSGRIGERLAPL"
     gene            4998..>5209
                     /locus_tag="VLF16_16010"
     CDS             4998..>5209
                     /locus_tag="VLF16_16010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HSX72438.1"
                     /translation="MELFKEFTFESAHLLPHVPTGHKCGRLHGHSFRAAIYIEGDVDP
                     HTGWIRDFAEIKAIFKPIYERLDHHYL"
BASE COUNT          900 a         1818 c         1597 g          894 t
ORIGIN      
        1 gaggtcaacc gcaacgtggc caacatccgc gacgtcaccg agacgctgtc cagccaggcc
       61 gaggaatccg cgcaggtcag ccagagcctg aacagcctgg ccaaccacca gcaggggctg
      121 atggaccagt tccgcgtctg acgtccacac ggcgcagaag cggccgcgga atgctcatgt
      181 acctctcgta cctgtcgcat cttcggccgc ttttttgcgg gagccgccag gccctttcca
      241 gcgctgagcc caaagaccgt gaacagtccc cacgcggcgc cttcgatcta gctggcgtca
      301 tccgtcggcg tccctgacgc ctcgccactt gccccggccc agagcggccg gtagcctgcg
      361 cgcaatcatt cgccagagag aataccgatg ctcaatatcg ccctgatcgc cggctccagc
      421 cgcaacggca gccagtccgc caaggtcgcc cgtcatctgc gtcaacgcct gatcgcactc
      481 ggcctgagca gcaccgagca gagcagcctg atcgatctcg gcgagcgcgc tctgccgctg
      541 tggccgtccg acgacaaggg cccctgggcc gactaccagc aacagctggc agccgccgat
      601 gcgctggtgg tgatcgcgcc ggagtggaac ggcatggcct gcccggcagt gaagaacttc
      661 ttcctctacg ccagcaaggc cgaactggcg cacaagcctg cgctgctggt gggtgtgtct
      721 tccggcatcg gcggcgctta cccgatcagc gaactgcgcg cctcgggcta caagaactgc
      781 cgcatcgcct acctgccgga gcacctgatc gtgcgccagg tggaagcggt gatgaacgag
      841 ggcgaggctc gcggcgagga cgacctgcgc atccgcaagc gcgccgacta cgccctggac
      901 attctcggca agtacgccga ggcgctgaaa ccggtacgcg cggccatcga cctgagcgag
      961 ccggccttca ccaacggcat gtgacggagc gcctcgccga agcgctcctc aggcaacgga
     1021 cgagttcttc ggcaagcgca ccaccacccg cagcccgccc agcgggctgt cttccaagct
     1081 caggctgccg ccccaggcat cgacgatatc gcgcacgatc ccgaggccga ggccatgccc
     1141 ggcgacctgc tcgtccagcc gcgtgccccg gcccagcacg tcggcgcggc gttgcggcgc
     1201 aatcccgggg ccgtcatcgt cgacccacag ccggtaggca tcgccctcct ccgccaggct
     1261 cagacgcact tcggcatcgg cccatttgca ggcgttgtcg agcaggttgc cgagcagttc
     1321 cagcagatcc tcccgatccc acggcagaca caggcccggc gcggcgtgcc agtcgagttt
     1381 gaggccatgg ctgtggatca tccccagggt ggagaacagc cccggcagct ccgctgcgca
     1441 atcgaaatgc gcgccaggca gcgcctcgcc ggccaaccgt gcacgtccca gttcgcgctc
     1501 cagccgttgc tggatctgcg tcagctgctc acgcagcgtt gcctgtagtt ccggctggtc
     1561 acgcaggtcc tgccgttcac tcaggctgac cagcaccgcc agcggcgtct tcagggcatg
     1621 gcccagattg cccagcgcat tgcgcgatcg cctgagcgtc tcctcggtat ggctcagcag
     1681 ccggttgatc tgccccacca gcggctccag ctcctgaggc acctggctgt ccagctcgct
     1741 gcggcgtccc tgctgcagtt gggcgatctg cccgcgtacc cgctccagcg gccgcagagc
     1801 cacacgcacc gtgtagcgct gggccagcag gatcagcagc agcgcgccgc cgcccagcgc
     1861 cagacccagc cactgcagac ggcgaaagcc ctgcaggatc ggcgtgtagt cctgagccac
     1921 gttgatggaa aaggtctggc cgaagcgccg atagtcggcg cgaaatacca gcagccgctg
     1981 gccttgcggc ccgtcaccca ggccgtcctg caacccttcc ttggccggcg gttgcagggt
     2041 ccggtcccac agggaacggg agcgccaggt ttcatcgccg aagtcgatgc ggaagtagtg
     2101 gccggagaac ggccgctgga aggtcggatc cagccgtcgc tcatccagct gcacaccgtt
     2161 ctggccgcgt acgagggcga tcagcagggt ctgggtttcg tcttcgaggt cctcgcgcag
     2221 gtaacgccgc aggctgtgat cgaacagcca caggctgctc tgcgccagga tcagccccac
     2281 caccaccagc actcccgcca ggcccaggct gaggcggcgc tggatggacc tcaagcgccg
     2341 accccggcgt agcggtaacc ctggccacgg cgcgtctcga tcacctcgcg gccgagcttg
     2401 ccgcgcagac ggttgacgtg cacctcgagc acattggaat cgcgctcgct ctcgccgtcg
     2461 tacaggtggt cggcgagctg gcccttggac aggatctgcc cggggtgcag catgaagtag
     2521 cgcagcaggc ggaactcggc ggaagtcagc tcgatctgct cgccatcgcg ggtcacgcac
     2581 tggcacccct cgtccagctg caagcctgcc gcctcgagct gcggctggtt ggccaggcca
     2641 tgggcgcggc gcgccaacgc ctgcaggcgc aacgcgagtt cctcgggatg aaacggcttg
     2701 gtgaggtagt cgtcggcacc ggccttgagg ccctcgatgc gctcggccca ggagccacgc
     2761 gccgtcagga tcagcactgg cgtggccagg ccacccgcac gccactcgcg cagcacctcg
     2821 aggcccggtt tgccgggcag gcctagatcg agcacgatca ggtcatacgg ctcggtggcg
     2881 ccttgataga cggcatcgcg gccgtccgcc agccagtcca ccgcatagcc ctggcgccct
     2941 agcgcggcga tcagttcgtc ggccagcggt acatgatctt cgaccagtag cagacgcatc
     3001 agtcctccac ttcgtccttg aggatgcgac cgtcgcgggc atccagctcc agttcacgga
     3061 cggtgccgtc gagcgtcagc aactcgacct cgtagaccag cacatcgtct tcctcttcca
     3121 gctccgcctc cagcaactcg gccccggggt aacgccccag ggccggtgcc atcagcatct
     3181 ccagggggcg gatcaccccc tcctgacgta gccgcagtgc ctcgtcctgg tccagatcgc
     3241 gcgcctgggc atcgagtgcc agcaccgcga gaaccagcgt gaggatgccg ctatagcgaa
     3301 acacgaattt catcagtcat cccggtgctc ttgcaggacc tggccattgg tggcgtccac
     3361 ctccacatcc cactgcacgc cctgggcgtc acgcagctcg acctggtaga cgtagcggcc
     3421 atgctcctgc tccagctcgg tgtcctcgac tttcgcgccc ggatgcttgg ccagcgcggc
     3481 ctcgttgagc ttctcgaaat tctggatggt gccggcatca cgcagtttca gcgcctcgtc
     3541 cgggccaaga tcgcgagcct gggcgatacc agcagtggcg gccagggcgg cgatggcgaa
     3601 aaggctggtc agcttgttca tggtgttctc ctcgggggta tctgctgtct acggtgccaa
     3661 agatactcat gccgacttaa ttgaagctga attgtcggcg acagccccga ccacccacaa
     3721 cagtcgcgat attcatggtc tgaagtcgct tggcctggtt caccacgtca ctataatcgc
     3781 aggcctgcaa tcggagccga gcatgaccgc cattcacgtc aagtcccctg ccctcagtct
     3841 gcgcgccggc aaacgcgccc tggtccgcat ccgcgaacat ggcctgcaac cggctgacgt
     3901 cggcattctg ccgggcgccg ccggtggccc aaagggcctg ggcattcagg gcctggatct
     3961 ggcgctgttc ggtgaatggc tccctcgtgc acctcgcgag cgcaccctga tcggcgcctc
     4021 gatcggctcc tggcgcttcg ccagcgcctg tctaccggat gcctgcgcgg gtatccagcg
     4081 cctgggcgag ctctacacca gccagcgctt cgccaagggc gtgagcatgg ccgaggtctc
     4141 gcgtagctgc gtgaaactct tggacgaact gctcgaaggg caggatgcag cggtgctgaa
     4201 caaccccttc tatcgtctga atgtggtggt ggtgcgcagc cacggtctgc tgcagcacga
     4261 ccatcgcggc aagctggggc tgggactctc ttcggtgatc ggcagcaacc tgctcggacg
     4321 cagccttctt gggcgccact tcgaccgcgt gatcatgcac gatgcccggc agacgccacc
     4381 gctggccacg ctcaacgact tccgctctca cttccatgcc ttggccgaaa ccaatctgcg
     4441 ccatgcacta ttggcatccg gctcgatccc gatggtcatg gaggcgatcc gcgacatccc
     4501 cggcctggag cctggcacct atcgcgatgg tggcctgctc gattatcacc tcgaccttcc
     4561 ctatcaaggc gacggcgtgg tgctgtatcc gcacttcacc gaccgggtga ttcccggctg
     4621 gttcgataaa ggcctgccgt ggcgcagggg cgacggcgag cgcttgcagg atgttctgtt
     4681 gttggcgccc tcgcgcgaat atctggcgag cctaccccac ggcaaactgc cagatcgcag
     4741 cgacttcaaa cgctacctgg ggaacgacga cggccgtgag cattactggc gcaaagcgat
     4801 ggccgaaagc caacggctgg gtgacgagtt tctcgaactc gccgatagcg gccgtatcgg
     4861 cgaacgcctg gctccgctct aggacggtta gccgcccggt gatccggagg ctgcgtgctc
     4921 cacgctggaa aacactcgag ctgataaact gcgcggcgat ttttataccg tcgtatccac
     4981 ttagcagagc gcttgccttg gaactgttca aagaattcac cttcgagtcc gctcaccttc
     5041 tgcctcatgt accgacaggc cacaagtgcg ggcgcctgca tggccactcc tttcgtgccg
     5101 cgatctatat cgaaggcgat gtcgatccac acaccggttg gattcgagat ttcgccgaga
     5161 tcaaggcgat cttcaagccg atttatgagc gtctcgacca ccactacct
//
LOCUS       DATIHC010000960         3010 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_2273, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000960 DATIHC010000000
VERSION     DATIHC010000960.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3010
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2273"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..231
                     /locus_tag="VLF16_16015"
     CDS             <1..231
                     /locus_tag="VLF16_16015"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit H"
                     /protein_id="HSX72439.1"
                     /translation="TLFFGGWHGPFGILPQIPFIWFAAKTCFFIMIFILLRASIPRPR
                     YDQVMAFSWKFCLPLTLINLLVTGALVLASAQ"
     gene            245..793
                     /gene="nuoI"
                     /locus_tag="VLF16_16020"
     CDS             245..793
                     /gene="nuoI"
                     /locus_tag="VLF16_16020"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HSX72440.1"
                     /translation="MLKYIWDVVHGTWTQLRSLVMVFSHGFRKRDTLQYPEEPVYLPP
                     RYRGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAETDDGRWYPEFFRINFSRCI
                     FCGLCEEACPTTAIQLTPDFEMGEYKRQDLVYEKEDLLISGPGKNPDYNFYRVAGMAI
                     AGKPKGAAQNEAEPINVKGLLP"
     gene            804..1313
                     /gene="nuoJ"
                     /locus_tag="VLF16_16025"
     CDS             804..1313
                     /gene="nuoJ"
                     /locus_tag="VLF16_16025"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013715471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HSX72441.1"
                     /translation="MEFAFYLAAGVAVASTVMVITGTNPVHALLNLIVSLLAVASTFF
                     ALGAPFAGALEIIVYAGAIMVLFVFVVMMLNLGPAAAEQEKQWLKPGIWAGPAILSLL
                     LLGQLLYALFASPSGAAIGLETVDAKAVGVSLFGPYLLVVELASMLLLAALVAAYHLG
                     RHEAKEPTV"
     gene            1310..1618
                     /gene="nuoK"
                     /locus_tag="VLF16_16030"
     CDS             1310..1618
                     /gene="nuoK"
                     /locus_tag="VLF16_16030"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HSX72442.1"
                     /translation="MNAVPLEHGLALAAVLFSLGLIGLMVRRNILFVLMSLEVMMNAT
                     ALAFVVAGSRWVQPDGQVMFILVITLAAAEASIGLAILLQLYRRFNTLDVDAASEMRG
                     "
     gene            1615..>3010
                     /gene="nuoL"
                     /locus_tag="VLF16_16035"
     CDS             1615..>3010
                     /gene="nuoL"
                     /locus_tag="VLF16_16035"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HSX72443.1"
                     /translation="MNLLFLTLLFPLLGWFLLAFSRGRISENLAALIGVGSVGLSALT
                     AGWVILQFNLNPPEGGVFTQVLWQWMNVAGFAPSFTLYLDGLSLTMLGVVTGVGFLIH
                     LFASWYMRGEEGYSRFFAYTNLFIFSMLLLVLGDNLLVLYFGWEGVGLCSYLLIGFYF
                     KHVPNGNAALKAFIVTRVGDVFMAIGLFILFLNLGTLNIQELMVLAPQKYVAGDTWLW
                     VATLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFL
                     LTPDILELVGIVGGVTLVLAGFAALVQTDIKRILAYSTMSQIGYMFLALGVQAWDAAI
                     FHLMTHAFFKALLFLASGAVINACHHEQNIFRMGGLWKKLPLAYASFIVGGAALAALP
                     LITAGFYSKDEILWEAFASGHSELLYAGLAGAFLTSIYTFRLIFIAFHGEQKTEAHAG
                     HGVAHWLPLVTLIVL"
BASE COUNT          451 a         1046 c          895 g          618 t
ORIGIN      
        1 accctgttct tcggcggctg gcacggcccg ttcggcatcc tgccgcagat cccgttcatc
       61 tggttcgcgg ccaagacctg cttcttcatc atgatcttca tcctgctgcg cgcgtcgatt
      121 ccgcgtccgc ggtatgacca ggtcatggcg ttcagctgga agttctgcct gccgctgact
      181 ctgatcaacc tgctggtgac cggcgcgctc gtgctggcct cggcccagta aggagaaaca
      241 cgcaatgctc aagtacatat gggatgtggt gcacggcacc tggacccagc tgcgcagcct
      301 ggtcatggtc ttcagccatg gcttccgcaa gcgcgacacc ctgcaatacc cggaagaacc
      361 ggtgtacctg ccgccacgct accgtggccg catcgtgctg acccgcgacc ccgacggcga
      421 ggagcgctgc gtcgcctgca acctgtgcgc cgtggcctgc ccggtaggct gcatctcgct
      481 gcagaaggcc gagaccgacg acggccgctg gtacccggag ttcttccgca tcaacttctc
      541 gcgctgcatc ttctgcggcc tgtgcgagga ggcctgcccg actaccgcga tccagctcac
      601 cccggacttc gagatgggcg agtacaagcg ccaggatctg gtgtacgaga aggaagacct
      661 gctgatcagc ggccccggca agaacccgga ctacaacttc taccgcgtcg ccggcatggc
      721 catcgccggc aagccgaaag gcgccgcgca gaacgaggcc gaaccgatca acgtcaaagg
      781 cctgctgccc taaggagggg atgatggaat ttgctttcta cctcgccgcg ggcgttgccg
      841 tggcttctac cgtgatggtc attaccggga ccaacccggt gcatgccctg ctcaacctga
      901 tcgtctcgct actggccgtg gcctcgacct tcttcgctct gggtgcgccg ttcgccggcg
      961 ccctggagat catcgtctac gccggcgcca tcatggtgct gttcgtcttc gtggtgatga
     1021 tgctcaacct cggcccggcg gccgccgagc aggaaaaaca atggctgaaa cctggcatct
     1081 gggccggtcc cgccattctc tccctgctgc tgctgggcca gctgctgtac gccctgttcg
     1141 ccagcccgag cggcgccgcc atcggtctgg agaccgtgga tgccaaggcc gtcggcgtca
     1201 gcctgttcgg tccgtatctg ctggtggtcg aactggcctc catgctgctg ctcgccgccc
     1261 tggtcgccgc ctaccacctg ggccgccacg aagccaagga gccgaccgta tgaatgccgt
     1321 tcctctggaa cacggcctgg ccctcgccgc cgtgctgttc agcctgggcc tgatcggcct
     1381 gatggtgcgc cgcaacatcc tcttcgtgct gatgagcctg gaagtgatga tgaacgccac
     1441 cgccctcgcc ttcgtcgtcg ccggcagccg ctgggtgcag cctgatggcc aggtgatgtt
     1501 cattctggtg atcaccctgg cagccgccga ggccagtatc ggcctggcga tcctgttgca
     1561 gctgtatcgc cgcttcaaca ccctcgatgt cgacgctgcc agcgagatgc gcggatgaac
     1621 cttctatttc tcaccctgct cttccccctg ctcggctggt tcctcctggc cttctcccgc
     1681 gggcgcatct cggaaaacct ggcggcgctg atcggcgttg gctcggtcgg cctatcggcg
     1741 cttaccgccg gctgggtgat cctgcagttc aacctcaacc cgcctgaggg tggcgtattc
     1801 actcaggtgc tgtggcagtg gatgaacgtc gccggcttcg cgccgagctt caccctgtat
     1861 ctggacggcc tgtcgctgac catgctcggc gtggtcaccg gggtgggctt cctgatccac
     1921 ctgttcgcca gctggtacat gcgcggtgaa gagggttact cgcgcttctt cgcctacacc
     1981 aacctgttca tcttcagcat gctgctgctg gtgctcggcg ataacctgct ggtgctgtac
     2041 ttcggctggg aaggcgtggg cctgtgctcg tacctgctga tcggcttcta cttcaagcac
     2101 gtgcccaacg gcaatgcggc gctgaaggcc tttatcgtca cccgcgtcgg cgacgtgttc
     2161 atggccatcg gcctgttcat cctgttcctc aatctcggca ccctgaacat ccaggagctg
     2221 atggtgctgg ccccgcagaa atacgtggcc ggtgacacct ggctgtgggt cgccaccctg
     2281 atgctgctcg gcggtgcggt cggcaagtcc gcccagctgc cgctgcagac ctggctggcc
     2341 gacgccatgg ccggcccgac cccggtttcc gcactgatcc acgcggcgac catggtcacc
     2401 gccggcgtct acctgatcgc ccggacccac ggcctgttcc tgctgacccc ggacatcctc
     2461 gagttggtcg gcatagtcgg cggcgtgacc ctggtactgg ccggcttcgc cgccctggtg
     2521 cagaccgaca tcaagcgcat cctcgcctac tcgaccatga gccagatcgg ctacatgttc
     2581 cttgccctcg gcgtgcaggc ctgggacgca gcgatcttcc acctgatgac ccacgccttc
     2641 ttcaaggccc tgctgttcct cgcttccggt gcggtgatca acgcctgcca ccacgagcag
     2701 aacatcttca ggatgggcgg cctgtggaag aaactgccgc tggcctacgc cagcttcatc
     2761 gtcggtggcg ccgccctcgc cgctttgccg ctgatcacag ccggtttcta ctccaaggac
     2821 gagatcctct gggaagcctt cgccagcggc cacagcgagt tgctctacgc cggcctggcc
     2881 ggtgccttcc tgacctcgat ctacaccttc cgcctgatct tcatcgcctt ccacggcgag
     2941 cagaagaccg aagcccacgc cggccacggt gtggcccact ggctgccgct ggtgaccctg
     3001 atcgtgctgt
//
LOCUS       DATIHC010000961         2617 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18388, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000961 DATIHC010000000
VERSION     DATIHC010000961.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2617
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18388"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..367
                     /locus_tag="VLF16_16040"
     CDS             <1..367
                     /locus_tag="VLF16_16040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HSX72444.1"
                     /translation="VLASLAYHGYEGVALNHDEKSRLQHDLGDKNFMILPNHGLLTAF
                     GSIADAFLGMFTLQRACEIQVMAQSGGGELIHIPQQILDGARAMIAGVMKSPQGMGGA
                     LPWPALLRKLDQQMPGYDQ"
     gene            364..1269
                     /locus_tag="VLF16_16045"
     CDS             364..1269
                     /locus_tag="VLF16_16045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017336582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSX72445.1"
                     /translation="MSSLPGIALADWRAQGRGFSFNGQAIRYWVAGEGEPLLLIHGFP
                     TASWDWHYLWQPLAARFRVIACDMLGFGYSAKPRGHRYSLLEQADLQQALLAHLGIAE
                     PVHMLAHDYGDSVAQELLARHQERRIHVASCVLLNGGLFPETHRPVLMQKLLLSPLGP
                     LLGGFFSRAKLKANLTKVFGPQTPPGESELDAFWELISHNDGPKVMHLLIRYILDRRV
                     NRERWVAAMQETGVPMRVIDGALDPISGAHMVERYRELIESPDTVLLPAIGHYPQTEA
                     PAEVLAHYLEFRERLEAIACKDALC"
     gene            1248..1778
                     /locus_tag="VLF16_16050"
     CDS             1248..1778
                     /locus_tag="VLF16_16050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003462426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1569 domain-containing protein"
                     /protein_id="HSX72446.1"
                     /translation="MQRRTLLKGAAVGGVVALGAGFWALPSGAAPAALSLDGARMVLK
                     GFEGKTLTSIEGWTPTEVFNHCAQSIEYSLDGYPELKPAWFRHSVGPAAFAVFSARGA
                     MRHSLTEAIPGAAPLAEPASQDAALQRLQAAFERFAAHTGALEPHFAYGALDHQEYAQ
                     AHVMHLYNHLSLIRQA"
     gene            1997..>2617
                     /locus_tag="VLF16_16055"
     CDS             1997..>2617
                     /locus_tag="VLF16_16055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72447.1"
                     /translation="MNKKPLSALVFSALLTGVSVPALAETDSTGPTNPGATSPTPAEV
                     PGGTSPNGTDSGTGTGTGTGTGTGTGTFTPGSPTGNGTGTGTGTNGTGTGLGNGTGTG
                     TGTGTGIGTGTGTGTDSGTGTGTGTGTGSNGGIGTGTGTGTGTGTSTGTGSGTTGTGT
                     TGGTGTGSTGGPTGGTGTGTGGTGGSTGGGTTGGGSTGGGSTGGGST"
BASE COUNT          414 a          918 c          875 g          410 t
ORIGIN      
        1 cgtcctcgcc agcctggcct accacggcta cgagggtgtg gcgctgaacc acgacgagaa
       61 gtcgcgcctg cagcatgacc tgggcgacaa gaacttcatg atcctgccca accacggtct
      121 gctcaccgcc ttcggcagca tcgccgacgc cttcctcggc atgttcaccc tgcagcgcgc
      181 ctgcgagatc caggtgatgg cgcagagtgg cggcggcgag ctgatccaca ttccgcagca
      241 gatcctcgac ggcgcgcggg cgatgatcgc cggcgtgatg aagagcccgc agggcatggg
      301 gggcgcgctg ccgtggccgg cgctgctgcg caagctcgat cagcagatgc cgggctacga
      361 ccagtgagtt cgctgccggg catcgccctg gccgactggc gggcgcaagg gcgcggcttc
      421 agcttcaacg gccaggccat ccgctactgg gtggcgggcg agggcgagcc gctgctgctg
      481 atccacggct tccccaccgc cagctgggac tggcattacc tgtggcagcc cctggcggcc
      541 aggttccggg tcatcgcctg cgacatgctc ggcttcggct attcggccaa gccgcgcggt
      601 catcgctaca gcctgctgga gcaggccgac ctgcagcagg cgctgctggc ccacctgggc
      661 atcgccgagc cggtgcatat gctggcgcat gactatggcg acagcgtggc ccaggagctg
      721 ctagcgcggc atcaggagcg gcgcatccat gtggccagct gcgtgttgct caacggcggc
      781 ctgttccccg agacgcaccg cccggtgctg atgcagaagt tgctgctcag cccgctgggt
      841 ccgttgctgg gtgggttttt ctcgcgggcc aagctcaagg ccaacctgac caaggtgttc
      901 ggcccgcaga cgccgcccgg cgagagcgag ctggacgcct tctgggagct gatctcgcac
      961 aacgacggac ccaaggtcat gcacctgctg attcgctaca tcctcgaccg ccgcgtcaac
     1021 cgcgagcgct gggtggcggc gatgcaggaa acgggcgtgc cgatgcgggt gatcgacggc
     1081 gcgctcgacc cgatttccgg ggcgcacatg gtcgagcgct atcgtgagct gatcgagagc
     1141 cccgacacgg ttttgctgcc ggccataggc cactatccgc agaccgaggc acccgcagag
     1201 gtgcttgccc attatctgga gttccgtgag cgcctggagg ccatcgcatg caaagacgca
     1261 ctctgttgaa aggtgccgcc gtaggcggtg tcgtggccct gggtgccggc ttctgggcgc
     1321 tgcccagcgg tgctgcgccg gcggcgctga gtctggacgg cgcgcgcatg gtgctgaagg
     1381 gcttcgaggg caagaccctg accagcatcg agggctggac cccgaccgag gtgttcaacc
     1441 actgcgcgca gagcatcgag tattcgctgg acggctaccc cgagctgaag ccggcctggt
     1501 ttcgccacag cgtcgggcct gccgccttcg ccgtgttcag cgcccgcggc gccatgcgcc
     1561 actcgctgac ggaggccatt cccggcgccg cgccactggc cgaaccggcc agccaggacg
     1621 ccgcgctgca gcgcctgcag gccgccttcg agcgcttcgc cgcccacacc ggcgcgctcg
     1681 agccgcactt cgcctatggc gccctcgatc accaggagta cgcccaggcc cacgtgatgc
     1741 acctgtacaa ccatctcagc ctgatccgcc aggcctgaat caggccccgc gccgggccgt
     1801 tccgtttgcg ccatcgcccc gggtctggaa aggcttttcc ggcccgggcg cgcaatcatc
     1861 ttctccgcgt tttctgccgt ttcgctcagt ctgtcggcac gttttccgag gattgccgct
     1921 gatcaggttt gtcgaacctc tcgcaccgct gctcactcgt tttcttcgta acacattcat
     1981 ttttcgaggt gagcccatga acaagaaacc gctttcggcg ttggtgttca gcgccctgtt
     2041 gaccggcgtc tccgtacccg cgctggccga gaccgactcc acaggcccga ccaatccggg
     2101 agcgacctcg ccgaccccgg ccgaagtccc cggcggcacc tcgccgaacg gcaccgatag
     2161 cggcaccggc actggtaccg ggaccggcac cgggaccggc accggcacct ttacaccggg
     2221 ctcgccgacc ggcaatggca ccggcactgg caccggcacc aacggtaccg gcaccggcct
     2281 gggcaacggg actggtacag gcaccggtac gggcacaggc attgggaccg gcaccggaac
     2341 gggtaccgac agcggcaccg gcacgggaac tggcacggga accggtagta acggcgggat
     2401 tggcaccggg accggcaccg gcactggtac gggtaccagc actggcactg gctccggaac
     2461 cacgggcacc ggcaccactg gcggcaccgg caccggctcg accggtggtc ctaccggcgg
     2521 caccggtacc ggcaccggcg gcacgggtgg tagcaccggc ggcggtacta ccggaggcgg
     2581 cagcactggc ggcggcagca ctggcggtgg ctccacc
//
LOCUS       DATIHC010000962         2208 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27837, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000962 DATIHC010000000
VERSION     DATIHC010000962.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2208
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27837"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..391)
                     /locus_tag="VLF16_16060"
     CDS             complement(<1..391)
                     /locus_tag="VLF16_16060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003285367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase N-terminal
                     domain-containing protein"
                     /protein_id="HSX72448.1"
                     /translation="MTTFWSWYITLLTLGSLVALLWLLFATRKGQRPGTTDQTLGHAF
                     DGIEEYDNPLPKWWFMLFLGTLVFAGAYLLLYPGLGNFAGTLPGYEGGWTQTKQWQRE
                     MDRADQTYGPIYASYAKMPLEQVAQDPK"
     gene            complement(398..1012)
                     /gene="ccoO"
                     /locus_tag="VLF16_16065"
     CDS             complement(398..1012)
                     /gene="ccoO"
                     /locus_tag="VLF16_16065"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HSX72449.1"
                     /translation="MSSKHEILEKNVGLLAIAMVLAVSIGGLTQIVPLFFQDVVNEPV
                     TGMKPYTALQLEGRDIYIREGCVGCHSQMIRPFRAETERYGHYSVAGESVWDHPFLWG
                     SKRTGPDLARVGGRYSDDWHRAHLYNPRNVVPESKMPAYPWLVENKLGGEDSAAKMGA
                     LRTLSVPYSDEDIAGAQESVKGKTEMDALVAYLQVLGTSLKNKR"
     gene            complement(1012..>2208)
                     /gene="ccoN"
                     /locus_tag="VLF16_16070"
     CDS             complement(1012..>2208)
                     /gene="ccoN"
                     /locus_tag="VLF16_16070"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012018856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HSX72450.1"
                     /translation="QRTCQTRLISDKLAAFTFWGWQLVIVLAAISLPLGWTSSKEYAE
                     LEWPIDILITIVWVAYALVFFGTLLKRKTKHIYVGNWFFGGFILTVAMLHIVNNLELP
                     VSLTKSYSLYAGATDAMVQWWYGHNAVGFFLTAGFLGMMYYFVPKQAERPVYSYRLSI
                     VHFWALITLYIWAGPHHLHYTALPDWAQSLGMVMSLVLLAPSWGGMINGMMTLSGAWH
                     KLRTDPILRFLVVSLAFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHAGALGWVAMI
                     SIGSLYHLIPKVFGREQMHSLALINSHFWLATIGTVLYIASMWVNGITQGLMWRAVND
                     DGTLTYSFVEALEASHPGFVIRVAGGAIFLFGMVLMAWNTWLTVRAAQPAEYDAEALI
                     PAEVAH"
BASE COUNT          392 a          651 c          782 g          383 t
ORIGIN      
        1 ccttcgggtc ctgagcgacc tgttccagcg gcatcttggc gtagctggcg tagatcgggc
       61 cgtaggtctg gtcggcgcga tccatctcgc gttgccactg tttggtctgg gtccagccgc
      121 cttcgtaacc cggcagcgtg ccggcgaagt tgccgaggcc cgggtacagc agcaggtagg
      181 cgccggcgaa gaccagggtg ccgaggaaca gcatgaacca ccacttgggc agcgggttgt
      241 catattcctc gataccgtcg aaggcgtggc ccagggtctg gtcggtggtg ccggggcgct
      301 ggcccttgcg ggtggcgaac agcagccaca gcagagcgac caggctgccc agggtgagca
      361 gggtgatata ccagctccag aaagtggtca tgtccgatta cctcttgttc ttcaggctgg
      421 tgccgagcac ttgcagatag gccaccaggg cgtccatctc ggtcttgccc ttgaccgact
      481 cctgggcgcc ggcgatgtct tcgtcgctgt agggcacgct gagggtgcgc agggcgccca
      541 tcttggcggc actgtcctcg ccgccgagct tgttctcgac cagccagggg taggccggca
      601 tcttcgactc cggcaccacg ttgcgcgggt tgtacaggtg ggcgcggtgc cagtcgtccg
      661 agtagcggcc accgacgcgg gccaggtccg gaccggtacg cttggagccc cacaggaacg
      721 ggtggtccca gacgctctcg ccagccactg agtagtggcc gtaacgctcg gtctcggcac
      781 ggaacggacg gatcatctgc gagtggcagc cgacgcagcc ttcgcggatg tagatgtcac
      841 ggccttccag ctgcagcgcg gtgtagggct tcatgccggt gaccggctcg ttgaccacgt
      901 cctggaagaa cagcgggacg atctgggtca ggccgccgat gctcaccgcc aggaccatgg
      961 cgatggccag caggccgacg ttcttctcaa gtatttcgtg cttgctgctc atcagtgggc
     1021 gacctctgcg ggaatcaggg cttctgcgtc gtattcggcc ggctgggcgg cgcgcacggt
     1081 cagccaggtg ttccaggcca tcagcaccat gccgaagagg aagatggcgc cgccggcgac
     1141 gcgaatgacg aagcctgggt ggctggcctc gagcgcctcg acgaaggagt aggtgagggt
     1201 gccgtcgtcg ttcacggcgc gccacatcag gccctgggtg atgccgttga cccacatgga
     1261 ggcgatgtac agcacggtgc cgatggtcgc gagccagaag tgcgagttga tcagcgcgag
     1321 gctgtgcatc tgctcgcggc cgaacacttt cgggatcagg tggtacagcg agccgatgga
     1381 gatcatcgct acccagccca gcgcaccggc gtgtacgtgg ccgatggtcc agtcggtgta
     1441 gtgcgacagg gcgttgacgg tcttgatggc catcatcggg ccttcgaacg tggacatgcc
     1501 gtagaaggcg agggagacca ccaggaagcg caggatcggg tcggtgcgca gcttatgcca
     1561 ggcgcccgag agggtcatca tgccgttgat catgccgccc cagctcggtg ccagcagcac
     1621 cagggacatg accatgccga gggactgggc ccagtccggc agggcggtgt agtgcaggtg
     1681 gtgcgggccg gcccagatgt acagggtgat caacgcccag aagtgcacga tggacaggcg
     1741 ataggaatac accgggcgct cggcctgctt gggcacgaag tagtacatca tccccaggaa
     1801 gccggcggtg aggaagaagc ccaccgcgtt gtggccgtac caccactgga ccatggcgtc
     1861 ggtggcgccg gcgtacagcg agtaggattt ggtcaggctg accggcagtt ccaggttgtt
     1921 gacgatgtgc agcatcgcca cggtcaggat gaagccgccg aagaaccagt tgcccacgta
     1981 gatgtgcttg gtcttgcgct tgagcagcgt gccgaagaac accagcgcgt aggcgaccca
     2041 gacgatggtg atcaggatgt cgatcggcca ctccagctcg gcgtactcct tggaggaggt
     2101 ccagcccagc ggcaggctga tggcggcgag gacgatcacc agctgccagc cccagaaggt
     2161 gaaggcggcg agcttgtcgg agatcaggcg ggtctggcag gtacgctg
//
LOCUS       DATIHC010000963         2475 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_22961, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000963 DATIHC010000000
VERSION     DATIHC010000963.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2475)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2475)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2475
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22961"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..705)
                     /locus_tag="VLF16_16075"
     CDS             complement(<1..705)
                     /locus_tag="VLF16_16075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HSX72451.1"
                     /translation="MTDIRSWTREAVRIIEADFQRSADTHLIPLALPGLPGVDLYFKD
                     ESSHPTGSLKHRLARSLFLYALCNGWLRPGAPVIEASSGSTAISEAYFARLLGLPFIA
                     VVPASTAREKLAQIAFYGGQTHLVEDPTRIHAESLRLAQESGGHFMDQFTYAERATDW
                     RANNNIAESIFQQLRHERFPEPSWLVSSPGTGGTLATLGRYVRYRQYATRVLCADAER
                     SVFFDSYVSGDRDLTMD"
     gene            complement(716..1621)
                     /locus_tag="VLF16_16080"
     CDS             complement(716..1621)
                     /locus_tag="VLF16_16080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012018019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HSX72452.1"
                     /translation="MARQGHVIAMACLVLAMALWGSSFIALKFAFAELPPMWVIFGRM
                     ALGSLVFLLAWRWRGRLDYRPGDWRYLLALAACEPCLYFIFEALALQHTSAAQAGMIT
                     ALLPLLVAMGAFAFLRERVAGTTWAGFLLAVLGAVWLSLAGEADASAPAPLLGNFYEF
                     VAMLCATGYTLLLKFLSERYSPFILTAMQAFIGSLFFLPLALFTEPLPTTFGVLGVGS
                     VVYLGLVVTVGAYGLYNFGVSRLPASQASGFTNLIPVFTLIFAALLLDERLSPPQYAA
                     AALVFLGVALSQWRTRAPAPAGILD"
     gene            complement(1706..2020)
                     /locus_tag="VLF16_16085"
     CDS             complement(1706..2020)
                     /locus_tag="VLF16_16085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72453.1"
                     /translation="MKVALRAFWLFSLGSAVTLALLGLAFRMLIWESWEPHPGDPYGP
                     SDLIDMLFVVLVLLLGGLSALFGTLLLIWPPRRPLMPLAGLAVVLAFHLLHGVVPTLR
                     LW"
     gene            complement(2017..2349)
                     /locus_tag="VLF16_16090"
     CDS             complement(2017..2349)
                     /locus_tag="VLF16_16090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051139 - metal cation:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0098662 - inorganic cation transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit G"
                     /protein_id="HSX72454.1"
                     /translation="MSLWLEILISALLLLGSGFVLIGSLGLYRLPDFFTRLHGPTKAT
                     TLGVGAMVVGSLIFFSAGEKGLSLHELLISLFLFISAPVSAYMLAKAAVLQELPLEPK
                     TRGKPWEQ"
     gene            complement(2346..>2475)
                     /locus_tag="VLF16_16095"
     CDS             complement(2346..>2475)
                     /locus_tag="VLF16_16095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015075 - monoatomic ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="monovalent cation/H+ antiporter complex subunit
                     F"
                     /protein_id="HSX72455.1"
                     /translation="IILYGIWKGSELFFEVALLIAVLGFVSTVAVAKYMLRGDIIE"
BASE COUNT          481 a          805 c          870 g          319 t
ORIGIN      
        1 gtccatggtc aggtcgcggt cgccgctgac gtagctgtcg aagaacaccg aacgctccgc
       61 gtcggcgcac agcacgcgcg tcgcgtactg gcggtagcgc acgtagcggc ccagcgtcgc
      121 cagcgtgccg ccggtgccgg ggctcgatac cagccagctc ggttcgggga agcgctcgtg
      181 gcgcagctgc tggaagatcg actcggcgat gttgttgttc gcccgccagt cggtggcccg
      241 ctcggcatag gtgaactggt ccatgaagtg gccgccgctt tcctgcgcca ggcgcaggga
      301 ttcggcatgg atgcgcgtcg ggtcctcgac caggtgggtc tggccaccgt agaaggcgat
      361 ctgcgccagc ttctcgcgcg ccgtgctggc gggcaccacg gcgatgaagg gcaggcccag
      421 cagccgcgcg aaataggcct cggagatggc ggtggaaccg ctggaggcct cgatcaccgg
      481 cgcaccgggc ctgagccagc cgttacacag ggcgtagagg aacaacgagc gcgccaggcg
      541 gtgcttgagg ctgcccgtgg ggtggctgga ttcgtccttg aagtacaggt cgacgccggg
      601 cagccccggc agggccagcg gaatcaggtg ggtgtcggcg ctgcgctgga agtccgcctc
      661 gatgatgcgc accgcctcgc gggtccagct gcgaatgtcg gtcatgtctc gctcctcaat
      721 ccagaatgcc ggccggcgcg ggcgcgcggg tgcgccactg gctgagcgcc acgccgagga
      781 acaccagcgc cgccgccgcg tattgcggcg ggctgagccg ctcgtcgagc agcagcgcgg
      841 cgaagatcag ggtgaatacc ggaatcaggt tggtgaagcc cgaggcctgg ctggccggca
      901 ggcgactgac gccgaagttg tacaggccat aggcgccgac cgtcaccacc aggccgaggt
      961 agaccaccga accgacgccg agcacgccga aggtggtcgg cagaggctcg gtgaacagcg
     1021 ccagtggcag gaagaacagc gaaccgataa atgcctgcat ggccgtgagg atgaacggcg
     1081 agtagcgctc ggagaggaac ttcagcagca gggtgtagcc ggtggcgcag agcatggcaa
     1141 cgaattcgta gaagttgccc agcagcggcg ccggcgcgct ggcgtcggcc tcaccggcca
     1201 ggctcagcca cacggcaccg agcaccgcca gcaggaagcc ggcccaggtg gtgcccgcga
     1261 cccgctcgcg caggaaggcg aaggcgccca tggccaccag cagcggcaac agcgcggtga
     1321 tcatgcccgc ctgggcggcg ctggtgtgct gcagcgccag ggcctcgaag atgaagtaca
     1381 ggcacggctc gcacgcggcc agggcgagca ggtagcgcca atcgccgggg cggtagtcga
     1441 gacgcccgcg ccagcgccac gccaacagga acaccaggct gccgagggcc atgcggccga
     1501 agatcaccca catcggcggc agctcggcga aggcgaactt gagggcgatg aaggagctgc
     1561 cccacagggc catggccagc accaggcacg ccatcgcgat cacatgtccc tgccgggcca
     1621 tcaccgtcac ctctgcgaga aaacgtcagt gtaggtggcg tgcctgggtg ccgacaggca
     1681 cagcggcagg aagaaactgt gcgcctcacc agagccgcag ggttggcacc acgccatgca
     1741 gcaggtgaaa ggccagtacc acggccagcc ctgcaagtgg cataagcggg cggcgcggcg
     1801 gccagatcag cagcagcgtg ccgaatagcg ccgacagccc gcccaagagg agcaccagta
     1861 cgacaaatag catgtcgatc aggtcggacg ggccgtaggg atcacccgga tgcggttccc
     1921 agctttccca gatcaacatg cggaacgcca ggcccagcag cgccagcgtc accgccgacc
     1981 cgagcgagaa cagccagaac gccctgagcg cgaccttcac tgctcccaag gcttgccgcg
     2041 cgttttcggc tccagcggca gctcctgcag caccgccgcc ttggccagca tgtaagcgct
     2101 gaccggggcg ctgatgaaca ggaacaggct gatcagcagt tcgtgcaggc tcaggccctt
     2161 ctcgccggcg ctgaagaaga tcagcgagcc caccaccatg gcgccgacgc ccagggtggt
     2221 ggccttggtc ggcccgtgca ggcgggtgaa gaagtccggc aggcgataca ggccgaggga
     2281 gccgatcagg acgaagccgc tgccgagcag cagcagcgcg gagatgagga tttccagcca
     2341 caggctcatt cgatgatgtc tcctcgcagc atgtacttgg ccaccgccac ggtactgacg
     2401 aagccgagca cggcgatcag cagcgcgacc tcgaagaaca gctcgctgcc cttccagatg
     2461 ccgtacagga tgatc
//
LOCUS       DATIHC010000964         2577 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27838, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000964 DATIHC010000000
VERSION     DATIHC010000964.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2577
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27838"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..628
                     /locus_tag="VLF16_16100"
     CDS             <1..628
                     /locus_tag="VLF16_16100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013715725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="polysaccharide lyase family 7 protein"
                     /protein_id="HSX72456.1"
                     /translation="LSEGYSSQYFRPQGGRSVRFWVPVNGSHTRHSRYPRSELRETWP
                     NGELRNWYHGDADNLLSAVLTVNQVPSKNKLVIGQIHSINRPGDVGEPLVKLQYHYRP
                     ELNSGRIEALVRKHPDDKKVQNIALINDVTLDERFAYRLRLTASGRLGITVYSDDDNG
                     AYYRKIASGWSRQQLYFKAGAYAQDNYGSSAEGGRATFYHLNTEHRRP"
     gene            740..1060
                     /locus_tag="VLF16_16105"
     CDS             740..1060
                     /locus_tag="VLF16_16105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2025 family protein"
                     /protein_id="HSX72457.1"
                     /translation="MSITSSTICSAADALQGLVGFNAKTGLHIVRFSEDSFGLDVTED
                     SIQPCAEFVWQPLKGALMTLSRERLGMLLEQRIDERLNISEPLRLYLRRSDLPEIIAE
                     RRKA"
     gene            1198..2049
                     /locus_tag="VLF16_16110"
     CDS             1198..2049
                     /locus_tag="VLF16_16110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72458.1"
                     /translation="MPTRRLSWLLALLLSAPPCLAADGVLRYPRASVGEEFRPVYPLA
                     QLQLALDKAGSSLRIVPSDQPMEQQRALLGLEHGESVDVVWTMTSIERERRLLPVRIP
                     LDKGLFGWRLALVRADRPQLLGEVRTLADLRQLSAGQGHDWPDTQILRSLGLPVETSS
                     SYDSLFLMLHAGRFDYFPRSVLEIDAELQHPNAAGLAVDRHLVLHYPTALYFFFSPDD
                     PQLAETVRQGLELAIADGSFERLFRQYHGADLTRAGLERRHIIALDNALLPAQTPLQR
                     RELWYRP"
     gene            complement(2062..>2577)
                     /locus_tag="VLF16_16115"
     CDS             complement(2062..>2577)
                     /locus_tag="VLF16_16115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase"
                     /protein_id="HSX72459.1"
                     /translation="AMHYLQDLTQPYHASVLPGVDTAGMVLIAAKAEAGFPEDREAAI
                     QRVADRHTAIEQYQFDRMQGLLAEKRFEQPLLAAYGERALDGDYPAFDVDYTAQVVAA
                     ESHARADEFDALIGDWMARGAAAKGFSDGNQLQAVQPDPALEKLLVELFRHFGAHSRN
                     ALKGTLPAAGE"
BASE COUNT          427 a          947 c          819 g          384 t
ORIGIN      
        1 cctgagcgag ggctacagca gccagtactt ccgcccccag ggcggtcgca gcgtgcgctt
       61 ctgggtgccg gtgaacggct cgcacacccg ccattcacgc tacccgcgca gcgagctgcg
      121 cgagacctgg ccgaacggcg agctgcgcaa ctggtaccac ggcgacgcgg acaacctgct
      181 cagcgccgtg ctgacggtca accaggtgcc gagcaagaac aagctggtga tcggtcagat
      241 ccacagcatc aatcgccccg gcgatgtcgg cgagccgctg gtgaagctgc agtaccacta
      301 ccgtcccgag ctcaacagcg ggcgcatcga ggccctggtg cgcaagcatc ccgatgacaa
      361 gaaggtgcag aacatcgccc tgatcaacga cgtgaccctc gacgagcgct tcgcctaccg
      421 gctgcgcctg accgccagcg ggcggctggg catcaccgtg tacagcgacg acgacaacgg
      481 cgcctactac cgcaagatcg cctccggctg gagccgccag cagctctact tcaaggccgg
      541 cgcctacgcc caggacaact acggcagcag cgccgagggc ggccgggcca ccttctacca
      601 cctcaacacc gagcaccgtc gaccctgagc cgcgaacttg atccaaagca atgcgcgacg
      661 ccggccatcg cctaggatgg ccggcaaaaa gcatccgcct gccctgtgtg cgaaccccga
      721 tcaacgacag gaggtttgca tgagcatcac atcgtccacc atctgctccg ccgccgacgc
      781 cctgcagggc ctggtcggct tcaacgccaa gaccggcctg cacatcgtgc gcttcagcga
      841 ggattccttc ggcctcgatg tcaccgaaga cagcatccag ccctgcgccg aattcgtctg
      901 gcagccgctc aagggggcgc tgatgacgct gagccgcgaa cgcctgggca tgcttctgga
      961 gcagcgcatc gacgagcgcc tgaacatctc cgaaccactg cgcctgtacc tgcgccgcag
     1021 cgacctgccg gaaatcatcg ccgagcgtcg caaggcctga tgcgggcgcc gcgcaccgcc
     1081 ggtgcgcttc gtcgcctacc tcgacgggtc ggagtccaga aaccgcatcg gctggcataa
     1141 tgcgcgctcg ccgatgcgca gccgcatcgc ccaccgaccg gaaaaggatt gccgttgatg
     1201 ccgacaaggc gtctgtcctg gctgctggcc ctgctgctga gcgccccgcc ctgcctggcc
     1261 gcggacggcg tgctgcgcta cccgcgcgcc agcgtcggcg aggaattccg tcccgtctac
     1321 ccgctggccc agctgcaact ggccctggac aaggccggca gttcgctgcg catcgtcccc
     1381 tcggaccagc ccatggaaca gcaacgcgcc ctgctcggcc tggagcacgg cgagtcggtg
     1441 gacgtggtct ggaccatgac cagcatcgag cgggagcggc gcctgctgcc agtgcgcatc
     1501 ccgctcgaca agggcctgtt cggctggcgc ctggccctgg tgcgagcgga tcggccgcag
     1561 ctgctgggcg aggtacgcac cctggccgac ctgcggcagc tgagcgcggg ccagggccac
     1621 gactggccgg acacccagat cctgcgcagc ctgggcctgc cggtggaaac cagctccagc
     1681 tacgacagcc tgttcctcat gctgcacgcc ggccgcttcg actacttccc gcgctccgtg
     1741 ctggagatcg acgccgagct gcaacacccg aacgccgccg gcctggcggt ggaccggcac
     1801 ctggtgctgc actatcccac cgcgctgtat ttcttcttct cgccagacga tccgcaattg
     1861 gcggaaaccg tgcgccaggg cctggagctg gctatcgccg acggctcctt cgagcgcctg
     1921 ttccgccagt accacggcgc cgacctgacg cgcgccggac tcgagcggcg acacatcatc
     1981 gcgctggaca acgccctgct gccggcgcag acgccgctgc aacggcgcga gctgtggtac
     2041 cgcccctagg cgccgcccac ctcattcccc ggcggcgggc agcgtgccct tcagcgcatt
     2101 gcggctgtgc gcgccgaagt ggcggaacag ctcgaccagc agcttttcca gcgcagggtc
     2161 gggctgcacg gcctgcaact ggttgccatc gctgaagccc ttggccgcgg cgccgcgcgc
     2221 catccagtcg ccgatcagtg cgtcgaactc gtcggcacgc gcgtgggatt cggccgccac
     2281 cacctgggcc gtgtagtcta cgtcgaatgc cggatagtcg ccgtccagcg cgcgctcgcc
     2341 gtaggccgct agcagcggct gctcgaagcg cttctccgcg agcagcccct gcatgcggtc
     2401 gaactggtac tgctcgatgg cggtgtgacg gtccgcgacg cgctggatcg ccgcctcacg
     2461 gtcctcggga aagcccgcct cggccttcgc cgcgatcagc accatgccgg cggtatccac
     2521 ccccggcagc acgctggcgt ggtacggctg ggtgaggtcc tgcaggtagt gcatggc
//
LOCUS       DATIHC010000965         2584 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27839, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000965 DATIHC010000000
VERSION     DATIHC010000965.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2584
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27839"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(153..911)
                     /locus_tag="VLF16_16120"
     CDS             complement(153..911)
                     /locus_tag="VLF16_16120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003237860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSX72460.1"
                     /translation="MNSTITLITGASRGLGKNAALHLARHGHDLILTYNSGRAEAEAL
                     VAEIRALGRQAVALQLDVGRSAGFADFAERVRQALAHTWQRERFDALVNNAGIGIHVP
                     FAETSEEQFDQLLDIHLKGTFFLTQKLLPLLADGGRILNVSSGLARFSLPGYAAYAAM
                     KGGIEVLTRYLAKELGARGIRANTIAPGAIETDFGGGAVRDNRELNAAIAGQTALGRV
                     GLPDDIGSAIAMLLSSEAGWVNAQRVEVSGGMLV"
     gene            1027..1947
                     /locus_tag="VLF16_16125"
     CDS             1027..1947
                     /locus_tag="VLF16_16125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008084907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSX72461.1"
                     /translation="MDRLHAMLAFVRVAELASFTRAADSLGQPKASVSLLVQQLENQL
                     GARLLHRTTRRVSLTQDGQACYERCKDLLADSEEIEAMFQLDASQLRGRLRVDMNQAV
                     ARDLVLPQLAEFLAAHPQLQLELSCTDHRVDLIREGFDCVVRVGGQVDPGLIARPLGQ
                     MEQINCASPAYLQRFGTPRGLEDLAEHRLVHYVPNLGAKADGWEYRRDGETISLDMPG
                     ALTVNSTDAYSQACLAGLGLIQVPRVGVLPYLADGRLVEVLPEYRAAPMPVFLLYPHR
                     RNLSKRVQVFMDWLAGLVSPYVAEQKPAAR"
     gene            complement(1883..>2584)
                     /locus_tag="VLF16_16130"
     CDS             complement(1883..>2584)
                     /locus_tag="VLF16_16130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009616009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HSX72462.1"
                     /translation="VLLGVIKFGLLFVGMHLGMPAGLSSLVLQSQVFFTVLIAAVLLG
                     ERPSARAVAGLLLAAGGLVLIGLQRPLGDSLLAFALVIAAALAWAFSNIATKRSGASD
                     MLRLICWVSLVPVLPLLGLSWVFEGPQAMGTALEHLSWRGIGALLYIAFLATTVGFAI
                     WSFLLRRYPASLVTPFALAVPVSGLLAGWLLLGEALTVQGWLACALVFGGLAITVLPA
                     SVLRRRGSPARPASP"
BASE COUNT          454 a          905 c          867 g          358 t
ORIGIN      
        1 aagccacaaa acgccgcgtc tgcctgagcg attctcattg gcgcaaagcc gcgtggttgc
       61 tgggctgcgt ggaattcagg caataacgca aatcactgtc ggcaagcgtc gccccgatca
      121 tgacggatcg aggcgattca catgcgccgc ggtcagacca gcatgccgcc ggagacctcc
      181 acccgctgcg cgttgaccca accggcctcg ctcgacagca gcatggcgat ggcgctgccg
      241 atatcgtccg gcaggccgac ccggcccagc gccgtttgcc cggcgatggc cgcgttgagc
      301 tcgcggttgt cgcgcaccgc accgccgccg aagtcggtct cgatggcacc gggggcgatg
      361 gtgttagcgc ggataccgcg ggcgcccagc tccttggcca ggtagcgggt cagcacctcg
      421 atcccgccct tcatcgctgc gtacgccgca tagcccggca aggagaaacg cgccaggccg
      481 ctggagacgt tgaggatgcg gccgccatcg gccagcagcg gcaacagctt ctgggtgagg
      541 aagaaggtgc ccttcaggtg gatgtccagc aactggtcga actgctcctc gctggtctcg
      601 gcgaagggca cgtggatgcc gatgccggca ttgttcacca gcgcatcgaa gcgctcgcgc
      661 tgccaggtgt gggccagcgc ctggcgcacc cgctcggcga aatcggcgaa gccggcgctg
      721 cgacccacgt ccagctgcag cgccacggcc tggcggccca gggcacggat ctcggcgacc
      781 agcgcctcgg cctccgcgcg gccgctgttg taggtgagga tcaggtcgtg gccatggcgc
      841 gccaggtgca gggcggcgtt tttacccaag ccgcggctgg ctccggtgat cagggtgatg
      901 gtgctgttca tctggtttac ctcgtcggtg ggtgactgac gaggctcaga ctattgatcg
      961 aacttaatcg gataaatcag acgatcctgt ttagactgtc caaaaatcac caacaatgga
     1021 ctcgccatgg acagactgca tgccatgctc gccttcgtcc gggtcgccga actggcgagc
     1081 ttcacccgcg ccgccgacag tctgggccag cccaaggcca gcgtctcgct gctggtgcag
     1141 caactggaga accagctcgg cgcccgactg ctgcaccgca ccacgcggcg ggtgagcctg
     1201 acccaggacg gccaggcctg ctacgaacgc tgcaaggacc tgctggccga ctccgaggag
     1261 atcgaggcga tgttccagct ggatgccagc cagctgcgcg gtcgcctgag ggtcgacatg
     1321 aaccaggccg tggcgcgcga cctggtgctg ccgcagctgg ccgaattcct cgccgcccac
     1381 ccgcagctgc aactcgagct gagctgtacc gaccaccgcg tcgacctgat ccgcgagggg
     1441 ttcgactgcg tggtgcgggt cggcggccag gtcgaccccg gcctgatcgc ccgcccgctg
     1501 gggcagatgg agcagatcaa ctgcgccagc cccgcgtacc tccagcgctt cggcacccct
     1561 cgcggcctgg aggacctggc cgagcatcgc ctggtgcact acgtgccgaa cctgggcgcc
     1621 aaggccgatg gctgggaata ccgacgcgac ggcgaaacga tcagcctgga catgcccggc
     1681 gcgctgacgg tgaacagcac cgacgcctac agccaggcct gcctggccgg gctcggcctg
     1741 atccaggtgc cgcgcgtggg cgtgctgccc tacctggccg acggtcgtct ggtggaggtg
     1801 ctgcccgagt accgcgccgc gcccatgccg gtgttcctgc tctacccgca ccgacgcaat
     1861 ctgtcgaagc gggtgcaggt gttcatggac tggctggccg ggctggtgag cccctacgtc
     1921 gcagaacaga agccggcagc acggtgatcg ccaggccgcc gaacaccagc gcgcaggcca
     1981 gccagccctg cacggtcagc gcctcgccca gcagcagcca gccggccagc aggccggaca
     2041 ccggcaccgc cagggcgaag ggtgtgacca ggctggccgg gtaacggcgc agcaggaagc
     2101 tccagatggc gaagccgacc gtggtggcga ggaaggcgat gtacagcaga gcgccgatgc
     2161 cacgccagct caggtgctcg agcgccgtac ccatcgcctg cggcccctcg aacacccagg
     2221 acagccccag cagcggcagc accggcacca ggctcaccca gcagatcagg cgcagcatgt
     2281 cgctggcccc ggagcgcttg gtggcgatgt tggagaaggc ccaggccagc gccgcggcga
     2341 tcaccagggc gaaggccagc aggctgtcgc ccagcggccg ctgcaggccg atcagcacca
     2401 gcccgccggc cgccagcagc agcccggcca cggcccgcgc gctgggccgc tcgccgagca
     2461 gcaccgcggc gatcaacacg gtgaagaaca cctgactctg cagcaccagc gacgacagcc
     2521 cggccggcat gcccaggtgc atgccgacga acaacaggcc gaacttgatc accccgagca
     2581 gcac
//
LOCUS       DATIHC010000966         1556 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18400, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000966 DATIHC010000000
VERSION     DATIHC010000966.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1556
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18400"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..828
                     /locus_tag="VLF16_16135"
     CDS             <1..828
                     /locus_tag="VLF16_16135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013791925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSX72463.1"
                     /translation="RQDWYDVSIDDYQQGTKDANTGDKLSGHLGVLYAFENGLSPYLS
                     YSTSFNPTSNYSDGAQILKPTTGEQWEAGLKFQPPGTDDLYTISFFTIEMENLFAKEN
                     SFTDSYEYKGVGGIDSKGVELEARVQVTDNLQLMGSYTYNDVEYSKSYFVFDALGGVE
                     DAKGNTPYQTPEQMASLWADYGFKDGLLAGLSIGAGARYVGESEGSDLNDFQVPSYTL
                     FDASVSYDLANVGLQGTSVRVNANNLTDEYYVASCYSATACYLGEERTVVATVTQKF"
     gene            897..>1556
                     /locus_tag="VLF16_16140"
     CDS             897..>1556
                     /locus_tag="VLF16_16140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HSX72464.1"
                     /translation="MRNILVLLHRYLGLATAIFLALAGLTGSVLAFHHELDEWLNPQF
                     YQTDHAATARMDGPSLIERLEAEHPQRLVWYMEQPDEPGHSALLATVPRTDPASGQPY
                     PLAPRVFYLDPANGQVLGEREWGACCFSKENLVPFILEFHYNLSLPGNWGIWLMGIIA
                     ILWTLDCLVSLWLTLPRGRPFWRKWGKAWKIKRQRLNHDVHRAGGLWLWLLLTPVAVS
                     SV"
BASE COUNT          282 a          535 c          482 g          257 t
ORIGIN      
        1 cgtcaggact ggtacgacgt gtccattgac gactaccagc agggcaccaa ggacgccaac
       61 accggcgaca agctcagcgg ccacctcggc gtgctctacg ccttcgaaaa tggcctgtcg
      121 ccgtacctga gctactccac ctcgttcaac cccacgtcca actactccga tggcgcgcag
      181 atcctcaagc cgaccaccgg cgagcagtgg gaggccggcc tgaaattcca gccgccgggc
      241 accgacgacc tgtacaccat ctccttcttc accatcgaga tggagaacct gttcgccaag
      301 gaaaacagtt tcaccgacag ctacgagtac aagggcgtcg gcggcatcga ctccaagggc
      361 gtggagctgg aggcccgcgt gcaggtcacc gacaacctgc aactgatggg cagctacacc
      421 tacaacgacg tggaatacag caagtcctac ttcgtcttcg acgccctcgg cggggtggaa
      481 gatgccaagg gcaacacgcc gtaccagacc cccgagcaga tggccagcct gtgggccgac
      541 tacggcttca aggacggcct gctggccggc ctgagcatcg gcgccggcgc gcgctacgtg
      601 ggcgagagcg agggcagcga cctcaacgac ttccaggtgc cgtcctacac cctgttcgat
      661 gcgtcggtca gctatgacct ggccaacgtc ggcctgcagg gcacctcggt gcgggtcaac
      721 gccaacaacc tcaccgacga gtactacgtg gcttcctgct attcggccac cgcctgctac
      781 ctgggcgagg aacgtaccgt ggtggccacc gtcacccaga agttctgatg cgctgaaacg
      841 gccgccgtct cgcgagggac ggcggccttc tgctgtttgc gagacgggaa aacatcatgc
      901 gcaacatcct ggtcctgttg caccgctatc tgggcctggc cacggcgatc ttcctcgccc
      961 tggccggcct caccggcagc gtgctggcct tccaccacga gctggacgag tggctcaacc
     1021 cgcagttcta ccagaccgac cacgccgcca cggcgcgcat ggacggcccg agcctgatcg
     1081 agcggctgga ggccgagcac ccgcagcgcc tggtctggta catggagcag cccgacgagc
     1141 ccggccattc ggcgctgctg gccaccgtgc cgcgcaccga tccggccagc ggccagcctt
     1201 atccgctggc gccgcgggtg ttctatctcg acccggccaa cggccaggtg ctgggcgagc
     1261 gggagtgggg cgcctgctgc ttttcgaaag agaacctggt gccctttatc ctcgagttcc
     1321 actacaacct cagcctgccg ggcaactggg gcatctggct gatgggcatc atcgcgattc
     1381 tctggaccct cgattgcctg gtttcgctgt ggttgaccct gccgcgtggg cggccgttct
     1441 ggcgcaagtg gggcaaggcc tggaagatca agcgccagcg cctcaaccac gacgtgcacc
     1501 gcgccggcgg cctgtggcta tggctgctgc tgacgccagt ggcggtgagc agcgtg
//
LOCUS       DATIHC010000967         1557 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_22974, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000967 DATIHC010000000
VERSION     DATIHC010000967.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1557
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22974"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1557
                     /locus_tag="VLF16_16145"
     CDS             <1..>1557
                     /locus_tag="VLF16_16145"
                     /EC_number="6.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015475369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cobaltochelatase subunit CobN"
                     /protein_id="HSX72465.1"
                     /translation="HIALPELDGRLITRPISFKGVAARSERSQSDVVRYRPHLPGMDF
                     VAELALRWTQLAAKTNADKRVALILANYPTRDGRIGNGVGLDTPAAALNILRALQQQG
                     YPVADLPGDGTTLIHQLLGGVTNDLDNLDQRPCAQSLALDDYQRWFTSLPAANQRAVT
                     ERWGPPEQDPMYRSGRLMVAGLRFGLAFVGIQPARGYQLDAAAVYHDPDLVPPHGYLA
                     FYCWLRTAFAVDALIHVGKHGNLEWLPGKSVGLSEACWPSAILGPLPNLYPFIVNDPG
                     EGAQAKRRTQAVILDHLIPPLTRAESYGPLRDLERLADEYYEASQLDPRRAVELRGEI
                     QRKAREASLDRELGLQVNDDPDSWLPQLDAYLCDLKESQIRDGLHCFGESPSGRLRRD
                     TLLSLVRIPRGDGHGQHASLLRALAQDLALDFDPLGGEPAEPWNGLRPDCLQALSDEP
                     WRSRGDTRERLELLALQLIEQPSSPAPGPASAAVLNELRAHIAPLLDSCGAAEMNGLL
                     AALQGRFVPPG"
BASE COUNT          257 a          592 c          495 g          213 t
ORIGIN      
        1 gcacatcgcc ctgcccgagc tggacggcag gctgatcacg aggccgatca gcttcaaggg
       61 cgtggccgca cgcagcgagc gcagccagag cgacgtggtg cgctatcgcc cgcacctgcc
      121 gggcatggat ttcgtcgccg agctagccct gcgctggacg caactggccg ccaagacaaa
      181 tgccgacaaa cgcgtcgccc tgatcctagc caactacccg acccgcgacg gccgcatcgg
      241 caatggcgtc ggcctggaca ccccggccgc cgcgctgaat atcctgcgcg ccctgcagca
      301 gcagggttac ccggtggcgg atctgccagg cgacggcacc acgctgatcc accaattgct
      361 cggcggcgtg accaatgatc tggacaatct cgaccagcgc ccctgcgccc agagcctggc
      421 gctggacgac taccagcgct ggttcaccag cctgcccgcg gccaaccagc gcgccgtaac
      481 cgaacgctgg ggcccaccgg agcaggaccc gatgtaccgc agcggccgac tgatggtcgc
      541 cggcctacgc ttcggcctgg ccttcgtcgg catccagccg gcgcgcggct atcagctgga
      601 cgccgctgcg gtgtaccacg acccggacct ggtgccgccg cacggctatc tggccttcta
      661 ctgctggctg cgcacggcct tcgccgtcga cgcgctgatc catgtcggca aacacggcaa
      721 tctggaatgg ctgccgggca agagcgtcgg cctgtccgag gcctgctggc caagcgcaat
      781 cctcggcccg ctacccaacc tctatccctt tatcgtcaac gaccccggcg aaggtgccca
      841 ggccaagcgc cgcacccagg cggtgatcct cgaccacctg ataccgccgc tgacccgcgc
      901 cgagagctac ggcccgctgc gcgacctgga gcgcctggcc gacgagtact acgaagccag
      961 ccagctcgat ccgcgccgcg ccgtggaact gcgcggagag atccagcgca aggcgcgcga
     1021 ggccagcctc gaccgcgagc tgggcctgca ggtcaacgac gacccggaca gctggctgcc
     1081 gcagctggac gcctacctgt gcgacctcaa ggaatcgcag atccgcgatg gtctgcactg
     1141 cttcggcgaa tcgccgagcg ggcgcctacg ccgcgacacc ctgctctcct tggtacgcat
     1201 cccgcggggc gacggccatg gccagcacgc cagcctgtta cgcgcgctgg cccaggacct
     1261 ggctctggac ttcgacccgc tcggcggcga gccggccgag ccgtggaacg gcctgcgccc
     1321 ggattgtctg caagcactca gcgatgagcc ctggcgcagc cgtggcgaca cccgcgagcg
     1381 cctggagctg cttgccctgc agctgatcga acagccctca tcgccggcgc caggccctgc
     1441 cagcgccgca gtgctgaacg aactgcgcgc ccatatcgcc ccgctgctgg acagctgcgg
     1501 cgccgccgaa atgaacggcc tgctcgcggc gctgcaaggc cgcttcgtgc cgccagg
//
LOCUS       DATIHC010000968         1549 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_25445, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000968 DATIHC010000000
VERSION     DATIHC010000968.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25445"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..838
                     /locus_tag="VLF16_16150"
     CDS             <1..838
                     /locus_tag="VLF16_16150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013714063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSX72466.1"
                     /translation="AKGALAQEQARYRQTERDLKRIRELQKKGFASESELDNAISNFE
                     QSKANIEAAKAEVQSKQIDLDYTTVEAPISGITSKETVSEGSLMVAGDPNASLLTQIT
                     QLDPIYVNFAAPDREVSNVRSGLQSGSLVREGGQRMSVEIKFGDGTSYPVEGEVDFTD
                     STIDRSTGTVSARAVVPNPDQALMPGQFVRVVVKGINKPNAITVPERALSQGPNGTFV
                     YVVDEQGMARIRPVGTGQTAGGRWVVESGIAAGDRVIVEGLPKVHPNAPVKVVDAAPA
                     KQ"
     gene            851..>1549
                     /locus_tag="VLF16_16155"
     CDS             851..>1549
                     /locus_tag="VLF16_16155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003242824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSX72467.1"
                     /translation="MISKFFIDRPIFAAVISIVIILAGLAAMRSLPIAQYPEILPPQV
                     SVTAAYPGASSQVIAETVAAPLEQEINGVEGMIYQLSNSDSNGAMSLTVYFEVGTDPD
                     QATIDVNNRVQAALAKLPEEVRRQGVKVEKKSSDILQVVTLFSPDDSRDPIFISNYAL
                     INVIDELKRIHGVGDASQFGSKDYSMRIWLRPDQLAQYNLTPSDVVRAIQEQNSQFAA
                     GNFGKEPLSSPQDFT"
BASE COUNT          299 a          533 c          494 g          223 t
ORIGIN      
        1 tgccaagggc gcgctggccc aggagcaggc gcgctatcgg cagaccgaac gcgacctcaa
       61 gcgcatccgc gagctgcaga agaagggctt cgccagcgag agcgagctgg acaacgccat
      121 ctccaacttc gaacagagca aggccaacat cgaggcggcc aaggctgaag tgcagtccaa
      181 gcagatcgac ctcgactaca ccacggtgga ggcgccgatc tccggcatca ccagcaagga
      241 gacggtctcc gagggcagcc tgatggtggc cggcgacccc aacgccagcc tgctgaccca
      301 gatcacccag ctcgatccca tctacgtcaa cttcgctgcg cccgaccgcg aggtgtccaa
      361 cgtgcgcagc ggcctgcaga gcggcagcct ggtgcgcgag ggcggccagc gcatgagcgt
      421 ggagatcaag ttcggcgacg gcaccagtta tccggtggaa ggcgaggtgg atttcaccga
      481 cagcaccatc gaccgcagca ccggcaccgt tagcgcccgc gccgtggtgc ccaacccgga
      541 ccaggcgctg atgccggggc agttcgtgcg cgtggtggtc aagggcatca acaagcccaa
      601 cgcgatcacc gtgccggagc gcgcgctgtc ccaggggccg aacggcacct tcgtctatgt
      661 ggtggacgag cagggcatgg cgcgcattcg cccggtcggc accgggcaga ccgccggtgg
      721 tcgctgggtg gtggagagcg gcatcgccgc tggcgacagg gtcatcgtcg aaggcctgcc
      781 caaggtccac cccaacgcgc cggtcaaggt ggtcgacgcc gcccctgcca agcagtaagg
      841 agccaggccc gtgatctcca agttctttat cgaccggccg atcttcgcgg ccgtcatctc
      901 catcgtcatc atcctcgccg gcctcgcggc catgcgatcg ttgcccatcg ctcagtaccc
      961 ggaaatcctg ccgccgcagg tctcggtgac ggcggcctac ccgggcgcca gctcgcaggt
     1021 catcgccgaa accgtggccg cgccgctgga gcaggagatc aacggcgtcg agggcatgat
     1081 ctaccagctg tccaattccg acagcaacgg cgccatgagc ctgaccgtgt acttcgaggt
     1141 cggcaccgac ccggaccagg cgaccatcga cgtcaacaac cgggtccagg ccgcgctggc
     1201 caagctgccc gaggaagtgc gccggcaggg cgtgaaggtg gagaagaaat cctccgacat
     1261 cctccaggtg gtcaccctgt tctcgccgga cgactcgcgc gatccgatct tcatcagcaa
     1321 ctacgcgttg atcaacgtga tcgacgagct caagcgcatc cacggcgtgg gcgatgccag
     1381 ccagttcggc tccaaggact actccatgcg catttggctg cgcccggacc agctggcgca
     1441 gtacaacctc acgccgagcg acgtggtccg cgccatccag gagcagaact cgcagttcgc
     1501 cgccggcaat ttcggcaagg agccgctgtc ttcgccgcag gacttcacc
//
LOCUS       DATIHC010000969         3078 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_39242, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000969 DATIHC010000000
VERSION     DATIHC010000969.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3078
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39242"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..681)
                     /locus_tag="VLF16_16160"
     CDS             complement(<1..681)
                     /locus_tag="VLF16_16160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003293570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSX72468.1"
                     /translation="MLIARLACLDNQAHEHAHDYHQLVMSLEGRAEFEVEGCGGEVCR
                     MRACLVPGDADHQFAGMGENRMLILDLDERDTSPEDLDLLAQLFENPRYPALDADFQN
                     LLSYAGAELARYGSDPHLARALGGVLLRALHLRLFGERRQGAVANLDLGRLDAYIVEH
                     LARRITVIELAQVACLSPSHFHAQFKDSVGLTPHQYLLKTRLDHAARLLRESPLPLVR
                     IAGECGFSS"
     gene            865..>3078
                     /gene="lon"
                     /locus_tag="VLF16_16165"
     CDS             865..>3078
                     /gene="lon"
                     /locus_tag="VLF16_16165"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003455211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HSX72469.1"
                     /translation="MSDSSEYIEAEPHRQPTSLALPSQTLPDKLYVIPIHNRPFFPAQ
                     VLPVIVNEEHWAETLELVANTEHKCLALFYVDQPIEDPRHFDTGLLPEHGTLVRVHHA
                     SRADGKLQFVAQGLGRVRVRGWLKRHRPPYLAEVDYPQSPNDGRDEVKAYGMALINAI
                     KELLPLNPLYSEELKNYLNRFNPNDPSPLTDFAAALTTAPASVLQEVLDCVPVLRRME
                     KVLPLLRKEVEVARLQNELSAEVDRKIGKHQREFFLKEQLKVIQQELGITKDDRSADA
                     DEFRARLEGKTLPAQAQKRIDEELGKLAILETGSPEYAVTRNYLDWATALPWGVFGQD
                     KLDLGHARKVLDKHHAGMDDIKARITEFLAVGTFKGEIAGSIVLLVGPPGVGKTSIGK
                     SIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAMPGTIIRALRDAESNNPVFMIDEI
                     DKMGASYQGDPASALLETLDPEQNVEFLDHYLDLRLDLSKVLFVCTANTLDSIPGPLL
                     DRMEVIRLSGYIAEEKLAIARKHLWPRQLEKAGVKKTQLSIIDAALRLVIEGYAREAG
                     VRQLEKQLGKLVRKAVVRLLDEPGQPVKIGPKDLEAYLGMKVFRGEQVFSGTGVITGL
                     AWTSMGGATLPIEATRIHTLNRGFKLTGQLGEVMKESAEIAYSYIGSHLKQFGGDASF
                     FDQAFVHLHVPEGATPKDGPSAGISMASALLSLARNQAPKKGVAMTGELTLTGQVL"
BASE COUNT          579 a         1067 c          993 g          439 t
ORIGIN      
        1 gctggagaag ccgcactccc cggcgatccg caccagcggc agcgggctct cgcgcagcag
       61 gcgcgcggcg tggtcgaggc gggtcttgag caggtattgg tgcggcgtca ggcccacgct
      121 gtccttgaac tgcgcgtgga agtggctggg gctgaggcag gccacctggg ccagctcgat
      181 caccgtgatg cgccgcgcca ggtgctcgac gatgtaggcg tccagccgtc ccaggtcgag
      241 attggccacg gcgccttggc ggcgctcgcc gaacagccgc aggtgcagcg cgcgcagcag
      301 cacgccgccg agggcccgcg ccaggtgcgg gtcgctgcca tagcgggcca gttcggcgcc
      361 ggcgtagctc agcaggttct ggaagtcggc gtcgagcgcc ggataacgcg ggttctcgaa
      421 cagctgggca agcaggtcga ggtcctccgg cgaggtgtcg cgctcgtcca gatcgaggat
      481 cagcatgcgg ttctcaccca tgccggcgaa ctggtgatcg gcatcgcccg gcaccaggca
      541 ggcgcgcatg cggcaaacct ctccaccgca gccctccacc tcgaattccg cgcgcccctc
      601 gagcgacatc accaactggt gatagtcgtg ggcgtgttca tgggcctggt tgtccaggca
      661 cgcgaggcgg gcaatgagca tggcggaaga taccgaaaga tcaggttgca ctttatccac
      721 tcgaacgaca aagagggagt gcaaccgatg ggtggacagg ttgcaccttc gccccgccgg
      781 acacaagccg gcacataacg ttgaaatgcc ctgtgccgcg ccccatctaa gctgctacca
      841 ccgtttgagc agacaagggc cgccatgagc gacagttccg aatacatcga agccgagccg
      901 catcgccaac ccaccagcct ggcgctcccc agccagaccc tgccggacaa gctctacgtc
      961 atccccatcc acaatcgccc gttcttcccg gcccaggtgc tgccggtgat cgtcaacgag
     1021 gaacactggg cggaaaccct ggaactggtg gcgaacaccg agcacaagtg cctggcgctg
     1081 ttctacgtcg accagccgat cgaggatcca cgccacttcg acaccggcct gctgcccgag
     1141 cacggcaccc tcgtgcgggt gcaccatgcc agccgcgccg acggcaagct gcagttcgtc
     1201 gcccagggcc tgggccgggt gcgcgtgcgc ggctggctca agcgccatcg cccgccctac
     1261 ctggccgagg tcgactaccc gcagagcccc aacgacgggc gcgacgaggt caaggcctac
     1321 ggcatggcgc tgatcaacgc gatcaaggag ctgctgcccc taaacccgct gtacagcgag
     1381 gagctgaaga actacctcaa ccgcttcaac cccaacgatc cgtcgccgct caccgacttc
     1441 gccgccgccc tcactaccgc gccggccagc gtgctgcagg aggtgctcga ctgcgtgccg
     1501 gtgctgcgcc ggatggaaaa ggtgctgccg ctgctgcgca aggaagtgga agtggcgcgt
     1561 ctgcagaacg aactgtccgc cgaggtggac cgcaagatcg gcaagcatca gcgcgagttc
     1621 ttcctcaagg agcagctcaa ggtgatccag caggagctgg gcatcaccaa ggacgaccgc
     1681 agcgccgacg ccgacgaatt ccgcgcccgc ctggagggca agaccctgcc ggcccaggcg
     1741 cagaaacgca tcgacgagga actgggcaag ctggccattc tcgagaccgg ctcgccggaa
     1801 tatgcggtga cccgcaacta cctggactgg gccaccgccc tgccctgggg cgtgttcggc
     1861 caggacaagc tggacctcgg ccacgcccgc aaggtgctgg acaagcacca cgccggcatg
     1921 gacgacatca aggcgcgcat caccgagttc ctcgccgtcg gcaccttcaa gggcgagatc
     1981 gccggcagca tcgtgctgct ggtcggccct cccggtgtgg gcaagaccag catcggcaag
     2041 tccatcgccg agtccctggg ccgaccgttc taccgcttca gcgtgggcgg catgcgcgac
     2101 gaggcggaga tcaagggcca ccgccgcacc tacatcggcg ccatgcccgg caccatcatc
     2161 cgcgcgctgc gcgacgccga gtcgaacaac cccgtcttca tgatcgacga gatcgacaag
     2221 atgggcgcca gctaccaggg cgacccggcc tcggcgctgc tggagaccct cgacccggaa
     2281 cagaacgtcg aattcctcga ccactatctg gacctgcgcc tggacctgtc caaggtgctg
     2341 ttcgtctgca ccgccaacac cctcgactcc attcccgggc cgctgctcga ccgtatggag
     2401 gtgatccgcc tgtccggcta catcgccgag gaaaagctgg ccatcgcccg caagcacctg
     2461 tggccgcgcc agctggaaaa ggccggggtg aagaagaccc aactcagcat catcgacgcc
     2521 gccttgcgcc tggtgatcga gggctacgcc cgcgaggccg gcgtgcgcca gctggaaaag
     2581 cagctcggca agctggtgcg caaggcggtg gtcaggctgc tcgacgaacc cggccagccg
     2641 gtgaagatcg ggcccaagga cctggaagcg tacctgggca tgaaggtgtt ccgcggcgag
     2701 caggtcttca gcggcaccgg ggtgatcacc ggcctggcct ggaccagcat gggcggcgcc
     2761 accctgccca tcgaggccac gcgtatccac acgctcaacc gcggcttcaa gctcaccggc
     2821 cagctcggcg aggtgatgaa ggagtcggcg gagatcgcct acagctacat cggctcgcat
     2881 ctgaagcagt ttggcggcga tgccagcttc ttcgaccagg ccttcgtcca cctgcacgta
     2941 ccggaaggcg ccacacccaa ggacggcccc agcgccggta tcagcatggc cagcgccctg
     3001 ctctctctgg cgcgcaacca ggcgccgaag aaaggcgtgg ccatgaccgg cgagctgacg
     3061 ctgacgggcc aggtgctg
//
LOCUS       DATIHC010000970         4039 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18452, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000970 DATIHC010000000
VERSION     DATIHC010000970.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4039)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4039)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4039
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18452"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..297
                     /gene="metG"
                     /locus_tag="VLF16_16170"
     CDS             <1..297
                     /gene="metG"
                     /locus_tag="VLF16_16170"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase subunit beta"
                     /protein_id="HSX72470.1"
                     /translation="DLRIALIEKCEFVEGADKLLRLSLDIGDEKRNVFSGIKSAYPDP
                     SKLEGRLTLYVANLAPRKMKFGISEGMVLAAGPGGEEIYLLSPDSGAKPGQRVK"
     gene            350..898
                     /locus_tag="VLF16_16175"
     CDS             350..898
                     /locus_tag="VLF16_16175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017844634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rnf-Nqr domain containing protein"
                     /protein_id="HSX72471.1"
                     /translation="MSDFLFALIGAALVSNLILGLPLAADALRSARVQALGPAGALLI
                     LLAAPSAWLLQQALQAVDLTYLHLLIGLPLLAALSWLSLALLARLRPALPLDGLWPLL
                     LGNGLGAMLLARSLENFSATLALAIGGGLGFWLVLQLMSDLLERIEQCDVPASFRGTP
                     ILLIAAGLMSLAFLGFSGMGAA"
     gene            904..2031
                     /locus_tag="VLF16_16180"
     CDS             904..2031
                     /locus_tag="VLF16_16180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008079388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RnfABCDGE type electron transport complex
                     subunit B"
                     /protein_id="HSX72472.1"
                     /translation="MISIQAIDALLPQTQCGKCGHPGCKPYAEGIANGEAINKCPPGG
                     TATIHALARLLQVPELPLELPEVPPQIALIREAECIGCTKCIQACPVDAIVGAAKLMH
                     TVITAECTGCELCVAPCPVDCIDILPLAGREADQQRERADQFRSRHEAHLARLARDEA
                     RRKAERAARTPAVSAATPTAQPAASNDDSYKRLKIEAAMAKVVLAKAEKQLAQRGNAE
                     LQRQVDELRQAAERAQQALEQATPPAPAVPTAGIAALKQAKIQFALRRAELDKATRQG
                     AEDATLQALRAHLEAAAQALHAAEEASGKPLPDLVRTDKHPVDLELRELKTEHAYARA
                     ELQRLERRLSANPEAAPADALQQARQRLANAERQLHDYQQP"
     gene            2012..3016
                     /locus_tag="VLF16_16185"
     CDS             2012..3016
                     /locus_tag="VLF16_16185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016491509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RnfABCDGE type electron transport complex
                     subunit D"
                     /protein_id="HSX72473.1"
                     /translation="MTTSSPEIAFDPRPSLQRVLLACLPGALVLLWFNGWGLLIQLLL
                     AIVTCCACDLLTRRLRGQPLTPKQHSLLEQPLLAEGSGLVSALLLALALPGYAPWWLT
                     VASAAFASLFGKSLFGGFGSNPFNPAMLGYAFALVAFPAQMVHWPAPGGGHDLLAGLQ
                     QIFGFGPGLPDGWSQATVLDSLRHNDRLTVDELFASHPAFGGVGGRGVEWVNLAFLAG
                     GLLLLQQKVIRWQAPVGMLGALFVASLLCWNGLGSDSNGSPLLHLFSGATMLGAFFIV
                     TEPVSGPDSARGRLYFGIGVGLLIYVIRTWGGYPDGLAFAVLLMNLCVTRLDRLGAPR
                     "
     gene            3013..3603
                     /locus_tag="VLF16_16190"
     CDS             3013..3603
                     /locus_tag="VLF16_16190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003452639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RnfABCDGE type electron transport complex
                     subunit G"
                     /protein_id="HSX72474.1"
                     /translation="MKRAAPLLLLIVLLGAGLLAILQHVAAPRIEQQRQAAAERTLLD
                     LLPAGSYDNRPLRSPIALPTGGLLGNASAEPGYLASLNGRPSAVLLPVSARGYEGPIR
                     LLVAISADGRLLASKVLQQQETPGLADLLAPERARWLVGFSDKTLEANWTLRADGGQV
                     DQIAGATVTSRAVTDALQRALRFFDAERERLLEAQP"
     gene            3600..>4039
                     /locus_tag="VLF16_16195"
     CDS             3600..>4039
                     /locus_tag="VLF16_16195"
                     /inference="COORDINATES: protein motif:HMM:NF014557.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rnf-Nqr domain containing protein"
                     /protein_id="HSX72475.1"
                     /translation="MKRPMQLLALAPLLGCTDLLIKALGIGLCGLLVLLLCGLLLTPL
                     RTRLHGNALVLAVLLIGGILASAAALALQLLSAELAGALELFLPLLILPCLALALGNQ
                     HTALAGLRPGLTFALVATLLGGLREPLGRGSLFAHADWLLGPAA"
BASE COUNT          574 a         1513 c         1331 g          621 t
ORIGIN      
        1 gacctgcgca tcgccctgat cgagaagtgc gagttcgtcg agggcgccga caagctgctg
       61 cgcctgtcgc tggatatcgg cgacgagaag cgcaatgtgt tctccggcat caagtccgcc
      121 tacccggacc cgagcaagct ggaaggccgc ctgaccctgt acgtggccaa cctggccccg
      181 cgcaagatga agttcggcat cagcgaaggc atggtcctgg ccgccggccc gggcggcgag
      241 gaaatctacc tgctcagccc ggacagtggc gccaagccag gccagcgcgt caagtaaggc
      301 tggccttgtc acaggcgccg ttccggcggc gggcctggag cagatacgca tgagcgactt
      361 cctcttcgcc ctgatcggcg ccgcgctggt cagcaacctg atcctcggcc tgccgctcgc
      421 tgccgacgcc ctgcgcagcg cccgtgtaca ggcgctggga ccggccggcg ccttgctgat
      481 cctgctcgcc gcacccagcg cctggctgct gcaacaggct ctgcaggctg tcgacctgac
      541 ttatctccac ttgctgatcg gcctgccgct gctggccgcc ctgagctggc tcagcctggc
      601 tctgctggca cgtctgcgcc ctgccctgcc cctggacggc ttgtggccgc tgctgctcgg
      661 caatggcctc ggcgccatgc tgctggcgcg ttcgctggag aatttctccg ccacgctggc
      721 ccttgctatc ggcggcggcc tgggcttttg gctggtactg caactgatga gcgacctgct
      781 cgagcgcatc gagcagtgcg atgtacccgc atcctttcgc ggcacgccga tcctgctgat
      841 cgcggccggc ctgatgagcc tggccttcct cggtttcagc ggcatggggg cggcatgagc
      901 gcgctgatca gcatccaggc catcgacgcc ctgctgccgc agacccagtg cggcaagtgc
      961 ggccatcccg gctgcaagcc ctacgccgag ggcatcgcca atggcgaggc gatcaacaag
     1021 tgcccgccgg gcggcaccgc caccatccat gccctggccc ggctgctgca ggtgccggaa
     1081 ctgccgctgg agctgccgga ggtgccgccg cagatcgcgc tgatccgcga ggccgaatgc
     1141 atcggctgca ccaagtgcat ccaggcctgc ccggtggacg ccatcgtcgg cgcggccaag
     1201 ctgatgcaca cggtgatcac cgcagaatgc accggctgcg agctgtgcgt ggcgccctgc
     1261 ccggtcgact gcatcgacat cctgccgctg gcaggcagag aggccgatca acagcgcgaa
     1321 cgcgccgacc agttccgcag ccgtcatgag gcgcaccttg cccgcctggc gcgggacgag
     1381 gcccggcgca aggccgagcg cgccgcccgt acgccggcgg tgagcgcggc cacgccgaca
     1441 gcgcaaccgg ccgcgagcaa cgacgacagc tacaagcgcc tgaagatcga ggcggccatg
     1501 gccaaggtgg tgctggccaa ggccgagaag cagctggccc agcgcggcaa tgccgagttg
     1561 cagcgccagg tggacgaact gcgtcaggct gccgagcgcg cccagcaggc cctcgaacag
     1621 gccacaccgc cagcgccagc ggttcccacc gccggcatcg ccgcgctcaa gcaggccaag
     1681 atccagttcg ccctgcgccg tgccgagctg gacaaggcca cgcgccaggg cgcggaagac
     1741 gccacgttgc aggccctgcg cgcccatctg gaggccgccg cccaggccct gcatgccgcc
     1801 gaagaggcca gcggcaagcc actgcccgat ctggtgcgca ccgataaaca tccggtagac
     1861 ctcgagctgc gcgagctgaa gaccgaacac gcctacgccc gcgccgagct gcagcgcctg
     1921 gagcggcgcc tttcggccaa ccccgaggcg gcacccgcgg atgcgctgca gcaggcccgc
     1981 cagcgcctgg caaatgccga gcgacagctg catgactacc agcagccctg agatcgcctt
     2041 cgacccacgc ccgagcctgc agcgggtgct gctcgcctgc ctgcccggcg ccctggtcct
     2101 gctctggttc aacggctggg gcctgctgat ccagttgctg ctggccatcg tcacctgctg
     2161 cgcctgcgac ctgctgaccc gccgcctgcg cggccagccg ctcacgccga aacagcacag
     2221 cctgctcgag caaccgctac tggccgaagg cagtggcctg gtcagcgccc tgctgctggc
     2281 cctggccctg cccggctacg cgccctggtg gctgaccgtg gccagcgccg ccttcgccag
     2341 cctgttcggc aaatcgctgt tcggcggatt cggcagcaac ccgttcaacc cagccatgct
     2401 cggctacgcc ttcgccctgg tcgccttccc ggcgcagatg gtgcactggc cagctcctgg
     2461 tggcggccac gacctgctcg ccgggctgca gcagatattc ggcttcggcc ccggcctgcc
     2521 ggacggctgg agccaggcta cggtgctgga cagcctgcgc cacaacgacc gcctgaccgt
     2581 cgacgaactg ttcgccagcc acccggcctt cggcggtgtc ggcggacgcg gagtggaatg
     2641 ggtcaacctg gccttcctcg ccggcggcct gctgctcctg cagcagaagg tgatccgttg
     2701 gcaggcgccg gtcggcatgc tcggcgcctt gttcgtcgcc agcctgctgt gctggaacgg
     2761 cttgggctcg gactccaacg gctcgccgct gctgcacctg ttcagcggcg ccaccatgct
     2821 cggcgccttc ttcatcgtca ccgaaccggt cagcggcccg gacagtgcgc gcgggcgcct
     2881 gtacttcggc attggcgtcg gcctgctgat ctacgtgatc cgcacctggg gcggctaccc
     2941 ggacggcctg gccttcgccg tgctgctgat gaacctctgc gtcacccgcc tggatcgcct
     3001 gggagcgcca cgatgaaacg cgccgccccg ctcctgctgc tgatcgtgct gctcggcgcc
     3061 ggcctgctcg ccatcctcca gcacgtcgcc gcgccgcgca tcgagcaaca gcgccaggcc
     3121 gccgccgaac gcaccctgct cgacctgctg cccgccggca gctacgacaa ccggccgcta
     3181 cgcagtccta tcgcgctgcc cacaggcggc ctgctgggca atgccagcgc cgaaccgggc
     3241 tacctggcca gcctgaatgg tcggcccagc gccgtgctgc tgccggtcag cgcccgtggc
     3301 tacgagggac cgatccgcct gctggtggcg atcagcgcag atggccgcct gctcgccagc
     3361 aaggtgctgc aacagcagga gacaccaggc ctggccgatc tgctggcgcc agagagggcc
     3421 cgctggctgg tcggcttctc cgacaagaca ctggaggcca actggacgct gcgcgcagac
     3481 ggcggccagg tcgaccagat cgctggcgcc accgtcacct cgcgcgcggt gaccgatgcc
     3541 ctgcagcgcg ccctgcgctt cttcgatgcc gagcgcgagc gactgctgga ggcgcagcca
     3601 tgaagcgccc gatgcaactg ctcgccctgg cgcctctgct gggctgcacc gatctgctga
     3661 tcaaggcgct cggcatcggc ctgtgcggcc tgctggttct gctgctgtgc ggcctgctgc
     3721 tgacgccgct gcgcacccgg ctgcacggca acgccctggt actggccgtc ctgctgatcg
     3781 gcggcatcct cgccagtgcc gcggcgttgg ccttgcagct gctcagcgcc gagctggccg
     3841 gcgccctgga gctgttcctg ccgctgctga tcctgccctg tctggcgctg gccctgggca
     3901 atcagcacac ggcactggcc ggcctccggc ccggactgac cttcgcgctg gtcgccacgc
     3961 tgctcggcgg cctgcgcgag ccgctcggcc gtggcagcct gttcgcccat gccgactggc
     4021 tgctggggcc cgccgccag
//
LOCUS       DATIHC010000971         1740 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_39268, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000971 DATIHC010000000
VERSION     DATIHC010000971.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1740)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1740)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1740
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39268"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..678)
                     /locus_tag="VLF16_16200"
     CDS             complement(<1..678)
                     /locus_tag="VLF16_16200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003194630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HSX72476.1"
                     /translation="MDKILIRGARTHNLKNVDLTLPRDKLIVITGLSGSGKSSLAFDT
                     LYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTIT
                     EIYDYLRLLYARVGIPYSPATGLPIESQTVSQMVDRTLDLPEGTRLYLLAPIARGRKG
                     EFKKELADLMRKGFQRVKIDGEYHEIEDAPALDKKFKHDIEVVVDRLVVSREISGRLA
                     ESFETALK"
     gene            871..>1740
                     /locus_tag="VLF16_16205"
     CDS             871..>1740
                     /locus_tag="VLF16_16205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017849543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSX72477.1"
                     /translation="MHDPHSDRMSAGETRAAASLALVFAFRMLGMFMVLPVLATYGTD
                     LAGATPALIGLAIGAYGLTQAALQIPFGVISDRIGRLPVIYFGLLVFAAGAALAANAD
                     SIWGVIAGRVLQGAGAISAAVMALLSDLTREQHRTKAMAMIGMSIGLSFAVAMVVGPL
                     LTRAFGLSGLFWATAGMALLGMLIVAVAVPRASRSLQHRESGVARQALLPTLRNGELL
                     RLNLGIGVLHAILMASFVALPLALVDEGGLAKEEHWWVYLSALLIGFFGMVPFIIYGE
                     KKRRMKRVLCGAVL"
BASE COUNT          252 a          560 c          607 g          321 t
ORIGIN      
        1 cttgagcgcg gtctcgaagc tctcggcaag gcgtccggaa atttccctgc tgacgacaag
       61 gcggtccacc acgacctcga tgtcgtgctt gaacttcttg tcgagcgccg gggcatcctc
      121 gatctcgtga tactcgccgt cgatcttgac gcgctggaag cccttgcgca tcaggtcggc
      181 cagttccttc ttgaactcgc ctttgcggcc gcgtgcgatg ggggcgagga ggtagaggcg
      241 ggtgccttcg ggcaggtcga gcgtgcggtc gaccatctgg ctgacagtct ggctctcgat
      301 gggcaggccc gtggcgggcg aatagggaat gccgacgcga gcatagagca ggcgcaggta
      361 gtcgtagatt tcggtgatgg tgccgacggt cgagcgcggg ttgtgcgagg tcgacttctg
      421 ctcgatggag atggccgggg agaggccctc gatggtgtcg acgtcgggct tctccatcat
      481 cgacaggaac tgccgggcgt aggccgacag ggactcgacg tagcggcgct gaccctcggc
      541 gtagagcgtg tcgaaggcca gcgacgactt gccggagccg gacaggccgg tgatcacgat
      601 cagcttgtcg cgcggcaggg tcaggtcgac gtttttcagg ttatgggtgc gggcaccccg
      661 gatcagaatc ttatccacga acggcctcgc aggtggcggg cggaaacggc gaagtatacg
      721 gctgcgggcc ggcacgcggc aaagtaccgc tggggcgcgc gccggcccct cgacacaggg
      781 gcgttgcgac cgcctcgata cgacgaggaa tggtcaacag tccctgccat gactgataga
      841 atcgccggcc tctttgttca gggtttttcc atgcacgatc cgcacagcga ccgcatgagc
      901 gccggcgaaa cccgcgccgc agccagcctg gccctggtct tcgcctttcg catgctgggc
      961 atgttcatgg tcctgccggt gctggccacc tacggcaccg acctggccgg cgccaccccg
     1021 gcgctgatcg gcctggccat cggcgcctac ggcctgaccc aggcagcgct gcagattccc
     1081 ttcggcgtga tctccgaccg catcggccgc ctgccggtga tctacttcgg cctgctggtg
     1141 ttcgccgccg gcgccgcgct ggcggccaat gccgactcca tctggggtgt gatcgccggg
     1201 cgcgtgctgc agggcgccgg ggcgatctcg gcggcggtga tggcgctgct gtcggacctg
     1261 acccgcgagc agcaccgcac caaggccatg gccatgatcg gcatgagcat cggcctgtcg
     1321 tttgccgtgg ccatggtggt cggcccgctg ctgacccgcg ccttcggcct ttccggtctg
     1381 ttctgggcca ccgccggcat ggcactgctc ggcatgctga tcgtcgccgt cgcggtgccc
     1441 cgggcctcac gctcgctgca gcaccgcgag tccggagtgg cgcgccaggc gctgctgccg
     1501 accctgcgca acggcgagct gctgcgcctg aacctgggca tcggcgtgct gcacgccatc
     1561 ctcatggcca gcttcgtcgc cctgccgctg gcactggtgg acgaaggcgg gctggccaag
     1621 gaagaacact ggtgggtcta cctcagcgcg ctgctgatcg gcttcttcgg catggttcct
     1681 ttcatcattt acggcgagaa gaagcgccgc atgaagcgcg tgctgtgcgg cgcggtgctg
//
LOCUS       DATIHC010000972         4208 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18465, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000972 DATIHC010000000
VERSION     DATIHC010000972.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4208
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18465"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..268)
                     /locus_tag="VLF16_16210"
     CDS             complement(<1..268)
                     /locus_tag="VLF16_16210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003246494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00366 family protein"
                     /protein_id="HSX72478.1"
                     /translation="MFARITHWSVQLVQRYLPSPFVFSALLTLFVLLLAMFSTQQGLP
                     TMVRHWHTGFWALLAFAMQMALVFVTGHALASAPPLRRLLDRLAA"
     gene            complement(302..1072)
                     /locus_tag="VLF16_16215"
     CDS             complement(302..1072)
                     /locus_tag="VLF16_16215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyrate dehydrogenase"
                     /protein_id="HSX72479.1"
                     /translation="MNLQGKTALVTGSTSGIGLGIALKLAEAGANLMLNGFGDSAAAL
                     AAVRAHGGKVAHHPADMSKPEEIEALIRATEAEFGGIDILVNNAGIQHVAPVEEFPVE
                     RWDAIIAINLSSAFHTTRLALPGMRQRDWGRIINIASAHGLAASAGKSAYVAAKHGLV
                     GLTKSVALETATTGVTCNAICPGWVLTPLVQKQIDDRAAAAGGLDQARHDLLAEKQPS
                     LDFVTPEQLGELALFLCSDAAIQVRGAAWNMDGGWLAR"
     gene            complement(1083..2474)
                     /locus_tag="VLF16_16220"
     CDS             complement(1083..2474)
                     /locus_tag="VLF16_16220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HSX72480.1"
                     /translation="MSVIIALAALALLMLAAYRGYSVILFAPIAALGAVLLTDPSAVA
                     PAFTGVFMEKMVGFIKLYFPVFLLGAVFGKLIELSGFSRSIVAAAIRLLGTGQAMLVI
                     VLVCALLTYGGVSLFVVVFAVYPFAAEMFRQSDIPKRLIPATIALGAFSFTMDALPGT
                     PQIQNIIPTTFFGTTSWAAPWLGVIGTLFVFSIGMLYLRRQLTKAKRNGEGYGTELRN
                     EPETAEDIALPNPWLALAPLVLVGVANLLFTHWIPALYGKTHSLQLAGMAQPVTSEVA
                     KLTGIWAVQAALLLGILFVLVCGFRAIKAKLAEGTKTAVGGALLASMNTASEYGFGAV
                     IASLPGFLVLADALKNIPNPLVNEAVTVTLLAGITGSASGGMSIALAAMSDTFIAAAN
                     AANIPLEVLHRVASMASGGMDTLPHNGAVITLLAVTGLTHREAYKDIFGITLIKTLAV
                     FFVIGVFYATGIV"
     gene            complement(2720..4135)
                     /locus_tag="VLF16_16225"
     CDS             complement(2720..4135)
                     /locus_tag="VLF16_16225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016493403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HSX72481.1"
                     /translation="MKDASTLRDYQHVRLLAIRSLFEIVEQSSEGTVIVDKDARIVWM
                     NERYARRYGLDAAAQAIGQEVEKVIPTSLLRQVVETGQPILLDMLDTPGGPLVVMRLP
                     IHDDAGVVIGAIGFALFDQLKNLAPLVTRFMQIQEELASTRSLLQARQAKYSFAHFIG
                     ASAASLEVKRRARRGAASESPVLLLGETGTGKELLAHAIHSASPRAHKPFVSVNCAAI
                     PETLLEAEFFGTAPGAFTGADRKGRPGKLQIAQGGTLFLDEIGDMPLALQSKLLRVLQ
                     EKEYEPVGSNEVRRSDVRLVAATSLDLETAVQEGRFRADLYYRLNVLPIQLPPLRERL
                     DDLPALCEAILDELPGHHELDGDGLALLASHAWPGNVRELRNVLERAALLGDEPRLNA
                     EALRAAIGRVIPPPAPRPNAVEPGAPLATDFYAAREAYERELIRQALAEHTGNVPEAA
                     KRLGLGRSTLYKKMLALGLAS"
BASE COUNT          683 a         1315 c         1541 g          669 t
ORIGIN      
        1 tcgccgccag ccggtcgagc aggcggcgca gcggcggggc gctggccagt gcgtggccgg
       61 tgacgaagac cagcgccatt tgcatggcga aggccagcag cgcccagaag ccggtgtgcc
      121 agtggcgcac catggtcggc aggccctgct gggtgctgaa catggccagc agcaggacga
      181 acaaagtgag cagtgcggag aacacgaagg gcgacggcag gtagcgctgg accagctgca
      241 cgctccagtg ggtgatgcga gcaaacatga gcaaacctct tttgttgttg ttcaatgagg
      301 tctagcgggc cagccagccg ccgtccatgt tccaggcggc gccacgcacc tggatggcgg
      361 cgtcgctgca gagaaacagg gccagttcgc cgagctgttc gggggtgacg aagtccagcg
      421 acggctgctt ctcggccagc agatcgtggc gcgcctggtc gaggccgccg gccgcggcgg
      481 cgcggtcgtc gatctgcttc tgcaccagcg gggtcagcac ccagccgggg cagatggcgt
      541 tgcaggtgac gcccgtggtg gcggtttcca gcgccacgct cttggtcagg ccgaccaggc
      601 cgtgcttggc tgccacgtag gcgctcttgc cggccgaagc cgccaggccg tgggccgagg
      661 cgatgttgat gatccgcccc cagtcgcgct ggcgcatgcc cggcagcgcc aggcgcgtgg
      721 tgtgaaaggc ggagctgagg ttgatggcga tgatcgcgtc ccagcgctcg accgggaatt
      781 cctccaccgg cgccacgtgc tggatgccgg cgttgttgac caggatgtcg atgccgccga
      841 actcggcctc ggtggcgcgg atcagcgcct cgatctcctc cggcttgctc atgtccgccg
      901 ggtggtgggc gaccttgccg ccgtgggcgc ggaccgcggc cagggcggcc gcgctgtcgc
      961 cgaagccgtt gagcatcagg ttggcgccgg cctcggccag cttgagggcg atgcccaggc
     1021 cgatgccgct ggtggaaccg gtgaccaggg cggtcttgcc ttgcaggttc ataacagtct
     1081 cctcagacga tgccggtggc gtagaacacg ccgatcacga agaacaccgc cagggtcttg
     1141 atcagggtga tgccgaagat gtccttgtag gcctcgcggt gggtcaggcc ggtgaccgcc
     1201 agcagggtaa tcaccgcgcc gttgtgcggc agggtatcca tgccgccgga ggccatcgag
     1261 gccacccggt gcagcacttc cagcgggatg ttggcggcat tggcggcggc gatgaaggtg
     1321 tcggacatgg ccgccagggc gatgctcatg ccgcccgagg ccgagccggt gatgccggcc
     1381 agcagggtga cggtgaccgc ctcgttgacc agcgggttgg ggatgttctt gagcgcatcg
     1441 gccagcacca ggaagccagg cagcgaggcg atcaccgcgc cgaagccgta ttccgaggcg
     1501 gtgttcatcg acgccagcag cgcgccgccg accgcggtct tggtgccttc ggccagcttg
     1561 gccttgatcg cgcggaagcc gcacaccagc acgaacagga tgcccagcag caaggccgcc
     1621 tgcaccgccc aaatgccggt cagcttggcc acctcgctgg tcaccggctg cgccatgccg
     1681 gccagctgca ggctgtgggt cttgccgtag agcgcgggaa tccagtgggt gaacagcagg
     1741 ttggccacgc ccaccagcac cagcggcgcc agtgccagcc aggggttggg cagggcgatg
     1801 tcctcggcgg tctccggctc gttgcgcagc tcggtgccgt agccctcgcc attgcgcttg
     1861 gccttcgtca gctggcggcg caggtagagc atgccgatgc tgaacacgaa cagagtgccg
     1921 atcacgccca gccacggcgc cgcccaggag gtggtgccga agaaggtggt ggggatgatg
     1981 ttctggatct gcggggtgcc gggcagggcg tccatggtga agctgaacgc gccgagggcg
     2041 atggtggccg ggatcaggcg cttagggatg tcgctctggc ggaacatctc ggcggcgaac
     2101 gggtacacgg cgaacaccac cacgaacagc gacacgccgc cataggtgag cagggcgcac
     2161 accagcacga tcaccagcat ggcctgcccg gtgccgagca ggcggatggc ggcggcgacg
     2221 atggaacgcg agaagccgga cagctcgatc agcttgccga acacggcgcc gagcaggaac
     2281 accgggaagt acagcttgat gaagccgacc atcttctcca tgaacacgcc ggtgaaggcg
     2341 ggcgccacgg cggacgggtc ggtgagcagc acggcgccga gggcggcgat gggggcgaag
     2401 aggatgacgc tgtagccgcg gtaggcggcg agcatcagca aggcgagtgc cgcgagggcg
     2461 atgatcacgc tcatggagct atctcctggc gccgcgtcga ggcgcggcat tcattgttgt
     2521 tgtcggcgac cggagagggc gcgtggcagg agatagcgac ttccgtgcca gatggctaac
     2581 taattgaaat aaaaggatta attcgtttgc ttggtgtgtg gctcagtcgc ttttgtctca
     2641 atatggagac acgctcggaa cggagatcgg aaatacgcgg gctgggtttc tgtctctatt
     2701 tggagatctc gtctccattt caggacgcca gtcccagcgc gagcatcttc ttgtacaggg
     2761 tcgagcgacc cagccccagg cgtttcgcgg cctccggcac gttgccggtg tgctcggcca
     2821 gggcctggcg gatcagctcg cgttcgtagg cctcgcgggc ggcgtagaaa tcggtggcga
     2881 gcggtgcgcc gggttcgacg gcgttcgggc gcggcgcggg cggcggtatg acacggccga
     2941 tcgccgcgcg cagcgcctcg gcgttcagcc gcggctcgtc gccgagcagg gccgcgcgct
     3001 ccagcacatt gcgcagctcg cgaacattgc ccggccaggc atggctggcc agcagggcca
     3061 ggccatcacc gtccagttca tggtgaccgg gcagctcgtc gaggatcgcc tcgcacaggg
     3121 ccggcagatc gtccaggcgc tcgcgcagcg gcggcagctg gatcggcagc acattgaggc
     3181 ggtagtacag gtctgcgcgg aagcgtccct cctgcacggc ggtttccagg tccagcgagg
     3241 tggcggcgac caggcgcacg tcgctgcggc gtacctcgtt ggagcccacc ggctcgtatt
     3301 ccttctcctg caacacgcgc agcagcttgc tctgcagggc caatggcatg tcgccgatct
     3361 cgtcgaggaa cagcgtgcca ccctgggcga tctgcagctt gccggggcgg cccttgcggt
     3421 cggcaccggt gaaggcgccg ggcgcggtgc cgaagaactc ggcctccagc agggtctccg
     3481 gaatcgccgc gcagttgacg ctgacgaagg gcttgtgtgc ccgcggcgag gcgctgtgga
     3541 tggcatgggc cagcagttcc ttgccggtgc cggtctcgcc gagcagcagc accggcgact
     3601 cgctggcggc gccgcgccgg gcccggcgct tgacctccag gctggcggcg ctggcgccga
     3661 tgaagtgggc gaagctgtac ttggcctggc gtgcttgcag cagcgagcgg gtcgaggcca
     3721 gctcctcctg gatctgcatg aagcgggtca ccaggggtgc caggttcttc aactgatcga
     3781 acagggcgaa accgatggcg ccgatcacca cgccggcgtc gtcgtggatc ggcaggcgca
     3841 tcaccaccag cgggccgccg ggggtgtcga gcatatccag caggatcggc tggccggtct
     3901 ccaccacctg gcgcagcagg ctggtgggga tgaccttctc cacttcctgg ccgatggcct
     3961 gggcggcggc gtccaggcca tagcggcggg cgtagcgctc gttcatccag acgatgcgcg
     4021 cgtccttgtc gacgatcacc gtgccctcgc tggactgctc gacaatctcg aacagcgagc
     4081 ggatcgccag caggcgcacg tgctggtagt cgcgcagggt ggaggcgtct ttcatcggca
     4141 gtctcgctgg agggaagaga ccgagcttag cggggctcgg ccaccgggca atctgacctt
     4201 ggtcgcag
//
LOCUS       DATIHC010000973         2130 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_46430, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000973 DATIHC010000000
VERSION     DATIHC010000973.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2130
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46430"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1170)
                     /locus_tag="VLF16_16230"
     CDS             complement(<1..1170)
                     /locus_tag="VLF16_16230"
                     /inference="COORDINATES: protein motif:HMM:NF017076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHASE2 domain-containing protein"
                     /protein_id="HSX72482.1"
                     /translation="MQQAPQSSRAFRASLWLAFGLVAVLLPLLHLWAPAQRWSNAHGD
                     WLIRQRAALQTPDPRIVVVDIDDTSLQVLVGEAGKWPWPRSMHAELLEHLLAQQAEAV
                     VFDVLFSEADRFHPDADAYFGEVLAASDRVYLAALQQQASDPAKAPLLAAYPPTTGLL
                     PGRDAQQRGVLLLPWAVAPEHWKTGTINFTQDADGVGRRYDIHRRFGDWRMPSLPARV
                     AQDRGVALPAVDSFLLDWRSAERMPYPRISFAAALAQARGEAGQLPADYFAGKIVVIG
                     TTAAGLYDLRRTPLDDLYPAVFILAAAIDNLLNGQQLHAAPAWGMALLGIALLLGLHL
                     LLLRERLLVAGLLTLGASGALLLGSYLLVLQGVLVSVLPGLLALWLLLALALAVFY"
     gene            1605..>2130
                     /locus_tag="VLF16_16235"
     CDS             1605..>2130
                     /locus_tag="VLF16_16235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSX72483.1"
                     /translation="MAEATPALEIRNLHKSYGDLEVLKGISLTARDGDVISILGSSGS
                     GKSTFLRCINLLENPHQGQILVAGEELKLKAAKNGELVAADNKQINRLRSEIGFVFQN
                     FNLWPHMTILDNIIEAPRRVLGQSRAEATEVAEALLAKVGIADKRHAYPNQLSGGQQQ
                     RAAIARTLAMQPKVI"
BASE COUNT          383 a          749 c          711 g          287 t
ORIGIN      
        1 gtagaacacc gccagtgcca gcgccagcag cagccagagc gccaacaggc cgggcagtac
       61 cgataccagc acgccctgca acaccaatag ataggagccc agcaacagcg ccccgctggc
      121 gcccagggtc agcagtcccg cgaccagcag gcgctcgcgt aataaaagga ggtgcaggcc
      181 gagcagcaga gcgatgccca gcagcgccat gccccaggct ggcgctgcat gcagctgctg
      241 gccattgagc aggttgtcga tggcggcggc gagaatgaac accgccggat agaggtcgtc
      301 cagcggcgtg cggcgcaggt cgtagagacc ggcggcggtg gtgccgatca ccacgatctt
      361 gccggcgaag taatcggccg gcagctggcc cgcctcgcca cgcgcctggg ccagggcggc
      421 cgcgaaagag atgcgtggat agggcatgcg ctcggcgctg cgccaatcga gcaggaagct
      481 gtcgacggcc ggcagcgcca caccgcggtc ctgcgccacc cgcgccggca gcgagggcat
      541 gcgccagtca ccgaagcgac gatggatgtc gtagcgccgg ccgacgccgt cggcgtcctg
      601 ggtgaagttg atggtgccgg tcttccagtg ctccggcgcg acggcccagg gcagcagcaa
      661 cacgccgcgc tgctgcgcgt cgcggcccgg gagcaggccg gtggtcggcg ggtaggccgc
      721 gagcagcggc gccttggccg gatcgctggc ctgctgctgc agcgcggcca ggtaaacccg
      781 gtcgctcgcg gccagcactt cgccgaaata ggcgtcggca tcgggatgga agcggtcggc
      841 ctcgctgaac agcacgtcga acaccaccgc ctcggcctgc tgcgccagca ggtgttcgag
      901 gagttcggca tgcatcgagc gcggccaggg ccacttgccg gcctcgccga ccaggacttg
      961 caggctggtg tcgtcgatgt cgaccacgac gatgcgcggg tcgggtgtct gcagcgcggc
     1021 gcgctggcgg atcagccagt cgccatgggc attgctccag cgctgggcgg gcgcccacag
     1081 atggagcagc ggcagcagaa cggcgaccag gccgaaggcc agccacaggc tggcacgaaa
     1141 ggccctggat gactgcggcg cctgctgcat gggtgctccc tggagattgg ttccgctcga
     1201 cccgatcccc tggggagctg cgccgactct agcaagaacc tccgtatcct ggccattggc
     1261 catcgacggc gcgcttcacc tcgccgcacc actccagtac actgcgcgcc ccgcgccggc
     1321 cggcccgaca tgccgacacc gccgaagcgc gatcgggcgc atcggaccgc tgtctccacc
     1381 caccccgacg gcgcccttcg gacggtcacg cgcgatatcg gcgatcgctt ccggcatttt
     1441 tgtttgagcg cgacacgcaa ctgtcatgat gcgacaacag gccgcggccg ggctgcgccg
     1501 cgcccgtacc cggcttggcg ctccgttgac gctatgctag gttcagccgc acgccaggaa
     1561 ggcgaccagc agccggagcg catccgcaac caagaggacc ccccatggcc gaggcaacgc
     1621 ccgcgctgga aatccgcaac ctgcataaaa gctacggcga cctcgaagtg ctcaagggca
     1681 tttcgctgac cgctcgcgac ggcgacgtga tctccatcct cggttcctcc ggctccggca
     1741 agtcgacttt cctgcgctgc atcaacctgc tcgagaaccc gcaccagggc cagatcctgg
     1801 tggccggcga agaactcaag ctgaaggcgg cgaagaacgg cgagctggtg gccgccgaca
     1861 acaagcagat caatcgcctg cgcagcgaga tcggcttcgt gttccagaat ttcaatctgt
     1921 ggccgcacat gaccatcctc gacaacatca tcgaggctcc ccgtcgcgtg ctcggccaga
     1981 gccgtgccga agccaccgag gtggccgagg cgctgctggc caaggtcggc atcgccgaca
     2041 agcgccatgc ctacccgaat cagctctccg gcggccagca gcagcgcgcc gccatcgccc
     2101 gcaccctggc catgcagccc aaggtgatcc
//
LOCUS       DATIHC010000974         1733 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_23030, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000974 DATIHC010000000
VERSION     DATIHC010000974.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1733
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23030"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            44..1654
                     /locus_tag="VLF16_16240"
     CDS             44..1654
                     /locus_tag="VLF16_16240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003300865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSX72484.1"
                     /translation="MFLRAYSVGLRNTVGFGILILILLCTGGIALSQLSNLRDDLVEV
                     KDVWMQGLDLIADIKSDRQLMRLNENEALAQPDELEALRAEIRAVEQRVSSHDDAYEK
                     TIILDEDRRLFEVYQAKSAAYEQSLGQVLDSLAAGRVDPAFEVQSERDFDALIVALDQ
                     LIALNNKGAEDAGNRAEKSATTATATFSLILGAAVIFTVVAAWLLSRSITQPLSELSR
                     SAQRIAGGDLTQAVSAEGNDEVTQVQRSLGNMQNTLRDTLQNIQNSATQLASAAEQLH
                     AVTDESAQGITRQNDEIQMAATAVTEMSAAVDEVARNANHTSDSSREAEQSAEAGRHQ
                     VSTTRSTIEQLSERLQITSGTIARLADEAIAIGRVLEVIRTIAEQTNLLALNAAIEAA
                     RAGDQGRGFAVVADEVRALAQRTQSSTQEIERMIGAIQSASRESVDAMGQSSEFASRS
                     SEMATQADSALALIAERVGQINEMNLVIASAAEEQAQVAREVDRNLVAIRDIAAQNAT
                     GAHQTSVASDQLARLATDLNGMVQRFRL"
BASE COUNT          325 a          588 c          573 g          247 t
ORIGIN      
        1 tggctagact cagcgaatct ccctctcgtt ggagtcgttc gccatgttcc tgcgtgcata
       61 cagtgtcggc ctgcgcaaca ccgtcggttt cgggattctg atactcatcc tgctttgcac
      121 agggggcatc gccctgagcc agttgtcgaa ccttcgggac gatctggtgg aggtgaagga
      181 cgtgtggatg caaggcctcg atctgatcgc ggatatcaaa tcggatcgcc agctcatgcg
      241 gctcaacgag aacgaagcac tcgcacagcc ggatgagctt gaggcgctcc gggcggagat
      301 tcgggcggtc gaacagcggg tcagcagtca cgacgacgct tacgagaaga ccattatcct
      361 cgacgaggac cgccgtctgt tcgaggtcta tcaggccaag agcgcggcct acgagcagag
      421 cctggggcag gtgctggaca gtctggctgc aggtcgggtg gaccctgcgt tcgaagtcca
      481 gtccgagcgg gatttcgacg ctctgatcgt cgccttggac caactgatcg ccctgaacaa
      541 caagggagcg gaggatgccg gcaatcgcgc ggaaaagagc gccacgaccg ccactgcgac
      601 cttcagcctt attctcggcg cggcggtgat cttcaccgtc gtcgccgcct ggctactcag
      661 ccgcagtatc acccagcccc tgtcggagct gtcgcgctcg gcgcagcgca tcgccggtgg
      721 ggacctgacc caggcggtca gcgccgaagg caacgacgag gtgacgcagg tacagcgctc
      781 gcttggcaat atgcagaaca ccctgcgcga cactctgcag aacatccaga actcggcgac
      841 ccagctggcc tcggccgccg aacagctgca cgcggtgacc gacgaatcgg cccagggcat
      901 tacccggcag aacgacgaaa tccagatggc cgccaccgcg gtcaccgaga tgtcggcggc
      961 ggtggacgag gtggcgcgca acgccaacca cacctcggac tcgtcacgcg aggcggagca
     1021 gagcgccgag gccgggcgcc atcaggtcag caccacgcgc agcaccatcg aacagctcag
     1081 cgaacgcctg cagatcacct ccggcaccat cgcccggctg gccgacgagg ccatcgccat
     1141 cggccgggtg ctggaagtga tccgcaccat cgccgagcag accaatttgc tcgccctcaa
     1201 cgccgccatc gaggcggcgc gggccggcga ccagggccgc ggtttcgcgg tggtggccga
     1261 cgaggtgcgc gcgctggccc agcgcaccca gagctcgacc caggagatcg agcggatgat
     1321 cggcgccatc cagagcgcca gccgcgagtc ggtggacgcc atgggccaga gcagcgagtt
     1381 cgcctcccgc agcagcgaga tggcgaccca ggccgacagc gccctggcgc tgatcgccga
     1441 gcgggtcggg cagatcaacg agatgaacct ggtgatcgcc agcgccgccg aggagcaggc
     1501 ccaggtggcc cgcgaggtgg accgcaacct ggtggccatc cgcgacattg ccgcgcagaa
     1561 cgccaccggc gcccaccaaa catcggtggc cagcgatcag ctggcgcgcc tggccaccga
     1621 cctcaacggc atggtgcagc gcttccgcct ctagtcctgc acctcttccg cgggacgcga
     1681 ggcgtcgacc tcgcgcgggc tgccgccgcc ggcctggcgc gccggatcga cgc
//
LOCUS       DATIHC010000975         1724 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_16275, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000975 DATIHC010000000
VERSION     DATIHC010000975.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1724
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16275"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..991
                     /locus_tag="VLF16_16245"
     CDS             <1..991
                     /locus_tag="VLF16_16245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016494745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSX72485.1"
                     /translation="MWNRAMEELTGISAQQVVGSRLLSLEEPWHDLLRDFIEQDEEHL
                     HKQHLALDGEVRWLNLHKAAIDEPLAPGNSGLVLLVEDVTETRVLEDQLVHSERLASI
                     GRLAAGVAHEIGNPVTGIACLAQNLREEREDDEELGELSTQILDQTKRISRIVQSLMN
                     FAHAGQQERAEYPVSLAEVAQDAIGLLSLNRNSTEVLFFNLCDPEHLAKGDPQRLAQV
                     LINLLSNARDASPAGGAIRVRSETAEHSVELIVEDEGTGIPQAIMDRLFEPFFTTKDP
                     GKGTGLGLALVYSIVEEHYGQIIIDSPADPERQRGTRFRVTLPRYVEATSVAT"
     gene            1064..>1724
                     /locus_tag="VLF16_16250"
     CDS             1064..>1724
                     /locus_tag="VLF16_16250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HSX72486.1"
                     /translation="MPHILIVEDETIIRSALRRLLERNQYQVSEAGSVQEAQERYSIS
                     SFDLVVSDLRLPGAPGTELIKLAEGSPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDH
                     DEMLQAVARILRDHQEARRNPPSEAPSKAAGKAGAPAEGEIGIIGSCAPMQDLYSKIR
                     KVAPTDSNVLIQGESGTGKELVARALHNLSKRAKAPLISVNCAAIPETLIESELFGHE
                     KG"
BASE COUNT          328 a          597 c          559 g          240 t
ORIGIN      
        1 gatgtggaac cgggccatgg aggagctcac cggcatcagc gcgcagcagg tggtcggctc
       61 gcgcctgctg agcctggagg agccctggca cgatctgctg cgggacttca tcgagcagga
      121 cgaggagcat ctgcacaagc agcatctggc actggacggc gaggtgcgct ggctcaacct
      181 gcacaaggcg gcgatcgacg agccgctggc ccccggcaac agcggcttgg tgctgctggt
      241 cgaggacgtc accgagaccc gcgtgctgga ggaccagctg gtgcactccg agcgcctggc
      301 ctcgatcggc cggctggccg ccggcgtggc ccacgagatc ggcaacccgg tcaccggcat
      361 cgcctgcctg gcgcagaatc tgcgcgagga gcgcgaggac gacgaggagc tgggcgagct
      421 gagcacccag atcctcgacc agaccaagcg catctcgcgc atcgtccagt cgctgatgaa
      481 cttcgcccat gccggccagc aggagcgcgc cgagtacccg gtgagcctgg ccgaggtggc
      541 gcaggacgcc atcggcctgc tgtcgctcaa ccgcaacagc accgaggtgc tgttcttcaa
      601 cctgtgcgac ccggaacacc tggccaaggg cgatccgcag cgcctggccc aggtgctgat
      661 caatctgctg tccaacgccc gcgacgcctc gccggcaggc ggcgccatcc gcgtgcgcag
      721 cgaaaccgcg gagcacagcg tcgagctgat cgtcgaagac gagggcactg gcatcccgca
      781 ggcgatcatg gaccgcctgt tcgagccctt cttcaccacc aaggacccgg gcaagggcac
      841 cggtttgggc ctcgcgctgg tctattccat cgtggaagag cattatggac agatcatcat
      901 cgacagcccg gccgatccgg aacgccagcg cggaacccga ttccgcgtta ccctgccgcg
      961 ttatgtcgaa gcgacgtccg tagcgacctg agtagtgacc tggaatccgt ccgcgcgagc
     1021 gcccagcccc ggacggcatt cggagaccgt cgagagagaa tcaatgccgc atatcctcat
     1081 cgtcgaagac gaaaccatca tccgctccgc cctgcgccgc ctgctggaac gcaaccagta
     1141 ccaggtcagc gaggccggct cggtgcagga ggcccaggag cgctacagca tctcctcctt
     1201 cgatctggtc gtcagcgacc tgcgcctgcc cggcgcgccc ggcaccgagc tgatcaagct
     1261 ggccgaaggc agcccggtgc tgatcatgac cagctacgcc agcctgcgct cggcggtgga
     1321 ctcgatgaag atgggcgcgg tggactacat cgccaagccc ttcgaccacg acgaaatgct
     1381 ccaggccgtg gcgcgcatcc tgcgcgatca tcaggaggcc cggcgcaacc caccgagcga
     1441 ggcgccgagc aaggccgcag gcaaagcggg cgccccggcc gagggcgaga tcggcatcat
     1501 cggctcctgc gcgcccatgc aggacctcta cagcaagatc cgcaaggtcg ccccgaccga
     1561 ctccaacgtg ctgatccagg gcgagtccgg taccggcaag gaactggtgg cccgcgccct
     1621 gcacaacctg tccaaacgcg ccaaagcgcc actgatctcg gtgaactgcg cggcgattcc
     1681 cgagaccctg atcgaatccg agctgttcgg ccacgagaaa ggtg
//
LOCUS       DATIHC010000976         6474 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_39311, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000976 DATIHC010000000
VERSION     DATIHC010000976.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6474)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6474)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6474
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39311"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1087)
                     /locus_tag="VLF16_16255"
     CDS             complement(<1..1087)
                     /locus_tag="VLF16_16255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSX72487.1"
                     /translation="MTERLNNDFQFLEVGRKDPKKKLLRQRKKEFVEIYEPFKPAQAA
                     DQAHRCLGCGNPYCEWKCPVHNFIPNWLKLVSEGNILAAAELSHQTNTLPEVCGRVCP
                     QDRLCEGACTLNDGFGAVTIGSVEKYITDTAFAMGWRPDMSKVKPTGKRVAVIGAGPA
                     GLGCADVLVRNGVTPVVFDKNPEIGGLLTFGIPEFKLEKSVLSRRREVFTGMGIEFRL
                     NTEIGKDITLQQLLDEYDAVFMGMGTYTYMKGGFPGEDLPGVTDALDFLIANVNRNLG
                     FEKSPEDFVDMKGKKVVVLGGGDTAMDCNRTSIRQGAKSVTCAYRRDAANMPGSRKEV
                     KNAKEEGVKFLFNRQPIAIVGEGKVEGV"
     gene            complement(1121..5566)
                     /gene="gltB"
                     /locus_tag="VLF16_16260"
     CDS             complement(1121..5566)
                     /gene="gltB"
                     /locus_tag="VLF16_16260"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006537 - glutamate biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HSX72488.1"
                     /translation="MKAGLYHPDQFKDNCGFGLIAHMEGEASHHLLKTAIEALTCMTH
                     RGGINADGKTGDGCGLLIQKPDLFLRAVAKEQFGSDLPQQYAVGMVFFNQDSGKAEAA
                     RANMNREIEAAGLQLIGWRKVPIDTSVLGRLALERLPQIEQVFIGGEGLDDQQFAIKL
                     FSARRRSSVANAADTDHYICSFSPKTIIYKGLMMPADLQQFYPDLGDERLQTAICVFH
                     QRFSTNTLPKWPLAQPFRFLAHNGEINTITGNRNWALARRLKFANELIPDLEELGPLV
                     NRVGSDSSSMDNMLELMVTGGIDLFRGVRMIIPPAWQNMETMDADLRAFYEYNSMHME
                     PWDGPAGVVLTDGRHAVCLLDRNGLRPARWVTTKNGYITLASEIGVWDYKPEDVIAKG
                     RVGPGQILAVDTETGQVLDTDAIDNRLKSRHPYKQWLRQNAVRIQAKLDDDHGVASYD
                     ADQLKQYMKMFQVTFEERDQVLRPLGEQGQEAVGSMGDDTPMAVLSQRVRSPFDYFRQ
                     QFAQVTNPPIDPLRESIVMSLEICLGAERNIFEESPAHASRVMLSSPVISPAKWRALM
                     SLSAPGFERHVIDLNYDPAIGLEAAVRNIADQAEEAVRAGKVLLVLTDRHIAPGKLPA
                     HAALATGAVHHRLTDKGLRCDCNILVETATARDPHHFAVLVGFGASAVYPFLAYEVLA
                     DLIRTGEVLGDLYEVFKYYRKGISKGLLKILSKMGISTIASYRGAQLFEAVGLSGEVT
                     DLCFKGVASRIQGARFIDIESEQKLLAFEAWNNRKPIQQGGLLKFVYGGEYHAYNPDV
                     VRTIQEAVQQGDYAKYKEYAALVDLRPASMIRDLLKLKLADQALPLDQVEPLNEVLKR
                     FDSAGISLGALSPEAHEAIAEAMNRLGARSNSGEGGEDPARYGTVRSSKIKQVATGRF
                     GVTPEYLVNAEVLQIKVAQGAKPGEGGQLPGGKVNGLIARLRYAVPGVTLISPPPHHD
                     IYSIEDLAQLIYDLKQVNPAALVSVKLVAEAGVGTIAAGVAKAYADLITISGYDGGTG
                     ASPLSSIKYAGSPWELGLAETHQTLRGNDLRGKVRVQTDGGLKTGLDVIKAAILGAES
                     FGFGTGPMVALGCKYLRICHLNNCATGVATQNDKLRKDHFIGTVEMVMNYFTYIAEDT
                     REWLAKLGVRSLGELIGRTDLLEVLPGETAKQGNLDLTPLLGSDLIPADKPQFCEVEK
                     NPPFDQGLLAEKMVEIAAAAIAGKTGGDFELDICNCDRSIGARVSGEIAKQYGNQGMK
                     DAPITFRFKGTAGQSFGVWNAGGLHLRLEGDANDYVGKGMTGGKLVIVPPAGSPFKTQ
                     ESAIIGNTCLYGATGGRLFAAGTAGERFGVRNSGAHAVVEGTGDHCCEYMTGGFVCVL
                     GKTGVNFGSGMTGGFAYVLDLDNSFVDRVNHELVEIQRISNEAMEAYRSHLREVLSEY
                     VAETSSPWGTHLLENLEDYLRKFWLVKPKAASLGSLLSSTRANPQ"
     gene            complement(5813..>6474)
                     /locus_tag="VLF16_16265"
     CDS             complement(5813..>6474)
                     /locus_tag="VLF16_16265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003453183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HSX72489.1"
                     /translation="QPLPLPLVGEAQPVIREPLAQASGMEEGEEGDATEEQASSAAST
                     PVTTPVPVVPVVPTVASAAAEQPVAPKPESTQAQVQPVPATPAIKPSPAPVAAAPKPA
                     APKPAAPAVKAEPSLASAAPAPGAEWYASRPIGNYALQILGTRSESSAKAFVSKNGTE
                     YRYFKKLHQGQALYVVTYGQFSSRAAAQAAIKSLPASVQAGKPWPRSFASIQQEAVRA
                     R"
BASE COUNT         1032 a         2032 c         2200 g         1210 t
ORIGIN      
        1 tgacgccttc gaccttgccc tcgccgacaa tggcaatggg ctggcggttg aagaggaact
       61 taacgccttc ttccttggcg ttcttcactt ccttgcgcga acccggcatg ttcgctgcgt
      121 cacgccggta ggcacaggtc acgctcttgg cgccctggcg aatcgaggtg cggttgcagt
      181 ccatggccgt gtcgccaccg ccgagcacaa cgaccttctt acccttcatg tcgacgaagt
      241 cttccggcga tttctcgaag ccgaggttgc ggttgacgtt ggcgatcagg aagtccagcg
      301 cgtcggtgac gcccggcagg tcctcgcccg ggaagccgcc cttcatgtag gtgtaggtgc
      361 ccatgcccat gaacacggca tcgtactcat ccagcagctg ctgcagggtg atgtccttgc
      421 cgatctcggt gttcaggcgg aactcgatac ccatgccggt gaagacttcg cgacggcggc
      481 tgagcacgct cttctcgagc ttgaactcgg ggatgccgaa ggtcagcagg ccgccgattt
      541 ccgggttctt gtcgaacacc accggggtca cgccgttgcg caccagcacg tcggcgcagc
      601 ccaggccggc cgggccggcg ccgatcacgg cgacacgctt gccggtcggc ttgaccttgg
      661 acatgtccgg gcgccagccc atggcgaagg cggtgtcggt gatgtacttc tccaccgaac
      721 cgatggtcac cgcgccgaag ccgtcgttga gggtgcaggc accctcgcac agacggtcct
      781 gcgggcacac gcggccgcag acttccggca gggtgttggt ctggtggctc agctcggcgg
      841 cggccaggat gttgccttcc gagaccagct tgagccagtt cggaatgaag ttgtgcacgg
      901 ggcacttcca ctcgcagtac gggttgccgc agcccaggca acggtgtgcc tggtcggcgg
      961 cctgggccgg cttgaagggc tcgtagattt ccacgaactc cttcttgcgc tggcgcagga
     1021 gcttcttctt cggatccttg cgcccgacct cgaggaactg gaagtcattg ttcagacgtt
     1081 cagtcatttc aaaacctcat caaaccactt caggcgcttg ttattgcggg ttggcacggg
     1141 tgctggaaag cagcgaaccg aggctcgcgg ccttcggctt gaccagccag aacttgcgca
     1201 ggtaatcctc caggttctcg agcaggtgag tgccccaggg actggaggtt tccgccacgt
     1261 actcgctcag cacttcgcgc agatggctgc ggtacgcctc catggcctcg ttgctgatgc
     1321 gctggatttc caccagctcg tggttgacgc ggtcgacaaa gctgttgtcc aggtcgagca
     1381 cgtaggcgaa gccgccggtc atgcccgagc cgaagttcac gccggtcttg cccagtacgc
     1441 agacgaagcc gccggtcatg tattcgcagc agtggtcacc ggtgccttcc accacggcgt
     1501 gtgcaccgga gttgcgcacg ccgaagcgct cgccagcggt accggcggcg aacaggcggc
     1561 caccggtggc gccgtacagg caggtgttgc cgatgatggc cgactcctgg gtcttgaacg
     1621 ggctgccggc cggtggaacg atcaccagct tgccgccggt catgcccttg ccgacgtagt
     1681 cgttggcgtc gccttccagg cgcaggtgca ggccaccggc gttccacacg ccgaaactct
     1741 gcccggcggt gcccttgaag cggaaggtga tcggcgcgtc cttcatgccc tggttgccgt
     1801 actgcttggc gatctcgccg gacacgcgcg caccgatgga gcggtcgcag ttgcagatgt
     1861 ccagctcgaa gtcgccgccg gtcttgccgg caatggcggc cgcggcgatc tcgaccatct
     1921 tctcggccag caggccctgg tcgaacggcg ggttcttctc gacttcgcag aactgcggct
     1981 tgtcggccgg gatcaggtcg ctgccgagca gcggggtcag atccaggttg ccctgcttgg
     2041 cggtctcgcc cggcagcacc tcgagcagat cggtgcgacc gatcagctcg cccaggctgc
     2101 gtacgcccag cttggccagc cactcgcggg tgtcctcggc gatgtaggtg aagtagttca
     2161 tcaccatttc gacggtgccg atgaagtggt ccttgcgcag cttgtcgttc tgcgtagcga
     2221 cgccggtggc gcaattgttc aggtgacaga tacgcaggta cttgcagccc agggcgacca
     2281 tcgggccggt accgaagccg aagctctcgg cgccgaggat ggcggccttg atcacgtcga
     2341 ggccggtctt caggccgccg tcggtctgca cccgcacctt gccgcgcagg tcgttgccgc
     2401 gcagggtctg gtgggtctcg gcaagaccga gctcccaggg gctgccggcg tacttgatgg
     2461 agctcagcgg cgaggcgccg gtgccaccgt cgtaaccgga gatggtgatc aggtcggcgt
     2521 aggccttggc cacgccggcg gcaatggtgc cgacgccggc ttccgccacc agcttgaccg
     2581 acaccagcgc ggccgggttg acctgcttga ggtcatagat cagctgcgcc aggtcttcga
     2641 tcgagtagat gtcgtggtgc ggcggcggcg agatcagggt cacaccaggc accgcatagc
     2701 gcagacgcgc gatcagaccg ttgaccttgc cgcccggcag ctggccgccc tcgccgggct
     2761 tggcgccctg ggcgaccttg atctgcagca cttcggcgtt gaccaggtat tccggagtca
     2821 caccaaagcg gccggtggcc acctgcttga tcttggagct gcgcacggtg ccgtagcggg
     2881 ccgggtcttc gccgccctcg ccggagttgg agcgcgcgcc cagacggttc atcgcctcgg
     2941 cgatggcctc gtgggcctcc ggcgacagcg cgccgaggga gataccggcg gaatcgaagc
     3001 gcttgagcac ttcgttcagc ggctcgacct gatccagcgg cagcgcctga tcggccagtt
     3061 tcagcttgag caggtcgcgg atcatcgacg ccgggcgcag atcgaccagc gcggcgtatt
     3121 ccttgtactt ggcgtagtcg ccctgctgca ctgcttcctg gatggtgcgg accacgtccg
     3181 ggttgtaggc atggtattcg ccgccgtaga cgaacttcag caggccgccc tgctggatcg
     3241 gcttgcggtt gttccaggcc tcaaaggcca gcagcttctg ctcggactcg atgtcgatga
     3301 agcgcgcacc ctggatgcgg ctggcgacgc ccttgaagca caggtcggtg acctcgccgg
     3361 acaggccgac agcctcgaac agctgggcgc cccggtagga ggcgatggtg gagatgccca
     3421 tcttcgacag gatcttcagc aggcctttgg agatgccttt gcggtagtac ttgaacacct
     3481 cgtagaggtc gcccagcact tcgccggtgc ggatcaggtc ggccagcact tcgtaggcga
     3541 ggaaggggta cacggcggaa gcgccgaagc ccaccagcac ggcgaagtgg tgcggatcgc
     3601 gggcggtggc ggtctcgacc aggatgttgc agtcgcagcg caggcccttg tcggtcaggc
     3661 ggtggtgcac ggcgccggtg gccagcgcgg catgggccgg cagcttgccc ggggcgatgt
     3721 ggcggtcggt gaggaccagc agtaccttgc cggcacgcac ggcttcctcg gcctggtcgg
     3781 cgatgttgcg caccgcggct tccaggccga tggccgggtc gtagttgagg tcgatgacgt
     3841 gccgctcgaa gcccggggcg ctcaggctca tcagcgcacg ccacttggcc ggggatataa
     3901 ccgggctgct cagcatgacg cggctggcat gggccgggga ttcctcgaag atgttgcgct
     3961 cggcgcccag gcagatctcc agggacatga cgatcgactc gcgcagcggg tcgatcggcg
     4021 ggttggtcac ctgggcgaac tgctggcgga aatagtcaaa aggcgagcgc acgcgctggc
     4081 tgagtaccgc catcggcgtg tcgtcaccca tcgagccgac cgcttcctgg ccctgctcgc
     4141 cgagcgggcg cagcacctgg tcacgctcct cgaaggtgac ctggaacatc ttcatgtact
     4201 gcttgagctg gtcggcgtcg tagctggcca cgccgtggtc gtcgtccaac ttggcctgga
     4261 tgcgcacggc attctggcgc agccactgct tgtacgggtg gcgcgacttc aggcggttgt
     4321 cgatggcgtc ggtgtccagc acctggccgg tctcggtgtc caccgcgagg atctggcccg
     4381 ggccgacacg gcccttggcg atcacgtctt ccggcttgta gtcccacacg ccgatttccg
     4441 atgccagggt gatgtagccg ttcttggtgg tgacccagcg cgccgggcgc aggccgttgc
     4501 ggtcgagcag gcagacggcg tggcggccgt cggtcagcac cacgccggcg gggccgtccc
     4561 acggctccat gtgcatggag ttgtactcat agaacgcgcg caggtcggcg tccatggtct
     4621 ccatgttctg ccaggccggc gggatgatca tgcgcacgcc gcggaacaag tcgatgccgc
     4681 cggtgaccat cagctcgagc atgttgtcca tgctcgagga gtcggagccg acgcggttga
     4741 ccagtgggcc cagctcttcc aggtccggaa tcagctcgtt ggcgaacttc aggcggcggg
     4801 ccagggccca gttgcgattg ccggtgatgg tgttgatctc gccgttgtgg gcgaggaagc
     4861 ggaagggctg cgccagcggc cacttcggca gggtgttggt ggagaaacgc tggtggaaca
     4921 cgcagatggc ggtctgcagg cgctcgtcac cgaggtccgg atagaactgc tgcaggtccg
     4981 ccggcatcat caggccttta tagatgatgg tcttcggcga gaagctgcag atgtagtggt
     5041 cggtgtcggc ggcgttggcc accgaggagc gacggcgggc gctgaacagc ttgatggcga
     5101 actgttggtc gtccaggcct tcaccgccga tgaatacctg ctcgatctgc ggcaggcgct
     5161 ccagggcgag gcggccgagc acgctggtgt cgatcggcac cttgcgccag ccgatcagct
     5221 gcaggccggc ggcctcgatc tcgcgattca tgttggcgcg ggcggcctcg gccttgcccg
     5281 agtcttggtt gaagaacacc atgcctaccg catattgctg cggcagatcg ctgccgaact
     5341 gctccttggc gactgcgcgc aggaacaggt cgggcttctg gatcagcaga ccacaaccgt
     5401 caccggtctt gccgtcggcg ttgataccgc cgcggtgggt catgcaggtc agtgcttcga
     5461 tggcggtctt cagcaagtga tggctcgcct caccttccat gtgggcgatc aagccgaagc
     5521 cgcagttatc cttgaactga tcaggatggt acagacctgc tttcatagac actctcacca
     5581 ggctgcctca agaggcaaat tgctttctaa ttcatagacc taggcgcctg ccacaccgga
     5641 gcgcgcccca gtttggcgca ggcaaagggg ggtcatttta catagcgacc ccgaccccca
     5701 caaatttttg tggcggccaa atgaaaactt ctgtcgcctg gacgaaaggc ggcgaccgaa
     5761 ggcccgtgct aggaccattc agtcaccaaa tgagaggcgg gttcgcgggc cctcagcggg
     5821 cccggacggc ctcttgctgg atgctggcga agctgcgtgg ccagggcttg ccggcctgca
     5881 cgctggccgg cagcgacttg atcgccgcct gggcggcggc gcggctggag aactgcccat
     5941 aggtcacgac atagagtgcc tggccctggt gcagcttctt gaagtaacgg tattcggtgc
     6001 cgttcttgct gacaaaggcc ttggcgctac tctccgagcg ggtgccgagg atctgcagcg
     6061 cgtagttgcc gattggacgg ctcgcatacc attcggcgcc cggggcggga gcggcactgg
     6121 ccaggctcgg ctctgccttg acagcaggcg cagcgggctt gggggccgca ggctttggcg
     6181 ccgcggcgac aggcgctgga gaaggtttaa tcgcaggcgt agcgggaacc ggttgcacct
     6241 gcgcctgagt cgactcgggc ttcggtgcaa ctggctgctc cgccgcagcg ctggccacgg
     6301 tcggcactac cggcacgacc ggaaccggag tggtcaccgg agtcgatgca gcggacgaag
     6361 cctgctcttc ggtggcatca ccctcttcac cctcctccat gccggaggct tgagccagag
     6421 gctcgcgaat caccggttgc gcctccccca ccagaggcaa aggcagcggt tgac
//
LOCUS       DATIHC010000977         2355 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_39318, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000977 DATIHC010000000
VERSION     DATIHC010000977.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2355
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39318"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..285
                     /gene="atpF"
                     /locus_tag="VLF16_16270"
     CDS             <1..285
                     /gene="atpF"
                     /locus_tag="VLF16_16270"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000276 - mitochondrial
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_component: GO:0045264 - plasma membrane
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HSX72490.1"
                     /translation="QQLREAKTQAAEIIEQAKKRATQIVDEARDQARTEADRVKAQAQ
                     AEIEQELNSVKDALRAQVGALAVGGAEKILGASIDQNAHAELVNKLAAEI"
     gene            298..834
                     /locus_tag="VLF16_16275"
     CDS             298..834
                     /locus_tag="VLF16_16275"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014861150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HSX72491.1"
                     /translation="MAELTTLARPYAKAAFEYAQGNQQLAAWSAMLGLAAAVSQDDHM
                     QRVLQAPRLTSAEKAAAFNEVCGDKFDAKAQNFISVLSENDRLALLPEIAALFETYKA
                     EQEKSVDVEVTSAFALSTEQQDKLAKVLNARLSREVRLHVTEDASLLGGVVVRAGDLV
                     IDGSVRGKLAKLAEALKS"
     gene            856..>2355
                     /gene="atpA"
                     /locus_tag="VLF16_16280"
     CDS             856..>2355
                     /gene="atpA"
                     /locus_tag="VLF16_16280"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HSX72492.1"
                     /translation="MQQLNPSEISEIIKGRIEKLDVSSQARNEGTVVSVSDGIVRIYG
                     LADVMYGEMIEFPGGVYGMALNLEQDSVGAVVLGAYTTLAEGMSAKCTGRILEVPVGP
                     ELLGRVVDALGNPIDGKGPINAAATDAVEKVAPGVIWRKSVDQPVQTGYKSVDAMIPV
                     GRGQRELIIGDRQIGKTALAVDAIINQKNSGIRCVYVAIGQKQSTIANVVRKLEESGA
                     LANTIVVAASASESAALQFLAPYAGCTMGEYFRDRGEDALIVYDDLSKQAVAYRQISL
                     LLRRPPGREAYPGDVFYLHSRLLERASRVSEEYVEKFTNGAVTGKTGSLTALPIIETQ
                     AGDVSAFVPTNVISITDGQIFLESAMFNSGIRPAVNAGISVSRVGGAAQTKIIKKLSG
                     GIRTALAQYRELAAFAQFASDLDEATRKQLEHGQRVTELMKQKQYAPMSIADMSVSLY
                     AAERGFLTDVEVNKVGAFEAALLGYFNRELADLMAKINEKGDFNDEIDAG"
BASE COUNT          485 a          736 c          713 g          421 t
ORIGIN      
        1 cagcaactgc gcgaagccaa aacccaggct gctgaaatca tcgagcaagc caagaagcgc
       61 gcgacccaga tcgtcgacga agcccgtgat caggctcgta ccgaggctga ccgcgtgaag
      121 gctcaggctc aggccgagat cgaacaggaa ctgaacagcg tcaaagatgc cctgcgtgcc
      181 caagtgggtg ccctggccgt cggcggtgcc gagaagatcc tgggtgcgtc catcgatcaa
      241 aacgcgcatg cggagctggt taacaaactg gccgccgaaa tctaagcgag ggcgatcatg
      301 gcagaactga ccacgctggc ccgaccttac gctaaggctg ccttcgagta cgcccaaggc
      361 aatcagcagc tggccgcttg gtcggccatg ctgggcctcg ctgctgcggt gtcgcaggac
      421 gaccacatgc agcgcgtgct ccaggccccg cgtttgacga gcgcagagaa ggccgccgct
      481 ttcaacgaag tgtgcggtga caagttcgac gccaaggcac agaacttcat ttccgttctt
      541 tccgaaaacg accgcctcgc gctgttgccg gaaatcgccg ccctgttcga gacctacaag
      601 gccgaacagg agaagtcggt ggacgtggaa gtgaccagtg ccttcgcatt gagcacagaa
      661 cagcaagaca aactcgccaa ggttctcaac gcacggctca gccgagaagt gcgtctgcac
      721 gtgacggaag acgcttccct gctgggtgga gtggtagtcc gcgcgggcga cctggttatc
      781 gatggctcgg ttcgcggcaa gctcgcgaaa ctggccgaag cgttgaaatc ttgagtttga
      841 aggggcagca gagcaatgca gcaactcaat ccttccgaaa ttagtgaaat catcaaggga
      901 cgtatcgaga aactcgacgt ctcttcccaa gcccgcaacg aaggcaccgt ggtatccgtc
      961 tccgacggta tcgtgcgtat ctacggtctg gccgacgtca tgtacggcga aatgatcgag
     1021 ttcccgggcg gtgtctacgg tatggcgctg aacctggagc aagactccgt cggtgccgtg
     1081 gttctgggtg cgtacaccac cctggccgaa ggcatgagcg ccaagtgcac tggccgcatc
     1141 ctggaagttc cggtcggtcc ggaactgctg ggccgcgtgg tcgatgccct gggcaacccg
     1201 atcgatggca agggcccgat caacgccgcc gctaccgacg ctgtcgagaa agtggctccg
     1261 ggcgtgatct ggcgtaagtc ggtcgaccag ccggtacaga ccggctacaa gtcggtcgac
     1321 gccatgatcc cggtaggccg tggccagcgt gagctgatca tcggtgaccg tcagatcggt
     1381 aagactgccc tggccgtcga cgccatcatc aaccagaaga acagcggcat ccgctgcgtc
     1441 tacgtggcta tcggtcagaa gcagtcgacc atcgccaacg tggtgcgcaa gctggaagag
     1501 tccggcgccc tggccaacac catcgtggtg gccgcgtccg cttccgaatc ggctgccctg
     1561 cagttcctgg ctccgtacgc cggttgcacc atgggtgagt acttccgcga ccgcggcgaa
     1621 gacgccctga tcgtgtacga cgacctgtcc aagcaggccg ttgcctaccg ccagatctcc
     1681 ctgctgctgc gccgtccgcc gggccgcgaa gcctacccgg gagacgtgtt ctatctccac
     1741 agccgcctgc tggagcgcgc ttcccgcgtt tccgaggaat acgtcgagaa gttcaccaat
     1801 ggcgccgtga ctggcaagac cggttccctg accgctctgc cgatcatcga aacccaggcc
     1861 ggtgacgtgt ccgcgttcgt tccgaccaac gtgatttcga tcaccgacgg tcagatcttc
     1921 ctggaatccg ccatgttcaa ctcgggcatc cgtccggccg tcaacgccgg tatctcggta
     1981 tcccgcgttg gtggcgccgc ccagaccaag atcatcaaga agctctccgg tggtatccgt
     2041 accgctctgg ctcagtaccg tgaactggcg gccttcgccc agttcgcttc tgacctggac
     2101 gaagccaccc gcaagcagct cgagcacggt cagcgtgtta ccgagctgat gaagcagaag
     2161 cagtacgcgc ccatgtccat cgccgacatg tccgtgtccc tgtacgctgc cgagcgcggc
     2221 ttcctgaccg acgtggaagt gaacaaagtt ggcgccttcg aagctgccct gctgggctac
     2281 ttcaatcgtg agctggccga tctgatggcc aagatcaacg agaaaggtga cttcaacgac
     2341 gaaatcgacg caggc
//
LOCUS       DATIHC010000978         2753 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_46451, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000978 DATIHC010000000
VERSION     DATIHC010000978.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2753
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46451"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..185)
                     /locus_tag="VLF16_16285"
     CDS             complement(<1..185)
                     /locus_tag="VLF16_16285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003299615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4823 domain-containing protein"
                     /protein_id="HSX72493.1"
                     /translation="MRSLILLLALVALGGCMKVSDMAAGTEYHLRDAGVLDRSDTRRS
                     ASWRLQADSLVFIAQGH"
     gene            complement(254..1147)
                     /locus_tag="VLF16_16290"
     CDS             complement(254..1147)
                     /locus_tag="VLF16_16290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HSX72494.1"
                     /translation="MSAEFPIAYIEPVFRPPSEAHSLILPVTNGCSWNACTFCEMYTA
                     PQKKFRARDEDQVLEEIRRAGERLIVQRVFLADGDALVLPTRRLLNILRAIREHLPEV
                     GRVSSYCLPRNLRKKSVEELKELADAGLKMAYVGCESGDDEVLARVNKGETYESSLSA
                     LDKLGQAGITRSVMILNGLGGIALSAQHADNSARLMNAAQPEFLSTLVVSFPMGEERF
                     RQGFVDFQPLGQHELFLEVERLLQGLELRDTVFRSDHASNYLVLKGNLGADKARLLAQ
                     VRQAIERPDQARLRQEWQRGL"
     gene            complement(1289..2257)
                     /locus_tag="VLF16_16295"
     CDS             complement(1289..2257)
                     /locus_tag="VLF16_16295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010208395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HSX72495.1"
                     /translation="MIVDRQGRRFRNLRISLTAACNYACTYCVPDGKRLVAAQDELSA
                     EAMVRGVAYLIEAAGIERLRITGGEPLVSPKLEFFLREVSRLGLQDIGLTTNGQLLAR
                     KLPLLLECGLRRINVSLDTLDPEDFKRIARGGDLATVLQGLEEARAAGLKIKVNMVPL
                     RGQNHEQVLPMLDYCLERGFELRFIELMRMGHLAREGASFQQQFYGMPELLAAVAERH
                     EFAQAPAPLDANALRYEIPGHGFFGVIANESVPFCRTCSRLRLSSTGWLHGCLSSSNR
                     HYVGDLLDKPRHQALPALQRLLVRALADKQDVAFAGGATVMKIIGG"
     gene            complement(2337..>2753)
                     /locus_tag="VLF16_16300"
     CDS             complement(2337..>2753)
                     /locus_tag="VLF16_16300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR-like C-terminal domain-containing protein"
                     /protein_id="HSX72496.1"
                     /translation="LFHSEDVARDKEALSRAYFEFRMRDPQRYRLFDRLEEKVVKGNQ
                     VPEMVEQLHKIRASNFERLTHLIKGRIEEGKLEDVPPYFHYCAAWALVHGAVALYHSP
                     FWSSVLEDQDGFFQFLMDIGVRMGNKRKRDGDAPAA"
BASE COUNT          487 a          889 c          911 g          466 t
ORIGIN      
        1 tagtggccct gggcgatgaa caccagagaa tcagcctgta gccgccagga ggcggaacgg
       61 cgggtgtcgc tgcggtccag cacgccggcg tcacgcaggt ggtattcggt gccggcggcc
      121 atgtcactga ccttcatgca gccgccaagc gcgaccagcg ccagcagcag aatcaagcta
      181 cgcattggat tttctccctg ccggtgacgg aaaaccggcg gatggagaga catagcagct
      241 tccgcgccaa ccctcacaat cccctctgcc attcctggcg caaccgcgcc tggtccggtc
      301 gctcgatggc ctggcgcacc tgcgccagca gcctggcctt gtcggcaccc agattgccct
      361 tgagcaccag gtagttggac gcgtgatcgc tgcggaacac cgtgtcgcgc agctccaggc
      421 cctgcagcag gcgctccacc tccagaaaca gctcgtgctg gcccaacggt tggaaatcca
      481 cgaagccctg gcggaaacgc tcctcgccca tgggaaagct gaccaccagc gtggagagga
      541 attccggctg cgcggcgttc atcaggcgcg ccgagttgtc cgcatgctgc gcgctgaggg
      601 cgatgccgcc gaggccgttg aggatcatca ccgagcgggt gatgccggcc tggcccagct
      661 tgtccagggc gctgaggctg gattcgtagg tttcgccctt gttgacccgc gccagcacct
      721 cgtcatcgcc ggactcgcag ccgacatagg ccatcttcag cccggcgtcg gccagctcct
      781 tgagctcctc caccgacttc ttgcgcaggt tgcgtggcag gcagtagctg gaaacccgcc
      841 cgacctcggg caggtgctcg cggatggcgc gcaggatgtt cagcagacgc cgcgttggca
      901 acaccagggc atcgccgtcg gcaaggaaca cccgctgcac gatcagccgt tcgccggcgc
      961 gacggatttc ctccagcacc tggtcctcgt cgcgggcgcg gaatttcttc tgtggcgccg
     1021 tgtacatctc gcaaaaggta caggcgttcc aggaacagcc attggtgacc ggcaggatca
     1081 gggaatgggc ttcgctcggc ggacggaaca ccggctcgat ataggcgatg ggaaattcgg
     1141 cggacatggc ttaagacttt cggttaacga tgatcttgcg agctagagcc aggctaggcg
     1201 aaagcaggcg aggcagcgga gtttacaggc ggtaaatgag catgccgagc ctgctttcaa
     1261 caacgcatgg ccgacgcgca gcagatcatc agccgccgat gattttcatg acagtggcgc
     1321 cgcccgcaaa ggcgacgtcc tgtttgtcgg ccagggcccg caccagcagc cgctgcagcg
     1381 ccggcagggc ctggtggcgc ggcttgtcga gcaggtcgcc gacatagtgg cggttgctcg
     1441 aggacaggca gccatgcagc cagccggtcg aggacaggcg caggcgcgag caggtgcggc
     1501 agaacggcac gctctcgttg gcgatcacgc cgaagaaacc gtggccggga atctcgtagc
     1561 gcaacgcgtt ggcgtccagc ggtgctggcg cctgggcgaa ctcatggcgc tcggcgaccg
     1621 ccgccagcag ctcgggcatg ccgtaaaact gctgctggaa gctcgccccc tcgcgggcca
     1681 gatggcccat gcgcatcagc tcgatgaagc gcagctcgaa gccacgttcc aggcagtagt
     1741 cgagcatcgg cagcacctgt tcgtggttct gcccgcgcag cggcaccatg ttgaccttga
     1801 tcttcagccc ggccgcccgc gcctcttcca ggccctgcag cacggtcgcc aggtcgccgc
     1861 cgcgggcgat gcgcttgaag tcctcgggat cgagcgtgtc cagcgagacg ttgatgcgtc
     1921 tgagcccgca ctccagcagc agcggcagct tgcgcgcgag caactggcca ttggtggtca
     1981 ggccgatgtc ctgcaggccg aggcggctga cttcacgcag gaagaattcg agcttggggc
     2041 tgaccagcgg ttcgccgccg gtgatgcgca gccgttcgat gccggccgct tcgatcaggt
     2101 aggccacgcc gcgcaccatg gcctcggcgg acagctcgtc ctgggccgcg accagacgct
     2161 tgccgtccgg cacgcaatag gtgcaggcat agttgcaggc agcggtcagg ctgatgcgca
     2221 ggttgcggaa gcgccgcccc tggcggtcaa cgatcatggt gaactccggc tgtgttcgct
     2281 ccggagtata tgcccgccgc cgactgcatc aaacgcatca ttggcgggct gaatgatcag
     2341 gccgccggcg cgtcgccgtc gcgcttgcgc ttgttgccca tgcgcacgcc gatgtccatg
     2401 aggaactgga agaagccatc ctgatcttcc agcacgctgc tccagaacgg cgagtggtac
     2461 agggccacgg cgccgtgcac cagcgcccag gcggcgcagt agtggaagta agggggcacg
     2521 tcttccagct tgccttcctc gatgcggccc ttgatcaggt gcgtcaggcg ctcgaagttg
     2581 gaggcgcgga tcttgtgcag ttgctcgacc atctccggca cctgattgcc cttgaccacc
     2641 ttctcttcca ggcggtcgaa caggcgatag cgctgcgggt cgcgcatgcg gaactcgaag
     2701 taggcgcggg aaagggcttc cttgtcgcgg gccacatcct cggaatggaa cag
//
LOCUS       DATIHC010000979         3681 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_39332, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000979 DATIHC010000000
VERSION     DATIHC010000979.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 3681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3681
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39332"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..417
                     /locus_tag="VLF16_16305"
     CDS             <1..417
                     /locus_tag="VLF16_16305"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003158254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008818 - cobalamin 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0051073 - adenosylcobinamide-GDP
                     ribazoletransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HSX72497.1"
                     /translation="SGPIAVVVLLLVLLLKFAALVVLLERQAWAGLLLAPWIGRALLP
                     LLFLTTAYVRAGGLGAALAEHLPRERLPLLLALHGLAMLLLGFSAVLALLAAALVFWL
                     LRRAFTARLGGTTGDTAGALLELGECAVLVALALWA"
     gene            884..1297
                     /locus_tag="VLF16_16310"
     CDS             884..1297
                     /locus_tag="VLF16_16310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003159861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HSX72498.1"
                     /translation="MLPTQCLCTKLRRASRGVTRIYDEALADVGLNAAQFGLLRHLQR
                     LDQPSISTLAEAMGLDRSTLGRNLRVVEGMGLVQLGSGADQRSRQVLLSEAGRQVLER
                     GAPLWERAQQALALRLGADKRAELMRLLDDLETID"
     gene            1313..2521
                     /locus_tag="VLF16_16315"
     CDS             1313..2521
                     /locus_tag="VLF16_16315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007927804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSX72499.1"
                     /translation="MNNPWRTAGWLLLGASLILALSLGIRHGFGLFLSPMSGEYGWGR
                     EVFAFAIALQNLIWGLAQPITGAVADRFGARRVIIAGGLLYAAGLALMASADSAWSLS
                     LTAGLLIGIGLSGTSFSVLLGVVGRALPAEKRSIGMGIAAAAGSFGQFAMLPGTLGLI
                     GWLGWSSALIALGLLVALIAPLAWMVRDIPQPAPAGSEQSLGEALREACAHRGFWLLA
                     LGFFVCGFQVVFIGVHLPSYLVDQHLPASVGTTVLALVGLFNVFGTYIAGWLGGRMSK
                     PRLLTGLYLARTVVIVAFVYSPLTEWSAYAFGMAMGLLWLSTVPLTNGTVATLFGVRN
                     LSMLGGIVFLFHQIGSFLGGWLGGYLYDHTGSYEVVWQLSILFGLLAAAINWPVREQP
                     VARLRAAEAV"
     gene            2518..2640
                     /locus_tag="VLF16_16320"
     CDS             2518..2640
                     /locus_tag="VLF16_16320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013971388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72500.1"
                     /translation="MSRGLGSGLAALLFAGLLALAWWGWSRGGLALLQLNMSLC"
     gene            2703..3251
                     /locus_tag="VLF16_16325"
     CDS             2703..3251
                     /locus_tag="VLF16_16325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003120503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HSX72501.1"
                     /translation="MLPRIASLTLLSLFCAPLWAADCPPLLKDQGELQQLRSKERIDL
                     CQRFAGKPLLVVNTASRCGFTPQFKGLETVYQRYKGQGLEVLGVPSDDFKQEADDSQE
                     TAKVCFIDYGVTFAMSEPQAVSGDDAVPLFRELAEQSSAPRWNFYKYVVGRDGKVIAS
                     FSSLTKPDDEDLLAAIEKALAQ"
     gene            complement(3348..>3681)
                     /locus_tag="VLF16_16330"
     CDS             complement(3348..>3681)
                     /locus_tag="VLF16_16330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003133490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="outer membrane protein transport protein"
                     /protein_id="HSX72502.1"
                     /translation="DTWSYAIGASYQLNPQWVLRTGLALDPSPADNEHRSVRIPVGNR
                     KVFSMGAGWSPSKDMTIDVAYTYLRENAAKVNQSGRELAGRDIAPGFSAEYNNSAHGL
                     GLQATYRF"
BASE COUNT          480 a         1222 c         1311 g          668 t
ORIGIN      
        1 agcggcccca tcgcggtggt cgtgctgctg ctggtgctgc tgctcaagtt cgccgcgctg
       61 gtcgtgttgc tcgagcggca agcctgggcc ggtctgttgt tggcgccctg gatcggccgt
      121 gcgttgttac cgctgctgtt cctgaccacc gcctatgtgc gcgccggcgg cctgggcgcg
      181 gcgctggccg agcatctgcc gcgcgagcgc ctgccgctgc tgctggcatt gcacggcctg
      241 gccatgctgc tgctcggctt ttctgccgtg ctggcgttgc tcgctgccgc gctggtgttc
      301 tggctgctgc gccgcgcctt caccgcccgc ctcggtggca ccaccggcga caccgccggc
      361 gccctgctgg aactgggcga gtgcgccgtg ctggtggcat tggcgctgtg ggcgtaatcg
      421 aacgtctcgc ctcggccgcg tccagcgccc ggcggtgcac cgcctccgcc gagtgacacc
      481 ctataaagcc ccgtagggcg gtctcggagc gaagcgacag cccgccaagc gcggcccggg
      541 attacaccgc gccgcctgca atggcgcact gcctccggcg agtgacgccc tacaaaagcc
      601 gtagggcggc ctcggagcgc agcgacagcc cgccagacgt gtccggatac accgcgccgc
      661 ctggcatgat gcactgcctc cggcgagcga aattcctagg ccgaagccga cgcgaattgg
      721 gccacgtccc ggtgggcggc taccgcggcg catggccgat tgatgatggt taaacatcag
      781 gtgcgcacgg cgcaccctac ggtcgtgcga tctgggctgt tccgctcgtt tagatcgcaa
      841 ctgtaactgc ctgctcgcca gaagcgggta tatacctgta tccatgttgc cgacccaatg
      901 cctctgtacc aaattgcgcc gcgccagccg cggtgtgacc cgtatctacg acgaagccct
      961 ggccgatgtc gggctcaatg ccgcgcaatt cgggctgctg cgccatttgc agcggctgga
     1021 ccagccgagc atttccaccc tggccgaggc catgggcctg gaccgcagca ccctcgggcg
     1081 caacctgcgg gtggtggagg gcatggggct ggtgcaattg ggtagcggcg ccgaccagcg
     1141 cagccggcag gtgctgctga gcgaggccgg tcgccaggtg ctggagcggg gcgcgccgct
     1201 gtgggaacgg gcgcagcagg cgctggcgct gcgcctgggc gcggacaagc gggccgagct
     1261 gatgcggttg ctcgacgacc tggaaaccat cgactgaagc ggagacatgc agatgaacaa
     1321 cccctggcgt acggcaggct ggctcctgct gggtgcatcg ctgatcctcg cgctgtcgct
     1381 gggcatccgc cacggcttcg gcctgttcct ctcgcccatg agcggcgaat acggctgggg
     1441 acgtgaagtg ttcgccttcg ccatcgccct gcagaacctg atctggggcc tggcccagcc
     1501 catcaccggc gcggtggccg accgcttcgg cgcccgtcgg gtcatcatcg ctggcgggtt
     1561 gctgtacgcg gccggtctgg cgctgatggc cagcgccgac tcggcctggt cgctgtcgct
     1621 gaccgccggc ctgctgatcg gcatcggcct ctccggtacc tcgttttcgg tgctgctcgg
     1681 cgtggttggc cgggcgctgc cggcggagaa gcgcagcatt ggcatgggta tcgccgcggc
     1741 cgccggctcc ttcggccagt tcgccatgct gcccggcacg ctcgggctga tcggctggct
     1801 gggctggtcg tcggcgttga tcgcgctggg cctgctggtg gccctgatcg cgccgctggc
     1861 gtggatggtg cgcgacattc cgcaaccggc gccggccggc agcgagcaga gcctgggcga
     1921 ggccctgcgc gaggcctgcg cccatcgcgg cttctggctg ctggcgctgg gcttcttcgt
     1981 ctgcggcttt caggtggtgt tcatcggcgt gcatttgccc tcgtacctgg tcgaccagca
     2041 cctgccggcc tcggtgggca ccacggtgct ggcgctggtg gggctgttca acgtgtttgg
     2101 cacctatatc gccggctggc tcggcgggcg catgtccaag ccgcgtctgc tcaccggcct
     2161 gtacttggcg cgcacggtgg tgatcgtcgc gttcgtctac tcgccgctga ccgagtggag
     2221 cgcctacgcc ttcggcatgg ccatggggct gctgtggctg tccacggtgc cgctgaccaa
     2281 tggcacggtg gcgaccctgt tcggcgtgcg caacctgtcg atgctcggcg gcatcgtctt
     2341 cctgttccac cagatcggct cgttcctcgg cggttggctg ggcggctatc tgtacgacca
     2401 taccggcagc tacgaggtgg tctggcagtt gtcgatcctc ttcggtttgc tggcggcggc
     2461 gatcaactgg ccggtgcgcg agcagccggt ggcccgcctg cgggcggcgg aggcggtgtg
     2521 agtcgcggcc ttggctcggg cctggcggcg ctgctgttcg ccggcttgct ggcactggcc
     2581 tggtggggct ggagccgcgg cgggctggcc ctgctgcagc tcaacatgag cctgtgctga
     2641 gcgttgccga ggcgggcgag ggcgagtagc gtggcggcat gactcattcg gagccgcccg
     2701 ccatgttgcc gcgcatcgcc agcctgaccc tgctttccct gttctgcgcc ccgctctggg
     2761 ccgccgattg tccgccgctg ctgaaggacc agggcgagct gcagcagctg cgttccaagg
     2821 agcgcatcga cctgtgccag cgcttcgccg gcaagccgct gctggtggtg aacaccgcca
     2881 gtcgctgcgg cttcaccccg cagttcaagg gcctggagac ggtataccag cgctacaagg
     2941 gccaggggct cgaggtactc ggcgtgcctt ccgacgactt caagcaggag gccgacgact
     3001 cccaggagac cgccaaggtc tgcttcatcg actacggcgt gaccttcgcc atgagcgagc
     3061 cgcaggcggt cagcggcgac gacgcggtgc cgctgttccg cgagctggcc gagcagagca
     3121 gcgctccgcg ctggaatttc tacaagtacg tggtgggccg cgacggcaag gtgatcgcca
     3181 gcttttccag cctgaccaag ccggacgacg aggacctgct ggcggccatc gagaaagcgc
     3241 tggcccagtg agcgcgcacg gcgatctacg aaagccgcga gcgcgccgtg cgcagtgggc
     3301 ataaaaaagc cgggcgaatg cccggctttt ttatgccgcc cgatccgtca gaaacggtag
     3361 gtggcctgca ggcccaggcc gtgggcgctg ttgttgtact cggcgctgaa gcccggggcg
     3421 atatcgcggc cggccaactc gcggcccgac tggttcacct tggcggcgtt ctcgcgcagg
     3481 taggtgtagg ccacgtcgat ggtcatgtcc ttgctcggcg accagcctgc acccatggag
     3541 aacaccttgc ggttgcccac cgggatgcgc acggagcggt gctcgttgtc ggccggcgac
     3601 gggtcgagcg ccaggccggt acgcagcacc cactgcgggt tgagctggta cgaggcaccg
     3661 atggcgtagg accaggtgtc g
//
LOCUS       DATIHC010000980         2166 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_23051, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000980 DATIHC010000000
VERSION     DATIHC010000980.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2166)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2166)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2166
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23051"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..973
                     /gene="fadA"
                     /locus_tag="VLF16_16335"
     CDS             <1..973
                     /gene="fadA"
                     /locus_tag="VLF16_16335"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003988 - acetyl-CoA C-acyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009062 - fatty acid catabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase FadA"
                     /protein_id="HSX72503.1"
                     /translation="GWNIARMASLMTQIPHTSAGQTVSRLCGSSMSALHTAVQAIQTG
                     NGDVFVVGGVEHMGHVGMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREAQD
                     QFGERSHRLAHKATVEGKFKDEIIPMQGYDENGFLKVFDFDETIRPETTVESLAALKP
                     AFNPKGGTVTAGTSSQITDGASCMIVMSAQRAQDLGIQPMAVVRAMAVAGVDPAIMGY
                     GPVPSTQKALKRAGLSMDDIDFVELNEAFAAQALPVLKDLKLLDKMEQKVNLHGGAIA
                     LGHPFGCSGARISGTLLNVMKQNGGTLGVSTMCVGLGQGITTIFERV"
     gene            1034..1288
                     /locus_tag="VLF16_16340"
     CDS             1034..1288
                     /locus_tag="VLF16_16340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012018124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1653 domain-containing protein"
                     /protein_id="HSX72504.1"
                     /translation="MQLQPGLYRHYKGPQYRVFGTARHSETEEWLVVYQALYGDYGLW
                     VRPLEMFCGTVEVDGETVPRFALIEAESALIGQDAARARA"
     gene            1380..>2166
                     /locus_tag="VLF16_16345"
     CDS             1380..>2166
                     /locus_tag="VLF16_16345"
                     /EC_number="5.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase"
                     /protein_id="HSX72505.1"
                     /translation="MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSAS
                     ASKEPAKRGKAAAAEAPALSPKEKAKRQLFTRMGVDPEHGWKAKYEILPGKEKVIEEL
                     RRLAKDADTIYLATDLDREGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQP
                     GELDINRVNAQQARRFLDRVVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREKEIR
                     AFVPEEYWEVHADLGTGKGDKVRFEVARENGEAFKPLNEAQAMA"
BASE COUNT          415 a          698 c          700 g          353 t
ORIGIN      
        1 gggctggaac atcgcgcgca tggcgtcgct gatgacccag atcccgcaca ccagtgccgg
       61 ccagaccgtc agccgcctgt gcggttcgtc catgagcgcc ctgcacaccg ccgtgcaggc
      121 catccagacc ggcaacggcg acgtattcgt cgtcggcggt gtggagcaca tgggccacgt
      181 cggcatgatg catggcgtcg atccgaaccc gcacatgtcc ctgtacgccg ccaaggcgtc
      241 gggcatgatg ggcctgaccg ccgagatgct gggcaagatg cacggcatca gccgtgaagc
      301 ccaggaccag ttcggtgagc gttcccaccg tctggcccac aaggccaccg tcgaaggcaa
      361 gttcaaggat gaaatcatcc cgatgcaggg ctacgacgag aacggcttcc tgaaggtgtt
      421 cgacttcgac gaaaccattc gtccggagac caccgtcgag agcctggccg ccctgaagcc
      481 ggcgttcaac ccgaaaggcg gcaccgtgac cgcgggtact tcctcgcaga tcaccgacgg
      541 cgcctcctgc atgatcgtca tgagcgccca gcgcgcccag gacctgggca tccagccgat
      601 ggccgtggtt cgcgccatgg ccgtggccgg tgtcgatccg gcgatcatgg gctacggtcc
      661 ggtgccgtcc actcagaagg cgctcaagcg tgccggcctg agcatggacg acatcgactt
      721 cgtcgagctc aacgaagcct tcgccgccca ggccctgccg gtgctgaagg acctgaaact
      781 cctcgacaag atggagcaga aggtcaacct gcacggcggc gccatcgccc tgggtcaccc
      841 gttcggctgc tccggtgcgc gtatctccgg taccctgctg aacgtgatga agcagaacgg
      901 cggtactctg ggcgtgtcca ccatgtgcgt gggcctcggc cagggcatca ccaccatctt
      961 cgaacgcgtc taagcgttcg gagatgcgaa gaccggggcc aggtgccccg gtttttgttt
     1021 ttaggagatc agcatgcaac tgcaacccgg gctctaccgt cactacaagg ggccgcagta
     1081 ccgcgtattc ggcactgcga ggcactcgga aaccgaggag tggctggtgg tctaccaggc
     1141 gctgtacggg gattacggcc tgtgggtgcg gccgctggag atgttctgcg gcacggtcga
     1201 ggtggacggc gagacggttc cgcgattcgc cctgatcgag gccgaatcgg cgctgatcgg
     1261 acaggacgcc gcaagggctc gcgcttgacc tgagctcgac ggccactata tatagcggtg
     1321 ccttgatagg ctcccgccgc ttattctctc ttttctagtt ttcaggaatt ctccaatcca
     1381 tgggcaaatc gctggtcatc gtggaatccc cggccaaggc caagaccatc aacaagtacc
     1441 tgggcaacca gtacgtggtg aagtcgagca tcggccacat tcgtgacctg cccaccagcg
     1501 gttccgccag cgccagcaag gagccggcca agcgcggcaa ggccgctgcc gccgaggcgc
     1561 cggcgctgtc gcccaaggaa aaggccaagc gtcaactgtt cacccgcatg ggcgtcgatc
     1621 ccgagcacgg ctggaaggcc aagtacgaga tcctccccgg caaggagaag gtgatcgagg
     1681 agctgcgccg cctggccaag gatgccgaca ccatctatct cgcaaccgac ttggaccgcg
     1741 aaggggaggc catcgcctgg cacctgcgcg aggccatcgg cggcgatgac agccgctaca
     1801 agcgcgtggt gttcaacgag atcaccaaga aggccatcca ggaggccttc tcccagcccg
     1861 gcgagctgga catcaaccgt gtcaacgccc agcaggcgcg gcgcttcctc gaccgcgtag
     1921 tgggctatat ggtctcgccg ctgctgtggg ccaagatcgc ccgcggcctg tccgccggcc
     1981 gtgtacagtc ggtcgcggtg aagctggtgg tggagcgcga gaaggaaatc cgcgccttcg
     2041 tcccggaaga atactgggaa gtgcacgccg atctgggtac cggcaagggc gacaaggtgc
     2101 gcttcgaggt tgcccgcgag aacggcgagg ccttcaagcc gctcaacgag gcccaggcca
     2161 tggcgg
//
LOCUS       DATIHC010000981         1521 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_16301, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000981 DATIHC010000000
VERSION     DATIHC010000981.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1521
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16301"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            205..>1521
                     /locus_tag="VLF16_16350"
     CDS             205..>1521
                     /locus_tag="VLF16_16350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003221942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HSX72506.1"
                     /translation="MLILRGTPALSSFRHGKLLSQLTAKVPAVTGLYAEFAHFAEVTG
                     LLDASEEQVLARLLKYGPSVPVQEPTGQLFLVIPRFGTISPWSSKATDIARNCGLAKI
                     ERLERGIAYYVAGELSDADRQAVAAALHDRMTQLVLGNLEDAAGLFSHAEPKPLTAVD
                     VLGGGRAALEQANVALGLALAEDEIDYLVKSFVELGRNPHDVELMMFAQANSEHCRHK
                     IFNASWDIDGQSQDKSLFGMIKNTYEMHREGVLSAYKDNASVIVGHTAGRFFPNPETR
                     QYGAVQEPVHILMKVETHNHPTAIAPFPGASTGSGGEIRDEGATGRGAKPKAGLTGFT
                     VSNLNIPGFVQPWEKPYGKPERIVTALDIMIEGPLGGAAFNNEFGRPNLGGYFRAYEQ
                     TVDGVRRGFHKPIMSAGGLGSIDADQTEKVLFPAGTLLVQLGGPGMR"
BASE COUNT          261 a          558 c          475 g          227 t
ORIGIN      
        1 gggcaaacat cggcgcagta tacgcaaagc ccaacggctg ccatatctcg acagcactcc
       61 ggggctctgc tagacgcgcc gtttcgcggt cggcccaggg tgccgtcgcg cggcgcttta
      121 ggctagaatg cacggcctca aagaacctgc tcccgggggc ccgtggcagg ttcgaagtac
      181 accccttctc agaggctgtt ctccatgttg atcctgcgcg gcacgcccgc tctttcctct
      241 ttccgtcacg gcaaactgct ttcgcaactg accgccaagg tccccgccgt gaccgggctg
      301 tatgccgagt tcgcgcactt cgccgaggtg accggcctgc tcgacgccag cgaggagcag
      361 gtgctggccc gactgctgaa gtacggcccg agcgtgccgg tgcaggagcc cacgggtcag
      421 ctgttcctgg tgattccgcg cttcggcacc atctcgccct ggtcgagcaa ggccaccgac
      481 atcgcccgca actgtggcct ggccaagatc gagcgcctcg agcgcggcat cgcctactac
      541 gtggccggcg agctgagtga cgccgaccgc caggccgtcg ccgccgcact gcacgaccgc
      601 atgacccagc tggtgctggg caacctggaa gacgccgccg gcctgttcag ccacgccgag
      661 cccaagccgc tgaccgcggt ggacgtgctg ggcggcggcc gcgccgcgct ggaacaggcc
      721 aacgtcgcgc tcggcctggc cctggccgag gacgagatcg actacctggt gaagagcttc
      781 gtcgagctgg gccgcaatcc gcacgacgtc gaactgatga tgttcgccca ggccaactcc
      841 gagcattgcc gccacaagat cttcaatgcc agctgggaca tcgacggcca gagccaggac
      901 aagtccctgt tcggcatgat caagaacacc tacgagatgc accgcgaggg cgtgctgtcc
      961 gcctacaagg acaacgcctc ggttatcgtc ggccacaccg ccggacgttt cttccccaac
     1021 cctgaaaccc gccagtacgg cgcggtgcag gagccggtgc acatcctgat gaaggtggag
     1081 acgcacaacc acccgaccgc catcgccccg ttccccggcg cctccaccgg ctccggcggc
     1141 gagatccgcg acgagggcgc caccggtcgc ggcgccaagc ccaaggccgg cctgaccggc
     1201 ttcaccgtct ccaacctgaa catccccggc ttcgtgcagc cctgggagaa gccctacggc
     1261 aagcccgagc gcatcgtcac cgccctggac atcatgatcg agggcccgct gggcggcgcc
     1321 gcgttcaaca acgagttcgg ccggcccaac ctcggcggct acttccgggc gtacgagcag
     1381 accgtcgacg gcgtgcgccg cggcttccac aagcccatca tgagcgcggg cgggctcggc
     1441 tcgatcgacg ccgaccagac cgagaaggtg ctcttccccg cgggcaccct cctcgtccag
     1501 ctcggcggtc ccgggatgcg g
//
LOCUS       DATIHC010000982         1794 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_16309, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000982 DATIHC010000000
VERSION     DATIHC010000982.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1794)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1794
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16309"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(297..728)
                     /locus_tag="VLF16_16355"
     CDS             complement(297..728)
                     /locus_tag="VLF16_16355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015479283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72507.1"
                     /translation="MPLPRLIPAFLLICALLTGCTPSDPQAALEEAVQRLQDNLEAKR
                     NDEALEQLHPQFSAQQQYDREWARRTMALLFLRHKQVRVIAIGKSSEVDPTYSNKGHT
                     RAEVALTGAEGLIPDSARHYSVTLEWWLEDGEWQLARLDWE"
     gene            813..1784
                     /gene="pip"
                     /locus_tag="VLF16_16360"
     CDS             813..1784
                     /gene="pip"
                     /locus_tag="VLF16_16360"
                     /EC_number="3.4.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003249260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0030163 - protein catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl aminopeptidase"
                     /protein_id="HSX72508.1"
                     /translation="MLTLYPEIKPYARHELAVDEPHVIYLDESGSPDGLPVLFVHGGP
                     GAGCDSASRRYFDPNLYRIVTFDQRGCGRSIPHASLEGNTTWDLVADMERIREHLGID
                     KWLLFGGSWGSTLSLAYAQTHPERVHGLILRGIFLCRPQEFDWFYQEGASRLFPDYWE
                     DYVAPIPQEERGNLVQAFHKRLTGADQIAQMHAAKAWSCWEGRTATLRPNPQVVDRFT
                     EPHRALSIARIESHYFVNNAFLEEDQLLRDMPKIAHLPGIIVHGRYDAICPLDNAWSL
                     HQAWPNSELQIIRDAGHAAAEPGITDALVRAADQMARRLLDLPPEDA"
BASE COUNT          280 a          639 c          552 g          323 t
ORIGIN      
        1 gcgtgctgct gtacctggcg gcgcgacgcg acgaggccga atgcctggat tacttcggcg
       61 aggcctaccg cgcatacatg gggcgtagcc ggatgttcat tccctggctg ttctgagacc
      121 tgtccacgct cttctggctc gcggcctaag gcgtcaaaaa cgccctggat cgcctgctca
      181 tttatctctc ataaactcgc gtgcgagccc agtgcccttc ctcgggcgtt tttgcggggc
      241 cgccgaggcc ttgtctggcg ctaaaccaga agctcgtgaa cagcgcctga accagctcac
      301 tcccagtcca gccgcgccag ctgccactcg ccgtcttcca gccaccactc cagcgtgacg
      361 ctgtaatgcc gggcgctgtc cgggatcagc ccctcggcgc cggtcagggc cacctcggcg
      421 cgggtgtggc ccttgttgct gtaggtgggg tcgacctcac tgctcttgcc gatggcgatc
      481 acccgcacct gcttgtggcg caggaacagc agcgccatgg tgcgccgcgc ccactcgcgg
      541 tcgtactgct gctgcgcgct gaattgcggg tgcagttgct ccagcgcctc atcgttgcgc
      601 ttggcctcca ggttgtcctg caggcgctgc acggcctcct ccagcgcggc ctgcggatcg
      661 ctcggcgtgc agccggtgag cagggcgcag atcagcagaa aagcggggat taatcgcggg
      721 agaggcatgt tcaacgtcct tttcatggtt atgatgcccg gcacggcctc cggccgactc
      781 agggacctta cgcacagact cgggagtgcg ccatgctgac tttgtatccg gagatcaaac
      841 cctacgcccg ccatgagctg gcggtggacg agccgcacgt catctatctg gacgagagcg
      901 gctctccgga cggcctgccg gtgctgttcg tgcacggcgg cccgggcgcc ggctgtgatt
      961 ccgccagccg ccgctacttc gatcccaacc tgtaccgcat cgtcaccttc gatcagcgcg
     1021 gctgcggccg ctccattccg catgccagcc tcgaaggcaa caccacctgg gacctggtgg
     1081 ccgacatgga gcgcatccgc gagcacctgg gcatcgacaa gtggctgctg ttcggcggct
     1141 cctggggttc gaccctgtcc ctggcctacg cccagaccca ccccgagcgc gtccatggcc
     1201 tgatcctgcg tggcatcttc ctctgccgcc cgcaggagtt cgactggttc tatcaggaag
     1261 gcgcgagccg gctgttcccc gactactggg aagactatgt ggcgccgatt ccgcaggagg
     1321 aacgcggcaa tctggtccag gccttccaca agcgcctcac cggcgccgac cagatcgccc
     1381 agatgcatgc cgccaaggcc tggtcctgct gggagggacg caccgccacg ctgcggccca
     1441 acccgcaggt ggtcgaccgc ttcaccgagc cgcaccgcgc cctgtccatc gcccgcatcg
     1501 agtcgcacta tttcgtcaac aacgccttcc tcgaggaaga ccagttgctg cgcgacatgc
     1561 cgaagatcgc ccacctgccg ggcatcatcg tgcacggtcg ctacgatgcc atctgcccgc
     1621 tggacaacgc ctggtcgctg caccaggcgt ggcccaacag cgagctgcag atcatccgcg
     1681 acgccggcca tgccgccgcc gagccgggca tcaccgatgc cctggtgcgc gccgccgacc
     1741 agatggcccg gcgcttgctc gatctgccgc cggaagacgc gtgaagctgc tgat
//
LOCUS       DATIHC010000983         5548 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_27983, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000983 DATIHC010000000
VERSION     DATIHC010000983.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5548
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27983"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(156..3035)
                     /locus_tag="VLF16_16365"
     CDS             complement(156..3035)
                     /locus_tag="VLF16_16365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HSX72509.1"
                     /translation="MHTDTTRENPQAVAPQAAESSQDLAATAPGQLRVIKRNGTVVPY
                     TDDKITVAITKAFLAVEGGNAAASSRIHETVARLTEQVTATFKRRMPSGGTIHIEEIQ
                     DQVELSLMRAGEQKVARDYVIYREARANERKSSSADVAQPHPSIRVTKADGSVQPLDM
                     GRLQTIIREACEGLAEVDGSLIEAETLKNLYDGVAEKDVNTALVMTARTLVEREPNYS
                     YVTARLLMDNIRAEALSFLDIASSATHHEMADLYAKALPAYVEKGSEFELIDSKLKQY
                     DLEKLGRAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAIEEPQ
                     KEERAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYQAIHDNAM
                     LSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA
                     YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGQWTLFSPSEVP
                     DLHDLTGKAFEERYEYYEALTQYGKIKVFKTIAAKDLWRKMLSMLFETGHPWLTFKDP
                     CNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINMVNHIVDGKLDVEKLGRT
                     VKTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGLMGFQDALYLQHIAYGSDAAIEF
                     ADKSMEAISYYAIQASCDLADERGSYSTFDGSLWSKGILPLDSQQILIEARGQKYIDV
                     DLSESLDWAPIRERVKKGIRNSNIMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSG
                     EFTVINPYLVRDLKNRGLWDSVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKW
                     IVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYYLRALAATSTEK
                     STINTGKLNAVSSGAIDEGNFAAPAGPAPVPKACSIDNPDCEACQ"
     gene            3678..4397
                     /locus_tag="VLF16_16370"
     CDS             3678..4397
                     /locus_tag="VLF16_16370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011062738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSX72510.1"
                     /translation="MEQEAWQILIVEDDQRLAELTQEYLQSNGLQVAIESDGALAAAR
                     ILKEQPDLVVLDLMLPGEDGLSICRKVRGQYPGPILMLTARTDDMDEVLGLEMGADDY
                     VCKPVRPRVLLARIRALLRRSEGGEVPNESQRRLEFGPLVIDSALREAWLRDASIELT
                     SAEFDLLWLLAANAGRILSREEIFTALRGIEYDGQDRSIDVRISRIRPKIGDDPMHPR
                     LIKTVRSKGYLFVAEAASALQ"
     gene            4394..>5548
                     /locus_tag="VLF16_16375"
     CDS             4394..>5548
                     /locus_tag="VLF16_16375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HSX72511.1"
                     /translation="MNSIFLRIYGGIIAALVLVALLGVGALQLTNEVRSDQYREQLAR
                     GTFRLMADNLQPMEEVDRRRALATWSRLLGVSLELQDLAAGRLDGRTQGRLLRGQVLV
                     EQTGPHAAQVYALVSAEERLVLTTGVEQISEQLARATVFLLMDELVRYPIVEQPKRLA
                     ALKEEKRFGFDLRLVTLEKVDLDEDQQRRVDEGDTVLALGKGGDSIRVIAGMVGTPWV
                     LEVGPIYQMNPYPTESLVLIGVLGLTLTGLILYLLVRRLERRLQALENVAVKLASGRL
                     DARAPTQSADSVGRLAATFNAMAEQLQRLLNVQREMVRAVSHELRTPVARLRFGLEMI
                     GDADSDEARHKYMEGMDGDIQELDKLVDEMLVYARLEQGSPELIYQRVDLR"
BASE COUNT          865 a         1643 c         1960 g         1080 t
ORIGIN      
        1 catccaccct acaaaatcag ctcggtgtga gcgcgaaact gagcgagtga gcgctaggcg
       61 tcgggttgct ttggccccgg agcgtactgt tgtacgtgag gagccgaagc ggcccggcaa
      121 caacgcgggc gccgctcaga ttcgcgcgcc ttcccttatt ggcaagcttc gcagtcgggg
      181 ttgtcgatgg agcacgcctt cggcactggc gccggaccgg ccggtgcggc gaagttgccc
      241 tcgtcgatcg cgccactgga cacggcgttg agcttgccgg tgttgatggt ggacttctcg
      301 gtgctggtgg cggccagggc acggaggtag taggtggttt tcaggccacg gaaccaggcc
      361 atgcggtagg tcacgtccag cttcttgccc gaggcgccgg cgatgtacag gttcagcgac
      421 tgggcctggt cgatccactt ctggcggcgg ctggcggcat cgacgatcca cttggtttcc
      481 acttcgaacg cggtggcgta caggtccttg aggtcctgcg gaatgcgctc gatctgctgc
      541 acggagccgt cgtagtactt caggtcgttg accatgacgc tgtcccacag gccgcggttc
      601 ttcaggtcgc gcaccaggta ggggttgatc acggtgaact cgccggagag gttcgatttc
      661 acgtacaggt tctggtaggt cggctcgatc gactgcgaca cgccaatgat gttggagatg
      721 gtcgcggtcg gcgcgatggc catgatgttc gagttgcgga tgcctttctt cacgcgctcg
      781 cggatcgggg cccagtccag cgactcggac aggtcgacgt cgatgtactt ctggccacgg
      841 gcctcgatca ggatctgctg ggagtccagc ggcaggatgc ccttggacca cagcgagccg
      901 tcgaaggtgg agtagctgcc gcgctcgtcg gccaggtcac aggaagcctg gatcgcgtag
      961 tagctgatcg cttccatgga cttgtcggcg aactcaatgg ccgcgtcgga gccgtaggcg
     1021 atgtgctgca ggtacagggc gtcctggaag cccatcaggc cgaggccgac cggacggtgc
     1081 ttgaggttgg agttgcgcgc ctgcggtacc gagtagtagt tgatgtcgat gacgttatcg
     1141 agcatgcgca cggcggtctt cacggtgcgg ccgagcttct cgacgtccag cttgccgtcg
     1201 acgatgtggt tgaccatgtt gatcgagccc aggttgcaga ccgcgatctc gtccttgttg
     1261 gtgttcaggg tgatctcggt gcacaggttg gagctgtgga ccacgcccac gtgctgctgc
     1321 gggctgcgca ggttgcacgg gtccttgaag gtcagccacg ggtggccggt ttcgaacagc
     1381 atggacagca tcttgcgcca caggtctttg gcggcgatgg tcttgaagac cttgatcttg
     1441 ccgtactggg tcagggcttc gtagtactcg tagcgctctt cgaaggcctt gccggtcagg
     1501 tcgtgcaggt ccggtacttc ggacggggag aacagggtcc actggccgtc gtcgaacacg
     1561 cgcttcatga acaggtccgg aatccagttc gcggtgttca tgtcgtgggt gcggcggcgg
     1621 tcgtcaccgg tgttcttgcg cagctcgagg aattcctcga tgtccaggtg ccaggtttcc
     1681 aggtaggcgc agacggcgcc cttgcgcttg ccgccctggt tcacggccac ggcggtatcg
     1741 ttgaccactt tcaggaaggg cacgacgccc tgggatttgc cgttggtgcc cttgatgtag
     1801 gagcccagcg cgcgcaccgg ggtccagtcg ttgcccaggc cgccggcgaa tttggacagc
     1861 atggcgttgt cgtggatggc ctggtagatg cccgacaggt cgtctggcac ggtggtcagg
     1921 tagcacgagg acagctgcgg acgtagggtg ccggcgttga acagggtcgg ggttgacgcc
     1981 atgtagtcga acgaggacag caggttgtag aactcgatgg cgcgctcttc cttctgcggc
     2041 tcttcgatgg ccaggcccat ggccacgcgc atgaagaaca cctgcggcag ttcgaagcgg
     2101 atgccgtcct tgtggatgaa gtagcggtcg tacagggtct gcaggcccag gtaggtgaac
     2161 tgctggtcgc gctcgtggtt gatggcgcgg cccagtttct ccaggtcgta ctgcttgagc
     2221 ttggagtcga tcagctcgaa ctcgctgcct ttttccacgt acgccggcag ggccttggcg
     2281 tagaggtcgg ccatctcgtg gtgagtggcg ctgctggcga tgtcgaggaa gctcagggcc
     2341 tcggcgcgga tgttgtccat cagcaggcgg gcggtgacgt aggagtagtt cggctcgcgc
     2401 tcgaccaggg tacgggcggt catcaccaat gcggtgttga cgtccttctc ggccacgccg
     2461 tcgtacaggt tcttcagggt ctcggcttcg atcagcgagc cgtcgacttc ggccaggcct
     2521 tcgcaggcct cgcggatgat ggtctgcagg cggcccatgt ccagcggctg cacgctgccg
     2581 tcggccttgg tgacgcggat gctcgggtgc ggctgggcca cgtcggcgct gctgctcttg
     2641 cgctcgttgg cgcgggcttc gcggtagatc acgtagtcgc gggcgacctt ctgctcgccg
     2701 gcgcgcatca gggacagttc gacctggtcc tggatctctt cgatgtggat ggtgccgccg
     2761 gacggcatgc ggcgcttgaa ggtggcggtg acctgctcgg tcaggcgcgc gacggtttca
     2821 tggatacgcg acgaggcggc ggcattgccg ccttccactg cgaggaacgc cttggtgatg
     2881 gcgacggtga tcttgtcgtc ggtgtagggg acgacggtac cgttgcgctt gatcacacgc
     2941 agctggcccg gggcggtggc ggccagatcc tgactggatt cggctgcctg cggcgccacg
     3001 gcctgcgggt tctcgcgagt ggtatcggta tgcatgagtt tctccacttg taattggttt
     3061 ggacaccggg ggtgccttgt gttcattcca ttgcaaaacg tcgcgatatc cggcggtccg
     3121 gccagacatc gggaaacggc agtacagggc aggctggggc cgtcctggct gcggaagacg
     3181 cttgacacga ccacaacctg tagtggtcga gatccgcgac ttcgcggtcg atctgtgaat
     3241 gcaggggaag ggtgtcgcgc ggtccgtgct gtcttcagtc gcggcggtgg cggctgagct
     3301 gaaatgctaa cggtagcgcg tggatcgggc ccctctgcat tctttctttt tagtgtccct
     3361 ggcctcgggt aacccactac atgttggggt gaggcgcgat gggggtacaa gataatgcgc
     3421 tatccgggcc tttgcaaggg acgcgacgag gctgtttctg tggataactt gtgggtgaat
     3481 tgtgggtctt ttcaccgcaa cgcggcgcag cccgcgaacc gcctggctcc taccgttcgt
     3541 cgaccctgac gagggcttta gatcgcgtgt gatgccgcga cgctaacaca atatgtagtg
     3601 tttctggcat gcgctgtgct aaccggtttc ggttgttaca atgccgctac ctatggcgct
     3661 tccgctggag agaagtcgtg gaacaagagg cctggcagat cctgatcgtc gaggacgatc
     3721 agcggttggc ggagctgacc caggagtact tgcagagcaa tggcctgcag gtggcaatcg
     3781 aatcggatgg cgccctcgcc gcggcgcgta ttctcaagga gcagccggac ctggtggtgc
     3841 tggatctgat gctgccgggc gaggacggtc tctccatctg ccgcaaggtg cgcggtcagt
     3901 acccgggccc gatcctgatg ctcaccgcgc gcaccgacga catggacgag gtgctgggcc
     3961 tggagatggg agccgatgac tacgtgtgca aaccagtgcg cccgcgcgtg ctgctggcgc
     4021 gcattcgtgc cctgttgcgg cgcagcgagg gcggcgaggt gccgaacgag agccagcgcc
     4081 gcctggagtt cggccccctg gtgatcgaca gcgccctgcg cgaggcctgg ctgcgcgatg
     4141 cgagcatcga gctgaccagc gccgagttcg acctgctctg gctgctggcg gccaacgccg
     4201 gacgcatcct gtcccgcgag gagatcttca ccgccctgcg cggcatcgaa tacgacggcc
     4261 aggaccgctc catcgacgtg cgcatctcgc gcatccgccc gaagatcggt gacgacccga
     4321 tgcacccgcg cctgatcaag acggtgcgca gcaagggcta cctgttcgtc gccgaggccg
     4381 ccagcgccct gcaatgaaca gcatcttcct gcgcatctac ggcggcatca tcgccgccct
     4441 ggtgttggtc gcactgctcg gcgtcggcgc cctgcagctg accaacgagg tgcgcagcga
     4501 ccagtaccgc gaacaactgg cgcgcggcac cttccgtctg atggcggaca acctgcagcc
     4561 gatggaggag gtggaccggc gccgcgccct ggccacctgg agccgcctgc tcggggtgtc
     4621 gctggagctg caggacctgg ccgccggcag gctggacggc cgcacccagg gccgcctgct
     4681 gcgtggccag gtgctggtcg agcagactgg cccgcacgcg gcgcaggtct acgcgctggt
     4741 cagcgccgag gagcggctgg tgctgaccac aggagtggag cagatcagcg agcagctggc
     4801 acgcgccacc gtgtttctgc tgatggacga gctggtgcgc taccccatcg tcgagcagcc
     4861 caagcggctg gcggcgctca aggaggagaa gcggttcggt ttcgacctgc gcctggtcac
     4921 gctggagaag gtcgacctgg acgaggacca gcagcgccgg gtggatgagg gcgacaccgt
     4981 gctggccctg ggcaagggcg gcgactcgat ccgggtgatc gccggcatgg tcggcacgcc
     5041 ctgggtgctg gaggtcggcc cgatctacca gatgaacccc tatcccaccg agtcgctggt
     5101 gctgatcggc gtgctcgggc tgacgctcac cgggctcatc ctttatctgc tggtgcgccg
     5161 cctggagcgt cgcctgcagg cgctggagaa cgtcgccgtc aaactggcca gcggccgcct
     5221 ggatgcccgc gcgcccaccc agagcgccga ctcggtgggg cgcctggccg ccaccttcaa
     5281 tgccatggcc gagcagctgc agcgcctgct caacgtgcag cgcgagatgg tccgcgcggt
     5341 gtcccacgag ctgcgcacgc cggtggcgcg cctgcgcttc ggcctggaga tgatcggcga
     5401 tgccgacagc gacgaggcgc ggcacaagta catggaaggc atggacggcg acatccagga
     5461 gctcgacaag ctggtcgacg agatgctggt ctacgcccgt ctggagcagg gctcgccgga
     5521 gctgatctac cagcgggtgg acctgcgc
//
LOCUS       DATIHC010000984         1797 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_39357, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000984 DATIHC010000000
VERSION     DATIHC010000984.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1797)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1797)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1797
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39357"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..877
                     /locus_tag="VLF16_16380"
     CDS             <1..877
                     /locus_tag="VLF16_16380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HSX72512.1"
                     /translation="CNNVYGHLDPKDEQAWQGLQSYYLNCVRDVDQSIEQVLLALESS
                     GLADDTIVILTADHGEMAGAHQLRQKGPHMYKENTRVNFIVRHPDVRQGFTSEALGST
                     VDIVPTVLELAGLAPEAQAERYPRLAGVSLAESLGGASKRSERDRRGHLYDYGVVMYL
                     DPEFTEAVMRDHDQVTPWSIIQESLAQMQLGPSLDNRALFRGLHDGRYKFARYFAAAD
                     HHTPTDFATLTARDDLELYDTWSDPDELNNLAERPDAQRALIEPLNARLNQLLAQEVG
                     ADDGREHPGPGFLYH"
     gene            892..1125
                     /locus_tag="VLF16_16385"
     CDS             892..1125
                     /locus_tag="VLF16_16385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1145 domain-containing protein"
                     /protein_id="HSX72513.1"
                     /translation="MLKFAKAALLLFWLLALANLVWPFAGAYLGWIALALLLVHGLEI
                     ALLHRRLSRRPQSWRERLLVLLFGVLHLRGMAA"
     gene            1202..1360
                     /locus_tag="VLF16_16390"
     CDS             1202..1360
                     /locus_tag="VLF16_16390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YqaE/Pmp3 family membrane protein"
                     /protein_id="HSX72514.1"
                     /translation="MDLVRILIAILLPPLGVFLQVGFGGAFWLNILLTLLGYIPGIVH
                     AVYIIAKR"
     gene            complement(1410..1486)
                     /locus_tag="VLF16_16395"
     tRNA            complement(1410..1486)
                     /locus_tag="VLF16_16395"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1450..1452),aa:Ile,seq:cat)
     gene            complement(1503..>1797)
                     /locus_tag="VLF16_16400"
     CDS             complement(1503..>1797)
                     /locus_tag="VLF16_16400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSX72515.1"
                     /translation="LKRLPLDILKIDKSFVQGLPGDAEDAAITRAIIALGRGLQMTVI
                     AEGVETKAQEIFLTNEGCQQIQGYVISRPLSAESFAAHFLGPLPIGSAEKAPL"
BASE COUNT          308 a          625 c          572 g          292 t
ORIGIN      
        1 gtgcaacaac gtctacggcc acctcgaccc caaggacgag caggcctggc agggcctgca
       61 gagctactac ctgaactgcg tgcgcgacgt cgaccagtcc atcgagcagg tgctgctggc
      121 gctggaaagc agcggcctgg ccgacgacac catcgtcatc ctcaccgccg accacggcga
      181 gatggccggc gcccaccagc tgcgccagaa gggcccgcac atgtacaagg agaacacccg
      241 ggtcaacttc atcgtccgtc acccggacgt gcgccagggg ttcaccagcg aggcgctggg
      301 ctcgacggtg gacatcgtgc ccaccgtgct ggagctggcc gggctggcgc cagaggccca
      361 ggccgagcgt tacccgcggc tggccggcgt cagcctggcg gaaagcctcg gcggggcgag
      421 caagcgctcc gagcgcgacc gccgcggcca tctgtacgac tacggcgtgg tcatgtacct
      481 cgacccggaa ttcaccgagg cggtgatgcg cgaccacgat caggtcacgc cctggtcgat
      541 catccaggaa tcgctggcgc agatgcagct cggcccctcg ctggacaacc gcgcgctgtt
      601 ccgcggtctg cacgacggcc gctacaagtt cgcccgctac ttcgccgccg ccgaccacca
      661 tacgccgacc gacttcgcca ccctgacggc ccgcgacgac ctcgagctgt acgacacctg
      721 gagcgacccc gacgagctga acaacctcgc cgagcgtccc gacgcccagc gcgcgctgat
      781 cgaaccgctg aacgcacggc tcaaccagct gctggcacag gaggtgggcg ccgacgacgg
      841 ccgcgagcat cccggccccg gcttcctcta tcactgaaca gggagaatcc catgctgaag
      901 ttcgccaagg cggcgctgct gctgttctgg ttgctggcgc tcgccaacct cgtctggccg
      961 ttcgccggcg cctacctggg ctggatcgcg ctggccctgc tgctggtgca cgggctggag
     1021 atcgccctgc tgcaccgccg cctcagccgc cggccgcaat cgtggcgcga gcgcctgctg
     1081 gtgctgctgt tcggcgtgct gcacctgcgc ggcatggccg cctaggaggg catttcagcg
     1141 gaaccgcaac ggcgcggcga gggtcgatga aggacagact tattcctcaa ggagtaccgc
     1201 catggacctc gtccgcatcc tcatcgccat cctcctgcca cccctcggcg tcttcctcca
     1261 ggtcggcttc ggcggggcat tctggctcaa catcctgctg accctgctcg gctacatccc
     1321 gggcatcgtc cacgcggtgt acatcatcgc taagcgctga acatatccgg cgcaaacgaa
     1381 aaagccgcgc aattgcgcgg ctttttattt ggtgggccca cacggacttg aaccgtggac
     1441 caacggatta tgagtccgct gctctaacca actgagctat aggccctcag aagagcggcg
     1501 gattatagcg gcgccttttc cgcgctgcca atcggaagcg ggccgaggaa atgggcggcg
     1561 aaggactcgg ccgagagcgg ccggctgatc acgtagccct ggatctgctg gcagccttcg
     1621 ttggtcagga agatctcctg ggccttggtc tcgacgccct cggcgatcac cgtcatctgc
     1681 aggccgcggc cgagggcgat gatggcgcgg gtgatcgcgg cgtcttccgc gtcccccggc
     1741 aagccttgga cgaaggactt gtcgattttc aggatgtcca gcggcagacg tttgagg
//
LOCUS       DATIHC010000985         2667 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_39371, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000985 DATIHC010000000
VERSION     DATIHC010000985.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2667
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39371"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1229
                     /gene="tilS"
                     /locus_tag="VLF16_16405"
     CDS             <1..1229
                     /gene="tilS"
                     /locus_tag="VLF16_16405"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017703369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HSX72516.1"
                     /translation="STALLHLLVRLREREALPPLRAVHVHHGLQAAADAWPAHCQALC
                     DRLGVPLHIERVQVAPGASLERAAREARYTAFERRLGEGELLLTGQHRDDQAETLLFR
                     LLRGAGVRGLAGMPASRPLGRGHLVRPLVAASRVELETYVRQQGLTWVEDPSNANTGL
                     ARNFLRREVLPALTRHWPQAGQSLARTALHMREAEGLLGELARLDLAAAADDDTFAWL
                     GLPSLGLKPVLELSDARQRNLLRHWLAPLTRMPDSERWAGWCDLRDAALDAAPRWQLE
                     GGELRRADGRLWWLSGAWLAQPVAPSGWDDPRQPLRLPGNGEARLQGGAPDGPLSLRY
                     RQGGETMTIPGRGRRDLKRLLNERAVPGFVRGRLPLLYRGDELLAVANLPGLDGSQSG
                     KWRLDWCPPTNAQGLS"
     gene            1387..>2667
                     /locus_tag="VLF16_16410"
     CDS             1387..>2667
                     /locus_tag="VLF16_16410"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_252327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HSX72517.1"
                     /translation="MTRYIFVTGGVVSSLGKGIASASLAAILEARGLKVTMLKLDPYI
                     NVDPGTMSPFQHGEVFVTQDGAETDLDLGHYERFIRTTMTQDNNFTTGRVYEHVLRKE
                     RRGDYLGATIQVIPHITDEIKRRVIKGAGDADVAMVEIGGTVGDIESQPFLEAARQLR
                     VELGAKRAMFMHLTLVPYIATAGETKTKPTQHSVKELRSIGVQPDVLVCRSDHEIDLA
                     SRRKIALFTNVEERAVIALEDVDTIYRIPSVLHAQGVDDIVVERFGLQCNPADLSEWD
                     RVVDAKLNPEREVTIAMVGKYMELLDAYKSLIEAMGHAGIQHRTKVNLRYIDSEEIEN
                     EGTAKLEGVDAILVPGGFGLRGVEGKIKTVQYARENKIPYLGICLGMQVAVIEYARNV
                     LGWSDANSTEFDAKSGHPVVGLITEWQDATGATEI"
BASE COUNT          430 a          895 c          901 g          441 t
ORIGIN      
        1 attcgactgc gctgctgcac ttgctggtgc gtttgcgcga gcgcgaggca ctgccgccgc
       61 tccgcgccgt tcacgttcat cacggcctgc aggccgcggc tgatgcctgg cccgcccact
      121 gccaggccct gtgcgaccgg ctcggcgtac cgctgcacat cgagcgggtg caggtggccc
      181 caggcgccag cctggagcgt gcggcgcggg aggcgcgcta tacggcgttc gagcgtcgat
      241 tgggggaggg cgagctttta ctgaccggcc agcatcgcga cgatcaggcg gaaacgctgc
      301 tgttccgcct gctgcgcggt gccggcgtgc gaggcctggc gggaatgccg gcgagtcgtc
      361 ctcttgggcg tggccatctg gtacgcccgc tggtggcggc gtcccgcgtc gaattggaga
      421 cctacgtccg ccagcagggg ctgacctggg tggaagaccc ctccaacgcc aataccggcc
      481 ttgcccgcaa cttcctgcgg cgcgaggtgt tacccgcgct gacccggcat tggccgcagg
      541 cgggccagag cctggcgcgc accgccctgc acatgcgcga agccgaaggg ctgctcggcg
      601 agttggcgcg gctcgacctg gcggcggctg ccgatgacga caccttcgct tggctgggcc
      661 tgccgagcct gggcctgaag cctgtgctcg agctgtccga cgcccgccag cgcaatctgc
      721 tgcgccattg gctggcccct ctgacgcgca tgcccgacag cgagcgctgg gccggctggt
      781 gcgacctgcg cgatgccgcg ctcgacgccg cgccgcgctg gcaattggag ggcggcgagt
      841 tgaggcgtgc cgatgggcga ctgtggtggc tctccggcgc ctggctggca caaccggtgg
      901 cgccttcggg ttgggacgat ccgcggcagc cgctgcgcct gccgggtaat ggcgaggcca
      961 ggttgcaggg cggggcgccg gacggtccct tgagcctgcg ctatcgccag ggcggcgaga
     1021 cgatgacgat accgggtcgg gggcgtcgcg acctcaagcg gctgctcaac gagcgcgcag
     1081 tgccgggctt cgtccgcggg cgtctgccgc tgctctatcg gggcgacgag ctgctggccg
     1141 tcgccaatct gccggggctc gacggttcgc agagcggaaa atggcggctg gactggtgcc
     1201 cgccgaccaa cgcgcaaggt ttgagctgat gaggcctttc gagtagacta cgctcccgtc
     1261 ttatcactgc ttctgtgggc tccttcggaa cccgcagcgg cttgctttat tcaggttggc
     1321 caaggccggc ctgcgctctt accccggcgg acccgaccgc ttgaacacag acttctagga
     1381 cttttcatga cgcgctacat cttcgtcacg ggtggtgttg tttcttcatt ggggaaaggc
     1441 atcgcctcgg cttccttggc ggccatcctg gaggcgcggg gcctgaaggt cacgatgctc
     1501 aagctggacc cctacatcaa cgtcgatccg ggcaccatga gcccgttcca gcacggtgag
     1561 gtgttcgtca cccaagatgg cgccgagacc gacctcgacc tgggccacta cgagcggttc
     1621 atccgcacca ccatgaccca ggacaacaac ttcaccaccg gccgtgtcta cgaacacgtg
     1681 ctgcgcaagg agcgccgtgg tgactacctg ggcgccacca tccaggtgat cccgcacatc
     1741 accgacgaga tcaagcgccg cgtcatcaag ggcgccggcg acgccgacgt ggcgatggtc
     1801 gagatcggcg gcaccgtggg cgatatcgag tcccagccgt ttctcgaagc ggcccgtcag
     1861 ctgcgcgtcg aactcggcgc caagcgcgcc atgttcatgc acctgaccct ggtgccgtac
     1921 atcgctaccg ccggcgagac caagaccaag ccgacccagc actcggtcaa ggaactgcgt
     1981 tccatcggcg tgcagccgga cgtgctggta tgccgctccg atcatgagat cgacctggcc
     2041 tcgcgccgca agatcgcgct gttcaccaac gtggaagagc gcgcggtgat cgccctggaa
     2101 gacgtcgaca ccatctatcg cattccttcg gtgctgcacg cccagggtgt ggacgacatc
     2161 gtcgtcgagc gcttcggcct gcagtgcaac ccggccgatc tgtccgagtg ggaccgcgtg
     2221 gtggacgcca agctcaaccc cgagcgcgaa gtcaccatcg ccatggtcgg caagtacatg
     2281 gagctgctcg acgcctacaa gtcgctgatc gaggccatgg gccacgccgg catccagcac
     2341 cgcaccaagg tcaatctgcg ctacatcgac tccgaggaga tcgagaacga gggcaccgcc
     2401 aaactggagg gcgtcgacgc catcctggtg cccggcggct tcggcctgcg tggcgtggaa
     2461 ggcaagatca agaccgtgca gtacgcccgc gagaacaaga tcccctacct gggcatctgc
     2521 ctgggcatgc aggtggcggt gatcgaatat gcccgcaatg tgctgggctg gagcgacgcc
     2581 aactccaccg aattcgacgc caagagcggc catccggtgg tcggcctgat caccgagtgg
     2641 caggacgcga ccggcgccac cgagatc
//
LOCUS       DATIHC010000986         2326 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_25615, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000986 DATIHC010000000
VERSION     DATIHC010000986.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2326
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25615"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            128..>2326
                     /locus_tag="VLF16_16415"
     CDS             128..>2326
                     /locus_tag="VLF16_16415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_251961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS-domain containing protein"
                     /protein_id="HSX72518.1"
                     /translation="MSLSGGLIAFVALVYMAILFAIAFYGDRRRTPLKPRTRAWVYSL
                     SLAVYCTSWTFFGAVGQAAGELWSFLPIYLGPMIVLLFAPWVVEKMVAISKQENITSI
                     ADFIAARYGKSQSLAVVVALICLVGVLPYIALQLKGIVLGVNLLVGTTPSPTRGQDTA
                     LIVSLILALFTVLFGTRSLDVTEHHRGMVLAIAFESLVKLLAFLAVGAFVTWGLFGGF
                     GDLFQRASQAPALEDFWSQTVSWPAMLVQTGLAMTAIICLPRQFHVSVVENIEPRDLR
                     LARWVFPAYLLLAAAFVVPIALAGQLILPQGVQPDSFVINLPLAEAHPALALLAFIGG
                     ASAATGMVIVEAVALSTMVSNDMLLPALLRRQSAERPFEAFRHWMLSARRVSIVVILL
                     LAYVCYRLLGTNASLATIGQLSFAAIGQLAPAMFGALVWKQANRRGVFAGLAAGCALW
                     FYTLVLPLVAGGLRWSLDSFPLLPELLYYPVGFEIDPLTRGVVLSLAGNWLLFALVSW
                     FSRTRVSEHWQAGRFIGLDTGAKSGSRNLLAVQVADLMALAARFVGEERARQSFVRFS
                     YQQDKPFNPSQNADSDWIAHTERLLAGVLGASSTRAVVRAAIEGREMQVEDVVRIVDE
                     ASEVLQFNRALLQGAIENITQGISVVDQNLRLVAWNHRYLELFEYPEGLIGVGRPIAD
                     IIRYNAERGLCGPGDVEEHVAKRLFWMRQGKAHTSERLFPNGRVIELIGNP"
BASE COUNT          301 a          844 c          764 g          417 t
ORIGIN      
        1 ctatcagggg gaccgccgcc gctcaagccg gttgcgacca tggtcggcct gacgaagcgg
       61 gcgccgcgtg cgagactaaa tccctagcca atggtcctgc tgaccatgcc ccacacgcgg
      121 agttcgcatg tcgctgtccg gcggattgat cgccttcgtc gccctggtct acatggccat
      181 cctgttcgcc atcgccttct atggcgatcg ccgccgcacg ccgctcaagc cgcgcacccg
      241 cgcctgggtc tacagcctgt cgctggcggt gtactgcacc agctggacgt tcttcggcgc
      301 ggtcggccag gccgccggcg agctgtggtc gttcctgccc atctatctgg gcccgatgat
      361 cgtcctgctg ttcgcgccct gggtggtgga gaagatggtg gcgatcagca agcaggagaa
      421 catcacctcc atcgccgact tcatcgccgc ccgctacggc aagtcgcaga gcctggcggt
      481 ggtggtcgcg ctgatctgcc tggtcggcgt gctgccctac atcgccctgc agctcaaggg
      541 catcgtgctc ggcgtcaacc tgctggtcgg caccacgccc agccccaccc gcggccagga
      601 cacggcgctg atcgtgtcgc tgatcctcgc cctgttcacc gtattgttcg gcacccgcag
      661 cctggacgtc accgagcatc accgcggcat ggtgctggcc atcgccttcg aatcgctggt
      721 caagctgctg gccttcctcg ccgtcggcgc cttcgtcacc tggggcctgt tcggcggctt
      781 cggcgacctg ttccagcgcg ccagccaggc gcctgccctc gaggacttct ggtcgcagac
      841 cgtgagctgg ccggccatgc tggtgcagac cggcctggcc atgaccgcca tcatctgcct
      901 gccgcggcag ttccacgtca gcgtggtgga gaacatcgaa ccgcgggacc tgcgcctggc
      961 gcgctgggtg ttccccgcct acctgctgct ggccgcggcc ttcgtggtgc ccatcgccct
     1021 ggccggccag ctgatcctgc cgcagggcgt gcagccggac tccttcgtca tcaacctgcc
     1081 gctggccgag gcgcatccgg cgctggccct gctggccttc atcggcggcg cctcggcggc
     1141 gaccggcatg gtgatcgtcg aggcggtggc gctgtcgacc atggtctcca acgacatgct
     1201 gctgccggcc ctgctgcgcc ggcagagcgc cgagcggccg ttcgaggcct tccgccactg
     1261 gatgctcagc gcgcggcgcg tcagcatcgt ggtgatcctg ctgctggcct acgtttgcta
     1321 ccgcctgctg ggcaccaacg ccagcctcgc caccatcggc cagctgtcgt tcgccgccat
     1381 cggccagttg gcgccggcca tgttcggcgc gctggtgtgg aagcaggcca accgccgcgg
     1441 cgtgttcgcc ggcctagccg ccggctgcgc cctgtggttc tacaccctgg tgctgccact
     1501 ggtggccggc ggcctgcgct ggtcgctgga cagctttccg ctgctgccgg agctgctcta
     1561 ttacccggtc ggtttcgaga tcgacccgct gacccgcggc gtggtgctgt cgctggccgg
     1621 caactggctg ctgttcgccc tggtctcctg gttctcgcgc acccgcgtct ccgagcactg
     1681 gcaggccggt cgcttcatcg gcctggacac cggcgccaag tccggcagcc gcaacctgct
     1741 ggccgtgcag gtggccgatc tgatggccct ggccgcgcgc ttcgtcggcg aggagcgggc
     1801 gcggcagagc ttcgtgcgct tctcctacca gcaggacaag cccttcaacc ccagccagaa
     1861 cgccgacagc gactggatcg cccacaccga gcgcctgctg gccggcgtgc tcggcgcctc
     1921 ttcgacccgc gccgtggtgc gcgcggccat cgagggtcgg gagatgcagg tcgaggatgt
     1981 ggtgcgcatc gtcgacgaag cctccgaggt gctgcagttc aaccgcgccc tgctgcaggg
     2041 tgcgatcgag aacatcaccc agggcatcag cgtggtcgac cagaacctgc gcctggtggc
     2101 ctggaaccac cgctacctgg agctgttcga gtaccccgag gggctgatcg gcgtcggccg
     2161 gccgatcgcc gacatcatcc gctacaacgc cgagcgcggc ctgtgcggcc ccggcgatgt
     2221 cgaggaacac gtggccaagc gcctgttctg gatgcgccag ggcaaggcgc acacttccga
     2281 gcggctgttc cccaacggcc gggtcatcga gctgatcggc aacccc
//
LOCUS       DATIHC010000987         2589 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18588, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000987 DATIHC010000000
VERSION     DATIHC010000987.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2589)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2589
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18588"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..319)
                     /locus_tag="VLF16_16420"
     CDS             complement(<1..319)
                     /locus_tag="VLF16_16420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72519.1"
                     /translation="MNQPATEPAFRDALLQALVSCAAQHFEQAADYAHLNGLQASTEL
                     RNGEHLELCLTLRRPSDNMPCCYRIRAVPDSRLVLHEKTYGAEVQRLQAALDSINDTL
                     IETE"
     gene            complement(409..651)
                     /locus_tag="VLF16_16425"
     CDS             complement(409..651)
                     /locus_tag="VLF16_16425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72520.1"
                     /translation="MEAEAVILLAISSWFLVAAAMLWGMLRIVRRHARDVDERQAETL
                     VRLAPPPARRSKPRRHKQPRPAFAPAYRAAHRFAHR"
     gene            complement(664..1254)
                     /locus_tag="VLF16_16430"
     CDS             complement(664..1254)
                     /locus_tag="VLF16_16430"
                     /inference="COORDINATES: protein motif:HMM:NF024852.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HSX72521.1"
                     /translation="MRNMETPTYKLLVYGGDSSLGSAILAEALHRQLEATAVLDDLNE
                     QRARPGLRAKSGGLSDPIEVSRSVAGMHGVICLLDVALKDQDDFALRFNTLIALLDGL
                     ETAGVKRLMVVDDFAWLDRDLAPESPVHHLTDRLKASTVAWTLVQAPPSSDVDLGIDD
                     FKQPGASALPLHRFAMAMLDELDLALHHHQRLQIDL"
     gene            complement(1257..1469)
                     /locus_tag="VLF16_16435"
     CDS             complement(1257..1469)
                     /locus_tag="VLF16_16435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012698724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72522.1"
                     /translation="MAKKNAFLVSYILDNQPQSVTVEDEAESMTPEQALARLQTQHGG
                     ATITDVQVTHIDPERTAFTPGHYQQP"
     gene            1616..1756
                     /locus_tag="VLF16_16440"
     CDS             1616..1756
                     /locus_tag="VLF16_16440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_252273339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PSPA7_2676 family Cys-rich small protein"
                     /protein_id="HSX72523.1"
                     /translation="MKLACLINGCTWTAGTLMDMGKETLLCQCCSRCGSFRYLLGGDA
                     SS"
     gene            1816..>2589
                     /locus_tag="VLF16_16445"
     CDS             1816..>2589
                     /locus_tag="VLF16_16445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003245882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045027 - DNA end binding [Evidence IEA];
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HSX72524.1"
                     /translation="MARAIWKGAISFGLVHIPVALVSATSSQGVDFDWLDKRSMDPVG
                     YKRVNKVTGKEVTKEHIVKGVEYEKGRYVVLSEEEIRAAHPESTQTIDIFAFVDSPQI
                     PLQNIDTPYYLAPDRRGEKVYALLREALASTGKVALAHVVLHTRQYLATLMPLESALV
                     LVKLRWPAEVRGLESLELGPAVTKAKLAKSELDMAKRLIKDMSGDWQPEEYQDSFQDR
                     ILELVERKAKAGKIEEVEKVSGGEERRSADVIDLTELLRR"
BASE COUNT          447 a          796 c          899 g          447 t
ORIGIN      
        1 gttcggtctc aatcagcgtg tcgttgatcg agtcgagcgc cgcctgcagc cgctgaacct
       61 cggcgccgta ggttttctcg tgcagcacca gacggctgtc gggcacggcg cggatgcggt
      121 agcagcaggg catgttgtcg ctggggcggc gcagggtcag gcacagttcc aggtgctcgc
      181 cgttgcgcag ctcggtgctg gcctgcaggc cgttgagatg ggcgtagtcc gccgcctgct
      241 cgaaatgctg cgcggcgcag ctcaccaggg cctgcagcag ggcatcgcgg aaggccggct
      301 cggtcgcggg ttggttcatg gtcgattcct cgtctacatc ggttcgacgt acgaccggcg
      361 cgggcgaggg cgagtgccgg acattttttg cgcgtgcttt ataggcgctc agcggtgggc
      421 gaaacggtgt gcggcgcggt aggcgggggc aaaggccggg cgcggctgct tgtgccggcg
      481 cggcttgctg cgccgcgcgg gcggcggtgc cagacgcacc agcgtctcgg cctggcgctc
      541 gtcgacgtcg cgcgcatggc ggcggacgat gcgcagcatg ccccagagca tggcggcggc
      601 gaccaggaac caggatgaaa tggcgaggag aatgacggct tcggcttcca tcgacctttc
      661 ctcctacaga tctatctgca gtcgttggtg gtgatgcagc gccaggtcca gctcgtcgag
      721 catggccatg gcgaagcgat gaaggggcag ggcggacgcg cccggctgct tgaaatcgtc
      781 gatgccgagg tccacatcgg acgacggcgg cgcctgtacc agggtccagg ctaccgtact
      841 ggccttcagc cggtcggtca ggtgatgtac gggcgactcg ggcgccaggt cgcggtccag
      901 ccaggcgaag tcgtcaacca ccatcaggcg ctttaccccg gcggtctcca gcccgtccag
      961 cagcgcgatc agcgtgttga agcgcagggc gaagtcgtcc tgatccttca acgccacatc
     1021 cagcaggcag atgacgccgt gcatgccggc cacgctgcgg ctgacctcga tagggtcgct
     1081 cagcccgcca ctcttggccc gcaggcccgg acgggcgcgc tgctcgttga ggtcgtcgag
     1141 caccgccgtg gcctcgagct ggcggtgcaa cgcctccgcc agaatcgcac tgccgaggct
     1201 gctgtcgccg ccgtagacca gcagcttgta cgtcggggtt tccatgtttc tcatggtcag
     1261 ggctgctggt agtggcccgg ggtgaaggcg gtgcgctcgg ggtcgatatg ggtcacctgc
     1321 acgtcggtga tagtggcgcc gccgtgctgc gtctgcagtc gcgccagcgc ctgttccggc
     1381 gtcatcgatt cggcctcatc ctccaccgtg acggactgcg gctggttgtc gagtatgtag
     1441 ctgaccagaa aggcattttt cttcgccatt gcacttctcc ctgatggcac gtaagcggta
     1501 gaccgtcgaa cgggcgcgca gggtccatca atttatggat aaaaccttcg gccgcgccgc
     1561 agggtcgatt gcgataagga aacctggcgg cgcgtgccgc gaaggagact ggcaaatgaa
     1621 actcgcatgt ctgatcaacg ggtgtacatg gaccgccggc accctcatgg atatgggcaa
     1681 ggaaaccttg ctgtgccaat gctgcagccg ctgcggcagc ttccgctatc tgctgggagg
     1741 cgacgcctcc agttaggtga aactttccca ggcggcggcg ggtcggccat gtaggtatcc
     1801 ccaggaacta ccgccatggc tcgagcaatc tggaaaggcg cgatcagttt cggcctggtg
     1861 cacattcccg tcgcactggt gtcggccacc tcctcgcagg gcgtggactt cgactggctg
     1921 gacaagcgca gcatggaccc ggtcggctac aagcgggtca acaaggtcac cggcaaggag
     1981 gtgaccaagg aacacatcgt caagggcgtg gagtacgaga agggccgcta cgtggtgctg
     2041 agcgaggagg aaatccgcgc cgcccacccg gagtcgaccc agaccatcga catcttcgcc
     2101 ttcgtcgaca gcccgcagat tcccctgcag aacatcgata caccctatta cctggcaccc
     2161 gaccggcgtg gcgagaaggt ctatgcgctg ctgcgcgagg cgctggcctc caccggcaag
     2221 gttgccttgg cccatgtggt gctgcacacg cgccagtacc tggcgacgct gatgccgctg
     2281 gagtcggcgc tggtgctggt gaagctgcgc tggcccgccg aggtccgcgg gctggagtcg
     2341 ctggaactgg gcccggcggt gaccaaggcc aagctggcca agagcgagct ggacatggcc
     2401 aagcgcctga tcaaggacat gagcggcgac tggcagcccg aggaatacca ggacagcttc
     2461 caggaccgca tcctcgagct ggtggagcgc aaggccaagg ccggcaagat cgaggaagtc
     2521 gaaaaggtat ccggtggaga agaacgccgc agcgccgacg tcatcgacct caccgaactg
     2581 ctgcggcgc
//
LOCUS       DATIHC010000988         2313 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18604, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000988 DATIHC010000000
VERSION     DATIHC010000988.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2313
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18604"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..285)
                     /locus_tag="VLF16_16450"
     CDS             complement(<1..285)
                     /locus_tag="VLF16_16450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004372937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phasin family protein"
                     /protein_id="HSX72525.1"
                     /translation="MATTVAAKKKAVVEKVEDKATVLTDVKGYARKIWLAGLGAYAKA
                     GAEGAEYFKELVKTGEGLEKQGKKRVNEQVEAANSQIETQIKSVKSGVSEV"
     gene            complement(387..665)
                     /locus_tag="VLF16_16455"
     CDS             complement(387..665)
                     /locus_tag="VLF16_16455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010488547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoic acid system family protein"
                     /protein_id="HSX72526.1"
                     /translation="MSRITVERSHNLGLATAREKAEALAQRLASEYDVTYRWSGDTLE
                     FKRSGADGTIDVAEDRVRVELKLGLLLSALGGTIKRQIEETLDKHLKA"
     gene            781..1551
                     /gene="ubiE"
                     /locus_tag="VLF16_16460"
     CDS             781..1551
                     /gene="ubiE"
                     /locus_tag="VLF16_16460"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HSX72527.1"
                     /translation="MNDPRQNPEQEKTTHFGFQDVPESQKADKVAEVFHSVAAKYDLM
                     NDVLSGGLHRLWKRFTIELSGVRPGNRVLDIAGGTGDLTRKFASLVGPTGEVVLADIN
                     DSMLKVGRDRLLDKGVAGNVQFVQADAEALPFPDNHFDVVTIAFGLRNVTRKENALRS
                     MLRVLKPGGRLLVLEFSKPGNPLLAKAYDAYSFSLLPMMGKLITNDADSYRYLAESIR
                     MHPDQETLKAMMIEAGFERTTYHNMTGGIVALHRGIKP"
     gene            1551..2165
                     /locus_tag="VLF16_16465"
     CDS             1551..2165
                     /locus_tag="VLF16_16465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004372942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 sterol-binding domain-containing protein"
                     /protein_id="HSX72528.1"
                     /translation="MLLGGLLAGVELGLNRVLQMDSTALPRLARLEGKVIEVDCQSPA
                     LRLFILPGEEGLQLASHWEHADCVLSAPASSLLRLALAKDKTAILHRPEVTLSGDSAV
                     LLELAGILQDLELDWEYELSRWLGPVGSQLLSGHLRSRAGGAGDSLESLRQTLADYLA
                     EESRSLVGEREAQARFDELDDLKLALDRLDARIDRLARNLNKTP"
     gene            2162..>2313
                     /locus_tag="VLF16_16470"
     CDS             2162..>2313
                     /locus_tag="VLF16_16470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72529.1"
                     /translation="MSLLATRRLLRILRVVIRYRLDDLLLTLPLPSWMRALRFALPWR
                     WLPRGHS"
BASE COUNT          376 a          813 c          732 g          392 t
ORIGIN      
        1 gacctcggag acgccgcttt tgacgctctt gatctgcgtc tcgatctggc tgttggcggc
       61 ctcgacctgc tcgttcaccc gcttcttgcc ctgcttctcg aggccttcgc cggtcttgac
      121 cagctccttg aagtactcgg cgccctcggc accggccttg gcgtaggcac ccaggccagc
      181 cagccagatc ttgcgggcgt agcccttcac gtcggtgagg acggtggctt tgtcttcgac
      241 tttctcgact acggcttttt tcttggcggc aactgtagtg gccatggtgc acctcgcgtt
      301 cggagtggtg gtctggtcgt cctttgccag gactcgagcg caaggtagaa ggaaaaatta
      361 gaaatcacat actaggccgc gcagcctcag gccttgaggt gcttgtcgag ggtctcctcg
      421 atctggcgct tgatggtgcc gccgagggcg gagagcagca ggccgagctt gagctccacg
      481 cgcacacggt cctctgccac atcgatggtg ccgtcggcgc cactgcgctt gaactccagg
      541 gtgtcgccgc tccagcggta cgtcacgtca tactcgctgg ccaggcgctg ggccaacgcc
      601 tcggccttct cgcgggcggt cgcgagaccg aggttgtggg aacgttcgac ggtgatgcgg
      661 gacatgggcg actcctgctg cgaccttgtg tcacgcgact atatcagctc ctcccggcgc
      721 caagacaaag gcaggccacg ggtttagaat ggccgccact tcgattcagg tgaccgcgac
      781 atgaacgacc cgcgccagaa cccagagcag gaaaagacca cccacttcgg cttccaggat
      841 gtgccggaaa gccagaaggc ggacaaggtc gccgaggtct tccactcggt cgcggccaag
      901 tacgacctga tgaacgacgt gctctccggc ggcctgcacc gcctgtggaa gcgcttcacc
      961 atcgagttgt ccggcgtgcg cccgggcaac cgcgtgctgg acatcgccgg cggcaccggc
     1021 gacctcaccc gcaagttcgc gagcctggtc ggcccgaccg gcgaagtggt gctggccgac
     1081 atcaacgact ccatgctcaa ggtcggtcgc gaccgcctgc tggacaaggg cgtggccggc
     1141 aacgtgcagt tcgtccaggc cgacgccgag gcgctgccct tcccggacaa ccacttcgac
     1201 gtggtcacca tcgccttcgg cctgcgcaac gtgacgcgca aggaaaacgc cctgcggtcc
     1261 atgctgcgcg tgctcaagcc gggcggtcgc ctgctggtgc tggagttctc caagccgggc
     1321 aacccgctgc tggccaaggc ctacgacgcc tactcgttca gcctgctgcc gatgatgggc
     1381 aagctgatca ccaacgatgc cgacagctac cgctacctgg ccgaatcgat ccgcatgcac
     1441 ccggaccagg aaaccctcaa ggccatgatg atcgaggccg gcttcgagcg aaccacctac
     1501 cacaacatga ccggcggcat cgtcgccctg caccggggca tcaagccctg atgctgctgg
     1561 gcggcctgct ggccggcgtc gagctcggcc tcaaccgcgt gctgcagatg gacagcaccg
     1621 cgctgccgcg tctggcccgc ctggaaggca aggtgatcga ggtcgattgc cagagcccgg
     1681 cgctcaggct gttcatcctg cccggcgaag aagggctgca gctggcgagc cactgggagc
     1741 atgccgactg cgtgctcagc gcccccgcca gcagcctgct gcgcctggcc ctggccaagg
     1801 acaagaccgc catcctgcat cgcccggaag tcaccctgag cggcgacagc gcggtgctgc
     1861 tggagctggc cggcatcctc caggacctgg agctggactg ggaatacgaa ctgtcgcgct
     1921 ggctcggccc ggtcggcagc cagctgctgt ccggccacct gcgcagccgc gcgggggggg
     1981 ccggcgacag cctggagagc ctgcgacaga ccctggccga ctatcttgcc gaagagtcgc
     2041 gcagcctggt cggcgaacgc gaggcccagg cccgcttcga cgaactggac gacctcaagc
     2101 tggccctcga ccgcctcgac gcgcgcatcg accgcctcgc ccggaacctg aacaagaccc
     2161 catgagcctg ctcgccaccc gccgcctgct gcgcatcctg cgcgtggtca tccgctaccg
     2221 cctggacgac ctgctgctga ccctgccgct gccctcctgg atgcgcgccc tgcgcttcgc
     2281 cctgccctgg cgctggctgc cccgcggcca ttc
//
LOCUS       DATIHC010000989         4182 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_39428, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000989 DATIHC010000000
VERSION     DATIHC010000989.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4182
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39428"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..663
                     /gene="purU"
                     /locus_tag="VLF16_16475"
     CDS             <1..663
                     /gene="purU"
                     /locus_tag="VLF16_16475"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008864 - formyltetrahydrofolate
                     deformylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HSX72530.1"
                     /translation="RQAFAPIAREFSMEWRVTESERKKRVVLMASRESHCLADLLHRW
                     HSDELDCEIPCVISNHDDLRSMVEWHGIPFHHVPVDPKDKAPAFAEVSRLVGEYQADV
                     VVLARYMQILPPQLCQAYAGRVINIHHSFLPSFVGAKPYHQASLRGVKLIGATCHYVT
                     EELDAGPIIEQDVVRVSHRDSVEDMVRLGKDVEKMALARGLRFHLEDRVLIHDNKTVV
                     FD"
     gene            680..871
                     /locus_tag="VLF16_16480"
     CDS             680..871
                     /locus_tag="VLF16_16480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003163014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72531.1"
                     /translation="MKRGEAIPPPTLGEGCLQRYDPEALKDSDGTEFPGAAELWKQLQ
                     DKPAAEKGEAQESPAPGRD"
     gene            complement(868..2760)
                     /locus_tag="VLF16_16485"
     CDS             complement(868..2760)
                     /locus_tag="VLF16_16485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016984623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSX72532.1"
                     /translation="MLSNLKFSQKILLAASLVTITAFTLFVLFNDYRQRQTLSDEVHA
                     SLQEVGGLATRNIKTWLDGRIQLVESLAQQLAANGEQGEPLQAALSLPVYAQGFQLTY
                     FGGADGAMTSVPAGNRPADYDPRARGWYQAASAAQGSALTEPYIAASSKKLVITIATP
                     VRRGGQMVGVAGADMDLENIAQLIGSLKFQGHGHAFLVSAQGKVLLHPDSAFTLKDIK
                     ELYPQDTPRVQAGVSEVEVDGKTQFIAFTPLQGLPSANWYVALVLDQDAAFATLDEFR
                     ASAVVATLVAVIATLLLLGMLIRVLMQPLLLMGKAMRDIAQGEGDLTKRLNVQSRDEF
                     GELASSFNQFVERIHGSIREVSSATQQLNEVAKLVVNASNSSMANSDEQASRTNSVAA
                     AINELGAAAQEIARNAADASHQASDARHLAEDGSQVLQKTITAMNELSEKISASCRNI
                     ETLNSKTVNIGQILEVIKSISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHR
                     TQESAQEIQKMIEELQVGARESVGTMTESQRYSEQSVEIANQAGERLGSVTLRIGEID
                     GMNQSVATATEEQTAVVDSLNMDITEINTLNQEGVENLQATLRACGDLEQQAARLKQL
                     VDSFRI"
     gene            complement(3090..3575)
                     /locus_tag="VLF16_16490"
     CDS             complement(3090..3575)
                     /locus_tag="VLF16_16490"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017905152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HSX72533.1"
                     /translation="MKGNSGYLPVLEYLQRQLAGTLAPGEETHMLYPTAISQLLGYRI
                     IDIGEALAEIELHVDAVRHGNQQGTVHGGLLCELADAAIGTAHSTLMNEGESFTSIDL
                     KATFLRPVWQSRLRALARATHRGSTLCHYQCDIHRDDGKVVATVTSAIMTLRGERAAG
                     R"
     gene            complement(3774..>4182)
                     /locus_tag="VLF16_16495"
     CDS             complement(3774..>4182)
                     /locus_tag="VLF16_16495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017360459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HSX72534.1"
                     /translation="LPFRDDKLVMLVPRDHPLADRQLTELRDALGYPFVCLPAERAMQ
                     RFIEERATQYAMPLKVRVRAPSFDAIAQLVAQRAGVALLPEATAARLALELPVALVTL
                     EDAWATRELRICIQGWEALSPHARQLVNFLASR"
BASE COUNT          637 a         1327 c         1484 g          734 t
ORIGIN      
        1 cgccaagcct ttgcgcctat cgccagggaa ttctccatgg agtggcgcgt taccgaatcc
       61 gagcggaaga agcgcgtggt actgatggcc agtcgcgagt cccactgcct ggcggacctg
      121 ctgcaccgct ggcacagcga cgagctggat tgcgagattc cctgcgtgat ctccaaccac
      181 gacgacctgc gcagcatggt cgaatggcac ggcattccct tccatcacgt gccggtggac
      241 cccaaggaca aggcgccggc cttcgccgag gtgtcgcggc tggttggcga ataccaggcc
      301 gacgtggtgg tgctcgcccg ctacatgcag attctcccgc cgcagctgtg ccaggcctac
      361 gccggccggg tgatcaacat tcaccacagc ttcctgccgt cgttcgtcgg tgccaagccg
      421 taccaccagg cctcgctgcg cggggtcaaa ctgatcggcg ccacctgtca ctacgtcacc
      481 gaggaactgg atgccggccc tatcatcgag caggacgtgg tgcgcgtgag ccaccgcgac
      541 agcgtcgagg acatggtgcg attgggcaag gatgtggaga agatggcgct ggcgcgcggc
      601 ctgcgcttcc acctggaaga tcgcgtgctg attcacgaca acaagacggt ggtgttcgac
      661 tgaccgtcgg gaggcgagga tgaaaagggg cgaggccata ccgccgccca ccctcggcga
      721 gggttgcctg cagcgctacg accccgaggc gctgaaggac agcgacggca ccgagtttcc
      781 cggtgccgcc gagctctgga agcaactgca ggacaagcct gcggcagaga agggcgaggc
      841 gcaggagagc cctgcgccgg gccgggacta gatccggaag ctgtcgacca gctgcttcag
      901 gcgcgccgcc tgctgctcca ggtcgccaca ggcgcgcagg gtcgcctgaa ggttctccac
      961 gccctcctgg ttgagggtgt tgatctcggt gatgtccatg ttcagcgagt cgaccacggc
     1021 ggtctgctcc tcggtggcgg tggccaccga ctggttcatg ccgtcgatct cgccgatgcg
     1081 cagggtcacg ctgcccaggc gctcgccggc ctggttggcg atctccacgc tctgctcgct
     1141 gtagcgctgg ctctcggtca tggtgcccac cgactcgcgg gcgcccacct gcagctcctc
     1201 gatcatcttc tggatttcct gggccgactc ctgggtgcgg tgcgccaggt tgcgcacctc
     1261 gtcggccacc acggcgaagc cgcggcccgc ctcgccggcg cgggcggcct cgatggcggc
     1321 gttgagggcc agcaggttgg tctgctcgga gatgctcttg atcacctcga ggatctggcc
     1381 gatgttcacc gtcttgctgt tcagcgtctc gatgttgcgg cacgaggcgc tgatcttctc
     1441 cgacagctcg ttcatcgcgg tgatggtctt ctgcagcacc tggctgccgt cctcggccag
     1501 gtgacgggcg tcggaggcct ggtgcgaggc gtcggcggcg ttgcgcgcga tctcctgggc
     1561 ggcggcgccc agctcgttga tcgccgcggc cacgctgttg gtgcggctgg cctgctcgtc
     1621 ggagttggcc atggacgagt tggaggcgtt gaccaccagc ttggccactt cgttgagctg
     1681 ctgggtggcc gaggacacct cgcggatcga gccgtggatg cgctcgacga actggttgaa
     1741 ggaactggcc agctcgccga attcgtcgcg gctctgcacg ttcaggcgtt tggtcaggtc
     1801 gccttcgccc tgggcgatgt cgcgcatggc cttgcccatc agcagcagcg gctgcatcag
     1861 cacgcggatc agcatgccga gcaggagcag ggtggcgatc accgcgacga gggtggcgac
     1921 cacggcggag gcgcggaact cgtcgagggt ggcgaaggcc gcgtcctggt ccagcaccag
     1981 ggcgacgtac cagttggccg agggcaggcc ctgcagcggg gtgaaggcga tgaactgggt
     2041 cttgccgtcc acctcgacct cgctgacgcc ggcctgcacg cgcggggtgt cctgcgggta
     2101 cagctccttg atgtccttga gggtgaaggc gctgtccggg tgcagcagca ccttgccctg
     2161 ggcgctgacc aggaaggcat ggccgtggcc ctggaacttc agcgagccga tcagctgggc
     2221 gatgttctcc aggtccatgt cggcaccggc cacgccgacc atctggccgc cacggcgcac
     2281 cggggtggcg atggtgatca ccagcttctt cgacgaggcg gcgatgtagg gctcggtcag
     2341 cgcgctgccc tgggcggcgc tggccgcctg gtaccagccg cgggcgcgcg ggtcgtagtc
     2401 ggccgggcgg ttgccggcgg gcaccgaggt catggcgccg tcggcgccgc cgaagtaggt
     2461 gagctggaag ccctgggcat acaccggcag gctcagcgcg gcctgcagcg gctcgccctg
     2521 ttcgccgttg gcggcgagct gctgggccag cgattcgacc agctggatgc ggccgtccag
     2581 ccaggtcttg atgttgcggg tggcgagtcc accgacttcc tgcagcgagg cgtgcacctc
     2641 gtcgctcagc gtctggcgct ggcggtagtc gttgaacagc acgaacaggg tgaacgcggt
     2701 gatcgtcacc agcgaggcgg cgagcaggat cttctggctg aacttcaggt tggaaagcat
     2761 cgcaaggtat ccatcgaggg tgcgggcagg tacggcagtt atcgcagcgg gtcgtgtccg
     2821 ccgcgtgtca tcgtcccgct cgttcgccca ccgcgatccg tccggcaagg tcggaaggca
     2881 ggtcggcgag ggacgagcgg ggtgggcgcg gcgctgtacg ccgcgcggcc ttaccggcgt
     2941 tggaggtctt gtggtccgga gggcatcgcg cgcgccggag aaggtcttcg gcgcgccgcg
     3001 aaactatcgg caccctgccg gcaaacatga ggccgacttc ggtcggattt gcggcaaaaa
     3061 gctatggctt tgagcctcgc tgccgcgggt cagcgtccgg cggcgcgctc gccacgcagg
     3121 gtcatgatgg cgctggtgac ggtggcgacc accttgccgt cgtcgcgatg gatgtcgcac
     3181 tggtagtggc agagcgtgct gccgcggtgg gtcgcccggg ccagcgcgcg caggcgcgat
     3241 tgccacaccg gacgcagaaa ggtcgccttg aggtcgatgc tggtgaagct ttcgccctcg
     3301 ttcatcagcg tcgaatgggc ggtgccgatg gcggcatcgg ccagctcgca gagcagcccg
     3361 ccgtgtacgg tgccctgctg gttgccgtgg cgcaccgcgt cgacgtgcag ctcgatctcc
     3421 gccagggcct cgccgatatc gatgatgcga tatccgagca gctgcgagat cgcggtgggg
     3481 tagagcatgt gtgtctcttc gcccggcgcg agggtgcctg ccagctggcg ctgcaggtat
     3541 tccagaaccg gcagatagcc cgaatttccc ttcatgtgcg tcctccagac ggatgcgctg
     3601 aaaaattacc ctaacttatg ccggtgccca cggtcactgc ttcgggtctg atcaactcga
     3661 gggcacagac aatgatgatt accgggatgg tggtggtgtt ctttctgatt gtcggctggc
     3721 tgtgtctgga tgccataggc tcctgaaaac gaacaggctt tcgcgttccc tgcctagcgg
     3781 ctggcgagga agttcaccag ctgccgtgcg tggggcgaaa gcgcctccca accctggatg
     3841 cagatgcgca attcgcgggt cgcccaggcg tcttccagcg tgaccagtgc caccggcaac
     3901 tccagcgcca ggcgcgccgc cgtggcctcg ggcagcaggg ccacaccggc gcgctgcgcc
     3961 accagctggg cgatggcgtc gaagctcggc gcacgcacgc gcaccttcag gggcatggca
     4021 tactgggtgg cgcgctcctc gatgaagcgc tgcatggcgc gctccgccgg cagacagacg
     4081 aagggatagc caagggcatc gcgcagctcg gtcagctgac ggtcggccag cgggtggtcg
     4141 cgcggcacca gcatcaccag cttgtcgtcg cgaaagggca gc
//
LOCUS       DATIHC010000990         4111 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_25672, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000990 DATIHC010000000
VERSION     DATIHC010000990.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 4111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4111
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25672"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..274
                     /locus_tag="VLF16_16500"
     CDS             <1..274
                     /locus_tag="VLF16_16500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020301483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72535.1"
                     /translation="FVVLASGHDDDGEALRIRADARLAAATLAAGQSAEYPLGRLRKG
                     YLVAAKGRIEVNGVEAAERDGVAIAEEEVVRVTALEDSEVILVDVA"
     gene            complement(452..1813)
                     /gene="rmuC"
                     /locus_tag="VLF16_16505"
     CDS             complement(452..1813)
                     /gene="rmuC"
                     /locus_tag="VLF16_16505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HSX72536.1"
                     /translation="MLEERLNQARLAQQGLSAQLDGALDDLRGVQQHNSDQQAELAAL
                     RRESELLGREREAAQQAAQDWSREREQKEGQLRQLESQRAALAAELREQQDSHQQRFA
                     DLQGARDELRAQFAELAGKIFDEREQRFAETSQQRLGQLLDPLKERIQAFEKRVEESY
                     QNEARERFSLAKELERLQLLNQRLGDEATNLTRALKGQKTQGNWGELVLERVLEHAGL
                     EKGREYHTQVSLKGAEGERFQPDVLIQLPGDKQVIVDAKVSLTAYQAMIVAEDEAART
                     HALKQHVLSLRAHLKGLSVKDYKRLEGLHSLDFVLLFVPIEAAFAAALQADPGLFQEA
                     FEQHIVIVSPTTLLATLRVIDSLWRQERQSQNALEIAERAGQLYDKFVAFIQDLDEVG
                     SRLKQLDKAYDAARNKLCDGRGNLINRVENLKLLGARASKSLAPDLIERAAGLPILDE
                     AGD"
     gene            complement(1992..2402)
                     /locus_tag="VLF16_16510"
     CDS             complement(1992..2402)
                     /locus_tag="VLF16_16510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003450075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HSX72537.1"
                     /translation="MKSRVLPAQSRSDSDHRLPIRLAFWLLDNARLARHSGVKRFAGR
                     LLKRPARQGVVAAQSRLGQLLCRDCGNTRDRRIGFELLRQAARAGDSCAQLELGRLYC
                     QPRQREPQQARHWLELAAGHGSHEAKRLLQRLNP"
     gene            complement(2767..3519)
                     /locus_tag="VLF16_16515"
     CDS             complement(2767..3519)
                     /locus_tag="VLF16_16515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RES family NAD+ phosphorylase"
                     /protein_id="HSX72538.1"
                     /translation="MDIWQACAGAQQIIPLRGRLVRLVENQGQVATLQLVDTLEEQAL
                     LEQLLEASKPPLPPADEPLHYLLRTPFRYPPLRWGSRFGRRHEPSLFYAACRLETAMA
                     ETAFYRFVLWHGMVEPPPSGRILSEHSSFEARYQVQRGVRLQLPPFERHREVLTHRSD
                     YRATHALGSAMREAGVEAFEYPSARCPQGGLNVALYAPGAFSEKRPRNLQPWLCETTA
                     AYVAFKSAQAPDTPRLFGLELYLVDGRLPQPA"
     gene            complement(3567..3938)
                     /locus_tag="VLF16_16520"
     CDS             complement(3567..3938)
                     /locus_tag="VLF16_16520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003157715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin Xre/MbcA/ParS toxin-binding
                     domain-containing protein"
                     /protein_id="HSX72539.1"
                     /translation="MSALSKPDANAEAVLLKALLNAREQLGLTQQELAGIVGVNRSAI
                     SRWGDSGGLRPQSKTGELALLLIRAYRALFALFGGNLDDMRHFLRTENRHLAGVPLEQ
                     MAQVQGLVRVVEYLDAIRGKV"
BASE COUNT          640 a         1379 c         1430 g          662 t
ORIGIN      
        1 gttcgtggtc ctggccagcg gccacgacga tgacggggag gccctgcgca tccgcgccga
       61 tgcccgcctc gccgccgcca ccctggccgc cgggcagagc gccgagtacc cgctgggccg
      121 cctgcgcaag ggctacctgg tggccgccaa gggccgcatc gaggtcaatg gcgtggaagc
      181 cgccgaacgc gacggcgtgg ccatcgccga ggaggaagtg gtgcgcgtca ccgccctgga
      241 agacagcgag gtgatcctgg tcgacgtcgc ctgatccagc gcagccgcgg cgccggcgcc
      301 gcgttccaga ccgggttcgt ccccgtcccg ggagtgcgcg atgccggcgg ccgcagaacc
      361 ggcctcaacc tcgccaccgc gctcggcgcc ggtctgccga tcgacgccga gcgcggttgc
      421 ctgcgcgtgg cgacgacgac acccggcggg tctagtcgcc ggcctcgtcc agtatgggca
      481 ggccggcggc gcgctcgatc agatccggcg ccaggctctt gctggcgcgg gcgccgagca
      541 gcttgaggtt ctcgacccgg ttgatcagat tgccgcgtcc gtcgcatagc ttgttgcgcg
      601 cggcgtcgta ggccttgtcc agttgcttga ggcggctgcc gacctcgtcc agatcctgga
      661 tgaaggcgac gaacttgtcg tacagctgcc ctgcccgctc ggcgatctcc agagcgttct
      721 ggctctgccg ctcctggcgc cagaggctgt cgatcacccg cagggtcgcc agcagcgtgg
      781 tcgggctgac gatcacgatg tgctgctcga aggcctcctg gaacagcccc gggtcggcct
      841 gcagcgcggc ggcgaaggcc gcctcgatgg gcacgaagag cagcacgaag tccaggctgt
      901 gcaagccctc gaggcgcttg tagtccttca ccgagaggcc cttgaggtgg gcgcgaaggc
      961 tcagcacgtg ctgcttcagc gcatgggtcc gcgccgcctc gtcctcggcg acgatcatcg
     1021 cctggtaggc ggtgaggctg accttggcat cgacgatcac ctgcttgtcg ccaggcagct
     1081 ggatcaacac gtccggctgg aagcgctcgc cctcggcacc cttgaggctg acctgggtgt
     1141 ggtactcgcg gcccttctcc aggccggcgt gctccagcac ccgttccagc accagctcgc
     1201 cccagttgcc ctgggtcttc tggcccttga gcgcgcgggt caggttggtg gcctcgtcgc
     1261 ccaggcgctg gttgagcagc tgcaggcgct ccagctcctt ggccagggag aagcgctcgc
     1321 gcgcctcgtt ctggtagctc tcctccacgc gcttctcgaa ggcctggatg cgctccttga
     1381 gcgggtcgag caactggccc aggcgctgct ggctggtctc ggcaaaacgc tgctcgcgct
     1441 cgtcgaaaat ctttccggcc agctcggcga actgcgcgcg cagctcgtcg cgggcgccct
     1501 gcaggtcggc gaagcgctgc tggtggctgt cctgctgctc gcgcagctcg gcggccaggg
     1561 cggcgcgctg gctctccagc tggcgcagct ggccttcctt ctgttcgcgt tcgcggctcc
     1621 agtcctgcgc ggcctgctgc gcggcctcgc gctcgcggcc gagcagctcg ctttcgcggc
     1681 ggagggcggc cagctcggcc tgctggtcgc tgttgtgctg ctgcacacca cgcaggtcgt
     1741 cgagggcgcc atcgagctgg gcgctcaggc cctgctgggc cagtcgcgcc tggttcaggc
     1801 gttcctccag cagcagtcgc tcggccgcct gcgtcgcctg agcgcgttgc aggcgccagg
     1861 ccagcacggc cagcggaacg gcgccgagca gcaggccgag caacaggttg gagggttcga
     1921 ggacgaagga gaaaggcacg ggcgggctcg ctgtcgggtt cgcaatgccc ggcagtatac
     1981 ccgcgcggga atcaggggtt gaggcgctgc agcagccgct tggcctcgtg ggagccatgc
     2041 ccggcggcga gctccagcca gtggcgggcc tgctgcggct cgcgctggcg cggctggcaa
     2101 tagaggcggc cgagctccag ctgggcgcac gaatcaccgg cgcgggcggc ctggcgcaac
     2161 agctcgaagc cgatgcggcg atcacgggtg ttgccgcagt cgcggcacag cagttgaccc
     2221 aggcggctct gggccgcgac cacgccctgg cgggcaggac gcttgagcag gcggccggcg
     2281 aagcgcttga ccccggagtg gcgggccagt cgggcattgt cgagcagcca gaaggccagg
     2341 cggatcggca gacggtggtc gctatcggaa cgagactgag cgggcagaac gcgagacttc
     2401 atgtaagcaa aggctgactg cggggcgcgc cactctactc tctttttccg ctcggtaaag
     2461 acttgccaaa accgccgaac cgcgctctag agcaactgct cgggaaatcc acagaagctg
     2521 tggataactc cgtggacaac atggtggaaa cctttctcat cccccactgt ccgcggcttc
     2581 gactcaaact gatgcttttt tcaccaatga aaaaaaacct tatttttcag ctagttgaaa
     2641 aatggccatg cagaatcaag cggttacggc gctttgtgac agaagcttga caagccgcct
     2701 cgccattgtg cacaagtgcg ccgctctggg gcgcgcccct gcgcgttttc gacgcattgc
     2761 gttcgctcag gccggctgcg gcaggcgccc gtcgaccagg taaagctcga ggccgaacag
     2821 acgcggcgtg tccggtgcct gtgcactctt gaaggccaca taggccgccg tggtttcgca
     2881 cagccagggc tgcagattgc gcgggcgctt ctcgctgaac gcgcctggtg cgtacagggc
     2941 gacattgaga ccgccctgtg gacagcgtgc cgacggatac tcgaaggcct cgacccccgc
     3001 ctcgcgcatg gcactgccga gggcgtgggt ggcgcggtag tcgctgcggt gggtcagcac
     3061 ctcgcgatgc cgctcgaagg gcggcagttg caggcgcacg ccacgctgca cctggtagcg
     3121 cgcctcgaag gaggaatgct cggagaggat gcgcccgctg ggcggcggct cgaccatgcc
     3181 gtgccacagc acgaagcggt agaaggcggt ctcggccatg gccgtttcca gccggcaggc
     3241 ggcgtagaac aggctcggct cgtgacgccg gccgaagcgc gagccccagc gcagcggcgg
     3301 atagcggaac ggcgtgcgca gcagatagtg caacggctca tcggccggcg gcagcggcgg
     3361 cttgctggcc tccagcaact gctcgagcag ggcctgctcc tccagcgtgt cgaccagctg
     3421 cagcgtggcg acctggccct ggttctccac cagacgcacc aggcggccac gcaaagggat
     3481 gatctgttgt gcgccggcgc aggcctgcca gatgtccata tctaaactcg cttggcccgc
     3541 cgcggcgggg ccttcaggga agaggatcag accttgccgc gaatggcgtc gaggtattcc
     3601 accacccgca ccaggccctg tacctgggcc atctgctcca gcggcacgcc ggccaggtgg
     3661 cggttctcgg tgcgcagaaa gtggcgcatg tcatcgaggt tgccgccgaa cagggcgaac
     3721 agcgcccggt aggcgcggat cagcagcagc gccagctcgc cggtcttgct ctgcggccgc
     3781 agcccgccgc tgtcgcccca gcgactgatg gcggaacggt tgaccccgac aatgccggcc
     3841 agctcctgct gggtcagccc cagttgctcg cgggcattga gcaacgcctt gagcaggacg
     3901 gcctcggcgt tcgcatccgg cttggagagt gcgctcatgg agagccctcg ctgatgttcg
     3961 tttgatacaa aactagcaga taaaactcaa aacgaacacc actgaaagcg ccgccgcctg
     4021 ggcgctatcc cgcgccccgc gtggagccga tatgccgggc ggcggtatcg atcaggagga
     4081 aggccgcgat cggcagcacg atcaccagca g
//
LOCUS       DATIHC010000991         2268 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_18642, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000991 DATIHC010000000
VERSION     DATIHC010000991.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2268)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2268)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2268
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18642"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            93..1046
                     /locus_tag="VLF16_16525"
     CDS             93..1046
                     /locus_tag="VLF16_16525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007929155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HSX72540.1"
                     /translation="MPVHVVHFEHQNTRQWGVIRGERIARIAGEFASTGALITGTRLE
                     DLAALPDGELALGEVRLLSPVTRDQQFVCQGANYRQHMIESGMDPDVKHFNMIFTKAQ
                     SCIVAADSELIKPREVRFLDYEIELGLVLRRAINGKVAVTEANLHEFVAGVVIVNDYS
                     ARDIQIPQMQFYKGKSFRTFGPVGPFLCLLGPQDMGYLKKLQLRLTVNGQVRQQDSTA
                     NLVYGPAETLSELSGVQDFAAGDLIATGTPAGCALSIPSPAKQRIAALLPEATKWKLF
                     MKAQADRSQYLKAGDLVEASIRSADGVIDLGVQRNSVVEQG"
     gene            1046..>2268
                     /locus_tag="VLF16_16530"
     CDS             1046..>2268
                     /locus_tag="VLF16_16530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008002501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HSX72541.1"
                     /translation="MAVKHLADIEAIESVPLERHKLPASTYAALQRCAATHADDPALS
                     FFVDAKAFHDTHDWTYAELFADITRAANAFHELGIGPRDVVAFLLPNLPETHFTIWGG
                     EAAGIVMAINPLLEAAQIGELLRAANAKLVVTLAPTPGSDLWPKLSSQLERLPGVREI
                     VWVSMAPYVGTLPGLALRWLAWREKSRQRGLRIHDLRSLMQRQPGERLSSGRQIRAEE
                     HSSYFCTGGTTGLPKIAIRSHGSEVFNAWAMARNLQPREAGQVIFCGLPLFHVNGQLV
                     TGLMPWTHGDRVIIGTPQGYRGDGVIAGFWAMVEHFGINFFSGVPTVYSALLQQPIGD
                     RDLSSLQYALCGAAPMPVELFREFEQRSGVRILEGYGLTEGACVSSSNPPEGERPIGS
                     IGLRLAYQDMRALIL"
BASE COUNT          384 a          788 c          737 g          359 t
ORIGIN      
        1 ccgccgcact gctgccagcg ctcggccagg ataccgcaga acaacaaaac gccgccgtcg
       61 agcggccaac agcagcacca ggagtcgcgt ccatgcccgt tcatgtagtc cacttcgaac
      121 accagaacac acgtcaatgg ggcgtcatcc gaggggagcg catcgcccgt atcgcgggtg
      181 agttcgccag caccggcgcg ctgattaccg gtacgcgcct ggaggacctg gccgcactgc
      241 cggacggcga gctggcgctg ggcgaggtca ggctgctgtc gccggtgacc cgtgaccagc
      301 aattcgtctg ccagggcgcc aactaccgcc agcacatgat cgagtcgggc atggacccgg
      361 acgtgaagca cttcaacatg atcttcacca aggcgcagag ttgcatcgtc gccgccgaca
      421 gcgaactgat caaaccgcgc gaggtgcgct tcctcgacta cgagatcgag ctgggcctgg
      481 tgctgcgtcg cgccatcaac ggcaaggtcg ccgtcaccga ggccaacctg cacgagttcg
      541 tcgccggcgt ggtaatcgtc aacgactact cggcgcgcga tatccagatc ccgcagatgc
      601 agttctacaa gggcaagagc ttccgcacct tcggcccggt cggcccgttc ctctgcctgc
      661 tcggcccgca ggacatgggc tatctcaaga agctgcagct gcgcctgacg gtcaacggcc
      721 aggtgcgcca gcaggacagc accgccaacc tggtttacgg cccggcggag acgctcagcg
      781 aactgtccgg cgtgcaggac ttcgccgccg gcgacctgat cgccaccggc accccggccg
      841 gttgcgcgct ttcgattcct tcgccggcca agcagcgcat cgccgcgctg ctgccggagg
      901 cgaccaagtg gaagctgttc atgaaggccc aggccgatcg cagccagtac ctcaaggccg
      961 gcgacctggt ggaagccagc atccgcagcg ccgacggcgt gatcgacctc ggcgtgcagc
     1021 gcaacagcgt ggtggagcaa ggctgatggc ggtcaagcat ctggccgata tcgaggccat
     1081 cgagagcgtg ccgctcgagc ggcacaagct gccggccagc acctatgccg cgctgcagcg
     1141 ctgtgcggcc acgcatgccg atgatccggc gctgagcttc ttcgtcgacg ccaaggcctt
     1201 ccacgacacc cacgactgga cctacgccga gctgttcgcc gatatcaccc gcgcggccaa
     1261 cgccttccac gagctcggca tcggtccgcg ggatgtggtg gccttcctgc tgccgaatct
     1321 gccggaaact cacttcacca tctggggtgg cgaggccgcc ggcatcgtca tggccatcaa
     1381 cccgctgctg gaggcggcgc agatcggcga gctgctgcgc gcggccaacg ccaagctggt
     1441 ggtgaccctg gcgccgacac cgggcagcga cctgtggccg aagctgtcca gccagctcga
     1501 gcgcctgccc ggcgtgcgcg agatcgtctg ggtcagcatg gccccctatg tcggcaccct
     1561 gcccggcctg gccctgcgct ggctggcctg gcgcgagaaa agccgccagc gcggtttgcg
     1621 catccatgac ctgcgcagcc tgatgcagcg ccagcccggc gagcgactga gcagcggtcg
     1681 gcagatccgg gccgaggagc attcctcgta tttctgcacc ggcggtacca ccggcctgcc
     1741 gaagatcgct atccgcagcc acggctcgga ggtgttcaac gcctgggcca tggcccgcaa
     1801 tctgcagccg cgagaggcgg gccaggtgat cttctgtggt ctgccgctgt tccacgtcaa
     1861 cggccagctg gttaccgggc tgatgccctg gactcacggt gatcgggtga tcatcggcac
     1921 gccccagggc tatcgcggcg atggtgtgat cgcaggcttc tgggcgatgg tcgagcactt
     1981 cggcatcaac ttcttctccg gcgtgccgac cgtgtactcg gcgctgctgc agcaaccgat
     2041 cggagaccgc gacctgtcca gcctgcagta cgcgctgtgt ggtgcggcgc cgatgccggt
     2101 cgagctgttc cgcgaattcg aacagcgcag cggcgtgcgc atcctcgagg gctacggcct
     2161 gaccgaaggc gcctgcgtct cgtcgagcaa cccgccggag ggcgagcgcc cgatcggctc
     2221 catcggcctg cgcctggcct accaggacat gcgcgcgctg attctcga
//
LOCUS       DATIHC010000992         1969 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_46596, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000992 DATIHC010000000
VERSION     DATIHC010000992.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1969)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1969)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1969
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46596"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..1880)
                     /gene="moeB"
                     /locus_tag="VLF16_16535"
                     /pseudo
     CDS             complement(1..1880)
                     /gene="moeB"
                     /locus_tag="VLF16_16535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016979257.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
BASE COUNT          293 a          634 c          731 g          311 t
ORIGIN      
        1 gtacagcggc atgtcggggt cgacgtcgcg ggcccaggcc ttgaggccgc cgcgcagtac
       61 cgtcacctcg gcgtggccgg cctccagcag ctggcgcgcg gcgcgttcgg cgcgagggcc
      121 gccgtagcag atcaggcaga gcgggcgggt gcggtccagc tcgtgcaggc gttcgcccag
      181 ctcgcccagc gggatgttga gcgcggtggg caggcggcag acttccagct cgttgggttc
      241 gcgcacgtcc agcagttgca ggtccgcgcc gctggccagg ctcagctgca attgctgcgg
      301 gctgacgaac cgcgcgtcat ccagcgcggc gtcgccagtg gcggtggccg cgcaggcgac
      361 cgggggctcg gcgcgcagcg tgcggtccgt gcgcgcgggc gagcaggtga tgcagtcgcc
      421 gcggcgcttg aagcgcacct cggtgaactt catcgccagg gcgtcgaagc gcatcaggcg
      481 accgaccaag ggttcgccga tgccgaggat cagcttgatc gcctcggtgg cctggagcag
      541 gccgaccacc ccgggcagca ccccgatcac gccgccggcg ttgcagttgg gggccagctc
      601 ggcgggtggg ctcttgggat agaggcagcg gtagcagggg ccgtcctggt ggttgaacag
      661 gctgacctgg ccgtcgaagc ggtgcagggc gccgtacacc agcgggcgct tgagcagcac
      721 gcaggcgtcg ttgagcaggt agcgcgtggc gaagttgtcg gtgccgtcga tcaccaggtc
      781 gtagtcgccg accagcttca gcgcgttgtc cggagtcagg gcgcagtcgt gggcgtcgat
      841 gcggatatcg gggttgaggt catgcaggcg gcgacgcgcc gactccacct tggcctggcc
      901 gagggtgctg gtgccgtgca ccacctggcg ctgcaggttg ctgctctcga cccggtcgaa
      961 atccaccagg ccgagagtgc cgatgccggc ggcggccagg tagaggctga ccggcgaacc
     1021 caggccgccg gtgccgatga tcagcacgcg ggcgttcttc aaacgcagtt ggccgcggcg
     1081 accgacatcc ggcagggtga tgtggcgcac gtagcggcgc acctcgtcgt tgctcagctc
     1141 gtcgcagtcc aggccgccgg aggtggcgag catgatgtcc agctcggcct cgcccggcag
     1201 cgggctgtcg gcctccagca gttcgccacc ggcggtgagc aggaaatgct ccttaaactg
     1261 gtcgttgccg tagaacaggt gctcgcgcag gccggcatgg cggccgcaaa cgtcctccac
     1321 cagctcgcgc acggtacggc cctggccctc gacccgcgcc gcgggaagcc tggcgacgcg
     1381 ggccagcact tccggaaaga tcaccacact catagccaaa ctccttttgc aggccgttaa
     1441 ggggagccgg ggaattcccg gctgcagacg aattcttctc cgctccactc gaacagcttg
     1501 gcgccgcgcg cctcgccggc gcgcacatcc accaccaggt aggcgacggg atggatgggc
     1561 tggcccatga acagcgcctt gtcctcgtcc tcgcggctga agtaggcacc gacgtcgggg
     1621 tgcgagtggt agatgacccg caccgggttg tcgccgcgca ggctgtggtt gagcagcagg
     1681 gtgtcggcca ccgcgaaggt gtagccgttg gcggcgctgc gccggtacac ctcgggatcg
     1741 agccggttga gccggttctg gatgttctcg ccgcagtgca cgcgggcgtc ggcgaagacg
     1801 aagccgcagc actcctcggg gtaggtctcg gcggcgtggc ggtagatggt ctgcagagcc
     1861 tggtgatcga ggacgtccat gtcggtcatg gcgctattcc ttcttcgcca gcagtctttc
     1921 caccggcacc ttggtgatgg cgaagccggc cagcagcagg gcggagtac
//
LOCUS       DATIHC010000993         2126 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_23246, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000993 DATIHC010000000
VERSION     DATIHC010000993.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2126
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23246"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..570
                     /locus_tag="VLF16_16540"
     CDS             <1..570
                     /locus_tag="VLF16_16540"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015477894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HSX72542.1"
                     /translation="HLLPGFEPTPLWPPRQLSADAPPYALRLSWDKLLLGLILLAWWL
                     GQPSRQPARTGRVLAVGAATLLAVPLLALGLGLVGWQPKWPEQLWLWLMVNLGVTVLA
                     EELLFRAWLQSALVTRLGAVGGVALTALLFGAAHAPFSPLFAVVATVAGLGYGLVFHL
                     SGRLWPALLLHGAVNLLHLLLLSYPLRSV"
     gene            complement(521..1288)
                     /locus_tag="VLF16_16545"
     CDS             complement(521..1288)
                     /locus_tag="VLF16_16545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017131830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HSX72543.1"
                     /translation="MLVGSEASAGEVLIAAVHFPPYVIKPEEDPHRGLLGDLVKSLNQ
                     VQSRHRFALRATSLNRRFEDFRKARIHVVIFENPDWNWQGVAGTRVELGLEDSEVLVA
                     RRERGRDQHYFDNLKDKRLALFNGYHYGFADFNSDPQWLEAHFNPVITYSHESNLKLL
                     LRGRADVALITRSWLGARMREQPQLREELLISAKEDQRYRHYAILSPKAPISADEFRA
                     AMEQLRQNGELQRIFAPYGIDVIPSAADSSAAVDAAD"
     gene            complement(1409..>2126)
                     /locus_tag="VLF16_16550"
     CDS             complement(1409..>2126)
                     /locus_tag="VLF16_16550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017677288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HSX72544.1"
                     /translation="YHFPPYVMKPESNAPEGLLPELLAAFNAAQDQYRFDLVPTSVTR
                     RYRDFTQGRYDMILFESPDWGWQDIPLNKLDLQIADAEVYVARQQPGRDQHFFDAIGN
                     KRLALYTGYHYGFAGFNADQDHLTRQFNAVFTYSHDSNLLMLMHDRVDISVVTRSYLR
                     IFQRDNPETGRQLLISERTDQVYHHHALLRPGGPLDVAGLSALLQTLQHSGRLEPLIQ
                     RYQLLRATDMAGERARPMPR"
BASE COUNT          342 a          665 c          741 g          378 t
ORIGIN      
        1 cacctgctgc ccggtttcga gccaacgccg ctgtggccgc cgcggcaact gagcgcagac
       61 gccccgccct acgcgctgcg cctgtcctgg gacaagctgc tgctcggcct gattctgctg
      121 gcctggtggc tgggtcaacc gagccggcag ccggcgcgaa cgggccgtgt gctggcggtc
      181 ggcgccgcca cgctgctggc ggtgccgctc ctggcgctgg gcctggggct ggtgggctgg
      241 cagccgaagt ggccggaaca gctctggcta tggctgatgg tgaatctcgg ggtcacggtg
      301 ctggccgagg aactactgtt ccgtgcctgg ctgcagagcg cgctggtgac gcgactgggc
      361 gccgtcggtg gcgtggcatt gaccgcgtta ctgttcggcg ccgcccatgc tcccttcagc
      421 ccgctgttcg ccgtggtggc caccgttgcc gggctcggct acgggctggt ctttcacctc
      481 agcggccggc tttggccggc gctgctgctg cacggcgcgg tcaatctgct gcatctactg
      541 ctgctgagct atccgctgcg ctcggtatga cgtcgatgcc gtagggcgcg aagatgcgct
      601 gcagctcgcc gttctgccgc agctgctcca tggcggcgcg gaactcgtcg gcgctgatcg
      661 gcgccttggg actgaggatc gcgtagtgac gatagcgctg gtcttccttc gcagagatca
      721 gcagctcctc gcgcagctgc ggctgttcac gcatgcgcgc gcccagccag gaacgggtga
      781 tcagcgccac gtcggcacgg ccgcgcagca gcagcttgag attgctctcg tgggaatagg
      841 tgatcaccgg gttgaagtgc gcttccagcc actgcgggtc gctgttgaaa tcggcgaaac
      901 cgtagtggta gccgttgaac agcgccaggc gcttgtcctt cagattgtcg aaatagtgct
      961 gatcgcgacc gcgctcacgc cgcgcgacca gcacctcgga atcctccagg cccagctcga
     1021 cacgggtgcc ggcgacaccc tgccagttcc agtcgggatt ctcgaagatg acgacatgga
     1081 tgcgcgcctt gcggaagtcc tcgaagcgac gattgagcga agtcgcgcgc agggcgaaac
     1141 gatgccggct ctggacctgg ttgagggact tcaccagatc gccgagcagg ccacggtgcg
     1201 gatcttcttc gggcttgatc acatagggag ggaaatgcac cgcggcgatc agcacttcgc
     1261 ccgcggaagc ctccgagccg accaacatgg ccagcagtaa agcgccaagc aatccttgtc
     1321 gacgccgaca catattgacc tcatggacaa ctggagctga acgaagacta gcccagtggc
     1381 gggcgccgcg taaatgagca acggcgcctc agcgcggcat gggccgcgcc cgctcgcccg
     1441 ccatgtccgt ggcccgcagc agttggtagc gctggatcag cggctccagc cggccactgt
     1501 gctgcagcgt ttgcagcaac gcgctcagcc cggcgacgtc gagcgggccg cccgggcgca
     1561 gcaaggcgtg atggtggtag acctgatcgg tgcgctcgga aatcaacagc tgacgccccg
     1621 tctcggggtt gtcgcgctgg aagatccgca gataggagcg cgtcaccacg ctgatgtcga
     1681 cgcggtcgtg catcagcatc agcaggttgc tgtcgtggga gtaggtgaac accgcgttga
     1741 actgccgggt gaggtggtcc tggtcggcgt tgaaaccggc gaaaccgtaa tggtagccgg
     1801 tgtagagcgc caggcgcttg ttgccgatgg cgtcgaagaa atgctggtcg cggcccggct
     1861 gctggcgggc gacgtacacc tcggcgtcgg cgatctgcag gtcgagcttg ttcagcggaa
     1921 tgtcctgcca gccccagtcc ggcgactcga acaggatcat gtcgtagcgc ccctgggtga
     1981 agtcgcggta gcggcgggtc accgaggtcg gcaccagatc gaagcggtac tggtcctgcg
     2041 cggcattgaa ggcggccagc aactcgggca acagcccctc gggtgcgttg ctctccggct
     2101 tcatgacgta gggcgggaag tgatag
//
LOCUS       DATIHC010000994         1781 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_23256, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000994 DATIHC010000000
VERSION     DATIHC010000994.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1781
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23256"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            97..489
                     /locus_tag="VLF16_16555"
     CDS             97..489
                     /locus_tag="VLF16_16555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012019144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72545.1"
                     /translation="MSQANDKLIGPVPASIVNSARLSVTPYEGRVGEFNVAVWLHLPG
                     LANLPVSLMVRYRDGSQVRDVAVDHGKVNVHNKVMLSGIARLPMKTKIEDMQIRLRSA
                     VPAQTLIVEELFVQAVELLDSASRQAMA"
     gene            complement(543..734)
                     /locus_tag="VLF16_16560"
     CDS             complement(543..734)
                     /locus_tag="VLF16_16560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009616909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72546.1"
                     /translation="MSSSKNKIVPLQPRDSEEALERLNRITGLRFSRWPESLASLARQ
                     AAEESEPSKPSSVVRFGVF"
     gene            complement(898..>1781)
                     /locus_tag="VLF16_16565"
     CDS             complement(898..>1781)
                     /locus_tag="VLF16_16565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017937916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="YihY family inner membrane protein"
                     /protein_id="HSX72547.1"
                     /translation="AIWRVRQPRRGISSFLLYWAILSLGPLLLGAGFAVTTYITSLML
                     LSGPESLAGMQTLLRFAPLLFSTAAFTLIYSAVPNTRVPLRHALAGGLFTSALVEVAK
                     NVFGLFVSWFPGYQLIYGAFATVPLFLLWIYLSWLIVLFGAELVCNLSSSRSWRRRAL
                     PRLLVLLGVLEVFHERQQRGRSVRHRDVQRQGWSMPEDEWAELVEFLEQEQLICRTSE
                     GAWVLCRDLEHYSLQRLIAHNPWPLPRLNQLPERLDAAWYPALRQALEQMHMEQEALF
                     GESLAHWLKARERACQK"
BASE COUNT          330 a          594 c          558 g          299 t
ORIGIN      
        1 ggtctcgccg gccgaagcct cagtgcacag tttacggcca aagcccccgc ctataatccg
       61 cccattccta taccaatgag ttctgccgga gccttcatgt cccaagccaa cgacaagctg
      121 attggtccag ttcctgccag catcgtcaac agcgctcgcc tgagcgtgac gccctacgaa
      181 gggcgtgtcg gcgagttcaa tgtggcggtc tggctgcatc tgccggggct ggcgaatctg
      241 ccggtatcgc tgatggtgcg ctaccgtgac ggcagccagg tccgcgacgt ggcggtcgac
      301 cacggtaagg tcaacgtgca caacaaggtg atgctttccg gcatcgcccg tttgccgatg
      361 aagaccaaga tcgaggacat gcagattcgc ctgcgctcgg cggtaccggc gcagacgctg
      421 atcgtcgagg aattgttcgt ccaggccgtg gagctgctgg acagcgcgtc gcgccaggcc
      481 atggcctgag tcgtcacccc gtttcccggc ccccgcttcg gcgggggttt tgtttttggg
      541 gatcagaaca cgccgaagcg caccacgctg ctgggcttgg atggttcgct ctcttcggcg
      601 gcctgtcggg ccagggaggc caacgattcc ggccagcggg agaaacgcag gccggtgatg
      661 cggttgaggc gttccagcgc ctcctcggaa tcccgcggtt gcaacggcac tatcttgttc
      721 ttgctactgc tcatccactc gacttccctg agtcattcag gccgctagca gtctgccagc
      781 atgttgctgg gtaattgcca gaagcgtgcc agccttcccg ggccggtagt ttgtcgcgcc
      841 tgagcgcgcc cgcagccgtt cagccagctg cgcctcgcct taaactgact tttttcgtca
      901 cttctgacaa gccctttccc gggccttgag ccagtgcgcc aggctttcgc caaacagcgc
      961 ctcctgctcc atatgcatct gctccaaggc ctggcgcagc gctggatacc aggccgcgtc
     1021 cagccgctcc ggcaactggt tgagccgcgg caacggccag gggttgtggg cgatcaggcg
     1081 ctgcaggctg tagtgctcca ggtcgcggca gagcacccag gcgccctcgc tggtccggca
     1141 gatcagctgt tcctgctcga ggaactcgac cagctcggcc cactcatcct ccggcatcga
     1201 ccagccctgg cgctgcacgt cgcgatggcg caccgaacgc ccgcgctgtt gacgctcgtg
     1261 aaacacctcc agcacaccga gcagcaccag cagacgcggc agcgcccggc gccgccagct
     1321 acgcgacgaa gagagattgc acaccagctc cgcgccgaac agcacgatca gccaggacag
     1381 gtagatccac agcaggaaca gcggcaccgt ggcgaacgcg ccgtagatca gctggtagcc
     1441 gggaaaccag ctgacgaaca ggccgaagac gtttttggca acctccacca gtgccgaggt
     1501 gaacagccca ccggccagcg cgtggcgcag cggcacacgg gtgttgggca ccgccgaata
     1561 gatcagggtg aaggccgccg tgctgaacag cagcggcgcg aagcgcagca acgtctgcat
     1621 gcccgccaac gactcgggcc ccgacagcag catcagcgag gtgatgtagg tggtcaccgc
     1681 gaaacccgca ccaagcagca acggaccgag gctgaggatg gcccagtaca gcaggaagct
     1741 ggagatcccg cggcgcggct ggcgcacccg ccagatggcg t
//
LOCUS       DATIHC010000995         2189 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_23262, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000995 DATIHC010000000
VERSION     DATIHC010000995.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 2189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2189
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23262"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            181..975
                     /locus_tag="VLF16_16570"
     CDS             181..975
                     /locus_tag="VLF16_16570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011920451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72548.1"
                     /translation="MRTLTLLALSLSLAAQAHALELAKYPQVFDAGNGVSVKLAPSAD
                     GKQALVQVSGINHPLDEVVFLTEVNERGDDERDYATTLDGGAYNLLLKRQNWGGDSYQ
                     LYLPGTEGFQLGFDEQASQQAKPAELLALYEQQKGEGVQDKLARFDRQKHEKANRENL
                     QALDQEASKDCGTPLQTDVDWNGIDDGQMKRLSISGYCGEVVSQMASLCRNEPAFKAE
                     AAGIEGVECRFDTAMKLRERDGKILFATEENAPNQGDFINAFLRNR"
     gene            1224..2138
                     /locus_tag="VLF16_16575"
     CDS             1224..2138
                     /locus_tag="VLF16_16575"
                     /EC_number="7.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017521677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter
                     substrate-binding protein"
                     /protein_id="HSX72549.1"
                     /translation="MTKSTLSRAIGFALAATLCSAPALAEELTGTLKKIKDSGTIVLG
                     HRDSSIPFSYFGSDPQQPEGYSHDLQLKAVEAIKQKLGMPDLKVRYNLVTSQTRIPLV
                     QNGTVDLECGSTTNNVERQQQVDFSVGIFEVGTRLLTKTSSGVADFPDLKGKNVVTTA
                     GTTSERLLKAMNAEKKMGMNIISAKDHGESFLMLESGRAVAFMMDDALLAGEMAKAKK
                     PADWHVVGTPQSYEIYGCMVRKGDPAFKAVVDDALVATFKSGEVNAIYDKWFLKPVPP
                     KGLNLNFPMSDELKKLIANPTDKAAEQI"
BASE COUNT          440 a          770 c          655 g          324 t
ORIGIN      
        1 gtacacgacg aaaccctcga gccccgcgcc gagctcgaag tctgctacga gctgatcttc
       61 tgcccgctgg tcagcgccgt ccgcctgccg cgctgatcgc ccgcgcagcg gcagggctca
      121 cagaccgccc ggtcacgggc ggctagactc gtcacctttc cagccaacaa ggacgttgcc
      181 atgcgcacgc tgactctcct cgccctctcg ttgtccctcg ccgcccaggc ccacgccctg
      241 gaactggcca agtacccaca ggtgttcgat gccggcaacg gcgtcagcgt caagctggcg
      301 cccagcgccg acggtaagca ggcgctggtg caggtcagcg gcatcaacca tccgctcgac
      361 gaggtggtgt ttctcaccga ggtgaacgag cgcggcgacg acgagcgcga ctacgccacc
      421 accctcgacg gcggcgccta caacctgctg ctcaagcgcc agaactgggg cggcgacagc
      481 tatcagctgt acctgccggg caccgaaggc ttccagctgg gcttcgacga acaggccagc
      541 cagcaggcca aacccgccga gctgctggcc ctctacgagc agcagaaggg cgaaggcgtg
      601 caggacaagc tggcccggtt cgaccgtcag aagcacgaga aggccaaccg ggagaacctg
      661 caggcgctgg accaggaagc ctcgaaggac tgcggcacac cgttgcagac cgacgtcgac
      721 tggaacggta tcgacgatgg gcagatgaag cgcctgagca tctccggcta ttgcggcgag
      781 gtggtcagcc agatggccag cctgtgccgc aacgagcccg ccttcaaggc cgaggccgcc
      841 ggcatcgagg gtgtggagtg ccgcttcgac accgccatga agctgcgcga gcgcgacggc
      901 aagatcctct tcgccaccga agagaacgcg cccaaccagg gcgacttcat caacgccttc
      961 ctgcgcaacc gctgatcccc tcccggcccc gttctcgcgg ggccgtccat tcggatttcc
     1021 gaacgccgta ccctcctacg ttcgccacgc cgaacggaga acacgccccg ccatcgccga
     1081 acttagaatt tagttcttat atttcagtag gttatgcgaa tcaaagctga ctggcacagt
     1141 ccctgctcta gctctggcag ggatggtctg catcccatcc gccaagcggg tacgcccgga
     1201 caacaacaac agcgagaatc agcatgacca agagcactct ctcccgcgcc atcggcttcg
     1261 ccctggccgc taccctgtgc agcgccccgg ccctggccga agaactgacc ggcaccctga
     1321 agaagatcaa ggacagcggc accatcgtcc tcggccatcg cgactcctcc attcccttct
     1381 cctacttcgg cagcgatccg cagcagcccg agggctactc ccacgacctg cagctgaagg
     1441 cggtcgaggc gatcaagcag aagctgggca tgcccgacct caaggtgcgc tacaacctgg
     1501 tgacctcgca gacccgcatc ccgctggtgc agaacggcac cgtggacctg gagtgcggct
     1561 ccaccaccaa caacgtcgag cgccagcagc aggtcgactt ctccgtcggc atcttcgagg
     1621 tgggcacccg cctgctgacc aagaccagct ccggcgtcgc cgacttcccg gacctcaagg
     1681 gcaagaacgt ggtgaccacc gccggcacca cctccgagcg cctgctcaag gcgatgaacg
     1741 ccgagaagaa gatgggcatg aacatcatct cggccaagga tcacggcgag tccttcctga
     1801 tgctggagtc cggccgcgcc gtggccttca tgatggacga cgccctgctc gccggcgaaa
     1861 tggccaaggc caagaagccg gccgactggc acgtggtcgg caccccgcag tcctacgaga
     1921 tctacggctg catggtgcgc aagggtgacc cggccttcaa ggcggtggtc gacgacgcgc
     1981 tggtggctac cttcaagtcg ggcgaagtca acgccatcta cgacaagtgg ttcctcaagc
     2041 cggtcccgcc gaagggcctc aacctgaact tcccgatgag cgacgagctg aagaagctga
     2101 tcgccaaccc gaccgacaag gccgccgagc aaatctaagc gcggccgtag gggctagctc
     2161 ccctctcctc tcggggagag gggctgggg
//
LOCUS       DATIHC010000996         1714 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pseudomonas sp. isolate SMAG_U15627 k141_23332, whole
            genome shotgun sequence.
ACCESSION   DATIHC010000996 DATIHC010000000
VERSION     DATIHC010000996.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936343
            Sequence Read Archive: SRR908291
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudomonas sp. (soil metagenome)
  ORGANISM  Pseudomonas sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1714)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1714)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 06:15:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,318
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,267
            CDSs (with protein)               :: 3,267
            Genes (RNA)                       :: 30
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1714
                     /organism="Pseudomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23332"
                     /isolate="SMAG_U15627"
                     /isolation_source="soil"
                     /db_xref="taxon:306"
                     /environmental_sample
                     /country="Israel"
                     /lat_lon="31.99 N 34.82 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            162..407
                     /locus_tag="VLF16_16580"
     CDS             162..407
                     /locus_tag="VLF16_16580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSX72550.1"
                     /translation="MKAVSSSAHRAHLDLLLRATLLFVCGVAAGQASQFGQGQEPVGQ
                     VRDKAPAAAQPLRPLTAELATQRHGSLEVTHRQRWVF"
     gene            497..661
                     /locus_tag="VLF16_16585"
     CDS             497..661
                     /locus_tag="VLF16_16585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007160206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HSX72551.1"
                     /translation="MLSWSITFLIIAIIAGVLGFGGIAGTAAGIAKILFLVFLVMFIL
                     SFIMGRRPRP"
     gene            786..>1714
                     /locus_tag="VLF16_16590"
     CDS             786..>1714
                     /locus_tag="VLF16_16590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_254165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside recognition domain-containing
                     protein"
                     /protein_id="HSX72552.1"
                     /translation="MLNGLWLGFFVVAAVAAAIRWIGGDATVWASMVEALFTMAKTSV
                     DVMILLFGTLTLWLGFLRIAEKAGLVELLARLLSPLFARLMPDVPRGHHSLGLVTLSF
                     TANGLGLDNAATPIGLRAMKALQELNPNPTSATNAQVLFMVMNASSFVLLPVSIFMYR
                     AQQGAEDPALVFLPILLANAISSASALLSVAVMQRLRLWDPVLLAWLGGAALAIGTFM
                     AVLAGLSATALTALSSLLGNLTLFGLILGFLLLGALRKVPVYESFVEGAKEGFEVAKN
                     LLPYLVAMLCAVGVLRASGALDVLLDGVRWCVEG"
BASE COUNT          246 a          561 c          579 g          328 t
ORIGIN      
        1 acgtcgagga gcgcctcttg cgggccttcg aagaggctcg gcacgaggcg cccgccgaat
       61 ggcagggcgt gctggaccgt gaaatgccga acgtgcgcgc gtgccatgca cgaatgctgg
      121 aactgaaggg ctcgaattga gctcaaccag gaggacacgg aatgaaagcc gttagctcgt
      181 cggcgcatcg cgcccacctc gatctgctgc tgcgcgcgac cctgctgttc gtgtgtggcg
      241 tcgccgccgg acaggcaagc cagttcggcc aggggcagga gcccgtcggg caggtccgcg
      301 acaaggcgcc ggctgcggct cagccgctac ggcccctgac ggcagagctg gcgacccagc
      361 gtcacggctc gctcgaagta acccatcggc agcgctgggt gttttgaaca gatgggggct
      421 gccggccaag caccggtgac ctgtcgtagc gggccctgcc atccggcagg cccggaaccg
      481 caaaggagaa aacaacatgc tgagctggtc cattaccttc ctgatcatcg ccatcatcgc
      541 cggtgtactg ggcttcggtg gtatcgccgg taccgccgcg ggcattgcca agatcctgtt
      601 cctggtcttc ctggtgatgt tcatcctgtc cttcatcatg ggccgtcgtc cgcgaccctg
      661 accttcgata gccggctgcg gcggttgacc cgtctcggcc ggcggagatc gagttcgacg
      721 gcgggtccat gacctgccga cggccgcgcc gcgttatcat ccctcgcgac taggggagac
      781 gacgcatgct caacggcctg tggctgggat tcttcgtggt ggccgcagtg gctgccgcaa
      841 tacgctggat aggtggggac gcgacggtct gggcgtccat ggtggaagcg ctgttcacca
      901 tggcgaagac gtcggtcgac gtgatgatcc tgctgttcgg caccctcacc ttgtggctgg
      961 gcttcctgcg catcgccgaa aaggccggcc tggtcgaact gctcgcccgc ctgctctccc
     1021 cgctcttcgc ccggctgatg ccggacgtgc cccgcggcca tcattccctc ggcctcgtta
     1081 ccctcagctt caccgccaat ggcctcggcc tggacaacgc cgccacgccc atcggcctgc
     1141 gtgcgatgaa ggcgctgcag gaactcaacc ccaaccccac ctcggcgacc aacgcccagg
     1201 tgctgttcat ggtgatgaac gcctcgtcgt tcgtcctgct gccggtgtcg atcttcatgt
     1261 accgcgcgca gcagggcgcc gaagacccgg ccctggtgtt cctgccgatc ctgctggcca
     1321 atgccatctc cagtgccagc gccctgctgt cggtggcggt gatgcagcgc ctgcgcctgt
     1381 gggacccggt gctgctggcc tggctcggtg gcgcggcgct ggccatcggc accttcatgg
     1441 cggtattggc ggggttgagc gcgacggcat tgaccgcgct gtcgtcgctg ctcggcaatc
     1501 tcacgctgtt cggcctgatc ctgggctttc tgctgctcgg tgcactgcgc aaggtgccgg
     1561 tgtacgagag cttcgtcgag ggcgcgaagg aaggcttcga ggtggcgaag aacttgctgc
     1621 cctacctggt cgccatgctc tgcgcggtgg gcgtgctgcg tgcgtcgggt gcgctggatg
     1681 tgctgctcga cggcgtgcgc tggtgtgtcg aggg
//
